Query 012679
Match_columns 458
No_of_seqs 975 out of 2767
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 14:08:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gga_A P55CDC, cell division c 100.0 7E-67 2.4E-71 517.1 47.9 398 33-441 2-402 (420)
2 4aez_A CDC20, WD repeat-contai 100.0 5.4E-59 1.8E-63 457.7 47.9 385 29-442 1-388 (401)
3 4ggc_A P55CDC, cell division c 100.0 3.6E-52 1.2E-56 394.6 47.9 315 119-436 3-317 (318)
4 1vyh_C Platelet-activating fac 100.0 2.1E-44 7.1E-49 354.9 39.6 278 142-433 109-410 (410)
5 3ow8_A WD repeat-containing pr 100.0 2.8E-43 9.6E-48 335.2 41.1 280 140-432 31-319 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 9.4E-43 3.2E-47 334.3 41.9 274 143-431 57-340 (340)
7 3frx_A Guanine nucleotide-bind 100.0 1.3E-40 4.5E-45 316.5 41.5 279 142-435 18-318 (319)
8 2pbi_B Guanine nucleotide-bind 100.0 6.9E-41 2.4E-45 323.2 39.7 274 143-431 66-354 (354)
9 3iz6_a 40S ribosomal protein R 100.0 1.4E-41 4.7E-46 331.3 34.3 282 142-437 67-378 (380)
10 2ynn_A Coatomer subunit beta'; 100.0 2.4E-40 8.3E-45 312.5 40.0 279 143-434 15-302 (304)
11 4gqb_B Methylosome protein 50; 100.0 4.1E-41 1.4E-45 323.1 34.7 281 143-436 32-333 (344)
12 2ynn_A Coatomer subunit beta'; 100.0 2.3E-40 7.8E-45 312.6 37.3 255 176-441 6-266 (304)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.4E-40 8.2E-45 318.2 37.8 288 143-440 18-341 (345)
14 2hes_X YDR267CP; beta-propelle 100.0 2.1E-40 7E-45 316.7 36.8 282 143-434 16-328 (330)
15 4ery_A WD repeat-containing pr 100.0 4.6E-39 1.6E-43 304.5 44.0 277 142-433 24-311 (312)
16 4g56_B MGC81050 protein; prote 100.0 4.7E-40 1.6E-44 317.7 33.7 287 141-438 42-347 (357)
17 2xzm_R RACK1; ribosome, transl 100.0 3.5E-39 1.2E-43 309.8 39.1 277 143-435 23-341 (343)
18 4aow_A Guanine nucleotide-bind 100.0 3.2E-38 1.1E-42 301.5 42.3 282 142-436 39-339 (340)
19 1erj_A Transcriptional repress 100.0 1.3E-38 4.3E-43 311.8 40.2 278 142-435 65-390 (393)
20 1nr0_A Actin interacting prote 100.0 2E-38 6.8E-43 328.1 40.6 288 142-437 148-570 (611)
21 1nr0_A Actin interacting prote 100.0 3.1E-38 1.1E-42 326.7 41.0 278 144-438 21-359 (611)
22 1vyh_C Platelet-activating fac 100.0 1.3E-38 4.5E-43 313.4 35.8 251 177-440 102-375 (410)
23 3zwl_B Eukaryotic translation 100.0 8.8E-38 3E-42 301.3 40.6 297 125-437 18-349 (369)
24 3dm0_A Maltose-binding peripla 100.0 1.6E-37 5.4E-42 326.2 41.8 278 142-433 383-692 (694)
25 1sq9_A Antiviral protein SKI8; 100.0 3E-38 1E-42 308.6 34.0 280 142-435 17-396 (397)
26 3ow8_A WD repeat-containing pr 100.0 2.7E-37 9.2E-42 293.9 36.6 253 176-441 25-286 (321)
27 3odt_A Protein DOA1; ubiquitin 100.0 6.5E-37 2.2E-41 288.7 36.9 277 143-441 20-303 (313)
28 1gxr_A ESG1, transducin-like e 100.0 2.6E-36 8.7E-41 287.5 41.3 278 141-433 51-336 (337)
29 4gqb_B Methylosome protein 50; 100.0 2.2E-37 7.5E-42 297.2 33.9 242 142-394 83-333 (344)
30 2pm9_A Protein WEB1, protein t 100.0 2.2E-38 7.4E-43 311.4 26.7 286 143-439 14-342 (416)
31 4e54_B DNA damage-binding prot 100.0 8.7E-38 3E-42 310.0 31.2 288 141-437 119-433 (435)
32 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-37 9.3E-42 298.8 33.7 293 142-440 9-367 (372)
33 1got_B GT-beta; complex (GTP-b 100.0 1.5E-36 5.2E-41 291.1 38.2 252 176-440 48-307 (340)
34 3ei3_B DNA damage-binding prot 100.0 7.9E-37 2.7E-41 297.6 36.3 279 142-434 74-382 (383)
35 2ymu_A WD-40 repeat protein; u 100.0 1.6E-36 5.5E-41 311.3 40.1 268 143-431 305-577 (577)
36 1r5m_A SIR4-interacting protei 100.0 6.8E-37 2.3E-41 300.9 35.5 276 141-433 108-424 (425)
37 1p22_A F-BOX/WD-repeat protein 100.0 3.4E-37 1.2E-41 305.7 33.6 276 143-442 135-422 (435)
38 4g56_B MGC81050 protein; prote 100.0 7.1E-38 2.4E-42 302.4 27.9 279 147-440 11-307 (357)
39 3k26_A Polycomb protein EED; W 100.0 2.1E-37 7.3E-42 298.5 31.0 283 142-433 19-365 (366)
40 2pm7_B Protein transport prote 100.0 1.5E-36 5.1E-41 285.5 34.5 249 177-434 3-285 (297)
41 3i2n_A WD repeat-containing pr 100.0 8.3E-37 2.8E-41 293.5 32.8 282 141-436 18-355 (357)
42 4ery_A WD repeat-containing pr 100.0 1.9E-35 6.4E-40 279.7 38.9 255 174-441 14-275 (312)
43 2pbi_B Guanine nucleotide-bind 100.0 1.1E-35 3.7E-40 286.8 37.8 254 176-440 57-321 (354)
44 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-35 7.2E-40 283.7 37.6 256 173-436 5-285 (345)
45 2j04_B YDR362CP, TAU91; beta p 100.0 5E-37 1.7E-41 309.7 27.0 270 154-435 176-518 (524)
46 3iz6_a 40S ribosomal protein R 100.0 8.3E-37 2.8E-41 297.5 27.1 254 176-440 59-335 (380)
47 3v7d_B Cell division control p 100.0 4.3E-35 1.5E-39 292.7 38.7 278 144-442 125-429 (464)
48 2ymu_A WD-40 repeat protein; u 100.0 8E-35 2.8E-39 298.6 40.8 271 142-433 263-538 (577)
49 3vl1_A 26S proteasome regulato 100.0 9.6E-36 3.3E-40 293.2 32.3 275 146-437 61-368 (420)
50 1gxr_A ESG1, transducin-like e 100.0 1.8E-35 6.1E-40 281.7 32.4 283 143-440 11-302 (337)
51 3dwl_C Actin-related protein 2 100.0 8.8E-37 3E-41 296.4 23.8 282 143-432 13-377 (377)
52 3gre_A Serine/threonine-protei 100.0 4.4E-36 1.5E-40 297.5 29.1 277 142-431 64-437 (437)
53 2pm9_A Protein WEB1, protein t 100.0 1.7E-36 5.8E-41 297.9 25.9 285 141-435 67-415 (416)
54 3frx_A Guanine nucleotide-bind 100.0 8.7E-35 3E-39 276.3 36.7 250 174-438 8-271 (319)
55 3bg1_A Protein SEC13 homolog; 100.0 3.5E-36 1.2E-40 285.6 27.0 249 178-434 8-293 (316)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-34 3.6E-39 288.5 39.0 272 142-436 160-444 (445)
57 1r5m_A SIR4-interacting protei 100.0 5.5E-35 1.9E-39 287.2 36.5 278 143-436 47-363 (425)
58 3vl1_A 26S proteasome regulato 100.0 2E-35 6.9E-40 290.9 33.1 268 152-434 110-419 (420)
59 1erj_A Transcriptional repress 100.0 1.1E-34 3.6E-39 283.9 37.1 246 181-440 62-347 (393)
60 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-34 6.1E-39 286.9 39.3 274 143-441 121-398 (445)
61 4a11_B DNA excision repair pro 100.0 1.6E-34 5.5E-39 282.5 37.2 291 142-440 44-371 (408)
62 2hes_X YDR267CP; beta-propelle 100.0 1.6E-34 5.5E-39 275.8 35.9 251 175-435 6-281 (330)
63 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-35 5.1E-40 290.7 28.5 283 142-436 35-344 (402)
64 2xzm_R RACK1; ribosome, transl 100.0 4.7E-34 1.6E-38 274.1 37.4 251 175-438 13-289 (343)
65 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-34 7.1E-39 274.8 34.4 257 178-439 6-342 (351)
66 3dw8_B Serine/threonine-protei 100.0 3.3E-34 1.1E-38 284.5 33.7 284 138-432 25-444 (447)
67 3mkq_A Coatomer beta'-subunit; 100.0 5.9E-34 2E-38 304.1 37.9 281 143-437 15-305 (814)
68 3jrp_A Fusion protein of prote 100.0 2.9E-34 9.9E-39 277.9 31.3 251 176-435 4-288 (379)
69 1pgu_A Actin interacting prote 100.0 1.1E-33 3.9E-38 291.8 37.6 282 141-440 18-334 (615)
70 3v7d_B Cell division control p 100.0 2.8E-33 9.4E-38 279.6 36.6 272 141-431 162-460 (464)
71 3sfz_A APAF-1, apoptotic pepti 100.0 2E-33 6.9E-38 313.4 39.6 283 142-434 616-913 (1249)
72 2pm7_B Protein transport prote 100.0 2E-33 6.8E-38 264.1 32.2 242 143-391 11-284 (297)
73 3ei3_B DNA damage-binding prot 100.0 7.4E-34 2.5E-38 276.5 29.9 252 176-442 66-347 (383)
74 1sq9_A Antiviral protein SKI8; 100.0 1.8E-33 6.2E-38 274.7 32.6 257 176-442 9-330 (397)
75 2xyi_A Probable histone-bindin 100.0 2.1E-33 7.3E-38 278.0 32.7 252 177-435 122-411 (430)
76 4h5i_A Guanine nucleotide-exch 100.0 6E-34 2.1E-38 275.7 27.3 281 141-435 14-344 (365)
77 3mkq_A Coatomer beta'-subunit; 100.0 4.1E-33 1.4E-37 297.5 35.6 255 176-441 6-266 (814)
78 2oaj_A Protein SNI1; WD40 repe 100.0 5E-33 1.7E-37 298.7 35.8 286 141-438 58-609 (902)
79 1yfq_A Cell cycle arrest prote 100.0 7.5E-33 2.6E-37 264.5 32.8 273 142-431 12-321 (342)
80 3i2n_A WD repeat-containing pr 100.0 4.3E-33 1.5E-37 267.5 29.8 251 178-438 13-295 (357)
81 4aow_A Guanine nucleotide-bind 100.0 4.8E-32 1.6E-36 258.6 36.9 266 162-440 17-292 (340)
82 1k8k_C P40, ARP2/3 complex 41 100.0 7.6E-33 2.6E-37 267.5 31.3 245 181-434 6-274 (372)
83 3dw8_B Serine/threonine-protei 100.0 1.4E-33 4.9E-38 279.9 26.7 245 182-438 27-377 (447)
84 3mmy_A MRNA export factor; mRN 100.0 2.8E-32 9.7E-37 262.6 34.9 283 141-437 39-349 (368)
85 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-32 8.7E-37 271.8 35.5 281 143-435 6-392 (450)
86 3dwl_C Actin-related protein 2 100.0 2.1E-34 7.1E-39 279.6 19.5 243 182-434 10-281 (377)
87 3bg1_A Protein SEC13 homolog; 100.0 2.1E-33 7.2E-38 266.4 25.9 242 142-391 14-292 (316)
88 2j04_B YDR362CP, TAU91; beta p 100.0 3.8E-34 1.3E-38 288.7 21.1 227 198-435 176-429 (524)
89 3zwl_B Eukaryotic translation 100.0 1.7E-31 5.9E-36 257.2 38.7 263 170-441 19-311 (369)
90 3odt_A Protein DOA1; ubiquitin 100.0 2E-32 6.9E-37 257.9 31.3 248 174-441 9-262 (313)
91 1pgu_A Actin interacting prote 100.0 2.1E-32 7.2E-37 282.3 33.6 269 144-433 67-365 (615)
92 3sfz_A APAF-1, apoptotic pepti 100.0 3.3E-32 1.1E-36 303.6 36.9 284 142-439 658-1039(1249)
93 1yfq_A Cell cycle arrest prote 100.0 1.3E-32 4.5E-37 262.8 28.8 245 179-441 7-289 (342)
94 3dm0_A Maltose-binding peripla 100.0 4.9E-32 1.7E-36 284.4 34.9 253 176-439 375-637 (694)
95 3gre_A Serine/threonine-protei 100.0 6.1E-33 2.1E-37 274.9 25.4 259 166-442 48-367 (437)
96 2oaj_A Protein SNI1; WD40 repe 100.0 5E-32 1.7E-36 290.9 33.5 282 142-432 152-659 (902)
97 4e54_B DNA damage-binding prot 100.0 1.4E-32 4.9E-37 272.5 26.0 253 178-442 114-395 (435)
98 3k26_A Polycomb protein EED; W 100.0 3E-32 1E-36 262.4 26.3 247 179-439 14-323 (366)
99 3jro_A Fusion protein of prote 100.0 2.8E-32 9.6E-37 288.5 27.1 251 177-436 3-287 (753)
100 1l0q_A Surface layer protein; 100.0 2.2E-30 7.4E-35 252.6 38.1 269 154-439 5-280 (391)
101 1p22_A F-BOX/WD-repeat protein 100.0 6.8E-31 2.3E-35 260.3 34.5 241 176-436 126-367 (435)
102 3bws_A Protein LP49; two-domai 100.0 3E-30 1E-34 255.1 38.9 278 144-434 125-432 (433)
103 3jrp_A Fusion protein of prote 100.0 4.1E-31 1.4E-35 255.7 29.4 245 142-393 12-288 (379)
104 3lrv_A PRE-mRNA-splicing facto 100.0 3.2E-31 1.1E-35 254.2 26.0 260 151-433 48-332 (343)
105 4aez_A CDC20, WD repeat-contai 100.0 3.3E-30 1.1E-34 252.6 32.2 248 176-437 84-339 (401)
106 3vu4_A KMHSV2; beta-propeller 100.0 4.9E-30 1.7E-34 247.3 32.5 279 142-437 20-339 (355)
107 4gq1_A NUP37; propeller, trans 100.0 2.9E-30 9.9E-35 252.4 30.9 277 152-434 31-389 (393)
108 2w18_A PALB2, fancn, partner a 100.0 2.2E-30 7.6E-35 241.2 28.4 277 144-432 42-355 (356)
109 3f3f_A Nucleoporin SEH1; struc 100.0 6E-30 2.1E-34 243.8 31.9 249 142-399 12-344 (351)
110 3mmy_A MRNA export factor; mRN 100.0 1.1E-29 3.7E-34 244.5 32.4 249 176-441 32-311 (368)
111 3vu4_A KMHSV2; beta-propeller 100.0 5.9E-30 2E-34 246.7 30.5 249 165-436 3-273 (355)
112 2j04_A TAU60, YPL007P, hypothe 100.0 7E-31 2.4E-35 259.7 22.8 259 143-433 17-296 (588)
113 4a11_B DNA excision repair pro 100.0 3.6E-30 1.2E-34 251.6 25.3 269 160-442 22-331 (408)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-29 5.1E-34 247.9 29.4 242 186-437 37-302 (402)
115 2xyi_A Probable histone-bindin 100.0 1.4E-29 4.9E-34 250.5 28.4 244 141-393 128-411 (430)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.2E-29 2.8E-33 246.5 31.3 240 184-432 5-337 (450)
117 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-29 4.3E-34 243.2 23.5 235 190-440 43-298 (343)
118 4h5i_A Guanine nucleotide-exch 100.0 5.3E-29 1.8E-33 240.9 27.7 240 143-392 75-343 (365)
119 3jro_A Fusion protein of prote 100.0 2.3E-29 8E-34 266.1 27.2 244 142-392 10-285 (753)
120 4gga_A P55CDC, cell division c 100.0 6.7E-28 2.3E-32 237.7 34.2 256 141-411 147-414 (420)
121 3bws_A Protein LP49; two-domai 100.0 1.2E-27 4.1E-32 236.3 31.8 268 162-440 102-396 (433)
122 1l0q_A Surface layer protein; 100.0 2.4E-26 8.1E-31 223.9 38.1 279 144-437 34-345 (391)
123 2j04_A TAU60, YPL007P, hypothe 100.0 3.9E-28 1.3E-32 240.2 25.0 254 142-423 53-350 (588)
124 4gq1_A NUP37; propeller, trans 100.0 3.9E-28 1.3E-32 237.3 24.1 234 152-391 102-388 (393)
125 4ggc_A P55CDC, cell division c 100.0 5.7E-26 1.9E-30 214.3 35.3 244 185-442 27-281 (318)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.3E-26 4.3E-31 228.1 28.3 279 143-436 64-389 (415)
127 1nir_A Nitrite reductase; hemo 99.9 1.1E-24 3.6E-29 221.3 35.2 273 153-439 151-463 (543)
128 3u4y_A Uncharacterized protein 99.9 1.6E-24 5.4E-29 206.0 34.4 273 154-437 13-307 (331)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.6E-24 8.9E-29 211.6 33.5 249 151-416 143-410 (415)
130 2ojh_A Uncharacterized protein 99.9 3.5E-25 1.2E-29 206.0 23.3 256 158-425 19-293 (297)
131 1ri6_A Putative isomerase YBHE 99.9 7.2E-24 2.5E-28 201.9 31.6 269 154-434 7-308 (343)
132 1nir_A Nitrite reductase; hemo 99.9 9.9E-24 3.4E-28 214.1 34.3 288 144-442 181-522 (543)
133 3vgz_A Uncharacterized protein 99.9 2.2E-22 7.5E-27 192.6 36.1 267 144-425 43-335 (353)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.3E-23 4.3E-28 222.0 28.9 280 143-434 38-413 (741)
135 1pby_B Quinohemoprotein amine 99.9 9.4E-23 3.2E-27 193.7 31.3 270 153-442 3-318 (337)
136 1xfd_A DIP, dipeptidyl aminope 99.9 5.8E-24 2E-28 224.0 24.6 281 144-435 19-394 (723)
137 2w18_A PALB2, fancn, partner a 99.9 2.7E-23 9.1E-28 193.6 25.7 192 181-390 134-355 (356)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.6E-22 5.4E-27 212.5 29.9 278 142-436 82-437 (706)
139 3hfq_A Uncharacterized protein 99.9 1.9E-21 6.4E-26 186.2 33.8 266 160-434 15-317 (347)
140 3scy_A Hypothetical bacterial 99.9 1E-20 3.5E-25 182.1 38.0 269 160-434 26-337 (361)
141 2oit_A Nucleoporin 214KDA; NH2 99.9 2.8E-21 9.5E-26 190.8 32.6 290 132-434 27-405 (434)
142 1ri6_A Putative isomerase YBHE 99.9 5.7E-21 1.9E-25 181.8 31.2 266 143-415 39-334 (343)
143 2z3z_A Dipeptidyl aminopeptida 99.9 6.1E-22 2.1E-26 208.0 26.2 278 145-436 29-393 (706)
144 2ecf_A Dipeptidyl peptidase IV 99.9 1.7E-21 5.8E-26 205.7 28.5 274 143-435 110-460 (741)
145 3vgz_A Uncharacterized protein 99.9 2.8E-20 9.7E-25 177.9 32.7 243 183-440 40-309 (353)
146 2ojh_A Uncharacterized protein 99.9 4.8E-21 1.6E-25 177.8 24.0 224 201-437 18-261 (297)
147 1jmx_B Amine dehydrogenase; ox 99.9 8E-21 2.8E-25 181.3 25.9 239 188-442 4-333 (349)
148 3u4y_A Uncharacterized protein 99.9 2.5E-20 8.4E-25 177.0 28.9 235 190-437 4-255 (331)
149 1jof_A Carboxy-CIS,CIS-muconat 99.9 4.4E-20 1.5E-24 178.2 29.5 275 154-435 5-342 (365)
150 1k32_A Tricorn protease; prote 99.9 2E-20 6.8E-25 204.9 29.9 277 142-436 53-463 (1045)
151 1z68_A Fibroblast activation p 99.9 1.5E-21 5.3E-26 205.4 19.6 281 146-434 20-391 (719)
152 1k32_A Tricorn protease; prote 99.9 4.7E-20 1.6E-24 201.9 31.4 272 143-436 297-639 (1045)
153 3pe7_A Oligogalacturonate lyas 99.9 6.1E-20 2.1E-24 178.3 28.4 282 142-436 36-384 (388)
154 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-20 6.1E-25 197.3 25.4 269 143-423 62-429 (723)
155 3o4h_A Acylamino-acid-releasin 99.9 4.3E-20 1.5E-24 189.6 23.4 264 144-434 24-315 (582)
156 3hfq_A Uncharacterized protein 99.8 9.1E-19 3.1E-23 167.5 30.0 248 144-396 42-323 (347)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 6.5E-20 2.2E-24 181.0 21.9 252 161-433 23-332 (434)
158 1pby_B Quinohemoprotein amine 99.8 4.6E-19 1.6E-23 168.0 24.1 242 144-403 36-321 (337)
159 1jmx_B Amine dehydrogenase; ox 99.8 1.2E-18 4.2E-23 166.1 27.2 232 153-402 13-335 (349)
160 3o4h_A Acylamino-acid-releasin 99.8 7.2E-20 2.5E-24 187.9 19.9 235 183-432 21-274 (582)
161 3fvz_A Peptidyl-glycine alpha- 99.8 7.3E-18 2.5E-22 160.2 32.1 242 183-435 23-323 (329)
162 3scy_A Hypothetical bacterial 99.8 1.9E-17 6.3E-22 159.3 33.4 263 144-412 52-360 (361)
163 1z68_A Fibroblast activation p 99.8 1.3E-18 4.3E-23 183.2 22.1 282 144-436 62-445 (719)
164 1q7f_A NHL, brain tumor CG1071 99.8 2.3E-16 7.8E-21 146.5 33.8 238 181-436 27-282 (286)
165 3c5m_A Oligogalacturonate lyas 99.8 1.6E-17 5.4E-22 161.3 25.3 275 143-433 37-381 (396)
166 4a5s_A Dipeptidyl peptidase 4 99.8 5E-17 1.7E-21 171.5 29.0 275 146-433 21-397 (740)
167 3pe7_A Oligogalacturonate lyas 99.8 3.5E-17 1.2E-21 158.7 24.6 261 166-437 15-332 (388)
168 4a5s_A Dipeptidyl peptidase 4 99.8 7.1E-18 2.4E-22 178.0 21.2 241 185-436 18-355 (740)
169 2oiz_A Aromatic amine dehydrog 99.8 2.5E-16 8.7E-21 151.5 27.1 267 160-440 30-342 (361)
170 3azo_A Aminopeptidase; POP fam 99.8 1.6E-16 5.5E-21 165.4 27.5 281 143-436 25-371 (662)
171 2oiz_A Aromatic amine dehydrog 99.8 3.5E-16 1.2E-20 150.5 27.8 260 146-416 54-360 (361)
172 2dg1_A DRP35, lactonase; beta 99.8 7.7E-16 2.6E-20 146.1 29.7 270 145-433 9-313 (333)
173 2xdw_A Prolyl endopeptidase; a 99.7 8.4E-16 2.9E-20 161.4 29.8 265 162-436 99-416 (710)
174 2gop_A Trilobed protease; beta 99.7 1.7E-15 5.8E-20 144.5 28.7 240 160-433 42-330 (347)
175 1jof_A Carboxy-CIS,CIS-muconat 99.7 6.7E-16 2.3E-20 148.8 24.6 246 144-393 42-342 (365)
176 3e5z_A Putative gluconolactona 99.7 2E-14 7E-19 134.0 30.3 237 178-438 22-288 (296)
177 1qks_A Cytochrome CD1 nitrite 99.7 3.9E-14 1.3E-18 143.5 34.5 268 155-435 171-478 (567)
178 3c5m_A Oligogalacturonate lyas 99.7 6.3E-16 2.2E-20 150.0 19.3 259 164-436 13-331 (396)
179 3azo_A Aminopeptidase; POP fam 99.7 1.8E-15 6E-20 157.6 22.5 242 179-433 19-322 (662)
180 1rwi_B Serine/threonine-protei 99.7 2.4E-14 8.2E-19 131.3 27.0 238 185-437 25-267 (270)
181 1q7f_A NHL, brain tumor CG1071 99.7 7.8E-14 2.7E-18 129.2 30.3 231 144-394 32-282 (286)
182 2z2n_A Virginiamycin B lyase; 99.7 2.4E-12 8.3E-17 119.4 40.0 271 143-434 16-295 (299)
183 2bkl_A Prolyl endopeptidase; m 99.7 3E-15 1E-19 156.8 22.4 263 161-437 94-400 (695)
184 3dsm_A Uncharacterized protein 99.7 7.1E-14 2.4E-18 132.6 29.9 261 160-439 16-306 (328)
185 1qks_A Cytochrome CD1 nitrite 99.7 3.7E-13 1.3E-17 136.4 34.7 287 145-442 200-546 (567)
186 3no2_A Uncharacterized protein 99.6 2E-13 7E-18 125.9 29.0 211 194-422 4-231 (276)
187 3fvz_A Peptidyl-glycine alpha- 99.6 5.5E-13 1.9E-17 126.4 32.4 216 162-391 70-321 (329)
188 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 6.8E-13 2.3E-17 124.4 31.2 239 182-434 16-299 (314)
189 2dg1_A DRP35, lactonase; beta 99.6 9.8E-14 3.3E-18 131.5 23.9 236 184-433 6-262 (333)
190 2qc5_A Streptogramin B lactona 99.6 2.1E-11 7E-16 113.2 38.8 271 143-432 21-298 (300)
191 3no2_A Uncharacterized protein 99.6 6.5E-13 2.2E-17 122.5 28.0 208 153-378 7-231 (276)
192 2mad_H Methylamine dehydrogena 99.6 9.4E-12 3.2E-16 119.9 36.5 263 162-440 48-356 (373)
193 3dsm_A Uncharacterized protein 99.6 3.6E-13 1.2E-17 127.6 26.2 247 146-411 48-319 (328)
194 2xdw_A Prolyl endopeptidase; a 99.6 9E-13 3.1E-17 138.3 30.2 255 129-394 110-416 (710)
195 2z2n_A Virginiamycin B lyase; 99.6 1.5E-11 5E-16 114.1 34.9 240 179-433 10-254 (299)
196 1rwi_B Serine/threonine-protei 99.6 1.3E-12 4.3E-17 119.8 26.4 237 143-395 25-267 (270)
197 2gop_A Trilobed protease; beta 99.6 4.9E-13 1.7E-17 127.3 24.6 228 144-404 61-341 (347)
198 1yr2_A Prolyl oligopeptidase; 99.6 4.1E-13 1.4E-17 141.6 26.0 265 162-436 134-443 (741)
199 1xip_A Nucleoporin NUP159; bet 99.6 2.1E-12 7.3E-17 123.6 27.7 277 143-438 39-386 (388)
200 3sjl_D Methylamine dehydrogena 99.5 7.6E-12 2.6E-16 119.4 29.3 269 160-443 58-372 (386)
201 3e5z_A Putative gluconolactona 99.5 6.7E-12 2.3E-16 116.8 28.2 234 144-395 30-289 (296)
202 2mad_H Methylamine dehydrogena 99.5 6.4E-11 2.2E-15 114.0 35.1 231 160-399 96-357 (373)
203 3hrp_A Uncharacterized protein 99.5 2.1E-11 7.2E-16 119.0 31.7 235 184-432 131-408 (409)
204 2qc5_A Streptogramin B lactona 99.5 1.6E-10 5.5E-15 107.1 36.1 239 179-433 15-259 (300)
205 3sjl_D Methylamine dehydrogena 99.5 2.3E-11 7.7E-16 116.1 28.7 246 160-414 108-384 (386)
206 3g4e_A Regucalcin; six bladed 99.5 1E-10 3.5E-15 109.0 31.1 227 182-423 11-261 (297)
207 3iuj_A Prolyl endopeptidase; h 99.5 4E-12 1.4E-16 132.9 23.7 243 182-436 127-407 (693)
208 3c75_H MADH, methylamine dehyd 99.5 3E-11 1E-15 117.3 27.0 266 161-441 99-409 (426)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 7.8E-11 2.7E-15 110.2 28.4 239 144-392 20-299 (314)
210 1xip_A Nucleoporin NUP159; bet 99.4 1.7E-12 5.9E-17 124.3 16.7 171 185-378 39-232 (388)
211 2bkl_A Prolyl endopeptidase; m 99.4 1.7E-11 5.8E-16 128.3 24.9 202 225-433 119-348 (695)
212 1yr2_A Prolyl oligopeptidase; 99.4 1.7E-11 5.7E-16 129.3 24.4 253 129-394 148-443 (741)
213 2ghs_A AGR_C_1268P; regucalcin 99.4 4.2E-10 1.4E-14 106.3 30.1 217 186-423 51-291 (326)
214 1kb0_A Quinohemoprotein alcoho 99.4 5.7E-11 2E-15 123.3 23.6 283 151-444 77-517 (677)
215 3g4e_A Regucalcin; six bladed 99.4 1.7E-09 6E-14 100.6 30.5 225 144-379 15-261 (297)
216 3dr2_A Exported gluconolactona 99.4 4.9E-10 1.7E-14 104.7 26.8 228 181-428 42-301 (305)
217 3c75_H MADH, methylamine dehyd 99.4 2.8E-10 9.6E-15 110.5 25.2 235 159-399 147-409 (426)
218 1yiq_A Quinohemoprotein alcoho 99.3 2.3E-10 7.9E-15 119.1 25.4 283 151-444 70-515 (689)
219 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.8E-09 1.3E-13 101.7 30.0 269 151-442 53-345 (376)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.4E-09 1.2E-13 102.0 28.6 260 148-431 100-375 (376)
221 1mda_H Methylamine dehydrogena 99.3 5.7E-10 2E-14 106.5 22.3 238 162-413 47-366 (368)
222 2ghs_A AGR_C_1268P; regucalcin 99.3 2.8E-08 9.5E-13 93.7 32.7 220 145-379 52-291 (326)
223 1kb0_A Quinohemoprotein alcoho 99.2 2.1E-09 7.2E-14 111.6 25.8 280 150-434 127-567 (677)
224 3hrp_A Uncharacterized protein 99.2 8E-09 2.7E-13 100.7 28.4 230 144-390 133-408 (409)
225 1npe_A Nidogen, entactin; glyc 99.2 5.6E-08 1.9E-12 88.7 31.0 247 155-416 4-263 (267)
226 2qe8_A Uncharacterized protein 99.2 7.8E-09 2.7E-13 98.3 25.9 242 171-427 7-314 (343)
227 3hxj_A Pyrrolo-quinoline quino 99.2 2E-09 6.7E-14 101.3 21.5 259 147-435 65-325 (330)
228 1fwx_A Nitrous oxide reductase 99.2 3E-09 1E-13 105.7 23.1 287 131-436 4-433 (595)
229 1yiq_A Quinohemoprotein alcoho 99.2 2.8E-09 9.7E-14 110.8 24.0 267 150-419 120-533 (689)
230 3dr2_A Exported gluconolactona 99.2 1.3E-08 4.3E-13 95.1 25.9 217 145-378 48-295 (305)
231 2hz6_A Endoplasmic reticulum t 99.2 3.1E-11 1.1E-15 116.1 7.9 258 151-433 9-278 (369)
232 2ece_A 462AA long hypothetical 99.2 4.5E-08 1.6E-12 94.1 29.4 252 162-422 44-399 (462)
233 1kv9_A Type II quinohemoprotei 99.1 2.8E-08 9.5E-13 103.0 27.3 282 151-443 66-497 (668)
234 2hz6_A Endoplasmic reticulum t 99.1 6.6E-11 2.3E-15 113.9 6.8 203 194-417 8-217 (369)
235 3hxj_A Pyrrolo-quinoline quino 99.1 2E-09 7E-14 101.2 16.3 257 151-438 30-287 (330)
236 1fwx_A Nitrous oxide reductase 99.1 4.9E-08 1.7E-12 97.1 26.0 234 154-393 104-432 (595)
237 2iwa_A Glutamine cyclotransfer 99.1 1.5E-07 5.1E-12 85.0 26.4 193 185-392 22-237 (266)
238 2ad6_A Methanol dehydrogenase 99.1 6.7E-08 2.3E-12 98.2 26.6 281 152-444 63-504 (571)
239 3iuj_A Prolyl endopeptidase; h 99.0 1.2E-08 4.1E-13 106.6 21.0 203 225-435 127-360 (693)
240 1mda_H Methylamine dehydrogena 99.0 1.5E-08 5E-13 96.7 19.7 226 206-442 47-354 (368)
241 2ece_A 462AA long hypothetical 99.0 2E-07 6.9E-12 89.6 25.7 217 154-378 98-399 (462)
242 1w6s_A Methanol dehydrogenase 99.0 2.4E-07 8.3E-12 94.1 27.6 282 152-443 63-512 (599)
243 2qe8_A Uncharacterized protein 99.0 7.8E-08 2.7E-12 91.3 21.9 192 182-378 65-309 (343)
244 2iwa_A Glutamine cyclotransfer 99.0 3.1E-07 1.1E-11 83.0 24.0 193 144-350 23-238 (266)
245 2fp8_A Strictosidine synthase; 99.0 6.1E-07 2.1E-11 84.2 27.2 238 184-436 19-315 (322)
246 1kv9_A Type II quinohemoprotei 98.9 3.5E-07 1.2E-11 94.8 27.3 281 151-434 117-552 (668)
247 1flg_A Protein (quinoprotein e 98.9 8.8E-07 3E-11 90.1 28.5 280 152-444 69-526 (582)
248 1npe_A Nidogen, entactin; glyc 98.9 5E-06 1.7E-10 75.6 29.7 233 195-440 1-244 (267)
249 2p4o_A Hypothetical protein; p 98.9 9.3E-06 3.2E-10 75.5 31.7 239 176-425 25-279 (306)
250 2ad6_A Methanol dehydrogenase 98.9 9.9E-07 3.4E-11 89.6 26.4 260 150-419 114-522 (571)
251 3nol_A Glutamine cyclotransfer 98.9 1.4E-06 4.6E-11 77.9 23.9 178 186-378 45-243 (262)
252 3mbr_X Glutamine cyclotransfer 98.8 2E-06 6.8E-11 76.1 24.1 193 130-335 9-223 (243)
253 4a2l_A BT_4663, two-component 98.8 2.7E-05 9.1E-10 82.5 37.2 270 142-435 263-572 (795)
254 4a2l_A BT_4663, two-component 98.8 2E-05 6.9E-10 83.4 33.8 274 144-435 175-481 (795)
255 3nol_A Glutamine cyclotransfer 98.8 5.3E-06 1.8E-10 74.1 24.4 190 216-424 32-245 (262)
256 3v64_C Agrin; beta propeller, 98.7 7.7E-05 2.6E-09 70.7 33.7 239 146-400 38-283 (349)
257 3v65_B Low-density lipoprotein 98.7 3.4E-05 1.2E-09 74.2 30.9 237 187-438 80-322 (386)
258 2xzh_A Clathrin heavy chain 1; 98.7 0.00016 5.6E-09 66.0 35.4 276 145-438 29-336 (365)
259 1ijq_A LDL receptor, low-densi 98.7 0.00013 4.3E-09 68.1 33.6 230 154-400 3-246 (316)
260 3v64_C Agrin; beta propeller, 98.7 6E-05 2E-09 71.4 31.6 237 186-437 36-278 (349)
261 3v65_B Low-density lipoprotein 98.7 5.5E-05 1.9E-09 72.8 31.3 248 148-411 83-337 (386)
262 3nok_A Glutaminyl cyclase; bet 98.7 4.2E-06 1.4E-10 74.8 21.3 191 216-423 44-254 (268)
263 3p5b_L Low density lipoprotein 98.7 0.00023 7.9E-09 68.7 35.7 245 151-411 82-339 (400)
264 1w6s_A Methanol dehydrogenase 98.7 1.8E-05 6.1E-10 80.4 28.9 264 154-422 124-535 (599)
265 1k3i_A Galactose oxidase precu 98.7 1.2E-06 4.2E-11 90.6 20.8 252 162-423 220-530 (656)
266 3mbr_X Glutamine cyclotransfer 98.7 1.9E-05 6.3E-10 69.9 25.2 180 184-378 21-222 (243)
267 3nok_A Glutaminyl cyclase; bet 98.7 1.4E-05 4.6E-10 71.5 24.2 179 184-378 55-253 (268)
268 1flg_A Protein (quinoprotein e 98.7 2E-05 6.7E-10 80.1 28.3 269 150-422 116-548 (582)
269 3qqz_A Putative uncharacterize 98.6 8.3E-05 2.9E-09 66.6 29.0 206 178-390 21-251 (255)
270 3v9f_A Two-component system se 98.6 9.5E-05 3.3E-09 78.1 33.7 272 143-435 259-569 (781)
271 3v9f_A Two-component system se 98.6 0.00014 4.8E-09 76.8 33.7 276 143-435 212-525 (781)
272 3sov_A LRP-6, low-density lipo 98.6 8.9E-05 3.1E-09 69.2 28.6 236 152-401 4-247 (318)
273 1ijq_A LDL receptor, low-densi 98.6 0.00029 1E-08 65.6 31.8 228 197-437 3-241 (316)
274 1bpo_A Protein (clathrin); cla 98.6 0.00061 2.1E-08 64.7 37.1 276 145-438 28-335 (494)
275 3sov_A LRP-6, low-density lipo 98.5 0.00012 4.1E-09 68.3 27.8 231 197-438 6-242 (318)
276 2fp8_A Strictosidine synthase; 98.5 0.00017 5.9E-09 67.2 28.9 233 145-391 22-312 (322)
277 3p5b_L Low density lipoprotein 98.5 0.00032 1.1E-08 67.7 30.9 232 196-439 84-325 (400)
278 2p4o_A Hypothetical protein; p 98.5 0.0002 6.7E-09 66.4 28.4 222 143-379 33-277 (306)
279 1k3i_A Galactose oxidase precu 98.4 1.9E-05 6.4E-10 81.7 21.8 262 164-436 169-499 (656)
280 2xbg_A YCF48-like protein; pho 98.4 0.0015 5.1E-08 61.1 34.5 269 143-431 37-319 (327)
281 2xe4_A Oligopeptidase B; hydro 98.4 7.9E-05 2.7E-09 78.3 24.6 242 185-436 175-460 (751)
282 4hw6_A Hypothetical protein, I 98.3 0.00024 8.1E-09 69.4 25.9 235 185-433 140-432 (433)
283 3m0c_C LDL receptor, low-densi 98.3 0.0012 4.2E-08 69.1 32.3 235 150-400 393-640 (791)
284 3tc9_A Hypothetical hydrolase; 98.3 0.00029 9.9E-09 68.7 25.9 235 185-433 138-429 (430)
285 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0037 1.3E-07 63.9 34.2 233 152-399 6-244 (628)
286 2xe4_A Oligopeptidase B; hydro 98.3 0.00021 7.1E-09 75.1 25.5 237 143-394 175-460 (751)
287 3m0c_C LDL receptor, low-densi 98.2 0.0018 6.1E-08 67.9 31.2 230 197-438 397-636 (791)
288 1n7d_A LDL receptor, low-densi 98.2 1.7E-05 5.8E-10 82.4 14.5 244 153-412 378-634 (699)
289 4a0p_A LRP6, LRP-6, low-densit 98.1 0.007 2.4E-07 61.8 31.8 229 197-437 8-240 (628)
290 4hw6_A Hypothetical protein, I 98.1 0.0028 9.5E-08 61.7 27.1 236 144-390 141-431 (433)
291 3kya_A Putative phosphatase; s 98.1 0.0041 1.4E-07 61.1 28.0 248 185-440 140-481 (496)
292 3tc9_A Hypothetical hydrolase; 98.1 0.0031 1.1E-07 61.4 27.4 234 145-390 140-428 (430)
293 3s94_A LRP-6, low-density lipo 98.0 0.0064 2.2E-07 62.0 29.7 232 153-398 10-249 (619)
294 2ism_A Putative oxidoreductase 98.0 0.0046 1.6E-07 58.4 26.8 232 183-422 30-333 (352)
295 3ei3_A DNA damage-binding prot 98.0 0.028 9.5E-07 61.5 35.8 275 144-433 516-872 (1158)
296 3amr_A 3-phytase; beta-propell 98.0 0.0021 7.1E-08 59.9 23.2 184 237-433 41-262 (355)
297 2xbg_A YCF48-like protein; pho 98.0 0.0051 1.7E-07 57.4 26.2 232 141-389 79-319 (327)
298 3qqz_A Putative uncharacterize 98.0 0.0085 2.9E-07 53.5 28.1 198 225-432 25-249 (255)
299 3s94_A LRP-6, low-density lipo 97.9 0.0072 2.5E-07 61.7 28.0 227 203-438 16-247 (619)
300 1n7d_A LDL receptor, low-densi 97.9 7.6E-05 2.6E-09 77.5 12.6 224 204-438 385-618 (699)
301 3amr_A 3-phytase; beta-propell 97.9 0.0074 2.5E-07 56.2 24.3 198 194-400 39-272 (355)
302 3a9g_A Putative uncharacterize 97.8 0.025 8.7E-07 53.3 29.7 234 183-422 28-330 (354)
303 1xi4_A Clathrin heavy chain; a 97.8 0.0037 1.3E-07 68.0 23.2 277 144-438 27-335 (1630)
304 2vpj_A Kelch-like protein 12; 97.8 0.0027 9.1E-08 58.3 19.7 220 161-394 31-280 (301)
305 2vpj_A Kelch-like protein 12; 97.7 0.0041 1.4E-07 57.1 20.5 228 194-435 14-279 (301)
306 2p9w_A MAL S 1 allergenic prot 97.7 0.028 9.7E-07 51.8 25.8 157 141-298 12-215 (334)
307 2xn4_A Kelch-like protein 2; s 97.7 0.0035 1.2E-07 57.6 19.4 220 161-394 30-278 (302)
308 3ii7_A Kelch-like protein 7; p 97.7 0.0049 1.7E-07 56.7 19.8 220 160-394 23-274 (306)
309 3kya_A Putative phosphatase; s 97.5 0.083 2.9E-06 51.8 27.2 245 145-397 142-480 (496)
310 2xzh_A Clathrin heavy chain 1; 97.5 0.058 2E-06 49.4 24.3 156 143-301 108-293 (365)
311 3ei3_A DNA damage-binding prot 97.5 0.15 5.2E-06 55.8 31.2 263 154-433 708-1061(1158)
312 1zgk_A Kelch-like ECH-associat 97.5 0.0084 2.9E-07 55.3 18.4 220 161-394 39-289 (308)
313 2xn4_A Kelch-like protein 2; s 97.4 0.0087 3E-07 54.9 18.2 228 195-436 16-278 (302)
314 4asc_A Kelch repeat and BTB do 97.4 0.012 4E-07 54.4 19.1 184 160-354 12-226 (315)
315 2g8s_A Glucose/sorbosone dehyd 97.4 0.085 2.9E-06 49.6 28.3 243 184-433 18-351 (353)
316 3ii7_A Kelch-like protein 7; p 97.4 0.011 3.6E-07 54.4 18.5 226 196-435 13-273 (306)
317 2woz_A Kelch repeat and BTB do 97.4 0.027 9.3E-07 52.0 21.0 182 161-354 24-236 (318)
318 1bpo_A Protein (clathrin); cla 97.4 0.11 3.7E-06 49.6 25.4 155 144-301 108-292 (494)
319 3sre_A PON1, serum paraoxonase 97.4 0.028 9.6E-07 52.8 20.7 165 203-378 81-285 (355)
320 2ism_A Putative oxidoreductase 97.4 0.099 3.4E-06 49.1 26.9 223 145-377 34-332 (352)
321 2p9w_A MAL S 1 allergenic prot 97.3 0.027 9.2E-07 51.9 19.6 161 265-434 10-215 (334)
322 3pbp_A Nucleoporin NUP82; beta 97.2 0.036 1.2E-06 52.7 19.5 142 151-294 31-208 (452)
323 3ott_A Two-component system se 97.1 0.4 1.4E-05 50.1 33.0 266 143-433 64-351 (758)
324 4asc_A Kelch repeat and BTB do 97.0 0.047 1.6E-06 50.3 18.6 211 197-424 7-253 (315)
325 3ott_A Two-component system se 97.0 0.42 1.4E-05 49.9 29.2 228 183-435 21-261 (758)
326 3sre_A PON1, serum paraoxonase 97.0 0.045 1.6E-06 51.3 18.2 160 269-434 51-252 (355)
327 2uvk_A YJHT; unknown function, 97.0 0.083 2.9E-06 49.5 20.3 84 160-245 30-128 (357)
328 3das_A Putative oxidoreductase 96.9 0.27 9.4E-06 45.8 32.3 237 179-422 27-326 (347)
329 1zgk_A Kelch-like ECH-associat 96.9 0.08 2.7E-06 48.5 18.6 181 161-353 90-291 (308)
330 2uvk_A YJHT; unknown function, 96.8 0.024 8.1E-07 53.3 14.7 238 194-442 19-350 (357)
331 2be1_A Serine/threonine-protei 96.8 0.027 9.3E-07 52.4 14.4 200 152-363 11-246 (339)
332 2zwa_A Leucine carboxyl methyl 96.7 0.073 2.5E-06 55.1 18.8 190 161-353 412-639 (695)
333 3s25_A Hypothetical 7-bladed b 96.7 0.32 1.1E-05 44.5 21.2 212 193-435 23-256 (302)
334 2woz_A Kelch repeat and BTB do 96.7 0.099 3.4E-06 48.1 17.7 224 197-435 18-288 (318)
335 3pbp_A Nucleoporin NUP82; beta 96.6 0.05 1.7E-06 51.8 15.1 107 322-435 27-159 (452)
336 3sbq_A Nitrous-oxide reductase 96.5 0.75 2.6E-05 45.3 25.7 288 130-435 58-479 (638)
337 3sbq_A Nitrous-oxide reductase 96.5 0.69 2.3E-05 45.6 22.0 231 198-435 73-409 (638)
338 2zwa_A Leucine carboxyl methyl 96.5 0.27 9.2E-06 50.8 20.9 201 193-396 396-639 (695)
339 2be1_A Serine/threonine-protei 96.2 0.25 8.4E-06 45.9 17.0 106 196-301 11-133 (339)
340 3das_A Putative oxidoreductase 96.2 0.29 9.8E-06 45.7 17.6 152 263-421 27-219 (347)
341 1cru_A Protein (soluble quinop 96.1 1.2 4E-05 43.3 30.7 104 184-287 27-163 (454)
342 2g8s_A Glucose/sorbosone dehyd 95.9 0.23 8E-06 46.5 15.8 151 268-420 18-214 (353)
343 3a9g_A Putative uncharacterize 95.6 1.4 4.9E-05 41.1 26.7 227 144-377 31-329 (354)
344 1cru_A Protein (soluble quinop 95.5 1.3 4.5E-05 43.0 19.6 107 267-377 26-161 (454)
345 1xi4_A Clathrin heavy chain; a 95.3 0.6 2.1E-05 51.3 17.3 155 144-301 108-292 (1630)
346 3s25_A Hypothetical 7-bladed b 95.0 2 6.8E-05 39.1 29.9 236 160-432 36-291 (302)
347 1tl2_A L10, protein (tachylect 94.5 0.66 2.2E-05 40.0 12.4 134 153-293 6-158 (236)
348 1tl2_A L10, protein (tachylect 94.4 2.2 7.6E-05 36.7 19.4 153 268-435 41-209 (236)
349 3qhy_B Beta-lactamase inhibito 92.3 6.1 0.00021 35.4 19.6 238 144-415 26-265 (282)
350 3qhy_B Beta-lactamase inhibito 92.1 6.3 0.00022 35.3 18.2 224 185-437 25-249 (282)
351 2wg3_C Hedgehog-interacting pr 89.6 16 0.00053 35.4 26.2 248 184-435 14-372 (463)
352 3b7f_A Glycosyl hydrolase, BNR 87.5 19 0.00064 33.7 28.6 213 152-377 23-296 (394)
353 4hvt_A Ritya.17583.B, post-pro 86.4 32 0.0011 35.3 21.1 232 191-433 137-429 (711)
354 3kci_A Probable E3 ubiquitin-p 85.6 24 0.00081 33.1 28.9 237 146-392 57-345 (389)
355 2rqw_B 24-meric peptide from s 84.2 0.47 1.6E-05 24.7 1.4 11 27-37 4-14 (26)
356 4d9s_A UVB-resistance protein 82.9 32 0.0011 32.4 33.5 276 144-434 18-357 (406)
357 4gq2_M Nucleoporin NUP120; bet 81.2 28 0.00097 37.1 15.2 33 269-301 237-269 (950)
358 3kci_A Probable E3 ubiquitin-p 79.5 41 0.0014 31.4 24.5 272 151-435 10-346 (389)
359 2wg3_C Hedgehog-interacting pr 76.4 56 0.0019 31.4 15.6 107 316-425 14-160 (463)
360 4gq2_M Nucleoporin NUP120; bet 70.0 14 0.00048 39.5 9.1 39 317-358 237-275 (950)
361 3q6k_A 43.2 kDa salivary prote 66.1 86 0.0029 29.2 21.9 187 161-376 123-340 (381)
362 3mvd_K Regulator of chromosome 64.1 96 0.0033 29.1 35.0 268 151-435 33-375 (423)
363 3zwu_A Alkaline phosphatase PH 63.5 31 0.0011 34.5 9.5 61 361-421 477-548 (592)
364 3f7f_A Nucleoporin NUP120; nuc 62.8 23 0.00078 36.2 8.4 71 316-391 222-304 (729)
365 4a9v_A PHOX; hydrolase, beta-p 59.8 51 0.0017 32.7 10.1 63 360-422 476-549 (592)
366 4hvt_A Ritya.17583.B, post-pro 59.3 1.6E+02 0.0055 30.1 22.9 255 128-391 111-429 (711)
367 1suu_A DNA gyrase subunit A; t 55.7 1.2E+02 0.004 27.3 20.1 192 236-435 8-232 (312)
368 4fhn_B Nucleoporin NUP120; pro 52.4 1.3E+02 0.0043 32.9 12.8 33 269-301 239-271 (1139)
369 1a12_A RCC1, regulator of chro 51.4 1.6E+02 0.0053 27.5 26.4 231 144-391 61-364 (413)
370 1zi0_A DNA gyrase subunit A; b 50.1 1.4E+02 0.0048 26.7 20.0 190 237-434 4-226 (307)
371 3no0_A DNA gyrase subunit A; D 49.5 1.4E+02 0.0047 26.3 18.5 154 278-438 79-250 (276)
372 4fhn_B Nucleoporin NUP120; pro 48.5 67 0.0023 35.0 9.9 38 185-222 239-276 (1139)
373 2zux_A YESW protein; beta-prop 44.7 2.4E+02 0.0083 27.8 25.8 247 163-436 231-534 (591)
374 3zwu_A Alkaline phosphatase PH 42.3 83 0.0028 31.4 8.6 61 318-378 478-549 (592)
375 3uc1_A DNA gyrase subunit A; D 41.8 2E+02 0.0068 26.0 19.8 156 140-298 41-228 (327)
376 3b7f_A Glycosyl hydrolase, BNR 41.3 2.1E+02 0.0073 26.2 26.0 149 143-295 56-259 (394)
377 3of7_A Regulator of chromosome 40.9 2.4E+02 0.0084 26.8 27.7 152 143-298 68-285 (473)
378 4a9v_A PHOX; hydrolase, beta-p 40.7 91 0.0031 30.9 8.4 40 162-202 510-549 (592)
379 3mvd_K Regulator of chromosome 40.2 2.3E+02 0.008 26.3 28.5 236 144-392 77-374 (423)
380 3f7f_A Nucleoporin NUP120; nuc 38.7 50 0.0017 33.7 6.4 37 185-223 223-259 (729)
381 3uc1_A DNA gyrase subunit A; D 36.8 2.4E+02 0.0082 25.5 24.9 236 196-437 4-282 (327)
382 3no0_A DNA gyrase subunit A; D 36.1 2.2E+02 0.0076 24.9 21.2 153 139-298 22-196 (276)
383 4d9s_A UVB-resistance protein 35.8 2.7E+02 0.0092 25.8 30.9 197 143-349 69-305 (406)
384 1sqj_A OXG-RCBH, oligoxylogluc 29.7 4.8E+02 0.016 26.8 14.1 155 267-429 14-196 (789)
385 3l6v_A GYRA, DNA gyrase subuni 29.0 3.4E+02 0.012 24.9 26.0 237 191-434 3-316 (370)
386 1zi0_A DNA gyrase subunit A; b 28.7 3.1E+02 0.011 24.3 26.9 238 193-436 1-279 (307)
387 1wp5_A Topoisomerase IV; broke 27.5 3.4E+02 0.012 24.4 23.4 236 193-436 3-279 (323)
388 1suu_A DNA gyrase subunit A; t 25.0 3.7E+02 0.013 23.9 27.6 236 192-434 5-283 (312)
389 3of7_A Regulator of chromosome 23.8 4.7E+02 0.016 24.8 25.5 191 227-434 148-405 (473)
No 1
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7e-67 Score=517.07 Aligned_cols=398 Identities=45% Similarity=0.828 Sum_probs=297.6
Q ss_pred cCCCCCCccccccceecCCCCccccccccCCCccHHHHHHHHHHHhC---CCCCceeeccCCCCCCCcCCCCcCCCcccC
Q 012679 33 PNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFN---MNRTRILAFKNKPPTPVELIPEMHSSSASA 109 (458)
Q Consensus 33 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 109 (458)
|+|++||||+|+|++++++...+ ..++.+++|++++++.+. .++.|||+|+++||.++....+.....++.
T Consensus 2 p~r~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 75 (420)
T 4gga_A 2 PHRSAAQMEVASFLLSKENQPEN------SQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQ 75 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCchhhhhccccccCCccc------ccCcchHHHHHHHHhhccccccccceEEeccCCCCCCCcccccCcceeccc
Confidence 99999999999999987655433 246778899999998876 346799999999887766655554444432
Q ss_pred CccccccccCCCCCCCCCCCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEE
Q 012679 110 SSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSV 189 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v 189 (458)
. ....++++..|+||..|+++|+||++.+|||+|+++|++++++|+|.|++|+|||+.+|+...+..+.+|...|++|
T Consensus 76 ~--~~~~~~~~~~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv 153 (420)
T 4gga_A 76 K--ATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSV 153 (420)
T ss_dssp ------------CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEE
T ss_pred c--cCCCCccCCCcccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEE
Confidence 2 22345567789999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc
Q 012679 190 NWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE 269 (458)
Q Consensus 190 ~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~ 269 (458)
+|+|+|++||+|+.||.|+|||+.+++.+..+.+ |...+.+++|++.+|++|+.|+.+.+||.......+..+.+|...
T Consensus 154 ~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~-h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~ 232 (420)
T 4gga_A 154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 232 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred EECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC-CCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccc
Confidence 9999999999999999999999999999999987 999999999999999999999999999999888878889999999
Q ss_pred eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
++.+.|+|+++++++++.|+.|++||...+.... ..+.....|...|.+++|+|++..++++++|+.|++|++||+.+
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~--~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW--VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS--CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred eeeeeecCCCCeeeeeeccccceEEeeccccccc--eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence 9999999999999999999999999998765422 22566778999999999999999999998888999999999999
Q ss_pred CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 012679 350 GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429 (458)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~i 429 (458)
++++..+..+..++++.|+++++.+++++|+.|+.|+|||+++++++.++.+|.+.|++++|+|||++|+||+.||+|+|
T Consensus 311 ~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 311 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp TEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred cccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 99999999999999999999999999998989999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCccccc
Q 012679 430 WNVFGAPQVISK 441 (458)
Q Consensus 430 W~~~~~~~~~~~ 441 (458)
||+++..+..+.
T Consensus 391 Wdv~~~~~~~~~ 402 (420)
T 4gga_A 391 WRCFELDPARRR 402 (420)
T ss_dssp ECCSCSSCC---
T ss_pred EECCCCCccchh
Confidence 999987655443
No 2
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-59 Score=457.67 Aligned_cols=385 Identities=44% Similarity=0.820 Sum_probs=297.9
Q ss_pred ceeccCCCCCCccccccceecCCCCccccccccCCCccHHHHHHHHHHHhCCC-CCceeeccCCCCCCCcCCCCcCCCcc
Q 012679 29 DRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMN-RTRILAFKNKPPTPVELIPEMHSSSA 107 (458)
Q Consensus 29 dr~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~~~~~~~~~~~~~~~~~~~~ 107 (458)
|||||+|+ |||.|+|++++++ ...+|++.|+++++.+ +.|||.|...||.... +......+
T Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~--~~~~~~~~ 62 (401)
T 4aez_A 1 DRFIPSRP--NTANAFVNSISSD--------------VPFDYSESVAEACGFDLNTRVLAFKLDAPEAKK--PVDLRTQH 62 (401)
T ss_dssp -----------------------------------------------------CCEEEEEECSCCCCCCC--CCC-----
T ss_pred CCcCCCch--hhhHHHHhhcCCc--------------chHHHHHHHHHHcCCCccCcEEeeCCCCCCCcC--cccchhhc
Confidence 89999999 9999999986431 1346999999999854 7899999998876432 22222222
Q ss_pred cCCccccccccCCCCCCCCCCCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEE
Q 012679 108 SASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVT 187 (458)
Q Consensus 108 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~ 187 (458)
.. .......+..|.+|..|++++++++..+++++++++|+++.+++++.|+.|++||+.+++....... .|...|+
T Consensus 63 ~~---~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~ 138 (401)
T 4aez_A 63 NR---PQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET-DESTYVA 138 (401)
T ss_dssp ---------------CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEE
T ss_pred cc---ccCCccccccCcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEE
Confidence 10 0111113456889999999999999999999999999999999999999999999999987555443 3788999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc
Q 012679 188 SVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN 267 (458)
Q Consensus 188 ~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~ 267 (458)
+++|+|++++|++|+.||.|++||+.+++.+..+.. |...|.+++|++++|++|+.||.|++||++........+.+|.
T Consensus 139 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 217 (401)
T 4aez_A 139 SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG-HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS 217 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC-CCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCC
Confidence 999999999999999999999999999999999986 9999999999999999999999999999997776788899999
Q ss_pred cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT 347 (458)
Q Consensus 268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~ 347 (458)
..|++++|+|++++|++|+.||.|++||++.... +..+..|...|.+++|+|++..++++++|+.|+.|++||+
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 9999999999999999999999999999998665 7778889999999999999999999987778999999999
Q ss_pred CCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679 348 HTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--KMAELSGHTSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
.+++++..+.++..+.+++|+|+++++++++|+.+|.|++||+.+++ ....+.+|...|.+++|+|+|.+|++++.||
T Consensus 292 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 292 ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred CCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 99999999999999999999999999999888899999999999854 4445779999999999999999999999999
Q ss_pred cEEEEecCCCCcccccC
Q 012679 426 TLRFWNVFGAPQVISKS 442 (458)
Q Consensus 426 ~i~iW~~~~~~~~~~~~ 442 (458)
.|++|++.+++...+..
T Consensus 372 ~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 372 NLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEECCC--------
T ss_pred cEEEEECCCCccccccc
Confidence 99999999887765543
No 3
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.6e-52 Score=394.57 Aligned_cols=315 Identities=53% Similarity=0.975 Sum_probs=291.7
Q ss_pred CCCCCCCCCCCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE
Q 012679 119 NKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI 198 (458)
Q Consensus 119 ~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l 198 (458)
+|..|.||..|+|+||||++.+|||+|+++|++++++|++.|++|+|||+.+++......+.+|...|++++|+|+|++|
T Consensus 3 ~~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred CCCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 35568999999999999999999999999999999999999999999999999987777888899999999999999999
Q ss_pred EEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679 199 AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS 278 (458)
Q Consensus 199 a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd 278 (458)
|+|+.||.|++||+.+++.+..+.+ |...+.++.+++..+++|+.++.+.+|+.......+..+.+|...+..+.++++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~-h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEECCCcEEEeecCCceeEEEecC-ccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence 9999999999999999999999987 999999999999999999999999999999888778889999999999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679 279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358 (458)
Q Consensus 279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~ 358 (458)
+++|++++.||.|++||+++++.... .......|...|.+++++|++..++.+++|+.++.|++||............
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~ 239 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSC--CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEecCcceeEEECCCCccccc--ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc
Confidence 99999999999999999987654221 2455567888999999999999988777777999999999999999999999
Q ss_pred CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 359 ~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
...+..+.|++++..+++++|..|+.|+|||+.+++++.++.+|.+.|++++|+|||++|+||+.||+|+|||+++.+
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999999888899999999999999999999999999999999999999999999999999998654
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-44 Score=354.86 Aligned_cols=278 Identities=23% Similarity=0.401 Sum_probs=253.4
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
..++++.|++ ..+++++.|++|+|||+.+++. ...+.+|.+.|++++|+|+|++|++|+.||+|+|||+.+++.+.
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~ 186 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR 186 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Confidence 4688899987 4588888999999999999887 67788999999999999999999999999999999999999999
Q ss_pred EecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 220 TLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
.+.+ |...|.+++|+ +.+|++|+.|+.|++||++++.. +..+.+|...|.++.|+|++.+|++|+.|+.|++||+.
T Consensus 187 ~~~~-h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 187 TMHG-HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264 (410)
T ss_dssp CCCC-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 9887 99999999994 68999999999999999998764 67888999999999999999999999999999999998
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCC-------------------CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQ-------------------SNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-------------------~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~ 358 (458)
+... ...+..|...|.+++|+|++ ..++++|+ .|+.|++||++++.++..+..
T Consensus 265 ~~~~------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~ 336 (410)
T 1vyh_C 265 TKEC------KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVG 336 (410)
T ss_dssp TCCE------EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEEC
T ss_pred CCce------eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEEC
Confidence 8765 67888999999999999963 34777776 999999999999999988864
Q ss_pred -CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 359 -GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 359 -~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
...|.+++|+|++++|++ |..|+.|++||+.+++.+..+.+|...|++++|+|++.+|++|+.||+|++|++.
T Consensus 337 h~~~v~~v~~~~~g~~l~s--~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CSSCEEEEEECSSSSCEEE--EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCcEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 567999999999999998 5589999999999999999999999999999999999999999999999999863
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=335.22 Aligned_cols=280 Identities=19% Similarity=0.334 Sum_probs=252.8
Q ss_pred CccccceeeccCC------CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC
Q 012679 140 DDYYLNLLDWGSS------NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213 (458)
Q Consensus 140 ~d~~~~~~~~~~~------~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~ 213 (458)
.+-.+.+++|+++ .+++++.|++|+||++.+++......+.+|...|.+++|++++.++++|+.||.|++||+.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 3446888999752 5889999999999999888766677889999999999999999999999999999999999
Q ss_pred CceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcE
Q 012679 214 ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLL 291 (458)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i 291 (458)
+++.+..+.. |...+.+++| ++.+|++|+.||.|++||++.+.. ...+..|...|.+++|+|++++|++|+.||.|
T Consensus 111 ~~~~~~~~~~-~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i 188 (321)
T 3ow8_A 111 NGKQIKSIDA-GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188 (321)
T ss_dssp TTEEEEEEEC-CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCEEEEEeC-CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999887 8888999999 478999999999999999998775 56677889999999999999999999999999
Q ss_pred EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCC
Q 012679 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKN 370 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~ 370 (458)
++||++++.. +..+.+|...|.+++|+|++ .+|++++ .|+.|++||+++++++..+.. ...|.+++|+|+
T Consensus 189 ~iwd~~~~~~------~~~~~~h~~~v~~l~~spd~-~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 189 NIFDIATGKL------LHTLEGHAMPIRSLTFSPDS-QLLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259 (321)
T ss_dssp EEEETTTTEE------EEEECCCSSCCCEEEECTTS-CEEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EEEECCCCcE------EEEEcccCCceeEEEEcCCC-CEEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence 9999988765 78888999999999999975 4666766 899999999999999888864 567999999999
Q ss_pred CCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
+.+|++ |..|+.|+|||+.+++.+.++.+|...|.+++|+|+|.+|++++.||+|++||+
T Consensus 260 ~~~l~s--~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 260 DTHFVS--SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SSEEEE--EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCEEEE--EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999988 448999999999999999999999999999999999999999999999999996
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.4e-43 Score=334.35 Aligned_cols=274 Identities=21% Similarity=0.394 Sum_probs=245.5
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce----
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---- 216 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---- 216 (458)
.+.++.|++ ..+++++.|+.|++||+.+++. +..+..|...|.+++|+|+|++|++|+.||.|++||+.+.+
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc--ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce
Confidence 577889987 3588899999999999998876 66778899999999999999999999999999999998753
Q ss_pred eeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679 217 QLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd 295 (458)
....+.+ |...|.++.|. +..+++++.|+.|++||++++.. +..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 135 ~~~~~~~-h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 135 VSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp EEEEEEC-CSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEEecC-CCccEEEEEECCCCcEEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 4455665 99999999994 56799999999999999987764 678889999999999999999999999999999999
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcCCCC
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNER 372 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~~ 372 (458)
++.+.. ...+.+|...|.+++|+|++ .++++++ .|++|++||+++++.+..+.+. ..|.+++|+|+++
T Consensus 213 ~~~~~~------~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 213 VREGMC------RQTFTGHESDINAICFFPNG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp TTTCSE------EEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CCCCee------EEEEcCCcCCEEEEEEcCCC-CEEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 988765 77888999999999999975 4566665 8999999999999988877654 3699999999999
Q ss_pred eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
++++ |..|+.|++||+.+++.+..+.+|...|.+++|+|+|.+|++|+.||+|+|||
T Consensus 284 ~l~~--g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEE--ECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9998 55899999999999999999999999999999999999999999999999997
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-40 Score=316.51 Aligned_cols=279 Identities=19% Similarity=0.320 Sum_probs=243.7
Q ss_pred cccceeeccC---CCeEEEEcCCEEEEEECCCCCe---eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679 142 YYLNLLDWGS---SNVLAIALGSTVYLWDASDGTT---SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 142 ~~~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~ 215 (458)
..+++++|++ +.+++++.|++|++|++..... ..+..+.+|...|.+++|+|+|++|++|+.||+|+|||+.++
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~ 97 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 97 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 3577888876 3488899999999999864321 346678899999999999999999999999999999999999
Q ss_pred eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC------CCEEEEEEC
Q 012679 216 RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS------GQQLASGGN 287 (458)
Q Consensus 216 ~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd------~~~l~sg~~ 287 (458)
+.+..+.+ |...|.+++|+ +.+|++|+.|+.|++||++.. .+..+.+|...|.++.|+|. +..|++++.
T Consensus 98 ~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~ 174 (319)
T 3frx_A 98 ETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174 (319)
T ss_dssp EEEEEEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC------CCEEEEEET
T ss_pred CeeEEEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC
Confidence 99999987 99999999995 689999999999999999743 46788899999999999985 458999999
Q ss_pred CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEE
Q 012679 288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLW 367 (458)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~ 367 (458)
|+.|++||++.... ...+.+|...|.+++|+|++. ++++++ .|+.|++||+.+++++..+.....+.+++|
T Consensus 175 d~~i~~wd~~~~~~------~~~~~~h~~~v~~~~~sp~g~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 245 (319)
T 3frx_A 175 DKMVKAWNLNQFQI------EADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245 (319)
T ss_dssp TSCEEEEETTTTEE------EEEECCCCSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTTTEEEEEEECCSCEEEEEE
T ss_pred CCEEEEEECCcchh------heeecCCCCcEEEEEEcCCCC-EEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEE
Confidence 99999999987654 677889999999999999754 566665 899999999999999999998899999999
Q ss_pred cCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 368 NKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--------HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 368 s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--------h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
+|++..++++. ++.+++|++.....+..+.. |...+.+++|+|||++|++|+.||.|++||+.+.
T Consensus 246 sp~~~~la~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 246 SPNRYWLAAAT---ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CSSSSEEEEEE---TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cCCCCEEEEEc---CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99999988753 45699999998887776643 4567999999999999999999999999998653
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.9e-41 Score=323.16 Aligned_cols=274 Identities=21% Similarity=0.386 Sum_probs=242.5
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc-----
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----- 215 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----- 215 (458)
.+++++|++ ..+++++.|++|++||..+++. ...+..|...|.+++|+|+|.+|++|+.|+.+++|++...
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~ 143 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK--EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM 143 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc--ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc
Confidence 588899987 4589999999999999998876 5556678889999999999999999999999999998643
Q ss_pred -eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC--CCCEEEEEECCCc
Q 012679 216 -RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA--SGQQLASGGNDNL 290 (458)
Q Consensus 216 -~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp--d~~~l~sg~~dg~ 290 (458)
.....+.. |...|.+++|. +..|++|+.||+|++||++++.. +..+.+|...|.+++|+| ++++|++|+.||.
T Consensus 144 ~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~ 221 (354)
T 2pbi_B 144 AAKKKSVAM-HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221 (354)
T ss_dssp GGGCEEEEE-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred cccceeeec-cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence 23455555 99999999994 67999999999999999998764 678899999999999988 5789999999999
Q ss_pred EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEE
Q 012679 291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLW 367 (458)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~ 367 (458)
|++||++++.. +..+..|...|.+++|+|++ .++++++ .|++|++||+++++.+..+... ..+.+++|
T Consensus 222 v~~wd~~~~~~------~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 222 AMVWDMRSGQC------VQAFETHESDVNSVRYYPSG-DAFASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp EEEEETTTCCE------EEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EEEEECCCCcE------EEEecCCCCCeEEEEEeCCC-CEEEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 99999998765 77888999999999999975 5666666 8999999999999887776543 36889999
Q ss_pred cCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 368 NKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 368 s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
+|++.++++ |+.|+.|++||+.+++.+..+.+|...|++++|+|+|++|++|+.||+|++|+
T Consensus 293 s~~g~~l~~--g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFA--GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEE--EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCEEEE--EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999998 55899999999999999999999999999999999999999999999999996
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-41 Score=331.34 Aligned_cols=282 Identities=20% Similarity=0.383 Sum_probs=243.6
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--- 216 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--- 216 (458)
..+++++|++ ..+++++.|++|+|||+.+++. ...+..|...|.+++|+|+|++|++|+.|+.|++||+.+..
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~ 144 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK--THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD 144 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE--EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc
Confidence 4588899987 4699999999999999998876 67778899999999999999999999999999999987532
Q ss_pred ----eeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEE-----cccccceEeEEEcC-CCCEEE
Q 012679 217 ----QLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETY-----RGHNQEVCGLKWSA-SGQQLA 283 (458)
Q Consensus 217 ----~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~~h~~~v~~l~~sp-d~~~l~ 283 (458)
....+.+ |...|.++.|. +..|++|+.|++|++||++++.. +..+ .+|...|.++.|++ ++++|+
T Consensus 145 ~~~~~~~~~~g-h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 222 (380)
T 3iz6_a 145 GNMPVSRVLTG-HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFI 222 (380)
T ss_dssp CSSTTCCBCCC-CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred CCccceeeccC-CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence 2334454 99999999994 46799999999999999998775 3444 57999999999987 889999
Q ss_pred EEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC----
Q 012679 284 SGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---- 359 (458)
Q Consensus 284 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---- 359 (458)
+|+.|+.|++||++.... .+..+.+|...|.+++|+|++ .++++++ .|++|++||+++++++..+...
T Consensus 223 sgs~D~~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDG-QRFGTGS--DDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp EEETTSCEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTS-SEEEEEC--SSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred EEECCCeEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCC-CeEEEEc--CCCeEEEEECCCCcEEEEeccccccc
Confidence 999999999999985432 167788999999999999975 5667766 9999999999999998877542
Q ss_pred ----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE----eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 360 ----SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL----SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 360 ----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
..+.+++|+|+++++++ |+.||.|++||..+++.+..+ .+|.+.|++++|+|+|.+|++|+.||+|++|+
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFA--GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEE--ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ccccCceEEEEECCCCCEEEE--EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 23889999999999998 668999999999999888877 68999999999999999999999999999999
Q ss_pred cCCCCc
Q 012679 432 VFGAPQ 437 (458)
Q Consensus 432 ~~~~~~ 437 (458)
+....+
T Consensus 373 ~~~~~~ 378 (380)
T 3iz6_a 373 FSGHRK 378 (380)
T ss_dssp CCSSSS
T ss_pred cCCCcc
Confidence 976543
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.4e-40 Score=312.47 Aligned_cols=279 Identities=17% Similarity=0.309 Sum_probs=243.7
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.+.+++|++ ..+++++.||.|++||+.+++. +..+..|...|.+++|+|++++|++|+.||.|++||+.+++.+..
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 92 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE--VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCce--eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 578899988 3488889999999999998876 677888999999999999999999999999999999999999999
Q ss_pred ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCC
Q 012679 221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~ 297 (458)
+.. |...|.+++|+ +.+|++|+.||+|++||++.+......+.+|...|.+++|+| ++.+|++|+.|+.|++||++
T Consensus 93 ~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~ 171 (304)
T 2ynn_A 93 FEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (304)
T ss_dssp EEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred EeC-CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 987 99999999995 689999999999999999988777788999999999999999 67899999999999999998
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCC-CCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPF-QSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELL 375 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~ 375 (458)
..... ......|...+..++|+|. ...++++++ .|++|++||+++++++..+.. ...|.+++|+|++..|+
T Consensus 172 ~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 172 QSTPN-----FTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp CSSCS-----EEEECCCTTCEEEEEECCSTTCCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred CCCcc-----ceeccCCcCcEEEEEEEEcCCCCEEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 76542 2223456688999999884 345777776 999999999999999998875 56799999999999988
Q ss_pred EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEecCC
Q 012679 376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC--TVASAAADETLRFWNVFG 434 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~--~l~s~s~Dg~i~iW~~~~ 434 (458)
+ |..|+.|++||..+++.+..+..|...+.+++|+|++. ++++|+.| .+.+|++.+
T Consensus 245 s--~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 245 S--GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp E--EETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred E--EcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 8 55899999999999999999999999999999999875 57766655 577888764
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.1e-41 Score=323.11 Aligned_cols=281 Identities=18% Similarity=0.219 Sum_probs=227.0
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCC---------CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDG---------TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~---------~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~ 212 (458)
.++++.|++ +.+++++.|+++++||.... ..........+...|.+++|+|++ .|++|+.||.|+|||+
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEec
Confidence 578899988 56788888888888863210 000011112245679999999985 6889999999999999
Q ss_pred CCceeeEEec---CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEE
Q 012679 213 TANRQLRTLR---GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGG 286 (458)
Q Consensus 213 ~~~~~~~~~~---~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~ 286 (458)
.+++.+..+. .+|...|.+++| ++.+|++|+.||.|++||++++. .+..+.+|...|.+++|++++. +|++|+
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s 189 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVAASPHKDSVFLSCS 189 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEEecCCCCCceeeec
Confidence 9987654432 249999999999 47899999999999999999765 4788999999999999999874 789999
Q ss_pred CCCcEEEEeCCCCCCCCcceeeeee--cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeE
Q 012679 287 NDNLLHIWDRSMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVC 363 (458)
Q Consensus 287 ~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~ 363 (458)
.|++|++||+++++. ...+ ..|...+.+++|+|++..++++|+ .|+.|++||+++++++..+.. ...|.
T Consensus 190 ~D~~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~~~~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 190 EDNRILLWDTRCPKP------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTKSTSCVLSSAVHSQCVT 261 (344)
T ss_dssp TTSCEEEEETTSSSC------EEECC----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESCC--CCEEEECCSSCEE
T ss_pred cccccccccccccce------eeeeecceeeccceeeeecCCCCcceEEec--cCCcEEEEECCCCcEEEEEcCCCCCEE
Confidence 999999999998776 4443 345667999999999899999887 999999999999999988875 56799
Q ss_pred EEEEcCCCC-eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCC
Q 012679 364 ALLWNKNER-ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 364 ~~~~s~~~~-~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~~~~ 436 (458)
+++|+|++. +|++ |..|+.|+|||+.+++.+ .+.+|.+.|++++|+|++. +|++++.||+|++|++....
T Consensus 262 ~v~fsp~g~~~las--gs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 262 GLVFSPHSVPFLAS--LSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEEECSSSSCCEEE--EETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEEccCCCeEEEE--EeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999999985 4555 558999999999988755 5789999999999999986 57799999999999997543
No 12
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-40 Score=312.64 Aligned_cols=255 Identities=18% Similarity=0.301 Sum_probs=228.7
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV 253 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 253 (458)
..++.+|.+.|++++|+|++++|++|+.||.|+|||+.++..+..+.. |...|.+++| ++++|++|+.|+.|++||+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 556788999999999999999999999999999999999999999987 9999999999 5799999999999999999
Q ss_pred cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s 333 (458)
.++.. +..+.+|...|.+++|+|++++|++|+.|++|++||++.... ....+.+|...|.+++|+|.+..++++
T Consensus 85 ~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 85 NTGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----LEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp TTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----EEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred CCCcE-EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----hhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 98775 678889999999999999999999999999999999876532 256788999999999999977788888
Q ss_pred eCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEEcC--CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679 334 GGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLWNK--NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFM 409 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s~--~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l 409 (458)
++ .|+.|++||+.++.....+.. ...+..+.|+| ++.++++ |..|+.|++||+.+++.+.++.+|...|.++
T Consensus 159 gs--~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~ 234 (304)
T 2ynn_A 159 GC--LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (304)
T ss_dssp EE--TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE--EETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred Ee--CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE--EcCCCeEEEEeCCCCccceeeCCCCCCEEEE
Confidence 87 999999999998887766643 35688999987 5667777 5589999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 410 AQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 410 ~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
+|+|++.+|++|+.||+|++||+.+.+.....
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence 99999999999999999999999887665543
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=318.24 Aligned_cols=288 Identities=20% Similarity=0.346 Sum_probs=233.8
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEE-EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc--ee
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELV-TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN--RQ 217 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~-~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~--~~ 217 (458)
.+..++|++ ..+++++.|+.|+|||+.++...... ...+|...|++++|+|+|++||+|+.|+.|+|||+.++ +.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 467788987 45888899999999999887643333 34689999999999999999999999999999998876 35
Q ss_pred eEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 218 LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 218 ~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
+..+.+ |...|.+++|+ +++|++|+.|+.|++||++... ..+..+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus 98 ~~~~~~-h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~ 176 (345)
T 3fm0_A 98 VTTLEG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176 (345)
T ss_dssp EEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEE
T ss_pred EEEccC-CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEE
Confidence 667776 99999999994 7899999999999999998764 345678899999999999999999999999999999
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC---------------CeeEEEe-
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG---------------ACLNSVD- 357 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~---------------~~~~~~~- 357 (458)
||.+.... .....+.+|...|.+++|+|++. +|++++ .|++|++||.... +++..+.
T Consensus 177 w~~~~~~~----~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T 3fm0_A 177 YREEEDDW----VCCATLEGHESTVWSLAFDPSGQ-RLASCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249 (345)
T ss_dssp EEEETTEE----EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS
T ss_pred EEecCCCE----EEEEEecCCCCceEEEEECCCCC-EEEEEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecC
Confidence 99876532 22567889999999999999754 556665 8999999996432 2233333
Q ss_pred -CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--------e-eEEEeCCCCcEEEEEEcCCC-CEEEEEeCCCc
Q 012679 358 -TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--------K-MAELSGHTSRVLFMAQSPDG-CTVASAAADET 426 (458)
Q Consensus 358 -~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--------~-~~~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~ 426 (458)
+...|.+++|++++..+++++ .|+.|++|+..... . .....+|...|++++|+|++ .+|++|+.||+
T Consensus 250 ~h~~~v~~v~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 250 FHSRTIYDIAWCQLTGALATAC--GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp SCSSCEEEEEECTTTCCEEEEE--TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred CCCCcEEEEEEecCCCEEEEEe--CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 456799999999999999854 79999999986542 1 22335899999999999988 59999999999
Q ss_pred EEEEecCCCCcccc
Q 012679 427 LRFWNVFGAPQVIS 440 (458)
Q Consensus 427 i~iW~~~~~~~~~~ 440 (458)
|++|++...++..+
T Consensus 328 v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 328 VAFWKYQRPEGLHH 341 (345)
T ss_dssp EEEEEECC------
T ss_pred EEEEEecCCCCccc
Confidence 99999987765543
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-40 Score=316.71 Aligned_cols=282 Identities=18% Similarity=0.277 Sum_probs=225.3
Q ss_pred ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEe-cC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC------
Q 012679 143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTV-DD-ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA------ 214 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~-~~-h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~------ 214 (458)
.+.+++|+++.+++++.|+.|++||+.++.......+ .+ |...|.+++|+|++++||+|+.||.|+|||+..
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~ 95 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF 95 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc
Confidence 5778899988888899999999999988654444455 34 999999999999999999999999999999853
Q ss_pred -ceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC---eeEEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679 215 -NRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD---HIVETYRGHNQEVCGLKWSASGQQLASGGND 288 (458)
Q Consensus 215 -~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d 288 (458)
.+.+..+.+ |...|.+++|+ +.+|++|+.|+.|++||++... ..+..+.+|...|.+++|+|++++|++|+.|
T Consensus 96 ~~~~~~~~~~-h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 174 (330)
T 2hes_X 96 EMDLLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174 (330)
T ss_dssp CCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred cceeEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 345566766 99999999994 7899999999999999995332 3467788999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC-CcEEEEeCCCCCCeEEEEECCCC--------CeeEEEe--
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ-SNLLATGGGGGDRCIKFWNTHTG--------ACLNSVD-- 357 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~ll~s~~g~~d~~i~lwd~~~~--------~~~~~~~-- 357 (458)
++|++||...... .++..+.+|...|.+++|+|++ ..++++++ .|++|++||+.++ .+...+.
T Consensus 175 ~~i~iW~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
T 2hes_X 175 DTVRIWKDYDDDW----ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDV 248 (330)
T ss_dssp SCEEEEEEETTEE----EEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSC
T ss_pred CeEEEEECCCCCe----eEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeecccc
Confidence 9999999865421 2367888999999999999974 35677776 9999999998765 2334443
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--eeEE-EeCCCC-cEEEEEEcC--CCCEEEEEeCCCcEEEEe
Q 012679 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--KMAE-LSGHTS-RVLFMAQSP--DGCTVASAAADETLRFWN 431 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--~~~~-~~~h~~-~V~~l~~sp--dg~~l~s~s~Dg~i~iW~ 431 (458)
+...|.+++|++++ .+++ +..|+.|+||+..+++ .+.. +.+|.. .|.+++|+| ++++|++|+.||+|+||+
T Consensus 249 h~~~v~~v~~s~~~-~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 249 HKRQVYNVAWGFNG-LIAS--VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp CSSCEEEEEECTTS-CEEE--EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred cccceEEEEEcCCC-EEEE--EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 45689999999765 5666 4489999999998764 3333 367887 899999999 789999999999999999
Q ss_pred cCC
Q 012679 432 VFG 434 (458)
Q Consensus 432 ~~~ 434 (458)
+..
T Consensus 326 ~~~ 328 (330)
T 2hes_X 326 LEK 328 (330)
T ss_dssp C--
T ss_pred ecc
Confidence 864
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.6e-39 Score=304.47 Aligned_cols=277 Identities=22% Similarity=0.437 Sum_probs=239.7
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
..++++.|++ ..+++++.|+.|++|++.+++. ...+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+.
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 101 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 101 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc--chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence 3578899987 3478888999999999998887 56678899999999999999999999999999999999999999
Q ss_pred EecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 220 TLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
.+.. |...|.+++|+ +.+|++|+.||.|++||++++.. +..+..|...|.+++|+|++++|++|+.||.|++||++
T Consensus 102 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 179 (312)
T 4ery_A 102 TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179 (312)
T ss_dssp EEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 9987 99999999995 68999999999999999997764 67888999999999999999999999999999999998
Q ss_pred CCCCCCcceeeeee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC---eEEEEEc-CCCC
Q 012679 298 MASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ---VCALLWN-KNER 372 (458)
Q Consensus 298 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~---v~~~~~s-~~~~ 372 (458)
.... +..+ ..+...+..++|+|++..+++ ++ .|+.|++||+.+++++..+..+.. .....++ +++.
T Consensus 180 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 180 SGQC------LKTLIDDDNPPVSFVKFSPNGKYILA-AT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp TCCE------EEEECCSSCCCEEEEEECTTSSEEEE-EE--TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred CCce------eeEEeccCCCceEEEEECCCCCEEEE-Ec--CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence 7754 3433 456678999999998665554 44 899999999999999888865322 2223344 5667
Q ss_pred eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEecC
Q 012679 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA--ADETLRFWNVF 433 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s--~Dg~i~iW~~~ 433 (458)
++++ |..||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++ .|++|++|+..
T Consensus 251 ~l~s--g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 251 WIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEE--CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEE--ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 7776 66899999999999999999999999999999999999999997 69999999864
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.7e-40 Score=317.70 Aligned_cols=287 Identities=16% Similarity=0.261 Sum_probs=226.1
Q ss_pred ccccceeeccC-CC-eEEEEc------CCEEEEEECCCCCeee--EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Q 012679 141 DYYLNLLDWGS-SN-VLAIAL------GSTVYLWDASDGTTSE--LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLW 210 (458)
Q Consensus 141 d~~~~~~~~~~-~~-~la~~~------d~~v~iwd~~~~~~~~--~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iw 210 (458)
+..++++.|++ +. +++++. |+.|++|+..++.... .....+|...|++++|+|++. +++++.||+|+||
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lW 120 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELW 120 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEe
Confidence 44688999998 34 555554 6789999988765321 223346788999999999986 5567889999999
Q ss_pred eCCCceeeEEe---cCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEE
Q 012679 211 DSTANRQLRTL---RGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLAS 284 (458)
Q Consensus 211 d~~~~~~~~~~---~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s 284 (458)
|+.+++..... ..+|...|.+++|+ +.+|++|+.||.|++||++++. .+..+.+|...|.+++|++++. ++++
T Consensus 121 d~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s 199 (357)
T 4g56_B 121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIFLS 199 (357)
T ss_dssp --------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred eccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCceeee
Confidence 99887654322 12499999999994 7899999999999999998765 4778899999999999999875 7899
Q ss_pred EECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeE
Q 012679 285 GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVC 363 (458)
Q Consensus 285 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~ 363 (458)
++.||.|++||++++.... ...+..|...+.+++|+|++..++++++ .|+.|++||+++++++..+.. ...|.
T Consensus 200 ~~~dg~v~~wd~~~~~~~~----~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~ 273 (357)
T 4g56_B 200 CGEDGRILLWDTRKPKPAT----RIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNIT 273 (357)
T ss_dssp EETTSCEEECCTTSSSCBC----BCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEE
T ss_pred eccCCceEEEECCCCceee----eeeeccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEE
Confidence 9999999999998876521 2234467788999999999899999887 999999999999999888864 56799
Q ss_pred EEEEcCCCCe-EEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 364 ALLWNKNERE-LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 364 ~~~~s~~~~~-l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
+++|+|++.. |++ |..|+.|+|||+.+++.+..+ +|.+.|++++|+| ++.+|+|++.||+|++|++....+.
T Consensus 274 ~l~~sp~~~~~las--gs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 274 GLAYSYHSSPFLAS--ISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEEECSSSSCCEEE--EETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EEEEcCCCCCEEEE--EeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 9999999864 555 458999999999999887655 7999999999999 8999999999999999999765443
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.5e-39 Score=309.81 Aligned_cols=277 Identities=17% Similarity=0.255 Sum_probs=231.7
Q ss_pred ccceeec-----cC---CCeEEEEcCCEEEEEECCCCC-----eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q 012679 143 YLNLLDW-----GS---SNVLAIALGSTVYLWDASDGT-----TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQL 209 (458)
Q Consensus 143 ~~~~~~~-----~~---~~~la~~~d~~v~iwd~~~~~-----~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~i 209 (458)
.++++.| ++ ..+++++.|++|++||+.+++ ......+.+|...|++++|+|++.+|++|+.||+|+|
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~l 102 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 4667776 32 458889999999999987643 2345678899999999999999999999999999999
Q ss_pred EeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEE---cccccceEeEEEcCCC-----
Q 012679 210 WDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETY---RGHNQEVCGLKWSASG----- 279 (458)
Q Consensus 210 wd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~l~~spd~----- 279 (458)
||+.+++.+..+.+ |...|.+++|+ +.+|++|+.|+.|++||+.... .... .+|...|.+++|+|++
T Consensus 103 wd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (343)
T 2xzm_R 103 WDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPIMKSANK 179 (343)
T ss_dssp EETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCCCCSCSC
T ss_pred EECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeeccccccccc
Confidence 99999999999987 99999999994 6899999999999999997432 2222 3788999999999987
Q ss_pred -----CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCee
Q 012679 280 -----QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGACL 353 (458)
Q Consensus 280 -----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~ 353 (458)
.+|++++.|+.|++||.. .. ....+.+|...|.+++|+|++. +|++++ .|+.|++||+. .....
T Consensus 180 ~~~~~~~l~s~~~d~~i~iwd~~-~~------~~~~~~~h~~~v~~~~~s~~g~-~l~sgs--~dg~v~iwd~~~~~~~~ 249 (343)
T 2xzm_R 180 VQPFAPYFASVGWDGRLKVWNTN-FQ------IRYTFKAHESNVNHLSISPNGK-YIATGG--KDKKLLIWDILNLTYPQ 249 (343)
T ss_dssp CCSSCCEEEEEETTSEEEEEETT-TE------EEEEEECCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEESSCCSSCS
T ss_pred cCCCCCEEEEEcCCCEEEEEcCC-Cc------eeEEEcCccccceEEEECCCCC-EEEEEc--CCCeEEEEECCCCcccc
Confidence 799999999999999943 22 2567889999999999999755 556665 89999999994 45566
Q ss_pred EEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE--EEe-----------CCCCcEEEEEEcCCCCEEEE
Q 012679 354 NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA--ELS-----------GHTSRVLFMAQSPDGCTVAS 420 (458)
Q Consensus 354 ~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~--~~~-----------~h~~~V~~l~~spdg~~l~s 420 (458)
..+.....|.+++|+|++..+++ | .|+.|++|++.+.+... .+. +|...|.+++|+|+|++|++
T Consensus 250 ~~~~~~~~v~~v~~sp~~~~la~--~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 326 (343)
T 2xzm_R 250 REFDAGSTINQIAFNPKLQWVAV--G-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA 326 (343)
T ss_dssp EEEECSSCEEEEEECSSSCEEEE--E-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred eeecCCCcEEEEEECCCCCEEEE--E-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence 66667788999999999987765 3 47889999998766443 443 68889999999999999999
Q ss_pred EeCCCcEEEEecCCC
Q 012679 421 AAADETLRFWNVFGA 435 (458)
Q Consensus 421 ~s~Dg~i~iW~~~~~ 435 (458)
|+.||+|++|++.++
T Consensus 327 g~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 327 GFTDGVIRTFSFETS 341 (343)
T ss_dssp EETTSEEEEEEEEEE
T ss_pred ecCCceEEEEEEEcc
Confidence 999999999998643
No 18
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.2e-38 Score=301.50 Aligned_cols=282 Identities=22% Similarity=0.333 Sum_probs=245.0
Q ss_pred cccceeeccCC---CeEEEEcCCEEEEEECCCCCe---eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679 142 YYLNLLDWGSS---NVLAIALGSTVYLWDASDGTT---SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 142 ~~~~~~~~~~~---~~la~~~d~~v~iwd~~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~ 215 (458)
..+++++|+++ .+++++.|++|+|||+.+++. .....+.+|...|++++|+|+|++|++|+.||.|++|+....
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~ 118 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc
Confidence 46899999863 377889999999999886542 346678899999999999999999999999999999999999
Q ss_pred eeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC--CEEEEEECCCcE
Q 012679 216 RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG--QQLASGGNDNLL 291 (458)
Q Consensus 216 ~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~--~~l~sg~~dg~i 291 (458)
........ +...+..+.+ ++..|++|+.|+.+++||+...........+|...+..++|++++ .++++++.|+.|
T Consensus 119 ~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i 197 (340)
T 4aow_A 119 TTTRRFVG-HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197 (340)
T ss_dssp EEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred ceeeeecC-CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEE
Confidence 88887776 7778888888 468999999999999999987776666677899999999999864 578999999999
Q ss_pred EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCC
Q 012679 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE 371 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~ 371 (458)
++||++.... +..+.+|...|.+++|+|++. ++++++ .|+.|++||+++++++..+.....+..++|+|++
T Consensus 198 ~i~d~~~~~~------~~~~~~h~~~v~~~~~s~~~~-~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 268 (340)
T 4aow_A 198 KVWNLANCKL------KTNHIGHTGYLNTVTVSPDGS-LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR 268 (340)
T ss_dssp EEEETTTTEE------EEEECCCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred EEEECCCCce------eeEecCCCCcEEEEEECCCCC-EEEEEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCC
Confidence 9999988765 778889999999999999754 566665 8999999999999999999999999999999988
Q ss_pred CeEEEEecCCCCcEEEEeCCCceeeEEEe---------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 372 RELLSSHGFTQNQLTLWKYPSMVKMAELS---------GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd~~~~~~~~~~~---------~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
..++++ .|+.|++||+.+...+..+. +|...|++++|+|||++|++|+.||.|+|||+.++.
T Consensus 269 ~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 269 YWLCAA---TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEEE---ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ceeecc---CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 766543 58999999999887776653 688899999999999999999999999999998775
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-38 Score=311.83 Aligned_cols=278 Identities=22% Similarity=0.384 Sum_probs=233.3
Q ss_pred cccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCC------------------CCEEEEEEcCCCCEEEEEe
Q 012679 142 YYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDEN------------------GPVTSVNWAPDGRHIAIGL 202 (458)
Q Consensus 142 ~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~------------------~~V~~v~~s~~g~~la~g~ 202 (458)
..++++.|++ +.+++.+.++.+++|++.+++. +..+..|. ..|++++|+|+|++||+|+
T Consensus 65 ~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSL--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp SCCCEEEECTTSSEEEEECBSCEEEEETTTCCE--EEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEcCCcEEEEEecCCCE--EEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 4678999998 5677788899999999999886 44444332 2499999999999999999
Q ss_pred cCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CC
Q 012679 203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SG 279 (458)
Q Consensus 203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~ 279 (458)
.||.|+|||+.+++.+..+.+ |...|.+++| ++.+|++|+.|+.|++||++++.. ...+ .+...+.+++|+| ++
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTL-SIEDGVTTVAVSPGDG 219 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECSTTC
T ss_pred CCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEE-EcCCCcEEEEEECCCC
Confidence 999999999999999998887 9999999999 478999999999999999987764 3333 3567899999999 89
Q ss_pred CEEEEEECCCcEEEEeCCCCCCCCcceeeeee-------cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-
Q 012679 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRL-------EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA- 351 (458)
Q Consensus 280 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~- 351 (458)
++|++|+.|+.|++||++++.. +..+ .+|...|.+++|+|++. ++++++ .|+.|++||+++..
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~------~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s--~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFL------VERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWNLQNANN 290 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCE------EEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEEC-----
T ss_pred CEEEEEcCCCcEEEEECCCCcE------EEeecccccCCCCCCCCEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCCC
Confidence 9999999999999999987754 3333 57899999999999765 556665 89999999997643
Q ss_pred -----------eeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC------
Q 012679 352 -----------CLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP------ 413 (458)
Q Consensus 352 -----------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp------ 413 (458)
+...+ .+...|.+++|++++.+|++ |..|+.|++||..+++.+..+.+|...|.+++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p 368 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 368 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT
T ss_pred cccccCCCCCcceEEEecccCcEEEEEECCCCCEEEE--EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCC
Confidence 33344 34567999999999999998 55899999999999999999999999999999986
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 012679 414 DGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 414 dg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
++.+|++|+.||+|+||++...
T Consensus 369 ~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 369 EYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCEEEEECCCCcEEECccccc
Confidence 6889999999999999998643
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2e-38 Score=328.12 Aligned_cols=288 Identities=19% Similarity=0.283 Sum_probs=237.5
Q ss_pred cccceeeccCC---CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 142 YYLNLLDWGSS---NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 142 ~~~~~~~~~~~---~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
..+++++|+++ .+++++.|++|++||..+++. ...+.+|...|++++|+|+|++||+|+.||+|+|||+.+++.+
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~--~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE--eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence 36888999884 388899999999999887765 6778899999999999999999999999999999999999988
Q ss_pred EEecC------CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCee-------------------------------
Q 012679 219 RTLRG------GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHI------------------------------- 259 (458)
Q Consensus 219 ~~~~~------~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~------------------------------- 259 (458)
..+.. +|...|.+++|+ +.+|++|+.|++|++||++++...
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence 88842 499999999994 789999999999999999865421
Q ss_pred -----------EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc-----ee----------------
Q 012679 260 -----------VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT-----QW---------------- 307 (458)
Q Consensus 260 -----------~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~---------------- 307 (458)
...+.+|...|.+++|+|++++|++++.|+.|++||+.++...... ..
T Consensus 306 i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s 385 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 385 (611)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence 2345689999999999999999999999999999998765321000 00
Q ss_pred --------------------------------------------------------eeeecccccceeEEEecCCCCcEE
Q 012679 308 --------------------------------------------------------LHRLEEHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 308 --------------------------------------------------------~~~~~~h~~~v~~l~~~p~~~~ll 331 (458)
+..+ .|...+.+++|+|++. ++
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~-~l 463 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQ-FV 463 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSC-EE
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCC-EE
Confidence 0000 1345578899999754 66
Q ss_pred EEeCCCCCCeEEEEECCCCCe--eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ceeeEE--EeCCCCcE
Q 012679 332 ATGGGGGDRCIKFWNTHTGAC--LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MVKMAE--LSGHTSRV 406 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~~--~~~h~~~V 406 (458)
++++ .|+.|++||+.++.. +....+...|.+++|+|++++|++ +..|+.|++|++.+ ++.+.. +.+|...|
T Consensus 464 asgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las--~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V 539 (611)
T 1nr0_A 464 AVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVANNFELAHTNSWTFHTAKV 539 (611)
T ss_dssp EEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred EEeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE--EcCCCCEEEEEcCCCCceeeeeeeeecccce
Confidence 6665 899999999987653 344567788999999999999998 45899999999987 665544 34599999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 407 LFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 407 ~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
.+++|+|||++|++|+.|++|++|++..+..
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred eEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 9999999999999999999999999987653
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.1e-38 Score=326.68 Aligned_cols=278 Identities=20% Similarity=0.324 Sum_probs=235.3
Q ss_pred cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEE
Q 012679 144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRT 220 (458)
Q Consensus 144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~ 220 (458)
...++|++ ++.++.+.++.|++|++.+++. ...+.+|...|++++|+|+|++||+|+.||+|+|||+.+++ ....
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~--~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTD--TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT 98 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSC--CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCccc--CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEe
Confidence 45577887 4566667789999999988776 66788999999999999999999999999999999997543 3445
Q ss_pred ecCCCcccEEEEEeC--CCeEEEEeCC----CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEECCCcEEE
Q 012679 221 LRGGHRSRVGSLAWN--NHILTTGGMD----GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGGNDNLLHI 293 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~--~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~dg~i~i 293 (458)
+.. |...|.+++|+ +..|++++.+ +.|++||.. . ....+.+|...|.+++|+|++. .|++|+.|++|++
T Consensus 99 ~~~-~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~-~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~l 174 (611)
T 1nr0_A 99 IPV-FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--T-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174 (611)
T ss_dssp EEC-SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--C-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred ecc-cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--C-CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEE
Confidence 665 99999999994 6888888765 478888753 3 2456789999999999999987 6999999999999
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE--------eCCCCeEEE
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--------DTGSQVCAL 365 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~--------~~~~~v~~~ 365 (458)
||....+. ...+.+|...|.+++|+|++. ++++++ .|++|++||+.+++++..+ .+...|.++
T Consensus 175 wd~~~~~~------~~~l~~H~~~V~~v~fspdg~-~las~s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v 245 (611)
T 1nr0_A 175 FEGPPFKF------KSTFGEHTKFVHSVRYNPDGS-LFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 245 (611)
T ss_dssp EETTTBEE------EEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred EECCCCeE------eeeeccccCceEEEEECCCCC-EEEEEE--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEE
Confidence 99776543 678899999999999999754 666666 8999999999999998887 356789999
Q ss_pred EEcCCCCeEEEEecCCCCcEEEEeCCCceeeE-------------------------------------------EEeCC
Q 012679 366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMA-------------------------------------------ELSGH 402 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~-------------------------------------------~~~~h 402 (458)
+|+|+++.|+++ ..|++|++||+.+++.+. .+.+|
T Consensus 246 ~~spdg~~l~s~--s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh 323 (611)
T 1nr0_A 246 TWSPDGTKIASA--SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323 (611)
T ss_dssp EECTTSSEEEEE--ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EECCCCCEEEEE--eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC
Confidence 999999999984 489999999998776543 34579
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
...|++++|+|||++|++++.|++|++||+..+...
T Consensus 324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 999999999999999999999999999999876543
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-38 Score=313.41 Aligned_cols=251 Identities=21% Similarity=0.371 Sum_probs=227.3
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEcc
Q 012679 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVR 254 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~ 254 (458)
..+.+|.++|++++|+|++.+|++|+.||.|+|||+.+++....+.+ |...|.+++|+ +.+|++|+.||.|++||+.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45678999999999999999999999999999999999999999987 99999999994 6899999999999999998
Q ss_pred CCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 255 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
+.. .+..+.+|...|.+++|+|++++|++|+.|+.|++||++++.. +..+.+|...|.+++|+|++ .+++++
T Consensus 181 ~~~-~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~------~~~~~~h~~~v~~~~~~~~g-~~l~s~ 252 (410)
T 1vyh_C 181 GFE-CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------VKTFTGHREWVRMVRPNQDG-TLIASC 252 (410)
T ss_dssp SSC-EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------EEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred CCc-eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE------EEEEeCCCccEEEEEECCCC-CEEEEE
Confidence 765 4678889999999999999999999999999999999998766 78888999999999999975 566666
Q ss_pred CCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCC--------------------CCeEEEEecCCCCcEEEEeCCCc
Q 012679 335 GGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKN--------------------ERELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 335 ~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~--------------------~~~l~~~~g~~d~~i~iwd~~~~ 393 (458)
+ .|+.|++||+.++++...+. +...|.+++|+|+ +.++++ |..|+.|++||+.++
T Consensus 253 s--~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s--gs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 253 S--NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVSTG 328 (410)
T ss_dssp E--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTTT
T ss_pred c--CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE--EeCCCeEEEEECCCC
Confidence 5 89999999999999988875 4567999999997 456766 558999999999999
Q ss_pred eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
..+..+.+|...|++++|+|+|++|++|+.||+|++||+.++.....
T Consensus 329 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~ 375 (410)
T 1vyh_C 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375 (410)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE
T ss_pred ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 99999999999999999999999999999999999999987765544
No 23
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-38 Score=301.30 Aligned_cols=297 Identities=15% Similarity=0.217 Sum_probs=255.4
Q ss_pred CCCCCceeeeCCCCCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 012679 125 IPQSSERTLDAPDLVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL 202 (458)
Q Consensus 125 i~~~~~~~l~~~~~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~ 202 (458)
.++...+.+...+.. ..++++.|++ ..+++++.|+.|++||+.+++. +..+.+|...|++++|+|++++|++++
T Consensus 18 ~~G~~~~~~~l~~h~--~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 18 FQGSHMKAIKLTGHE--RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER--LGTLDGHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp SSCCSEEEEEEECCS--SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EeccccccEEEEEee--ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh--hhhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence 344455554444433 3588899987 3477778899999999999876 677889999999999999999999999
Q ss_pred cCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCC-----CcEEEEEccCCCe----------eEEEEcc
Q 012679 203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMD-----GLIINNDVRVRDH----------IVETYRG 265 (458)
Q Consensus 203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d-----g~i~vwd~~~~~~----------~~~~~~~ 265 (458)
.||.|++||+.+++.+..+. +...|.+++|+ +.+|++++.+ |.|.+||+..... ....+..
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp TTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred CCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 99999999999999998888 88899999994 7899999998 9999999986542 2344556
Q ss_pred ccc--ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679 266 HNQ--EVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK 343 (458)
Q Consensus 266 h~~--~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~ 343 (458)
|.. .+.+++|+|++++|++++.||.|++||++.... .+..+..|...|.+++|+|++..+ ++++ .|+.|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~--~d~~i~ 243 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-----YVDSIDLHEKSISDMQFSPDLTYF-ITSS--RDTNSF 243 (369)
T ss_dssp CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-----EEEEEECCSSCEEEEEECTTSSEE-EEEE--TTSEEE
T ss_pred CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-----eEEEEecCCCceeEEEECCCCCEE-EEec--CCceEE
Confidence 666 899999999999999999999999999987322 267788899999999999976555 5554 899999
Q ss_pred EEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC--------------cEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679 344 FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN--------------QLTLWKYPSMVKMAELSGHTSRVLFM 409 (458)
Q Consensus 344 lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~--------------~i~iwd~~~~~~~~~~~~h~~~V~~l 409 (458)
+||+.+++.+..+.....+..++|+|+++.++++. .++ .+++||..+++.+..+.+|...|+++
T Consensus 244 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~ 321 (369)
T 3zwl_B 244 LVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGG--GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV 321 (369)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEE--CCC-------------CEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEECCCCceeeeecCCCCceeEEecCCCceEEEee--cCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEE
Confidence 99999999999999999999999999999999964 455 89999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 410 AQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 410 ~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
+|+|++++|++++.||.|++|++..+..
T Consensus 322 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 322 AISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred EECCCCCEEEEEcCCCeEEEEECccccc
Confidence 9999999999999999999999976543
No 24
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-37 Score=326.25 Aligned_cols=278 Identities=22% Similarity=0.318 Sum_probs=239.2
Q ss_pred cccceeeccCC---CeEEEEcCCEEEEEECCCCCe---eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679 142 YYLNLLDWGSS---NVLAIALGSTVYLWDASDGTT---SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 142 ~~~~~~~~~~~---~~la~~~d~~v~iwd~~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~ 215 (458)
..+++++|+++ .+++++.|++|++||+.+... .....+.+|...|++++|+|+|++|++|+.||.|+|||+.++
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~ 462 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG 462 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 45888899763 378889999999999976432 235667899999999999999999999999999999999999
Q ss_pred eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEE---EcccccceEeEEEcCCC--CEEEEEECC
Q 012679 216 RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVET---YRGHNQEVCGLKWSASG--QQLASGGND 288 (458)
Q Consensus 216 ~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~~h~~~v~~l~~spd~--~~l~sg~~d 288 (458)
+.+..+.+ |...|.+++|+ +.+|++|+.|++|++||+..... ... ..+|...|.+++|+|++ ..|++|+.|
T Consensus 463 ~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 540 (694)
T 3dm0_A 463 VSTRRFVG-HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540 (694)
T ss_dssp EEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred cceeEEeC-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence 99999987 99999999994 68999999999999999865432 222 24788999999999986 689999999
Q ss_pred CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEc
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWN 368 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s 368 (458)
+.|++||++.... ...+.+|...|.+++|+|++ .++++++ .|+.|++||+.+++++..+.....+.+++|+
T Consensus 541 ~~v~vwd~~~~~~------~~~~~~h~~~v~~v~~spdg-~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s 611 (694)
T 3dm0_A 541 KTVKVWNLSNCKL------RSTLAGHTGYVSTVAVSPDG-SLCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611 (694)
T ss_dssp SCEEEEETTTCCE------EEEECCCSSCEEEEEECTTS-SEEEEEE--TTSBCEEEETTTTEEEECCBCSSCEEEEEEC
T ss_pred CeEEEEECCCCcE------EEEEcCCCCCEEEEEEeCCC-CEEEEEe--CCCeEEEEECCCCceEEEecCCCcEEEEEEc
Confidence 9999999988765 77888999999999999975 5666666 8999999999999999988888899999999
Q ss_pred CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-------------------CcEEEEEEcCCCCEEEEEeCCCcEEE
Q 012679 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-------------------SRVLFMAQSPDGCTVASAAADETLRF 429 (458)
Q Consensus 369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-------------------~~V~~l~~spdg~~l~s~s~Dg~i~i 429 (458)
|++..++++ .++.|+|||+.+++.+..+..+. ..+++++|+|+|++|++|+.||+|+|
T Consensus 612 p~~~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i 688 (694)
T 3dm0_A 612 PNRYWLCAA---TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688 (694)
T ss_dssp SSSSEEEEE---ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCcEEEEE---cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence 999888774 36779999999999888775432 13789999999999999999999999
Q ss_pred EecC
Q 012679 430 WNVF 433 (458)
Q Consensus 430 W~~~ 433 (458)
|++.
T Consensus 689 W~i~ 692 (694)
T 3dm0_A 689 WGIG 692 (694)
T ss_dssp EEC-
T ss_pred Eecc
Confidence 9985
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3e-38 Score=308.59 Aligned_cols=280 Identities=16% Similarity=0.202 Sum_probs=244.8
Q ss_pred cccceeeccCCCeEEEEcCCEEEEEECCCCC----eeeEEEecCCCCCEEEEEEcCC----C---CEEEEEecCCeEEEE
Q 012679 142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGT----TSELVTVDDENGPVTSVNWAPD----G---RHIAIGLNNCQVQLW 210 (458)
Q Consensus 142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~----~~~~~~~~~h~~~V~~v~~s~~----g---~~la~g~~dg~v~iw 210 (458)
..+++++|+++.+++++.||.|++||+.+++ ...+..+.+|...|++++|+|+ | ++|++|+.||.|++|
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw 96 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 96 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEE
Confidence 4688999999889999999999999999887 2236677789999999999999 9 999999999999999
Q ss_pred eCCCcee-----eEEecCCC-----cccEEEEEeC------CCe-EEEEeCCCcEEEEEccC------CCeeEE-----E
Q 012679 211 DSTANRQ-----LRTLRGGH-----RSRVGSLAWN------NHI-LTTGGMDGLIINNDVRV------RDHIVE-----T 262 (458)
Q Consensus 211 d~~~~~~-----~~~~~~~~-----~~~v~~l~~~------~~~-l~sg~~dg~i~vwd~~~------~~~~~~-----~ 262 (458)
|+.+++. +..+.. | ...|.+++|+ +.+ |++|+.||.|++||++. ... +. .
T Consensus 97 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~ 174 (397)
T 1sq9_A 97 RITREDETKKVIFEKLDL-LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPTLE 174 (397)
T ss_dssp EEEECTTTCCEEEEEECC-SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEEE
T ss_pred EccCCcccccccceeecc-cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCcce
Confidence 9998886 777776 7 5899999998 578 99999999999999987 443 22 4
Q ss_pred E-------cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc---c---ccceeEEEecCCCCc
Q 012679 263 Y-------RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE---H---TSAVKAIAWCPFQSN 329 (458)
Q Consensus 263 ~-------~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~---h---~~~v~~l~~~p~~~~ 329 (458)
+ ..|...|.+++|+|++ +|++|+.||.|++||++.... +..+.. | ...|.+++|+|++.
T Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~h~~~~~~i~~i~~~~~~~- 246 (397)
T 1sq9_A 175 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP------LYNFESQHSMINNSNSIRSVKFSPQGS- 246 (397)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE------EEEEECCC---CCCCCEEEEEECSSTT-
T ss_pred eeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce------eEEEeccccccccCCccceEEECCCCC-
Confidence 4 4588999999999999 999999999999999987654 677777 8 99999999999755
Q ss_pred EEEEeCCCCC---CeEEEEECCCCCeeEEEe--------------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 330 LLATGGGGGD---RCIKFWNTHTGACLNSVD--------------TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 330 ll~s~~g~~d---~~i~lwd~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
++++++ .| +.|++||+++++++..+. +...|.+++|+|++++|++ |..|+.|++||+.+
T Consensus 247 ~l~~~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 247 LLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKT 322 (397)
T ss_dssp EEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTT
T ss_pred EEEEEe--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE--EeCCCeEEEEEcCC
Confidence 455554 78 999999999999998886 4678999999999999988 44899999999999
Q ss_pred ceeeEEEe------CC---------------CCcEEEEEEcCCC----------CEEEEEeCCCcEEEEecCCC
Q 012679 393 MVKMAELS------GH---------------TSRVLFMAQSPDG----------CTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 393 ~~~~~~~~------~h---------------~~~V~~l~~spdg----------~~l~s~s~Dg~i~iW~~~~~ 435 (458)
++.+..+. +| ...|++++|+|+| ++|++++.||.|++|++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999 88 9999999999998 79999999999999999765
No 26
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=293.89 Aligned_cols=253 Identities=21% Similarity=0.318 Sum_probs=221.7
Q ss_pred EEEecCCCCCEEEEEEcCC----CCEEEEEecCCeEEEEeCCCcee--eEEecCCCcccEEEEEeC--CCeEEEEeCCCc
Q 012679 176 LVTVDDENGPVTSVNWAPD----GRHIAIGLNNCQVQLWDSTANRQ--LRTLRGGHRSRVGSLAWN--NHILTTGGMDGL 247 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~----g~~la~g~~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~ 247 (458)
...+.+|.+.|++++|+|+ +.+|++|+.||+|+|||+..++. ...+.+ |...|.+++|+ +.++++|+.|+.
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc-CCCCEEEEEECCCCCEEEEEeCCCc
Confidence 3456789999999999984 67999999999999999987654 335565 99999999995 689999999999
Q ss_pred EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679 248 IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 248 i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 327 (458)
|++||+.++.. +..+..|...+.+++|+|++++|++|+.||.|++||++.+.. ...+..|...|.+++|+|++
T Consensus 104 i~lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~------~~~~~~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 104 IRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK------EYSLDTRGKFILSIAYSPDG 176 (321)
T ss_dssp EEEEETTTTEE-EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE------EEEEECSSSCEEEEEECTTS
T ss_pred EEEEECCCCCE-EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce------eEEecCCCceEEEEEECCCC
Confidence 99999987764 677788899999999999999999999999999999988765 67778889999999999976
Q ss_pred CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcE
Q 012679 328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRV 406 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V 406 (458)
. ++++++ .|+.|++||+++++++..+.. ...|.+++|+|++++|++ |..|+.|++||+.+++.+..+.+|...|
T Consensus 177 ~-~lasg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~v 251 (321)
T 3ow8_A 177 K-YLASGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT--ASDDGYIKIYDVQHANLAGTLSGHASWV 251 (321)
T ss_dssp S-EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE--ECTTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred C-EEEEEc--CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE--EcCCCeEEEEECCCcceeEEEcCCCCce
Confidence 5 555555 899999999999999988864 567999999999999988 5589999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 407 LFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 407 ~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
.+++|+|++.+|++++.|++|++||+..+..+...
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 286 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence 99999999999999999999999999887765543
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-37 Score=288.71 Aligned_cols=277 Identities=18% Similarity=0.227 Sum_probs=236.8
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc---eee
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN---RQL 218 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~---~~~ 218 (458)
.++++.|.. +.+++++.||.|++||+.+++. ...+..|...|.+++|+|++++|++|+.||.|++|++... +.+
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWL--GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSSEE--EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCCEE--EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 567777733 5688888999999999988765 5566678999999999999999999999999999998654 556
Q ss_pred EEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCC
Q 012679 219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~ 297 (458)
..+.. |...|.+++|++.+|++++.||.|++|| .......+..|...+.++.|+| ++++|++++.||.|++||..
T Consensus 98 ~~~~~-~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 173 (313)
T 3odt_A 98 YTLIG-HQGNVCSLSFQDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND 173 (313)
T ss_dssp CEECC-CSSCEEEEEEETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred cchhh-cccCEEEEEecCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC
Confidence 66666 9999999999999999999999999999 3345677889999999999998 99999999999999999932
Q ss_pred CCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEE
Q 012679 298 MASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELL 375 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~ 375 (458)
. . ...+.. |...|.+++|+|++. +++++ .|+.|++||+++++++..+. +...+.+++|+|++ .++
T Consensus 174 ~--~------~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~ 240 (313)
T 3odt_A 174 K--V------IKTFSGIHNDVVRHLAVVDDGH--FISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV 240 (313)
T ss_dssp E--E------EEEECSSCSSCEEEEEEEETTE--EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE
T ss_pred c--e------EEEEeccCcccEEEEEEcCCCe--EEEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE
Confidence 2 1 555665 899999999999765 55555 89999999999999998887 56789999999999 466
Q ss_pred EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
+ +..|+.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++|++..+......
T Consensus 241 ~--~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 241 S--CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp E--EETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred E--EecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 5 45899999999999999999999999999999999998 667999999999999877655443
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-36 Score=287.51 Aligned_cols=278 Identities=19% Similarity=0.272 Sum_probs=236.4
Q ss_pred ccccceeeccC-CCeEEEEcCCEEEEEECCCCCee-eEEEe--cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679 141 DYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTS-ELVTV--DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 141 d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~-~~~~~--~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
...+.++.|++ +.+++++.||.|++||+.+++.. .+..+ .+|...|++++|+|++++|++|+.||.|++||+.+++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 34678899987 45666666999999999876531 22233 3789999999999999999999999999999999887
Q ss_pred --eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 217 --QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 217 --~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
....+.. |...|.+++|+ +.+|++++.||.|++||+++.. ....+..|...|.+++|+|++++|++++.||.|+
T Consensus 131 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 131 PRIKAELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp -EEEEEEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cceeeeccc-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccCceEEEEECCCCCEEEEEecCCcEE
Confidence 5556665 89999999994 6899999999999999998765 4678888999999999999999999999999999
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER 372 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~ 372 (458)
+||++.... +..+ .+...+.+++|+|++..++ +++ .|+.|++||+.+++......+...+.+++|+|+++
T Consensus 209 ~~d~~~~~~------~~~~-~~~~~v~~~~~s~~~~~l~-~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 209 SWDLREGRQ------LQQH-DFTSQIFSLGYCPTGEWLA-VGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp EEETTTTEE------EEEE-ECSSCEEEEEECTTSSEEE-EEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSS
T ss_pred EEECCCCce------Eeee-cCCCceEEEEECCCCCEEE-EEc--CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCC
Confidence 999988754 4443 4778899999999865554 444 79999999999998876667788899999999999
Q ss_pred eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
++++ +..+|.|++|++.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 279 ~l~~--~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 279 WFVS--TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEE--EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEE--ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9988 447999999999999888554 588899999999999999999999999999973
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=297.15 Aligned_cols=242 Identities=17% Similarity=0.250 Sum_probs=207.1
Q ss_pred cccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeE--EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 142 YYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSEL--VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 142 ~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~--~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
..++++.|++ +.+++++.||+|+|||+.+++.... ..+.+|.+.|++++|+|+|++|++|+.||+|+|||+.+++.+
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL 162 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3578899988 5688899999999999998875333 335589999999999999999999999999999999999999
Q ss_pred EEecCCCcccEEEEEeC--C-CeEEEEeCCCcEEEEEccCCCeeEEEE--cccccceEeEEEcC-CCCEEEEEECCCcEE
Q 012679 219 RTLRGGHRSRVGSLAWN--N-HILTTGGMDGLIINNDVRVRDHIVETY--RGHNQEVCGLKWSA-SGQQLASGGNDNLLH 292 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~ 292 (458)
..+.+ |...|.+++|+ + .+|++|+.||.|++||+++++.. ..+ ..|...+.+++|+| ++++|++|+.||.|+
T Consensus 163 ~~~~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 163 SSYRA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp EEECC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-EECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred EEEcC-cCCceEEEEecCCCCCceeeecccccccccccccccee-eeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 99987 99999999994 3 57899999999999999987753 333 35666799999999 567899999999999
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER 372 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~ 372 (458)
+||+++++. +..+.+|...|.+++|+|++..+|++++ .|++|++||+.+++++....+...|.+++|+|++.
T Consensus 241 ~wd~~~~~~------~~~~~~h~~~v~~v~fsp~g~~~lasgs--~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 241 LVDTKSTSC------VLSSAVHSQCVTGLVFSPHSVPFLASLS--EDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp EEESCC--C------CEEEECCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTCCEEEEECCCSSCEEEEEECSSST
T ss_pred EEECCCCcE------EEEEcCCCCCEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCC
Confidence 999998876 7888999999999999999888888887 99999999999999887767788999999999998
Q ss_pred eEEEEecCCCCcEEEEeCCCce
Q 012679 373 ELLSSHGFTQNQLTLWKYPSMV 394 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~~ 394 (458)
.++++ +..|++|++|++++..
T Consensus 313 ~llas-~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 313 SLLTT-VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TEEEE-EETTSCEEEEECCC--
T ss_pred eEEEE-EcCCCeEEEEECCCCC
Confidence 87765 3479999999998754
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=311.45 Aligned_cols=286 Identities=20% Similarity=0.379 Sum_probs=241.8
Q ss_pred ccceeeccCC-C-eEEE-----------EcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q 012679 143 YLNLLDWGSS-N-VLAI-----------ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQL 209 (458)
Q Consensus 143 ~~~~~~~~~~-~-~la~-----------~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~i 209 (458)
.+.+++|+++ . ++++ +.|+.|++||+.+++.........|...|++++|+|++++|++|+.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 4667888874 2 4544 4789999999998753222222357889999999999999999999999999
Q ss_pred EeCCC----ceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCC------eeE--EEEcccccceEeEE
Q 012679 210 WDSTA----NRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD------HIV--ETYRGHNQEVCGLK 274 (458)
Q Consensus 210 wd~~~----~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~------~~~--~~~~~h~~~v~~l~ 274 (458)
||+.+ .+.+..+.. |...|.+++|+ +.+|++|+.||.|++||+++.. ... .....|...|.+++
T Consensus 94 w~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp ECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred eecccccccccchhhccC-CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 99987 456777776 99999999995 6899999999999999998775 222 23467999999999
Q ss_pred EcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc------ccceeEEEecCCCCcEEEEeCCCCCC---eEEE
Q 012679 275 WSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH------TSAVKAIAWCPFQSNLLATGGGGGDR---CIKF 344 (458)
Q Consensus 275 ~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~p~~~~ll~s~~g~~d~---~i~l 344 (458)
|+|+ +.+|++++.||.|++||++.... +..+..| ...|.+++|+|++..++++++ .|+ .|++
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~~~~i~~ 244 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKE------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT--GSDNDPSILI 244 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEE------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE--CCSSSCCCCE
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCc------ceEEeccccccccCCceEEEEECCCCCCEEEEEE--CCCCCceEEE
Confidence 9999 78999999999999999988765 5555555 789999999999888888876 787 9999
Q ss_pred EECCCC-CeeEEEe--CCCCeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC-CEEE
Q 012679 345 WNTHTG-ACLNSVD--TGSQVCALLWNK-NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG-CTVA 419 (458)
Q Consensus 345 wd~~~~-~~~~~~~--~~~~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg-~~l~ 419 (458)
||++++ .++..+. +...|.+++|+| ++.++++ +..|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|+
T Consensus 245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS--SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA 322 (416)
T ss_dssp EETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE--EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred EeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE--EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence 999986 5666665 567899999999 8888888 4489999999999999999999999999999999999 8999
Q ss_pred EEeCCCcEEEEecCCCCccc
Q 012679 420 SAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 420 s~s~Dg~i~iW~~~~~~~~~ 439 (458)
+++.||.|++|++.......
T Consensus 323 s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 323 CASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp ECCSSSEEEEEESCCCCCSS
T ss_pred EEecCCcEEEEEccCCCCCc
Confidence 99999999999998776543
No 31
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.7e-38 Score=310.02 Aligned_cols=288 Identities=17% Similarity=0.214 Sum_probs=227.9
Q ss_pred ccccceeeccC---CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCce
Q 012679 141 DYYLNLLDWGS---SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 141 d~~~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
+..+++++|+| +.+++|+.||.|+|||+.+++......+.+|.+.|++|+|+| ++++|++|+.||+|+|||++++.
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 34689999987 247778889999999999888766777889999999999998 78999999999999999998765
Q ss_pred eeEEecC-CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEECCCcEE
Q 012679 217 QLRTLRG-GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGGNDNLLH 292 (458)
Q Consensus 217 ~~~~~~~-~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~dg~i~ 292 (458)
....... .+...+.+++| ++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++. +|++|+.|+.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 4333322 23445778888 5789999999999999999754 3567889999999999999876 788999999999
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-------CeEEE
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-------QVCAL 365 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-------~v~~~ 365 (458)
|||++....... +....+|...|.+++|+|++.. |++++ .|+.|++||+.++.+...+..+. .+...
T Consensus 277 iwd~~~~~~~~~---~~~~~~h~~~v~~~~~spdg~~-l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 277 IWDLRQVRGKAS---FLYSLPHRHPVNAACFSPDGAR-LLTTD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp EEETTTCCSSSC---CSBCCBCSSCEEECCBCTTSSE-EEEEE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred EEecccccccce---EEEeeeccccccceeECCCCCe-eEEEc--CCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 999988765321 3344679999999999997655 45555 89999999999998776663321 23456
Q ss_pred EEcCCCCeEEEEe----------cCCCCcEEEEeCCCceeeEEEe-CCCCcEEEE-EEcCCCCEEEEEeCCCcEEEEecC
Q 012679 366 LWNKNERELLSSH----------GFTQNQLTLWKYPSMVKMAELS-GHTSRVLFM-AQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 366 ~~s~~~~~l~~~~----------g~~d~~i~iwd~~~~~~~~~~~-~h~~~V~~l-~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
.|++++..++++. +..++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |++|+||++.
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 6777777766642 2345689999999999988875 678888887 6999999999875 8899999998
Q ss_pred CCCc
Q 012679 434 GAPQ 437 (458)
Q Consensus 434 ~~~~ 437 (458)
+++.
T Consensus 430 ~gk~ 433 (435)
T 4e54_B 430 EART 433 (435)
T ss_dssp ----
T ss_pred cCee
Confidence 7653
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.7e-37 Score=298.77 Aligned_cols=293 Identities=15% Similarity=0.209 Sum_probs=240.5
Q ss_pred cccceeeccCC-C-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 142 YYLNLLDWGSS-N-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 142 ~~~~~~~~~~~-~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
..+.++.|+++ + +++++.++.|++||+.+++...+..+.+|...|++++|+|++++|++|+.||.|++||+.+++...
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence 35788899873 3 555668999999999998755678888999999999999999999999999999999998887554
Q ss_pred Eec-CCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 220 TLR-GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 220 ~~~-~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
.+. ..|...|.+++|+ +.+|++|+.||.|++||++.... ......+|...|.+++|+|++++|++|+.||.|++
T Consensus 89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 168 (372)
T 1k8k_C 89 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168 (372)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEE
Confidence 432 2389999999994 78999999999999999987763 23344678999999999999999999999999999
Q ss_pred EeCCCCCCC------------CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-C
Q 012679 294 WDRSMASSN------------SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-S 360 (458)
Q Consensus 294 wd~~~~~~~------------~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~ 360 (458)
||++..... .....+..+..|...|.+++|+|++. ++++++ .|+.|++||+++++++..+..+ .
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~ 245 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS--HDSTVCLADADKKMAVATLASETL 245 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE--TTTEEEEEEGGGTTEEEEEECSSC
T ss_pred EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCceeEEEccCCC
Confidence 997532110 01233677778999999999999765 555555 8999999999999999888764 5
Q ss_pred CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC--cee--e------------------------------------EEE-
Q 012679 361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPS--MVK--M------------------------------------AEL- 399 (458)
Q Consensus 361 ~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~--~~~--~------------------------------------~~~- 399 (458)
.+.+++|+|++.++++ | .|+.|++|++.+ ++. + ..+
T Consensus 246 ~v~~~~~~~~~~~l~~--~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 246 PLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp CEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CeEEEEEecCCCEEEE--E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 8999999999987776 5 799999999987 421 0 223
Q ss_pred eCCCCcEEEEEEc-CCC---CEEEEEeCCCcEEEEecCCCCcccc
Q 012679 400 SGHTSRVLFMAQS-PDG---CTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 400 ~~h~~~V~~l~~s-pdg---~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
.+|...|++++|. ++| .+|+||+.||.|++|++...++..+
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 4899999999966 677 9999999999999999987665543
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-36 Score=291.09 Aligned_cols=252 Identities=17% Similarity=0.331 Sum_probs=223.7
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV 253 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 253 (458)
..++.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.. |...|.+++| ++.+|++|+.|+.|++||+
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 567889999999999999999999999999999999999999999887 9999999999 4789999999999999999
Q ss_pred cCCC---eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679 254 RVRD---HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330 (458)
Q Consensus 254 ~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 330 (458)
.+.. .....+.+|...|.++.|++++. +++++.|+.|++||+.++.. +..+.+|...|.+++|+|++ .+
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~------~~~~~~h~~~v~~~~~~~~~-~~ 198 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ------TTTFTGHTGDVMSLSLAPDT-RL 198 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE------EEEECCCSSCEEEEEECTTS-SE
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE------EEEEcCCCCceEEEEECCCC-CE
Confidence 8754 34567789999999999998775 89999999999999988765 77888999999999999965 56
Q ss_pred EEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEE
Q 012679 331 LATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVL 407 (458)
Q Consensus 331 l~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~ 407 (458)
+++++ .|+.|++||++++.++..+.. ...|.+++|+|+++.+++ |..|+.|++||+.+++.+..+.. +...|+
T Consensus 199 l~sg~--~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 274 (340)
T 1got_B 199 FVSGA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT--GSDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp EEEEE--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred EEEEe--CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE--EcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence 66666 899999999999999988864 567999999999999998 55899999999999988877753 335799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 408 FMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
+++|+|+|++|++|+.||.|++||+........
T Consensus 275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~ 307 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence 999999999999999999999999987765544
No 34
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.9e-37 Score=297.55 Aligned_cols=279 Identities=13% Similarity=0.195 Sum_probs=228.2
Q ss_pred cccceeeccCC---CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCcee
Q 012679 142 YYLNLLDWGSS---NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQ 217 (458)
Q Consensus 142 ~~~~~~~~~~~---~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~ 217 (458)
..++++.|+++ .+++++.|+.|+|||+.+++........+|...|.+++|+| ++++|++|+.||.|++||+.+ ..
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~ 152 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV 152 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence 45888999884 37888889999999999988766666567999999999999 789999999999999999986 44
Q ss_pred eEEecC--CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEECCCcEE
Q 012679 218 LRTLRG--GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGGNDNLLH 292 (458)
Q Consensus 218 ~~~~~~--~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~dg~i~ 292 (458)
+..+.. .|...|.+++| ++.+|++|+.||.|++||++ + ..+..+.+|...|.+++|+|+++ +|++|+.|+.|+
T Consensus 153 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 230 (383)
T 3ei3_B 153 IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK 230 (383)
T ss_dssp EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEE
Confidence 555543 24588999999 47899999999999999994 3 34678889999999999999999 999999999999
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecC-CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC------------
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP-FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG------------ 359 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~------------ 359 (458)
+||++...... ..+..+ +|...|.+++|+| ++. ++++++ .|+.|++||+++++....+..+
T Consensus 231 iwd~~~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 231 LWDLRNIKDKN--SYIAEM-PHEKPVNAAYFNPTDST-KLLTTD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp EEEGGGCCSTT--CEEEEE-ECSSCEEEEEECTTTSC-EEEEEE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred EEeCCCCCccc--ceEEEe-cCCCceEEEEEcCCCCC-EEEEEc--CCCcEEEEECCCCccccccccccccccccccceE
Confidence 99998744321 113444 6999999999999 655 455555 8999999999998876655421
Q ss_pred ------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 360 ------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 360 ------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
..+..++|+|++++ +|..|+.|+|||+.+++.+..+.+ |...+..++|+|+|++|++|+ ||.|+|||
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~----s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~ 379 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL----LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN 379 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT----CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred EeccCCCCceEEEecCCccc----ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence 23444666666666 266899999999999999999987 457788889999999999997 99999999
Q ss_pred cCC
Q 012679 432 VFG 434 (458)
Q Consensus 432 ~~~ 434 (458)
+.+
T Consensus 380 ~~~ 382 (383)
T 3ei3_B 380 RED 382 (383)
T ss_dssp CC-
T ss_pred cCC
Confidence 864
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-36 Score=311.31 Aligned_cols=268 Identities=28% Similarity=0.515 Sum_probs=234.1
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.+..+.|++ ..+++++.|+.|++||..... +..+.+|...|.+++|+|+|++|++|+.||.|++||. +++.+..
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~ 380 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH---LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 380 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence 466778876 457788899999999987654 5567889999999999999999999999999999995 5677788
Q ss_pred ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
+.. |...|.+++| ++.+|++++.|+.|++||.. + ..+..+.+|...|.+++|+||+++|++++.|+.|++||...
T Consensus 381 ~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~ 457 (577)
T 2ymu_A 381 LTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG 457 (577)
T ss_dssp EEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred ecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 876 9999999999 47899999999999999964 3 34678889999999999999999999999999999999643
Q ss_pred CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEE
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSS 377 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 377 (458)
.. +..+.+|...|.+++|+|++. ++++++ .|+.|++||. +++++..+.. ...|++++|+|++++|++
T Consensus 458 -~~------~~~~~~~~~~v~~~~~spd~~-~las~~--~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s- 525 (577)
T 2ymu_A 458 -QL------LQTLTGHSSSVRGVAFSPDGQ-TIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS- 525 (577)
T ss_dssp -CE------EEEEECCSSCEEEEEECTTSC-EEEEEE--TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEE-
T ss_pred -CE------EEEEcCCCCCEEEEEEcCCCC-EEEEEe--CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEE-
Confidence 22 677889999999999999765 555555 8999999995 6788877764 578999999999999998
Q ss_pred ecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 378 ~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
+..|+.|+|||+ +++.+..+.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus 526 -~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 526 -ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -EETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -EECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 448999999996 6788999999999999999999999999999999999997
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-37 Score=300.86 Aligned_cols=276 Identities=15% Similarity=0.290 Sum_probs=243.7
Q ss_pred ccccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 141 DYYLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 141 d~~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
...+.++.|+++ .+++++.++.|++|| .+++. +..+..|...|++++|+|++++|++++.||.|++||+.+++.+
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGAL--LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCE--EEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCe--eeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 346888999873 477888899999999 45554 6677889999999999999999999999999999999999999
Q ss_pred EEecCCCccc---------------EEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE
Q 012679 219 RTLRGGHRSR---------------VGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL 282 (458)
Q Consensus 219 ~~~~~~~~~~---------------v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l 282 (458)
..+.. +... +.+++|. +..+++++.+|.|++||++.... ...+..|...|.+++|+|++++|
T Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 185 QHFEL-KETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-TGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEECC-C---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC-SEEECCCSSCEEEEEEETTTTEE
T ss_pred EEeec-cccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce-eeeeccCCCceEEEEECCCCCEE
Confidence 88876 6555 8888884 67899999999999999997654 66778999999999999999999
Q ss_pred EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCC
Q 012679 283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQ 361 (458)
Q Consensus 283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~ 361 (458)
++++.|+.|++||++.... +..+..|...|.+++|+|++ ++++++ .|+.|++||+.+++++..+.. ...
T Consensus 263 ~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~i~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNS------QNCFYGHSQSIVSASWVGDD--KVISCS--MDGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp EEEETTSCEEEECSSSBSC------SEEECCCSSCEEEEEEETTT--EEEEEE--TTSEEEEEETTTTEEEEEEECTTCC
T ss_pred EEEcCCCEEEEEECCCCcc------ceEecCCCccEEEEEECCCC--EEEEEe--CCCcEEEEECCCCcEeEecccCCcc
Confidence 9999999999999988766 67778899999999999976 666666 899999999999999888875 678
Q ss_pred eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--------------------eeEEEeCCCC--cEEEEEEcCCCCEEE
Q 012679 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--------------------KMAELSGHTS--RVLFMAQSPDGCTVA 419 (458)
Q Consensus 362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--------------------~~~~~~~h~~--~V~~l~~spdg~~l~ 419 (458)
+.+++|+|+++.+++ +..+|.|++||+.+++ .+..+.+|.. .|++++|+|++++|+
T Consensus 333 i~~~~~s~~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 410 (425)
T 1r5m_A 333 IFAGRISQDGQKYAV--AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKIS 410 (425)
T ss_dssp EEEEEECTTSSEEEE--EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEE
T ss_pred EEEEEEcCCCCEEEE--EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEE
Confidence 999999999999998 4489999999999888 8899999976 999999999999999
Q ss_pred EEeCCCcEEEEecC
Q 012679 420 SAAADETLRFWNVF 433 (458)
Q Consensus 420 s~s~Dg~i~iW~~~ 433 (458)
+++.||.|++|++.
T Consensus 411 ~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 411 VAYSLQEGSVVAIP 424 (425)
T ss_dssp EEESSSCCEEEECC
T ss_pred EEecCceEEEEeec
Confidence 99999999999985
No 37
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.4e-37 Score=305.68 Aligned_cols=276 Identities=21% Similarity=0.435 Sum_probs=238.3
Q ss_pred ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
.+.++.++++.+++++.||.|++||+.+++. ...+.+|.+.|++++| ++++|++|+.||.|++||+.+++.+..+.
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCE--EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeE--EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 4778888888999999999999999999887 6778899999999999 78899999999999999999999999998
Q ss_pred CCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCee--EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679 223 GGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHI--VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 223 ~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
. |...|.+++|++..+++|+.||.|++||+++.... ...+.+|...|.+++| ++++|++|+.||.|++||++++.
T Consensus 211 ~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~ 287 (435)
T 1p22_A 211 H-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE 287 (435)
T ss_dssp C-CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC
T ss_pred C-CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc
Confidence 7 99999999999999999999999999999877643 2677899999999999 78999999999999999999876
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEec
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHG 379 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g 379 (458)
. +..+.+|...|.+++|++ .++++++ .|+.|++||+++++++..+.. ...|.++.| ++..+++ |
T Consensus 288 ~------~~~~~~~~~~v~~~~~~~---~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s--g 352 (435)
T 1p22_A 288 F------VRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--G 352 (435)
T ss_dssp E------EEEEECCSSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE--E
T ss_pred E------EEEEcCCCCcEEEEEeCC---CEEEEEe--CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE--E
Confidence 6 788889999999999953 5677766 899999999999999998874 567999988 6778877 5
Q ss_pred CCCCcEEEEeCCCce---------eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 380 FTQNQLTLWKYPSMV---------KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 380 ~~d~~i~iwd~~~~~---------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
..||.|++||+.++. .+..+.+|.+.|++++| ++.+|++|+.||+|++||+.+........
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 422 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP 422 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC
Confidence 589999999997766 78889999999999999 78899999999999999998877655443
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.1e-38 Score=302.41 Aligned_cols=279 Identities=17% Similarity=0.234 Sum_probs=207.2
Q ss_pred eeccCCC-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEeCCCceeeE
Q 012679 147 LDWGSSN-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN------NCQVQLWDSTANRQLR 219 (458)
Q Consensus 147 ~~~~~~~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~------dg~v~iwd~~~~~~~~ 219 (458)
++.+..+ ++....+.....|++.... ...|...|++|+|+|||++||+|+. ||.|++|+..++....
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRPVTA------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCccceEEecCCCccccccCCCCCC------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 4444433 4555556788999876433 2468999999999999999999997 7889999987765432
Q ss_pred Eec---CCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCee---EEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 220 TLR---GGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHI---VETYRGHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 220 ~~~---~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
.+. .+|...|.+++|. ...+++++.||.|++||+.+++.. .....+|...|.+++|+|++++|++|+.|+.|+
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred eEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 221 1388899999995 467788899999999999876532 234458999999999999999999999999999
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe---CCCCeEEEEEcC
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD---TGSQVCALLWNK 369 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~---~~~~v~~~~~s~ 369 (458)
+||++++.. +..+..|...|.+++|+|++..++++++ .|+.|++||+++++++..+. ....+.+++|+|
T Consensus 165 iwd~~~~~~------~~~~~~h~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 165 VWDLSQKAV------LKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP 236 (357)
T ss_dssp EEETTTTEE------EEEECCCSSCEEEEEECTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT
T ss_pred EEECCCCcE------EEEEcCCCCCEEEEEEccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhhh
Confidence 999988765 7888999999999999999888888877 89999999999998876654 345699999999
Q ss_pred CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCCcccc
Q 012679 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG-CTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
++..++++ |..|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+..++....
T Consensus 237 ~~~~~la~-g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 237 EKDDTFAC-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp TSTTEEEE-EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred cccceEEE-eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence 87655544 5589999999999999999999999999999999987 5799999999999999987765443
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.1e-37 Score=298.48 Aligned_cols=283 Identities=16% Similarity=0.280 Sum_probs=233.4
Q ss_pred cccceeeccC------CCeEEEEcCCEEEEEECCCCCeeeE-EEe--cCCCCCEEEEEEcCC----CCEEEEEecCCeEE
Q 012679 142 YYLNLLDWGS------SNVLAIALGSTVYLWDASDGTTSEL-VTV--DDENGPVTSVNWAPD----GRHIAIGLNNCQVQ 208 (458)
Q Consensus 142 ~~~~~~~~~~------~~~la~~~d~~v~iwd~~~~~~~~~-~~~--~~h~~~V~~v~~s~~----g~~la~g~~dg~v~ 208 (458)
..+.+++|++ ..+++++.++.|++||+.+++.... ... ..|...|++++|+|+ |.+|++|+.||.|+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 4678888985 2388888899999999997665222 222 236788999999998 67999999999999
Q ss_pred EEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEE---cccccceEeEEEcCCCCEE
Q 012679 209 LWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETY---RGHNQEVCGLKWSASGQQL 282 (458)
Q Consensus 209 iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~l~~spd~~~l 282 (458)
+||+.+++.+..+.. |...|.+++|+ +.+|++|+.||.|++||++++.. ...+ .+|...|.+++|+|++++|
T Consensus 99 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 99 IINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLGEKI 176 (366)
T ss_dssp EECTTTCCEEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred EEEchhceEeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCCCCEE
Confidence 999999999999987 99999999994 58999999999999999987764 5555 6899999999999999999
Q ss_pred EEEECCCcEEEEeCCCCCCCCcc----------------------eeeeeecccccceeEEEecCCCCcEEEEeCCCCCC
Q 012679 283 ASGGNDNLLHIWDRSMASSNSVT----------------------QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR 340 (458)
Q Consensus 283 ~sg~~dg~i~iwd~~~~~~~~~~----------------------~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~ 340 (458)
++++.||.|++||++........ ........|...|.+++|+ ..++++++ .|+
T Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~--~d~ 251 (366)
T 3k26_A 177 MSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKS--CEN 251 (366)
T ss_dssp EEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEEC--SSS
T ss_pred EEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEe--cCC
Confidence 99999999999999875431000 0012333489999999998 34777776 899
Q ss_pred eEEEEECCCCCe--------------eEEEe-CCCCeEEEEEcCC--CCeEEEEecCCCCcEEEEeCCCce----eeEEE
Q 012679 341 CIKFWNTHTGAC--------------LNSVD-TGSQVCALLWNKN--ERELLSSHGFTQNQLTLWKYPSMV----KMAEL 399 (458)
Q Consensus 341 ~i~lwd~~~~~~--------------~~~~~-~~~~v~~~~~s~~--~~~l~~~~g~~d~~i~iwd~~~~~----~~~~~ 399 (458)
.|++||+.++.. +..+. +...|.+++|+|+ +++|++ |..||.|++||+.+++ ....+
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~ 329 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--GNQVGKLYVWDLEVEDPHKAKCTTL 329 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--ECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--EecCCcEEEEECCCCCCccccceEE
Confidence 999999988754 44444 3567999999999 999988 5689999999999875 44477
Q ss_pred eCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 400 SGH--TSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 400 ~~h--~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
.+| ...|++++|+|++++|++++.||.|++||+.
T Consensus 330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 887 7899999999999999999999999999985
No 40
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-36 Score=285.51 Aligned_cols=249 Identities=18% Similarity=0.312 Sum_probs=209.4
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC--ceeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEE
Q 012679 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA--NRQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIIN 250 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~--~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~v 250 (458)
..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.. .+.+..+.+ |...|.+++|. +.+|++|+.||+|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 45678999999999999999999999999999999974 467778887 99999999994 689999999999999
Q ss_pred EEccCCC-eeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679 251 NDVRVRD-HIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 251 wd~~~~~-~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 327 (458)
||++++. ..+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||++...... ...+.+|...|.+++|+|++
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~----~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS----PIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC----CEEEECCSSCEEEEEECCCC
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee----eeeeecccCccceEeecCCc
Confidence 9998764 235667889999999999997 8999999999999999998753211 34567899999999999963
Q ss_pred ------------CcEEEEeCCCCCCeEEEEECCCCC----eeEEEe-CCCCeEEEEEcCCC---CeEEEEecCCCCcEEE
Q 012679 328 ------------SNLLATGGGGGDRCIKFWNTHTGA----CLNSVD-TGSQVCALLWNKNE---RELLSSHGFTQNQLTL 387 (458)
Q Consensus 328 ------------~~ll~s~~g~~d~~i~lwd~~~~~----~~~~~~-~~~~v~~~~~s~~~---~~l~~~~g~~d~~i~i 387 (458)
..+|++++ .|+.|++||++++. ....+. +...|.+++|+|++ .+|++ |..|+.|+|
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~~v~i 233 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCII 233 (297)
T ss_dssp ------------CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEE
T ss_pred ccccccCCCCCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCCcEEE
Confidence 35788877 99999999998876 445554 45679999999995 56666 558999999
Q ss_pred EeCCCce---eeEEE--eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 388 WKYPSMV---KMAEL--SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 388 wd~~~~~---~~~~~--~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
||+.+.. ....+ .+|...|.+++|+|+|++|++++.||+|+||+...
T Consensus 234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9987642 12233 46888999999999999999999999999999863
No 41
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.3e-37 Score=293.51 Aligned_cols=282 Identities=15% Similarity=0.235 Sum_probs=233.4
Q ss_pred ccccceeeccCC--CeEEEEc----CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC---CCEEEEEecCCeEEEEe
Q 012679 141 DYYLNLLDWGSS--NVLAIAL----GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD---GRHIAIGLNNCQVQLWD 211 (458)
Q Consensus 141 d~~~~~~~~~~~--~~la~~~----d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~---g~~la~g~~dg~v~iwd 211 (458)
...+.++.|+++ .+++++. |+.|++||+.+++....... +|...|++++|+|+ |++|++|+.||.|++||
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 346889999983 3555552 89999999999887544444 57899999999998 79999999999999999
Q ss_pred CCCce-eeEEecCCCcccEEEEEe--------CCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc----ceEeEE----
Q 012679 212 STANR-QLRTLRGGHRSRVGSLAW--------NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ----EVCGLK---- 274 (458)
Q Consensus 212 ~~~~~-~~~~~~~~~~~~v~~l~~--------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~----~v~~l~---- 274 (458)
+.+++ .+..+.. |...|.++.| ++.+|++|+.||.|++||++.....+..+..|.. .|.++.
T Consensus 97 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 97 LEAPEMPVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp TTSCSSCSEEECC-CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred CCCCCccEEEEEe-cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 99988 7888876 9999999965 3679999999999999999987755667765554 788888
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC---CCCcEEEEeCCCCCCeEEEEECCCCC
Q 012679 275 WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP---FQSNLLATGGGGGDRCIKFWNTHTGA 351 (458)
Q Consensus 275 ~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~ll~s~~g~~d~~i~lwd~~~~~ 351 (458)
|+|++++|++++.||.|++||++.... .....|...|.+++|+| ++.. +++++ .|+.|++||+++++
T Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 176 YNQEERVVCAGYDNGDIKLFDLRNMAL-------RWETNIKNGVCSLEFDRKDISMNK-LVATS--LEGKFHVFDMRTQH 245 (357)
T ss_dssp CC-CCCEEEEEETTSEEEEEETTTTEE-------EEEEECSSCEEEEEESCSSSSCCE-EEEEE--STTEEEEEEEEEEE
T ss_pred cCCCCCEEEEEccCCeEEEEECccCce-------eeecCCCCceEEEEcCCCCCCCCE-EEEEC--CCCeEEEEeCcCCC
Confidence 788999999999999999999987653 33456889999999999 5554 55554 89999999999877
Q ss_pred eeEEE------eCCCCeEEEEEcCCCC-eEEEEecCCCCcEEEEeCCCc-------------------eeeEEEeCCCCc
Q 012679 352 CLNSV------DTGSQVCALLWNKNER-ELLSSHGFTQNQLTLWKYPSM-------------------VKMAELSGHTSR 405 (458)
Q Consensus 352 ~~~~~------~~~~~v~~~~~s~~~~-~l~~~~g~~d~~i~iwd~~~~-------------------~~~~~~~~h~~~ 405 (458)
.+..+ .+...|.+++|+|++. ++++ |..||.|++||+... +.+..+.+|...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLT--AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEE--EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEE--EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence 65544 3567899999999999 5555 458999999998743 467788999999
Q ss_pred EEEEEEcCCCCEEE-EEeCCCcEEEEecCCCC
Q 012679 406 VLFMAQSPDGCTVA-SAAADETLRFWNVFGAP 436 (458)
Q Consensus 406 V~~l~~spdg~~l~-s~s~Dg~i~iW~~~~~~ 436 (458)
|++++|+|+|++|+ +++.||.|++|++....
T Consensus 324 v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 324 ISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 99999999999998 89999999999997654
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-35 Score=279.69 Aligned_cols=255 Identities=22% Similarity=0.410 Sum_probs=224.1
Q ss_pred eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEE
Q 012679 174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINN 251 (458)
Q Consensus 174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vw 251 (458)
.....+.+|...|++++|+|++++|++|+.||.|++||+.+++....+.. |...|.+++|+ +++|++|+.||.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34667889999999999999999999999999999999999999888887 99999999994 6899999999999999
Q ss_pred EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll 331 (458)
|++++.. +..+.+|...|.+++|+|++++|++|+.|+.|++||++++.. +..+..|...|.+++|+|++. ++
T Consensus 93 d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~-~l 164 (312)
T 4ery_A 93 DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC------LKTLPAHSDPVSAVHFNRDGS-LI 164 (312)
T ss_dssp ETTTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE------EEEECCCSSCEEEEEECTTSS-EE
T ss_pred ECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE------EEEecCCCCcEEEEEEcCCCC-EE
Confidence 9997764 678889999999999999999999999999999999988765 778889999999999999755 55
Q ss_pred EEeCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE--
Q 012679 332 ATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL-- 407 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~-- 407 (458)
++++ .|+.|++||+++++.+..+.. ...+..++|+|+++++++ +..|+.|++||+.+++.+..+.+|...+.
T Consensus 165 ~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 240 (312)
T 4ery_A 165 VSSS--YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240 (312)
T ss_dssp EEEE--TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE--EETTTEEEEEETTTTEEEEEECSSCCSSSCC
T ss_pred EEEe--CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE--EcCCCeEEEEECCCCcEEEEEEecCCceEEE
Confidence 5655 899999999999998887743 457999999999999998 44899999999999999999998876532
Q ss_pred -EEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 408 -FMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 408 -~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
.....+++.+|++|+.||.|++||+..+..+...
T Consensus 241 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 275 (312)
T 4ery_A 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275 (312)
T ss_dssp CEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence 2333468899999999999999999887765443
No 43
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=286.81 Aligned_cols=254 Identities=19% Similarity=0.308 Sum_probs=225.0
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV 253 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 253 (458)
...+.+|.+.|++++|+|++++||+|+.||+|+|||..+++....+.. |...|.+++| ++..|++|+.|+.+.+|++
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 567789999999999999999999999999999999999998888887 8899999999 4799999999999999998
Q ss_pred cCCC-----eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC-
Q 012679 254 RVRD-----HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ- 327 (458)
Q Consensus 254 ~~~~-----~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~- 327 (458)
.... .....+.+|...|.++.|+|++..|++|+.|++|++||++++.. +..+.+|...|.+++|+|..
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL------LQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------EEEEECCSSCEEEEEECCCSS
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE------EEEEcCCCCCeEEEEEEeCCC
Confidence 6432 23456778999999999999999999999999999999988766 78889999999999999863
Q ss_pred CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC--CC
Q 012679 328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH--TS 404 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h--~~ 404 (458)
..++++++ .|+.|++||+++++++..+.. ...|.+++|+|++..+++ |..|+.|++||+...+.+..+..+ ..
T Consensus 210 g~~l~sgs--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 210 GNTFVSGG--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS--GSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp CCEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred CCEEEEEe--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEE--EeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 46788876 999999999999999988864 568999999999999988 458999999999998887777644 35
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 405 RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 405 ~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
.+.+++|+|+|.+|++|+.|++|++||+..+..+..
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~ 321 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE
Confidence 789999999999999999999999999987765543
No 44
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=283.75 Aligned_cols=256 Identities=22% Similarity=0.389 Sum_probs=214.4
Q ss_pred eeeEEEecCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee--EEecCCCcccEEEEEeC--CCeEEEEeCCCc
Q 012679 173 TSELVTVDDENG-PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL--RTLRGGHRSRVGSLAWN--NHILTTGGMDGL 247 (458)
Q Consensus 173 ~~~~~~~~~h~~-~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~--~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~ 247 (458)
...+.++.+|.+ .|.+++|+|+|++||+|+.||.|+|||+.++... ..+..+|...|.+++|+ +.+|++|+.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 345677889987 9999999999999999999999999999887643 23334599999999994 789999999999
Q ss_pred EEEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679 248 IINNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 248 i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
|++||+.... ..+..+.+|...|.+++|+|++++|++|+.|+.|++||+..... ...+..+..|...|.+++|+|+
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE---YECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC---EEEEEEECCCCSCEEEEEECSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC---eEEEEEecCcCCCeEEEEECCC
Confidence 9999998764 34678889999999999999999999999999999999987643 2335677889999999999997
Q ss_pred CCcEEEEeCCCCCCeEEEEECCCCCe--eEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-----------
Q 012679 327 QSNLLATGGGGGDRCIKFWNTHTGAC--LNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS----------- 392 (458)
Q Consensus 327 ~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~----------- 392 (458)
+. ++++++ .|+.|++||..++.. ...+. +...|.+++|+|++++|++ |..|+.|+||+...
T Consensus 162 ~~-~l~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s--~s~D~~v~iW~~~~~~~~~~~~~~~ 236 (345)
T 3fm0_A 162 QE-LLASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS--CSDDRTVRIWRQYLPGNEQGVACSG 236 (345)
T ss_dssp SS-CEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEEEECTTCTTCCCCC-
T ss_pred CC-EEEEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE--EeCCCeEEEeccccCCCCccceeec
Confidence 65 555555 899999999988753 34443 4578999999999999998 55899999999622
Q ss_pred ----ceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 393 ----MVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 393 ----~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
...+..+.+ |...|.+++|+|++..|++++.|+.|++|++....
T Consensus 237 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp --CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred cCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 234555655 88999999999999999999999999999987653
No 45
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-37 Score=309.73 Aligned_cols=270 Identities=11% Similarity=0.107 Sum_probs=211.7
Q ss_pred eEEEEcCCEEEEEECCCCCeee--EEEecCCCCCEEEEEEcCC------CCEEEEEecCCeEEEEeCCCcee--------
Q 012679 154 VLAIALGSTVYLWDASDGTTSE--LVTVDDENGPVTSVNWAPD------GRHIAIGLNNCQVQLWDSTANRQ-------- 217 (458)
Q Consensus 154 ~la~~~d~~v~iwd~~~~~~~~--~~~~~~h~~~V~~v~~s~~------g~~la~g~~dg~v~iwd~~~~~~-------- 217 (458)
+++++.|++|+|||+.+++... ...+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 3445678899999998876422 2345677889999999996 57999999999999999987642
Q ss_pred ---eEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeE--EEcCCC-CEEEEEECCCc
Q 012679 218 ---LRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL--KWSASG-QQLASGGNDNL 290 (458)
Q Consensus 218 ---~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l--~~spd~-~~l~sg~~dg~ 290 (458)
...+.+ |...|.+++|+ +..|++|+.||+|++||++++......+.+|...|.++ .|+|++ .+||+|+.|++
T Consensus 256 ~~p~~~l~~-h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t 334 (524)
T 2j04_B 256 EKPSLTLSL-ADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY 334 (524)
T ss_dssp CSCSEEECC-TTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE
T ss_pred cCceEEEEc-CCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe
Confidence 235555 99999999995 57999999999999999997765566788999999999 578888 89999999999
Q ss_pred EEEEeCCCCCCCCcceeeeeeccccc--ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE-eCCCCeEEEEE
Q 012679 291 LHIWDRSMASSNSVTQWLHRLEEHTS--AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV-DTGSQVCALLW 367 (458)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~~~~ 367 (458)
|+|||+++... ...+.+|.. .|.+++|+|++.. +++++ .|++|++||++++.++..+ .+...|.+++|
T Consensus 335 vklWD~~~~~~------~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~ 405 (524)
T 2j04_B 335 FYIFNPKDIAT------TKTTVSRFRGSNLVPVVYCPQIYS-YIYSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGV 405 (524)
T ss_dssp EEEECGGGHHH------HCEEEEECSCCSCCCEEEETTTTE-EEEEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEEC
T ss_pred EEEEECCCCCc------ccccccccccCcccceEeCCCcCe-EEEeC--CCCcEEEEECcccccceeeecCCCceEEEEe
Confidence 99999987654 444555543 5889999998665 55555 7999999999999887665 45678999999
Q ss_pred cCCCCeEEEEecCCCCcEEEEeCCC--------------------------------------------ceeeEEEeCCC
Q 012679 368 NKNERELLSSHGFTQNQLTLWKYPS--------------------------------------------MVKMAELSGHT 403 (458)
Q Consensus 368 s~~~~~l~~~~g~~d~~i~iwd~~~--------------------------------------------~~~~~~~~~h~ 403 (458)
+|+++.|++ |+.|++|++||+.. +..+..+.+|.
T Consensus 406 Sp~g~~l~S--gs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~ 483 (524)
T 2j04_B 406 SRLHPMVLA--GSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHG 483 (524)
T ss_dssp CSSCCBCEE--EETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CC
T ss_pred CCCCCeEEE--EECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCC
Confidence 999999988 55899999887421 11233456788
Q ss_pred CcEEEEEEcCCC---CEEEEEeCCCcEEEEecCCC
Q 012679 404 SRVLFMAQSPDG---CTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 404 ~~V~~l~~spdg---~~l~s~s~Dg~i~iW~~~~~ 435 (458)
..|.+++|+|++ .+|++|+.||+|+||++...
T Consensus 484 ~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 484 INITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred ceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 999999999995 49999999999999998754
No 46
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.3e-37 Score=297.53 Aligned_cols=254 Identities=15% Similarity=0.324 Sum_probs=221.6
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV 253 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 253 (458)
...+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+.. |...|.+++| ++.+|++|+.|+.|++||+
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 667899999999999999999999999999999999999999999987 9999999999 4789999999999999998
Q ss_pred cCCC------eeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeee-----cccccceeEE
Q 012679 254 RVRD------HIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL-----EEHTSAVKAI 321 (458)
Q Consensus 254 ~~~~------~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~h~~~v~~l 321 (458)
.... .....+.+|...|.++.|+|+ +..|++|+.|++|++||+.++.. +..+ .+|...|.++
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~------~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR------ISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE------EEEECCCSSSSCCSCEEEE
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE------EEEeecccCCCCccCeEEE
Confidence 7532 124567799999999999996 55799999999999999998765 4433 5789999999
Q ss_pred EecCCCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679 322 AWCPFQSNLLATGGGGGDRCIKFWNTH-TGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL 399 (458)
Q Consensus 322 ~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~ 399 (458)
+|++....++++|+ .|+.|++||++ .+.++..+. +...|.+++|+|++..+++ |..|+.|++||+.+++.+..+
T Consensus 212 ~~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 212 SINSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT--GSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp EECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE--ECSSSCEEEEETTTTEEEEEE
T ss_pred EeecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE--EcCCCeEEEEECCCCcEEEEe
Confidence 99987778888887 99999999998 456676665 4578999999999999998 558999999999999998888
Q ss_pred eCCCC-------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 400 SGHTS-------RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 400 ~~h~~-------~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
..+.. .|++++|+|+|++|++|+.||.|++||+..++....
T Consensus 288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~ 335 (380)
T 3iz6_a 288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN 335 (380)
T ss_dssp CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEE
T ss_pred cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEE
Confidence 65532 489999999999999999999999999987765544
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.3e-35 Score=292.73 Aligned_cols=278 Identities=19% Similarity=0.296 Sum_probs=242.0
Q ss_pred cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679 144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG 223 (458)
Q Consensus 144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~ 223 (458)
+.++.++++.+++++.||.|++||+.+++. +..+.+|.+.|++++|+|++ +|++|+.||.|++||+.+++.+..+..
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~--~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcE--EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 567888888999999999999999999876 77788999999999999988 999999999999999999999999987
Q ss_pred CCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCee----------------------EEEEcccccceEeEEEcC
Q 012679 224 GHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHI----------------------VETYRGHNQEVCGLKWSA 277 (458)
Q Consensus 224 ~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~----------------------~~~~~~h~~~v~~l~~sp 277 (458)
|...|.+++|. +.+|++|+.||.|++||++..... ...+.+|...|.++ ++
T Consensus 202 -h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~ 278 (464)
T 3v7d_B 202 -HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG 278 (464)
T ss_dssp -CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE
T ss_pred -CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC
Confidence 99999999994 478999999999999999876532 45677899998887 57
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679 278 SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357 (458)
Q Consensus 278 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~ 357 (458)
++++|++|+.||.|++||+++... +..+.+|...|.+++|+|++. .+++++ .|+.|++||+.+++++..+.
T Consensus 279 ~~~~l~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~-~l~sg~--~dg~i~vwd~~~~~~~~~~~ 349 (464)
T 3v7d_B 279 HGNIVVSGSYDNTLIVWDVAQMKC------LYILSGHTDRIYSTIYDHERK-RCISAS--MDTTIRIWDLENGELMYTLQ 349 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEE------EEEECCCSSCEEEEEEETTTT-EEEEEE--TTSCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcE------EEEecCCCCCEEEEEEcCCCC-EEEEEe--CCCcEEEEECCCCcEEEEEe
Confidence 899999999999999999987765 788889999999999999755 455555 89999999999999999886
Q ss_pred C-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 358 T-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 358 ~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
. ...|.++.|+ +..+++ |..||.|++||+.++....... |...+..++|+|++++|++|+ ||.|++||+.+++
T Consensus 350 ~h~~~v~~~~~~--~~~l~s--~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 350 GHTALVGLLRLS--DKFLVS--AAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CCSSCEEEEEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred CCCCcEEEEEEc--CCEEEE--EeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 4 5679999997 467777 4589999999999988776664 667788899999999999998 9999999999988
Q ss_pred cccccC
Q 012679 437 QVISKS 442 (458)
Q Consensus 437 ~~~~~~ 442 (458)
.+.+..
T Consensus 424 ~~~~~~ 429 (464)
T 3v7d_B 424 LVHANI 429 (464)
T ss_dssp EEESCT
T ss_pred EEehhh
Confidence 776533
No 48
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8e-35 Score=298.63 Aligned_cols=271 Identities=28% Similarity=0.510 Sum_probs=233.1
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
..++.+.|++ ..+++++.|+.|++||... +. +..+.+|...|.+++|+|++++|++++.||.|++||.... .+.
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~--~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~ 338 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QL--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQ 338 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTS-CE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cE--EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeE
Confidence 3577888877 3578888999999999753 43 5677899999999999999999999999999999997654 455
Q ss_pred EecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 220 TLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
.+.. |...|.+++|+ +..|++|+.||.|++||.. + ..+..+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus 339 ~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 339 TLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEeC-CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 6665 99999999994 7899999999999999964 3 3467888999999999999999999999999999999954
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLS 376 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 376 (458)
+.. +..+.+|...|.+++|+|++. ++++++ .|+.|++||. +++.+..+. +...|.+++|+|++++|++
T Consensus 416 -~~~------~~~~~~~~~~v~~~~~s~d~~-~l~~~~--~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 416 -GQL------LQTLTGHSSSVWGVAFSPDDQ-TIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp -CCE------EEEEECCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred -CCE------EEEecCCCCCeEEEEECCCCC-EEEEEc--CCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 222 677889999999999999765 555555 8999999996 456666654 5678999999999999998
Q ss_pred EecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
+ ..|+.|++||. +++.+..+.+|...|++++|+|||++|++++.||.|++||..
T Consensus 485 ~--~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 485 A--SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp E--ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred E--eCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 4 48999999995 678889999999999999999999999999999999999964
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.6e-36 Score=293.21 Aligned_cols=275 Identities=14% Similarity=0.181 Sum_probs=225.7
Q ss_pred eeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679 146 LLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG 223 (458)
Q Consensus 146 ~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~ 223 (458)
.+.|++ ..+++++.|+.|++||+.+++. ...+..| ..+....|++++++|++|+.||.|++||+.+++....+..
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDG--SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEET--TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccce--eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 455554 7799999999999999987654 3334444 4455557899999999999999999999999988887776
Q ss_pred CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 224 GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 224 ~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
|...|.+++|+ +.+|++|+.||.|++||++++.. +..+.+|...|.+++|+|++++|++|+.||.|++||++++..
T Consensus 138 -h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 138 -HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp -SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred -ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 99999999994 68999999999999999987765 577889999999999999999999999999999999988765
Q ss_pred CCcceeeeeecc---c---------------------ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679 302 NSVTQWLHRLEE---H---------------------TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357 (458)
Q Consensus 302 ~~~~~~~~~~~~---h---------------------~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~ 357 (458)
+..+.. | ...+.+++|+|++. ++++++ .|+.|++||+++++.+..+.
T Consensus 216 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 216 ------IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGH--VSGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp ------EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEE--TTSCEEEEETTTCCEEEEEC
T ss_pred ------eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEc--CCCeEEEEECCCCceeEEcc
Confidence 444443 2 34455566677644 556655 89999999999999888775
Q ss_pred C--CCCeEEEEEcCCCC-eEEEEecCCCCcEEEEeCCCcee-eEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 358 T--GSQVCALLWNKNER-ELLSSHGFTQNQLTLWKYPSMVK-MAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 358 ~--~~~v~~~~~s~~~~-~l~~~~g~~d~~i~iwd~~~~~~-~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
. ...+.+++|+|++. ++++ |..||.|++||+.+++. +..+.+ |...|.++.+ +++.+|++++.||.|++|++
T Consensus 287 ~~~~~~v~~~~~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 SKFTCSCNSLTVDGNNANYIYA--GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp CTTSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred cccCCCceeEEEeCCCCCEEEE--EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence 4 46799999999999 7776 55899999999998754 777776 6677888755 57889999999999999999
Q ss_pred CCCCc
Q 012679 433 FGAPQ 437 (458)
Q Consensus 433 ~~~~~ 437 (458)
.....
T Consensus 364 ~~~~~ 368 (420)
T 3vl1_A 364 SDPES 368 (420)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 87543
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.8e-35 Score=281.68 Aligned_cols=283 Identities=17% Similarity=0.174 Sum_probs=235.1
Q ss_pred ccceeeccC-CCeEEE-EcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE-
Q 012679 143 YLNLLDWGS-SNVLAI-ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR- 219 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~-~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~- 219 (458)
.+..++|++ +.++++ ..++.+.+|..... .......+|...|++++|+|++++|++++ ||.|++||+.+++...
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRH--ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSE--EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCc--cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 356678877 444444 44555666644432 22444457999999999999999999998 9999999998775332
Q ss_pred --Eec-CCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 220 --TLR-GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 220 --~~~-~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
.+. ..|...|.+++|+ +.+|++++.||.|++||++.... ....+..|...|.+++|+|++++|++++.||.|++
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~ 167 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 222 1389999999995 68999999999999999987653 35667789999999999999999999999999999
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCe
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE 373 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~ 373 (458)
||+++... +..+..|...|.+++|+|++. .+++++ .|+.|++||+++++.+..+.....+.+++|+|+++.
T Consensus 168 ~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 168 WDLHNQTL------VRQFQGHTDGASCIDISNDGT-KLWTGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW 238 (337)
T ss_dssp EETTTTEE------EEEECCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSE
T ss_pred EeCCCCce------eeeeecccCceEEEEECCCCC-EEEEEe--cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCE
Confidence 99988755 777888999999999999765 455554 899999999999999999999999999999999999
Q ss_pred EEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 374 l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
+++ +..++.|++||+.+.+.. .+..|...|.+++|+|++++|++++.||.|++|++..+.....
T Consensus 239 l~~--~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 239 LAV--GMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EEE--EETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEE--EcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 998 458999999999988754 6778999999999999999999999999999999988776643
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-37 Score=296.36 Aligned_cols=282 Identities=15% Similarity=0.217 Sum_probs=215.5
Q ss_pred ccceeeccC-C-CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---e
Q 012679 143 YLNLLDWGS-S-NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---Q 217 (458)
Q Consensus 143 ~~~~~~~~~-~-~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~ 217 (458)
.+++++|++ + .+++++.|+.|++||+.++....+..+.+|...|++++|+|++++|++|+.||.|++||+.+++ .
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 578889987 3 3566668999999999988545577888999999999999999999999999999999999887 5
Q ss_pred eEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCe--eEEEEcc-cccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 218 LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDH--IVETYRG-HNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 218 ~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~-h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
...+.. |...|.+++|+ +.+|++|+.|+.|++||++.... ....+.+ |...|.+++|+|++++|++|+.|+.|+
T Consensus 93 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 93 TLVLLR-LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp EEECCC-CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred eeEecc-cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence 556665 99999999994 68999999999999999987753 3566777 999999999999999999999999999
Q ss_pred EEeCCCCCCCC------------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe----eEEE
Q 012679 293 IWDRSMASSNS------------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC----LNSV 356 (458)
Q Consensus 293 iwd~~~~~~~~------------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~----~~~~ 356 (458)
+||+....... ....+..+ .|...|.+++|+|++..+ ++++ .|+.|++||+.+++. +..+
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l-~~~~--~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNAL-AYAG--HDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCE-EEEE--TTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEE-EEEe--CCCcEEEEECCCCCCcceeeEee
Confidence 99986433111 12335556 899999999999986655 4444 899999999999987 5555
Q ss_pred eC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce---------------------------------------ee
Q 012679 357 DT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV---------------------------------------KM 396 (458)
Q Consensus 357 ~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~---------------------------------------~~ 396 (458)
.. ...|.+++|+|++++|++ |..+ .+.+|+..... ..
T Consensus 248 ~~~~~~v~~~~~s~~~~~l~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (377)
T 3dwl_C 248 KLSQLPLRSLLWANESAIVAA--GYNY-SPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF 324 (377)
T ss_dssp ECSSSCEEEEEEEETTEEEEE--ESSS-SEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred cCCCCceEEEEEcCCCCEEEE--EcCC-cEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence 44 567999999999998877 4344 45577764211 00
Q ss_pred EE-------------EeCCCCcEEEEEEcCCC-C---EEEEEeCCCcEEEEec
Q 012679 397 AE-------------LSGHTSRVLFMAQSPDG-C---TVASAAADETLRFWNV 432 (458)
Q Consensus 397 ~~-------------~~~h~~~V~~l~~spdg-~---~l~s~s~Dg~i~iW~~ 432 (458)
.. ...|...|+++++.+.. . .|+|||.||.|++||+
T Consensus 325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 01399999999976543 3 6999999999999986
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-36 Score=297.51 Aligned_cols=277 Identities=12% Similarity=0.216 Sum_probs=226.1
Q ss_pred cccceeeccC-C--CeEEEEcCCEEEEEECCC---CCee-eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC-
Q 012679 142 YYLNLLDWGS-S--NVLAIALGSTVYLWDASD---GTTS-ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST- 213 (458)
Q Consensus 142 ~~~~~~~~~~-~--~~la~~~d~~v~iwd~~~---~~~~-~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~- 213 (458)
..+++++|++ + .+++++.|+.|+|||+.+ +... ....+ +|...|++++|+|++++|++|+.||.|++||+.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 4688899988 3 488888999999999876 4321 13333 489999999999999999999999999999995
Q ss_pred --CceeeEEecC---------C--CcccEEEEEe----CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc--cccceEeEE
Q 012679 214 --ANRQLRTLRG---------G--HRSRVGSLAW----NNHILTTGGMDGLIINNDVRVRDHIVETYRG--HNQEVCGLK 274 (458)
Q Consensus 214 --~~~~~~~~~~---------~--~~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~l~ 274 (458)
+++.+..+.. . +...+.++.+ ++.+|++|+.||.|++||+++... +..+.+ |...|++++
T Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER-LQIIENSPRHGAVSSIC 221 (437)
T ss_dssp EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-EEEEECCGGGCCEEEEE
T ss_pred ccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-eEEEccCCCCCceEEEE
Confidence 4444433321 1 4556677764 378999999999999999998765 566766 899999999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-ccccceeEEEecCC---CCcEEEEeCCCCCCeEEEEECCCC
Q 012679 275 WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPF---QSNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 275 ~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~---~~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
|+|++++|++|+.||.|++||++.+.. +..+. .|...|.+++|+|. ...++++++ .|+.|++||++++
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~ 293 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDIRFNVL------IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS--SKTFLTIWNFVKG 293 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEE------EEEEBCTTCEEEEEEEECTTTCTTEEEEEEES--TTEEEEEEETTTT
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCccE------EEEEecCCCCceEEEEeccccCCCccEEEEEc--CCCcEEEEEcCCC
Confidence 999999999999999999999998654 56654 78889999988763 345777776 9999999999999
Q ss_pred CeeEEEeC---------------------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--
Q 012679 351 ACLNSVDT---------------------------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG-- 401 (458)
Q Consensus 351 ~~~~~~~~---------------------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-- 401 (458)
+++..+.. ...|.+++|+ ++++|++ |..|+.|++||+.+++.+..+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT--DEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE--EGGGTEEEEEETTCGGGCEEEECC-
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe--cCCCCeEEEEECCCcccceEEeccc
Confidence 98887762 2348889999 7777777 55899999999999888777765
Q ss_pred -----------------------------------CCCcEEEEEEcCC--CCEEEEEeCCCcEEEEe
Q 012679 402 -----------------------------------HTSRVLFMAQSPD--GCTVASAAADETLRFWN 431 (458)
Q Consensus 402 -----------------------------------h~~~V~~l~~spd--g~~l~s~s~Dg~i~iW~ 431 (458)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 371 RFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 88999999999999995
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=297.93 Aligned_cols=285 Identities=17% Similarity=0.297 Sum_probs=234.4
Q ss_pred ccccceeeccC--CCeEEEEcCCEEEEEECCCC--CeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCc
Q 012679 141 DYYLNLLDWGS--SNVLAIALGSTVYLWDASDG--TTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~--~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~ 215 (458)
...++++.|++ ..+++++.|+.|++||+.+. ....+..+.+|...|++++|+|+ +++|++|+.||.|++||+.++
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence 34578899987 45777888999999999872 11247778899999999999998 899999999999999999987
Q ss_pred e------eeEEe--cCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEccc------ccceEeEEEcCC
Q 012679 216 R------QLRTL--RGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGH------NQEVCGLKWSAS 278 (458)
Q Consensus 216 ~------~~~~~--~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h------~~~v~~l~~spd 278 (458)
+ ....+ ...|...|.+++|+ +.+|++++.||.|++||+++... +..+..| ...|.+++|+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (416)
T 2pm9_A 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-VIHLSYTSPNSGIKQQLSVVEWHPK 225 (416)
T ss_dssp SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-EEEECCCCCSSCCCCCEEEEEECSS
T ss_pred ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-ceEEeccccccccCCceEEEEECCC
Confidence 6 33332 12389999999995 57999999999999999987664 5556555 789999999999
Q ss_pred C-CEEEEEECCC---cEEEEeCCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679 279 G-QQLASGGNDN---LLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353 (458)
Q Consensus 279 ~-~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~ 353 (458)
+ .+|++++.|+ .|++||++..... +..+. +|...|.+++|+|....++++++ .|+.|++||+.+++++
T Consensus 226 ~~~~l~~~~~d~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~~l~s~~--~dg~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 226 NSTRVATATGSDNDPSILIWDLRNANTP-----LQTLNQGHQKGILSLDWCHQDEHLLLSSG--RDNTVLLWNPESAEQL 298 (416)
T ss_dssp CTTEEEEEECCSSSCCCCEEETTSTTSC-----SBCCCSCCSSCEEEEEECSSCSSCEEEEE--SSSEEEEECSSSCCEE
T ss_pred CCCEEEEEECCCCCceEEEEeCCCCCCC-----cEEeecCccCceeEEEeCCCCCCeEEEEe--CCCCEEEeeCCCCccc
Confidence 7 6899999999 9999999886321 55666 89999999999995456666665 8999999999999999
Q ss_pred EEEeC-CCCeEEEEEcCCC-CeEEEEecCCCCcEEEEeCCCceeeEEEe-------------------------------
Q 012679 354 NSVDT-GSQVCALLWNKNE-RELLSSHGFTQNQLTLWKYPSMVKMAELS------------------------------- 400 (458)
Q Consensus 354 ~~~~~-~~~v~~~~~s~~~-~~l~~~~g~~d~~i~iwd~~~~~~~~~~~------------------------------- 400 (458)
..+.. ...|.+++|+|++ ..+++ +..|+.|++|++.+........
T Consensus 299 ~~~~~~~~~v~~~~~s~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (416)
T 2pm9_A 299 SQFPARGNWCFKTKFAPEAPDLFAC--ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL 376 (416)
T ss_dssp EEEECSSSCCCCEEECTTCTTEEEE--CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred eeecCCCCceEEEEECCCCCCEEEE--EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence 88865 5679999999999 66666 5589999999998765432221
Q ss_pred ----CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 401 ----GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 401 ----~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.|...+.+++|+|+|++|++++.||+|+||++...
T Consensus 377 ~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 377 QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16677889999999999999999999999998754
No 54
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.7e-35 Score=276.33 Aligned_cols=250 Identities=20% Similarity=0.272 Sum_probs=216.2
Q ss_pred eeEEEecCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEeCCC-----ceeeEEecCCCcccEEEEEe--CCCeEEEEeCC
Q 012679 174 SELVTVDDENGPVTSVNWAPDG-RHIAIGLNNCQVQLWDSTA-----NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD 245 (458)
Q Consensus 174 ~~~~~~~~h~~~V~~v~~s~~g-~~la~g~~dg~v~iwd~~~-----~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d 245 (458)
....++.+|.+.|++++|+|++ ++|++|+.||+|++||+.. +..+..+.+ |...|.+++| ++.+|++|+.|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEECCCCCEEEEEeCC
Confidence 3456788999999999999965 8999999999999999864 345667776 9999999999 47899999999
Q ss_pred CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679 246 GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325 (458)
Q Consensus 246 g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 325 (458)
++|++||++++.. +..+.+|...|.+++|+|++.+|++|+.|++|++||++.. . +..+.+|...|.+++|+|
T Consensus 87 ~~v~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~------~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 87 KTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-C------LATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp SEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-E------EEEECCCSSCEEEEEECC
T ss_pred CEEEEEECCCCCe-eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-e------EEEEeccCCcEEEEEEcc
Confidence 9999999997764 6788999999999999999999999999999999998643 2 677889999999999999
Q ss_pred CC-----CcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679 326 FQ-----SNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL 399 (458)
Q Consensus 326 ~~-----~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~ 399 (458)
.. ..++++++ .|+.|++||+++++....+. +...|.+++|+|++++|++ |..|+.|+|||+.+++.+..+
T Consensus 159 ~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s--~~~dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 159 NEKADDDSVTIISAG--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS--AGKDGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp C------CCEEEEEE--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE--EETTCEEEEEETTTTEEEEEE
T ss_pred CCCCCCCccEEEEEe--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCcEEEEe
Confidence 63 34677776 99999999999998887775 4678999999999999998 558999999999999999998
Q ss_pred eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 400 SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 400 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
..+ ..|.+++|+|++.+|++++.+ .+++|++......
T Consensus 235 ~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~ 271 (319)
T 3frx_A 235 SAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLV 271 (319)
T ss_dssp ECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEE
T ss_pred cCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeee
Confidence 754 679999999999999988765 5999999765433
No 55
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.5e-36 Score=285.58 Aligned_cols=249 Identities=18% Similarity=0.298 Sum_probs=203.1
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEE
Q 012679 178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINN 251 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vw 251 (458)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+ |...|.+++|. +.+|++|+.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 346899999999999999999999999999999998775 4566776 99999999994 6899999999999999
Q ss_pred EccCCC-eeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC-
Q 012679 252 DVRVRD-HIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ- 327 (458)
Q Consensus 252 d~~~~~-~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~- 327 (458)
|++++. .....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.... ......+..|...|.+++|+|+.
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeeccccCCcceEEEccccC
Confidence 998764 345677899999999999998 88999999999999999886532 11134567899999999999973
Q ss_pred ---------------CcEEEEeCCCCCCeEEEEECCCC---CeeEEEe-CCCCeEEEEEcCCC----CeEEEEecCCCCc
Q 012679 328 ---------------SNLLATGGGGGDRCIKFWNTHTG---ACLNSVD-TGSQVCALLWNKNE----RELLSSHGFTQNQ 384 (458)
Q Consensus 328 ---------------~~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~-~~~~v~~~~~s~~~----~~l~~~~g~~d~~ 384 (458)
..+|++++ .|+.|++||++.+ +++..+. +...|.+++|+|++ ..|++ |..|+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~~ 239 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGR 239 (316)
T ss_dssp C------CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTCE
T ss_pred CccccccccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCCe
Confidence 24677766 9999999999765 3444454 45679999999987 66776 558999
Q ss_pred EEEEeCCCc---e-eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 385 LTLWKYPSM---V-KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 385 i~iwd~~~~---~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
|+||++.+. . ....+.+|...|.+++|+|+|++|++++.||+|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999998762 1 2334567899999999999999999999999999999863
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-34 Score=288.50 Aligned_cols=272 Identities=20% Similarity=0.372 Sum_probs=242.6
Q ss_pred cccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
..+.++.|+++.+++++.||.|++||+.+++. +..+.+|...|.+++|+ +++|++|+.||.|++||+.+++.+..+
T Consensus 160 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CCEEEEEecCCEEEEEeCCCeEEEEECCcCcE--EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 35778888888899999999999999999876 67788999999999995 678999999999999999999999998
Q ss_pred cCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 222 RGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 222 ~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
.. |...|.+++|++.++++|+.||.|++||++++. .+..+.+|...|.++.| ++.++++|+.||.|++||++++..
T Consensus 236 ~~-~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 236 MG-HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC 311 (445)
T ss_dssp EC-CSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE
T ss_pred cC-CcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE
Confidence 87 999999999999999999999999999998765 46788899999999999 889999999999999999998766
Q ss_pred CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe----CCCCeEEEEEcCCCCeEEEE
Q 012679 302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNKNERELLSS 377 (458)
Q Consensus 302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~ 377 (458)
+..+.+|...+.++.+++ .++++++ .||.|++||+++++++..+. +...|.++.|+ ++++++
T Consensus 312 ------~~~~~~~~~~v~~~~~~~---~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s- 377 (445)
T 2ovr_B 312 ------IHTLTGHQSLTSGMELKD---NILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT- 377 (445)
T ss_dssp ------EEEECCCCSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE-
T ss_pred ------EEEEcCCcccEEEEEEeC---CEEEEEe--CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE-
Confidence 778889999999998864 4666666 89999999999999999886 45679999996 567777
Q ss_pred ecCCCCcEEEEeCCCceeeEEE-----eCCCCcEEEEEEcCCCCEEEEEeCCCc----EEEEecCCCC
Q 012679 378 HGFTQNQLTLWKYPSMVKMAEL-----SGHTSRVLFMAQSPDGCTVASAAADET----LRFWNVFGAP 436 (458)
Q Consensus 378 ~g~~d~~i~iwd~~~~~~~~~~-----~~h~~~V~~l~~spdg~~l~s~s~Dg~----i~iW~~~~~~ 436 (458)
|..||.|++||+.+++.+..+ .+|.+.|++++|+|++.+|++|+.||+ |.+||+....
T Consensus 378 -~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 378 -SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp -EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred -EeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 558999999999999999888 478899999999999999999999998 9999997653
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-35 Score=287.20 Aligned_cols=278 Identities=16% Similarity=0.299 Sum_probs=233.3
Q ss_pred ccceeeccCC---CeEEEEcCCEEEEEEC----CCCCe----eeEEEecC----------CCCCEEEEEEcCCCCEEEEE
Q 012679 143 YLNLLDWGSS---NVLAIALGSTVYLWDA----SDGTT----SELVTVDD----------ENGPVTSVNWAPDGRHIAIG 201 (458)
Q Consensus 143 ~~~~~~~~~~---~~la~~~d~~v~iwd~----~~~~~----~~~~~~~~----------h~~~V~~v~~s~~g~~la~g 201 (458)
.+.+++|+++ .+++++.|+.|++||+ .+++. .....+.. |.+.|++++|+|++++|++|
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 4778899873 5777788999999999 87772 01233333 67799999999999999999
Q ss_pred ecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc----------
Q 012679 202 LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE---------- 269 (458)
Q Consensus 202 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~---------- 269 (458)
+.||.|++|| .+++.+..+.. |...|.+++|+ +.+|++++.||.|++||+.++.. +..+..+...
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNF-HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-MQHFELKETGGSSINAENHS 203 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECC-CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-EEEECCC-------------
T ss_pred eCCCeEEEEe-CCCCeeeeccC-CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCccceeecccc
Confidence 9999999999 67778888876 99999999994 68999999999999999987664 5667666666
Q ss_pred -----eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679 270 -----VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF 344 (458)
Q Consensus 270 -----v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l 344 (458)
+.++.|++++ .+++++.||.|++||+..... +..+..|...|.+++|+|++. ++++++ .|+.|++
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~i 273 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP------TGKLIGHHGPISVLEFNDTNK-LLLSAS--DDGTLRI 273 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC------SEEECCCSSCEEEEEEETTTT-EEEEEE--TTSCEEE
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce------eeeeccCCCceEEEEECCCCC-EEEEEc--CCCEEEE
Confidence 9999999875 588999999999999998765 677788999999999999765 555555 8999999
Q ss_pred EECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679 345 WNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA 423 (458)
Q Consensus 345 wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 423 (458)
||+.+++.+..+. +...+.+++|+|++ .+++ +..++.|++||+.+++.+..+..|...|.+++|+|++++|++++.
T Consensus 274 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 350 (425)
T 1r5m_A 274 WHGGNGNSQNCFYGHSQSIVSASWVGDD-KVIS--CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM 350 (425)
T ss_dssp ECSSSBSCSEEECCCSSCEEEEEEETTT-EEEE--EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred EECCCCccceEecCCCccEEEEEECCCC-EEEE--EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC
Confidence 9999999888886 56789999999999 6666 448999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCC
Q 012679 424 DETLRFWNVFGAP 436 (458)
Q Consensus 424 Dg~i~iW~~~~~~ 436 (458)
||.|++|++....
T Consensus 351 dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 351 DGQVNVYDLKKLN 363 (425)
T ss_dssp TSCEEEEECHHHH
T ss_pred CCeEEEEECCCCc
Confidence 9999999998665
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-35 Score=290.88 Aligned_cols=268 Identities=13% Similarity=0.203 Sum_probs=223.8
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 231 (458)
+.+++++.|+.|++||+.+++. ...+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.. |...|.+
T Consensus 110 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~ 186 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNFNLQ--REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTD 186 (420)
T ss_dssp CEEEEEETTSCEEEECTTSCEE--EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEE
T ss_pred CEEEEEECCCCEEEEeCCCcce--eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEE
Confidence 5688888999999999998765 566678999999999999999999999999999999999999999987 9999999
Q ss_pred EEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc---cc---------------------cceEeEEEcCCCCEEEEE
Q 012679 232 LAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG---HN---------------------QEVCGLKWSASGQQLASG 285 (458)
Q Consensus 232 l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~---h~---------------------~~v~~l~~spd~~~l~sg 285 (458)
++| ++.+|++|+.||.|++||++++.. +..+.. |. ..+.+++|+|++++|++|
T Consensus 187 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (420)
T 3vl1_A 187 IAIIDRGRNVLSASLDGTIRLWECGTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG 265 (420)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEeECCCCce-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE
Confidence 999 478999999999999999997764 455543 32 445556668999999999
Q ss_pred ECCCcEEEEeCCCCCCCCcceeeeee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-eEEEe--CCCC
Q 012679 286 GNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSVD--TGSQ 361 (458)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~~~--~~~~ 361 (458)
+.||.|++||++.... +..+ ..|...|.+++|+|++..++++++ .||.|++||+++++. +..+. +...
T Consensus 266 ~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~ 337 (420)
T 3vl1_A 266 HVSGVITVHNVFSKEQ------TIQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLINEGTP 337 (420)
T ss_dssp ETTSCEEEEETTTCCE------EEEECCTTSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred cCCCeEEEEECCCCce------eEEcccccCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhccCCCC
Confidence 9999999999988764 3333 468899999999998886888877 899999999999754 55554 4566
Q ss_pred eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc---------eeeEEEeCCCCcEEEEEEcCCCC---EEEEEeCCCcEEE
Q 012679 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSM---------VKMAELSGHTSRVLFMAQSPDGC---TVASAAADETLRF 429 (458)
Q Consensus 362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~---------~~~~~~~~h~~~V~~l~~spdg~---~l~s~s~Dg~i~i 429 (458)
+.++.+ ++++.+++ +..|+.|++|++... .....+.+|...|.+++|+|++. .|++++.+|.+.+
T Consensus 338 v~~~~~-~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 338 INNVYF-AAGALFVS--SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp EEEEEE-ETTEEEEE--ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred ceEEEe-CCCCEEEE--ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 777755 57777777 558999999998763 22334667889999999999999 7888889999999
Q ss_pred EecCC
Q 012679 430 WNVFG 434 (458)
Q Consensus 430 W~~~~ 434 (458)
|++.+
T Consensus 415 ~~~~~ 419 (420)
T 3vl1_A 415 YNLSN 419 (420)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 99865
No 59
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-34 Score=283.91 Aligned_cols=246 Identities=24% Similarity=0.443 Sum_probs=210.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCc------------------ccEEEEEe--CCCeEE
Q 012679 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR------------------SRVGSLAW--NNHILT 240 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~------------------~~v~~l~~--~~~~l~ 240 (458)
+|...|++++|+|||++||+|+ ++.++||++.+++.+..+.. |. ..|.+++| ++.+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSD-DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecC-ccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 5899999999999999999986 67999999999998887764 32 24899999 478999
Q ss_pred EEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeE
Q 012679 241 TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320 (458)
Q Consensus 241 sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 320 (458)
+|+.||.|++||+.++. .+..+.+|...|.+++|+|++++|++|+.|++|++||++++.. ...+ .+...+.+
T Consensus 140 s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~------~~~~-~~~~~v~~ 211 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC------SLTL-SIEDGVTT 211 (393)
T ss_dssp EEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------EEEE-ECSSCEEE
T ss_pred EEcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee------EEEE-EcCCCcEE
Confidence 99999999999998765 4678899999999999999999999999999999999988754 4444 35678999
Q ss_pred EEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--------TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 321 l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
++|+|....++++++ .|+.|++||++++..+..+. +...|.+++|+|+++.|++ |..|+.|++||+.+
T Consensus 212 ~~~~~~~~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s--~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 212 VAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQN 287 (393)
T ss_dssp EEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE--EETTSEEEEEEC--
T ss_pred EEEECCCCCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE--EeCCCEEEEEECCC
Confidence 999996667777776 99999999999999887762 4567999999999999988 55899999999975
Q ss_pred c------------eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 393 M------------VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 393 ~------------~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
. .....+.+|...|.+++|+|++.+|++|+.||.|++||+..+.....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 3 34567889999999999999999999999999999999988776544
No 60
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-34 Score=286.91 Aligned_cols=274 Identities=21% Similarity=0.409 Sum_probs=241.8
Q ss_pred ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
.+.++.++++.+++++.||.|++||+.+++. +..+.+|.+.|.+++|+ +++|++|+.||.|++||+.+++.+..+.
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 196 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKC--LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY 196 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCCE--EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCCCcE--EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence 3567888889999999999999999999886 77888999999999997 6699999999999999999999999998
Q ss_pred CCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC
Q 012679 223 GGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN 302 (458)
Q Consensus 223 ~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~ 302 (458)
. |...|.+++|++..+++|+.||.|++||++++.. +..+.+|...|.++.| ++++|++|+.||.|++||+++...
T Consensus 197 ~-h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~- 271 (445)
T 2ovr_B 197 G-HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC- 271 (445)
T ss_dssp C-CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE-
T ss_pred C-CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE-
Confidence 7 9999999999999999999999999999997764 6778899999999999 789999999999999999987755
Q ss_pred CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCC
Q 012679 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFT 381 (458)
Q Consensus 303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~ 381 (458)
+..+.+|...|.+++| + ...+++++ .|+.|++||+++++++..+.. ...+.++.+ +++.+++ |..
T Consensus 272 -----~~~~~~~~~~v~~~~~--~-~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--~~~ 337 (445)
T 2ovr_B 272 -----LHTLQGHTNRVYSLQF--D-GIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVS--GNA 337 (445)
T ss_dssp -----EEEECCCSSCEEEEEE--C-SSEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEE--EET
T ss_pred -----eEEecCCCCceEEEEE--C-CCEEEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEE--EeC
Confidence 7788899999999999 3 34566665 899999999999999988865 455777766 4567777 558
Q ss_pred CCcEEEEeCCCceeeEEEeC---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 382 QNQLTLWKYPSMVKMAELSG---HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 382 d~~i~iwd~~~~~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
||.|++||+.+++.+..+.+ |...|++++|+ +.+|++|+.||.|++||+.+++.+...
T Consensus 338 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 99999999999999999986 88899999995 679999999999999999988766544
No 61
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=282.51 Aligned_cols=291 Identities=18% Similarity=0.211 Sum_probs=229.5
Q ss_pred cccceeeccC---CCeEEEEcCCEEEEEECCCCCeeeEEEe-----------cCCCCCEEEEEEcC-CCCEEEEEecCCe
Q 012679 142 YYLNLLDWGS---SNVLAIALGSTVYLWDASDGTTSELVTV-----------DDENGPVTSVNWAP-DGRHIAIGLNNCQ 206 (458)
Q Consensus 142 ~~~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~~~~~~~-----------~~h~~~V~~v~~s~-~g~~la~g~~dg~ 206 (458)
..+++++|++ +.+++++.||.|++||+.+++....... .+|...|++++|+| ++.+|++++.||.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 3578889976 4478888899999999998765433332 25899999999999 7889999999999
Q ss_pred EEEEeCCCceeeEEecCCCcccEEEEEeC-----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-
Q 012679 207 VQLWDSTANRQLRTLRGGHRSRVGSLAWN-----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ- 280 (458)
Q Consensus 207 v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~- 280 (458)
|++||+.+++.+..+. +...+.++.|. +.++++|+.+|.|++||++++.. +..+.+|...|.+++|+|+++
T Consensus 124 i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 200 (408)
T 4a11_B 124 LKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDY 200 (408)
T ss_dssp EEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTT
T ss_pred EEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCc
Confidence 9999999999888887 77889999983 35999999999999999987764 678889999999999999998
Q ss_pred EEEEEECCCcEEEEeCCCCCCCCc----------ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679 281 QLASGGNDNLLHIWDRSMASSNSV----------TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 281 ~l~sg~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
+|++|+.||.|++||++....... .........|...|.+++|+|++..+ ++++ .|+.|++||+.++
T Consensus 201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~--~dg~i~vwd~~~~ 277 (408)
T 4a11_B 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL-LTVG--TDNRMRLWNSSNG 277 (408)
T ss_dssp EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE-EEEE--TTSCEEEEETTTC
T ss_pred EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE-EEec--CCCeEEEEECCCC
Confidence 589999999999999987652100 00112235788999999999975554 5554 8999999999998
Q ss_pred CeeEEEeCC------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC
Q 012679 351 ACLNSVDTG------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD 424 (458)
Q Consensus 351 ~~~~~~~~~------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 424 (458)
+........ ..+........+..++++ ..++.|++||+.+++.+..+.+|...|++++|+|++++|++++.|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV--PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE--EETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccceeccccccccccccceeEEecCCCceEEEE--ecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 865543221 112222223334444443 368999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCcccc
Q 012679 425 ETLRFWNVFGAPQVIS 440 (458)
Q Consensus 425 g~i~iW~~~~~~~~~~ 440 (458)
|.|++|++...+.+..
T Consensus 356 g~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 356 CNILAWVPSLYEPVPD 371 (408)
T ss_dssp SCEEEEEECC------
T ss_pred CeEEEEeCCCCCccCC
Confidence 9999999998776543
No 62
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=275.85 Aligned_cols=251 Identities=23% Similarity=0.409 Sum_probs=202.7
Q ss_pred eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc--eeeEEec-CCCcccEEEEEeC--CCeEEEEeCCCcEE
Q 012679 175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN--RQLRTLR-GGHRSRVGSLAWN--NHILTTGGMDGLII 249 (458)
Q Consensus 175 ~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~--~~~~~~~-~~~~~~v~~l~~~--~~~l~sg~~dg~i~ 249 (458)
.+..+.+|.+.|.+++|+|+ +||+|+.||.|++||+.++ ..+..+. .+|...|.+++|+ +.+|++|+.|+.|+
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 36778899999999999987 9999999999999999875 4455553 3499999999995 68999999999999
Q ss_pred EEEccCC------CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEe
Q 012679 250 NNDVRVR------DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323 (458)
Q Consensus 250 vwd~~~~------~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 323 (458)
+||+... ......+.+|...|.+++|+|++++|++|+.|++|++||++.... ....+..+.+|...|.+++|
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~--~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE--EYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC--CCEEEEEECCCSSCEEEEEE
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC--CeEEEEEeccCCCceEEEEE
Confidence 9998532 234667889999999999999999999999999999999954321 12336678899999999999
Q ss_pred cCCCCcEEEEeCCCCCCeEEEEECCCC--CeeEEEe-CCCCeEEEEEcCC--CCeEEEEecCCCCcEEEEeCCCc-----
Q 012679 324 CPFQSNLLATGGGGGDRCIKFWNTHTG--ACLNSVD-TGSQVCALLWNKN--ERELLSSHGFTQNQLTLWKYPSM----- 393 (458)
Q Consensus 324 ~p~~~~ll~s~~g~~d~~i~lwd~~~~--~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~g~~d~~i~iwd~~~~----- 393 (458)
+|++ .+|++++ .|++|++||..++ +++..+. +...|.++.|+|+ +..+++ |..|+.|++||+...
T Consensus 162 ~p~~-~~l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 162 HPSE-ALLASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS--GSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp CSSS-SEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE--EETTSCEEEEEEEEECTTSC
T ss_pred CCCC-CEEEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE--EeCCCeEEEEEecCCCcccc
Confidence 9975 5666666 8999999998876 5666665 4568999999998 556666 558999999998754
Q ss_pred ---eeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 394 ---VKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 394 ---~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.....+.+ |...|.+++|++++ +|++++.||+|++|++..+
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 34455555 89999999999766 7999999999999998765
No 63
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-35 Score=290.70 Aligned_cols=283 Identities=19% Similarity=0.329 Sum_probs=231.2
Q ss_pred cccceeeccCCCeEE---EEcCCEEEEEECCCCCe--eeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCc
Q 012679 142 YYLNLLDWGSSNVLA---IALGSTVYLWDASDGTT--SELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 142 ~~~~~~~~~~~~~la---~~~d~~v~iwd~~~~~~--~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~ 215 (458)
+..+.+.+++..+.. ++.||.|+||++..... ..+..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345567787765443 46789999999865421 12445778999999999999 9999999999999999999987
Q ss_pred -------eeeEEecCCCcccEEEEEeC--C-CeEEEEeCCCcEEEEEccCCCeeEEEE--cccccceEeEEEcCCCCEEE
Q 012679 216 -------RQLRTLRGGHRSRVGSLAWN--N-HILTTGGMDGLIINNDVRVRDHIVETY--RGHNQEVCGLKWSASGQQLA 283 (458)
Q Consensus 216 -------~~~~~~~~~~~~~v~~l~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~ 283 (458)
+.+..+.+ |...|.+++|+ + .+|++|+.||.|++||++++.. +..+ .+|...|.+++|+|++++|+
T Consensus 115 ~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 115 GLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp CCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCEEE
Confidence 56777776 99999999995 3 6899999999999999997764 5667 78999999999999999999
Q ss_pred EEECCCcEEEEeCCCCCCCCcceeeeee-cccccc-eeEEEecCCCCcEEEEe-CCCCCCeEEEEECCCCCe---eEEEe
Q 012679 284 SGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSA-VKAIAWCPFQSNLLATG-GGGGDRCIKFWNTHTGAC---LNSVD 357 (458)
Q Consensus 284 sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~-v~~l~~~p~~~~ll~s~-~g~~d~~i~lwd~~~~~~---~~~~~ 357 (458)
+++.||.|++||++.+.. +..+ ..|... +.+++|+|+ ..+++++ +++.|+.|++||+++++. ...+.
T Consensus 193 ~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTV------VAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp EEETTSEEEEEETTTTEE------EEEEECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred EEecCCcEEEEeCCCCce------eeeeccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 999999999999988765 6666 677766 899999997 4566665 113899999999998764 33335
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee-eEEEeC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK-MAELSG--HTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~-~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
+...+.+++|+|+++.++++ |..|+.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++..
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~-g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLC-GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEE-ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred CCCceeEEEEcCCCCEEEEE-EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 66789999999999999765 55799999999998774 444443 5689999999999998764 677999999987
Q ss_pred CC
Q 012679 435 AP 436 (458)
Q Consensus 435 ~~ 436 (458)
+.
T Consensus 343 ~~ 344 (402)
T 2aq5_A 343 RK 344 (402)
T ss_dssp TE
T ss_pred Cc
Confidence 53
No 64
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.7e-34 Score=274.09 Aligned_cols=251 Identities=21% Similarity=0.295 Sum_probs=205.4
Q ss_pred eEEEecCCCCCEEEEEE-----cC-CCCEEEEEecCCeEEEEeCCCc-------eeeEEecCCCcccEEEEEeC--CCeE
Q 012679 175 ELVTVDDENGPVTSVNW-----AP-DGRHIAIGLNNCQVQLWDSTAN-------RQLRTLRGGHRSRVGSLAWN--NHIL 239 (458)
Q Consensus 175 ~~~~~~~h~~~V~~v~~-----s~-~g~~la~g~~dg~v~iwd~~~~-------~~~~~~~~~~~~~v~~l~~~--~~~l 239 (458)
....+.+|.+.|++++| ++ ++++|++|+.||+|+|||+.+. .....+.+ |...|.+++|+ +.+|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTTEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCCEE
Confidence 35678899999999999 77 9999999999999999998753 34556666 99999999994 6899
Q ss_pred EEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccccee
Q 012679 240 TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK 319 (458)
Q Consensus 240 ~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 319 (458)
++|+.|++|++||++++.. +..+.+|...|.+++|+|++++|++|+.|+.|++||+..... ........|...|.
T Consensus 92 ~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK----FSSAEKENHSDWVS 166 (343)
T ss_dssp EEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE----EECCTTTSCSSCEE
T ss_pred EEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce----eeeecccCCCceee
Confidence 9999999999999998764 678889999999999999999999999999999999873321 00122237889999
Q ss_pred EEEecCCCC---------cEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 320 AIAWCPFQS---------NLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 320 ~l~~~p~~~---------~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
+++|+|++. .++++++ .|+.|++||. +++....+. +...|.+++|+|++++|++ |..|+.|++||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s--gs~dg~v~iwd 241 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVG--WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT--GGKDKKLLIWD 241 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEE--TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE--EETTCEEEEEE
T ss_pred eeeeccccccccccCCCCCEEEEEc--CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE--EcCCCeEEEEE
Confidence 999999763 5777776 8999999994 455555554 5678999999999999998 55899999999
Q ss_pred CCC-ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 390 YPS-MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 390 ~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
+.. ......+ .+...|.+++|+|++.+++ ++.|+.|++|++......
T Consensus 242 ~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 242 ILNLTYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKA 289 (343)
T ss_dssp SSCCSSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSC
T ss_pred CCCCcccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCC
Confidence 954 3444444 3556799999999998876 456888999999876543
No 65
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.1e-34 Score=274.81 Aligned_cols=257 Identities=17% Similarity=0.302 Sum_probs=215.1
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----eeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEE
Q 012679 178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----RQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLII 249 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~ 249 (458)
.+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.. |...|.+++|+ +.+|++|+.||.|+
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 35689999999999999999999999999999999876 45566666 99999999994 68999999999999
Q ss_pred EEEccCCC--------eeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCCcceeee-------eec
Q 012679 250 NNDVRVRD--------HIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLH-------RLE 312 (458)
Q Consensus 250 vwd~~~~~--------~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------~~~ 312 (458)
+||++.+. .....+.+|...|.+++|+|+ +++|++++.||.|++||++............ ...
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99998764 446778899999999999999 9999999999999999998876533221111 112
Q ss_pred ccccceeEEEecCC--CCcEEEEeCCCCCCeEEEEECCCCCe--eEEEe-CCCCeEEEEEcCCC----CeEEEEecCCCC
Q 012679 313 EHTSAVKAIAWCPF--QSNLLATGGGGGDRCIKFWNTHTGAC--LNSVD-TGSQVCALLWNKNE----RELLSSHGFTQN 383 (458)
Q Consensus 313 ~h~~~v~~l~~~p~--~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~-~~~~v~~~~~s~~~----~~l~~~~g~~d~ 383 (458)
.|...+.+++|+|+ ...++++++ .|+.+.+|+...+.. +..+. +...|.+++|+|++ +.+++ |..||
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--~~~dg 240 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--GCKDG 240 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--EETTS
T ss_pred CcccceeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--EcCCC
Confidence 57889999999997 356666665 899998888888775 44443 45789999999998 66766 55899
Q ss_pred cEEEEeCCCc----------------------------------------------eeeEEEeCCCCcEEEEEEcCCCCE
Q 012679 384 QLTLWKYPSM----------------------------------------------VKMAELSGHTSRVLFMAQSPDGCT 417 (458)
Q Consensus 384 ~i~iwd~~~~----------------------------------------------~~~~~~~~h~~~V~~l~~spdg~~ 417 (458)
.|++||+..+ +.+..+.+|...|++++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 9999999764 677788899999999999999999
Q ss_pred EEEEeCCCcEEEEecCCCCccc
Q 012679 418 VASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 418 l~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
|++++.||.|++|++..+....
T Consensus 321 l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCEE
T ss_pred EEEecCCCcEEEEecCcCcchh
Confidence 9999999999999998766543
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=284.47 Aligned_cols=284 Identities=11% Similarity=0.242 Sum_probs=223.7
Q ss_pred CCCccccceeeccC--CCeEEEEcCCEEEEEECCCCC---------eeeEEEecCCC------------CCEEEEEEcCC
Q 012679 138 LVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGT---------TSELVTVDDEN------------GPVTSVNWAPD 194 (458)
Q Consensus 138 ~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~---------~~~~~~~~~h~------------~~V~~v~~s~~ 194 (458)
+.+.-.+.+++|++ +.+++++.||.|+|||+.+++ ......+.+|. ..|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 44556789999988 347778889999999998765 12366778898 88999999999
Q ss_pred C--CEEEEEecCCeEEEEeCCCceee---------------------------------------EEecCCCcccEEEEE
Q 012679 195 G--RHIAIGLNNCQVQLWDSTANRQL---------------------------------------RTLRGGHRSRVGSLA 233 (458)
Q Consensus 195 g--~~la~g~~dg~v~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~l~ 233 (458)
+ .+|++++.||.|++||+.++... ..+..+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 89999999999999998765432 233345999999999
Q ss_pred eC--CCeEEEEeCCCcEEEEEccCCCeeEE-------EEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCC
Q 012679 234 WN--NHILTTGGMDGLIINNDVRVRDHIVE-------TYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNS 303 (458)
Q Consensus 234 ~~--~~~l~sg~~dg~i~vwd~~~~~~~~~-------~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~ 303 (458)
|+ +.+|++| .||.|++||++....... .+.+|...|.+++|+|++ ++|++|+.||.|++||++......
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 94 6899998 799999999985444344 256899999999999998 999999999999999998876411
Q ss_pred cceeeeeeccccc------------ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-CCeeEEEeCCCC---------
Q 012679 304 VTQWLHRLEEHTS------------AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-GACLNSVDTGSQ--------- 361 (458)
Q Consensus 304 ~~~~~~~~~~h~~------------~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~~~~~~~~~~~--------- 361 (458)
..+..+..|.. .|.+++|+|++. ++++++ . +.|++||+++ ++++..+..+..
T Consensus 264 --~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 264 --RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp --TTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred --ceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEee--C-CeEEEEeCCCCccccceeeccccccccccccc
Confidence 11355666665 899999999755 455554 5 9999999997 888888876543
Q ss_pred -------eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC---------------------------------
Q 012679 362 -------VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--------------------------------- 401 (458)
Q Consensus 362 -------v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--------------------------------- 401 (458)
+..++|+|++++|++ |..||.|++||+.+++.+. +.+
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s--~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMT--GSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD 414 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEE--ECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred cccccccceEEEECCCCCEEEE--eccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccc
Confidence 334999999999987 6689999999999887653 332
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 402 HTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 402 h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
+...|..++|+|++.+||+++.++ +++|.-
T Consensus 415 ~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 415 FNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 235688999999999999988776 777764
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.9e-34 Score=304.07 Aligned_cols=281 Identities=16% Similarity=0.298 Sum_probs=245.0
Q ss_pred ccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.+.+++|+++ .+++++.+|.|+|||+.+++. +..+.+|...|++++|+|++++|++|+.||.|+|||+.+++.+..
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 92 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE--VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCce--EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 4788999983 477777899999999999876 667778999999999999999999999999999999999999999
Q ss_pred ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCC
Q 012679 221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~ 297 (458)
+.. |...|.+++|+ +..|++|+.||.|++||+.++......+.+|...|.+++|+| +++.|++++.||.|++||+.
T Consensus 93 ~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~ 171 (814)
T 3mkq_A 93 FEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (814)
T ss_dssp EEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred Eec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 987 99999999995 679999999999999999988677788889999999999999 89999999999999999998
Q ss_pred CCCCCCcceeeeeecc-cccceeEEEecC--CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCe
Q 012679 298 MASSNSVTQWLHRLEE-HTSAVKAIAWCP--FQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERE 373 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~-h~~~v~~l~~~p--~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~ 373 (458)
.... ...+.. +...+.+++|+| ++. ++++++ .|+.|++||+.+++++..+. +...+.+++|+|++..
T Consensus 172 ~~~~------~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 242 (814)
T 3mkq_A 172 QSTP------NFTLTTGQERGVNYVDYYPLPDKP-YMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (814)
T ss_dssp CSSC------SEEEECCCTTCCCEEEECCSTTCC-EEEEEC--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CCcc------eeEEecCCCCCEEEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 7665 344444 448899999999 544 556655 89999999999999998887 4578999999999999
Q ss_pred EEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEecCCCCc
Q 012679 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT-VASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 374 l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~-l~s~s~Dg~i~iW~~~~~~~ 437 (458)
+++ |..||.|++||+.+++.+..+..|...|.+++|+|+|.. +++++.|+.+.+|++.....
T Consensus 243 l~~--~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 243 IIS--GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EEE--EETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred EEE--EeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 988 458999999999999999999999999999999999873 24455577789999876543
No 68
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=277.87 Aligned_cols=251 Identities=17% Similarity=0.308 Sum_probs=212.0
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC--CceeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST--ANRQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLII 249 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~ 249 (458)
+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.. |...|.+++|. +.+|++|+.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 45567899999999999999999999999999999998 6667777876 99999999995 78999999999999
Q ss_pred EEEccCCC-eeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679 250 NNDVRVRD-HIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 250 vwd~~~~~-~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
+||+.++. .....+..|...|.+++|+|+ +.+|++++.|+.|++||++..... ....+..|...|.+++|+|.
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT----SPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----CEEEEECCTTCEEEEEECCC
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----eeEEecCCCCceEEEEEcCc
Confidence 99999775 246677889999999999999 999999999999999999887442 14566789999999999995
Q ss_pred ------------CCcEEEEeCCCCCCeEEEEECCCCCee----EEEe-CCCCeEEEEEcCC---CCeEEEEecCCCCcEE
Q 012679 327 ------------QSNLLATGGGGGDRCIKFWNTHTGACL----NSVD-TGSQVCALLWNKN---ERELLSSHGFTQNQLT 386 (458)
Q Consensus 327 ------------~~~ll~s~~g~~d~~i~lwd~~~~~~~----~~~~-~~~~v~~~~~s~~---~~~l~~~~g~~d~~i~ 386 (458)
...++++++ .|+.|++||++++... ..+. +...|.+++|+|+ +.++++ +..|+.|+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s--~~~dg~i~ 234 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCI 234 (379)
T ss_dssp C----------CTTCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEE
T ss_pred cccccccccCCCCCCEEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE--EeCCCEEE
Confidence 356666666 8999999999887533 3343 4678999999999 778877 45899999
Q ss_pred EEeCCCce-----eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 387 LWKYPSMV-----KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 387 iwd~~~~~-----~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
+||+.++. .+.....|...|++++|+|+|++|++++.||.|++|++...
T Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99998863 22223448899999999999999999999999999999743
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-33 Score=291.82 Aligned_cols=282 Identities=16% Similarity=0.299 Sum_probs=243.2
Q ss_pred ccccceeeccC-CCeEEEEcCCEEEEEECCCC----CeeeEEEecCCCCC-EEEEEEcC--CCCEEEEEecCCeEEEEeC
Q 012679 141 DYYLNLLDWGS-SNVLAIALGSTVYLWDASDG----TTSELVTVDDENGP-VTSVNWAP--DGRHIAIGLNNCQVQLWDS 212 (458)
Q Consensus 141 d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~----~~~~~~~~~~h~~~-V~~v~~s~--~g~~la~g~~dg~v~iwd~ 212 (458)
...+.+++|++ +++++.+.++.|++||+.++ +. ...+.+|... |++++|+| ++++||+|+.||.|+|||+
T Consensus 18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPP--VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCS--EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCeEEEEECCCCCCcccc--ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 45678899988 55777777999999999987 54 6778899999 99999999 9999999999999999999
Q ss_pred CCc--------eeeEEecCCCcccEEEEEeC--CCeEEEEeCC----CcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679 213 TAN--------RQLRTLRGGHRSRVGSLAWN--NHILTTGGMD----GLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS 278 (458)
Q Consensus 213 ~~~--------~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd 278 (458)
.++ +.+..+.. |...|.+++|+ +.+|++++.+ +.|.+||. +. ....+.+|...|.+++|+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 96 TFDKESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEGGGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CC-EEEECCSCSSCEEEEEECSS
T ss_pred CCCcccccccccccchhhc-ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CC-cceeeecCCccEEEEEECCC
Confidence 754 66677776 99999999994 6899999887 78888883 33 46788899999999999999
Q ss_pred CC-EEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc---ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE
Q 012679 279 GQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS---AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN 354 (458)
Q Consensus 279 ~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~ 354 (458)
++ +|++++.|+.|++||+..... +..+..|.. .|.+++|+|++..++++++ .|+.|++||+.+++.+.
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKF------SASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDRKISCFDGKSGEFLK 243 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEE------EEEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTCCEEEEETTTCCEEE
T ss_pred CCcEEEEEeCCCcEEEEeCCCcce------eeeecccCCCCceEEEEEECCCCCCEEEEEe--CCCeEEEEECCCCCEeE
Confidence 98 899999999999999887655 778888998 9999999998345566655 89999999999999999
Q ss_pred EE-----eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC----CCcEEEEEEcCCCCEEEEEeCCC
Q 012679 355 SV-----DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH----TSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 355 ~~-----~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h----~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
.+ .+...|.+++|+ ++..++++ ..|+.|++||+.+++.+..+..+ ...+.++.|+ ++.++++++.||
T Consensus 244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g 319 (615)
T 1pgu_A 244 YIEDDQEPVQGGIFALSWL-DSQKFATV--GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG 319 (615)
T ss_dssp ECCBTTBCCCSCEEEEEES-SSSEEEEE--ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred EecccccccCCceEEEEEc-CCCEEEEE--cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence 98 567889999999 99999884 47999999999999999999877 3678888886 899999999999
Q ss_pred cEEEEecCCCCcccc
Q 012679 426 TLRFWNVFGAPQVIS 440 (458)
Q Consensus 426 ~i~iW~~~~~~~~~~ 440 (458)
.|++||+........
T Consensus 320 ~i~~~d~~~~~~~~~ 334 (615)
T 1pgu_A 320 TLNFYELGHDEVLKT 334 (615)
T ss_dssp CEEEEETTEEEEEEE
T ss_pred CEEEEECCCCcEEEE
Confidence 999999987554443
No 70
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.8e-33 Score=279.61 Aligned_cols=272 Identities=17% Similarity=0.257 Sum_probs=234.6
Q ss_pred ccccceeeccCC-CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEc--CCCCEEEEEecCCeEEEEeCCCcee
Q 012679 141 DYYLNLLDWGSS-NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWA--PDGRHIAIGLNNCQVQLWDSTANRQ 217 (458)
Q Consensus 141 d~~~~~~~~~~~-~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s--~~g~~la~g~~dg~v~iwd~~~~~~ 217 (458)
...+.++.|+++ .+++++.||+|++||+.+++. +..+.+|...|.+++|+ +++.+|++|+.||.|++||+.++..
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE--EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 346788999874 688888999999999999876 67788999999999998 5789999999999999999987653
Q ss_pred -----------------------eEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEE
Q 012679 218 -----------------------LRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK 274 (458)
Q Consensus 218 -----------------------~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~ 274 (458)
+..+.+ |...|.++..++.++++|+.||.|++||+++... +..+.+|...|.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~ 317 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRG-HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTI 317 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE
T ss_pred cccccccCCcceEeeccCCCeEEEEEccC-ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEE
Confidence 334444 9999999999999999999999999999987654 678889999999999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE
Q 012679 275 WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN 354 (458)
Q Consensus 275 ~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~ 354 (458)
|+|++++|++|+.||.|++||++++.. +..+.+|...|.+++|++ ..+++++ .||.|++||+.++....
T Consensus 318 ~~~~~~~l~sg~~dg~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~---~~l~s~s--~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 318 YDHERKRCISASMDTTIRIWDLENGEL------MYTLQGHTALVGLLRLSD---KFLVSAA--ADGSIRGWDANDYSRKF 386 (464)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEE------EEEECCCSSCEEEEEECS---SEEEEEE--TTSEEEEEETTTCCEEE
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcE------EEEEeCCCCcEEEEEEcC---CEEEEEe--CCCcEEEEECCCCceee
Confidence 999999999999999999999988765 788899999999999984 5667766 89999999999999888
Q ss_pred EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE-EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 355 SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE-LSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 355 ~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
.......+..++|++++..++++ . ++.|++||+.+++.+.. +.+|...|.+++|+ +..++++++.||.+.+|-
T Consensus 387 ~~~~~~~~~~~~~~~~~~~l~~~--~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 387 SYHHTNLSAITTFYVSDNILVSG--S-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEECTTCCCEEEEEECSSEEEEE--E-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred eecCCCCccEEEEEeCCCEEEEe--c-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 88888889999999999988884 3 89999999999999886 67889999999997 344555556676655543
No 71
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-33 Score=313.41 Aligned_cols=283 Identities=21% Similarity=0.340 Sum_probs=245.2
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
..+.++.|++ ..+++++.||.|++||+.+++. +..+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+.
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~ 693 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEK--LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH 693 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE--EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 4578889987 4577788899999999999886 77788999999999999999999999999999999999999999
Q ss_pred EecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679 220 TLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd 295 (458)
.+.. |...|.+++|+ +.++++|+.||.|++||++++.. ...+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 694 ~~~~-~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 694 TYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771 (1249)
T ss_dssp EEEC-CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred EEcC-CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence 9987 99999999994 35899999999999999998764 678889999999999999999999999999999999
Q ss_pred CCCCCCCCcceee-------eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--CCCCeEEEE
Q 012679 296 RSMASSNSVTQWL-------HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--TGSQVCALL 366 (458)
Q Consensus 296 ~~~~~~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--~~~~v~~~~ 366 (458)
+..+......... .....+...+.+++|+|++..+++. .++.+.+||+.++..+..+. +...+.+++
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA----AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE----ETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE----cCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 9876541110000 0011233478899999987766654 36899999999999888875 457899999
Q ss_pred EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 367 WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 367 ~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
|+|++..+++ |..++.|++|++.++..+..+.+|...|.+++|+|+|.+|++++.||.|++|++..
T Consensus 848 ~sp~~~~l~~--~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 848 FSPYDHLAVI--ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp ECSSTTEEEE--ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EcCCCCEEEE--EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 9999999998 55899999999999999999999999999999999999999999999999999764
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2e-33 Score=264.13 Aligned_cols=242 Identities=21% Similarity=0.360 Sum_probs=199.9
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCce--
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANR-- 216 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~-- 216 (458)
.+++++|++ ..+++++.|++|+|||+.++....+..+.+|.+.|++++|++ ++++||+|+.||+|+|||+.+++
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS 90 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence 567777776 568889999999999998654444778899999999999986 48999999999999999998874
Q ss_pred eeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcCC-------------
Q 012679 217 QLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSAS------------- 278 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spd------------- 278 (458)
.+..+.. |...|.+++|+ +.+|++|+.||.|++||++.... ....+.+|...|.+++|+|+
T Consensus 91 ~~~~~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~ 169 (297)
T 2pm7_B 91 QIAVHAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (297)
T ss_dssp CCEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------
T ss_pred EEEEeec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCC
Confidence 4556665 99999999995 57999999999999999987642 24567799999999999997
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC--CcEEEEeCCCCCCeEEEEECCCCC--e-e
Q 012679 279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ--SNLLATGGGGGDRCIKFWNTHTGA--C-L 353 (458)
Q Consensus 279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~ll~s~~g~~d~~i~lwd~~~~~--~-~ 353 (458)
+++|++|+.|+.|++||++..... ......+.+|...|.+++|+|++ ..++++++ .|++|++||+.++. . .
T Consensus 170 ~~~l~sgs~D~~v~lwd~~~~~~~--~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~~~ 245 (297)
T 2pm7_B 170 SRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPWKK 245 (297)
T ss_dssp CCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEE
T ss_pred cceEEEEcCCCcEEEEEEcCCCce--EEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCccce
Confidence 579999999999999998865421 12256788999999999999986 57888877 99999999998753 1 1
Q ss_pred EEE---eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 354 NSV---DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 354 ~~~---~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
..+ .+...|.+++|+|+++.|+++ ..|+.|+||+..
T Consensus 246 ~~~~~~~~~~~v~~~~~s~~g~~las~--~~D~~v~lw~~~ 284 (297)
T 2pm7_B 246 TLLKEEKFPDVLWRASWSLSGNVLALS--GGDNKVTLWKEN 284 (297)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEEE--ETTSCEEEEEEC
T ss_pred eeeecccCCCcEEEEEECCCCCEEEEE--cCCCcEEEEEEC
Confidence 222 235679999999999999984 479999999976
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.4e-34 Score=276.53 Aligned_cols=252 Identities=18% Similarity=0.303 Sum_probs=214.4
Q ss_pred EEEecCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEeCCCceeeEEecC-CCcccEEEEEeCC---CeEEEEeCCCcEEE
Q 012679 176 LVTVDDENGPVTSVNWAPDG-RHIAIGLNNCQVQLWDSTANRQLRTLRG-GHRSRVGSLAWNN---HILTTGGMDGLIIN 250 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g-~~la~g~~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~~~---~~l~sg~~dg~i~v 250 (458)
...+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+.. +|...|.+++|++ .+|++++.||.|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 55678899999999999999 9999999999999999998887777652 4999999999954 79999999999999
Q ss_pred EEccCCCeeEEEEc---ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679 251 NDVRVRDHIVETYR---GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 251 wd~~~~~~~~~~~~---~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 327 (458)
||++.. ....+. .|...|.+++|+|++++|++|+.|+.|++||++ ... +..+..|...|.+++|+|++
T Consensus 146 wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~------~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 146 RDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHE------IFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp EETTSC--EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCE------EEEEECSSSCEEEEEECSSC
T ss_pred EECCCC--ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCE------EEEeccCCCcEEEEEECCCC
Confidence 999853 244444 345889999999999999999999999999984 322 67888999999999999988
Q ss_pred CcEEEEeCCCCCCeEEEEECCC----CCeeEEEeCCCCeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679 328 SNLLATGGGGGDRCIKFWNTHT----GACLNSVDTGSQVCALLWNK-NERELLSSHGFTQNQLTLWKYPSMVKMAELSGH 402 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h 402 (458)
..++++++ .|+.|++||+++ +.++..+.+...|.+++|+| ++.++++ +..|+.|++||+.+++.+..+.+|
T Consensus 217 ~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 217 DWLMATSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT--TDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp TTEEEEEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE--EESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCEEEEEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE--EcCCCcEEEEECCCCccccccccc
Confidence 87888877 899999999998 77888888889999999999 9999988 447999999999998877777655
Q ss_pred C-----------------CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 403 T-----------------SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 403 ~-----------------~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
. ..+..++|+|+|++ +++.||.|++||+..+..+....
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence 3 34455677777766 77899999999998887765543
No 74
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-33 Score=274.69 Aligned_cols=257 Identities=16% Similarity=0.186 Sum_probs=220.2
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce------eeEEecCCCcccEEEEEe--C----C---CeEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR------QLRTLRGGHRSRVGSLAW--N----N---HILT 240 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~------~~~~~~~~~~~~v~~l~~--~----~---~~l~ 240 (458)
...+.+|.+.|++++|+| ++|++|+.||.|+|||+.+++ .+..+.. |...|.+++| + + .+|+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEec-CCCcEEEEEEecccccCCccccEEE
Confidence 456779999999999998 799999999999999999887 6777776 9999999999 4 6 7999
Q ss_pred EEeCCCcEEEEEccCCCe----eEEEEccc-----ccceEeEEEc----CCCCE-EEEEECCCcEEEEeCCC------CC
Q 012679 241 TGGMDGLIINNDVRVRDH----IVETYRGH-----NQEVCGLKWS----ASGQQ-LASGGNDNLLHIWDRSM------AS 300 (458)
Q Consensus 241 sg~~dg~i~vwd~~~~~~----~~~~~~~h-----~~~v~~l~~s----pd~~~-l~sg~~dg~i~iwd~~~------~~ 300 (458)
+++.||.|++||+.+... ....+..| ...|.+++|+ |++++ |++|+.||.|++||+.. ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999987653 15677788 5899999999 99999 99999999999999987 44
Q ss_pred CCCcceeeeee-------cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-------CCCeEEEE
Q 012679 301 SNSVTQWLHRL-------EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-------GSQVCALL 366 (458)
Q Consensus 301 ~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-------~~~v~~~~ 366 (458)
... ..+...+ ..|...|.+++|+|++ ++++++ .|+.|++||+++++++..+.. ...+.+++
T Consensus 166 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 166 TLN-WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred eee-ccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 411 0111144 4588999999999987 777776 899999999999999999886 78899999
Q ss_pred EcCCCCeEEEEecCCC---CcEEEEeCCCceeeEEEeC-------------CCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679 367 WNKNERELLSSHGFTQ---NQLTLWKYPSMVKMAELSG-------------HTSRVLFMAQSPDGCTVASAAADETLRFW 430 (458)
Q Consensus 367 ~s~~~~~l~~~~g~~d---~~i~iwd~~~~~~~~~~~~-------------h~~~V~~l~~spdg~~l~s~s~Dg~i~iW 430 (458)
|+|++++++++ ..+ +.|++||+.+++.+..+.+ |...|.+++|+|++++|++++.||.|++|
T Consensus 241 ~~~~~~~l~~~--~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 241 FSPQGSLLAIA--HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp ECSSTTEEEEE--EEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred ECCCCCEEEEE--ecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99999999984 467 9999999999999999998 99999999999999999999999999999
Q ss_pred ecCCCCcccccC
Q 012679 431 NVFGAPQVISKS 442 (458)
Q Consensus 431 ~~~~~~~~~~~~ 442 (458)
|+..........
T Consensus 319 d~~~~~~~~~~~ 330 (397)
T 1sq9_A 319 DVKTKERITTLN 330 (397)
T ss_dssp ETTTTEEEEEEE
T ss_pred EcCCCceeEEEe
Confidence 998876655443
No 75
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.1e-33 Score=277.99 Aligned_cols=252 Identities=22% Similarity=0.408 Sum_probs=214.9
Q ss_pred EEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCC----------ceeeEEecCCCcccEEEEEeC--CC-eEEEE
Q 012679 177 VTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTA----------NRQLRTLRGGHRSRVGSLAWN--NH-ILTTG 242 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~----------~~~~~~~~~~~~~~v~~l~~~--~~-~l~sg 242 (458)
.....|.+.|++++|+|+ +.+||+|+.+|.|+|||+.+ ...+..+.. |...|.+++|+ +. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEE
Confidence 344568999999999997 78999999999999999987 567777776 99999999995 34 99999
Q ss_pred eCCCcEEEEEccCCCe------eEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccc
Q 012679 243 GMDGLIINNDVRVRDH------IVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT 315 (458)
Q Consensus 243 ~~dg~i~vwd~~~~~~------~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 315 (458)
+.||.|++||+..... ....+.+|...|.+++|+| ++.+|++++.||.|++||++..... ..+..+..|.
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~---~~~~~~~~~~ 277 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS---KPSHTVDAHT 277 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS---SCSEEEECCS
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC---cceeEeecCC
Confidence 9999999999987432 1356678999999999999 7889999999999999999976421 1256677899
Q ss_pred cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-CCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-
Q 012679 316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-GACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS- 392 (458)
Q Consensus 316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~- 392 (458)
..|.+++|+|++..++++++ .|+.|++||+++ +.++..+. +...|.+++|+|+++.++++ +..|+.|+|||+..
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s-~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS-SGTDRRLHVWDLSKI 354 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE-EETTSCCEEEEGGGT
T ss_pred CCeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE-EeCCCcEEEEeCCCC
Confidence 99999999999888998887 999999999998 56677775 56789999999999865554 44799999999987
Q ss_pred -------------ceeeEEEeCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEecCCC
Q 012679 393 -------------MVKMAELSGHTSRVLFMAQSPDGC-TVASAAADETLRFWNVFGA 435 (458)
Q Consensus 393 -------------~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~~~ 435 (458)
.+.+..+.+|...|++++|+|++. +|++++.||.|+||++...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 366778889999999999999999 9999999999999999643
No 76
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6e-34 Score=275.70 Aligned_cols=281 Identities=12% Similarity=0.090 Sum_probs=208.8
Q ss_pred ccccceeeccCC-CeEEEE-cC-------CEEEEEECCCCCe--------eeEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 012679 141 DYYLNLLDWGSS-NVLAIA-LG-------STVYLWDASDGTT--------SELVTVDDENGPVTSVNWAPDGRHIAIGL- 202 (458)
Q Consensus 141 d~~~~~~~~~~~-~~la~~-~d-------~~v~iwd~~~~~~--------~~~~~~~~h~~~V~~v~~s~~g~~la~g~- 202 (458)
+|.+.+++|+++ .++++| .| +.|++|++..+.. .....+..|...|.+++++ ++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 456888999874 344444 32 3699999876542 1224567888889888765 55777664
Q ss_pred ----------cCCeEEEEeCCCceeeE----Eec----CCCcccEEEEEe--CCCeEEE--EeCCCcEEEEEccCCCeeE
Q 012679 203 ----------NNCQVQLWDSTANRQLR----TLR----GGHRSRVGSLAW--NNHILTT--GGMDGLIINNDVRVRDHIV 260 (458)
Q Consensus 203 ----------~dg~v~iwd~~~~~~~~----~~~----~~~~~~v~~l~~--~~~~l~s--g~~dg~i~vwd~~~~~~~~ 260 (458)
.|+.+++|++....... ... ..+...+.+++| +|+++++ ++.|++|++||+++... +
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~ 170 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-K 170 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-E
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-E
Confidence 46789999876543211 111 124456788888 5677664 45789999999998765 3
Q ss_pred EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC
Q 012679 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR 340 (458)
Q Consensus 261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~ 340 (458)
..+ .|...|.+++|+|||++|++++.+ .+.+|+...+.. ........|...|.+++|+|++..+++.+ .|+
T Consensus 171 ~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~----~~~~~~~~~~~~v~~v~fspdg~~l~~~s---~d~ 241 (365)
T 4h5i_A 171 FEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC----IARKTDFDKNWSLSKINFIADDTVLIAAS---LKK 241 (365)
T ss_dssp EEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE----EEEECCCCTTEEEEEEEEEETTEEEEEEE---ESS
T ss_pred EEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcc----eeeeecCCCCCCEEEEEEcCCCCEEEEEe---cCC
Confidence 444 477889999999999999999865 566666655543 11234557889999999999866665543 344
Q ss_pred ----eEEEEECCCCCee----EEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE-eCCCCcEEEEE
Q 012679 341 ----CIKFWNTHTGACL----NSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL-SGHTSRVLFMA 410 (458)
Q Consensus 341 ----~i~lwd~~~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~-~~h~~~V~~l~ 410 (458)
.+++|++..+... ..+ .+...|++++|+|++++|++ |..|+.|+|||+.+++++.++ .+|...|++++
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las--gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~ 319 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL--ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVT 319 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE--EETTSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE--EcCCCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence 6889998876542 223 34567999999999999998 558999999999999999885 78999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 411 QSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 411 ~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
|+|||++||||+.|++|+||++...
T Consensus 320 fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 320 ISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999543
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.1e-33 Score=297.54 Aligned_cols=255 Identities=18% Similarity=0.309 Sum_probs=228.8
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV 253 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 253 (458)
...+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+.. |...|.+++| ++.+|++|+.||.|++||+
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 556788999999999999999999999999999999999999999987 9999999999 4789999999999999999
Q ss_pred cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s 333 (458)
.++.. +..+.+|...|.+++|+|++++|++|+.||.|++||+..... ....+..|...|.+++|+|....++++
T Consensus 85 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 85 NTGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----LEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp TTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-----EEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred CCCcE-EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-----EEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 98765 677889999999999999999999999999999999987532 256778899999999999955667777
Q ss_pred eCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcC--CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679 334 GGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNK--NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFM 409 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l 409 (458)
++ .|+.|++||+.++.....+..+ ..+..++|+| ++..+++ |..++.|++||+.+++.+..+.+|...|.++
T Consensus 159 ~~--~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~ 234 (814)
T 3mkq_A 159 GC--LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (814)
T ss_dssp EE--TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE--ECTTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred Ee--CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 66 8999999999998887777553 6799999999 8888888 5589999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 410 AQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 410 ~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
+|+|+|.+|++++.||.|++||+.+.......
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 99999999999999999999999887655443
No 78
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-33 Score=298.69 Aligned_cols=286 Identities=15% Similarity=0.178 Sum_probs=219.6
Q ss_pred ccccceeeccCCC-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee-
Q 012679 141 DYYLNLLDWGSSN-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL- 218 (458)
Q Consensus 141 d~~~~~~~~~~~~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~- 218 (458)
...+..+.|+++. +++++.|++|++||+.+++. +..+. |.+.|++++|+|++++|++|+.||.|++||+.+++..
T Consensus 58 ~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~--~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~ 134 (902)
T 2oaj_A 58 RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKV--LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS 134 (902)
T ss_dssp CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSE--EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcE--EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 3468889999866 88899999999999999886 44554 5678999999999999999999999999999988753
Q ss_pred ----------EEecCCCcccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEccc------------------c
Q 012679 219 ----------RTLRGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGH------------------N 267 (458)
Q Consensus 219 ----------~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h------------------~ 267 (458)
..+. +|...|.+++|++ ..|++|+.||.| +||+++... ...+..| .
T Consensus 135 ~~i~~~~~~~~~~~-~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 135 FKLDNLQKSSFFPA-ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp EEECCHHHHHTCSS-SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred ceeccccccccccc-cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccccccC
Confidence 1223 4899999999965 589999999999 999997654 5555544 5
Q ss_pred cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc----------------------c-----------------e--
Q 012679 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV----------------------T-----------------Q-- 306 (458)
Q Consensus 268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~----------------------~-----------------~-- 306 (458)
..|.+++|+|+|++|++|+.||.|++||+++++.... . .
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll 291 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence 7799999999999999999999999999865432000 0 0
Q ss_pred ------------eeeeec------------------------------ccc-----------------------------
Q 012679 307 ------------WLHRLE------------------------------EHT----------------------------- 315 (458)
Q Consensus 307 ------------~~~~~~------------------------------~h~----------------------------- 315 (458)
.+..+. .+.
T Consensus 292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence 000000 000
Q ss_pred ------------------------------cceeEE----------------------------------EecCCCCcEE
Q 012679 316 ------------------------------SAVKAI----------------------------------AWCPFQSNLL 331 (458)
Q Consensus 316 ------------------------------~~v~~l----------------------------------~~~p~~~~ll 331 (458)
..|+++ +|+|+ ..++
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd-g~~l 450 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY-GTAF 450 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE-EEEE
T ss_pred CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc-CcEE
Confidence 111111 22332 3466
Q ss_pred EEeCCCCCCeEEEEECCCCCee----EEE--------eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc------
Q 012679 332 ATGGGGGDRCIKFWNTHTGACL----NSV--------DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM------ 393 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~~~~~----~~~--------~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~------ 393 (458)
++|+ .|++|++||+.++... ... .+...|.+++|+|++++|++ |..||+|+||++.++
T Consensus 451 aSgs--~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAs--gs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 451 ITGH--SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAV--SIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp EEEE--TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEE--EETTSCEEEEEEEECCC----
T ss_pred EEec--CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEE--EecCcEEEEEEecCccccCcc
Confidence 6666 8888999988877421 111 24567999999999999998 558999999998765
Q ss_pred ---------------------------------------eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 394 ---------------------------------------VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 394 ---------------------------------------~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
+++..+.+|.+.|++++||||| +||+|+.|++|++||+.+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 3467888999999999999999 999999999999999977
Q ss_pred CCcc
Q 012679 435 APQV 438 (458)
Q Consensus 435 ~~~~ 438 (458)
...+
T Consensus 606 ~~~~ 609 (902)
T 2oaj_A 606 PAII 609 (902)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 6543
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.5e-33 Score=264.53 Aligned_cols=273 Identities=13% Similarity=0.116 Sum_probs=226.1
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCC-eeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeC-CCce
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGT-TSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDS-TANR 216 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~-~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~-~~~~ 216 (458)
-.+.++.|++ ..+++++.|+.|++|++.+++ ......+.+|...|++++|+|+++ +|++|+.||.|++||+ .+++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 3578888986 458888899999999998876 112334457899999999999999 9999999999999999 8776
Q ss_pred eeEEecCC--CcccEEEEEeC-CCeEEEEeCCCcEEEEEccC---------CCeeEEEEcccccceEeEEEcCCCCEEEE
Q 012679 217 QLRTLRGG--HRSRVGSLAWN-NHILTTGGMDGLIINNDVRV---------RDHIVETYRGHNQEVCGLKWSASGQQLAS 284 (458)
Q Consensus 217 ~~~~~~~~--~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~---------~~~~~~~~~~h~~~v~~l~~spd~~~l~s 284 (458)
. ..+. + |...|.+++|+ +..|++++.||.|++||+++ ... +..+. |...|.+++|+|++ +++
T Consensus 92 ~-~~~~-~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~--l~~ 165 (342)
T 1yfq_A 92 F-QALT-NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTNSSR--LIV 165 (342)
T ss_dssp E-EECB-SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEECSSE--EEE
T ss_pred e-Eecc-ccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEecCCc--EEE
Confidence 5 3343 4 89999999997 79999999999999999986 432 33343 88999999999887 999
Q ss_pred EECCCcEEEEeCCC-CCCCCcceeeeeecccccceeEEEecC-CCCcEEEEeCCCCCCeEEEEECCCC------CeeEEE
Q 012679 285 GGNDNLLHIWDRSM-ASSNSVTQWLHRLEEHTSAVKAIAWCP-FQSNLLATGGGGGDRCIKFWNTHTG------ACLNSV 356 (458)
Q Consensus 285 g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~ll~s~~g~~d~~i~lwd~~~~------~~~~~~ 356 (458)
++.|+.|++||++. .... .......|...|.+++|+| ++. ++++++ .|+.|++|++... +....+
T Consensus 166 ~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 166 GMNNSQVQWFRLPLCEDDN----GTIEESGLKYQIRDVALLPKEQE-GYACSS--IDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp EESTTEEEEEESSCCTTCC----CEEEECSCSSCEEEEEECSGGGC-EEEEEE--TTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred EeCCCeEEEEECCcccccc----ceeeecCCCCceeEEEECCCCCC-EEEEEe--cCCcEEEEEEcCCCcccccccceee
Confidence 99999999999987 4431 1334457888999999999 765 455555 8999999999887 666676
Q ss_pred eCC----------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-CCcEEEEEEcCCCCEEEEEeCCC
Q 012679 357 DTG----------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-TSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 357 ~~~----------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
..+ ..|.+++|+|++++|++ |..||.|++||+.+++.+..+.+| ...|++++ |++++|++++.||
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEE--ecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 543 28999999999999988 458999999999999999999998 99999999 9999999999999
Q ss_pred c-EEEEe
Q 012679 426 T-LRFWN 431 (458)
Q Consensus 426 ~-i~iW~ 431 (458)
+ .+.|.
T Consensus 315 ~~~~~~~ 321 (342)
T 1yfq_A 315 TFKTNAA 321 (342)
T ss_dssp HHHHCSS
T ss_pred ccccccc
Confidence 8 44444
No 80
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=267.50 Aligned_cols=251 Identities=14% Similarity=0.237 Sum_probs=209.6
Q ss_pred EecCCCCCEEEEEEcCCCCEE-EEEec---CCeEEEEeCCCceeeEEecCCCcccEEEEEeC-----CCeEEEEeCCCcE
Q 012679 178 TVDDENGPVTSVNWAPDGRHI-AIGLN---NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-----NHILTTGGMDGLI 248 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~~g~~l-a~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-----~~~l~sg~~dg~i 248 (458)
.+.+|...|++++|+|++..+ ++|+. ||.|+|||+.+++.......+|...|.+++|+ +.+|++|+.||.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 446799999999999999655 55655 89999999999887655544499999999994 4899999999999
Q ss_pred EEEEccCCCeeEEEEcccccceEeEEE------cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc----ce
Q 012679 249 INNDVRVRDHIVETYRGHNQEVCGLKW------SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS----AV 318 (458)
Q Consensus 249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~------spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~----~v 318 (458)
++||+.+....+..+.+|...|.++.| +|++++|++|+.||.|++||++..... +..+..|.. .|
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP-----VANMEPVQGENKRDC 167 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC-----SEEECCCTTSCCCCE
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc-----ceeccccCCCCCCce
Confidence 999999887557888999999999954 789999999999999999999887621 445544443 78
Q ss_pred eEEE----ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcC---CCCeEEEEecCCCCcEEEEeCC
Q 012679 319 KAIA----WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK---NERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 319 ~~l~----~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
.+++ |+|++ .++++++ .|+.|++||+++++......+...+.+++|+| ++..+++ |..++.|++||+.
T Consensus 168 ~~~~~~~~~~~~~-~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 168 WTVAFGNAYNQEE-RVVCAGY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA--TSLEGKFHVFDMR 242 (357)
T ss_dssp EEEEEECCCC-CC-CEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE--EESTTEEEEEEEE
T ss_pred EEEEEEeccCCCC-CEEEEEc--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE--ECCCCeEEEEeCc
Confidence 8888 67765 4555555 89999999999999988888889999999999 8999888 4589999999998
Q ss_pred CceeeEEEe-----CCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCCcc
Q 012679 392 SMVKMAELS-----GHTSRVLFMAQSPDGC-TVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 392 ~~~~~~~~~-----~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
+++.+..+. +|...|++++|+|++. +|++++.||.|++||+......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 877665554 9999999999999998 8999999999999999876543
No 81
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.8e-32 Score=258.58 Aligned_cols=266 Identities=20% Similarity=0.332 Sum_probs=217.5
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCce-----eeEEecCCCcccEEEEEe-
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTANR-----QLRTLRGGHRSRVGSLAW- 234 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~l~~- 234 (458)
.++++...+.+.....++.+|.+.|++|+|+|+ +++||+|+.||+|+|||+.+.+ ....+.+ |...|.+++|
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s 95 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVIS 95 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEEC
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEEC
Confidence 456666656565556689999999999999997 6899999999999999987653 4556666 9999999999
Q ss_pred -CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc
Q 012679 235 -NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313 (458)
Q Consensus 235 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 313 (458)
++.+|++|+.|+.|++|+...... ......+...+..+.+++++++|++|+.|+.+++||...... .......
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~-----~~~~~~~ 169 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-----YTVQDES 169 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-----EEECSSS
T ss_pred CCCCEEEEEcccccceEEeecccce-eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-----EEEEecc
Confidence 478999999999999999987654 556667888899999999999999999999999999876533 2455678
Q ss_pred cccceeEEEecCCCCc-EEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 314 HTSAVKAIAWCPFQSN-LLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 314 h~~~v~~l~~~p~~~~-ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
|...+..++|++++.. ++++++ .|+.|++||+.+++++..+.. ...|.+++|+|++++|++ |..|+.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS--GGKDGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE--EeCCCeEEEEEec
Confidence 9999999999987654 566666 899999999999999888754 568999999999999998 5589999999999
Q ss_pred CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 392 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
+.+.+..+..+ ..|.+++|+|++.++ +++.|+.|++||+........
T Consensus 246 ~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~ 292 (340)
T 4aow_A 246 EGKHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDE 292 (340)
T ss_dssp TTEEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEE
T ss_pred cCceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEe
Confidence 99999988755 579999999988655 567799999999987655433
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.6e-33 Score=267.50 Aligned_cols=245 Identities=19% Similarity=0.249 Sum_probs=211.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCC
Q 012679 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVR 256 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~ 256 (458)
.|.++|++++|+|++++|++|+.||.|++||+.+++ .+..+.. |...|.+++|+ +.+|++++.||.|++||+++.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 478899999999999999999999999999999987 7888876 99999999994 789999999999999999876
Q ss_pred Cee-EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679 257 DHI-VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 257 ~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
... ...+..|...|.+++|+|++++|++|+.|+.|++||++....... .......|...|.+++|+|++. ++++++
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 161 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV--CKHIKKPIRSTVLSLDWHPNSV-LLAAGS 161 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE--EEEECTTCCSCEEEEEECTTSS-EEEEEE
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee--eeeeecccCCCeeEEEEcCCCC-EEEEEc
Confidence 532 234467999999999999999999999999999999987653111 1223357899999999999754 555655
Q ss_pred CCCCCeEEEEEC------------------CCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee
Q 012679 336 GGGDRCIKFWNT------------------HTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM 396 (458)
Q Consensus 336 g~~d~~i~lwd~------------------~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~ 396 (458)
.|+.|++||+ .+++++..+. +...+.+++|+|+++.+++ +..|+.|++||+.+++.+
T Consensus 162 --~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 162 --CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDSTVCLADADKKMAV 237 (372)
T ss_dssp --TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTTEEEEEEGGGTTEE
T ss_pred --CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcee
Confidence 8999999995 4677777774 4567999999999999988 448999999999999999
Q ss_pred EEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 397 AELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 397 ~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
..+..|...|.+++|+|++.+|++| .|+.|++|++..
T Consensus 238 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 238 ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999999999999999988877 999999999987
No 83
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=279.85 Aligned_cols=245 Identities=12% Similarity=0.230 Sum_probs=205.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-----------eeEEecCCCc------------ccEEEEEeC--C
Q 012679 182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-----------QLRTLRGGHR------------SRVGSLAWN--N 236 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-----------~~~~~~~~~~------------~~v~~l~~~--~ 236 (458)
+.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+ |. ..|.+++|+ +
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcCCC
Confidence 46889999999999999999999999999998877 4667776 88 889999995 3
Q ss_pred --CeEEEEeCCCcEEEEEccCCCee--------------------------------------EEE-EcccccceEeEEE
Q 012679 237 --HILTTGGMDGLIINNDVRVRDHI--------------------------------------VET-YRGHNQEVCGLKW 275 (458)
Q Consensus 237 --~~l~sg~~dg~i~vwd~~~~~~~--------------------------------------~~~-~~~h~~~v~~l~~ 275 (458)
..|++++.||.|++||+...... ... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 58999999999999998753321 112 3689999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeee-------eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679 276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLH-------RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH 348 (458)
Q Consensus 276 spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~ 348 (458)
+|++++|++| .|+.|++||++..... +. .+..|...|.+++|+|++..++++++ .|+.|++||++
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~ 257 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRS-----FNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMR 257 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEE-----EEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCce-----eeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECc
Confidence 9999999998 8999999999843220 22 36689999999999998767888877 89999999999
Q ss_pred CCCe----eEEEeCCC-------------CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ceeeEEEeCCCCc-----
Q 012679 349 TGAC----LNSVDTGS-------------QVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MVKMAELSGHTSR----- 405 (458)
Q Consensus 349 ~~~~----~~~~~~~~-------------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~~h~~~----- 405 (458)
+++. +..+..+. .|.+++|+|++++|+++ .. +.|++||+.+ ++.+..+.+|...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR--DY-LSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE--ES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe--eC-CeEEEEeCCCCccccceeecccccccccc
Confidence 9887 66776543 89999999999999984 35 9999999997 8888899888642
Q ss_pred ----------EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 406 ----------VLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 406 ----------V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
+..++|+|++++|++|+.||.|++||+.++...
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 334999999999999999999999999887654
No 84
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=262.57 Aligned_cols=283 Identities=13% Similarity=0.169 Sum_probs=224.4
Q ss_pred ccccceeeccCC-----CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679 141 DYYLNLLDWGSS-----NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 141 d~~~~~~~~~~~-----~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~ 215 (458)
...+++++|+++ .+++++.||.|++||+.+........+.+|...|++++|+|++++|++|+.||.|++||+.++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 118 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN 118 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence 346899999985 377778899999999998443334667789999999999999999999999999999999999
Q ss_pred eeeEEecCCCcccEEEEEe--C--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcE
Q 012679 216 RQLRTLRGGHRSRVGSLAW--N--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLL 291 (458)
Q Consensus 216 ~~~~~~~~~~~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i 291 (458)
+.+.... |...|.+++| + +.+|++++.||.|++||+++... +..+..+. .+.++.+. ...+++++.++.+
T Consensus 119 ~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i 192 (368)
T 3mmy_A 119 QAIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPE-RCYCADVI--YPMAVVATAERGL 192 (368)
T ss_dssp EEEEEEE--CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSS-CEEEEEEE--TTEEEEEEGGGCE
T ss_pred Cceeecc--ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCC-CceEEEec--CCeeEEEeCCCcE
Confidence 8777544 9999999999 4 57899999999999999997764 45555554 56666665 4588999999999
Q ss_pred EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC---cEEEEeCCCCCCeEEEEECCCC---CeeEEEeCCC-----
Q 012679 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS---NLLATGGGGGDRCIKFWNTHTG---ACLNSVDTGS----- 360 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~---~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~~~~----- 360 (458)
.+||++..... .......+...+.++++.+... ..+++++ .|+.|++||+... ..+..+..+.
T Consensus 193 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 193 IVYQLENQPSE----FRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EEEECSSSCEE----EEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred EEEEeccccch----hhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 99999875431 0111122333445555544322 2366665 8999999999987 4455555433
Q ss_pred --------CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 361 --------QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 361 --------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
.|.+++|+|++++|++ |..||.|++||+.+++.+..+.+|...|++++|+|+|++|++++.|+..+.|++
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLAT--VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ccccccccceEEEEEecCCCEEEE--EccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 6999999999999988 458999999999999999999999999999999999999999999987777776
Q ss_pred CCCCc
Q 012679 433 FGAPQ 437 (458)
Q Consensus 433 ~~~~~ 437 (458)
...+.
T Consensus 345 ~~~~~ 349 (368)
T 3mmy_A 345 YNPQK 349 (368)
T ss_dssp CCTTS
T ss_pred cCCCc
Confidence 65443
No 85
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=271.85 Aligned_cols=281 Identities=13% Similarity=0.101 Sum_probs=227.7
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCCCee-eEEEec----------------------------------------
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTS-ELVTVD---------------------------------------- 180 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~-~~~~~~---------------------------------------- 180 (458)
.++++.|++ +.+++++.++.|++||+.+|+.. .+..+.
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 466788877 55888889999999999998811 122222
Q ss_pred --------------CCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCC--CceeeEEecC-CCcccEEEEEeC--CCeEE
Q 012679 181 --------------DENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDST--ANRQLRTLRG-GHRSRVGSLAWN--NHILT 240 (458)
Q Consensus 181 --------------~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~--~~~~~~~~~~-~~~~~v~~l~~~--~~~l~ 240 (458)
+|.+.|++++|+|+|++| ++|+.||.|+|||+. +++.+..+.. .|...|.+++|+ +.+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 344479999999999996 889999999999999 8888887753 277899999994 68999
Q ss_pred EEeCCCcEEEEEccCCCe---eEEEEcccccceEeEEEcCC---CCEEEEEECCCcEEEEeCCCCCCCCcceeeee-ecc
Q 012679 241 TGGMDGLIINNDVRVRDH---IVETYRGHNQEVCGLKWSAS---GQQLASGGNDNLLHIWDRSMASSNSVTQWLHR-LEE 313 (458)
Q Consensus 241 sg~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~ 313 (458)
+|+.+|.|++|++..... ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+..+.. +.. +.+
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~------~~~~~~~ 239 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI------VDKWLFG 239 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC------EEEECCC
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce------eeeeecC
Confidence 999999999999987653 22366789999999999999 99999999999999999987765 555 568
Q ss_pred cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--------------------------CCCeEEEEE
Q 012679 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--------------------------GSQVCALLW 367 (458)
Q Consensus 314 h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------------------------~~~v~~~~~ 367 (458)
|...|.+++|+ + ..++++++ .|+.|++||+.+++++..+.. ...+..+.|
T Consensus 240 h~~~v~~~~~s-d-~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 240 HKHFVSSICCG-K-DYLLLSAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CSSCEEEEEEC-S-TTEEEEEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred CCCceEEEEEC-C-CCEEEEEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 99999999999 5 45566665 899999999999998888753 246889999
Q ss_pred cCCCCeEEEEecCCCCcEEEEeC--CCc---eeeEEEeCCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEecCCC
Q 012679 368 NKNERELLSSHGFTQNQLTLWKY--PSM---VKMAELSGHTSRVLFMAQSPDGCTVASAAA------DETLRFWNVFGA 435 (458)
Q Consensus 368 s~~~~~l~~~~g~~d~~i~iwd~--~~~---~~~~~~~~h~~~V~~l~~spdg~~l~s~s~------Dg~i~iW~~~~~ 435 (458)
+|++++++++++ .++.|+||++ .+. +.+..+.+| ..|.+++|+|++.++++++. +..|.+|.+...
T Consensus 316 ~~~~~~l~~~~~-~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 316 SKNLPFVAFFVE-ATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CSSSSEEEEEET-TCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred eCCCCEEEEEEC-CCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999999998642 6899999999 555 778888888 88999999996543333332 556899988654
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-34 Score=279.62 Aligned_cols=243 Identities=14% Similarity=0.160 Sum_probs=198.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc--eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC
Q 012679 182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN--RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD 257 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~ 257 (458)
+.++|++++|+|+|++||+|+.||.|+|||+.++ +.+..+.. |...|.+++|+ +.+|++|+.||.|++||+.++.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 5678999999999999999999999999999988 67777776 99999999995 6899999999999999998765
Q ss_pred --eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEe
Q 012679 258 --HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 258 --~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~ 334 (458)
.....+.+|...|.+++|+|++++|++|+.|+.|++||++..... .....+.. |...|.+++|+|++ .+++++
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~ 164 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW---WVSKHLKRPLRSTILSLDWHPNN-VLLAAG 164 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C---CCCEEECSSCCSCEEEEEECTTS-SEEEEE
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc---eeeeEeecccCCCeEEEEEcCCC-CEEEEE
Confidence 235667789999999999999999999999999999999887531 11455666 99999999999975 456666
Q ss_pred CCCCCCeEEEEECC------------------CCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee-
Q 012679 335 GGGGDRCIKFWNTH------------------TGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK- 395 (458)
Q Consensus 335 ~g~~d~~i~lwd~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~- 395 (458)
+ .|+.|++||+. .++++..+.+...|.+++|+|++++|++ |..|+.|++||+.+++.
T Consensus 165 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 165 C--ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAY--AGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp E--SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEE--EETTTEEC-CEECSTTSC
T ss_pred e--CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEE--EeCCCcEEEEECCCCCCc
Confidence 5 89999999985 3445555556678999999999999998 45899999999999887
Q ss_pred ---eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 396 ---MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 396 ---~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
+..+.+|...|.+++|+|+|++|++++.|+.+ +|+...
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 88899999999999999999999988766655 676653
No 87
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.1e-33 Score=266.40 Aligned_cols=242 Identities=22% Similarity=0.390 Sum_probs=199.4
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCce-
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANR- 216 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~- 216 (458)
..+++++|++ +.+++++.|++|+|||+.++....+..+.+|.+.|++++|++ ++++|++|+.||+|+|||+.+++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 3577888876 568888999999999998876555778899999999999986 48999999999999999998874
Q ss_pred -eeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCe--eEEEEcccccceEeEEEcCC-----------
Q 012679 217 -QLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDH--IVETYRGHNQEVCGLKWSAS----------- 278 (458)
Q Consensus 217 -~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~l~~spd----------- 278 (458)
.+..+.+ |...|.+++|+ +.+|++|+.||.|++||++.... ....+.+|...|.+++|+|+
T Consensus 94 ~~~~~~~~-h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 172 (316)
T 3bg1_A 94 EKSHEHAG-HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPS 172 (316)
T ss_dssp CEEEEECC-CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CC
T ss_pred eEEEEccC-CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccccc
Confidence 4556665 99999999995 46899999999999999987642 23456789999999999997
Q ss_pred ------CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC---CcEEEEeCCCCCCeEEEEECCC
Q 012679 279 ------GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ---SNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 279 ------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
+++|++|+.|+.|++||++.... ...+..+.+|...|.+++|+|++ ..+|++++ .|++|++||+.+
T Consensus 173 ~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s--~D~~v~iw~~~~ 247 (316)
T 3bg1_A 173 GQKPNYIKRFASGGCDNLIKLWKEEEDGQ---WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS--QDGRVFIWTCDD 247 (316)
T ss_dssp SCCCCCCCBEECCBTTSBCCEEEECTTSC---EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE--TTCEEEEEECSS
T ss_pred ccCccccceEEEecCCCeEEEEEeCCCCc---cceeeecccCCCceEEEEecCCCCCCCceEEEEc--CCCeEEEEEccC
Confidence 47899999999999999865421 12356788999999999999975 36788877 999999999986
Q ss_pred CC----eeEE-EeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 350 GA----CLNS-VDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 350 ~~----~~~~-~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
.. .... ..+...|.+++|+|+++.|+++ ..|+.|+||+..
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~--~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVS--GGDNKVTLWKES 292 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE--ESSSCEEEEEEC
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE--cCCCeEEEEEEC
Confidence 31 1112 2356789999999999999984 489999999975
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-34 Score=288.72 Aligned_cols=227 Identities=12% Similarity=0.105 Sum_probs=185.3
Q ss_pred EEEEecCCeEEEEeCCCceee----EEecCCCcccEEEEEeCC--------CeEEEEeCCCcEEEEEccCCCe-------
Q 012679 198 IAIGLNNCQVQLWDSTANRQL----RTLRGGHRSRVGSLAWNN--------HILTTGGMDGLIINNDVRVRDH------- 258 (458)
Q Consensus 198 la~g~~dg~v~iwd~~~~~~~----~~~~~~~~~~v~~l~~~~--------~~l~sg~~dg~i~vwd~~~~~~------- 258 (458)
|++++.||+|+|||+.+++.. ..+.. |...|.+++|++ .+|++|+.||+|++||+.....
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~-~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVH-SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEE-CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEe-cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 334557889999999877643 23444 788999999964 5999999999999999976532
Q ss_pred ---eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEE--EecCCCCcEEEE
Q 012679 259 ---IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI--AWCPFQSNLLAT 333 (458)
Q Consensus 259 ---~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l--~~~p~~~~ll~s 333 (458)
....+.+|...|++++|++++ .|++|+.||+|++||++++... ...+..|...|.++ +|+|++..+|++
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~-----~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVP-----SFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSC-----SEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCc-----eEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 124677899999999999864 8999999999999999876431 45678899999999 567765588888
Q ss_pred eCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEE
Q 012679 334 GGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA 410 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~ 410 (458)
++ .|++|++||+++++++..+..+ ..+.+++|+|++..+++ +..|+.|++||+.++..+..+.+|.+.|++++
T Consensus 329 ~S--~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s--~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 329 VA--VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY--SDGASSLRAVPSRAAFAVHPLVSRETTITAIG 404 (524)
T ss_dssp EE--TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE--ECSSSEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred ec--cCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE--eCCCCcEEEEECcccccceeeecCCCceEEEE
Confidence 87 9999999999998876655432 34789999999998887 44789999999999998888999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 411 QSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 411 ~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
|+|+|++|++|+.||+|++||+...
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSS
T ss_pred eCCCCCeEEEEECCCEEEEEechHh
Confidence 9999999999999999999998643
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=257.15 Aligned_cols=263 Identities=16% Similarity=0.235 Sum_probs=225.0
Q ss_pred CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCc
Q 012679 170 DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGL 247 (458)
Q Consensus 170 ~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~ 247 (458)
.|.......+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.. |...|.+++|+ +.+|++++.||.
T Consensus 19 ~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp SCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTTE
T ss_pred eccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 355566778899999999999999999999999999999999999999999987 99999999995 789999999999
Q ss_pred EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCCCCCCcc-----eeeeeeccccc-
Q 012679 248 IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMASSNSVT-----QWLHRLEEHTS- 316 (458)
Q Consensus 248 i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~~~~~~~-----~~~~~~~~h~~- 316 (458)
|++||+.++.. +..+. |...|.+++|+|++++|++++.+ +.|++||+......... .....+..|..
T Consensus 98 i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 98 IKLWDVSNGQC-VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEETTTCCE-EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEEEECCCCcE-EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 99999998775 44444 88899999999999999999999 99999998876542211 12344555666
Q ss_pred -ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-CCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679 317 -AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-GACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 317 -~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~ 393 (458)
.+.+++|+|++..+ ++++ .|+.|++||+.+ ++.+..+. +...|.+++|+|++.+|+++ ..|+.|++||+.++
T Consensus 176 ~~~~~~~~~~~~~~l-~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 176 DAATVAGWSTKGKYI-IAGH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS--SRDTNSFLVDVSTL 250 (369)
T ss_dssp CCEEEEEECGGGCEE-EEEE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTC
T ss_pred cceeEEEEcCCCCEE-EEEc--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe--cCCceEEEEECCCC
Confidence 89999999976554 5554 899999999999 67777776 46789999999999999884 48999999999999
Q ss_pred eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC--------------cEEEEecCCCCccccc
Q 012679 394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADE--------------TLRFWNVFGAPQVISK 441 (458)
Q Consensus 394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg--------------~i~iW~~~~~~~~~~~ 441 (458)
+.+..+. +...+..++|+|+++++++++.++ .+++||+.........
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 311 (369)
T 3zwl_B 251 QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV 311 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence 9998887 778899999999999999999998 8999999887765543
No 90
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=257.89 Aligned_cols=248 Identities=20% Similarity=0.303 Sum_probs=215.5
Q ss_pred eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEE
Q 012679 174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINN 251 (458)
Q Consensus 174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vw 251 (458)
.....+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+.. |...|.+++| ++.+|++|+.||.|++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 346788999999999999 9999999999999999999999998888887 9999999999 47899999999999999
Q ss_pred EccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCc
Q 012679 252 DVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN 329 (458)
Q Consensus 252 d~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 329 (458)
++.... .....+.+|...|.++.| ++++|++++.||.|++|| ... ....+..|...|.+++|.|....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~------~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS------LVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE------EEEEEECCSSCEEEEEEEETTTT
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc------EEEecccCCCceeEEEEccCCCC
Confidence 987653 346678899999999999 678999999999999999 222 26778889999999999995566
Q ss_pred EEEEeCCCCCCeEEEEECCCCCeeEEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE
Q 012679 330 LLATGGGGGDRCIKFWNTHTGACLNSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL 407 (458)
Q Consensus 330 ll~s~~g~~d~~i~lwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~ 407 (458)
++++++ .|+.|++|| .++....+. +...+.+++|+|++. +++ |..++.|++||+.+++.+..+.+|...|+
T Consensus 157 ~l~~~~--~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 157 KFLTAS--ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS--CSNDGLIKLVDMHTGDVLRTYEGHESFVY 229 (313)
T ss_dssp EEEEEE--TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEE--EETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEE--CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEE--ccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence 777766 899999999 455555554 567899999999998 665 55899999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 408 FMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
+++|+|++ .|++++.||.|++||+..+......
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence 99999999 5889999999999999888765543
No 91
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-32 Score=282.32 Aligned_cols=269 Identities=17% Similarity=0.300 Sum_probs=232.3
Q ss_pred cceeeccC----CCeEEEEcCCEEEEEECCCC------CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC----CeEEE
Q 012679 144 LNLLDWGS----SNVLAIALGSTVYLWDASDG------TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN----CQVQL 209 (458)
Q Consensus 144 ~~~~~~~~----~~~la~~~d~~v~iwd~~~~------~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d----g~v~i 209 (458)
+++++|++ ..+++++.||.|++||+.++ +...+..+..|...|.+++|+|++++|++++.+ +.|.+
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~ 146 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 146 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence 78899987 34778888999999999866 445577788899999999999999999999988 78999
Q ss_pred EeCCCceeeEEecCCCcccEEEEEeCC--C-eEEEEeCCCcEEEEEccCCCeeEEEEccccc---ceEeEEEcCC-CCEE
Q 012679 210 WDSTANRQLRTLRGGHRSRVGSLAWNN--H-ILTTGGMDGLIINNDVRVRDHIVETYRGHNQ---EVCGLKWSAS-GQQL 282 (458)
Q Consensus 210 wd~~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~---~v~~l~~spd-~~~l 282 (458)
|| .++.+..+.. |...|.+++|++ . .+++++.||.|++||+.+.. ....+.+|.. .|.+++|+|+ +++|
T Consensus 147 ~d--~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 147 WD--SGNSLGEVSG-HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp TT--TCCEEEECCS-CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred EE--CCCcceeeec-CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-eeeeecccCCCCceEEEEEECCCCCCEE
Confidence 98 6677788876 999999999953 3 89999999999999998665 4678889999 9999999999 9999
Q ss_pred EEEECCCcEEEEeCCCCCCCCcceeeeee-c---ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679 283 ASGGNDNLLHIWDRSMASSNSVTQWLHRL-E---EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358 (458)
Q Consensus 283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~ 358 (458)
++++.||.|++||+.++.. +..+ . .|...|.+++|+ ++ .++++++ .|+.|++||+.+++.+..+..
T Consensus 223 ~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~--~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 223 ITVGSDRKISCFDGKSGEF------LKYIEDDQEPVQGGIFALSWL-DS-QKFATVG--ADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp EEEETTCCEEEEETTTCCE------EEECCBTTBCCCSCEEEEEES-SS-SEEEEEE--TTSEEEEEETTTTEEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCCE------eEEecccccccCCceEEEEEc-CC-CEEEEEc--CCCcEEEEECCCCcEEEEEcC
Confidence 9999999999999988765 6666 5 899999999999 54 5555555 899999999999999998876
Q ss_pred C-----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 359 G-----SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 359 ~-----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
. ..+.++.|. ++..+++ |..++.|++||+.+++.+..+.+|...|++++| |+ |++++.||.|++|++.
T Consensus 293 ~~~~~~~~~~~~~~~-~~~~l~~--~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 293 DKQQLGNQQVGVVAT-GNGRIIS--LSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp CTTCGGGCEEEEEEE-ETTEEEE--EETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred CCCcccCceeEEEeC-CCCeEEE--EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 5 568888886 8888888 558999999999999999999999999999999 87 7778888888888765
No 92
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.3e-32 Score=303.60 Aligned_cols=284 Identities=20% Similarity=0.291 Sum_probs=242.6
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCcee
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANRQ 217 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~~ 217 (458)
..+.+++|++ ..+++++.|+.|++||+.+++. +..+.+|...|.+++|+| ++.++++|+.||.|++||+.+++.
T Consensus 658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 4678899987 3578888899999999999987 777889999999999999 566899999999999999999999
Q ss_pred eEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeE-----------------------------------
Q 012679 218 LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIV----------------------------------- 260 (458)
Q Consensus 218 ~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~----------------------------------- 260 (458)
+..+.+ |...|.+++|+ +.+|++|+.||.|++||++++....
T Consensus 736 ~~~~~~-h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 736 RNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEECC-CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred hheecC-CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 999987 99999999994 7899999999999999987653211
Q ss_pred -------------------EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEE
Q 012679 261 -------------------ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI 321 (458)
Q Consensus 261 -------------------~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 321 (458)
....+|...|.+++|+|+++++++++.||.|++||+.++.. +..+.+|...|.++
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~------~~~~~~h~~~v~~v 888 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK------VADCRGHLSWVHGV 888 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE------EEEECCCSSCEEEE
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce------eeecCCCccceEEE
Confidence 11126788999999999999999999999999999988765 77888999999999
Q ss_pred EecCCCCcEEEEeCCCCCCeEEEEECCCCCe-----------------------------e---------EEEeCCCCeE
Q 012679 322 AWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-----------------------------L---------NSVDTGSQVC 363 (458)
Q Consensus 322 ~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-----------------------------~---------~~~~~~~~v~ 363 (458)
+|+|++.. +++++ .|+.|++||+.++.. + ........+.
T Consensus 889 ~~spdg~~-l~s~s--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 889 MFSPDGSS-FLTAS--DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EECTTSSE-EEEEE--TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EECCCCCE-EEEEe--CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 99997655 45554 899999999653210 0 0112345789
Q ss_pred EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
+++|+|+++.+++ |..+|.|.+|++.+++.+..+.+|...|++++|+|+|++|++++.||.|++|++.++....
T Consensus 966 ~~~~sp~g~~l~~--g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 966 CCCLSPHLEYVAF--GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp EEEECTTSSEEEE--EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred EEEEcCCCCEEEE--EcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 9999999999998 5689999999999999999999999999999999999999999999999999998876543
No 93
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-32 Score=262.84 Aligned_cols=245 Identities=11% Similarity=0.121 Sum_probs=208.9
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecCCCcccEEEEEe--CCC-eEEEEeCCCcEEEEE
Q 012679 179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRGGHRSRVGSLAW--NNH-ILTTGGMDGLIINND 252 (458)
Q Consensus 179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~~~~~~v~~l~~--~~~-~l~sg~~dg~i~vwd 252 (458)
..+|.+.|++++|+|++++|++|+.||.|+|||+.+++ ....+.. |...|.+++| ++. +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 45799999999999999999999999999999998877 2344444 9999999999 478 999999999999999
Q ss_pred c-cCCCeeEEEEcc--cccceEeEEEcCCCCEEEEEECCCcEEEEeCCC---------CCCCCcceeeeeecccccceeE
Q 012679 253 V-RVRDHIVETYRG--HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM---------ASSNSVTQWLHRLEEHTSAVKA 320 (458)
Q Consensus 253 ~-~~~~~~~~~~~~--h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~h~~~v~~ 320 (458)
+ .... ...+.+ |...|.+++|+| +++|++++.|+.|++||++. ... +..+. |...|.+
T Consensus 86 ~~~~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~-~~~~v~~ 155 (342)
T 1yfq_A 86 LIGSPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN------SNNTK-VKNKIFT 155 (342)
T ss_dssp SSSSSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC------SSSSS-SCCCEEE
T ss_pred eccCCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe------eeEEe-eCCceEE
Confidence 9 7665 367778 999999999999 99999999999999999886 443 34444 8899999
Q ss_pred EEecCCCCcEEEEeCCCCCCeEEEEECCC-CCee---EEEeCCCCeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCc--
Q 012679 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHT-GACL---NSVDTGSQVCALLWNK-NERELLSSHGFTQNQLTLWKYPSM-- 393 (458)
Q Consensus 321 l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~-- 393 (458)
++|+|++ +++++ .|+.|++||+++ +... ....+...+.+++|+| +++.+++ |..+|.|++|++...
T Consensus 156 ~~~~~~~---l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~--~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 156 MDTNSSR---LIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp EEECSSE---EEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCC
T ss_pred EEecCCc---EEEEe--CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE--EecCCcEEEEEEcCCCc
Confidence 9999965 55555 899999999998 5532 2334567899999999 9999988 448999999999887
Q ss_pred ----eeeEEEeCCCC---------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 394 ----VKMAELSGHTS---------RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 394 ----~~~~~~~~h~~---------~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
+....+.+|.. .|.+++|+|++++|++++.||.|++||+..+..+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 289 (342)
T 1yfq_A 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence 77888888865 9999999999999999999999999999887765543
No 94
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-32 Score=284.44 Aligned_cols=253 Identities=18% Similarity=0.278 Sum_probs=213.3
Q ss_pred EEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCc-----eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCc
Q 012679 176 LVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTAN-----RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGL 247 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~-----~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~ 247 (458)
...+.+|.+.|++|+|+|+ +++|++|+.||+|+|||+.+. .....+.+ |...|.+++|+ +.+|++|+.||.
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCCEEEEEeCCCc
Confidence 3467899999999999986 479999999999999998763 34456666 99999999994 789999999999
Q ss_pred EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679 248 IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 248 i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 327 (458)
|++||+.++.. ...+.+|...|.+++|+|++++|++|+.|++|++||...... ........+|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 454 LRLWDLAAGVS-TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK---YTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EEECSSTTSCSSCEEEEEECSCS
T ss_pred EEEEECCCCcc-eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc---eeeccCCCCCCCcEEEEEEeCCC
Confidence 99999987654 678889999999999999999999999999999999764322 01111235788999999999976
Q ss_pred C-cEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc
Q 012679 328 S-NLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR 405 (458)
Q Consensus 328 ~-~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~ 405 (458)
. .++++++ .|+.|++||++++++...+. +...|.+++|+|+++.+++ |..|+.|++||+.+++.+..+.. ...
T Consensus 530 ~~~~l~s~s--~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s--g~~Dg~i~iwd~~~~~~~~~~~~-~~~ 604 (694)
T 3dm0_A 530 LQPTIVSAS--WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS--GGKDGVVLLWDLAEGKKLYSLEA-NSV 604 (694)
T ss_dssp SSCEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSBCEEEETTTTEEEECCBC-SSC
T ss_pred CcceEEEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE--EeCCCeEEEEECCCCceEEEecC-CCc
Confidence 3 5777776 99999999999999988886 4568999999999999998 55899999999999999888764 467
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679 406 VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 406 V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
|.+++|+|++.+|++++ |+.|++||+.....+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE 637 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence 99999999998887665 5669999998876544
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-33 Score=274.95 Aligned_cols=259 Identities=15% Similarity=0.196 Sum_probs=209.4
Q ss_pred EECCCCCeeeEEEe-cCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC---ce---eeEEecCCCcccEEEEEeC--
Q 012679 166 WDASDGTTSELVTV-DDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA---NR---QLRTLRGGHRSRVGSLAWN-- 235 (458)
Q Consensus 166 wd~~~~~~~~~~~~-~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~---~~---~~~~~~~~~~~~v~~l~~~-- 235 (458)
|+. +++. +..+ .+|.+.|++++|+| ++++||+|+.||.|+|||+.+ +. ....+ .|...|.+++|+
T Consensus 48 w~~-~g~~--~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~ 122 (437)
T 3gre_A 48 GNL-RGKL--IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPN 122 (437)
T ss_dssp GGC-CCCE--EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTT
T ss_pred ccc-cceE--EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCC
Confidence 773 3444 6677 88999999999999 999999999999999999876 43 23333 299999999994
Q ss_pred CCeEEEEeCCCcEEEEEcc---CCCeeEEEEc----------c--cccceEeEE--EcCCCCEEEEEECCCcEEEEeCCC
Q 012679 236 NHILTTGGMDGLIINNDVR---VRDHIVETYR----------G--HNQEVCGLK--WSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 236 ~~~l~sg~~dg~i~vwd~~---~~~~~~~~~~----------~--h~~~v~~l~--~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
+.+|++|+.||.|++||+. .+.. ..... . +...+.++. +++++.+|++|+.||.|++||++.
T Consensus 123 ~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 123 FDAFAVSSKDGQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEeCCCEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 6899999999999999995 3322 22221 1 455667776 668999999999999999999988
Q ss_pred CCCCCcceeeeeecc--cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--CCCCeEEEEEcC----C
Q 012679 299 ASSNSVTQWLHRLEE--HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--TGSQVCALLWNK----N 370 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--~~~~v~~~~~s~----~ 370 (458)
... +..+.. |...|.+++|+|+ ..++++++ .|+.|++||+++++++..+. +...|.+++|+| +
T Consensus 202 ~~~------~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 202 LER------LQIIENSPRHGAVSSICIDEE-CCVLILGT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp CCE------EEEEECCGGGCCEEEEEECTT-SCEEEEEE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred Cee------eEEEccCCCCCceEEEEECCC-CCEEEEEc--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence 766 677777 8999999999997 55566665 89999999999999998874 455799997765 4
Q ss_pred CCeEEEEecCCCCcEEEEeCCCceeeEEEeCC--------------------------CCcEEEEEEcCCCCEEEEEeCC
Q 012679 371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGH--------------------------TSRVLFMAQSPDGCTVASAAAD 424 (458)
Q Consensus 371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h--------------------------~~~V~~l~~spdg~~l~s~s~D 424 (458)
+.++++ |..|+.|++||+.+++.+..+.+| ...|++++|+ ++++|++|+.|
T Consensus 273 ~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d 349 (437)
T 3gre_A 273 SVIVVG--GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT 349 (437)
T ss_dssp EEEEEE--ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG
T ss_pred ccEEEE--EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC
Confidence 667776 668999999999999988887754 4558888999 77899999999
Q ss_pred CcEEEEecCCCCcccccC
Q 012679 425 ETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 425 g~i~iW~~~~~~~~~~~~ 442 (458)
|.|++||+.+++......
T Consensus 350 ~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 350 SSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp TEEEEEETTCGGGCEEEE
T ss_pred CeEEEEECCCcccceEEe
Confidence 999999999887665443
No 96
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-32 Score=290.94 Aligned_cols=282 Identities=13% Similarity=0.128 Sum_probs=208.1
Q ss_pred cccceeeccCC---CeEEEEcCCEEEEEECCCCCeeeEEEecCC------------------CCCEEEEEEcCCCCEEEE
Q 012679 142 YYLNLLDWGSS---NVLAIALGSTVYLWDASDGTTSELVTVDDE------------------NGPVTSVNWAPDGRHIAI 200 (458)
Q Consensus 142 ~~~~~~~~~~~---~~la~~~d~~v~iwd~~~~~~~~~~~~~~h------------------~~~V~~v~~s~~g~~la~ 200 (458)
..+.+++|++. .+++++.|+.| +||+.+++. +..+..| ...|++++|+|+|++||+
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence 35888999984 57777889999 999998876 4444443 578999999999999999
Q ss_pred EecCCeEEEEeCCCceeeEE--ec---C------------CCcccEEEEEe----CC---CeEEEEeCC-----CcEEEE
Q 012679 201 GLNNCQVQLWDSTANRQLRT--LR---G------------GHRSRVGSLAW----NN---HILTTGGMD-----GLIINN 251 (458)
Q Consensus 201 g~~dg~v~iwd~~~~~~~~~--~~---~------------~~~~~v~~l~~----~~---~~l~sg~~d-----g~i~vw 251 (458)
|+.||.|++||+.+++.+.. +. . .|...|.+++| ++ .+|++|+.+ ..+.+|
T Consensus 229 gs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~ 308 (902)
T 2oaj_A 229 IHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI 308 (902)
T ss_dssp EETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred EECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEE
Confidence 99999999999999887653 21 1 13457888888 22 356666443 144444
Q ss_pred E-----------------------------------------------------------------------ccCCCeeE
Q 012679 252 D-----------------------------------------------------------------------VRVRDHIV 260 (458)
Q Consensus 252 d-----------------------------------------------------------------------~~~~~~~~ 260 (458)
+ +.++....
T Consensus 309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~ 388 (902)
T 2oaj_A 309 DLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTD 388 (902)
T ss_dssp EEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEEC
T ss_pred ecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccc
Confidence 4 32221100
Q ss_pred E----------------------------------------EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679 261 E----------------------------------------TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 261 ~----------------------------------------~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
. .+.+|...+.+++|+|++++|++|+.|++|++||+..+.
T Consensus 389 ~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~ 468 (902)
T 2oaj_A 389 KASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD 468 (902)
T ss_dssp CGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT
T ss_pred ccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc
Confidence 0 012233334445667899999999999999999998874
Q ss_pred CCCcceeeeeec-----ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC------------------------
Q 012679 301 SNSVTQWLHRLE-----EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA------------------------ 351 (458)
Q Consensus 301 ~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~------------------------ 351 (458)
..........+. +|...|.+++|+|++. +||+|+ .|++|++||+.+++
T Consensus 469 ~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs--~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (902)
T 2oaj_A 469 IQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSI--ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN 545 (902)
T ss_dssp TTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEE--TTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred ccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEe--cCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence 321111111122 7889999999999765 566666 89999999998763
Q ss_pred ---------------------eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE-----EEe-CCC
Q 012679 352 ---------------------CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA-----ELS-GHT 403 (458)
Q Consensus 352 ---------------------~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~-----~~~-~h~ 403 (458)
++..+. +...|++++|+|+| +|++ |+.|+.|+|||+.+...+. .+. +|.
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAs--gs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~ 622 (902)
T 2oaj_A 546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGI--AYAAGSLMLIDRRGPAIIYMENIREISGAQS 622 (902)
T ss_dssp SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEE--EETTSEEEEEETTTTEEEEEEEGGGTCSSCC
T ss_pred CccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEE--EeCCCcEEEEECCCCeEEEEeehhHhccccc
Confidence 344554 56789999999999 7777 5689999999998877654 233 899
Q ss_pred CcEEEEEEc-----CCC---CEEEEEeCCCcEEEEec
Q 012679 404 SRVLFMAQS-----PDG---CTVASAAADETLRFWNV 432 (458)
Q Consensus 404 ~~V~~l~~s-----pdg---~~l~s~s~Dg~i~iW~~ 432 (458)
+.|++++|+ ||| ++|++|+.|++|++||+
T Consensus 623 ~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 623 ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 999999999 885 89999999999999999
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-32 Score=272.47 Aligned_cols=253 Identities=17% Similarity=0.200 Sum_probs=204.9
Q ss_pred EecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEec-CCCcccEEEEEeC---CCeEEEEeCCCcEEEEE
Q 012679 178 TVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLR-GGHRSRVGSLAWN---NHILTTGGMDGLIINND 252 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd 252 (458)
....|...|+||+|+| ++++||+|+.||.|+|||+.+++....+. .+|...|.+|+|+ +.+|++|+.||+|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3456788999999999 67799999999999999998876544433 2499999999995 57999999999999999
Q ss_pred ccCCCeeEEEEc--ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679 253 VRVRDHIVETYR--GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330 (458)
Q Consensus 253 ~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 330 (458)
+++... ..... .+...+++++|+|++++|++|+.||.|++||++... +..+.+|...|.+++|+|++..+
T Consensus 194 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-------~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 194 FKGNIL-RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-------LWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp TTSCEE-EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-------CCCSBCCSSCEEEEEECTTCSSE
T ss_pred ccCCce-eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-------eEEEecccceEEeeeecCCCceE
Confidence 986542 22222 344568899999999999999999999999986532 56778999999999999999999
Q ss_pred EEEeCCCCCCeEEEEECCCCCeeEEE----eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC--
Q 012679 331 LATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS-- 404 (458)
Q Consensus 331 l~s~~g~~d~~i~lwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~-- 404 (458)
+++++ .|+.|++||+++++....+ .+...|.+++|+|++.+|++ |..|+.|+|||+.++.....+.+|..
T Consensus 266 ~~s~s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s--~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 266 LATAS--VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT--TDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp EEEEE--TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE--EESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred EEEec--CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE--EcCCCEEEEEECCCCccceEEecccccc
Confidence 99987 9999999999987654433 45678999999999999998 45899999999999988888776653
Q ss_pred ----cEEEEEEcCCCCEEEEEe------------CCCcEEEEecCCCCcccccC
Q 012679 405 ----RVLFMAQSPDGCTVASAA------------ADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 405 ----~V~~l~~spdg~~l~s~s------------~Dg~i~iW~~~~~~~~~~~~ 442 (458)
.+....|+|++.++++++ .++.|++||+.++.......
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~ 395 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY 395 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 234567788777777664 23579999998887665543
No 98
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-32 Score=262.36 Aligned_cols=247 Identities=19% Similarity=0.317 Sum_probs=208.2
Q ss_pred ecCCCCCEEEEEEcCC----CCEEEEEecCCeEEEEeCCCceeeEEecC----CCcccEEEEEeC------CCeEEEEeC
Q 012679 179 VDDENGPVTSVNWAPD----GRHIAIGLNNCQVQLWDSTANRQLRTLRG----GHRSRVGSLAWN------NHILTTGGM 244 (458)
Q Consensus 179 ~~~h~~~V~~v~~s~~----g~~la~g~~dg~v~iwd~~~~~~~~~~~~----~~~~~v~~l~~~------~~~l~sg~~ 244 (458)
..+|.+.|++++|+|+ ...+++++.++.|++||+.+++.+..+.. .|...|.+++|+ +.+|++|+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999984 55677777788999999998887766653 256789999994 358999999
Q ss_pred CCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee---cccccceeE
Q 012679 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL---EEHTSAVKA 320 (458)
Q Consensus 245 dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---~~h~~~v~~ 320 (458)
||.|++||+.++.. +..+.+|...|.+++|+| ++++|++|+.||.|++||++.+.. +..+ ..|...|.+
T Consensus 94 dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~v~~ 166 (366)
T 3k26_A 94 RGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL------VAIFGGVEGHRDEVLS 166 (366)
T ss_dssp TCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE------EEEECSTTSCSSCEEE
T ss_pred CCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE------EEEecccccccCceeE
Confidence 99999999987764 677889999999999999 999999999999999999987755 5555 689999999
Q ss_pred EEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-----------------------------CCCCeEEEEEcCCC
Q 012679 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-----------------------------TGSQVCALLWNKNE 371 (458)
Q Consensus 321 l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-----------------------------~~~~v~~~~~s~~~ 371 (458)
++|+|++. ++++++ .|+.|++||+++++.+..+. +...|.++.|+ +
T Consensus 167 ~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 241 (366)
T 3k26_A 167 ADYDLLGE-KIMSCG--MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G 241 (366)
T ss_dssp EEECTTSS-EEEEEE--TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred EEECCCCC-EEEEec--CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence 99999765 455555 89999999999876554332 56789999999 6
Q ss_pred CeEEEEecCCCCcEEEEeCCCce--------------eeEEEeCCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEecCCC
Q 012679 372 RELLSSHGFTQNQLTLWKYPSMV--------------KMAELSGHTSRVLFMAQSPD--GCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd~~~~~--------------~~~~~~~h~~~V~~l~~spd--g~~l~s~s~Dg~i~iW~~~~~ 435 (458)
+.+++ +..|+.|++||+.++. .+..+.+|...|++++|+|+ +++|++|+.||.|++||+..+
T Consensus 242 ~~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 242 DLILS--KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp TEEEE--ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred CEEEE--EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 67777 5589999999998764 37888999999999999999 999999999999999999887
Q ss_pred Cccc
Q 012679 436 PQVI 439 (458)
Q Consensus 436 ~~~~ 439 (458)
....
T Consensus 320 ~~~~ 323 (366)
T 3k26_A 320 DPHK 323 (366)
T ss_dssp SGGG
T ss_pred CCcc
Confidence 6543
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=288.47 Aligned_cols=251 Identities=17% Similarity=0.310 Sum_probs=210.0
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC--CceeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEE
Q 012679 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST--ANRQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIIN 250 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~v 250 (458)
..+.+|.+.|++++|+|+|++|++|+.||.|+|||+. +++.+..+.+ |...|.+++|+ +.+|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 4567899999999999999999999999999999998 5567777776 99999999994 789999999999999
Q ss_pred EEccCCC-eeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC-
Q 012679 251 NDVRVRD-HIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF- 326 (458)
Q Consensus 251 wd~~~~~-~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~- 326 (458)
||+.++. .....+.+|...|.+++|+|+ +++|++|+.||.|++||++...... ...+..|...|.+++|+|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~----~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS----PIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC----CEEEECCSSCEEEEEECCCC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc----eeEeecCCCceEEEEecCcc
Confidence 9998765 245677889999999999999 9999999999999999998874321 4556789999999999995
Q ss_pred -----------CCcEEEEeCCCCCCeEEEEECCCCC----eeEEEe-CCCCeEEEEEcCC---CCeEEEEecCCCCcEEE
Q 012679 327 -----------QSNLLATGGGGGDRCIKFWNTHTGA----CLNSVD-TGSQVCALLWNKN---ERELLSSHGFTQNQLTL 387 (458)
Q Consensus 327 -----------~~~ll~s~~g~~d~~i~lwd~~~~~----~~~~~~-~~~~v~~~~~s~~---~~~l~~~~g~~d~~i~i 387 (458)
...++++++ .||.|++||++++. +...+. +...|.+++|+|+ +..+++ |..||.|++
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s--~s~Dg~I~i 233 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCII 233 (753)
T ss_dssp ---------CGGGCCEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EESSSCEEE
T ss_pred cccccccccCCCCCEEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE--EecCCEEEE
Confidence 245566665 89999999998874 344443 4678999999999 788877 458999999
Q ss_pred EeCCCce-----eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 388 WKYPSMV-----KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 388 wd~~~~~-----~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
||+.++. .+....+|...|++++|+|+|.+|++|+.||.|++|++....
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9998864 333445688999999999999999999999999999998544
No 100
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.2e-30 Score=252.55 Aligned_cols=269 Identities=14% Similarity=0.149 Sum_probs=222.2
Q ss_pred eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679 154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL 232 (458)
Q Consensus 154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 232 (458)
+++++.++.|++||+.+++. +..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+.. ...+.++
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~--~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~v~~~ 79 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKV--TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGV 79 (391)
T ss_dssp EEEETTTTEEEEEETTTTEE--EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEE
T ss_pred EEEcCCCCEEEEEECCCCeE--EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--CCCccce
Confidence 55666789999999999876 45555554 59999999999987 5666899999999999999988884 3389999
Q ss_pred EeC--CCeE-EEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceee
Q 012679 233 AWN--NHIL-TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWL 308 (458)
Q Consensus 233 ~~~--~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~ 308 (458)
+|+ +..| ++++.++.|++||+.+++. +..+.. ...+.+++|+|++++| ++++.|+.|++||+.+++. +
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~------~ 151 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV------I 151 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE------E
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE------E
Confidence 995 5656 4556779999999987764 444444 4568999999999987 6788899999999987654 5
Q ss_pred eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC-CCCcEEE
Q 012679 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF-TQNQLTL 387 (458)
Q Consensus 309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~i 387 (458)
..+..+ ..+.+++|+|++..++++++ .|+.|++||+++++++..+.....+.+++|+|+++.++++... .++.|++
T Consensus 152 ~~~~~~-~~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 152 NTVSVG-RSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp EEEECC-SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred EEEecC-CCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 555544 45689999999888878876 8999999999999999999888889999999999999886421 5899999
Q ss_pred EeCCCceeeEEEeCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCCccc
Q 012679 388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+..++...
T Consensus 229 ~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA 280 (391)
T ss_dssp EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence 9999999999888765 47899999999987 677889999999998765543
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.8e-31 Score=260.33 Aligned_cols=241 Identities=23% Similarity=0.430 Sum_probs=210.5
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccC
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRV 255 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 255 (458)
+....+|...|+++++ ++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|++.+|++|+.||.|++||+.+
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 3444567788999887 789999999999999999999999999987 9999999999999999999999999999998
Q ss_pred CCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679 256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 256 ~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
+.. +..+.+|...|.+++|+ +.+|++|+.||.|++||+...... .....+.+|...|.+++|. ...+++++
T Consensus 203 ~~~-~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~---~~~l~s~~ 273 (435)
T 1p22_A 203 GEM-LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI---TLRRVLVGHRAAVNVVDFD---DKYIVSAS 273 (435)
T ss_dssp CCE-EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC---EEEEEECCCSSCEEEEEEE---TTEEEEEE
T ss_pred CcE-EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc---eeeeEecCCCCcEEEEEeC---CCEEEEEe
Confidence 764 67888999999999996 459999999999999999877652 1236678899999999993 35666665
Q ss_pred CCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC
Q 012679 336 GGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd 414 (458)
.|+.|++||+++++++..+.. ...+.++.|+ +..+++ |..||.|++||+.+++.+..+.+|...|.+++| +
T Consensus 274 --~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~ 345 (435)
T 1p22_A 274 --GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D 345 (435)
T ss_dssp --TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred --CCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEE--EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence 899999999999999998874 5678899884 667777 558999999999999999999999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEecCCCC
Q 012679 415 GCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 415 g~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
+.+|++|+.||.|++||+....
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHT
T ss_pred CCEEEEEeCCCcEEEEECCCCC
Confidence 8899999999999999997654
No 102
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3e-30 Score=255.05 Aligned_cols=278 Identities=11% Similarity=0.056 Sum_probs=230.7
Q ss_pred cceeeccCCC-eEEEE-cCCEEEEEECCCCCeeeEE---EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 144 LNLLDWGSSN-VLAIA-LGSTVYLWDASDGTTSELV---TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 144 ~~~~~~~~~~-~la~~-~d~~v~iwd~~~~~~~~~~---~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
+.++.|+++. +++++ .++.|++||+.+++..... .+.+|...|.+++|++++.++++++.||.|++||+.+++.+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 4467787643 44444 4678999999998874322 34578889999999999999999999999999999999998
Q ss_pred EEecCCCcccEEEEEeC--CCeE-EEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE--------C
Q 012679 219 RTLRGGHRSRVGSLAWN--NHIL-TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG--------N 287 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~--------~ 287 (458)
..+.. |...+.+++|+ +..+ ++++.++.|++||++++.. +..+.. ...+.+++|+|++++|++++ .
T Consensus 205 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 205 ATVDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccC
Confidence 88886 88999999994 5656 5566899999999987654 445544 45699999999999999988 5
Q ss_pred CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEE
Q 012679 288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLW 367 (458)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~ 367 (458)
|+.|++||+.++.. +.. ..|...+.+++|+|++..++++++ .|+.|++||+.+++.+..+.....+.+++|
T Consensus 282 dg~i~~~d~~~~~~------~~~-~~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 352 (433)
T 3bws_A 282 GGRLGIYSMDKEKL------IDT-IGPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIAL 352 (433)
T ss_dssp CEEEEEEETTTTEE------EEE-EEEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred CCeEEEEECCCCcE------Eee-ccCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEE
Confidence 88999999987653 333 356678899999999888888876 899999999999999999988889999999
Q ss_pred cCCCCeEEEEecCC-------------CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEecC
Q 012679 368 NKNERELLSSHGFT-------------QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA-DETLRFWNVF 433 (458)
Q Consensus 368 s~~~~~l~~~~g~~-------------d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iW~~~ 433 (458)
+|+++.++++.... ||.|++||..+++.+..+.. ...+.+++|+|+|++|++++. |+.|++|++.
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99999888865322 57999999999999988876 457899999999999998875 9999999986
Q ss_pred C
Q 012679 434 G 434 (458)
Q Consensus 434 ~ 434 (458)
+
T Consensus 432 ~ 432 (433)
T 3bws_A 432 G 432 (433)
T ss_dssp T
T ss_pred C
Confidence 3
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-31 Score=255.69 Aligned_cols=245 Identities=21% Similarity=0.351 Sum_probs=205.0
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEeCCCce-
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANR- 216 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~--g~~la~g~~dg~v~iwd~~~~~- 216 (458)
..+.+++|++ ..+++++.||.|+|||+..+....+..+.+|...|++++|+++ +++|++|+.||.|++||+.+++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 91 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence 3578889987 3477777899999999986666667888999999999999987 9999999999999999999987
Q ss_pred -eeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcC-------------
Q 012679 217 -QLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSA------------- 277 (458)
Q Consensus 217 -~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~sp------------- 277 (458)
.+..+.. |...|.+++|+ +.+|++++.||.|++||++.... ....+.+|...|.+++|+|
T Consensus 92 ~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 170 (379)
T 3jrp_A 92 SQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 170 (379)
T ss_dssp EEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------C
T ss_pred eEeeeecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCC
Confidence 6666666 99999999995 67999999999999999987742 3456678999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC--CcEEEEeCCCCCCeEEEEECCCCCe---
Q 012679 278 SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ--SNLLATGGGGGDRCIKFWNTHTGAC--- 352 (458)
Q Consensus 278 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~ll~s~~g~~d~~i~lwd~~~~~~--- 352 (458)
++.+|++|+.||.|++||++..... ......+..|...|.+++|+|++ ..++++++ .|+.|++||+.++..
T Consensus 171 ~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 171 ESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp TTCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCE
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCeEEEEe--CCCEEEEEeCCCCCccce
Confidence 6999999999999999999876531 22356778899999999999985 66777776 899999999998742
Q ss_pred eEEE---eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679 353 LNSV---DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 353 ~~~~---~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~ 393 (458)
.... .+...+.+++|+|++++|+++ ..||.|++|++...
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLALS--GGDNKVTLWKENLE 288 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEEE--ESSSSEEEEEEEET
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEEe--cCCCcEEEEeCCCC
Confidence 2222 245679999999999999985 47999999998743
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-31 Score=254.22 Aligned_cols=260 Identities=11% Similarity=0.051 Sum_probs=205.8
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC---------CceeeEEe
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST---------ANRQLRTL 221 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~---------~~~~~~~~ 221 (458)
+..+++++.||.|++||+.+++.. ..+. ...|.++.|+|+ +++|+.|+.|++|+.. +++.+..+
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~--~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTI--TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCE--EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCcEEEEECCCCcEE--EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 366899999999999999998873 3333 456888889988 9999999999999655 55556666
Q ss_pred cCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEE-cccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679 222 RGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETY-RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 222 ~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~ 296 (458)
..+|...|.+++|+ +.+|++|+.||.|++||++++.. .... ..|...|.+++|+|++.+|++|+.||.|++||+
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 65588899999995 47899999999999999998776 3434 456668999999999999999999999999999
Q ss_pred CCCCCCCcceee-eeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC----CCCe--EEEEEc
Q 012679 297 SMASSNSVTQWL-HRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT----GSQV--CALLWN 368 (458)
Q Consensus 297 ~~~~~~~~~~~~-~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~----~~~v--~~~~~s 368 (458)
+++.. + ..+.. |...|.+++|+|++. ++++++ |+.|++||+++++++..+.. ...+ .+++|+
T Consensus 200 ~~~~~------~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 200 SSPDQ------ASSRFPVDEEAKIKEVKFADNGY-WMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp SCTTS------CCEECCCCTTSCEEEEEECTTSS-EEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred CCCCC------CccEEeccCCCCEEEEEEeCCCC-EEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence 98876 4 56677 999999999999755 455553 44999999999887655432 1223 469999
Q ss_pred CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC---CCCEEEEEeCCCcEEEEecC
Q 012679 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP---DGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp---dg~~l~s~s~Dg~i~iW~~~ 433 (458)
|++++++++++ .++.|+||++......... .++..++|++ ++..+++++.||.+.++-..
T Consensus 270 ~~g~~l~~~s~-~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 270 DSGKNMIAYSN-ESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TTSSEEEEEET-TTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred CCCCEEEEecC-CCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 99999998542 3889999999766554433 5677888998 88999999999999988544
No 105
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=3.3e-30 Score=252.59 Aligned_cols=248 Identities=21% Similarity=0.385 Sum_probs=209.6
Q ss_pred EEEecCCCCC--EEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEE
Q 012679 176 LVTVDDENGP--VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINN 251 (458)
Q Consensus 176 ~~~~~~h~~~--V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vw 251 (458)
+....+|... +.+++|++ ..+++++.||.|++||+.+++....+...|...|.+++| ++.+|++|+.||.|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 4444555544 55677765 457888899999999999999888888768999999999 46899999999999999
Q ss_pred EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll 331 (458)
|+.++.. +..+.+|...|.+++| ++++|++|+.||.|++||++.... .+..+..|...|.+++|+|++ .++
T Consensus 162 d~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~-~~l 232 (401)
T 4aez_A 162 DVESQTK-LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH-----QIGTLQGHSSEVCGLAWRSDG-LQL 232 (401)
T ss_dssp ETTTCCE-EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECTTS-SEE
T ss_pred ECcCCeE-EEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc-----eeeEEcCCCCCeeEEEEcCCC-CEE
Confidence 9987764 6788899999999999 567999999999999999985433 267788899999999999965 556
Q ss_pred EEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEe-cCCCCcEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679 332 ATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSH-GFTQNQLTLWKYPSMVKMAELSGHTSRVLFM 409 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l 409 (458)
++++ .|+.|++||+++++++..+. +...|.+++|+|++..+++++ |..|+.|++||+.+++.+..+. |...|.++
T Consensus 233 ~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~ 309 (401)
T 4aez_A 233 ASGG--NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL 309 (401)
T ss_dssp EEEE--TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred EEEe--CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE
Confidence 6665 89999999999999988875 567899999999887777654 4579999999999999998886 66789999
Q ss_pred EEcCCCCEEEEEe--CCCcEEEEecCCCCc
Q 012679 410 AQSPDGCTVASAA--ADETLRFWNVFGAPQ 437 (458)
Q Consensus 410 ~~spdg~~l~s~s--~Dg~i~iW~~~~~~~ 437 (458)
+|+|++.+|++++ .||.|++|++..+..
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~ 339 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGL 339 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence 9999999999954 899999999987543
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=4.9e-30 Score=247.29 Aligned_cols=279 Identities=11% Similarity=0.100 Sum_probs=213.5
Q ss_pred cccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeE
Q 012679 142 YYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 142 ~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~ 219 (458)
-.+++++|++ +.+++++.+..+++||+.+++. ...... ..+..+++.++++.+ ++|+.|+.|+|||+.+++.+.
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~ 95 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAH--IMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVS 95 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSEEEEEEETTEEE--EEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCEEEEEecCCcce--eeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEE
Confidence 3578899988 5688888888899999887654 333222 247888999988887 457788999999999999999
Q ss_pred EecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEE--EECCCcEEEEeCC
Q 012679 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLAS--GGNDNLLHIWDRS 297 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s--g~~dg~i~iwd~~ 297 (458)
.+. +...|.+++++++.++++. ++.|++||+.+....+..+.. ....+++++ .++++ |+.||.|++||+.
T Consensus 96 ~~~--~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~ 167 (355)
T 3vu4_A 96 RIK--VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQ 167 (355)
T ss_dssp EEE--CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECC
T ss_pred EEE--CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECC
Confidence 887 7779999999988777764 789999999877223333333 344456666 66766 5789999999998
Q ss_pred CCCCCC---------ccee-eeeecccccceeEEEecCCCCcEEEEeCCCCCCe-EEEEECCCCCeeEEEe---CCCCeE
Q 012679 298 MASSNS---------VTQW-LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC-IKFWNTHTGACLNSVD---TGSQVC 363 (458)
Q Consensus 298 ~~~~~~---------~~~~-~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~-i~lwd~~~~~~~~~~~---~~~~v~ 363 (458)
.+.... ...+ +..+.+|...|.+++|+|++ .++++++ .|++ |++||+++++++..+. +...|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~ 244 (355)
T 3vu4_A 168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADVV 244 (355)
T ss_dssp C------------------CCEEECCCSSCEEEEEECTTS-SEEEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCEE
T ss_pred CCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcEE
Confidence 754100 0112 56788999999999999975 5666766 8998 9999999999999997 677899
Q ss_pred EEEEcCCCCeEEEEecCCCCcEEEEeCCCcee--eEEEe---------------------CCCCcEEEEEEcCCCCEEEE
Q 012679 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVK--MAELS---------------------GHTSRVLFMAQSPDGCTVAS 420 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~--~~~~~---------------------~h~~~V~~l~~spdg~~l~s 420 (458)
+++|+|++++|+++ ..|+.|+|||+..... ...+. .+......++|++||++|++
T Consensus 245 ~~~~s~~~~~l~s~--s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~ 322 (355)
T 3vu4_A 245 DMKWSTDGSKLAVV--SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVV 322 (355)
T ss_dssp EEEECTTSCEEEEE--ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEE
T ss_pred EEEECCCCCEEEEE--ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEE
Confidence 99999999999984 4899999999975431 11111 11223467899999999999
Q ss_pred EeCCCcEEEEecCCCCc
Q 012679 421 AAADETLRFWNVFGAPQ 437 (458)
Q Consensus 421 ~s~Dg~i~iW~~~~~~~ 437 (458)
++.||.+++|++.....
T Consensus 323 ~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 323 WPHTRMIETFKVVFDDE 339 (355)
T ss_dssp ETTTTEEEEEEEEEETT
T ss_pred EeCCCeEEEEEEEcCCC
Confidence 99999999999976554
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=2.9e-30 Score=252.40 Aligned_cols=277 Identities=14% Similarity=0.130 Sum_probs=195.8
Q ss_pred CCeEEEEcCCEEEEEECCCCC--------eeeEEEecCCCCCEEEEEEc--------------------CCCCEEEEEec
Q 012679 152 SNVLAIALGSTVYLWDASDGT--------TSELVTVDDENGPVTSVNWA--------------------PDGRHIAIGLN 203 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~--------~~~~~~~~~h~~~V~~v~~s--------------------~~g~~la~g~~ 203 (458)
.++++++.++.|.+|+..... ...+..+ .+...+..+.|+ +++.+||+|+.
T Consensus 31 ~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~ 109 (393)
T 4gq1_A 31 SNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQ 109 (393)
T ss_dssp TTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEET
T ss_pred CCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeC
Confidence 578999999999999753211 1112222 234455555554 34568999999
Q ss_pred CCeEEEEeCCCceeeE-----EecCCCcccEEEEEeC----------CCeEEEEeCCCcEEEEEccCCCeeEEEEccccc
Q 012679 204 NCQVQLWDSTANRQLR-----TLRGGHRSRVGSLAWN----------NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ 268 (458)
Q Consensus 204 dg~v~iwd~~~~~~~~-----~~~~~~~~~v~~l~~~----------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~ 268 (458)
|++|+|||+.+++... .+. +|...|.+++|+ +++|++|+.|++|++||+++... ...+.+|..
T Consensus 110 d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-~~~~~~~~~ 187 (393)
T 4gq1_A 110 DNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-ILAGYPLSS 187 (393)
T ss_dssp TSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE-EEEEEECSS
T ss_pred CCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce-eeeecCCCC
Confidence 9999999998886543 234 499999999994 57999999999999999987665 456667889
Q ss_pred ceEeEEEcCCCC-EEEEEECCCcEEEEeCCCCCCCCcce-------------------eeeeecccccceeEEEecCCCC
Q 012679 269 EVCGLKWSASGQ-QLASGGNDNLLHIWDRSMASSNSVTQ-------------------WLHRLEEHTSAVKAIAWCPFQS 328 (458)
Q Consensus 269 ~v~~l~~spd~~-~l~sg~~dg~i~iwd~~~~~~~~~~~-------------------~~~~~~~h~~~v~~l~~~p~~~ 328 (458)
.|.+++|+|++. +|++|+.|++|++||++++....... ......+|...|.+++|++...
T Consensus 188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg 267 (393)
T 4gq1_A 188 PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG 267 (393)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT
T ss_pred CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC
Confidence 999999999874 89999999999999998765421100 0112346788899999974345
Q ss_pred cEEEEeCCCCCCeEEEEECCCCCeeEEEeC-------------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 329 NLLATGGGGGDRCIKFWNTHTGACLNSVDT-------------------GSQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 329 ~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-------------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
..+++++ .|+.+++||+.++.....+.. ........|++....+++++|..|+.|+|||
T Consensus 268 ~~l~s~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd 345 (393)
T 4gq1_A 268 SGILAMC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLIN 345 (393)
T ss_dssp CEEEEEC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred CEEEEEe--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence 5666666 899999999988765544321 1122233455544433444477899999999
Q ss_pred CCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 390 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
..+++.+..+.+|..+|.+++|+|||++||+++.|| +.+|++..
T Consensus 346 ~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 346 TYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp TTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred CCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 999999988889999999999999999999998766 66676643
No 108
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=2.2e-30 Score=241.17 Aligned_cols=277 Identities=16% Similarity=0.156 Sum_probs=195.3
Q ss_pred cceeeccC----CCeEEEEcCCEEEEEECCCC-CeeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeE-EEEeC--CC
Q 012679 144 LNLLDWGS----SNVLAIALGSTVYLWDASDG-TTSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQV-QLWDS--TA 214 (458)
Q Consensus 144 ~~~~~~~~----~~~la~~~d~~v~iwd~~~~-~~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v-~iwd~--~~ 214 (458)
+.++-|.. ...+.++....|.+|+..++ +.+.+.++..|..+|..|.+.||-. ++.++-.+=.+ .++-+ ..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 55666753 33788889999999999887 3466888999999999999998643 33333222111 11111 11
Q ss_pred c----eeeEEecCCCcccEEEEEeCCCeEEEEe--CCCcEEEEEccCCCeeEEEEcccccceEeEEEcC---CCCEEEEE
Q 012679 215 N----RQLRTLRGGHRSRVGSLAWNNHILTTGG--MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA---SGQQLASG 285 (458)
Q Consensus 215 ~----~~~~~~~~~~~~~v~~l~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp---d~~~l~sg 285 (458)
. .... ..++|...|..+ -+++++.+++ .|+.|++|++......+..+.+|...+..++|++ ++.+|++|
T Consensus 122 d~~~~~~~l-~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 122 DDESEKQVL-LKSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp ----CCEEE-EEEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred CccccccEE-EeCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 1 1111 112255455444 1344444433 5999999999665556778889999999999999 78999999
Q ss_pred ECCCcEEEEeCCCCCCCCcceeeeeecccc---cceeEEEecCCCCcEE-----------EEeCCCCCCeEEEEECCCCC
Q 012679 286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHT---SAVKAIAWCPFQSNLL-----------ATGGGGGDRCIKFWNTHTGA 351 (458)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~ll-----------~s~~g~~d~~i~lwd~~~~~ 351 (458)
+.|++|+|||+.+++. +.++.+|. ..+.+++|+|++..++ ++ |+.|++|++||..+++
T Consensus 200 S~D~TIkIWDl~TGk~------l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS--Gs~D~tIklWd~~tgk 271 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQL------LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL--RSPVFQLIVINPKTTL 271 (356)
T ss_dssp ETTSEEEEEETTTCCE------EEEEECCC---CCCEEEEEEETTEEEEEEC--------------CCEEEEEEETTTTE
T ss_pred cCCCcEEEEECCCCcE------EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec--cCCCcEEEEEECCCCE
Confidence 9999999999999876 77776543 4677789999866553 34 4499999999999999
Q ss_pred eeEEEe----CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE-EEEEcCCCCEEEEEeCCCc
Q 012679 352 CLNSVD----TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL-FMAQSPDGCTVASAAADET 426 (458)
Q Consensus 352 ~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~-~l~~spdg~~l~s~s~Dg~ 426 (458)
++..+. .+.....+..+.++..+++ |..|++|+|||+.+++.+.++.+|...+. .++|+|||++|++|+.|++
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~sg~~lAS--gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDVKDHCAAA--ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEEETTEEEE--EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred EEEEEEeeccCCCcceeEccccCCCEEEE--EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 877652 1211112222233555665 66899999999999999999999987655 5899999999999999999
Q ss_pred EEEEec
Q 012679 427 LRFWNV 432 (458)
Q Consensus 427 i~iW~~ 432 (458)
|+|||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999996
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=6e-30 Score=243.79 Aligned_cols=249 Identities=20% Similarity=0.300 Sum_probs=203.6
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCe--eeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCc
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTT--SELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~--~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~ 215 (458)
-.+++++|++ ..+++++.||.|++||+.++.. .....+.+|...|++++|+| ++++|++|+.||.|++||+.++
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence 3588899987 3488888899999999986532 34667789999999999999 6999999999999999999887
Q ss_pred ---------eeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEE------------EEcccccce
Q 012679 216 ---------RQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVE------------TYRGHNQEV 270 (458)
Q Consensus 216 ---------~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~------------~~~~h~~~v 270 (458)
+.+..+.. |...|.+++|+ +.+|++++.||.|++||+++...... ....|...+
T Consensus 92 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 92 QEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170 (351)
T ss_dssp SCTTSSCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred cccccccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence 55667766 99999999995 67999999999999999987653211 012678899
Q ss_pred EeEEEcCC---CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC---cEEEEeCCCCCCeEEE
Q 012679 271 CGLKWSAS---GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS---NLLATGGGGGDRCIKF 344 (458)
Q Consensus 271 ~~l~~spd---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~---~ll~s~~g~~d~~i~l 344 (458)
.+++|+|+ +.+|++++.|+.+.+|+...... ..+..+.+|...|.+++|+|++. .++++++ .|+.|++
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~i 244 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL----HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDGRIRI 244 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE----EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEE
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCCCce----eeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCCeEEE
Confidence 99999997 99999999999998888766543 23567788999999999999863 6788877 9999999
Q ss_pred EECCCC----------------------------------------------CeeEEEe-CCCCeEEEEEcCCCCeEEEE
Q 012679 345 WNTHTG----------------------------------------------ACLNSVD-TGSQVCALLWNKNERELLSS 377 (458)
Q Consensus 345 wd~~~~----------------------------------------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 377 (458)
||++++ +.+..+. +...|++++|+|++++|++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s- 323 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS- 323 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE-
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE-
Confidence 999875 3444444 4567999999999999998
Q ss_pred ecCCCCcEEEEeCCCceeeEEE
Q 012679 378 HGFTQNQLTLWKYPSMVKMAEL 399 (458)
Q Consensus 378 ~g~~d~~i~iwd~~~~~~~~~~ 399 (458)
|..||.|+||++.+++.+..+
T Consensus 324 -~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 324 -AGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp -EETTSCEEEEEECTTSCEEEE
T ss_pred -ecCCCcEEEEecCcCcchhhe
Confidence 448999999999977554433
No 110
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.1e-29 Score=244.49 Aligned_cols=249 Identities=14% Similarity=0.207 Sum_probs=203.4
Q ss_pred EEEecCCCCCEEEEEEcCC---CCEEEEEecCCeEEEEeCCC-ceee-EEecCCCcccEEEEEeC--CCeEEEEeCCCcE
Q 012679 176 LVTVDDENGPVTSVNWAPD---GRHIAIGLNNCQVQLWDSTA-NRQL-RTLRGGHRSRVGSLAWN--NHILTTGGMDGLI 248 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~---g~~la~g~~dg~v~iwd~~~-~~~~-~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i 248 (458)
+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.. |...|.+++|+ +.+|++|+.||.|
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 6678899999999999998 69999999999999999987 5555 55665 99999999994 6899999999999
Q ss_pred EEEEccCCCeeEEEEcccccceEeEEE--cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679 249 INNDVRVRDHIVETYRGHNQEVCGLKW--SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~--spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
++||+++... ..+.+|...|.+++| +|++++|++++.||.|++||++.... +..+..+. .+.++.+.+
T Consensus 111 ~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~-~~~~~~~~~- 180 (368)
T 3mmy_A 111 KMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP------MMVLQLPE-RCYCADVIY- 180 (368)
T ss_dssp EEEETTTTEE--EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC------SEEEECSS-CEEEEEEET-
T ss_pred EEEEcCCCCc--eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE------EEEEecCC-CceEEEecC-
Confidence 9999987764 346679999999999 99999999999999999999998766 55665554 566666665
Q ss_pred CCcEEEEeCCCCCCeEEEEECCCCCeeEEEe---CCCCeEEEEEcCCCCe----EEEEecCCCCcEEEEeCCCc---eee
Q 012679 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVD---TGSQVCALLWNKNERE----LLSSHGFTQNQLTLWKYPSM---VKM 396 (458)
Q Consensus 327 ~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~----l~~~~g~~d~~i~iwd~~~~---~~~ 396 (458)
..+++. + .++.+++|++.......... ....+..+.+.++... +++ |..++.|++|++... ..+
T Consensus 181 -~~~~~~-~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~~~ 254 (368)
T 3mmy_A 181 -PMAVVA-T--AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL--GSIEGRVAIHYINPPNPAKDN 254 (368)
T ss_dssp -TEEEEE-E--GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE--EETTSEEEEEESSCSCHHHHS
T ss_pred -CeeEEE-e--CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE--ecCCCcEEEEecCCCCccccc
Confidence 344443 3 78999999998876544332 2345666666665554 666 558999999999987 667
Q ss_pred EEEeCCCC------------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 397 AELSGHTS------------RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 397 ~~~~~h~~------------~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
..+.+|.. .|++++|+|++++|++++.||.|++||+..+..+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence 78888876 7999999999999999999999999999987665543
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=5.9e-30 Score=246.70 Aligned_cols=249 Identities=12% Similarity=0.119 Sum_probs=181.1
Q ss_pred EEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeE-EEEe
Q 012679 165 LWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL-TTGG 243 (458)
Q Consensus 165 iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l-~sg~ 243 (458)
||++.+.+. +.....|...|++++|+|||++||+|+.+| ++|||+.+++....... +...+..+.++++.+ ++|+
T Consensus 3 i~s~~~~~~--~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNP--IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEEEECS
T ss_pred cccccccCC--ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEEEcCCCCEEEEEEC
Confidence 455555444 556678999999999999999999998775 78999998877665543 333333344456665 6788
Q ss_pred CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC-CCCCcceeeeeecccccceeEEE
Q 012679 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA-SSNSVTQWLHRLEEHTSAVKAIA 322 (458)
Q Consensus 244 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~h~~~v~~l~ 322 (458)
.|+.|++||+.++.. +..+. |...|.++.|+++. ++++ .|+.|++||+... .. +..+.. ....++
T Consensus 79 ~d~~v~iWd~~~~~~-~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~------~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQD-VSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR------ITDDIR---FGGVCE 144 (355)
T ss_dssp STTEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB------SSCCEE---EEEEEE
T ss_pred CccEEEEEECCCCcE-EEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee------eEEecc---CCceEE
Confidence 889999999987765 44554 67799999998764 4444 4789999999877 43 333333 334456
Q ss_pred ecCCCCcEEEEeCCCCCCeEEEEECCCCC----------------eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCc-
Q 012679 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGA----------------CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQ- 384 (458)
Q Consensus 323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~----------------~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~- 384 (458)
+++ .+++.++|+.||.|++||+.++. ++..+. +...|.+++|+|++++|++ |..|++
T Consensus 145 ~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s--~s~d~~~ 219 (355)
T 3vu4_A 145 FSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT--CSQDGTI 219 (355)
T ss_dssp EET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE--EETTCSE
T ss_pred EEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE--EeCCCCE
Confidence 666 44444324499999999999876 144443 4678999999999999998 558998
Q ss_pred EEEEeCCCceeeEEEe-C-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 385 LTLWKYPSMVKMAELS-G-HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 385 i~iwd~~~~~~~~~~~-~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
|+|||+.+++.+.++. + |...|.+++|+|+|++|++++.|++|++||+....
T Consensus 220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999999999998 6 99999999999999999999999999999997654
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7e-31 Score=259.69 Aligned_cols=259 Identities=8% Similarity=0.053 Sum_probs=203.2
Q ss_pred ccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.+.+++|+++ .+++++.|++|+ |...++ .+.+|...|.+|+|+|+| .++.+.+|+ ++....
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-----~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~~ 79 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAK-----DINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQNGL 79 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EECCCS-----CCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCSSCS
T ss_pred cEEEEEECCCCCEEEEEcCCceee--cccccc-----eecCCCccEEEEEECCCC-------CcceEEEEe---CCCceE
Confidence 5778999983 466667889999 755554 337899999999999999 455555554 443333
Q ss_pred ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc-----ceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ-----EVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~-----~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
+...|...|.+++| +|..|++++.||.|++||... ++..+. |.. .|.+++|||||++||+|+.||+|+|
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 44337889999999 579999999999999999643 455666 665 5999999999999999999999999
Q ss_pred EeCCCCCCCCc-ceeeeee----cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---eEEEe--CCCCeE
Q 012679 294 WDRSMASSNSV-TQWLHRL----EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---LNSVD--TGSQVC 363 (458)
Q Consensus 294 wd~~~~~~~~~-~~~~~~~----~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~~~~~--~~~~v~ 363 (458)
||+..+..... .-.+.++ .+|...|.+++|+|++ +++ ++ .|+.|++||+.++.. ..++. +...|.
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa-ss--~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA-AL--SNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE-EE--TTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE-Ee--CCCeEEEEECCCCccccceeeecccccCcEE
Confidence 99988642110 0114554 6788899999999987 444 44 799999999998874 34553 346799
Q ss_pred EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE--cCCCCEEEEEeCCCcEEEEecC
Q 012679 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ--SPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~--spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
+++|+ +..+++++ ++.|++||+.+++......+|.+.|..++| +||+..|++++.||+ ++|.+.
T Consensus 231 svaFs--g~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKIV--DYKVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEE--TTEEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEE--CCEEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999 67777752 589999999988885544489999999999 999999999999999 999985
No 113
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=3.6e-30 Score=251.62 Aligned_cols=269 Identities=18% Similarity=0.290 Sum_probs=215.4
Q ss_pred CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEec------------CCCc
Q 012679 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLR------------GGHR 226 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~------------~~~~ 226 (458)
++.+++|+++.++. ...+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. .+|.
T Consensus 22 ~~~~~v~~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKD--RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTT--EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcc--eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 34567777776665 556678999999999999 99999999999999999999877655443 2499
Q ss_pred ccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC---CCEEEEEECCCcEEEEeCCCCC
Q 012679 227 SRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS---GQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 227 ~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd---~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
..|.+++|+ +.+|++++.||.|++||+.+... ...+ .+...+.++.|++. +.++++|+.||.|++||++.+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 999999994 46899999999999999997664 3333 37788999999984 5599999999999999998876
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEE----------------eCCCCeE
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSV----------------DTGSQVC 363 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~----------------~~~~~v~ 363 (458)
. +..+..|...|.+++|+|++..++++++ .|+.|++||++++. ++..+ .+...|.
T Consensus 178 ~------~~~~~~~~~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 178 C------SHILQGHRQEILAVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp C------CEEECCCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred e------eeeecCCCCcEEEEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 6 6778899999999999999888888877 99999999998876 33333 2456799
Q ss_pred EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-----CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-----SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-----~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
+++|+|+++++++ +..|+.|++||+.+++....+.++. ..+........+..+++++.|+.|++||+..+..+
T Consensus 250 ~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 250 GLCFTSDGLHLLT--VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp EEEECTTSSEEEE--EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEE--ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 9999999999998 4489999999999987765544332 22222233334556777888999999999887766
Q ss_pred cccC
Q 012679 439 ISKS 442 (458)
Q Consensus 439 ~~~~ 442 (458)
....
T Consensus 328 ~~~~ 331 (408)
T 4a11_B 328 TMLK 331 (408)
T ss_dssp EEEC
T ss_pred eeec
Confidence 5543
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.5e-29 Score=247.95 Aligned_cols=242 Identities=16% Similarity=0.301 Sum_probs=197.3
Q ss_pred EEEEEEcCCCCEEE-EEecCCeEEEEeCCCce----eeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCC
Q 012679 186 VTSVNWAPDGRHIA-IGLNNCQVQLWDSTANR----QLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD 257 (458)
Q Consensus 186 V~~v~~s~~g~~la-~g~~dg~v~iwd~~~~~----~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~ 257 (458)
...++++|+...++ +|+.||.|+||++.... .+..+.+ |...|.+++|+ +.+|++|+.||.|++||+....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34578888765444 47889999999986543 2334555 99999999994 5899999999999999998763
Q ss_pred ------eeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeee--cccccceeEEEecCCCC
Q 012679 258 ------HIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQS 328 (458)
Q Consensus 258 ------~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~ 328 (458)
..+..+.+|...|.+++|+|++ ++|++|+.||.|++||++.+.. +..+ ..|...|.+++|+|++.
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA------VLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE------EEEECTTTCCSCEEEEEECTTSS
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc------cEEEecCCCCCceEEEEECCCCC
Confidence 3467788999999999999998 6999999999999999998765 6677 78999999999999766
Q ss_pred cEEEEeCCCCCCeEEEEECCCCCeeEEE-eCC-C-CeEEEEEcCCCCeEEEEec-CCCCcEEEEeCCCcee-eEEEe-CC
Q 012679 329 NLLATGGGGGDRCIKFWNTHTGACLNSV-DTG-S-QVCALLWNKNERELLSSHG-FTQNQLTLWKYPSMVK-MAELS-GH 402 (458)
Q Consensus 329 ~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~-~-~v~~~~~s~~~~~l~~~~g-~~d~~i~iwd~~~~~~-~~~~~-~h 402 (458)
.+++ ++ .|+.|++||+++++.+..+ ..+ . .+..+.|+|++.+++++.. ..++.|++||+.+++. +.... .|
T Consensus 190 ~l~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 266 (402)
T 2aq5_A 190 LICT-SC--RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT 266 (402)
T ss_dssp CEEE-EE--TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred EEEE-Ee--cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence 5554 44 8999999999999999887 333 3 3899999999998887310 5799999999988664 33333 57
Q ss_pred CCcEEEEEEcCCCCEEEE-EeCCCcEEEEecCCCCc
Q 012679 403 TSRVLFMAQSPDGCTVAS-AAADETLRFWNVFGAPQ 437 (458)
Q Consensus 403 ~~~V~~l~~spdg~~l~s-~s~Dg~i~iW~~~~~~~ 437 (458)
...|.+++|+|++++|++ |+.||.|++|++..+..
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 788999999999999975 45799999999988764
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.4e-29 Score=250.52 Aligned_cols=244 Identities=20% Similarity=0.381 Sum_probs=200.9
Q ss_pred ccccceeeccCC---CeEEEEcCCEEEEEECCC--------CCeeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeEE
Q 012679 141 DYYLNLLDWGSS---NVLAIALGSTVYLWDASD--------GTTSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQ 208 (458)
Q Consensus 141 d~~~~~~~~~~~---~~la~~~d~~v~iwd~~~--------~~~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~ 208 (458)
...++++.|++. .+++++.+|.|++||+.+ +....+..+.+|...|++++|+|++. +|++|+.||.|+
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 346888999874 356666789999999976 23445778889999999999999988 999999999999
Q ss_pred EEeCCCcee-------eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEc
Q 012679 209 LWDSTANRQ-------LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWS 276 (458)
Q Consensus 209 iwd~~~~~~-------~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~s 276 (458)
+||+.++.. ...+.. |...|.+++|+ +.+|++++.||.|++||++... ..+..+..|...|++++|+
T Consensus 208 vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 286 (430)
T 2xyi_A 208 LWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286 (430)
T ss_dssp EEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred EEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence 999987432 344554 99999999994 5799999999999999999763 4456777999999999999
Q ss_pred CCCC-EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC------
Q 012679 277 ASGQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT------ 349 (458)
Q Consensus 277 pd~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~------ 349 (458)
|++. +|++|+.||.|++||++.... ++..+..|...|.+++|+|++..++++++ .|+.|++||+..
T Consensus 287 p~~~~~l~tg~~dg~v~vwd~~~~~~-----~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 287 PYSEFILATGSADKTVALWDLRNLKL-----KLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTS-----CSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGGTTCCCC
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCC-----CeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCccccC
Confidence 9987 689999999999999987433 26778889999999999999888888887 899999999987
Q ss_pred --------CCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679 350 --------GACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 350 --------~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~ 393 (458)
.+.+..+.. ...|.+++|+|++..++++ +..||.|+||++...
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s-~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS-VSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE-EETTSEEEEEEECHH
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE-EECCCCEEEeEcccc
Confidence 244555443 4579999999999944443 348999999998653
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.2e-29 Score=246.50 Aligned_cols=240 Identities=11% Similarity=0.054 Sum_probs=197.6
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecC-------------------------------------
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRG------------------------------------- 223 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~------------------------------------- 223 (458)
.++.+++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999966655 67899999999988 5555442
Q ss_pred ----------------CCcccEEEEEeC--CCeE-EEEeCCCcEEEEEcc--CCCeeEEEEc--ccccceEeEEEcCCCC
Q 012679 224 ----------------GHRSRVGSLAWN--NHIL-TTGGMDGLIINNDVR--VRDHIVETYR--GHNQEVCGLKWSASGQ 280 (458)
Q Consensus 224 ----------------~~~~~v~~l~~~--~~~l-~sg~~dg~i~vwd~~--~~~~~~~~~~--~h~~~v~~l~~spd~~ 280 (458)
+|...|.+++|+ +.+| ++|+.||.|++||+. .+.. +..+. .|...|++++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCC
Confidence 133469999994 5675 899999999999998 5553 45554 5678999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC--CCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-
Q 012679 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF--QSNLLATGGGGGDRCIKFWNTHTGACLNSVD- 357 (458)
Q Consensus 281 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~- 357 (458)
+|++|+.||.|++|++........ ....+.+|...|.+++|+|+ +..++++++ .|+.|++||+.+++++..+.
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKF--TQEPILGHVSMLTDVHLIKDSDGHQFIITSD--RDEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSC--CCCCSEECSSCEEEEEEEECTTSCEEEEEEE--TTSCEEEEEESCTTCEEEECC
T ss_pred EEEEEeCCCcEEEEecCCcccccc--cceeeecccCceEEEEEcCCCCCCcEEEEEc--CCCcEEEEECCCCceeeeeec
Confidence 999999999999999987664210 13466789999999999997 245666666 89999999999999887743
Q ss_pred -CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-------------------------CCcEEEEEE
Q 012679 358 -TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-------------------------TSRVLFMAQ 411 (458)
Q Consensus 358 -~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-------------------------~~~V~~l~~ 411 (458)
+...|.+++|+ ++++|+++ ..|+.|++||+.+++.+..+..+ ...|.+++|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~--~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSA--GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEE--ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred CCCCceEEEEEC-CCCEEEEE--eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 56789999999 99999984 48999999999999988888632 356999999
Q ss_pred cCCCCEEEEEe-CCCcEEEEec
Q 012679 412 SPDGCTVASAA-ADETLRFWNV 432 (458)
Q Consensus 412 spdg~~l~s~s-~Dg~i~iW~~ 432 (458)
+|++++|++++ .|+.|++|++
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999 8999999999
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=243.17 Aligned_cols=235 Identities=7% Similarity=-0.020 Sum_probs=187.0
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEcc---------CCCeeE
Q 012679 190 NWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR---------VRDHIV 260 (458)
Q Consensus 190 ~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~---------~~~~~~ 260 (458)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|++. +++|+.|+.|++|+.. +...+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 345678899999999999999999999888776 356777778777 9999999999999765 333223
Q ss_pred EEEcccccceEeEEEcC--CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee-cccccceeEEEecCCCCcEEEEeCCC
Q 012679 261 ETYRGHNQEVCGLKWSA--SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 261 ~~~~~h~~~v~~l~~sp--d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~ 337 (458)
....+|...|.+++|+| ++++|++|+.||.|++||++.+.. .... ..|...|.+++|+|+ ..++++|+
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------~~~~~~~~~~~i~~~~~~pd-g~~lasg~-- 189 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ------YIVHSAKSDVEYSSGVLHKD-SLLLALYS-- 189 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE------EEEECCCSSCCCCEEEECTT-SCEEEEEC--
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE------EEEEecCCCCceEEEEECCC-CCEEEEEc--
Confidence 33347778999999999 999999999999999999987765 3333 345668999999996 55777766
Q ss_pred CCCeEEEEECCCCCee-EEEeC--CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC---CCCcEE--EE
Q 012679 338 GDRCIKFWNTHTGACL-NSVDT--GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG---HTSRVL--FM 409 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~-~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~---h~~~V~--~l 409 (458)
.|+.|++||+++++.+ ..+.. ...|.+++|+|++.+|++++ ++.|++||+++.+.+..+.. |...+. ++
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY 266 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEE
Confidence 9999999999999987 66654 67899999999999999853 44999999998877655443 444444 69
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEecCCCCcccc
Q 012679 410 AQSPDGCTVASAAA-DETLRFWNVFGAPQVIS 440 (458)
Q Consensus 410 ~~spdg~~l~s~s~-Dg~i~iW~~~~~~~~~~ 440 (458)
+|+|+|++|++++. |+.|++|++........
T Consensus 267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred EECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence 99999999999998 99999999976655443
No 118
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=5.3e-29 Score=240.92 Aligned_cols=240 Identities=10% Similarity=0.054 Sum_probs=188.1
Q ss_pred ccceeeccCCCeEEEE-----------cCCEEEEEECCCCCe--eeEEE-----ecCCCCCEEEEEEcCCCCEEEEEe--
Q 012679 143 YLNLLDWGSSNVLAIA-----------LGSTVYLWDASDGTT--SELVT-----VDDENGPVTSVNWAPDGRHIAIGL-- 202 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~-----------~d~~v~iwd~~~~~~--~~~~~-----~~~h~~~V~~v~~s~~g~~la~g~-- 202 (458)
.+.+++++++.+++++ .|+.+++|++.+... ..... ...+...+.+++|+|||++||+++
T Consensus 75 ~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~ 154 (365)
T 4h5i_A 75 SPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK 154 (365)
T ss_dssp CCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC
T ss_pred ceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC
Confidence 4667788777666654 367899999775432 11111 123456799999999999987655
Q ss_pred cCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCC
Q 012679 203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASG 279 (458)
Q Consensus 203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~ 279 (458)
.|++|+|||+.+++.+..+. |...|.+++| ++.+|++++.+ .+.+|+..++.... ....+|...|.+++|+|++
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD 231 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT
T ss_pred CCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC
Confidence 68999999999999998886 7788999999 47888888855 45666666565433 3456789999999999999
Q ss_pred CEEEEEECCC----cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE
Q 012679 280 QQLASGGNDN----LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS 355 (458)
Q Consensus 280 ~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~ 355 (458)
+++++++.|+ .+++||+...... ......+.+|...|.+++|+|++ .+||+|+ .|++|+|||+.+++++..
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs--~D~~V~iwd~~~~~~~~~ 306 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTS--VLRSKQVTNRFKGITSMDVDMKG-ELAVLAS--NDNSIALVKLKDLSMSKI 306 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEE--EEEEEEEESSCSCEEEEEECTTS-CEEEEEE--TTSCEEEEETTTTEEEEE
T ss_pred CEEEEEecCCcceeEEeecccccceec--ceeeeeecCCCCCeEeEEECCCC-CceEEEc--CCCEEEEEECCCCcEEEE
Confidence 9999999887 6888887655431 11245677899999999999975 5666766 899999999999999988
Q ss_pred Ee--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 356 VD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 356 ~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
+. +...|++++|+|++++|++ |..|++|+||+++.
T Consensus 307 ~~~gH~~~V~~v~fSpdg~~laS--~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 307 FKQAHSFAITEVTISPDSTYVAS--VSAANTIHIIKLPL 343 (365)
T ss_dssp ETTSSSSCEEEEEECTTSCEEEE--EETTSEEEEEECCT
T ss_pred ecCcccCCEEEEEECCCCCEEEE--EeCCCeEEEEEcCC
Confidence 73 5678999999999999999 55899999999974
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-29 Score=266.12 Aligned_cols=244 Identities=21% Similarity=0.359 Sum_probs=205.8
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEeCCCce-
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANR- 216 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~--g~~la~g~~dg~v~iwd~~~~~- 216 (458)
..+++++|++ ..+++++.||.|+|||+.++....+..+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+++
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 3578888886 4588888999999999987666668888999999999999988 9999999999999999999887
Q ss_pred -eeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcC-------------
Q 012679 217 -QLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSA------------- 277 (458)
Q Consensus 217 -~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~sp------------- 277 (458)
.+..+.. |...|.+++|+ +..+++|+.||.|++||++.... ....+.+|...|.+++|+|
T Consensus 90 ~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~ 168 (753)
T 3jro_A 90 SQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168 (753)
T ss_dssp EEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CG
T ss_pred cccccccC-CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCC
Confidence 6666666 99999999995 67999999999999999987632 3456678999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC--CcEEEEeCCCCCCeEEEEECCCCCe---
Q 012679 278 SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ--SNLLATGGGGGDRCIKFWNTHTGAC--- 352 (458)
Q Consensus 278 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~ll~s~~g~~d~~i~lwd~~~~~~--- 352 (458)
++.+|++|+.||.|++||++..... ......+.+|...|.+++|+|++ ..++++++ .||.|++||+.++..
T Consensus 169 d~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~~~~~~~ 244 (753)
T 3jro_A 169 ESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWK 244 (753)
T ss_dssp GGCCEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESSSSSCCB
T ss_pred CCCEEEEEECCCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCCCCCcce
Confidence 5899999999999999999876431 23356778999999999999985 66777776 899999999998742
Q ss_pred ---eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 353 ---LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 353 ---~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
.....+...+.+++|+|++..+++ |..||.|++|++..
T Consensus 245 ~~~~~~~~~~~~v~~l~~spdg~~l~s--~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 245 KTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENL 285 (753)
T ss_dssp CCBSSSSCCSSCCCCEEECTTTCCEEE--ECSSSCEECCBCCS
T ss_pred eEEeccCCCCCceEEEEEcCCCCEEEE--EcCCCEEEEEecCC
Confidence 111234567999999999999988 55799999999874
No 120
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=6.7e-28 Score=237.72 Aligned_cols=256 Identities=20% Similarity=0.362 Sum_probs=201.5
Q ss_pred ccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-e
Q 012679 141 DYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-Q 217 (458)
Q Consensus 141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-~ 217 (458)
..++++++|++ ..+++++.|+.|+|||+.+++. +..+.+|...|.+++|+ +.+|++|+.|+.+++||..... .
T Consensus 147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~--~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~ 222 (420)
T 4gga_A 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 222 (420)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee
Confidence 34789999987 4577888999999999999876 77888999999998874 6799999999999999988754 4
Q ss_pred eEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCe---eEEEEcccccceEeEEEcCCC-CEEEEE--ECCC
Q 012679 218 LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH---IVETYRGHNQEVCGLKWSASG-QQLASG--GNDN 289 (458)
Q Consensus 218 ~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~-~~l~sg--~~dg 289 (458)
+..+.. |...+..+.| ++.++++++.||.|++||...+.. .+.....|...|.+++|+|++ .+++++ +.|+
T Consensus 223 ~~~~~~-h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 223 VATLSG-HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp EEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred eEEecc-cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence 455665 9999999999 478999999999999999987642 345677899999999999965 455554 4799
Q ss_pred cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEc
Q 012679 290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWN 368 (458)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s 368 (458)
.|++||+.++.. ...+.. ...+.++.|+|++..+++++ |..|+.|++||+.+++++..+.. ...|.+++|+
T Consensus 302 ~I~iwd~~t~~~------~~~~~~-~~~v~~~~~~~~~~~lv~~s-g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s 373 (420)
T 4gga_A 302 HIRIWNVCSGAC------LSAVDA-HSQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 373 (420)
T ss_dssp EEEEEETTTTEE------EEEEEC-SSCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEEEEeCCcccc------ceeecc-ccceeeeeecCCCCeEEEEE-ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 999999988765 555544 46788999999877766554 55899999999999999999874 5789999999
Q ss_pred CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ 411 (458)
Q Consensus 369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 411 (458)
|++.+|++ |..|++|+|||+....+....+.+...+....+
T Consensus 374 pdg~~l~S--~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 374 PDGATVAS--AAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp TTSSCEEE--EETTTEEEEECCSCSSCC---------------
T ss_pred CCCCEEEE--EecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 99999998 448999999999887766666655554443333
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.2e-27 Score=236.33 Aligned_cols=268 Identities=9% Similarity=0.047 Sum_probs=217.4
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec----CCCcccEEEEEe--C
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR----GGHRSRVGSLAW--N 235 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~----~~~~~~v~~l~~--~ 235 (458)
.|+.||..++....+..+..+ ..+.+++|+|++.++++++.++.|++||+.+++.+..+. .+|...|.+++| +
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred EEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence 566666655665556666654 456799999977788888888999999999998877432 138889999999 5
Q ss_pred CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCCCcceeeeeeccc
Q 012679 236 NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSNSVTQWLHRLEEH 314 (458)
Q Consensus 236 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h 314 (458)
+.++++++.|+.|++||+++... +..+..|...+.+++|+|+++++++++ .|+.|++||++++.. +..+..
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~------~~~~~~- 252 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE------IRKTDK- 252 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE------EEECCC-
T ss_pred CEEEEEECCCCEEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE------EEEecC-
Confidence 78999999999999999987664 567778899999999999999885554 799999999987654 455544
Q ss_pred ccceeEEEecCCCCcEEEEeCCC-----CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 315 TSAVKAIAWCPFQSNLLATGGGG-----GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 315 ~~~v~~l~~~p~~~~ll~s~~g~-----~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
...+.+++|+|++..+++++.+. .|+.|++||+.+++.+..+.+...+..++|+|+++.++++ +..++.|.+||
T Consensus 253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~v~v~d 331 (433)
T 3bws_A 253 IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS-DMCCSKIEVYD 331 (433)
T ss_dssp CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE-ETTTTEEEEEE
T ss_pred CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE-ecCCCEEEEEE
Confidence 45689999999887777665221 4889999999999988888777789999999999888766 45799999999
Q ss_pred CCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC---------------CCcEEEEecCCCCcccc
Q 012679 390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA---------------DETLRFWNVFGAPQVIS 440 (458)
Q Consensus 390 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~---------------Dg~i~iW~~~~~~~~~~ 440 (458)
+.+++.+..+. +...+.+++|+|+|++|++++. ||.|++||+.+++....
T Consensus 332 ~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 332 LKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp TTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred CCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE
Confidence 99999888876 6778999999999999988877 57999999987665443
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.4e-26 Score=223.90 Aligned_cols=279 Identities=14% Similarity=0.137 Sum_probs=217.3
Q ss_pred cceeeccCC-C-eEEE-EcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeE
Q 012679 144 LNLLDWGSS-N-VLAI-ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLR 219 (458)
Q Consensus 144 ~~~~~~~~~-~-~la~-~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~ 219 (458)
+.++.|+++ . ++++ +.++.|++||+.+++. +..+..+. .+.+++|+|+|++|++++ .++.|++||+.+++.+.
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeE--EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 577889874 3 4344 4799999999999887 44454443 899999999999886554 66999999999999988
Q ss_pred EecCCCcccEEEEEeC--CCeE-EEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE-EEEECCCcEEEEe
Q 012679 220 TLRGGHRSRVGSLAWN--NHIL-TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWD 295 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd 295 (458)
.+. +...+.+++|+ ++.| ++++.++.|++||+.+++. ...+..+ ..+.+++|+|++++| ++++.|+.|++||
T Consensus 111 ~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 111 TVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp EEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 887 44578999995 5555 7888899999999987654 4555544 456899999999988 5777899999999
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEE
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELL 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 375 (458)
+++... ...+ .+...+.+++|+|++..+++++.+..++.|++||+.+++.+..+..+..+.+++|+|+++.++
T Consensus 187 ~~~~~~------~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 259 (391)
T 1l0q_A 187 TVTNSV------IDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVY 259 (391)
T ss_dssp TTTTEE------EEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred CCCCeE------EEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEE
Confidence 987654 3444 356688999999988877776532258999999999999999998888899999999999987
Q ss_pred EEecCCCCcEEEEeCCCceeeEEEeCCCCcEE---EEEEcCCC----------------------CEEEEEeCCCcEEEE
Q 012679 376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL---FMAQSPDG----------------------CTVASAAADETLRFW 430 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~---~l~~spdg----------------------~~l~s~s~Dg~i~iW 430 (458)
++ +..++.|++||+.+++.+..+..|..+.. .+.+.|++ ..+...+.|..+++|
T Consensus 260 ~s-~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W 338 (391)
T 1l0q_A 260 VA-LSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKW 338 (391)
T ss_dssp EE-ETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEE
T ss_pred EE-cCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEE
Confidence 65 44789999999999999998887765421 12332211 235566678999999
Q ss_pred ecCCCCc
Q 012679 431 NVFGAPQ 437 (458)
Q Consensus 431 ~~~~~~~ 437 (458)
++..+..
T Consensus 339 ~~~~g~~ 345 (391)
T 1l0q_A 339 DFGDGSS 345 (391)
T ss_dssp ECSSSCE
T ss_pred ECCCCcc
Confidence 9977654
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-28 Score=240.17 Aligned_cols=254 Identities=12% Similarity=0.080 Sum_probs=193.8
Q ss_pred cccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
..+..+.++|.. .+..|++.+++...+..+ .|...|.+++|||+|++||+++.||.|+|||.++ .+..+
T Consensus 53 ~~v~~V~FsPdg--------~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l 121 (588)
T 2j04_A 53 KNLFHVKEFPLE--------FENKLDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL 121 (588)
T ss_dssp GGTEEEEEECCC--------CCCTTTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC
T ss_pred ccEEEEEECCCC--------CcceEEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec
Confidence 356666666644 455555554443223443 4478999999999999999999999999999554 55555
Q ss_pred cCCCcc-----cEEEEEe--CCCeEEEEeCCCcEEEEEccCCCe------eEEEE----cccccceEeEEEcCCCCEEEE
Q 012679 222 RGGHRS-----RVGSLAW--NNHILTTGGMDGLIINNDVRVRDH------IVETY----RGHNQEVCGLKWSASGQQLAS 284 (458)
Q Consensus 222 ~~~~~~-----~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~------~~~~~----~~h~~~v~~l~~spd~~~l~s 284 (458)
. |.. .|.+++| +|.+|++|+.||+|++||+.++.. .+..+ .+|...|.+++|+||| +++
T Consensus 122 ~--~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa 197 (588)
T 2j04_A 122 D--SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA 197 (588)
T ss_dssp C--CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE
T ss_pred c--CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE
Confidence 5 443 5999999 589999999999999999987642 34565 6788899999999999 889
Q ss_pred EECCCcEEEEeCCCCCCCCcceeeeee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-eEEEeCCCCe
Q 012679 285 GGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSVDTGSQV 362 (458)
Q Consensus 285 g~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~~~~~~~v 362 (458)
++.|+.|++||+...... ....++ .+|...|.+++|+ + ..+|+++ ++.|++||+.+++. .....+...+
T Consensus 198 ss~D~tVrlWd~~~~~~~---~~~~tL~~~h~~~V~svaFs--g-~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V 268 (588)
T 2j04_A 198 ALSNNSVFSMTVSASSHQ---PVSRMIQNASRRKITDLKIV--D-YKVVLTC---PGYVHKIDLKNYSISSLKTGSLENF 268 (588)
T ss_dssp EETTCCEEEECCCSSSSC---CCEEEEECCCSSCCCCEEEE--T-TEEEEEC---SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred EeCCCeEEEEECCCCccc---cceeeecccccCcEEEEEEE--C-CEEEEEe---CCeEEEEECCCCeEEEEEcCCCceE
Confidence 999999999999876631 013445 4788999999999 3 6677664 68999999999887 4444677889
Q ss_pred EEEEE--cCCCCeEEEEecCCCCcEEEEeCCCce-----------------------eeEEEeCCCCcEEEEEEcCCCCE
Q 012679 363 CALLW--NKNERELLSSHGFTQNQLTLWKYPSMV-----------------------KMAELSGHTSRVLFMAQSPDGCT 417 (458)
Q Consensus 363 ~~~~~--s~~~~~l~~~~g~~d~~i~iwd~~~~~-----------------------~~~~~~~h~~~V~~l~~spdg~~ 417 (458)
..+.| +|++..+++ ++.+|+ ++|...... .+..++ +...|.+++|||||+.
T Consensus 269 ~~va~~~s~d~~~La~--a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~ 344 (588)
T 2j04_A 269 HIIPLNHEKESTILLM--SNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYS 344 (588)
T ss_dssp CEEEETTCSSCEEEEE--CSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSE
T ss_pred EEEEeeeCCCCCEEEE--EcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCE
Confidence 99999 999988888 558899 999874211 111222 2445999999999999
Q ss_pred EEEEeC
Q 012679 418 VASAAA 423 (458)
Q Consensus 418 l~s~s~ 423 (458)
+|+++.
T Consensus 345 lA~~~~ 350 (588)
T 2j04_A 345 IAIVYD 350 (588)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998874
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.9e-28 Score=237.31 Aligned_cols=234 Identities=14% Similarity=0.137 Sum_probs=172.8
Q ss_pred CCeEEEEcCCEEEEEECCCCCeee---EEEecCCCCCEEEEEEcC--------CCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSE---LVTVDDENGPVTSVNWAP--------DGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~---~~~~~~h~~~V~~v~~s~--------~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
..+++++.|++|+|||..+++... +..+.+|.+.|++|+|+| ||++||+|+.|++|+|||+.++..+..
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence 457888899999999999886533 334679999999999998 889999999999999999998888777
Q ss_pred ecCCCcccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeE------------------------EEEcccccceEeE
Q 012679 221 LRGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIV------------------------ETYRGHNQEVCGL 273 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~------------------------~~~~~h~~~v~~l 273 (458)
+.. |...|.+++|++ .+|++|+.||+|++||++++.... ....+|...|.++
T Consensus 182 ~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 182 GYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred ecC-CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 776 889999999953 589999999999999998765321 1124677889999
Q ss_pred EEc-CCCCEEEEEECCCcEEEEeCCCCCCCCcc-------------eeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679 274 KWS-ASGQQLASGGNDNLLHIWDRSMASSNSVT-------------QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 274 ~~s-pd~~~l~sg~~dg~i~iwd~~~~~~~~~~-------------~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
.|+ +|++.|++++.|+.+++||+......... ........+...+..+.+.+.+..++++|+ .|
T Consensus 261 ~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~D 338 (393)
T 4gq1_A 261 RWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS--QH 338 (393)
T ss_dssp EEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET--TT
T ss_pred eeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC--CC
Confidence 987 79999999999999999998876541110 001111122222223333333444566665 89
Q ss_pred CeEEEEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 340 RCIKFWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 340 ~~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
+.|++||+.+++++... .+...|.+++|+|+|++|++++ ++.+.+|.+.
T Consensus 339 g~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as---~~Gv~lvrL~ 388 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT---EGSVLLTRLM 388 (393)
T ss_dssp TEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE---SSEEEEEEEG
T ss_pred CEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEEe
Confidence 99999999999877654 5677899999999999999854 4557766643
No 125
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=5.7e-26 Score=214.29 Aligned_cols=244 Identities=22% Similarity=0.384 Sum_probs=200.1
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC-CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG-GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
.+.+|+||+++ +||+| .|++|+|||+.+++.++.+.. +|...|.+++| ++++|++|+.||.|++||+++++. +.
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-~~ 103 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LR 103 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-EE
Confidence 45789999886 77776 489999999999998887753 37888999999 478999999999999999998764 67
Q ss_pred EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341 (458)
Q Consensus 262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~ 341 (458)
.+.+|...+.++.+ ++..+++|+.++.+++|+...... .+..+.+|...+..+++++++. ++++++ .|+.
T Consensus 104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~l~s~~--~d~~ 173 (318)
T 4ggc_A 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNL 173 (318)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSC
T ss_pred EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCce-----eEEEEcCccCceEEEEEcCCCC-EEEEEe--cCcc
Confidence 88899998877655 578999999999999999877654 2667789999999999999765 555555 8999
Q ss_pred EEEEECCCCCee-----EEEeCCCCeEEEEEcCCCCeEE-EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC
Q 012679 342 IKFWNTHTGACL-----NSVDTGSQVCALLWNKNERELL-SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415 (458)
Q Consensus 342 i~lwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~-~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg 415 (458)
|++||+++++.. ........+..+.+++.+..++ .+.|..++.|++||........... +...+..+.|+|++
T Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHY 252 (318)
T ss_dssp EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTT
T ss_pred eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccc
Confidence 999999987632 2223456799999999876654 4557789999999999888776654 66789999999999
Q ss_pred CEEEEEe--CCCcEEEEecCCCCcccccC
Q 012679 416 CTVASAA--ADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 416 ~~l~s~s--~Dg~i~iW~~~~~~~~~~~~ 442 (458)
..+++++ .|+.|++||+.++..+....
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~l~ 281 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKVAELK 281 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEEC
T ss_pred cceEEEEEcCCCEEEEEECCCCcEEEEEc
Confidence 9888765 79999999999887766543
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.3e-26 Score=228.12 Aligned_cols=279 Identities=14% Similarity=0.090 Sum_probs=215.5
Q ss_pred ccceeeccCC--C-eEEEE----cCC----EEEEEEC--CCCCeeeEEEecCCCCCEEEEEEcC--------------CC
Q 012679 143 YLNLLDWGSS--N-VLAIA----LGS----TVYLWDA--SDGTTSELVTVDDENGPVTSVNWAP--------------DG 195 (458)
Q Consensus 143 ~~~~~~~~~~--~-~la~~----~d~----~v~iwd~--~~~~~~~~~~~~~h~~~V~~v~~s~--------------~g 195 (458)
.++..+|... . +++++ .+| .|+|||+ .+++......+.+|...+..+++++ .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 3556677652 3 44554 357 8999999 8888643356778888888877765 26
Q ss_pred CEEEEEecC------CeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCC---cEEEEEccCCCeeEEEEc
Q 012679 196 RHIAIGLNN------CQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDG---LIINNDVRVRDHIVETYR 264 (458)
Q Consensus 196 ~~la~g~~d------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~ 264 (458)
..++.++.+ +.|++||+.. ...+.+.. |...+.+++|+ ++.|++++.++ .|++||+.++.. ..+.
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~-~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~ 219 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVA 219 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEE
T ss_pred CEEEEEEecCCCCccceEEEEcCCC-CCCEEEeC-CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--EEee
Confidence 677777664 7999999975 44566665 88999999994 78899998875 999999998764 3566
Q ss_pred ccccceEeEEEcCCCCEEE-EEECCCc--EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC-
Q 012679 265 GHNQEVCGLKWSASGQQLA-SGGNDNL--LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR- 340 (458)
Q Consensus 265 ~h~~~v~~l~~spd~~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~- 340 (458)
.|...+.+++|+|||++|+ +++.|+. |++||+.++. ...+..|...+.+++|+|++..+++++. .++
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~l~~~s~--~~g~ 290 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGR 290 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------EEECCCCSSCEEEEEECTTSSEEEEEEC--TTSS
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-------EEeCcCCCCcccceEECCCCCEEEEEEC--CCCC
Confidence 7888999999999999888 6666654 9999988754 3566778889999999999887877764 344
Q ss_pred -eEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC-CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEE
Q 012679 341 -CIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV 418 (458)
Q Consensus 341 -~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l 418 (458)
.|.+||+.+++..........+..++|+|++++|+++... .+..|.+||+.+++.. .+..|. .+.+++|+|||++|
T Consensus 291 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l 368 (415)
T 2hqs_A 291 PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMV 368 (415)
T ss_dssp CEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEE
T ss_pred cEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEE
Confidence 7888899988765444455678899999999999886532 1358999999988764 465564 89999999999999
Q ss_pred EEEeCCC---cEEEEecCCCC
Q 012679 419 ASAAADE---TLRFWNVFGAP 436 (458)
Q Consensus 419 ~s~s~Dg---~i~iW~~~~~~ 436 (458)
++++.|+ .|++||+.+..
T Consensus 369 ~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEETTEEEEEEEETTSCC
T ss_pred EEEEcCCCccEEEEEECCCCc
Confidence 9998887 79999987543
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.1e-24 Score=221.27 Aligned_cols=273 Identities=10% Similarity=0.131 Sum_probs=214.8
Q ss_pred CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC--CCceeeEEecCCCcccEE
Q 012679 153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS--TANRQLRTLRGGHRSRVG 230 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~--~~~~~~~~~~~~~~~~v~ 230 (458)
.+++...+++|.+||..++++ +.++..+.. +.+++|+|||++|++++.|+.|.+||+ .+++.+.++. +...+.
T Consensus 151 ~~vs~~~d~~V~v~D~~t~~~--~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~ 225 (543)
T 1nir_A 151 FSVTLRDAGQIALVDGDSKKI--VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEAR 225 (543)
T ss_dssp EEEEEGGGTEEEEEETTTCCE--EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEE
T ss_pred EEEEEcCCCeEEEEECCCceE--EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcc
Confidence 355555689999999999987 555553233 899999999999999999999999999 8899888887 445678
Q ss_pred EEEeC------CCeEEEEe-CCCcEEEEEccCCCeeEEEEcc----------ccc-ceEeEEEcCCCCE-EEEEECCCcE
Q 012679 231 SLAWN------NHILTTGG-MDGLIINNDVRVRDHIVETYRG----------HNQ-EVCGLKWSASGQQ-LASGGNDNLL 291 (458)
Q Consensus 231 ~l~~~------~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~----------h~~-~v~~l~~spd~~~-l~sg~~dg~i 291 (458)
.++|+ +++|++++ .+++|.+||..+.+. +..+.. |.. .+.++.++|++.. +++...++.|
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i 304 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 304 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence 88884 57888887 489999999987764 444433 223 6889999997765 4666778999
Q ss_pred EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-----CCeEEEE
Q 012679 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-----SQVCALL 366 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-----~~v~~~~ 366 (458)
.+||+....... +..+ .+...+..++|+|++.++++++. .+++|.+||+.+++++..+..+ .....+
T Consensus 305 ~vvd~~~~~~l~----~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 305 LLVNYKDIDNLT----VTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp EEEECTTSSSCE----EEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred EEEEecCCCcce----eEEe-ccCcCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 999998765411 1233 35667889999999998888876 7899999999999999888742 222333
Q ss_pred EcCCCCeEEEEecCCCCcEEEEeCCC-------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEe-------CCCcEEEEec
Q 012679 367 WNKNERELLSSHGFTQNQLTLWKYPS-------MVKMAELSGHTSRVLFMAQSPDGCTVASAA-------ADETLRFWNV 432 (458)
Q Consensus 367 ~s~~~~~l~~~~g~~d~~i~iwd~~~-------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-------~Dg~i~iW~~ 432 (458)
++|++..++++....+++|.+||+.+ ++.+.++.+|...+..++++|+|++|++++ .+++|.+||+
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 57875566555444689999999998 899999999998899999999999999887 2789999999
Q ss_pred CCCCccc
Q 012679 433 FGAPQVI 439 (458)
Q Consensus 433 ~~~~~~~ 439 (458)
.+.+...
T Consensus 457 ~~~~~~~ 463 (543)
T 1nir_A 457 KNLDAKY 463 (543)
T ss_dssp TCTTSCC
T ss_pred CCCCCCe
Confidence 9887653
No 128
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=1.6e-24 Score=206.04 Aligned_cols=273 Identities=9% Similarity=0.037 Sum_probs=202.9
Q ss_pred eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEeCCCcee-eEEecCCCcccEEE
Q 012679 154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-NCQVQLWDSTANRQ-LRTLRGGHRSRVGS 231 (458)
Q Consensus 154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~~~~~~-~~~~~~~~~~~v~~ 231 (458)
+++.+.++.|++||..+++..... ..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+.. +.....+
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~ 88 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQI--TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-GQSSMAD 88 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEE--ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-CSSCCCC
T ss_pred EEEecCCCeEEEEeCcccceeeeE--EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-CCCCccc
Confidence 445556899999999999874443 3445566 9999999997777665 88999999999987 666664 5555554
Q ss_pred EEe--CCCeEEEEeCCC---cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EEECCCc-EEEEeCCCCCCCCc
Q 012679 232 LAW--NNHILTTGGMDG---LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SGGNDNL-LHIWDRSMASSNSV 304 (458)
Q Consensus 232 l~~--~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg~~dg~-i~iwd~~~~~~~~~ 304 (458)
++| ++.+|+++..++ .|.+||+.++.. +..+.. .....+++|+|||++|+ ++..++. |.+|++........
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 788 467888555553 899999987654 444443 34568999999998555 4456688 99999885443111
Q ss_pred ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---eEEEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---LNSVDTGSQVCALLWNKNERELLSSHGFT 381 (458)
Q Consensus 305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 381 (458)
.. .........+..++|+|++..+++++. .++.|++||+.+++. +..+..+..+..++|+|++++++++.. .
T Consensus 167 ~~--~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~ 241 (331)
T 3u4y_A 167 TG--QEFISGGTRPFNITFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTE-S 241 (331)
T ss_dssp EE--EEEECSSSSEEEEEECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECS-S
T ss_pred cC--CccccCCCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEc-C
Confidence 11 111233456789999999888888876 789999999999998 888888888999999999998887643 5
Q ss_pred CCcEEEEeCCCcee--eEEEeCC----CCc---EEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCc
Q 012679 382 QNQLTLWKYPSMVK--MAELSGH----TSR---VLFMAQSPDGCTVASAAA-DETLRFWNVFGAPQ 437 (458)
Q Consensus 382 d~~i~iwd~~~~~~--~~~~~~h----~~~---V~~l~~spdg~~l~s~s~-Dg~i~iW~~~~~~~ 437 (458)
++.|.+||..+++. +..+..+ ... +..++|+|||++|++++. ++.|.+||+.....
T Consensus 242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 77899999998877 4444333 222 355899999998866655 56999999976543
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.6e-24 Score=211.59 Aligned_cols=249 Identities=14% Similarity=0.098 Sum_probs=195.7
Q ss_pred CCCeEEEEcC------CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC---eEEEEeCCCceeeEEe
Q 012679 151 SSNVLAIALG------STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC---QVQLWDSTANRQLRTL 221 (458)
Q Consensus 151 ~~~~la~~~d------~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg---~v~iwd~~~~~~~~~~ 221 (458)
..+++.++.+ +.|++||+..+.. ..+.+|...|.+++|+|||++|++++.++ .|++||+.+++... +
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~---~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC---EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC---EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e
Confidence 4567777765 7999999986553 44556788999999999999999999875 99999999988754 4
Q ss_pred cCCCcccEEEEEeC--CCeEE-EEeCCCc--EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEE
Q 012679 222 RGGHRSRVGSLAWN--NHILT-TGGMDGL--IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHI 293 (458)
Q Consensus 222 ~~~~~~~v~~l~~~--~~~l~-sg~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~i 293 (458)
.. |...+.+++|+ ++.|+ +++.++. |++||+.++.. ..+..|...+.+++|+|||++|++++. ++ .|.+
T Consensus 219 ~~-~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 219 AS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp EC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred ec-CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 44 78899999995 66666 6766665 99999987653 567788889999999999999998886 44 6777
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCe
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE 373 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~ 373 (458)
||+..+.. ..+..+...+.+++|+|++..+++++....+..|++||+.+++... +.....+.+++|+|+++.
T Consensus 296 ~d~~~~~~-------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~ 367 (415)
T 2hqs_A 296 VNINGGAP-------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTM 367 (415)
T ss_dssp EETTSSCC-------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSE
T ss_pred EECCCCCE-------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCE
Confidence 88876543 3445567788999999998877776641124689999999988754 433448999999999999
Q ss_pred EEEEecCCCC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC
Q 012679 374 LLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416 (458)
Q Consensus 374 l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 416 (458)
|+++.. .++ .|.+||+. +.....+.+|.+.|.+++|+|.-.
T Consensus 368 l~~~s~-~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 368 VIYSSS-QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEE-ETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEEEEc-CCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 988642 233 79999986 556778889999999999999643
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=3.5e-25 Score=205.97 Aligned_cols=256 Identities=11% Similarity=0.092 Sum_probs=192.5
Q ss_pred EcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEe--
Q 012679 158 ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAW-- 234 (458)
Q Consensus 158 ~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~-- 234 (458)
+.++.|++||+.+++... +..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++........+...+.+++|
T Consensus 19 ~~~~~i~~~d~~~~~~~~---~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRV---VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCEEEEEEETTTTEEEE---EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CcceeEEEEeCCCCceee---eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 457899999999887643 334678899999999999999986 78999999999 77766665523477888999
Q ss_pred CCCeEEEEe--CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EEECCCcEEEEeCCCCCCCCcceeeeee
Q 012679 235 NNHILTTGG--MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SGGNDNLLHIWDRSMASSNSVTQWLHRL 311 (458)
Q Consensus 235 ~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 311 (458)
++..|++++ .++.+.+|.+.........+..+. .+..++|+|++++|+ +++.|+.+.||++...... ...+
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-----~~~~ 168 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-----ETRL 168 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-----EEEC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc-----ceEc
Confidence 478888888 334555555543222234444433 488999999999887 7788999999996543221 4556
Q ss_pred cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecC---------
Q 012679 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGACLNSVD-TGSQVCALLWNKNERELLSSHGF--------- 380 (458)
Q Consensus 312 ~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~--------- 380 (458)
..+...+.+++|+|++..+++++. .++.+++|++. .+..+..+. +...+..+.|+|++++|+++...
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNSS--RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred ccCCCccccceECCCCCEEEEEec--CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 677888999999999888887765 68889999876 444455443 34568899999999999886532
Q ss_pred CCCcEEEEeCCCcee--eEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679 381 TQNQLTLWKYPSMVK--MAELSGHTSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 381 ~d~~i~iwd~~~~~~--~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
.++.|.+||+.+++. +..+.+|...+.+++|+|+|++|++++.|.
T Consensus 247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 125799999988755 455558888999999999999998887764
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=7.2e-24 Score=201.90 Aligned_cols=269 Identities=12% Similarity=0.179 Sum_probs=194.6
Q ss_pred eEEE-EcCCEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-CeEEEEeCC--Cce--eeEEecCCCc
Q 012679 154 VLAI-ALGSTVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-CQVQLWDST--ANR--QLRTLRGGHR 226 (458)
Q Consensus 154 ~la~-~~d~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-g~v~iwd~~--~~~--~~~~~~~~~~ 226 (458)
++++ +.++.|++|++. +++...+..+ .+...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+.. +
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~- 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-P- 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-C-
Confidence 3444 568999999985 4554444444 356789999999999999998886 899999987 444 3444543 2
Q ss_pred ccEEEEEeC--CCeEEEEe-CCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCC-C
Q 012679 227 SRVGSLAWN--NHILTTGG-MDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSM-A 299 (458)
Q Consensus 227 ~~v~~l~~~--~~~l~sg~-~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~-~ 299 (458)
..+..++|+ +..|++++ .++.|.+||+..+. .....+.. ...+.+++|+|++++|++++ .++.|.+||+.. +
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 377888884 66666555 58899999995221 22333333 34588999999999888887 899999999986 3
Q ss_pred CCCCcceeee--eecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC--CCe--eEEEe---C----CCCeEEE
Q 012679 300 SSNSVTQWLH--RLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT--GAC--LNSVD---T----GSQVCAL 365 (458)
Q Consensus 300 ~~~~~~~~~~--~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~--~~~--~~~~~---~----~~~v~~~ 365 (458)
.. .... .+.. ....+..++|+|++..+++++. .++.|.+||+.. ++. ...+. . ...+..+
T Consensus 163 ~~----~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 163 HL----VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp CE----EEEEEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred ce----eeecccccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 22 1111 2222 3457888999999888888775 789999999953 443 22232 1 1346689
Q ss_pred EEcCCCCeEEEEecCCCCcEEEEeCC----CceeeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 012679 366 LWNKNERELLSSHGFTQNQLTLWKYP----SMVKMAELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNVFG 434 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~~d~~i~iwd~~----~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~ 434 (458)
+|+|++++++++. ..++.|.+|++. ..+.+..+..+.. +.+++|+|+|++|++++ .|+.|.+|++..
T Consensus 237 ~~s~dg~~l~v~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 237 HITPDGRHLYACD-RTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EECTTSSEEEEEE-TTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred EECCCCCEEEEEe-cCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 9999999988653 468999999998 3456666665555 88999999999888887 589999997653
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=9.9e-24 Score=214.10 Aligned_cols=288 Identities=13% Similarity=0.094 Sum_probs=221.6
Q ss_pred cceeeccC--CCeEEEEcCCEEEEEEC--CCCCeeeEEEecCCCCCEEEEEEcC----CCCEEEEEec-CCeEEEEeCCC
Q 012679 144 LNLLDWGS--SNVLAIALGSTVYLWDA--SDGTTSELVTVDDENGPVTSVNWAP----DGRHIAIGLN-NCQVQLWDSTA 214 (458)
Q Consensus 144 ~~~~~~~~--~~~la~~~d~~v~iwd~--~~~~~~~~~~~~~h~~~V~~v~~s~----~g~~la~g~~-dg~v~iwd~~~ 214 (458)
+..+.+++ ..+++++.|+.|++||+ .+++. +.++.. ...+..++|+| ||++|++++. +++|.|||..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~--~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK--VAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE--EEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 44566766 45888888999999999 67665 555653 55689999999 9999999884 89999999999
Q ss_pred ceeeEEecCC---------C-cccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE
Q 012679 215 NRQLRTLRGG---------H-RSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ 281 (458)
Q Consensus 215 ~~~~~~~~~~---------~-~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~ 281 (458)
++.+..+... | ...+.++.++ +.++++...++.|.+||+.+...+......+...+.++.|+|+|++
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~ 337 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY 337 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence 9998887641 2 2378888884 3567788889999999998765433222345677889999999998
Q ss_pred EEEEE-CCCcEEEEeCCCCCCCCcceeeeeecc----cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-------
Q 012679 282 LASGG-NDNLLHIWDRSMASSNSVTQWLHRLEE----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT------- 349 (458)
Q Consensus 282 l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~------- 349 (458)
|++++ .+++|.+||..+++. +..+.. |.+....+ ++|++..+++++. ..|++|.+||+.+
T Consensus 338 l~va~~~~~~v~v~D~~tg~l------~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~ 409 (543)
T 1nir_A 338 FMTAANNSNKVAVIDSKDRRL------SALVDVGKTPHPGRGANF-VHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYA 409 (543)
T ss_dssp EEEEEGGGTEEEEEETTTTEE------EEEEECSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTB
T ss_pred EEEEecCCCeEEEEECCCCeE------EEeeccCCCCCCCCCccc-CCCCCccEEEecc-CCCceEEEEEeCCCCCchhc
Confidence 77655 589999999998765 444442 54433333 4787677887763 2479999999998
Q ss_pred CCeeEEEeCC-CCeEEEEEcCCCCeEEEEe--cC---CCCcEEEEeCCCceee-EEE--------eCCCCcEEEEEEcCC
Q 012679 350 GACLNSVDTG-SQVCALLWNKNERELLSSH--GF---TQNQLTLWKYPSMVKM-AEL--------SGHTSRVLFMAQSPD 414 (458)
Q Consensus 350 ~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~--g~---~d~~i~iwd~~~~~~~-~~~--------~~h~~~V~~l~~spd 414 (458)
+++++++..+ ..+..+.++|++++|++.. +. .++.|.|||+.+++.. ..+ ..+..++..++|+|+
T Consensus 410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 489 (543)
T 1nir_A 410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR 489 (543)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS
T ss_pred CeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC
Confidence 8999999875 5678899999999999953 11 1679999999998877 443 356788999999999
Q ss_pred CCEEEEEe-----CCCcEEEEecCCCCcccccC
Q 012679 415 GCTVASAA-----ADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 415 g~~l~s~s-----~Dg~i~iW~~~~~~~~~~~~ 442 (458)
|+.|+.+. .|+.|.|||..+.+......
T Consensus 490 g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 490 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 99988663 47999999999887765544
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=2.2e-22 Score=192.65 Aligned_cols=267 Identities=15% Similarity=0.124 Sum_probs=206.1
Q ss_pred cceeeccCC--CeEEEEc-------CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCC
Q 012679 144 LNLLDWGSS--NVLAIAL-------GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDST 213 (458)
Q Consensus 144 ~~~~~~~~~--~~la~~~-------d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~ 213 (458)
...+.|+++ .+++++. ++.|++||..+++....... ...+..++|+|+|++++++ ..++.|.+||..
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 345666663 3444442 56899999999987444433 3347889999999966655 457899999999
Q ss_pred CceeeEEecCCCcc--------cEEEEEe--CCCeEEEEe--CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE
Q 012679 214 ANRQLRTLRGGHRS--------RVGSLAW--NNHILTTGG--MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ 281 (458)
Q Consensus 214 ~~~~~~~~~~~~~~--------~v~~l~~--~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~ 281 (458)
+++.+..+..++.. .+.+++| +++.+++++ .++.|.+||+.+... +..+..+...+.+++|+|++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL-KTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE-EEEECCCCTTCCCCEEETTTTE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce-EEEecCCCCccceEEECCCCCE
Confidence 99988888752222 2678888 567666665 478999999987654 5556556666889999999999
Q ss_pred EEEEECCCcEEEEeCCCCCCCCcceeeeeecc----cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679 282 LASGGNDNLLHIWDRSMASSNSVTQWLHRLEE----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357 (458)
Q Consensus 282 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~ 357 (458)
|++++.++.|.+||..++.. +..+.. +...+..++|+|++..++++.. .++.|.+||..+++.+..+.
T Consensus 199 l~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKI------LSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp EEEECTTSEEEEEETTTTEE------EEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCeE------EEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEE
Confidence 99999999999999987754 333332 4556788999999888888765 67999999999999998887
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
.+.. ..+.|+|+++.++++. ..++.|.+||..+++.+..+..+ ..+.+++|+|||++|+.+..++
T Consensus 271 ~~~~-~~~~~s~dg~~l~v~~-~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 271 APES-LAVLFNPARNEAYVTH-RQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CSSC-CCEEEETTTTEEEEEE-TTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred cCCC-ceEEECCCCCEEEEEE-CCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 7654 5699999999877763 46899999999999998888754 4678999999999777766553
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.3e-23 Score=222.04 Aligned_cols=280 Identities=14% Similarity=0.099 Sum_probs=207.3
Q ss_pred ccceeeccCC--CeEEEEc-CC-----EEEEEECCCCCeeeEEEecCCC----------------------CCEEEEEEc
Q 012679 143 YLNLLDWGSS--NVLAIAL-GS-----TVYLWDASDGTTSELVTVDDEN----------------------GPVTSVNWA 192 (458)
Q Consensus 143 ~~~~~~~~~~--~~la~~~-d~-----~v~iwd~~~~~~~~~~~~~~h~----------------------~~V~~v~~s 192 (458)
.+..+.|+++ .+++++. ++ .|++||+.+++...+.....+. ..|.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4667888873 4666776 77 9999999999875555443332 237899999
Q ss_pred CCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc
Q 012679 193 PDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ 268 (458)
Q Consensus 193 ~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~ 268 (458)
|||++|++++. +.|.+||+.++. .+..+.. |...+.+++| +++.|++++ ++.|++||+.++.. ......+..
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~~~~~~~~ 193 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQLTADGST 193 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EECCCCCCS
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EEeccCCcc
Confidence 99999999987 899999999883 3444554 7788999999 578888887 46999999987653 232223332
Q ss_pred c----------------eEeEEEcCCCCEEEEEECCC---------------------------------cEEEEeCCC-
Q 012679 269 E----------------VCGLKWSASGQQLASGGNDN---------------------------------LLHIWDRSM- 298 (458)
Q Consensus 269 ~----------------v~~l~~spd~~~l~sg~~dg---------------------------------~i~iwd~~~- 298 (458)
. +.++.|+|||++|++++.|+ .|.+||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47899999999999998766 788999887
Q ss_pred CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC--CCCCCeEEEEECCCCCeeEEEeCCC-----CeEEEEEcCCC
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG--GGGDRCIKFWNTHTGACLNSVDTGS-----QVCALLWNKNE 371 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~--g~~d~~i~lwd~~~~~~~~~~~~~~-----~v~~~~~s~~~ 371 (458)
+... .+.....|...+..++| |++..+++++. +..+..|++||+.++++...+.... .+..+.|+|++
T Consensus 274 ~~~~----~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 274 AQTQ----WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp CCCE----EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CceE----EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 6541 01111247788999999 99888876642 2346789999999998877665432 45689999999
Q ss_pred CeEEEEecCCCCcEEEEeCC-CceeeEEEeCCCCcEEEE-EEcCCCCEEEEEe-CCC--cEEEEecCC
Q 012679 372 RELLSSHGFTQNQLTLWKYP-SMVKMAELSGHTSRVLFM-AQSPDGCTVASAA-ADE--TLRFWNVFG 434 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd~~-~~~~~~~~~~h~~~V~~l-~~spdg~~l~s~s-~Dg--~i~iW~~~~ 434 (458)
+.+++ +..++.+.||.+. .+. ...+..|...|..+ .|+|||+.|+..+ .|+ .++||++..
T Consensus 349 ~~~~~--~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 349 SILWS--SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CEEEE--ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eEEEE--ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 96665 3467877777765 344 77788888888887 5999999876544 455 899999864
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=9.4e-23 Score=193.66 Aligned_cols=270 Identities=13% Similarity=0.061 Sum_probs=203.0
Q ss_pred CeEEEEcCCEEEEEECCCCCeeeEEEecCCCC-CEEEEEEcCCCCEEEE-EecCCeEEEEeCCCceeeEEecCCC----c
Q 012679 153 NVLAIALGSTVYLWDASDGTTSELVTVDDENG-PVTSVNWAPDGRHIAI-GLNNCQVQLWDSTANRQLRTLRGGH----R 226 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~-~V~~v~~s~~g~~la~-g~~dg~v~iwd~~~~~~~~~~~~~~----~ 226 (458)
.+++++.++.|++||..+++......+. +.. .+.+++|+|+|+++++ +..++.|.+||+.+++.+..+...+ .
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECT-TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcC-CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4678888999999999998774333322 211 4789999999987655 4567899999999999888776433 1
Q ss_pred ccEEEEEeC--CCeEEEEe------------CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 227 SRVGSLAWN--NHILTTGG------------MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 227 ~~v~~l~~~--~~~l~sg~------------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
..+.+++|+ ++.|++++ .++.|.+||+.+... ...+.. ...+.+++|+|++++|+++ ++.|.
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence 256678884 67888876 579999999987654 344433 4567889999999988888 68999
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC-----------------------eEEEEECCC
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR-----------------------CIKFWNTHT 349 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~-----------------------~i~lwd~~~ 349 (458)
+||+.++.. ...+..+.. ...++|+|++..+++++. .++ .|.+||+.+
T Consensus 158 ~~d~~~~~~------~~~~~~~~~-~~~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 158 VMDPEAGTL------VEDKPIQSW-EAETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp EEETTTTEE------EEEECSTTT-TTTTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred EEECCCCcE------eeeeecccc-CCCceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 999987654 334433321 113378998887766543 333 478999999
Q ss_pred CCeeEEE---eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679 350 GACLNSV---DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADET 426 (458)
Q Consensus 350 ~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 426 (458)
++.. .+ .....+..++|+|++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++.|+.
T Consensus 229 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~ 302 (337)
T 1pby_B 229 GEMA-MREVRIMDVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp CCEE-EEEEEECSSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSE
T ss_pred CCce-EeecCCCCCceeeEEECCCCCEEEEe----CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCc
Confidence 9875 32 234568899999999999885 689999999999988877643 45789999999999999999999
Q ss_pred EEEEecCCCCcccccC
Q 012679 427 LRFWNVFGAPQVISKS 442 (458)
Q Consensus 427 i~iW~~~~~~~~~~~~ 442 (458)
|.+||+.+++.+....
T Consensus 303 i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 303 LAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEEETTTCCEEEEEE
T ss_pred EEEEECcCCcEEEEEE
Confidence 9999998887665443
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=5.8e-24 Score=223.97 Aligned_cols=281 Identities=12% Similarity=0.160 Sum_probs=200.5
Q ss_pred cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC---CEEEEEEcCCCCEEEEEecC---------CeEEEE
Q 012679 144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENG---PVTSVNWAPDGRHIAIGLNN---------CQVQLW 210 (458)
Q Consensus 144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~---~V~~v~~s~~g~~la~g~~d---------g~v~iw 210 (458)
...+.|++ +.+++.+.||.|++||+.+++.. ..+..|.. .|.+++|||||++|++++.+ +.|.+|
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~--~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTST--VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCE--EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEE--EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 34567877 45666678999999999999874 34455554 49999999999999999874 788999
Q ss_pred eCCCceeeEEecC--CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc-----------------
Q 012679 211 DSTANRQLRTLRG--GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE----------------- 269 (458)
Q Consensus 211 d~~~~~~~~~~~~--~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~----------------- 269 (458)
|+.+++. ..+.. .|...+..++| +|+.|+.++. +.|++||+.++.. ......+...
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEecc
Confidence 9998876 33332 24455788888 5788888876 7999999987654 3333333332
Q ss_pred -eEeEEEcCCCCEEEEEECCC----------------------------------cEEEEeCCCCCCCCcceeeeeecc-
Q 012679 270 -VCGLKWSASGQQLASGGNDN----------------------------------LLHIWDRSMASSNSVTQWLHRLEE- 313 (458)
Q Consensus 270 -v~~l~~spd~~~l~sg~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~- 313 (458)
+.+++|+|||++|++++.|+ .|++||+.++.. ...+..
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~------~~~l~~~ 247 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH------DLEMMPP 247 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC------CEECCCC
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce------eEEeeCC
Confidence 37899999999999987653 799999887664 233333
Q ss_pred -----cccceeEEEecCCCCcEEEEeC-CCCCCeEEEEECCCCCeeEEEeC--CCCe----EEEEEcCCCCeEEEEecCC
Q 012679 314 -----HTSAVKAIAWCPFQSNLLATGG-GGGDRCIKFWNTHTGACLNSVDT--GSQV----CALLWNKNERELLSSHGFT 381 (458)
Q Consensus 314 -----h~~~v~~l~~~p~~~~ll~s~~-g~~d~~i~lwd~~~~~~~~~~~~--~~~v----~~~~~s~~~~~l~~~~g~~ 381 (458)
+...+..++|+|++..+++... +..+..|++||+.++++...+.. ...+ ..+.|+|+|+.|+.+.+..
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 3678899999999875544432 22456899999999987766532 2223 3789999999888753435
Q ss_pred CC------cEEEEeC-CCce--eeEEEeCCCCcEEE-EEEcCCCCEEEEEeCC---CcEEEEecCCC
Q 012679 382 QN------QLTLWKY-PSMV--KMAELSGHTSRVLF-MAQSPDGCTVASAAAD---ETLRFWNVFGA 435 (458)
Q Consensus 382 d~------~i~iwd~-~~~~--~~~~~~~h~~~V~~-l~~spdg~~l~s~s~D---g~i~iW~~~~~ 435 (458)
++ .|.+||. ..+. ....+..+...+.. ++|+|||+.|+..+.+ +.+++|++...
T Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 56 5777773 4443 14455544444554 6999999999876665 78999998643
No 137
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=2.7e-23 Score=193.59 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=140.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--cCCeEEEEeC-CCceeeEEecCCCcccEEEEEe-----CCCeEEEEeCCCcEEEEE
Q 012679 181 DENGPVTSVNWAPDGRHIAIGL--NNCQVQLWDS-TANRQLRTLRGGHRSRVGSLAW-----NNHILTTGGMDGLIINND 252 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~la~g~--~dg~v~iwd~-~~~~~~~~~~~~~~~~v~~l~~-----~~~~l~sg~~dg~i~vwd 252 (458)
+|...|..+ ++|+.+.+++ .|+.|++|++ .+++.+..+.. |...+..++| ++.+|++|+.|++|++||
T Consensus 134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~-~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWD 209 (356)
T 2w18_A 134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL-MPPEETILTFAEVQGMQEALLGTTIMNNIVIWN 209 (356)
T ss_dssp EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE-CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEE
T ss_pred CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeecc-CCCceeeEEeeccCCCCceEEEecCCCcEEEEE
Confidence 344344443 4666555543 5888999998 44777776665 7766666665 459999999999999999
Q ss_pred ccCCCeeEEEEcccc---cceEeEEEcCCCCEE------------EEEECCCcEEEEeCCCCCCCCcceeeeee-----c
Q 012679 253 VRVRDHIVETYRGHN---QEVCGLKWSASGQQL------------ASGGNDNLLHIWDRSMASSNSVTQWLHRL-----E 312 (458)
Q Consensus 253 ~~~~~~~~~~~~~h~---~~v~~l~~spd~~~l------------~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-----~ 312 (458)
+++++. +.++.+|. ..+++++|+|+|.++ ++|+.|++|++||..++.. +..+ .
T Consensus 210 l~TGk~-l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~------l~v~~~~~p~ 282 (356)
T 2w18_A 210 LKTGQL-LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS------VGVMLYCLPP 282 (356)
T ss_dssp TTTCCE-EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE------EEEEEECCCT
T ss_pred CCCCcE-EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE------EEEEEeeccC
Confidence 998875 56676543 467788999999986 6688899999999987754 3222 3
Q ss_pred ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CC-eEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 313 EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 313 ~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~-v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
+|...+.+..++ ..++++++ .|++|+|||+.+++++.++..+ .. +..++|+|++++|++ |+.|++|+|||+
T Consensus 283 Gh~~~~lsg~~s---g~~lASgS--~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIklWd~ 355 (356)
T 2w18_A 283 GQAGRFLEGDVK---DHCAAAIL--TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIFVYHY 355 (356)
T ss_dssp TCCCCEEEEEEE---TTEEEEEE--TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE--ECTTSCEEEEEE
T ss_pred CCcceeEccccC---CCEEEEEc--CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE--EECCCcEEEecC
Confidence 555554444443 45677776 8999999999999999999754 33 446899999999998 669999999985
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.6e-22 Score=212.51 Aligned_cols=278 Identities=11% Similarity=0.105 Sum_probs=204.9
Q ss_pred cccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-----ce
Q 012679 142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-----NR 216 (458)
Q Consensus 142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-----~~ 216 (458)
..+..++|+++..++.+.++.|++||+.+++.. .+..+...+.+++|+|||++||++ .++.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVT---YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTTTEEE---EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCCCceE---EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 357789999888777788999999999988753 334456778999999999999985 789999999998 77
Q ss_pred eeEEecCCCccc--------------EEEEEe--CCCeEEEEe---------------------------------CCCc
Q 012679 217 QLRTLRGGHRSR--------------VGSLAW--NNHILTTGG---------------------------------MDGL 247 (458)
Q Consensus 217 ~~~~~~~~~~~~--------------v~~l~~--~~~~l~sg~---------------------------------~dg~ 247 (458)
....... +... +.+++| +++.|++++ .+..
T Consensus 158 ~~~~~~~-~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 AIAVTID-GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CEESCSC-CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred cEEeccC-CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 6654443 3332 478888 578888887 4467
Q ss_pred EEEEEccCCCeeEEEE-cccccceEeEEEcCCCCEEEEEECCC-----cEEEEeCCCCCCCCcceeeeeec--ccc---c
Q 012679 248 IINNDVRVRDHIVETY-RGHNQEVCGLKWSASGQQLASGGNDN-----LLHIWDRSMASSNSVTQWLHRLE--EHT---S 316 (458)
Q Consensus 248 i~vwd~~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~--~h~---~ 316 (458)
|++||+.++....... ..|...+.+++|+|||++|++++.++ .|++||+.++.. ...+. .+. .
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~------~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF------VRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE------EEEEEEEECSSCCC
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce------eeEEEEccCCCeEC
Confidence 9999998765321111 25677899999999999999988775 899999987732 11111 122 1
Q ss_pred ceeEEEecC--CCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEeC-CCCeEE-EEEcCCCCeEEEEecCCCC----cEEE
Q 012679 317 AVKAIAWCP--FQSNLLATGGGGGDRCIKFWNTH-TGACLNSVDT-GSQVCA-LLWNKNERELLSSHGFTQN----QLTL 387 (458)
Q Consensus 317 ~v~~l~~~p--~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~~-~~~v~~-~~~s~~~~~l~~~~g~~d~----~i~i 387 (458)
.+..++|+| ++. +++++. .|+.+++|++. ++..+..+.. ...+.. +.|+|+++.|+++.. .++ .|..
T Consensus 311 ~~~~~~~sp~~dg~-~l~~~~--~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~-~~~~~~~~l~~ 386 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQ-FIWQSR--RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST-EASPLERHFYC 386 (706)
T ss_dssp CCSCCEECTTCSSE-EEEEEC--TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES-SSCTTCBEEEE
T ss_pred ccCCceeecCCCCE-EEEEEc--cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec-CCCCceEEEEE
Confidence 346789999 876 556655 78888999876 5666666644 345666 799999999887654 343 6777
Q ss_pred EeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEecCCCC
Q 012679 388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD----ETLRFWNVFGAP 436 (458)
Q Consensus 388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D----g~i~iW~~~~~~ 436 (458)
||..+++ ...+. |...+..++|+|||++|+.++.+ +.|++||+.++.
T Consensus 387 ~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 387 IDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 7777765 33443 67779999999999998876544 469999998765
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.9e-21 Score=186.22 Aligned_cols=266 Identities=11% Similarity=0.075 Sum_probs=185.8
Q ss_pred CCEEEEEE--CCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEeCCCce--eeEEecCCCcccEEEE
Q 012679 160 GSTVYLWD--ASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN---NCQVQLWDSTANR--QLRTLRGGHRSRVGSL 232 (458)
Q Consensus 160 d~~v~iwd--~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~---dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l 232 (458)
++.|++|+ ..+++...+.... +...+..++|+|||+ |++++. ++.|.+||+.+++ .+..+.. +...+..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~-~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~ 91 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLA-ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYV 91 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEE-ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeee-ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEE
Confidence 34566665 4566665444333 456678899999999 555554 6899999997765 3344333 56677778
Q ss_pred Ee--CCCeEEEEe-CCCcEEEEEccCCCee--EEEEcc---------cccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 233 AW--NNHILTTGG-MDGLIINNDVRVRDHI--VETYRG---------HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 233 ~~--~~~~l~sg~-~dg~i~vwd~~~~~~~--~~~~~~---------h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
+| ++++|++++ .++.|.+|++...... +..+.. +...+.+++|+|||+++++...++.|.+||+..
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 88 577787777 7899999999643321 222211 123488899999999666666788999999983
Q ss_pred CCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC--CCe--eEEEeC-C------CCeEEEE
Q 012679 299 ASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT--GAC--LNSVDT-G------SQVCALL 366 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~--~~~--~~~~~~-~------~~v~~~~ 366 (458)
... ......+.. ....+..++|+|++..+++++. .++.|.+|++.. ++. +..+.. . ..+..++
T Consensus 172 ~g~---~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 172 AGQ---LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp TSC---EEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred CCc---EEEeeeEEcCCCCCCceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 222 111222222 2335778999999888888776 789999999874 543 223322 1 3488899
Q ss_pred EcCCCCeEEEEecCCCCcEEEEeCC---CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEecCC
Q 012679 367 WNKNERELLSSHGFTQNQLTLWKYP---SMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-ETLRFWNVFG 434 (458)
Q Consensus 367 ~s~~~~~l~~~~g~~d~~i~iwd~~---~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g~i~iW~~~~ 434 (458)
|+|+|++|+++. ..++.|.+|++. ..+.+..+..+...+..++|+|||++|++++.+ +.|.+|++..
T Consensus 247 ~spdG~~l~v~~-~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 247 LSHDGHFLYVSN-RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp ECTTSCEEEEEE-ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ECCCCCEEEEEe-CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 999999887653 358899999997 446667777777778999999999998888765 8999996643
No 140
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=1e-20 Score=182.13 Aligned_cols=269 Identities=11% Similarity=0.105 Sum_probs=188.9
Q ss_pred CCEEEEEEC--CCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC----CeEEEEeCCC--ce--eeEEecCCCcccE
Q 012679 160 GSTVYLWDA--SDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN----CQVQLWDSTA--NR--QLRTLRGGHRSRV 229 (458)
Q Consensus 160 d~~v~iwd~--~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d----g~v~iwd~~~--~~--~~~~~~~~~~~~v 229 (458)
++.|++|.+ .+++...+... +...+..++|+|||++|++++.+ |.|.+|++.. ++ .+..... +....
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~-~~~~p 102 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT-MGADP 102 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-SSSCE
T ss_pred CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-CCCCc
Confidence 467888865 66777666655 56778899999999999999886 7999998765 43 2333333 55567
Q ss_pred EEEEeCCCeEEEEe-CCCcEEEEEccCCCeeE---EE--Ecc--------cccceEeEEEcCCCCEEEEEE-CCCcEEEE
Q 012679 230 GSLAWNNHILTTGG-MDGLIINNDVRVRDHIV---ET--YRG--------HNQEVCGLKWSASGQQLASGG-NDNLLHIW 294 (458)
Q Consensus 230 ~~l~~~~~~l~sg~-~dg~i~vwd~~~~~~~~---~~--~~~--------h~~~v~~l~~spd~~~l~sg~-~dg~i~iw 294 (458)
..++++++.|++++ .++.|.+|++.....+. .. ..+ +...+.+++|+|||++|++++ .++.|.+|
T Consensus 103 ~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~ 182 (361)
T 3scy_A 103 CYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF 182 (361)
T ss_dssp EEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence 77888888777766 67899999997544221 11 111 123457899999999776655 48899999
Q ss_pred eCCCCCC----C-Ccce--eeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--eEEEeC----CCC
Q 012679 295 DRSMASS----N-SVTQ--WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--LNSVDT----GSQ 361 (458)
Q Consensus 295 d~~~~~~----~-~~~~--~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~~----~~~ 361 (458)
++..... . .... .......+...+..++|+|++..++++.. .++.|.+||+.+++. +..+.. ...
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~ 260 (361)
T 3scy_A 183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNAQG 260 (361)
T ss_dssp EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCCCC
T ss_pred EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCCCC
Confidence 9875442 1 0000 01112234456789999999888888765 689999999987754 333322 234
Q ss_pred eEEEEEcCCCCeEEEEecCCCCcEEEEeCC--Cce--eeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 012679 362 VCALLWNKNERELLSSHGFTQNQLTLWKYP--SMV--KMAELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNVFG 434 (458)
Q Consensus 362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~--~~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~ 434 (458)
...++|+|++++|+++....++.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|++..
T Consensus 261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 679999999999987643226899999985 333 5555554 55688999999999988887 678999987753
No 141
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=2.8e-21 Score=190.84 Aligned_cols=290 Identities=13% Similarity=0.135 Sum_probs=189.2
Q ss_pred eeeCCCCCCccccceeeccC-CCeEEEEcCCEEEEEECCCC-----------Cee---eEEEecCCCCCEEEEEEcCCCC
Q 012679 132 TLDAPDLVDDYYLNLLDWGS-SNVLAIALGSTVYLWDASDG-----------TTS---ELVTVDDENGPVTSVNWAPDGR 196 (458)
Q Consensus 132 ~l~~~~~~~d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~-----------~~~---~~~~~~~h~~~V~~v~~s~~g~ 196 (458)
+++.+....+..++++++++ ..+++++....+++|+.... ... ....+ .+...|++++|+|+|+
T Consensus 27 i~~~~~~~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~ 105 (434)
T 2oit_A 27 IFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNL 105 (434)
T ss_dssp CSCCCSSCCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSC
T ss_pred ecCCccccCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCC
Confidence 33333333345688899987 44555555445999874310 110 01112 3467899999999999
Q ss_pred EEE----EEecCCeEEEEeCCCc--------ee---eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCe
Q 012679 197 HIA----IGLNNCQVQLWDSTAN--------RQ---LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDH 258 (458)
Q Consensus 197 ~la----~g~~dg~v~iwd~~~~--------~~---~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~ 258 (458)
+|| +|+.|+.|+|||+.++ +. +..+.+ |...|.+++|+ +.+|++++.||.|++||++++..
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 999 6788999999998765 22 333444 89999999995 56899999999999999998754
Q ss_pred eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-------ccccceeEEEecCCCCcEE
Q 012679 259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-------EHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 259 ~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~ll 331 (458)
.....+|...|++++|+|+|++|++|+.||.|++||.+ +.. ...+. .|...|.+++|++++..++
T Consensus 185 -~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~------~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 185 -VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE------KKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp -EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE------EEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred -eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc------cccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 44556789999999999999999999999999999988 322 22222 2345899999999655555
Q ss_pred EEeCCCCC------CeEEEEECCCCC-----eeEEE-eC-----C--CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 332 ATGGGGGD------RCIKFWNTHTGA-----CLNSV-DT-----G--SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 332 ~s~~g~~d------~~i~lwd~~~~~-----~~~~~-~~-----~--~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
+... .| ..+++|++.+.+ ....+ .. . .+...+.+-++.+.++++++ ..+.|.|+....
T Consensus 257 ~~~~--~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~-~s~dv~vl~~~~ 333 (434)
T 2oit_A 257 VYAA--ADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA-ASTEVSILARQS 333 (434)
T ss_dssp EEEE--TTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET-TCSBCEEEEECT
T ss_pred EEcc--CCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC-CCCceeEEEecC
Confidence 4443 33 249999998652 11111 11 1 11223444577777777643 455555555322
Q ss_pred c---eeeEEE----------e--CCCCcEEEEEEc---------------CCCCEEEEEeCCCcEEEEecCC
Q 012679 393 M---VKMAEL----------S--GHTSRVLFMAQS---------------PDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 393 ~---~~~~~~----------~--~h~~~V~~l~~s---------------pdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
. -....+ . +....+..+++. |--..|..-+.||.|..|.+..
T Consensus 334 ~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 334 DQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp TSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred CCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 1 000111 0 112223444442 1225678889999999999987
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=5.7e-21 Score=181.76 Aligned_cols=266 Identities=11% Similarity=0.057 Sum_probs=185.2
Q ss_pred ccceeeccC-CC-eEEEEcC-CEEEEEECC--CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEeC---C
Q 012679 143 YLNLLDWGS-SN-VLAIALG-STVYLWDAS--DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-NCQVQLWDS---T 213 (458)
Q Consensus 143 ~~~~~~~~~-~~-~la~~~d-~~v~iwd~~--~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~---~ 213 (458)
.+..+.|++ ++ +++++.+ +.|.+|++. +++...+..+..+. .+.+++|+|+|++|++++. ++.|.+||+ .
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~ 117 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 117 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc
Confidence 355678876 33 6666665 899999998 77766666666544 7899999999998877765 889999999 4
Q ss_pred CceeeEEecCCCcccEEEEEeC--CCeEEEEe-CCCcEEEEEccCCCeeEE----EEc-ccccceEeEEEcCCCCEEEEE
Q 012679 214 ANRQLRTLRGGHRSRVGSLAWN--NHILTTGG-MDGLIINNDVRVRDHIVE----TYR-GHNQEVCGLKWSASGQQLASG 285 (458)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~-~dg~i~vwd~~~~~~~~~----~~~-~h~~~v~~l~~spd~~~l~sg 285 (458)
+.+.+..+. ....+.+++|+ +..|++++ .++.|.+||+.+...... ... .....+.+++|+|++++|+++
T Consensus 118 ~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~ 195 (343)
T 1ri6_A 118 PVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV 195 (343)
T ss_dssp EEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred ccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE
Confidence 444555554 33457888884 56777776 899999999987332221 222 234578889999999977665
Q ss_pred E-CCCcEEEEeCCCCCCCCc-ceeeeeeccc---ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC--C--CCeeEEE
Q 012679 286 G-NDNLLHIWDRSMASSNSV-TQWLHRLEEH---TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH--T--GACLNSV 356 (458)
Q Consensus 286 ~-~dg~i~iwd~~~~~~~~~-~~~~~~~~~h---~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~--~~~~~~~ 356 (458)
+ .++.|.+||+........ ......+... ...+..++|+|++..+++++. .++.|.+||+. + .+.+..+
T Consensus 196 ~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 196 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEE
T ss_pred eCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeee
Confidence 5 789999999964222110 1111111111 235668999999888887776 78999999998 3 3455556
Q ss_pred eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC--CCc--eeeEEEeCCCCcEEEEEEcCCC
Q 012679 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY--PSM--VKMAELSGHTSRVLFMAQSPDG 415 (458)
Q Consensus 357 ~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~--~~~--~~~~~~~~h~~~V~~l~~spdg 415 (458)
.....+..++|+|+++.++++. ..++.|.+|++ .++ +.+..+... ....+++|.|+.
T Consensus 274 ~~~~~~~~~~~s~dg~~l~~~~-~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 274 PTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp ECSSSCCCEEECTTSSEEEEEC-TTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred cCCCccceEEECCCCCEEEEec-CCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 6666689999999999988863 36799999954 454 344555442 345677777654
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=6.1e-22 Score=208.00 Aligned_cols=278 Identities=12% Similarity=0.132 Sum_probs=192.5
Q ss_pred ceeeccCCCeEEEEcCCEEEEEECCCCCe--eeEEEecCC--------------CCCEEEEEEcCCCCEEEEEecCCeEE
Q 012679 145 NLLDWGSSNVLAIALGSTVYLWDASDGTT--SELVTVDDE--------------NGPVTSVNWAPDGRHIAIGLNNCQVQ 208 (458)
Q Consensus 145 ~~~~~~~~~~la~~~d~~v~iwd~~~~~~--~~~~~~~~h--------------~~~V~~v~~s~~g~~la~g~~dg~v~ 208 (458)
+.+.|.++.+++.+.++ | +||+.+++. ..+...... ...|.+++|+|| ++++.+ .++.|+
T Consensus 29 ~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~ 104 (706)
T 2z3z_A 29 VGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLV 104 (706)
T ss_dssp TTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEE
T ss_pred CCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEE
Confidence 44677756677777767 8 999999986 444432211 156999999999 666666 458999
Q ss_pred EEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccC-----CCeeEEEEcccccc------------
Q 012679 209 LWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRV-----RDHIVETYRGHNQE------------ 269 (458)
Q Consensus 209 iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-----~~~~~~~~~~h~~~------------ 269 (458)
+||+.+++...... +...+.+++| +++.|+++ .++.|++||+.+ +.. ......+...
T Consensus 105 ~~d~~~~~~~~l~~--~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~-~~~~~~~~~~~~~g~~~~~ee~ 180 (706)
T 2z3z_A 105 GFDMLARKVTYLFD--TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA-IAVTIDGTETLVYGQAVHQREF 180 (706)
T ss_dssp EEETTTTEEEEEEC--CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC-EESCSCCBTTEEESSCCGGGCT
T ss_pred EEECCCCceEEccC--CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc-EEeccCCCCCeEcccchhhhhc
Confidence 99999887655443 6667888888 46788884 689999999987 543 2323333332
Q ss_pred --eEeEEEcCCCCEEEEEE---------------------------------CCCcEEEEeCCCCCCCCcceeeeeeccc
Q 012679 270 --VCGLKWSASGQQLASGG---------------------------------NDNLLHIWDRSMASSNSVTQWLHRLEEH 314 (458)
Q Consensus 270 --v~~l~~spd~~~l~sg~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~h 314 (458)
+.++.|+|||++|++++ .+..|++||+.++... .+.....|
T Consensus 181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~----~~~~~~~~ 256 (706)
T 2z3z_A 181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV----YLQTGEPK 256 (706)
T ss_dssp TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE----ECCCCSCT
T ss_pred CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE----eeccCCCC
Confidence 48999999999999987 4578999999876531 11112256
Q ss_pred ccceeEEEecCCCCcEEEEeC--CCCCCeEEEEECCCCCeeEEEe---CCC---CeEEEEEcC--CCCeEEEEecCCCCc
Q 012679 315 TSAVKAIAWCPFQSNLLATGG--GGGDRCIKFWNTHTGACLNSVD---TGS---QVCALLWNK--NERELLSSHGFTQNQ 384 (458)
Q Consensus 315 ~~~v~~l~~~p~~~~ll~s~~--g~~d~~i~lwd~~~~~~~~~~~---~~~---~v~~~~~s~--~~~~l~~~~g~~d~~ 384 (458)
...+.+++|+|++..++++.. +..+..|++||+.+++....+. ... .+..+.|+| +++++++ +..++.
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~--~~~~g~ 334 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ--SRRDGW 334 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE--ECTTSS
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE--EccCCc
Confidence 778999999999887776542 0111389999999994443332 121 246789999 9997776 446788
Q ss_pred EEEEeCC-CceeeEEEeCCCCcEEE-EEEcCCCCEEEEEeCC-C----cEEEEecCCCC
Q 012679 385 LTLWKYP-SMVKMAELSGHTSRVLF-MAQSPDGCTVASAAAD-E----TLRFWNVFGAP 436 (458)
Q Consensus 385 i~iwd~~-~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~s~D-g----~i~iW~~~~~~ 436 (458)
++||++. ++..+..+..|...+.. ++|+|||+.|+.++.+ + .|..|++.++.
T Consensus 335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 8999886 67777888888888877 7999999988766654 3 55666665543
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=1.7e-21 Score=205.73 Aligned_cols=274 Identities=11% Similarity=0.133 Sum_probs=200.7
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCC---CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDG---TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~---~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
.+..++|++ +..++.+.++.|++||+.++ +. ..+..|...+.+++|+|||++||+++. +.|++||+.+++..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~---~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV---RQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQM 185 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSC---CBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEE
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceE---EEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEE
Confidence 366788988 45666666699999999988 54 345667788999999999999999874 59999999988766
Q ss_pred EEecCCCccc----------------EEEEEe--CCCeEEEEeCCC---------------------------------c
Q 012679 219 RTLRGGHRSR----------------VGSLAW--NNHILTTGGMDG---------------------------------L 247 (458)
Q Consensus 219 ~~~~~~~~~~----------------v~~l~~--~~~~l~sg~~dg---------------------------------~ 247 (458)
..... +... +.+++| +++.|++++.|+ .
T Consensus 186 ~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 186 QLTAD-GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp ECCCC-CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EeccC-CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 55443 3322 467888 578888887765 7
Q ss_pred EEEEEccC-CCeeEEEEc--ccccceEeEEEcCCCCEEEEEEC-----CCcEEEEeCCCCCCCCcceeeeeeccccc---
Q 012679 248 IINNDVRV-RDHIVETYR--GHNQEVCGLKWSASGQQLASGGN-----DNLLHIWDRSMASSNSVTQWLHRLEEHTS--- 316 (458)
Q Consensus 248 i~vwd~~~-~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--- 316 (458)
|.+||+.+ +.. ..... .|...+..++| |||++|++++. +..|++||+.++.. ...+..+..
T Consensus 265 l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~~ 336 (741)
T 2ecf_A 265 LGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ------RVLAHETSPTWV 336 (741)
T ss_dssp EEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE------EEEEEEECSSCC
T ss_pred EEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce------EEEEEcCCCCcC
Confidence 88999987 653 22222 47788999999 99999987764 56899999988764 333333332
Q ss_pred -ceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEe-CCCCeEEE-EEcCCCCeEEEEecCCCC--cEEEEeC
Q 012679 317 -AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGACLNSVD-TGSQVCAL-LWNKNERELLSSHGFTQN--QLTLWKY 390 (458)
Q Consensus 317 -~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~-~~~~v~~~-~~s~~~~~l~~~~g~~d~--~i~iwd~ 390 (458)
.+..++|+|++. ++++++ .|+.++||.+. ++. ...+. +...+..+ .|+|+++.++.+.. .++ .++||++
T Consensus 337 ~~~~~~~~spdg~-~~~~~~--~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~-~~~~~~~~l~~~ 411 (741)
T 2ecf_A 337 PLHNSLRFLDDGS-ILWSSE--RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG-IESARESQIYAV 411 (741)
T ss_dssp CCCSCCEECTTSC-EEEEEC--TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC-SSCTTCBEEEEE
T ss_pred CcCCceEECCCCe-EEEEec--CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe-CCCCceEEEEEE
Confidence 456899999987 667665 78877777665 344 44443 34567777 59999998876533 444 8999998
Q ss_pred CC-ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEecCCC
Q 012679 391 PS-MVKMAELSGHTSRVLFMAQSPDGCTVASAAAD----ETLRFWNVFGA 435 (458)
Q Consensus 391 ~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D----g~i~iW~~~~~ 435 (458)
.. +.....+.. ...+..++|+|||++|+....+ ..+.+|+..+.
T Consensus 412 ~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 412 PLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp ETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 64 555666665 6678899999999998876554 46888987543
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=2.8e-20 Score=177.90 Aligned_cols=243 Identities=7% Similarity=0.026 Sum_probs=189.3
Q ss_pred CCCEEEEEEcCCCCEEEEEec-------CCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCC-eEEEEeCCCcEEEEE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLN-------NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNH-ILTTGGMDGLIINND 252 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~-------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~-~l~sg~~dg~i~vwd 252 (458)
...+..++|+|+|+++++++. ++.|.+||..+++.+..+.. ...+..++| +++ +++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 346889999999999988874 56899999999998888874 334566666 566 455556689999999
Q ss_pred ccCCCeeEEEEccccc---------ceEeEEEcCCCCEEEEEE--CCCcEEEEeCCCCCCCCcceeeeeecccccceeEE
Q 012679 253 VRVRDHIVETYRGHNQ---------EVCGLKWSASGQQLASGG--NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI 321 (458)
Q Consensus 253 ~~~~~~~~~~~~~h~~---------~v~~l~~spd~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 321 (458)
+.+++. +..+..+.. .+.++.|+|+++++++++ .++.|.+||..+.+. +..+..+...+..+
T Consensus 118 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 118 AKTGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL------KTAIQNTGKMSTGL 190 (353)
T ss_dssp TTTCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE------EEEECCCCTTCCCC
T ss_pred CCCCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce------EEEecCCCCccceE
Confidence 988764 344443322 278899999999887776 478999999987655 55555456668899
Q ss_pred EecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee
Q 012679 322 AWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM 396 (458)
Q Consensus 322 ~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~ 396 (458)
+|+|++..++++. .++.|.+||..+++.+..+.. ...+..++|+|+++.++++. ..++.|.+||..+++.+
T Consensus 191 ~~s~dg~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 191 ALDSEGKRLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD-SKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp EEETTTTEEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE-SSSSEEEEEETTTCCEE
T ss_pred EECCCCCEEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe-CCCCEEEEEECCCCcEE
Confidence 9999887777654 689999999999999888765 33578899999999888764 35689999999999988
Q ss_pred EEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCcccc
Q 012679 397 AELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 397 ~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~~~~~~~ 440 (458)
..+..... ..++|+|+|++++.++ .++.|.+||+.+++....
T Consensus 267 ~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 267 AKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp EEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 88775442 5799999999665555 689999999987765443
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=4.8e-21 Score=177.85 Aligned_cols=224 Identities=11% Similarity=0.140 Sum_probs=170.5
Q ss_pred EecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccC-CCeeEEEEccc-ccceEeEEEc
Q 012679 201 GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRV-RDHIVETYRGH-NQEVCGLKWS 276 (458)
Q Consensus 201 g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~h-~~~v~~l~~s 276 (458)
++.++.|++||+.+++...... |...|.+++|+ +.+|++++ ++.|++||+.+ +.. ......+ ...+.+++|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQ--TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEE--ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred CCcceeEEEEeCCCCceeeecc--CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence 4578899999999988765444 88899999994 67888876 78999999987 553 3444444 4678999999
Q ss_pred CCCCEEEEEE--CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC--CCCCe
Q 012679 277 ASGQQLASGG--NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT--HTGAC 352 (458)
Q Consensus 277 pd~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~--~~~~~ 352 (458)
|++++|++++ .++.+.||.+...... ...+..+ ..+..++|+|++..+++++. .|+.+++|++ .+++.
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~-~~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-----PRLMTKN-LPSYWHGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-----CEECCSS-SSEEEEEECTTSSEEEEEEE--ETTEEEEEEEETTTCCE
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-----eEEeecC-CCccceEECCCCCEEEEEEC--CCCceEEEEEECCCCcc
Confidence 9999999999 3345555554332211 2333333 34888999999888887765 7898999985 45555
Q ss_pred eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC-CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-------
Q 012679 353 LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP-SMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD------- 424 (458)
Q Consensus 353 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~-~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D------- 424 (458)
.........+..+.|+|+++.++++. ..++.+.||++. ....+..+..|...+..++|+|+|++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNS-SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEE-CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred eEcccCCCccccceECCCCCEEEEEe-cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 44445567899999999999888763 357889999886 566677788888889999999999999988876
Q ss_pred ----CcEEEEecCCCCc
Q 012679 425 ----ETLRFWNVFGAPQ 437 (458)
Q Consensus 425 ----g~i~iW~~~~~~~ 437 (458)
+.|.+||+.+++.
T Consensus 245 ~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp SSEEEEEEEEETTSCSC
T ss_pred ccCceEEEEEecCCCCc
Confidence 5699999987654
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=8e-21 Score=181.29 Aligned_cols=239 Identities=10% Similarity=0.044 Sum_probs=181.1
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeE-EEEeCCCcEEEEEccCCCeeEEEEc
Q 012679 188 SVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHIL-TTGGMDGLIINNDVRVRDHIVETYR 264 (458)
Q Consensus 188 ~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~ 264 (458)
.+++++++.++++++.++.|.+||+.+++.+..+..+....+..++|+ ++.+ +++..++.|.+||+.++.. ...+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 456788899999999999999999999999888875332256777884 5544 5666789999999987654 33333
Q ss_pred -cc-----ccceEeEEEcCCCCEEEEEECC------------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679 265 -GH-----NQEVCGLKWSASGQQLASGGND------------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 265 -~h-----~~~v~~l~~spd~~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.++.... .+..+. +...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~-~~~~~~~~~~s~d 158 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK---PVRTFP-MPRQVYLMRAADD 158 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC---CSEEEE-CCSSCCCEEECTT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc---eeeecc-CCCcccceeECCC
Confidence 22 2347889999999999998865 899999988744311 122332 3346889999999
Q ss_pred CCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC----------------------------------------------
Q 012679 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS---------------------------------------------- 360 (458)
Q Consensus 327 ~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~---------------------------------------------- 360 (458)
+. +++. + . .|.+||..+++.+..+....
T Consensus 159 g~-l~~~-~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 159 GS-LYVA-G--P--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp SC-EEEE-S--S--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred Cc-EEEc-c--C--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 87 6663 2 2 39999999998877665332
Q ss_pred -----------------------CeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC
Q 012679 361 -----------------------QVCALLWNK-NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416 (458)
Q Consensus 361 -----------------------~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 416 (458)
.+..++|+| ++++++++ ++.|.+||+.+++.+..+... ..+.+++|+|+|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGD 307 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSS
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCC-CCccceEECCCCC
Confidence 244667789 99998885 789999999999988877643 4577999999999
Q ss_pred EEEEEeCCCcEEEEecCCCCcccccC
Q 012679 417 TVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 417 ~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
+|++++.++.|.+||+.+.+.+....
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCeEEEEeccccceeeeee
Confidence 99888889999999998877665543
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.5e-20 Score=176.96 Aligned_cols=235 Identities=9% Similarity=0.083 Sum_probs=177.1
Q ss_pred EEcCCCCE-EEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC-CCcEEEEEccCCCeeEEEEcc
Q 012679 190 NWAPDGRH-IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM-DGLIINNDVRVRDHIVETYRG 265 (458)
Q Consensus 190 ~~s~~g~~-la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~ 265 (458)
.|.+++.+ ++++..++.|.+||+.+++.+..+.. +...+ +++| +++.+++++. ++.|.+||+.++......+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL-GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC-CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc-cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 45555555 66777889999999999999888875 45555 8888 4665655554 899999999887653555666
Q ss_pred cccceEeEEEcCCCCEEEEEECCC---cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe-
Q 012679 266 HNQEVCGLKWSASGQQLASGGNDN---LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC- 341 (458)
Q Consensus 266 h~~~v~~l~~spd~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~- 341 (458)
+.....+++|+|++++|+++..++ .|.+||+..+.. +..+.. .....+++|+|++..++++.. .++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~------~~~~~~-~~~~~~~~~spdg~~l~~~~~--~~~~~ 152 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF------ISTIPI-PYDAVGIAISPNGNGLILIDR--SSANT 152 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE------EEEEEC-CTTEEEEEECTTSSCEEEEEE--TTTTE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe------EEEEEC-CCCccceEECCCCCEEEEEec--CCCce
Confidence 666665699999999999555553 899999987654 444433 345689999999988888765 5677
Q ss_pred EEEEECCCCCee-----EEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee---eEEEeCCCCcEEEEEEcC
Q 012679 342 IKFWNTHTGACL-----NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK---MAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 342 i~lwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~---~~~~~~h~~~V~~l~~sp 413 (458)
|.+|++.....+ ..+..+.....++|+|++++++++ +..++.|.+||+.+++. +..+..+ ..+..++|+|
T Consensus 153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp 230 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA-NLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR 230 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE-ETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT
T ss_pred EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE-eCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC
Confidence 999998864433 333455678999999999988776 34688999999998887 7777644 5678999999
Q ss_pred CCCEEEEEe-CCCcEEEEecCCCCc
Q 012679 414 DGCTVASAA-ADETLRFWNVFGAPQ 437 (458)
Q Consensus 414 dg~~l~s~s-~Dg~i~iW~~~~~~~ 437 (458)
||++|+.++ .++.|.+||+.+++.
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCce
Confidence 999776555 578899999987655
No 149
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=4.4e-20 Score=178.24 Aligned_cols=275 Identities=11% Similarity=0.043 Sum_probs=187.2
Q ss_pred eEEEEcC--CEEEEEEC--CCCCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC-CceeeEEecCCCcc
Q 012679 154 VLAIALG--STVYLWDA--SDGTTSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST-ANRQLRTLRGGHRS 227 (458)
Q Consensus 154 ~la~~~d--~~v~iwd~--~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~-~~~~~~~~~~~~~~ 227 (458)
+++++.. +.|++|++ .++++..+.... .+...+..++|+|+|++|++++.+ .|.+||+. +++...........
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g 83 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence 4455543 56887764 567665444432 234468899999999999999888 99999997 77665433210012
Q ss_pred cEEEEEeC--CCe--EEEEe-------------CCCcEEEEEccCCCeeEEEEc----ccccceEeEEEcCCCCEEEEEE
Q 012679 228 RVGSLAWN--NHI--LTTGG-------------MDGLIINNDVRVRDHIVETYR----GHNQEVCGLKWSASGQQLASGG 286 (458)
Q Consensus 228 ~v~~l~~~--~~~--l~sg~-------------~dg~i~vwd~~~~~~~~~~~~----~h~~~v~~l~~spd~~~l~sg~ 286 (458)
.+.+++|+ ++. +++++ .+|.+.+|++.....+...+. .+...+.+++|+|||++|+++.
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 23446664 553 44543 689999999975333333222 2456789999999999988776
Q ss_pred C-CCcEEEEeCC-CCCCCCcceeeeeec--ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC--CCCee---EEEe
Q 012679 287 N-DNLLHIWDRS-MASSNSVTQWLHRLE--EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH--TGACL---NSVD 357 (458)
Q Consensus 287 ~-dg~i~iwd~~-~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~~~~~---~~~~ 357 (458)
. ++.|.+||+. +++. ..+..+. .|...+..++|+|++..++++.. .++.|.+|++. +++.. ..+.
T Consensus 164 ~~~~~v~~~~~~~~g~~----~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 164 LTANKLWTHRKLASGEV----ELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp TTTTEEEEEEECTTSCE----EEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCCCEEEEEEECCCCCE----EEeeeEecCCCCCCCCEeEECCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEccceEE
Confidence 4 6899999997 4432 1122232 24567899999999888877764 67899999765 56643 2232
Q ss_pred C---C----C-------CeEEEE-EcCCCCeEEEEecCCC----CcEEEEeCC-CceeeE---EEeCCCCcEEEEEEcC-
Q 012679 358 T---G----S-------QVCALL-WNKNERELLSSHGFTQ----NQLTLWKYP-SMVKMA---ELSGHTSRVLFMAQSP- 413 (458)
Q Consensus 358 ~---~----~-------~v~~~~-~s~~~~~l~~~~g~~d----~~i~iwd~~-~~~~~~---~~~~h~~~V~~l~~sp- 413 (458)
. + . .+..++ |+|+|++|+++....+ +.|.+|++. +++... ....+...+..++|+|
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 1 1 1 478899 9999999887643233 289999986 555432 2334555667899999
Q ss_pred --CCCEEEEEeCC-CcEEEEecCCC
Q 012679 414 --DGCTVASAAAD-ETLRFWNVFGA 435 (458)
Q Consensus 414 --dg~~l~s~s~D-g~i~iW~~~~~ 435 (458)
||++|++++.+ +.|.+|++...
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999998875 89999999765
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=2e-20 Score=204.89 Aligned_cols=277 Identities=10% Similarity=0.066 Sum_probs=198.6
Q ss_pred cccceeeccC-CC-eEEEEcC------CEEEEEECCCCCeeeEEEecCCCCCE-------EEEEEcCCCCEEEEEecC--
Q 012679 142 YYLNLLDWGS-SN-VLAIALG------STVYLWDASDGTTSELVTVDDENGPV-------TSVNWAPDGRHIAIGLNN-- 204 (458)
Q Consensus 142 ~~~~~~~~~~-~~-~la~~~d------~~v~iwd~~~~~~~~~~~~~~h~~~V-------~~v~~s~~g~~la~g~~d-- 204 (458)
..+..+.|++ +. ++.++.+ ..|++|++.+++ ...+..|...+ .+++|+|||+++++++.+
T Consensus 53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~ 129 (1045)
T 1k32_A 53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE---IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP 129 (1045)
T ss_dssp SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE---EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC---eEEcccCCCcccccccccccccCCCCCEEEEEECCcCC
Confidence 3577889987 33 5545433 389999998876 45667788778 999999999977777644
Q ss_pred ----CeEEEEeCCCceeeE-------------------------------------------------EecCCCcccEEE
Q 012679 205 ----CQVQLWDSTANRQLR-------------------------------------------------TLRGGHRSRVGS 231 (458)
Q Consensus 205 ----g~v~iwd~~~~~~~~-------------------------------------------------~~~~~~~~~v~~ 231 (458)
..|.+||+.+++... .+. +|...+.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~-~~~~~v~~ 208 (1045)
T 1k32_A 130 FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSS 208 (1045)
T ss_dssp STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEE
T ss_pred CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc-CCCCcccc
Confidence 358888876654321 111 25667777
Q ss_pred EEeCCC-eEEEEeCCCcEEEEEccCCCeeEEEEcc---------------------------------------------
Q 012679 232 LAWNNH-ILTTGGMDGLIINNDVRVRDHIVETYRG--------------------------------------------- 265 (458)
Q Consensus 232 l~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~--------------------------------------------- 265 (458)
+.|+++ ++++++.+|.+.+|.+.........+..
T Consensus 209 ~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~ 288 (1045)
T 1k32_A 209 PVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESP 288 (1045)
T ss_dssp EEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBC
T ss_pred eEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccc
Confidence 888654 4556677788888876532111111111
Q ss_pred -----cccceEeEEEc-CCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc-ceeEEEecCCCCcEEEEeCCCC
Q 012679 266 -----HNQEVCGLKWS-ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS-AVKAIAWCPFQSNLLATGGGGG 338 (458)
Q Consensus 266 -----h~~~v~~l~~s-pd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~ll~s~~g~~ 338 (458)
|...+.+++|+ |||++|++++ ++.|.+|+...+. ...+..|.. .+..++|+ ++..+++.+ .
T Consensus 289 ~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~s-dg~~l~~~s---~ 356 (1045)
T 1k32_A 289 EDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------VLKVPEPLRIRYVRRGGD-TKVAFIHGT---R 356 (1045)
T ss_dssp CSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------EEECSCCSCEEEEEECSS-SEEEEEEEE---T
T ss_pred ccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------eEEccCCCcceEEeeeEc-CCCeEEEEE---C
Confidence 12246667777 7777777666 5677777765443 233556666 88999999 776666654 4
Q ss_pred CCeEE-EEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCE
Q 012679 339 DRCIK-FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417 (458)
Q Consensus 339 d~~i~-lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~ 417 (458)
+..+. +||+.+++......+...+..++|+|+++.|+++. .++.|++||+.+++....+.+|...+.+++|||||++
T Consensus 357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~--~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN--DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC--CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCe
Confidence 77888 99998887655444456799999999999999854 7889999999999888888789999999999999999
Q ss_pred EEEEeCCC----------cEEEEecCCCC
Q 012679 418 VASAAADE----------TLRFWNVFGAP 436 (458)
Q Consensus 418 l~s~s~Dg----------~i~iW~~~~~~ 436 (458)
|++++.++ .|++||+.++.
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99887754 89999998765
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=205.40 Aligned_cols=281 Identities=10% Similarity=0.123 Sum_probs=194.2
Q ss_pred eeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC---CEEEEEEcCCCCEEEEEec---------CCeEEEEeC
Q 012679 146 LLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENG---PVTSVNWAPDGRHIAIGLN---------NCQVQLWDS 212 (458)
Q Consensus 146 ~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~---~V~~v~~s~~g~~la~g~~---------dg~v~iwd~ 212 (458)
.+.|++ +.+++.+.++.|++||+.+++...+. ..|.. .|.+++|||||++||+++. ++.|++||+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTIL--SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEE--CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEE--ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 356766 35666778999999999999874443 32222 4889999999999999876 789999999
Q ss_pred CCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccce-----------------EeE
Q 012679 213 TANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV-----------------CGL 273 (458)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v-----------------~~l 273 (458)
.+++.+.... ....+..++| +|+.|+.+. ++.|++||+.++........++...| .++
T Consensus 98 ~~g~~~~~~~--l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 98 SNGEFVRGNE--LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTTEECCSSC--CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCCcccccee--cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 9988732111 1245777888 578888875 78999999987664222222333222 489
Q ss_pred EEcCCCCEEEEEECCC----------------------------------cEEEEeCCCCCCC--Ccceeeeeecccccc
Q 012679 274 KWSASGQQLASGGNDN----------------------------------LLHIWDRSMASSN--SVTQWLHRLEEHTSA 317 (458)
Q Consensus 274 ~~spd~~~l~sg~~dg----------------------------------~i~iwd~~~~~~~--~~~~~~~~~~~h~~~ 317 (458)
+|+|||++|++++.|. .|++||+.++... ........+..|...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 9999999999988652 7889998875431 000000224468888
Q ss_pred eeEEEecCCCCcEEEEeC--CCCCCeEEEEE----CCCCCeeEEE-----eCCCCeE-----EEEEcCCCCeEEEEecCC
Q 012679 318 VKAIAWCPFQSNLLATGG--GGGDRCIKFWN----THTGACLNSV-----DTGSQVC-----ALLWNKNERELLSSHGFT 381 (458)
Q Consensus 318 v~~l~~~p~~~~ll~s~~--g~~d~~i~lwd----~~~~~~~~~~-----~~~~~v~-----~~~~s~~~~~l~~~~g~~ 381 (458)
+..++|+|++ .++++.. +.....|.+|| ..++++...+ .+...+. .+.|+|+|+.++......
T Consensus 255 ~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 255 FSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred EEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 9999999984 5666532 11224588999 8887765544 2233454 789999999776643334
Q ss_pred CC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEecCC
Q 012679 382 QN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-----ETLRFWNVFG 434 (458)
Q Consensus 382 d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iW~~~~ 434 (458)
++ .|.+|++.+++ ...+..+...|..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 334 ~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 334 DGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 44 57778877665 45666666678888888 88887777665 8899998864
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=4.7e-20 Score=201.90 Aligned_cols=272 Identities=11% Similarity=0.030 Sum_probs=208.3
Q ss_pred ccceeecc-C-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC-CEEEEEEcCCCCEEEEEecCCeEE-EEeCCCceee
Q 012679 143 YLNLLDWG-S-SNVLAIALGSTVYLWDASDGTTSELVTVDDENG-PVTSVNWAPDGRHIAIGLNNCQVQ-LWDSTANRQL 218 (458)
Q Consensus 143 ~~~~~~~~-~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~-~V~~v~~s~~g~~la~g~~dg~v~-iwd~~~~~~~ 218 (458)
.+..+.|+ + +..++.+.++.|++|++.+++. ..+..|.. .+.+++|+ ||+.|++++.++.+. +||+.+++..
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~ 372 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYV---LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE 372 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSBE---EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCCCce---EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce
Confidence 57889999 7 3445555599999999988774 34566777 89999999 999999999888898 9999877654
Q ss_pred EEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC-------
Q 012679 219 RTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN------- 289 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg------- 289 (458)
.+. +|...+..++| +++.|++++.++.|++||+.++.. .....+|...+.+++|+|||++|++++.++
T Consensus 373 -~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 373 -KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp -ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred -Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence 444 38889999999 578999999999999999987764 455568899999999999999999887654
Q ss_pred ---cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--------------
Q 012679 290 ---LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-------------- 352 (458)
Q Consensus 290 ---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-------------- 352 (458)
.|++||+.++. ...+..|...+..++|+|++..+++.+ .++...+|+......
T Consensus 450 ~~~~i~l~d~~~g~-------~~~l~~~~~~~~~~~~spdG~~l~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1045)
T 1k32_A 450 VMQAIHVYDMEGRK-------IFAATTENSHDYAPAFDADSKNLYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLI 519 (1045)
T ss_dssp CEEEEEEEETTTTE-------EEECSCSSSBEEEEEECTTSCEEEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESS
T ss_pred CCCeEEEEECCCCc-------EEEeeCCCcccCCceEcCCCCEEEEEe---cccCCcCcchhccccccccCceeEEEEeC
Confidence 89999998753 456677888899999999988777655 444455554332211
Q ss_pred -----------------------------eEEEe-CCCCeEEEEEcCCCCeEEEE-----------ecCCCCcEEEEeCC
Q 012679 353 -----------------------------LNSVD-TGSQVCALLWNKNERELLSS-----------HGFTQNQLTLWKYP 391 (458)
Q Consensus 353 -----------------------------~~~~~-~~~~v~~~~~s~~~~~l~~~-----------~g~~d~~i~iwd~~ 391 (458)
+..+. +...+..+.++|++..+++. .......|.+||+.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~ 599 (1045)
T 1k32_A 520 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK 599 (1045)
T ss_dssp TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT
T ss_pred CCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECC
Confidence 11111 23567899999999877751 12235578889998
Q ss_pred CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 392 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
+++... +. ..+..++|||||++|++++.| .|++||+..++
T Consensus 600 ~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 600 TRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp TCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred CCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 876532 32 568899999999999998877 89999997765
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=6.1e-20 Score=178.26 Aligned_cols=282 Identities=11% Similarity=0.060 Sum_probs=194.2
Q ss_pred cccceeeccC--CCeEEEEc-CC--EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679 142 YYLNLLDWGS--SNVLAIAL-GS--TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~-d~--~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
.|+....|++ ..++.++. ++ .|++||+.+++...+ ..++...+..+.|+|||++|+.+..++.|++||+.+++
T Consensus 36 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 36 NYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL--TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC--CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred hhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe--eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4555577887 34666665 55 599999999876433 34455555577899999999999999999999999988
Q ss_pred eeEEecCCCcccEEEEEe----CCCeEEEE----------------------eCCCcEEEEEccCCCeeEEEEcccccce
Q 012679 217 QLRTLRGGHRSRVGSLAW----NNHILTTG----------------------GMDGLIINNDVRVRDHIVETYRGHNQEV 270 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~l~~----~~~~l~sg----------------------~~dg~i~vwd~~~~~~~~~~~~~h~~~v 270 (458)
....+.. +...+....| ++..++.. ..++.|.+||+.++.. ..+..+...+
T Consensus 114 ~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~ 190 (388)
T 3pe7_A 114 ENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES--TVILQENQWL 190 (388)
T ss_dssp EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE--EEEEEESSCE
T ss_pred ceeeeec-hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce--EEeecCCccc
Confidence 7666654 5555544444 45666532 2446899999987753 4455567778
Q ss_pred EeEEEcC-CCCEEEEEECC------CcEEEEeCCCCCCCCcceeeeeecccc--cceeEEEecCCCCcEEEEeCC--CCC
Q 012679 271 CGLKWSA-SGQQLASGGND------NLLHIWDRSMASSNSVTQWLHRLEEHT--SAVKAIAWCPFQSNLLATGGG--GGD 339 (458)
Q Consensus 271 ~~l~~sp-d~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~p~~~~ll~s~~g--~~d 339 (458)
..+.|+| ||+.|+.+..+ ..|.++|...... ..+..+. ..+..++|+|++..++++... ..+
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (388)
T 3pe7_A 191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPD 263 (388)
T ss_dssp EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence 9999999 99999888764 3788888765443 3333333 357789999999888665431 112
Q ss_pred CeEEEEECCCCCeeEEEeCCC------CeEEEEEcCCCCeEEEEec-------CCCCcEEEEeCCCceeeEEEeCCCC--
Q 012679 340 RCIKFWNTHTGACLNSVDTGS------QVCALLWNKNERELLSSHG-------FTQNQLTLWKYPSMVKMAELSGHTS-- 404 (458)
Q Consensus 340 ~~i~lwd~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~g-------~~d~~i~iwd~~~~~~~~~~~~h~~-- 404 (458)
..|++||+.+++......... ......|+|+|+.|+.+.. ..+..|++||+.+++. ..+..|..
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~ 342 (388)
T 3pe7_A 264 RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSW 342 (388)
T ss_dssp EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCC
T ss_pred ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcc
Confidence 349999999998543322221 0122379999998886431 3467899999998765 44555555
Q ss_pred ---------cEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCC
Q 012679 405 ---------RVLFMAQSPDGCTVASAA-ADETLRFWNVFGAP 436 (458)
Q Consensus 405 ---------~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~~~ 436 (458)
.+.+++|+|||+.|+.++ .+|...||.+.-..
T Consensus 343 ~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 343 KVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred cccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 578899999999888666 47888888775443
No 154
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.8e-20 Score=197.30 Aligned_cols=269 Identities=10% Similarity=0.088 Sum_probs=189.5
Q ss_pred ccceeeccC-CC-eEEEEcC---------CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEe
Q 012679 143 YLNLLDWGS-SN-VLAIALG---------STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211 (458)
Q Consensus 143 ~~~~~~~~~-~~-~la~~~d---------~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd 211 (458)
.+..++|++ ++ +++++.+ +.|++||+.+++...+....+|...+.+++|||||++||+++. +.|++||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 477889988 34 5555443 7899999999886444444455566899999999999999876 7999999
Q ss_pred CCCceeeEEecCCCccc------------------EEEEEe--CCCeEEEEeCCC-------------------------
Q 012679 212 STANRQLRTLRGGHRSR------------------VGSLAW--NNHILTTGGMDG------------------------- 246 (458)
Q Consensus 212 ~~~~~~~~~~~~~~~~~------------------v~~l~~--~~~~l~sg~~dg------------------------- 246 (458)
+.+++....... +... +.+++| +++.|++++.++
T Consensus 141 ~~~g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 141 HVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred CCCCceEEEecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 999887665554 3332 378899 578888887543
Q ss_pred ---------cEEEEEccCCCeeEEEEccc------ccceEeEEEcCCCCEEEEEEC----CCcEEEEeCCCCCCCCccee
Q 012679 247 ---------LIINNDVRVRDHIVETYRGH------NQEVCGLKWSASGQQLASGGN----DNLLHIWDRSMASSNSVTQW 307 (458)
Q Consensus 247 ---------~i~vwd~~~~~~~~~~~~~h------~~~v~~l~~spd~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~ 307 (458)
.|++||+.++.. ...+..+ ...+..++|+|||++|++... +..|++||+.++..
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~------ 292 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC------ 292 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE------
T ss_pred CCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc------
Confidence 799999987653 2344433 678999999999999877653 35799999987754
Q ss_pred eeeecc-cccce----eEEEecCCCCcEEEE-eCCCCCC------eEEEEE-CCCCC--eeEEEe-CCCCeEE-EEEcCC
Q 012679 308 LHRLEE-HTSAV----KAIAWCPFQSNLLAT-GGGGGDR------CIKFWN-THTGA--CLNSVD-TGSQVCA-LLWNKN 370 (458)
Q Consensus 308 ~~~~~~-h~~~v----~~l~~~p~~~~ll~s-~~g~~d~------~i~lwd-~~~~~--~~~~~~-~~~~v~~-~~~s~~ 370 (458)
...+.. +...+ ..++|+|++..+++. +. .++ .|.+|| ..++. +...+. ....+.. +.|+|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd 370 (723)
T 1xfd_A 293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI--PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK 370 (723)
T ss_dssp EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE--CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT
T ss_pred eEEEEeccCCEEeccCCCceEcCCCCeEEEEEec--ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC
Confidence 222222 33333 378999999988775 43 566 577788 44444 144443 2344554 689999
Q ss_pred CCeEEEEecCCC--CcEEEEeCCCc--eeeEEEeC---CCCcEEEEEEcCCCCEEEEEeC
Q 012679 371 ERELLSSHGFTQ--NQLTLWKYPSM--VKMAELSG---HTSRVLFMAQSPDGCTVASAAA 423 (458)
Q Consensus 371 ~~~l~~~~g~~d--~~i~iwd~~~~--~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~ 423 (458)
++.|+.+.. .+ +.+.||++... .....+.. |...+..++|+|||++|+....
T Consensus 371 g~~l~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 371 GNKIYFLST-EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp TTEEEEEES-SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred CCEEEEEEc-CCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 999987542 34 78999988643 23334443 6677899999999998886543
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=4.3e-20 Score=189.62 Aligned_cols=264 Identities=12% Similarity=0.034 Sum_probs=184.8
Q ss_pred cceeeccC--CCeEEEEc-CCEEEEEECCCCCeeeEEEecCCC-CCEEEEEEcCCCCEEEEEec---CCeEEEEeCCC--
Q 012679 144 LNLLDWGS--SNVLAIAL-GSTVYLWDASDGTTSELVTVDDEN-GPVTSVNWAPDGRHIAIGLN---NCQVQLWDSTA-- 214 (458)
Q Consensus 144 ~~~~~~~~--~~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~-~~V~~v~~s~~g~~la~g~~---dg~v~iwd~~~-- 214 (458)
+..+.+++ ..++.++. +|++.||++.+++. ..+..|. ..+.+++|+|| ++++++.. +....||.+..
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcCCCc---EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 55566654 45666666 99999999977664 3344444 58999999999 77777765 44556654433
Q ss_pred ceeeEEecCCCcccEEEEEeCCC-eEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC----C
Q 012679 215 NRQLRTLRGGHRSRVGSLAWNNH-ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND----N 289 (458)
Q Consensus 215 ~~~~~~~~~~~~~~v~~l~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d----g 289 (458)
......+...+...+.+++++++ .+++.+.++.+.+||+.++.. ..+..+.. .+++|+|||++|++++.+ +
T Consensus 100 ~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~--~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 100 PGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL--RELARLPG--FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE--EEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred CCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE--EEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence 22222444323444666777764 344444555566999987653 23333333 789999999999988877 7
Q ss_pred cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCCeeEEEeC-CCCeEEEE
Q 012679 290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGACLNSVDT-GSQVCALL 366 (458)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~~~~~~-~~~v~~~~ 366 (458)
.|++||+.++.. ..+..|...+..++|+|++..++ ++. .++ .|++||+.+++.. .+.. ...+..+.
T Consensus 176 ~i~~~d~~~g~~-------~~l~~~~~~~~~~~~SpDG~~l~-~~~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 176 SLFTSNLSSGGL-------RVFDSGEGSFSSASISPGMKVTA-GLE--TAREARLVTVDPRDGSVE-DLELPSKDFSSYR 244 (582)
T ss_dssp EEEEEETTTCCC-------EEECCSSCEEEEEEECTTSCEEE-EEE--CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred EEEEEcCCCCCc-------eEeecCCCccccceECCCCCEEE-Ecc--CCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence 899999887764 46678888999999999988777 443 677 8999999999887 4432 33455555
Q ss_pred --------EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCc---EEEEecCC
Q 012679 367 --------WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADET---LRFWNVFG 434 (458)
Q Consensus 367 --------~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~---i~iW~~~~ 434 (458)
|+|+|..+++ +..++.+++|++ ++... .+.+.|.+++|+ +|+++++++.+.+ |.+|+..+
T Consensus 245 ~~~~~~~~~spdg~~~~~--~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVV--ARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp CSEEEEEEECTTSCEEEE--EEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred hccccceeEcCCCcEEEE--EEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999955555 347899999999 55443 345678999999 9999999888754 66666543
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=9.1e-19 Score=167.46 Aligned_cols=248 Identities=12% Similarity=0.083 Sum_probs=172.4
Q ss_pred cceeeccCC-CeEEEEc---CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCC-c--
Q 012679 144 LNLLDWGSS-NVLAIAL---GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTA-N-- 215 (458)
Q Consensus 144 ~~~~~~~~~-~~la~~~---d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~-~-- 215 (458)
...+.|+++ ++++++. ++.|++|++.+++...+..+..+...+..++|+|+|++|++++ .++.|.+|++.. +
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 345777763 3666665 4899999998887666666556677889999999999998888 678999999963 2
Q ss_pred eeeEEecCC--------CcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeE--EEEcc-cccceEeEEEcCCCCEE
Q 012679 216 RQLRTLRGG--------HRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIV--ETYRG-HNQEVCGLKWSASGQQL 282 (458)
Q Consensus 216 ~~~~~~~~~--------~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~~-h~~~v~~l~~spd~~~l 282 (458)
+.+..+... +...+.+++| +++++++...++.|.+||+.....+. ..+.. ....+..++|+|||++|
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 333333221 1234788899 46766677778899999998333222 22222 23367789999999976
Q ss_pred EE-EECCCcEEEEeCCCCCCCCcceeeeeecccc------cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-C--Ce
Q 012679 283 AS-GGNDNLLHIWDRSMASSNSVTQWLHRLEEHT------SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-G--AC 352 (458)
Q Consensus 283 ~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~--~~ 352 (458)
++ +..++.|.+|++...... ...+..+.... ..+..++|+|++..++++.. .++.|.+|++.. + +.
T Consensus 202 ~v~~~~~~~v~v~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~~~~ 277 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQTGA--FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGHLTL 277 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTE--EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGCEEE
T ss_pred EEEeCCCCEEEEEEecCCCCc--eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCcEEE
Confidence 65 456889999998752221 11122222222 45788999999988877765 689999999973 2 44
Q ss_pred eEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEE--eCCCceee
Q 012679 353 LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLW--KYPSMVKM 396 (458)
Q Consensus 353 ~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw--d~~~~~~~ 396 (458)
+..+.. ...+..++|+|++++|+++. ..++.|.+| |..+++..
T Consensus 278 ~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 278 IQQISTEGDFPRDFDLDPTEAFVVVVN-QNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEECSSSCCCEEEECTTSSEEEEEE-TTTTEEEEEEECTTTCCEE
T ss_pred eEEEecCCCCcCeEEECCCCCEEEEEE-cCCCcEEEEEEeCCCCeEE
Confidence 555554 45688999999999988864 356899999 54555543
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=6.5e-20 Score=181.05 Aligned_cols=252 Identities=13% Similarity=0.137 Sum_probs=174.8
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce----------eeEEe----cCCCc
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR----------QLRTL----RGGHR 226 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~----------~~~~~----~~~~~ 226 (458)
+.+++|+... . + ....+..+++++++.++++|+.+| ++||+..... .+... ...+.
T Consensus 23 ~~vri~~~~~-~------~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (434)
T 2oit_A 23 KKVRIFDSPE-E------L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK 92 (434)
T ss_dssp CEEECSCCCS-S------C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred eeEEecCCcc-c------c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC
Confidence 6788886431 1 1 234578999999999999999887 8898743210 11110 11256
Q ss_pred ccEEEEEeC--CCeEE----EEeCCCcEEEEEccCC-----Ce-----eEEEEcccccceEeEEEcCC-CCEEEEEECCC
Q 012679 227 SRVGSLAWN--NHILT----TGGMDGLIINNDVRVR-----DH-----IVETYRGHNQEVCGLKWSAS-GQQLASGGNDN 289 (458)
Q Consensus 227 ~~v~~l~~~--~~~l~----sg~~dg~i~vwd~~~~-----~~-----~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg 289 (458)
..|.+++|+ +.+|+ +|+.|+.|++||+++. .. ....+.+|...|.+++|+|+ +.+|++++.||
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 789999995 68888 7889999999998754 11 24556689999999999998 89999999999
Q ss_pred cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--------CC
Q 012679 290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--------SQ 361 (458)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--------~~ 361 (458)
+|++||++.... .....+|...|.+++|+|++..+ ++|+ .||.|++||.+ ++....+... ..
T Consensus 173 ~v~iwD~~~~~~------~~~~~~~~~~v~~v~wspdg~~l-asgs--~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~ 242 (434)
T 2oit_A 173 SIAVLQVTETVK------VCATLPSTVAVTSVCWSPKGKQL-AVGK--QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVR 242 (434)
T ss_dssp CEEEEEESSSEE------EEEEECGGGCEEEEEECTTSSCE-EEEE--TTSCEEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred eEEEEEcCCCcc------eeeccCCCCceeEEEEcCCCCEE-EEEc--CCCcEEEEccC-CcccccccCCcccCCCCcee
Confidence 999999987643 44556788999999999986555 4554 89999999998 6666555321 26
Q ss_pred eEEEEEcCCCCeEEEEecCCCC------cEEEEeCCCce-----eeEEEe-------CCCCcEEEEEEcCCCCEEEEEeC
Q 012679 362 VCALLWNKNERELLSSHGFTQN------QLTLWKYPSMV-----KMAELS-------GHTSRVLFMAQSPDGCTVASAAA 423 (458)
Q Consensus 362 v~~~~~s~~~~~l~~~~g~~d~------~i~iwd~~~~~-----~~~~~~-------~h~~~V~~l~~spdg~~l~s~s~ 423 (458)
+.++.|++++.++++... .+| .+++|++.... ....+. +...+-..+.+-++.+++++++.
T Consensus 243 v~~v~w~~~~~~l~~~~~-~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~ 321 (434)
T 2oit_A 243 VLDVLWIGTYVFAIVYAA-ADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA 321 (434)
T ss_dssp EEEEEEEETTEEEEEEEE-TTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred EEEEEEecCceEEEEEcc-CCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence 899999998888766543 232 38999997642 112221 11222233444467676665554
Q ss_pred -CCcEEEEecC
Q 012679 424 -DETLRFWNVF 433 (458)
Q Consensus 424 -Dg~i~iW~~~ 433 (458)
.+.|.+....
T Consensus 322 ~s~dv~vl~~~ 332 (434)
T 2oit_A 322 ASTEVSILARQ 332 (434)
T ss_dssp TCSBCEEEEEC
T ss_pred CCCceeEEEec
Confidence 4445555543
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=4.6e-19 Score=168.03 Aligned_cols=242 Identities=11% Similarity=0.065 Sum_probs=179.5
Q ss_pred cceeeccCC--CeEEEE-cCCEEEEEECCCCCeeeEEEecC---CCCCEEEEEEcCCCCEEEEEe------------cCC
Q 012679 144 LNLLDWGSS--NVLAIA-LGSTVYLWDASDGTTSELVTVDD---ENGPVTSVNWAPDGRHIAIGL------------NNC 205 (458)
Q Consensus 144 ~~~~~~~~~--~~la~~-~d~~v~iwd~~~~~~~~~~~~~~---h~~~V~~v~~s~~g~~la~g~------------~dg 205 (458)
...+.|+++ .+++++ .++.|++||+.+++......... |...+.+++|+|+|++|+++. .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 445777774 344444 46899999999988744333322 112577899999999999886 579
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA 283 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~ 283 (458)
.|.+||+.+++.+..+.. ...+.+++| +++.|+++ ++.|.+||+.++.. ...+..+.. ...+.|+|+++.++
T Consensus 116 ~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~-~~~~~~~~~-~~~~~~s~dg~~l~ 189 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL-VEDKPIQSW-EAETYAQPDVLAVW 189 (337)
T ss_dssp EEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE-EEEECSTTT-TTTTBCCCBCCCCC
T ss_pred eEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE-eeeeecccc-CCCceeCCCccEEe
Confidence 999999999988887763 345667778 46777777 68999999987654 444443321 11347899998776
Q ss_pred EEECCC------------------------cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679 284 SGGNDN------------------------LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 284 sg~~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
..+.++ .|.+||+.+++.. ...+..+...+.+++|+|++..++++ +
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~-----~ 259 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MREVRIMDVFYFSTAVNPAKTRAFGA-----Y 259 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEEEEECSSCEEEEEECTTSSEEEEE-----E
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----EeecCCCCCceeeEEECCCCCEEEEe-----C
Confidence 554332 4689998876541 23344566678899999988776664 5
Q ss_pred CeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC
Q 012679 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT 403 (458)
Q Consensus 340 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~ 403 (458)
+.|.+||+.+++.+..+..+..+.+++|+|+++.++++ ..++.|.+||+.+++.+..+..+.
T Consensus 260 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 260 NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG--GALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE--SBSSEEEEEETTTCCEEEEEECGG
T ss_pred CeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE--cCCCcEEEEECcCCcEEEEEEcCC
Confidence 89999999999999988888889999999999999885 358999999999999888886553
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=1.2e-18 Score=166.08 Aligned_cols=232 Identities=11% Similarity=0.028 Sum_probs=171.8
Q ss_pred CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCCC-----c
Q 012679 153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGGH-----R 226 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~-----~ 226 (458)
.+++++.++.|++||..+++........ ....+..++|+|+|++++++ ..++.|.+||+.+++.+..+...+ .
T Consensus 13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~ 91 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 91 (349)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECS-SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEecC-CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccc
Confidence 3666778999999999998874433332 11257899999999876554 568899999999999887776423 2
Q ss_pred ccEEEEEe--CCCeEEEEeCC------------CcEEEEEccCCCe--eEEEEcccccceEeEEEcCCCCEEEEEECCCc
Q 012679 227 SRVGSLAW--NNHILTTGGMD------------GLIINNDVRVRDH--IVETYRGHNQEVCGLKWSASGQQLASGGNDNL 290 (458)
Q Consensus 227 ~~v~~l~~--~~~~l~sg~~d------------g~i~vwd~~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~ 290 (458)
..+.+++| ++++|++++.+ +.|.+||+.++.. .+.... +...+.+++|+|+|+ +++++. .
T Consensus 92 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~ 167 (349)
T 1jmx_B 92 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--D 167 (349)
T ss_dssp ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--S
T ss_pred ccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--c
Confidence 33667788 57788888865 8999999987432 122333 334688999999999 555544 4
Q ss_pred EEEEeCCCCCCCCcceeeeeecc---------------------------------------------------------
Q 012679 291 LHIWDRSMASSNSVTQWLHRLEE--------------------------------------------------------- 313 (458)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 313 (458)
|.+||..+++.. ..+..
T Consensus 168 i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 168 IYKMDVKTGKYT------VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp EEEECTTTCCEE------EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred EEEEeCCCCcee------ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 999998876531 11110
Q ss_pred -----------cccceeEEEecC-CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679 314 -----------HTSAVKAIAWCP-FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381 (458)
Q Consensus 314 -----------h~~~v~~l~~~p-~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 381 (458)
+...+..++|+| ++..++++ ++.|.+||+.+++.+..+..+..+..++|+|+++.|+++ ..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~ 314 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG--GT 314 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE--SB
T ss_pred CCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEe--cC
Confidence 112455778889 87766654 679999999999999888888888999999999999884 36
Q ss_pred CCcEEEEeCCCceeeEEEeCC
Q 012679 382 QNQLTLWKYPSMVKMAELSGH 402 (458)
Q Consensus 382 d~~i~iwd~~~~~~~~~~~~h 402 (458)
++.|.+||..+++.+..+...
T Consensus 315 ~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 315 FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSEEEEEETTTTEEEEEEECS
T ss_pred CCeEEEEeccccceeeeeecC
Confidence 799999999999988887654
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=7.2e-20 Score=187.93 Aligned_cols=235 Identities=10% Similarity=-0.029 Sum_probs=169.6
Q ss_pred CCCEEEEEEcCCCCEEEEEec-CCeEEEEeCCCceeeEEecCCCcccEEEEEeCC-CeEEEEeC---CCcEEEEEccC--
Q 012679 183 NGPVTSVNWAPDGRHIAIGLN-NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN-HILTTGGM---DGLIINNDVRV-- 255 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~---dg~i~vwd~~~-- 255 (458)
..+|++++|+|||++||+++. ||+++||++.+++. ..+...+...+..++|++ .++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999887 99999999866655 445442446899999965 45555554 45566665544
Q ss_pred CCeeEEEEcccccceEeEEEcCCCCE-EEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679 256 RDHIVETYRGHNQEVCGLKWSASGQQ-LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 256 ~~~~~~~~~~h~~~v~~l~~spd~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
..... .+..+ ..+...+|+||++. +++.+.++.+.+||+.++.. ..+..+.. .+++|+|+|..+++++
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-------~~l~~~~~--~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-------RELARLPG--FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-------EEEEEESS--CEEEEEEETTEEEEEE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-------EEeecCCC--ceEEECCCCCEEEEEE
Confidence 32222 33222 22345688888753 33334445556999877643 22323333 7899999988777554
Q ss_pred CC-CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC--cEEEEeCCCceeeEEEeCCCCcEEEEE-
Q 012679 335 GG-GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSRVLFMA- 410 (458)
Q Consensus 335 ~g-~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~- 410 (458)
.. ...+.|++||+.+++......+...+..++|+|||+.|+++ ..++ .|++||+.+++.. .+.+|...+..++
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~--~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGL--ETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEE--ECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEc--cCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence 21 01167999999998876554556678999999999999953 3566 8999999998887 7788887777777
Q ss_pred -------EcCCCCEEEEEeCCCcEEEEec
Q 012679 411 -------QSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 411 -------~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
|+|||.++++++.||++++|++
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999999999999999999999
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=7.3e-18 Score=160.22 Aligned_cols=242 Identities=14% Similarity=0.126 Sum_probs=187.9
Q ss_pred CCCEEEEEEcCCCCEEEEEecC------------------------CeEEEEeCCCceeeEEecCCCcccEEEEEeC--C
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNN------------------------CQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N 236 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~ 236 (458)
-+.+.+|+++|+|+++++...+ +.|.+||..+++.+..+..++-.....++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999988887777 4799999999998877765466788899994 6
Q ss_pred CeEEEEeCCCcEEEEEccCCCeeEEEE---------cccccceEeEEEcC-CCCEEEEEE-CCCcEEEEeCCCCCCCCcc
Q 012679 237 HILTTGGMDGLIINNDVRVRDHIVETY---------RGHNQEVCGLKWSA-SGQQLASGG-NDNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~---------~~h~~~v~~l~~sp-d~~~l~sg~-~dg~i~iwd~~~~~~~~~~ 305 (458)
+++++...++.|++||.......+..+ .++.....+++++| ++.++++.+ .++.|++||.. +..
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~---- 177 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKF---- 177 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCE----
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCE----
Confidence 788888889999999986543233444 24455789999999 788888886 68999999943 332
Q ss_pred eeeeeec----------ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCC
Q 012679 306 QWLHRLE----------EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNER 372 (458)
Q Consensus 306 ~~~~~~~----------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~ 372 (458)
+..+. .+-.....++++|++..++++.. .++.|++||..+|+.+..+.. ...+..++++| .
T Consensus 178 --~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g 251 (329)
T 3fvz_A 178 --VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--G 251 (329)
T ss_dssp --EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--T
T ss_pred --EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--C
Confidence 33332 12234789999998788888876 789999999999999988853 45688999999 2
Q ss_pred eEEEEec------CCCCcEEEEeCCCceeeEEEe---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 373 ELLSSHG------FTQNQLTLWKYPSMVKMAELS---GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 373 ~l~~~~g------~~d~~i~iwd~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.++...| ..++.|.+|++.+++.+..+. ++...+..|+++|+|.++++...++.|++|++...
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 3333222 345689999999999988873 66778999999999988888889999999998754
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.9e-17 Score=159.30 Aligned_cols=263 Identities=10% Similarity=0.039 Sum_probs=177.5
Q ss_pred cceeeccC-CC-eEEEEcC----CEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCC
Q 012679 144 LNLLDWGS-SN-VLAIALG----STVYLWDASD--GTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTA 214 (458)
Q Consensus 144 ~~~~~~~~-~~-~la~~~d----~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~ 214 (458)
...+.|++ ++ +++++.+ +.|.+|++.. ++...+.....+......+++ ++++|+++. .++.|.+|++..
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 44577777 33 5566654 7999998765 666666666656677888888 888887776 578999999975
Q ss_pred ceeeEEe----c--C-------CCcccEEEEEeC--CCeEEEE-eCCCcEEEEEccCCCe------e------EEEEccc
Q 012679 215 NRQLRTL----R--G-------GHRSRVGSLAWN--NHILTTG-GMDGLIINNDVRVRDH------I------VETYRGH 266 (458)
Q Consensus 215 ~~~~~~~----~--~-------~~~~~v~~l~~~--~~~l~sg-~~dg~i~vwd~~~~~~------~------~~~~~~h 266 (458)
...+..+ . + .+...+.+++|+ +++|+++ ..++.|.+|++..... + ......+
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 4433221 1 0 022345788884 6655554 4588999999875442 1 1222334
Q ss_pred ccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC-CCeEEE
Q 012679 267 NQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG-DRCIKF 344 (458)
Q Consensus 267 ~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~-d~~i~l 344 (458)
...+..++|+|||+++++++ .++.|.+||+..+.... ...+.....+......++|+|++..++++.. . ++.|.+
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~-~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~v 286 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE-IQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKADGVAI 286 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE-EEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSCEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE-eEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCCEEEE
Confidence 55678999999999888777 68999999988543210 0111122233445679999999888877764 4 689999
Q ss_pred EECC--CCC--eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC--CCceeeEEE-eCCCCcEEEEEEc
Q 012679 345 WNTH--TGA--CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY--PSMVKMAEL-SGHTSRVLFMAQS 412 (458)
Q Consensus 345 wd~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~--~~~~~~~~~-~~h~~~V~~l~~s 412 (458)
|++. +++ .+..+..+..+..++|+|++++|+++. ..++.|.+|++ .+++..... ..+...+.|++|.
T Consensus 287 ~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~-~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC-RDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE-TTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE-CCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9985 455 445555566788999999999998864 36789999654 466554332 1244568888885
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.3e-18 Score=183.16 Aligned_cols=282 Identities=12% Similarity=0.108 Sum_probs=190.2
Q ss_pred cceeeccC-CC-eEEEEc---------CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC
Q 012679 144 LNLLDWGS-SN-VLAIAL---------GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212 (458)
Q Consensus 144 ~~~~~~~~-~~-~la~~~---------d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~ 212 (458)
+..+.|++ ++ ++.++. ++.|++||+.+++......+ ...+.+++|||||++||++. ++.|++||+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence 66788988 34 444444 58999999999875110222 24588999999999999985 779999999
Q ss_pred CCceeeEEecCCCcccE-----------------EEEEe--CCCeEEEEeCCC---------------------------
Q 012679 213 TANRQLRTLRGGHRSRV-----------------GSLAW--NNHILTTGGMDG--------------------------- 246 (458)
Q Consensus 213 ~~~~~~~~~~~~~~~~v-----------------~~l~~--~~~~l~sg~~dg--------------------------- 246 (458)
.+++..+....++...| .+++| +|+.|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 98877654333333323 47888 578898887652
Q ss_pred -------cEEEEEccCCCee--EE-----EEcccccceEeEEEcCCCCEEEEEECC----CcEEEEe----CCCCCCCCc
Q 012679 247 -------LIINNDVRVRDHI--VE-----TYRGHNQEVCGLKWSASGQQLASGGND----NLLHIWD----RSMASSNSV 304 (458)
Q Consensus 247 -------~i~vwd~~~~~~~--~~-----~~~~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd----~~~~~~~~~ 304 (458)
.|++||+.++... +. .+.+|...+..++|+||++++++.... ..|.+|| ..++..
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~--- 294 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC--- 294 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC---
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce---
Confidence 7889999866531 11 133688889999999998877775433 2488899 666544
Q ss_pred ceeeeee----ccccccee-----EEEecCCCCcEEE-EeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679 305 TQWLHRL----EEHTSAVK-----AIAWCPFQSNLLA-TGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374 (458)
Q Consensus 305 ~~~~~~~----~~h~~~v~-----~l~~~p~~~~ll~-s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 374 (458)
...+ ..|...+. .++|+|++..+++ +........|.+||+.+++..........+..+.+. +++.+
T Consensus 295 ---~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i 370 (719)
T 1z68_A 295 ---PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSL 370 (719)
T ss_dssp ---CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEE
T ss_pred ---EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEE
Confidence 2222 35666666 8899999887765 343223346888898877743322334457777777 88888
Q ss_pred EEEecC---CCCcEEEEeCCC--ce-eeEEEe----CCCCcEEEEEEcCCCCEEEEE-eCC--CcEEEEecCCCC
Q 012679 375 LSSHGF---TQNQLTLWKYPS--MV-KMAELS----GHTSRVLFMAQSPDGCTVASA-AAD--ETLRFWNVFGAP 436 (458)
Q Consensus 375 ~~~~g~---~d~~i~iwd~~~--~~-~~~~~~----~h~~~V~~l~~spdg~~l~s~-s~D--g~i~iW~~~~~~ 436 (458)
+.+... .++...+|.+.. +. ....+. +|...+..+.|+|||++++.. +.+ ..+.+|++.+++
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 371 FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 776421 157788888753 32 123333 266678899999999877644 333 468899987665
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=2.3e-16 Score=146.49 Aligned_cols=238 Identities=16% Similarity=0.169 Sum_probs=174.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC-----CCcccEEEEEe-C-CCeEEEEe-C-CCcEEEE
Q 012679 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG-----GHRSRVGSLAW-N-NHILTTGG-M-DGLIINN 251 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-----~~~~~v~~l~~-~-~~~l~sg~-~-dg~i~vw 251 (458)
++-..+.+++++++|+++++...++.|.+||.. ++.+..+.. ++...+..+++ + ...|+.++ . ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 345678999999999988888889999999987 566665542 24467889998 3 34444444 3 8899999
Q ss_pred EccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec--ccccceeEEEecCCCC
Q 012679 252 DVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE--EHTSAVKAIAWCPFQS 328 (458)
Q Consensus 252 d~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~ 328 (458)
|. .+.. +..+. .+...+.+++++++|+++++...++.|.+||.... . +..+. .+...+..++++|++.
T Consensus 106 d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~------~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 106 NQ-YGQF-VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V------LHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp CT-TSCE-EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E------EEEEECTTTCSSEEEEEECSSSE
T ss_pred CC-CCcE-EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-E------EEEeCCCCccCCcEEEEECCCCC
Confidence 94 3443 34443 34467899999999998888888899999996432 2 23332 3445688999999755
Q ss_pred cEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcCCCCeEEEEecCCCC-cEEEEeCCCceeeEEEeCCC-
Q 012679 329 NLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNERELLSSHGFTQN-QLTLWKYPSMVKMAELSGHT- 403 (458)
Q Consensus 329 ~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~d~-~i~iwd~~~~~~~~~~~~h~- 403 (458)
++++.. .++.|++||. +++.+..+... ..+..++++++++.+++. ..++ .|.+|+. +++.+..+..+.
T Consensus 177 -l~v~~~--~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~--~~~~~~i~~~~~-~g~~~~~~~~~~~ 249 (286)
T 1q7f_A 177 -IFISDN--RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD--NHNNFNLTIFTQ-DGQLISALESKVK 249 (286)
T ss_dssp -EEEEEG--GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE--CSSSCEEEEECT-TSCEEEEEEESSC
T ss_pred -EEEEEC--CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEe--CCCCEEEEEECC-CCCEEEEEcccCC
Confidence 666654 6889999997 56666666543 468899999999877764 3454 9999995 566666665544
Q ss_pred -CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 404 -SRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 404 -~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
..+.+++++|+|+++++ +.|+.|++|++....
T Consensus 250 ~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 250 HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 34789999999987776 679999999986543
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=1.6e-17 Score=161.32 Aligned_cols=275 Identities=12% Similarity=0.072 Sum_probs=180.7
Q ss_pred ccceeeccC-CC-eEEEEcC---CEEEEEECCCCCeeeEEEecCCCCC-EEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679 143 YLNLLDWGS-SN-VLAIALG---STVYLWDASDGTTSELVTVDDENGP-VTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 143 ~~~~~~~~~-~~-~la~~~d---~~v~iwd~~~~~~~~~~~~~~h~~~-V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
++..+.|++ +. ++.+... ..|++||+.+++...+ ..+... ...+.|+|||++|+.++.++.|.+||+.+++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l---~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL---TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC---CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe---ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 455677877 33 4444432 3799999998875332 222323 3347899999999999999999999999887
Q ss_pred eeEEecCCCcccEEE---EE----------------e--CCCeEEEE-----eCCCcEEEEEccCCCeeEEEEcccccce
Q 012679 217 QLRTLRGGHRSRVGS---LA----------------W--NNHILTTG-----GMDGLIINNDVRVRDHIVETYRGHNQEV 270 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~---l~----------------~--~~~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~~h~~~v 270 (458)
....... +...... +. | ++..++.+ ..+..|++||+.++.. ..+..+...+
T Consensus 114 ~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~ 190 (396)
T 3c5m_A 114 EQVIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWL 190 (396)
T ss_dssp EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCE
T ss_pred cEEEEec-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCccc
Confidence 6555543 3322211 21 2 22333322 3556899999987653 2333567788
Q ss_pred EeEEEcC-CCCEEEEEECC------CcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeC--CCCC
Q 012679 271 CGLKWSA-SGQQLASGGND------NLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGG--GGGD 339 (458)
Q Consensus 271 ~~l~~sp-d~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~--g~~d 339 (458)
..+.|+| +++.|+.++.+ ..|.+||+..... ..+..+ ...+..++|+|++..++++.. +..+
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-------eEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 9999999 88888777654 3688888765432 222222 335788999999888777642 1122
Q ss_pred CeEEEEECCCCCeeEEEeCCCCeEEEEEcC-CCCeEEEEec--------------CCCCcEEEEeCCCceeeEEEeCCCC
Q 012679 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNK-NERELLSSHG--------------FTQNQLTLWKYPSMVKMAELSGHTS 404 (458)
Q Consensus 340 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~g--------------~~d~~i~iwd~~~~~~~~~~~~h~~ 404 (458)
+.|++||+.+++......... .. +.|+| +++.++.+.+ ..+..|.+||+.+++.. .+..+..
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~ 340 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHST 340 (396)
T ss_dssp EEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCC
T ss_pred ceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCC
Confidence 459999999987655433332 33 89999 9997776431 13478999999887643 4444443
Q ss_pred -----------cEEEEEEcCCCCEEEEEeC-CCcEEEEecC
Q 012679 405 -----------RVLFMAQSPDGCTVASAAA-DETLRFWNVF 433 (458)
Q Consensus 405 -----------~V~~l~~spdg~~l~s~s~-Dg~i~iW~~~ 433 (458)
.+..++|+|||+.|+.++. ++...+|.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2567899999998887765 5666666654
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=5e-17 Score=171.51 Aligned_cols=275 Identities=12% Similarity=0.156 Sum_probs=180.2
Q ss_pred eeeccCCC-eEEEEcCCEEEEEECCCCCeeeEEEecCCCC-----CEEEEEEcCCCCEEEEEecC---------CeEEEE
Q 012679 146 LLDWGSSN-VLAIALGSTVYLWDASDGTTSELVTVDDENG-----PVTSVNWAPDGRHIAIGLNN---------CQVQLW 210 (458)
Q Consensus 146 ~~~~~~~~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~-----~V~~v~~s~~g~~la~g~~d---------g~v~iw 210 (458)
.+.|+++. +++.+ |+.|++||+.+++...+ +.+|.. ....++|||||++|++++.+ +.+.+|
T Consensus 21 ~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVF--LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CEEECSSSEEEEEE-TTEEEEEETTTCCEEEE--ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCcEEEEc-CCcEEEEECCCCceEEE--EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 57888754 45444 99999999999987443 444442 23458899999999999876 567799
Q ss_pred eCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccce-----------------E
Q 012679 211 DSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV-----------------C 271 (458)
Q Consensus 211 d~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v-----------------~ 271 (458)
|+.+++... +.. |...+...+| +|+.|+.+ .++.|++||+.++.....+..++...+ .
T Consensus 98 d~~~~~~~~-l~~-~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 98 DLNKRQLIT-EER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp ETTTTEECC-SSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred ECCCCcEEE-ccc-CCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 999988654 444 7788999999 57888887 468999999987664222222333222 3
Q ss_pred eEEEcCCCCEEEEEECCC------------------------------------cEEEEeCCC---CCCCCcceeeeeec
Q 012679 272 GLKWSASGQQLASGGNDN------------------------------------LLHIWDRSM---ASSNSVTQWLHRLE 312 (458)
Q Consensus 272 ~l~~spd~~~l~sg~~dg------------------------------------~i~iwd~~~---~~~~~~~~~~~~~~ 312 (458)
.+.|||||++||.++.|. .|++||+.+ +.... ...+.
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~----~~~l~ 250 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT----SIQIT 250 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC----EEEEC
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce----EEEec
Confidence 589999999999886332 477888877 52100 22232
Q ss_pred ------ccccceeEEEecCCCCcEEEEe-CCCCCCeEEEEECCCCC----eeE--EE---eCCCCe-----EEEEEcCCC
Q 012679 313 ------EHTSAVKAIAWCPFQSNLLATG-GGGGDRCIKFWNTHTGA----CLN--SV---DTGSQV-----CALLWNKNE 371 (458)
Q Consensus 313 ------~h~~~v~~l~~~p~~~~ll~s~-~g~~d~~i~lwd~~~~~----~~~--~~---~~~~~v-----~~~~~s~~~ 371 (458)
+|...+..++|+|++..++... .+..+..|.+||+.+++ +.. .+ .+...+ ....|+|+|
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 3777899999999987544432 22245579999999987 221 11 122223 378899999
Q ss_pred CeEE-EEecCCC--CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEecC
Q 012679 372 RELL-SSHGFTQ--NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-----ETLRFWNVF 433 (458)
Q Consensus 372 ~~l~-~~~g~~d--~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iW~~~ 433 (458)
+.++ .. ...+ ..|.+||..+++.. .+......|..+.. +|++.|+..+.. +...||.+.
T Consensus 331 ~~l~~~~-s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 331 NSFYKII-SNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp SEEEEEE-ECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CEEEEEE-EcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 9877 43 2233 46888888776544 34444455655442 346655544432 445555553
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=3.5e-17 Score=158.73 Aligned_cols=261 Identities=12% Similarity=0.039 Sum_probs=178.0
Q ss_pred EECCCCCeeeEEEecCCCCCEEE-----EEEcCCCCEEEEEec-CC--eEEEEeCCCceeeEEecCCCcccEEEEEe--C
Q 012679 166 WDASDGTTSELVTVDDENGPVTS-----VNWAPDGRHIAIGLN-NC--QVQLWDSTANRQLRTLRGGHRSRVGSLAW--N 235 (458)
Q Consensus 166 wd~~~~~~~~~~~~~~h~~~V~~-----v~~s~~g~~la~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~ 235 (458)
+|..++.. +..+..|...... .+|+|||++|+.++. +| .|.+||+.+++....... +...+..+.| +
T Consensus 15 ~~~~~g~~--~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spd 91 (388)
T 3pe7_A 15 QDASTGAQ--VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPD 91 (388)
T ss_dssp ECTTTCCE--EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTT
T ss_pred ecCCCCcc--eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCC
Confidence 45566654 5666666666666 889999999999987 66 488889998887665554 5555545566 5
Q ss_pred CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEE--EcCCCCEEEEE----------------------ECCCcE
Q 012679 236 NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK--WSASGQQLASG----------------------GNDNLL 291 (458)
Q Consensus 236 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~--~spd~~~l~sg----------------------~~dg~i 291 (458)
++.|+.++.++.|++||+.++.. ......+...+.... +++++++++.. ..+..|
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 78999999999999999998764 334444555454443 48999998743 244789
Q ss_pred EEEeCCCCCCCCcceeeeeecccccceeEEEecC-CCCcEEEEeCCCC---CCeEEEEECCCCCeeEEEeCC--CCeEEE
Q 012679 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP-FQSNLLATGGGGG---DRCIKFWNTHTGACLNSVDTG--SQVCAL 365 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~ll~s~~g~~---d~~i~lwd~~~~~~~~~~~~~--~~v~~~ 365 (458)
.+||+.++.. ..+..+...+..++|+| ++..++++..+.. ...|.++|...+......... ..+...
T Consensus 171 ~~~d~~~g~~-------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 171 MRVDLKTGES-------TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHE 243 (388)
T ss_dssp EEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEE
T ss_pred EEEECCCCce-------EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccc
Confidence 9999987653 44445667789999999 8887776654211 347888898766544333333 247788
Q ss_pred EEcCCCCeEEEEecCCCC---cEEEEeCCCcee--eEEEeCCCCc---EEEEEEcCCCCEEEEE---------eCCCcEE
Q 012679 366 LWNKNERELLSSHGFTQN---QLTLWKYPSMVK--MAELSGHTSR---VLFMAQSPDGCTVASA---------AADETLR 428 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~~d~---~i~iwd~~~~~~--~~~~~~h~~~---V~~l~~spdg~~l~s~---------s~Dg~i~ 428 (458)
.|+|+|+.|+.......+ .|.+||+.+++. +..+.++... ...++|+|||+.|+.. ..+..|+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 999999988665432222 499999998764 3344331110 1123799999988754 4567899
Q ss_pred EEecCCCCc
Q 012679 429 FWNVFGAPQ 437 (458)
Q Consensus 429 iW~~~~~~~ 437 (458)
+||+.++..
T Consensus 324 ~~d~~~~~~ 332 (388)
T 3pe7_A 324 VFNMKNGTQ 332 (388)
T ss_dssp EEETTTTEE
T ss_pred EEeccCCce
Confidence 999987543
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=7.1e-18 Score=178.03 Aligned_cols=241 Identities=13% Similarity=0.091 Sum_probs=168.9
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc-----EEEEEe--CCCeEEEEeCC---------CcE
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR-----VGSLAW--NNHILTTGGMD---------GLI 248 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-----v~~l~~--~~~~l~sg~~d---------g~i 248 (458)
...++.|+|||++++++ ||.|++||+.+++....+.. |... ...++| +++.|+.++.+ +.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 45689999999998886 99999999999988776665 4432 223555 67888888876 667
Q ss_pred EEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc------------
Q 012679 249 INNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS------------ 316 (458)
Q Consensus 249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~------------ 316 (458)
.+||+.+++. ..+..|...+...+|||||+.||.+. |+.|++||+..+... ..+..++..
T Consensus 95 ~~~d~~~~~~--~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~-----~lt~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 95 DIYDLNKRQL--ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY-----RITWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEETTTTEE--CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE-----ECCSCCBTTTEEESBCCHHHH
T ss_pred EEEECCCCcE--EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE-----EEcCCCCccceecCccccccc
Confidence 7999988763 45667788899999999999999985 689999998876541 111122222
Q ss_pred -----ceeEEEecCCCCcEEEEeC-------------------------------CCC--CCeEEEEECCC---CC--ee
Q 012679 317 -----AVKAIAWCPFQSNLLATGG-------------------------------GGG--DRCIKFWNTHT---GA--CL 353 (458)
Q Consensus 317 -----~v~~l~~~p~~~~ll~s~~-------------------------------g~~--d~~i~lwd~~~---~~--~~ 353 (458)
...+++|+||+..++.... |.. ...|++||+.+ ++ ..
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 2245899999888776531 001 12688999998 73 22
Q ss_pred EEEe-------CCCCeEEEEEcCCCCeEEEEecC--CCCcEEEEeCCCce----e--eEEE--eCCCCcEE-----EEEE
Q 012679 354 NSVD-------TGSQVCALLWNKNERELLSSHGF--TQNQLTLWKYPSMV----K--MAEL--SGHTSRVL-----FMAQ 411 (458)
Q Consensus 354 ~~~~-------~~~~v~~~~~s~~~~~l~~~~g~--~d~~i~iwd~~~~~----~--~~~~--~~h~~~V~-----~l~~ 411 (458)
..+. +...+..+.|+|+++.++..... .+..|.+||+.+++ + +..+ .+|...|. ..+|
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence 2332 33458899999999976654332 23479999998876 1 2222 45665554 7899
Q ss_pred cCCCCEEE-EEeC-CC--cEEEEecCCCC
Q 012679 412 SPDGCTVA-SAAA-DE--TLRFWNVFGAP 436 (458)
Q Consensus 412 spdg~~l~-s~s~-Dg--~i~iW~~~~~~ 436 (458)
+|||+.|+ ..+. +| .|.+|++.++.
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 99999877 6654 44 57788877554
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=2.5e-16 Score=151.52 Aligned_cols=267 Identities=10% Similarity=0.016 Sum_probs=183.8
Q ss_pred CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----------CCeEEEEeCCCceeeEEecCC-----
Q 012679 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----------NCQVQLWDSTANRQLRTLRGG----- 224 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----------dg~v~iwd~~~~~~~~~~~~~----- 224 (458)
|+.|++||..+++. +..+..+..+ .++|+|||++|+++.. ++.|.+||+.+++.+..+...
T Consensus 30 d~~v~v~D~~t~~~--~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYDYTNGKF--LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEETTTCCE--EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred cCeEEEEECCCCeE--EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 67999999999987 4555555444 8999999999999863 568999999999988887631
Q ss_pred CcccEEEEEe--CCCeEEEEeC--CCcEEEEEccCCCeeEEE-EcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCC
Q 012679 225 HRSRVGSLAW--NNHILTTGGM--DGLIINNDVRVRDHIVET-YRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 225 ~~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~~~~~~~~~~-~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~ 298 (458)
+......+++ ++++|+++.. ++.|.+||+.+.+. +.. +. +.. ...+.+.|++ ..+++.+.||.+.+|+...
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-VEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-EEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-EEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 1233445666 6788888764 58999999997753 444 33 222 2335667765 6788889999999999865
Q ss_pred CCCCC-cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--eEEEeCC-----------CCeEE
Q 012679 299 ASSNS-VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--LNSVDTG-----------SQVCA 364 (458)
Q Consensus 299 ~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~~~-----------~~v~~ 364 (458)
..... .......+..+..++ .+.+.+++..+++.. .++.+.++|+..+.. +..+... .....
T Consensus 183 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~ 258 (361)
T 2oiz_A 183 DGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNL 258 (361)
T ss_dssp TSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSC
T ss_pred CCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeE
Confidence 32200 000001122222222 233456665555543 678999999976542 2222211 11223
Q ss_pred EEEcCCCCeEEEEec-C--------CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 365 LLWNKNERELLSSHG-F--------TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 365 ~~~s~~~~~l~~~~g-~--------~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
++++|+++.++++.. . ..+.|.+||..+++.+.++..+. +.+++|+|||++|++++. ++|.+||..++
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 789999998887642 0 13589999999999999998877 899999999999998886 99999999988
Q ss_pred --Ccccc
Q 012679 436 --PQVIS 440 (458)
Q Consensus 436 --~~~~~ 440 (458)
+.+..
T Consensus 336 ~l~~~~~ 342 (361)
T 2oiz_A 336 EPKLLRT 342 (361)
T ss_dssp SCEEEEE
T ss_pred cceeeEE
Confidence 65544
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=1.6e-16 Score=165.41 Aligned_cols=281 Identities=11% Similarity=-0.001 Sum_probs=187.6
Q ss_pred ccceeeccCCCeEEEEc----CCEEEEEECCCCCeeeEEEecCCCCCEE---------EEEEc--CCCCE-EEEEec-CC
Q 012679 143 YLNLLDWGSSNVLAIAL----GSTVYLWDASDGTTSELVTVDDENGPVT---------SVNWA--PDGRH-IAIGLN-NC 205 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~----d~~v~iwd~~~~~~~~~~~~~~h~~~V~---------~v~~s--~~g~~-la~g~~-dg 205 (458)
.+..+.|+++.++.+.. ++...||....+.. ...+..|...+. ...|+ |||++ |+.+.. +.
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~ 102 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA--EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ 102 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC--EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC--cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence 56667788877666655 67888998543332 445555665666 56665 99998 776654 55
Q ss_pred eEEEEeCC--CceeeEEecCC----CcccEEEEEe--CCCeEEEEeCC----------CcEEEEEccCC-----CeeEEE
Q 012679 206 QVQLWDST--ANRQLRTLRGG----HRSRVGSLAW--NNHILTTGGMD----------GLIINNDVRVR-----DHIVET 262 (458)
Q Consensus 206 ~v~iwd~~--~~~~~~~~~~~----~~~~v~~l~~--~~~~l~sg~~d----------g~i~vwd~~~~-----~~~~~~ 262 (458)
.|.+|++. .......+... |...+.+++| +++.|++++.+ ..|++||+.+. .. ...
T Consensus 103 ~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~ 181 (662)
T 3azo_A 103 RLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRE 181 (662)
T ss_dssp CEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEE
T ss_pred eEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeE
Confidence 67777765 20334444431 5667888999 57889888876 58999999872 22 344
Q ss_pred Ec-ccccceEeEEEcCCCCEEEEEECC--------CcEEEEeCC-CCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679 263 YR-GHNQEVCGLKWSASGQQLASGGND--------NLLHIWDRS-MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332 (458)
Q Consensus 263 ~~-~h~~~v~~l~~spd~~~l~sg~~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~ 332 (458)
+. .+...+..++|+|||++|+.++.+ ..|++||+. ++... ........|...+..++|+|++. +++
T Consensus 182 l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~~l~~~~~~~~~~~~~spdg~-l~~ 257 (662)
T 3azo_A 182 LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTRTLLGGPEEAIAQAEWAPDGS-LIV 257 (662)
T ss_dssp SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEEEEEEETTBCEEEEEECTTSC-EEE
T ss_pred EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccEEeCCCCCceEcceEECCCCe-EEE
Confidence 55 566788899999999999988755 379999998 34110 11222334567899999999988 777
Q ss_pred EeCCCCCC--eEEEEECCCCCeeEEEeCCCC---------eEEEEEcCCCCeEEEEecCCCCcEEEE--eCCCceeeEEE
Q 012679 333 TGGGGGDR--CIKFWNTHTGACLNSVDTGSQ---------VCALLWNKNERELLSSHGFTQNQLTLW--KYPSMVKMAEL 399 (458)
Q Consensus 333 s~~g~~d~--~i~lwd~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~g~~d~~i~iw--d~~~~~~~~~~ 399 (458)
++. .++ .|.+||..+++.......... +..++|+++++.++++. . +.++|| |..+++ +..+
T Consensus 258 ~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~d~~~~~-~~~l 331 (662)
T 3azo_A 258 ATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG--K-GAAVLGILDPESGE-LVDA 331 (662)
T ss_dssp EEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB--S-SSCEEEEEETTTTE-EEEC
T ss_pred EEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE--c-CccEEEEEECCCCc-EEEe
Confidence 665 566 777788777776544433221 45788999999887753 5 777888 655555 6778
Q ss_pred eCCCCcEEEE-EEcCCCCEEEEEeCCCcEEE--EecCCCC
Q 012679 400 SGHTSRVLFM-AQSPDGCTVASAAADETLRF--WNVFGAP 436 (458)
Q Consensus 400 ~~h~~~V~~l-~~spdg~~l~s~s~Dg~i~i--W~~~~~~ 436 (458)
..|...+..+ +++++.-++++++.+....+ |++.+++
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8888778777 55444434455566654444 4554544
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=3.5e-16 Score=150.51 Aligned_cols=260 Identities=9% Similarity=0.063 Sum_probs=182.8
Q ss_pred eeeccC-CC-eEEEE----------cCCEEEEEECCCCCeeeEEEecC----CCCCEEEEEEcCCCCEEEEEec--CCeE
Q 012679 146 LLDWGS-SN-VLAIA----------LGSTVYLWDASDGTTSELVTVDD----ENGPVTSVNWAPDGRHIAIGLN--NCQV 207 (458)
Q Consensus 146 ~~~~~~-~~-~la~~----------~d~~v~iwd~~~~~~~~~~~~~~----h~~~V~~v~~s~~g~~la~g~~--dg~v 207 (458)
.+.+++ ++ ++++. .++.|.+||..+++......+.. +......++++|||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 567776 33 44443 25689999999887744333321 2345678999999999999874 5799
Q ss_pred EEEeCCCceeeEE-ecCCCcccEEEEEe-C-CCeEEEEeCCCcEEEEEccCCCeeEEE------EcccccceEeEEEcCC
Q 012679 208 QLWDSTANRQLRT-LRGGHRSRVGSLAW-N-NHILTTGGMDGLIINNDVRVRDHIVET------YRGHNQEVCGLKWSAS 278 (458)
Q Consensus 208 ~iwd~~~~~~~~~-~~~~~~~~v~~l~~-~-~~~l~sg~~dg~i~vwd~~~~~~~~~~------~~~h~~~v~~l~~spd 278 (458)
.+||+.+++.+.. +.. ........+ + +..+++.+.||.+.+|++......... +..+..++ .+.++++
T Consensus 134 ~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred EEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence 9999999998888 653 222111122 2 367888999999999998764433311 11122222 2344677
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec--c----c----ccceeEEEecCCCCcEEEEeC--CC------CCC
Q 012679 279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE--E----H----TSAVKAIAWCPFQSNLLATGG--GG------GDR 340 (458)
Q Consensus 279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~----h----~~~v~~l~~~p~~~~ll~s~~--g~------~d~ 340 (458)
+..++..+.++.|.++|+....... ...+. . + ......++++|++..++++.. +. ..+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~----~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKV----DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEE----EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred CCEEEEEeCCCeEEEEEecCCCcee----cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 8888888899999999987554210 11111 0 0 111223789999888887642 10 135
Q ss_pred eEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc--eeeEEEeCCCCcEEEEEEcCCCC
Q 012679 341 CIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM--VKMAELSGHTSRVLFMAQSPDGC 416 (458)
Q Consensus 341 ~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~--~~~~~~~~h~~~V~~l~~spdg~ 416 (458)
.|.+||+.+++.+..+..+. +..++|+|++++|+++. . +.|.+||..++ +.+.++..+......++++|+|.
T Consensus 287 ~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n--~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD--G-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC--S-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC--C-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 89999999999999999888 99999999999988864 3 99999999999 99999877777889999999986
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.76 E-value=7.7e-16 Score=146.14 Aligned_cols=270 Identities=8% Similarity=0.048 Sum_probs=184.1
Q ss_pred ceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 145 NLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 145 ~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
+.+.|++ ..++.++.++.+..|. ++. ...+..+...+.+++|+++|++++++..++.|.+||..+++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~ 83 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTIT---AEP--WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV 83 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEEE---CEE--EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred ceeeecCCccceeEEeecccCcccc---cce--eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence 3444544 2344445677788882 222 44555667778999999999988888889999999998887655443
Q ss_pred CCCcccEEEEEeC--CCeEEEEeCC----CcEEEEEccCCCeeEEEEc--ccccceEeEEEcCCCCEEEEEEC------C
Q 012679 223 GGHRSRVGSLAWN--NHILTTGGMD----GLIINNDVRVRDHIVETYR--GHNQEVCGLKWSASGQQLASGGN------D 288 (458)
Q Consensus 223 ~~~~~~v~~l~~~--~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~------d 288 (458)
. +...+.+++++ +.++++...+ +.|.+||..+.... ..+. .+...+.++.++|+|+++++... .
T Consensus 84 ~-~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 84 S-HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp C-SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred C-CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-EEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 3 66789999995 5666666665 68999998866532 1222 34457899999999988877654 3
Q ss_pred CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-CCeeEEE------eC--C
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-GACLNSV------DT--G 359 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~~~~~~------~~--~ 359 (458)
+.|..+|...... ..+..+...+..++|+|++..++++.. .++.|.+||..+ +..+..+ .. .
T Consensus 162 ~~l~~~~~~~~~~-------~~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 232 (333)
T 2dg1_A 162 GGVYYVSPDFRTV-------TPIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGH 232 (333)
T ss_dssp EEEEEECTTSCCE-------EEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred ceEEEEeCCCCEE-------EEeecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCC
Confidence 5566666544322 222233345788999998877777654 678999999964 4433211 11 2
Q ss_pred CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC------cEEEEEEcCCCCEEEEEeCCC----cEEE
Q 012679 360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS------RVLFMAQSPDGCTVASAAADE----TLRF 429 (458)
Q Consensus 360 ~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~------~V~~l~~spdg~~l~s~s~Dg----~i~i 429 (458)
..+..++++++++.+++.. .++.|.+||. +++.+..+..+.. .+.+++|+||+..|+.++.++ .-.|
T Consensus 233 ~~~~~i~~d~~G~l~v~~~--~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l 309 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMY--GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSML 309 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEE--TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEE
T ss_pred CCCCceEECCCCCEEEEEc--CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceE
Confidence 3578899999998777643 5789999998 5666666654433 689999999987776555553 3445
Q ss_pred EecC
Q 012679 430 WNVF 433 (458)
Q Consensus 430 W~~~ 433 (458)
|.+.
T Consensus 310 ~~~~ 313 (333)
T 2dg1_A 310 YTVN 313 (333)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
No 173
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=8.4e-16 Score=161.40 Aligned_cols=265 Identities=9% Similarity=0.083 Sum_probs=182.7
Q ss_pred EEEEEECCCCCeeeEEEe----cCCCCCEEEEEEcCCCCEEEEEecCC-----eEEEEeCCCceeeEEecCCCcccEEEE
Q 012679 162 TVYLWDASDGTTSELVTV----DDENGPVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTANRQLRTLRGGHRSRVGSL 232 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~----~~h~~~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~~~~~~~~~~v~~l 232 (458)
.+++.+..+++...+... .+|...+..++|||||++||.+..++ .|++||+.+++.+.... ....+..+
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~~~~~~~ 176 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCM 176 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCE
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cCcccceE
Confidence 445555545544333221 12444688999999999999887654 89999999998776433 22236678
Q ss_pred Ee--CCCeEEEEeCCCc----------------EEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEEC----
Q 012679 233 AW--NNHILTTGGMDGL----------------IINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGN---- 287 (458)
Q Consensus 233 ~~--~~~~l~sg~~dg~----------------i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~~---- 287 (458)
+| +++.|+.++.++. |++|++.++.. ++.....|...+.++.|+|||++|+.++.
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 256 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence 89 5788888887765 99999987652 22222335566889999999999988765
Q ss_pred -CCcEEEEeCCC------CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC-CCCCeEEEEECCCCCe--eEEE-
Q 012679 288 -DNLLHIWDRSM------ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWNTHTGAC--LNSV- 356 (458)
Q Consensus 288 -dg~i~iwd~~~------~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g-~~d~~i~lwd~~~~~~--~~~~- 356 (458)
+..|++||+.. +... ...+..+...+.. .|+|++..+++.+.. .....|.+||+.++.. ...+
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~~~-----~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGILK-----WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSSCC-----CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred CccEEEEEECcccccccCCccc-----eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence 67899999876 3211 3445555555554 488888888777641 1245799999988752 2333
Q ss_pred eCCC--CeEEEEEcCCCCeEEEEecCCCC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEE-e---CCCcEE
Q 012679 357 DTGS--QVCALLWNKNERELLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA-A---ADETLR 428 (458)
Q Consensus 357 ~~~~--~v~~~~~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s---~Dg~i~ 428 (458)
.... .+..+.|++++..+++.. .++ .|.+|++.+++.+..+..+.+.|..++++|++..|+.. + ..++|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~lv~~~~--~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 408 (710)
T 2xdw_A 331 PEHEKDVLEWVACVRSNFLVLCYL--HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY 408 (710)
T ss_dssp CCCSSCEEEEEEEETTTEEEEEEE--ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred CCCCCCeEEEEEEEcCCEEEEEEE--ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence 3322 477889986666665543 455 56778887788778888888889999999999766533 2 347899
Q ss_pred EEecCCCC
Q 012679 429 FWNVFGAP 436 (458)
Q Consensus 429 iW~~~~~~ 436 (458)
.||+.+++
T Consensus 409 ~~d~~tg~ 416 (710)
T 2xdw_A 409 HCDLTKEE 416 (710)
T ss_dssp EEETTSSS
T ss_pred EEECCCCc
Confidence 99997765
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=1.7e-15 Score=144.50 Aligned_cols=240 Identities=12% Similarity=0.146 Sum_probs=164.1
Q ss_pred CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---C--eEEEEeCCCceeeEEecCCCcccEEEEEe
Q 012679 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---C--QVQLWDSTANRQLRTLRGGHRSRVGSLAW 234 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 234 (458)
++.|++||+.+++...+ ..+..++|+|||++||.++.+ + .|.+||+.+++....... .. +..++|
T Consensus 42 ~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEEE
T ss_pred cceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-ccceeE
Confidence 56899999999875433 358899999999999988754 3 478889888876655543 33 899999
Q ss_pred --CCCeEEEEeCC---------------------------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679 235 --NNHILTTGGMD---------------------------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG 285 (458)
Q Consensus 235 --~~~~l~sg~~d---------------------------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg 285 (458)
+++.|+.++.+ ..|++||+.++.. +..+.. . .+..+.|+||| +++++
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe-EEEEE
Confidence 46777777632 5789999987653 133333 3 78899999999 77777
Q ss_pred ECCC-------cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC-----CCCeEEEEECCCCCee
Q 012679 286 GNDN-------LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG-----GDRCIKFWNTHTGACL 353 (458)
Q Consensus 286 ~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~-----~d~~i~lwd~~~~~~~ 353 (458)
..++ ...||.+..+. ...+..+ ..+..+ +|++..+++.+... ....|.+|| +++..
T Consensus 188 ~~~~~~~~~~~~~~l~~~d~~~-------~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~ 255 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWEDGK-------EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM 255 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEETTE-------EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred ecccccccccccccEEEeCCCc-------eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE
Confidence 6542 34455444222 2333334 444444 99988887766311 135788888 56544
Q ss_pred EEEeC-CCCeEE-EEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcE-EEE
Q 012679 354 NSVDT-GSQVCA-LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETL-RFW 430 (458)
Q Consensus 354 ~~~~~-~~~v~~-~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i-~iW 430 (458)
..... ...+.. +.|+ ++ .+++ +..++.++|| +.+++. ..+..+...|.+++|+| .++++++.++.. .+|
T Consensus 256 ~l~~~~~~~~~~~~~~s-dg-~~~~--~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 256 GILDEVDRGVGQAKIKD-GK-VYFT--LFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp ESSTTCCSEEEEEEEET-TE-EEEE--EEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred eccccCCcccCCccEEc-Cc-EEEE--EecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 33333 345675 8999 87 5555 3468899999 876554 44445678899999999 678888877765 788
Q ss_pred ecC
Q 012679 431 NVF 433 (458)
Q Consensus 431 ~~~ 433 (458)
.+.
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 776
No 175
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=6.7e-16 Score=148.81 Aligned_cols=246 Identities=5% Similarity=0.022 Sum_probs=163.1
Q ss_pred cceeeccC-CC-eEEEEcCCEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCCCCE--EEEEe-------------cCC
Q 012679 144 LNLLDWGS-SN-VLAIALGSTVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPDGRH--IAIGL-------------NNC 205 (458)
Q Consensus 144 ~~~~~~~~-~~-~la~~~d~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~g~~--la~g~-------------~dg 205 (458)
...+.|++ ++ +++++.+ .|.+|++. +++...+.....+ +.+.+++|+|+|++ ++++. .+|
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 45577776 34 5555555 99999997 7776444333322 23567899999995 44543 689
Q ss_pred eEEEEeCC-CceeeEEecC---CCcccEEEEEeC--CCeEEEEeC-CCcEEEEEcc-CCCee-EEEEc--ccccceEeEE
Q 012679 206 QVQLWDST-ANRQLRTLRG---GHRSRVGSLAWN--NHILTTGGM-DGLIINNDVR-VRDHI-VETYR--GHNQEVCGLK 274 (458)
Q Consensus 206 ~v~iwd~~-~~~~~~~~~~---~~~~~v~~l~~~--~~~l~sg~~-dg~i~vwd~~-~~~~~-~~~~~--~h~~~v~~l~ 274 (458)
.+.+|++. .++....+.. .+...+.+++|+ +++|++++. ++.|.+||+. ++... +..+. .|...+..++
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence 99999997 4554433331 245678899994 677777654 6899999997 55421 22333 2456789999
Q ss_pred EcCCCCEEEEEEC-CCcEEEEeCCC--CCCCCcceeeeeec----cccc------ceeEEE-ecCCCCcEEEEeCCCCC-
Q 012679 275 WSASGQQLASGGN-DNLLHIWDRSM--ASSNSVTQWLHRLE----EHTS------AVKAIA-WCPFQSNLLATGGGGGD- 339 (458)
Q Consensus 275 ~spd~~~l~sg~~-dg~i~iwd~~~--~~~~~~~~~~~~~~----~h~~------~v~~l~-~~p~~~~ll~s~~g~~d- 339 (458)
|+|||++|++++. ++.|.+|++.. +........+..+. +|.. .+..++ |+|+++.++++..+ .+
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-~~~ 278 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-NKF 278 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-SST
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-CCC
Confidence 9999999988775 78999998753 22100000011221 2222 578999 99998888766531 22
Q ss_pred ---CeEEEEECC-CCCeeE---EEe-CCCCeEEEEEcC---CCCeEEEEecCCCCcEEEEeCCCc
Q 012679 340 ---RCIKFWNTH-TGACLN---SVD-TGSQVCALLWNK---NERELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 340 ---~~i~lwd~~-~~~~~~---~~~-~~~~v~~~~~s~---~~~~l~~~~g~~d~~i~iwd~~~~ 393 (458)
+.|.+|++. +++... .+. ....+..++|+| ++++|+++. ..++.|.+|++...
T Consensus 279 ~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~-~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 279 ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD-DQEGWLEIYRWKDE 342 (365)
T ss_dssp TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC-SSSCEEEEEEEETT
T ss_pred CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE-cCCCeEEEEEEchh
Confidence 289999996 666543 233 344577889999 899998863 34689999998655
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=2e-14 Score=134.02 Aligned_cols=237 Identities=10% Similarity=0.060 Sum_probs=170.6
Q ss_pred EecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEcc
Q 012679 178 TVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVR 254 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~ 254 (458)
.+..+.....+++|+|+|+ +++++..++.|..||..++ ...+.. +...+.+++++ +.++++...++.|.+||..
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-PSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES-SCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC-CCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 3334566788999999998 7788888999999999887 555554 66788999994 6777666667899999997
Q ss_pred CCCeeEEEEcc----cccceEeEEEcCCCCEEEEE----E-------------CCCcEEEEeCCCCCCCCcceeeeeecc
Q 012679 255 VRDHIVETYRG----HNQEVCGLKWSASGQQLASG----G-------------NDNLLHIWDRSMASSNSVTQWLHRLEE 313 (458)
Q Consensus 255 ~~~~~~~~~~~----h~~~v~~l~~spd~~~l~sg----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 313 (458)
++.. ...... ....+..++++|+|+++++. + ..+.|..++.. + . ...+..
T Consensus 99 ~g~~-~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~------~~~~~~ 169 (296)
T 3e5z_A 99 GGEW-ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-T------LSAPIR 169 (296)
T ss_dssp TCCE-EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-C------EEEEEC
T ss_pred CCcE-EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-C------EEEeec
Confidence 6653 222111 12346789999999988873 2 13456666644 2 2 333445
Q ss_pred cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCe---eEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGAC---LNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLW 388 (458)
Q Consensus 314 h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~---~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw 388 (458)
+......++|+|++..+ ++.. .++.|.+||+. ++.. ...+. ....+..++++++|+.+++. ++.|.+|
T Consensus 170 ~~~~~~gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~----~~~v~~~ 242 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA----GDGVHVL 242 (296)
T ss_dssp CCSSEEEEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE----TTEEEEE
T ss_pred CCCCCccEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc----CCeEEEE
Confidence 56677899999988777 7665 78899999987 5654 23331 23446789999999866653 6789999
Q ss_pred eCCCceeeEEEeCCCCcEEEEEE-cCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 389 KYPSMVKMAELSGHTSRVLFMAQ-SPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 389 d~~~~~~~~~~~~h~~~V~~l~~-spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
+.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+|.+......
T Consensus 243 ~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~---~l~~~~~~~~~ 288 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST---EFWSIETNVRG 288 (296)
T ss_dssp CTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT---EEEEEECSCCB
T ss_pred CCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC---eEEEEEccccc
Confidence 986 778888887777 999999 6899999888877 45555544433
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=3.9e-14 Score=143.55 Aligned_cols=268 Identities=10% Similarity=0.078 Sum_probs=194.3
Q ss_pred EEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC--CceeeEEecCCCcccEEEE
Q 012679 155 LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST--ANRQLRTLRGGHRSRVGSL 232 (458)
Q Consensus 155 la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~l 232 (458)
++...++.|.++|..++++ +.++.. ...+..+.|+|||+++++++.++.|.+||+. +++.+.++..+. ....+
T Consensus 171 V~~~~~~~V~viD~~t~~v--~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--~P~~i 245 (567)
T 1qks_A 171 VTLRDAGQIALIDGSTYEI--KTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--EARSI 245 (567)
T ss_dssp EEETTTTEEEEEETTTCCE--EEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--EEEEE
T ss_pred EEeCCCCeEEEEECCCCeE--EEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC--CCcee
Confidence 3344578999999999987 444443 3467899999999999999999999999995 888888887523 34566
Q ss_pred EeC------CCeEEEEe-CCCcEEEEEccCCCeeEEEEcc----------ccc-ceEeEEEcCCCCEE-EEEECCCcEEE
Q 012679 233 AWN------NHILTTGG-MDGLIINNDVRVRDHIVETYRG----------HNQ-EVCGLKWSASGQQL-ASGGNDNLLHI 293 (458)
Q Consensus 233 ~~~------~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~----------h~~-~v~~l~~spd~~~l-~sg~~dg~i~i 293 (458)
+++ ++++++++ .++.|.++|..+.+. +..+.. |.. .+..+..++++..+ +....+|.|.+
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 664 66666665 469999999887664 333321 222 57788889886655 44456799999
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCe---EEEE-Ec
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQV---CALL-WN 368 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v---~~~~-~s 368 (458)
+|....... .+..+ ........+.|+|++.+++++.. .++.|.++|+.+++.+..+.. +... .... ++
T Consensus 325 vd~~~~~~~----~v~~i-~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~ 397 (567)
T 1qks_A 325 VDYTDLNNL----KTTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 397 (567)
T ss_dssp EETTCSSEE----EEEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred EecCCCccc----eeeee-eccccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeEC
Confidence 998765421 02222 22344667899999999988876 678999999999998888876 3211 1222 58
Q ss_pred CCCCeEEEEecCCCCcEEEEeCCC-------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC-------CCcEEEEecCC
Q 012679 369 KNERELLSSHGFTQNQLTLWKYPS-------MVKMAELSGHTSRVLFMAQSPDGCTVASAAA-------DETLRFWNVFG 434 (458)
Q Consensus 369 ~~~~~l~~~~g~~d~~i~iwd~~~-------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-------Dg~i~iW~~~~ 434 (458)
|++..++++....++.|.++|..+ ++.+.++......-..+..+|++++|..... .++|.++|+.+
T Consensus 398 p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 398 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 886666655444578999999988 7788888765444456889999999987663 35999999987
Q ss_pred C
Q 012679 435 A 435 (458)
Q Consensus 435 ~ 435 (458)
.
T Consensus 478 ~ 478 (567)
T 1qks_A 478 M 478 (567)
T ss_dssp C
T ss_pred c
Confidence 6
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=6.3e-16 Score=149.99 Aligned_cols=259 Identities=10% Similarity=0.035 Sum_probs=169.7
Q ss_pred EEEECCCCCeeeEEEecCCCCC-----EEEEEEcCCCCEEEEEecC---CeEEEEeCCCceeeEEecCCCcccEEEEEe-
Q 012679 164 YLWDASDGTTSELVTVDDENGP-----VTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQLRTLRGGHRSRVGSLAW- 234 (458)
Q Consensus 164 ~iwd~~~~~~~~~~~~~~h~~~-----V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~- 234 (458)
..+|..++.. +..+..+... +.+++|+|||++|+.+... ..|.+||+.+++....... +......+.|
T Consensus 13 ~~~d~~~g~~--~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~s 89 (396)
T 3c5m_A 13 TFVDSDTQVK--VTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG-KGDNTFGGFIS 89 (396)
T ss_dssp EEECTTTCCE--EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCS-SCBCTTTCEEC
T ss_pred eeecCCCCcc--eEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecC-CCCccccceEC
Confidence 3446677764 4444444333 6788999999998887653 3788899988876543332 3222323566
Q ss_pred -CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEe-------------------EEEcCCCCEEEEE-----ECCC
Q 012679 235 -NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCG-------------------LKWSASGQQLASG-----GNDN 289 (458)
Q Consensus 235 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-------------------l~~spd~~~l~sg-----~~dg 289 (458)
+++.|+.++.++.|++||+.++.. ......+...... +.|+|+++.++.+ ..+.
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEE-QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCc-EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 578999999999999999987653 2333323332222 3567888776654 4567
Q ss_pred cEEEEeCCCCCCCCcceeeeeecccccceeEEEecC-CCCcEEEEeCCCCC---CeEEEEECCCCCeeEEEeC--CCCeE
Q 012679 290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP-FQSNLLATGGGGGD---RCIKFWNTHTGACLNSVDT--GSQVC 363 (458)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~ll~s~~g~~d---~~i~lwd~~~~~~~~~~~~--~~~v~ 363 (458)
.|.+||+.++.. ..+..+...+..++|+| ++..++++..+..+ ..|.+||+.+++....... ...+.
T Consensus 169 ~l~~~d~~~g~~-------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 169 RLIKVDIETGEL-------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT 241 (396)
T ss_dssp EEEEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred eEEEEECCCCcE-------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence 899999887653 23334667788999999 66666665432111 5799999877654433332 22477
Q ss_pred EEEEcCCCCeEEEEecC-CC--CcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCCEEEEEe----------------C
Q 012679 364 ALLWNKNERELLSSHGF-TQ--NQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAA----------------A 423 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~-~d--~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s----------------~ 423 (458)
.+.|+|+++.|+.+... .. +.|.+||+.+++...... ... .. +.|+| ||+++++++ .
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN 318 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence 89999999988765321 12 449999998876543222 112 23 89999 999888765 3
Q ss_pred CCcEEEEecCCCC
Q 012679 424 DETLRFWNVFGAP 436 (458)
Q Consensus 424 Dg~i~iW~~~~~~ 436 (458)
++.|++||+.++.
T Consensus 319 ~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 319 DPFLYVLNTKAKS 331 (396)
T ss_dssp CCEEEEEETTTTB
T ss_pred CCcEEEEecccCc
Confidence 4789999997664
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=1.8e-15 Score=157.58 Aligned_cols=242 Identities=8% Similarity=-0.039 Sum_probs=168.6
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEE--ecCCeEEEEeCCCceeeEEecCCCcccEE---------EEEe----CCCe-EEEE
Q 012679 179 VDDENGPVTSVNWAPDGRHIAIG--LNNCQVQLWDSTANRQLRTLRGGHRSRVG---------SLAW----NNHI-LTTG 242 (458)
Q Consensus 179 ~~~h~~~V~~v~~s~~g~~la~g--~~dg~v~iwd~~~~~~~~~~~~~~~~~v~---------~l~~----~~~~-l~sg 242 (458)
+.+|...|..++|++++-+++.. ..++...||....+...+.+.. +...+. ...| +++. |+.+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP-APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC-TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC-CCccccccccccCCccceeeeecCCCeEEEEE
Confidence 45678889999999887666666 4578899998655555566655 544444 4434 4676 6655
Q ss_pred eC-CCcEEEEEcc--C-CCeeEEEEcc-----cccceEeEEEcCCCCEEEEEECC----------CcEEEEeCCC-----
Q 012679 243 GM-DGLIINNDVR--V-RDHIVETYRG-----HNQEVCGLKWSASGQQLASGGND----------NLLHIWDRSM----- 298 (458)
Q Consensus 243 ~~-dg~i~vwd~~--~-~~~~~~~~~~-----h~~~v~~l~~spd~~~l~sg~~d----------g~i~iwd~~~----- 298 (458)
+. +..|.++++. . +. ...+.. |...+.+++|+|||+.|++++.| ..|++||+..
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 43 5677777765 2 32 344444 67788999999999999998877 5899999887
Q ss_pred -CCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCC-----CCCeEEEEECC-CC---CeeEEEeC-CCCeEEEE
Q 012679 299 -ASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGG-----GDRCIKFWNTH-TG---ACLNSVDT-GSQVCALL 366 (458)
Q Consensus 299 -~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~-----~d~~i~lwd~~-~~---~~~~~~~~-~~~v~~~~ 366 (458)
+. ...+. .+...+..++|+|++..++++.... ....|++||+. ++ +....... ...+..+.
T Consensus 176 ~~~-------~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 176 RSA-------VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp GGG-------SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred CCc-------eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 33 23444 5567788999999988887665311 11479999999 57 34333333 56789999
Q ss_pred EcCCCCeEEEEecCCCC--cEEEEeCCCceeeEEEeCCCCc--------EEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 367 WNKNERELLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSR--------VLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 367 ~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~--------V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
|+|+|+.++++ ..++ .|.+||..+++.......+... +..++|+|+++++++++. +.++||.+.
T Consensus 249 ~spdg~l~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 249 WAPDGSLIVAT--DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp ECTTSCEEEEE--CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred ECCCCeEEEEE--CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 99999955543 3566 6777776666544333333222 567899999999999999 999999554
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=2.4e-14 Score=131.35 Aligned_cols=238 Identities=8% Similarity=-0.034 Sum_probs=165.3
Q ss_pred CEEEEEEcCCCCEEE-EEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 185 PVTSVNWAPDGRHIA-IGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 185 ~V~~v~~s~~g~~la-~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
...+++++++|++++ +...++.|.+||..+.... .+...+...+.+++++ +.++++.. ++.|.+||...... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--T 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--e
Confidence 688999999999666 4467889999997665432 2222244567788885 56555544 88999999875442 2
Q ss_pred EEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC
Q 012679 262 TYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR 340 (458)
Q Consensus 262 ~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~ 340 (458)
.+. .....+.+++++++|+++++...++.|.+|+...... ..........+..+++++++. ++++.. .++
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~------~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~ 171 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ------TVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNN 171 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC------EECCCCSCCSCCCEEECTTCC-EEEEEG--GGT
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee------EeeccccCCCceeEEEeCCCC-EEEEEC--CCC
Confidence 222 2335688999999999888877788999997554332 111222334678899999765 666654 578
Q ss_pred eEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEE
Q 012679 341 CIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA 419 (458)
Q Consensus 341 ~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 419 (458)
.|.+||...+......... ..+..+++++++..+++ ...++.|.+|+............+...+.+++++++|++++
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEE--ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence 9999998877654433222 56889999999966655 33578999999876544332223346789999999999889
Q ss_pred EEeCCCcEEEEecCCCCc
Q 012679 420 SAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 420 s~s~Dg~i~iW~~~~~~~ 437 (458)
+...++.|+++++...+.
T Consensus 250 ~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEGGGTEEEEECCCGGGS
T ss_pred EECCCCEEEEEcCCCccc
Confidence 888999999999876554
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=7.8e-14 Score=129.24 Aligned_cols=231 Identities=10% Similarity=0.151 Sum_probs=162.4
Q ss_pred cceeeccC-CCeEEE-EcCCEEEEEECCCCCeeeEEEec------CCCCCEEEEEE-cCCCCEEEEEec-CCeEEEEeCC
Q 012679 144 LNLLDWGS-SNVLAI-ALGSTVYLWDASDGTTSELVTVD------DENGPVTSVNW-APDGRHIAIGLN-NCQVQLWDST 213 (458)
Q Consensus 144 ~~~~~~~~-~~~la~-~~d~~v~iwd~~~~~~~~~~~~~------~h~~~V~~v~~-s~~g~~la~g~~-dg~v~iwd~~ 213 (458)
...+.+++ ++++++ ..++.|++||.. ++. +..+. ++...+.++++ .++++++++... ++.|.+|| .
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~ 107 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q 107 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence 34455655 455555 457899999987 444 23332 23457899999 467766666543 78999999 6
Q ss_pred CceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEc--ccccceEeEEEcCCCCEEEEEECCC
Q 012679 214 ANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYR--GHNQEVCGLKWSASGQQLASGGNDN 289 (458)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~dg 289 (458)
+++.+..+...+...+.+++++ +.++++...++.|.+||... . .+..+. .+...+.+++++++|+++++...++
T Consensus 108 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 185 (286)
T 1q7f_A 108 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 185 (286)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCCEEEEECCCC
Confidence 6777777754455678899984 67777777889999999653 3 233332 4456789999999999888888899
Q ss_pred cEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeCCCCCC-eEEEEECCCCCeeEEEeCC---CCeE
Q 012679 290 LLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGGGGGDR-CIKFWNTHTGACLNSVDTG---SQVC 363 (458)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~g~~d~-~i~lwd~~~~~~~~~~~~~---~~v~ 363 (458)
.|++||.... . +..+..+ ...+..+++++++ .++++.. .++ .|.+||. +++.+..+... ..+.
T Consensus 186 ~i~~~~~~g~-~------~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 186 CVKVFNYEGQ-Y------LRQIGGEGITNYPIGVGINSNG-EILIADN--HNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EEEEEETTCC-E------EEEESCTTTSCSEEEEEECTTC-CEEEEEC--SSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred EEEEEcCCCC-E------EEEEccCCccCCCcEEEECCCC-CEEEEeC--CCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 9999997432 2 3344332 3568899999976 5666654 554 9999995 57777766543 2477
Q ss_pred EEEEcCCCCeEEEEecCCCCcEEEEeCCCce
Q 012679 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMV 394 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~ 394 (458)
.++++++++.+++ . .++.|++|++....
T Consensus 255 ~i~~~~~g~l~vs-~--~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 255 DVALMDDGSVVLA-S--KDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEETTTEEEEE-E--TTTEEEEEECSCCC
T ss_pred eEEECCCCcEEEE-C--CCCeEEEEEccccc
Confidence 9999999975555 3 48999999986543
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=2.4e-12 Score=119.44 Aligned_cols=271 Identities=7% Similarity=-0.066 Sum_probs=184.9
Q ss_pred ccceeeccC-CCeEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGS-SNVLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.+..+..++ ++++.+.. ++.|.+||.. ++... .....+...+.+++++++|.+.++...++.|..||.. ++. ..
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~ 91 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KE 91 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EE
Confidence 345566655 56666665 6899999988 66532 2333345779999999999987777668899999976 332 22
Q ss_pred ecC-CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 221 LRG-GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 221 ~~~-~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
+.. .....+.+++++ +.++++...++.|..||. ++.........+...+.++++.++|+++++...++.|.+||.
T Consensus 92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~- 169 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE- 169 (299)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-
Confidence 321 145578888885 566666667889999998 444322223334567899999999988887777889999998
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNEREL 374 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l 374 (458)
.+... ...+..+...+..+++.+++. ++++.. .++.|..||. +++... +.. ...+..++++++++.+
T Consensus 170 ~g~~~-----~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~ 239 (299)
T 2z2n_A 170 SGDIT-----EFKIPTPASGPVGITKGNDDA-LWFVEI--IGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLW 239 (299)
T ss_dssp TCCEE-----EEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEE
T ss_pred CCcEE-----EeeCCCCCCcceeEEECCCCC-EEEEcc--CCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEE
Confidence 44321 111233445678999999755 555543 5789999999 776443 322 3568999999999866
Q ss_pred EEEecCCCCcEEEEeCCCceeeE-EEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 375 LSSHGFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
++ ...++.|.+||. +++... .+..+...+.++++ ++|.+.++.. .+.|..++..+
T Consensus 240 v~--~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 240 FT--EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EE--ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred Ee--ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 65 335788999998 443222 23345567999999 9998777655 56666676654
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.67 E-value=3e-15 Score=156.84 Aligned_cols=263 Identities=9% Similarity=-0.013 Sum_probs=175.8
Q ss_pred CEEEEEECCCCCeeeEEEec----CCCCCEEEEEEcCCCCEEEEEe-----cCCeEEEEeCCCceee-EEecCCCcccEE
Q 012679 161 STVYLWDASDGTTSELVTVD----DENGPVTSVNWAPDGRHIAIGL-----NNCQVQLWDSTANRQL-RTLRGGHRSRVG 230 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~----~h~~~V~~v~~s~~g~~la~g~-----~dg~v~iwd~~~~~~~-~~~~~~~~~~v~ 230 (458)
+.|++.+...++...+.... +|...+..++|||||++||.+. .+..|++||+.+++.+ .... ......
T Consensus 94 ~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~~~~~ 171 (695)
T 2bkl_A 94 AILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI--EGGKYA 171 (695)
T ss_dssp CEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB--SCCTTC
T ss_pred EEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc--Cccccc
Confidence 34666666666654444322 3555799999999999999543 3458999999998865 2111 111125
Q ss_pred EEEe--CCCeEEEEeCCCc-------------EEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEECCC---
Q 012679 231 SLAW--NNHILTTGGMDGL-------------IINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGNDN--- 289 (458)
Q Consensus 231 ~l~~--~~~~l~sg~~dg~-------------i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg--- 289 (458)
.++| +++.|+.++.+.. |++|++.++.. ++.....|...+.++.|+|||++|+.++.++
T Consensus 172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 251 (695)
T 2bkl_A 172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE 251 (695)
T ss_dssp CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE
T ss_pred ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc
Confidence 7888 5788998888776 99999987652 3333344566788999999999998887666
Q ss_pred -cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC-CCCCCeEEEEECCCCCe---eEEEeC--CCCe
Q 012679 290 -LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG-GGGDRCIKFWNTHTGAC---LNSVDT--GSQV 362 (458)
Q Consensus 290 -~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~-g~~d~~i~lwd~~~~~~---~~~~~~--~~~v 362 (458)
.|.+||...+. ...+..+...+....| +++. +++... +..++.|.+||+.++.. ...+.. ...+
T Consensus 252 ~~l~~~~~~~~~-------~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 252 NDVYWKRPGEKD-------FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp EEEEEECTTCSS-------CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred eEEEEEcCCCCc-------eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 67777654332 3444455556666667 5566 666543 12368999999988763 333333 3347
Q ss_pred EEEEEcCCCCeEEEEecCCCCcEEEEeCC-CceeeEEEeCC-CCcEEEEEEcCCCCEEEEEe----CCCcEEEEecCCCC
Q 012679 363 CALLWNKNERELLSSHGFTQNQLTLWKYP-SMVKMAELSGH-TSRVLFMAQSPDGCTVASAA----ADETLRFWNVFGAP 436 (458)
Q Consensus 363 ~~~~~s~~~~~l~~~~g~~d~~i~iwd~~-~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s----~Dg~i~iW~~~~~~ 436 (458)
..+.|+ ++..+++ ...++..+||.+. +++....+..+ .+.|..++++|++..|+... ..++|++||+.+++
T Consensus 323 ~~~~~~-~~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 323 LSVSIV-GGHLSLE--YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEE-TTEEEEE--EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEE-CCEEEEE--EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 778888 4444444 3367777777554 45556666655 66788899999998776332 34789999998765
Q ss_pred c
Q 012679 437 Q 437 (458)
Q Consensus 437 ~ 437 (458)
.
T Consensus 400 ~ 400 (695)
T 2bkl_A 400 S 400 (695)
T ss_dssp E
T ss_pred E
Confidence 3
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=7.1e-14 Score=132.55 Aligned_cols=261 Identities=9% Similarity=0.020 Sum_probs=180.3
Q ss_pred CCEEEEEECCCCCeeeEEEe--c--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-
Q 012679 160 GSTVYLWDASDGTTSELVTV--D--DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW- 234 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~--~--~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~- 234 (458)
++.|.+||.++++....... . ........+.+. +++..++...++.|.+||..+++.+.++. .......+++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~ 92 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFL 92 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEe
Confidence 58999999999876321100 0 122446778774 34455555567899999999999988886 4456777887
Q ss_pred CCCeEEEEe-CCCcEEEEEccCCCeeEEEEcccc-----cceEeEEEcCCCCEEEEEE--CCCcEEEEeCCCCCCCCcce
Q 012679 235 NNHILTTGG-MDGLIINNDVRVRDHIVETYRGHN-----QEVCGLKWSASGQQLASGG--NDNLLHIWDRSMASSNSVTQ 306 (458)
Q Consensus 235 ~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~h~-----~~v~~l~~spd~~~l~sg~--~dg~i~iwd~~~~~~~~~~~ 306 (458)
.+..++.+. .++.|.+||..+... ...+.... .....+++ ++..|.++. .++.|.++|..+.+.
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~----- 164 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV----- 164 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE-----
T ss_pred CCCeEEEEECCCCeEEEEECCCCeE-EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE-----
Confidence 333555555 899999999987653 33333222 15567777 445555554 489999999988754
Q ss_pred eeeeecccccceeEEEecCCCCcEEEEeCCCC--------CCeEEEEECCCCCeeEEEeC--CCCeEEEEEcCCCCeEEE
Q 012679 307 WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG--------DRCIKFWNTHTGACLNSVDT--GSQVCALLWNKNERELLS 376 (458)
Q Consensus 307 ~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~--------d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~ 376 (458)
+..+.. ......++++|++. +++++.+.. .+.|.++|..+++....+.. +.....++++|+++.+++
T Consensus 165 -~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 165 -VDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp -EEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred -EEEEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 344433 23456889999765 555544211 27899999999998877765 447899999999999988
Q ss_pred EecCCCCcEEEEeCCCceeeEE--EeCCCCcEEEEEEcC-CCCEEEEE----eCCCcEEEEecCCCCccc
Q 012679 377 SHGFTQNQLTLWKYPSMVKMAE--LSGHTSRVLFMAQSP-DGCTVASA----AADETLRFWNVFGAPQVI 439 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~~~--~~~h~~~V~~l~~sp-dg~~l~s~----s~Dg~i~iW~~~~~~~~~ 439 (458)
+. +.|.+||..+++.... +..+......++++| ++.+.++. ..++.|.+||.. ++.+.
T Consensus 242 ~~----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 242 IN----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp ES----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred Ec----cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 53 2899999988775321 222245688999999 56666666 578999999987 55443
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=3.7e-13 Score=136.39 Aligned_cols=287 Identities=14% Similarity=0.078 Sum_probs=200.1
Q ss_pred ceeeccC--CCeEEEEcCCEEEEEECC--CCCeeeEEEecCCCCCEEEEEEc----CCCCEEEEEec-CCeEEEEeCCCc
Q 012679 145 NLLDWGS--SNVLAIALGSTVYLWDAS--DGTTSELVTVDDENGPVTSVNWA----PDGRHIAIGLN-NCQVQLWDSTAN 215 (458)
Q Consensus 145 ~~~~~~~--~~~la~~~d~~v~iwd~~--~~~~~~~~~~~~h~~~V~~v~~s----~~g~~la~g~~-dg~v~iwd~~~~ 215 (458)
..+.+++ ..+++++.++.|.+||+. +++. +.++.. ......++|+ |||++++++.. ++.|.|+|..+.
T Consensus 200 ~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~--v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 200 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred cceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 3455555 457777788999999996 6655 455554 3347899999 69999888765 589999999999
Q ss_pred eeeEEecCC---------C-cccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE
Q 012679 216 RQLRTLRGG---------H-RSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL 282 (458)
Q Consensus 216 ~~~~~~~~~---------~-~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l 282 (458)
+.+..+... | ..++..+..+ +..++....+|.|.++|......+............++.|+|++++|
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence 988877631 1 1256777663 35666667789999999876543322222334456788999999998
Q ss_pred EEEE-CCCcEEEEeCCCCCCCCcceeeeeec-----ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-------
Q 012679 283 ASGG-NDNLLHIWDRSMASSNSVTQWLHRLE-----EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT------- 349 (458)
Q Consensus 283 ~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~------- 349 (458)
+++. .++.|.++|..+++. +..+. .|.+.-..+ ++|++..+++++. -.++.|.++|..+
T Consensus 357 ~va~~~sn~V~ViD~~t~kl------~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~ 428 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEGKL------VAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNA 428 (567)
T ss_dssp EEEEGGGTEEEEEETTTTEE------EEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTB
T ss_pred EEEeCCCCeEEEEECCCCcE------EEEEeccCcCCCCccceee-ECCCCCcEEEeCC-CCCCeEEEecCCCCCCcccc
Confidence 7766 578999999987754 22222 243222122 5787677777653 1468999999988
Q ss_pred CCeeEEEeCCC-CeEEEEEcCCCCeEEEEecCC-----CCcEEEEeCCCc-----eee-EEEe--------CCCCcEEEE
Q 012679 350 GACLNSVDTGS-QVCALLWNKNERELLSSHGFT-----QNQLTLWKYPSM-----VKM-AELS--------GHTSRVLFM 409 (458)
Q Consensus 350 ~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~g~~-----d~~i~iwd~~~~-----~~~-~~~~--------~h~~~V~~l 409 (458)
.+.++++...+ .-..+..+|+++++.+..... .+.|.++|..+. ... ..+. .-..++.++
T Consensus 429 ~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (567)
T 1qks_A 429 WKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQG 508 (567)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEE
T ss_pred CEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEee
Confidence 67888887653 335678899999999865211 359999999877 221 2231 124578999
Q ss_pred EEcCCCCEEEEEe-----CCCcEEEEecCCCCcccccC
Q 012679 410 AQSPDGCTVASAA-----ADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 410 ~~spdg~~l~s~s-----~Dg~i~iW~~~~~~~~~~~~ 442 (458)
.|+|+|+.+..+. .++.|.|+|..+.+......
T Consensus 509 ~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 509 EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 9999999877663 37999999998877654433
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.65 E-value=2e-13 Score=125.92 Aligned_cols=211 Identities=10% Similarity=-0.018 Sum_probs=162.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCceeeEEecCCCc-ccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEccc-ccc
Q 012679 194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR-SRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGH-NQE 269 (458)
Q Consensus 194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h-~~~ 269 (458)
.+++|++++.++.|++||.++++.+.++.. +. ..+.++.+ ++++|+ +.++.|..||. +++. +..+..+ ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC-CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCcc
Confidence 467899999999999999999999999986 43 46677777 577777 45778999998 5553 4555543 357
Q ss_pred eEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeec------ccccceeEEEecCCCCcEEEEeCCCCCCeE
Q 012679 270 VCGLKWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLE------EHTSAVKAIAWCPFQSNLLATGGGGGDRCI 342 (458)
Q Consensus 270 v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i 342 (458)
+.++.+.++|+++++.+. ++.|..+|. .++. +..+. .+......+++.+++. ++++.. .++.|
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~------l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~--~~~~v 148 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEV------LSKTEFETGIERPHAQFRQINKNKKGN-YLVPLF--ATSEV 148 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCE------EEEEEECCSCSSGGGSCSCCEECTTSC-EEEEET--TTTEE
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCE------EEEEeccCCCCcccccccCceECCCCC-EEEEec--CCCEE
Confidence 889999999999999887 778888875 3332 22221 2223455677888765 455554 78999
Q ss_pred EEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC------CcEEEEEEcCCCC
Q 012679 343 KFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT------SRVLFMAQSPDGC 416 (458)
Q Consensus 343 ~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~------~~V~~l~~spdg~ 416 (458)
..||.. |+.+.++.....+.++...++++.+++ +..++.|..+|..+++.+.++..+. ..+..++..++|.
T Consensus 149 ~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~--~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVA--CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EEECTT-SCEEEEEECSSCCCEEEECTTSCEEEE--CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred EEECCC-CCEEEEEECCCCccceeEcCCCCEEEE--eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence 999998 999999988777888889999999988 4467789999999999999986442 2378899999999
Q ss_pred EEEEEe
Q 012679 417 TVASAA 422 (458)
Q Consensus 417 ~l~s~s 422 (458)
++++..
T Consensus 226 i~v~~~ 231 (276)
T 3no2_A 226 LYICNW 231 (276)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 988774
No 187
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=5.5e-13 Score=126.40 Aligned_cols=216 Identities=12% Similarity=0.113 Sum_probs=156.3
Q ss_pred EEEEEECCCCCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-eeEEec--------CCCcccEEE
Q 012679 162 TVYLWDASDGTTSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-QLRTLR--------GGHRSRVGS 231 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-~~~~~~--------~~~~~~v~~ 231 (458)
.|++||..++++. ..+. ++-.....++++++|+++++...++.|++||..... .+..+. ..+......
T Consensus 70 ~i~~~d~~~g~~~--~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 70 TILVIDPNNAEIL--QSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CEEEECTTTCCEE--EEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred cEEEEECCCCeEE--eccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence 7999999988873 3332 344679999999999988888888999999976542 455553 124557889
Q ss_pred EEeC---CCeEEEEe-CCCcEEEEEccCCCeeEEEEcc----------cccceEeEEEcCC-CCEEEEEECCCcEEEEeC
Q 012679 232 LAWN---NHILTTGG-MDGLIINNDVRVRDHIVETYRG----------HNQEVCGLKWSAS-GQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 232 l~~~---~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~----------h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~ 296 (458)
++++ +.++++.+ .++.|.+||.. +. .+..+.. +-....+++++|+ +.++++...++.|++||.
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~ 225 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFSPS-GK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT 225 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEECTT-SC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEcCC-CC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC
Confidence 9995 45666665 68999999953 33 3444432 2234889999998 777777778899999998
Q ss_pred CCCCCCCcceeeeee--cccccceeEEEecCCCCcEEEEeC-----CCCCCeEEEEECCCCCeeEEEe----CCCCeEEE
Q 012679 297 SMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQSNLLATGG-----GGGDRCIKFWNTHTGACLNSVD----TGSQVCAL 365 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~ll~s~~-----g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~ 365 (458)
.+++. +..+ ..+...+.+++++| ..++++.+ ...+..|++||..+++.+..+. ....+..+
T Consensus 226 ~~G~~------~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i 297 (329)
T 3fvz_A 226 DTKEF------VREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI 297 (329)
T ss_dssp TTCCE------EEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEE
T ss_pred CCCcE------EEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE
Confidence 86554 4444 34566788999999 34444332 1245689999999999998874 23458999
Q ss_pred EEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 366 LWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
+++++|..+++ ...++.|++|++.
T Consensus 298 a~~~dG~lyva--d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 298 VASEDGTVYIG--DAHTNTVWKFTLT 321 (329)
T ss_dssp EECTTSEEEEE--ESSSCCEEEEEEE
T ss_pred EECCCCCEEEE--ECCCCEEEEEeCC
Confidence 99999955544 4468899999864
No 188
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.63 E-value=6.8e-13 Score=124.39 Aligned_cols=239 Identities=6% Similarity=0.042 Sum_probs=167.2
Q ss_pred CCCCEEEEEEcCCCCEEEE-------EecCCeEEEEeCCCceeeEEec---CCCcccEEEEEeCC--CeEEEEeCCCcEE
Q 012679 182 ENGPVTSVNWAPDGRHIAI-------GLNNCQVQLWDSTANRQLRTLR---GGHRSRVGSLAWNN--HILTTGGMDGLII 249 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~-------g~~dg~v~iwd~~~~~~~~~~~---~~~~~~v~~l~~~~--~~l~sg~~dg~i~ 249 (458)
.-....+++|+++|.++++ +..++.|.+||..+++...... .++...+.+++++. ..|..++..+.|.
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 3456789999999987777 5778899999988877543222 11446688899953 4555565555799
Q ss_pred EEEccCCCeeEEE-Ec----ccccceEeEEEcCCCCEEEEEECC---------------CcEEEEeCCCCCCCCcceeee
Q 012679 250 NNDVRVRDHIVET-YR----GHNQEVCGLKWSASGQQLASGGND---------------NLLHIWDRSMASSNSVTQWLH 309 (458)
Q Consensus 250 vwd~~~~~~~~~~-~~----~h~~~v~~l~~spd~~~l~sg~~d---------------g~i~iwd~~~~~~~~~~~~~~ 309 (458)
+||.. +.. ... .. .....+.+++++++|+++++...+ +.|..||.. +. ..
T Consensus 96 ~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-------~~ 165 (314)
T 1pjx_A 96 VVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-------MI 165 (314)
T ss_dssp EEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-------EE
T ss_pred EEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-------EE
Confidence 99987 442 221 11 112358899999999988777654 567777754 22 22
Q ss_pred eecccccceeEEEec----CCCCcEEEEeCCCCCCeEEEEECC-CCCe-----eEEEeCC--CCeEEEEEcCCCCeEEEE
Q 012679 310 RLEEHTSAVKAIAWC----PFQSNLLATGGGGGDRCIKFWNTH-TGAC-----LNSVDTG--SQVCALLWNKNERELLSS 377 (458)
Q Consensus 310 ~~~~h~~~v~~l~~~----p~~~~ll~s~~g~~d~~i~lwd~~-~~~~-----~~~~~~~--~~v~~~~~s~~~~~l~~~ 377 (458)
.+..+......++|+ |++..++++.. .++.|.+||.. +++. ...+... ..+..++++++|+.+++.
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence 222333456789999 98777777765 67899999986 4442 2222222 457889999999877774
Q ss_pred ecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEecCC
Q 012679 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNVFG 434 (458)
Q Consensus 378 ~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~i~iW~~~~ 434 (458)
. .++.|.+||..+++.+..+..+...+.+++++|+|+.| ++...++.|..|++..
T Consensus 244 ~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 244 W--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp E--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred c--CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 3 57899999998788777777777889999999999955 4555678899999864
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.62 E-value=9.8e-14 Score=131.53 Aligned_cols=236 Identities=8% Similarity=0.068 Sum_probs=168.6
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
..|.++.|++++..++....++.++.| .++....+.. +...+.+++|+ +.+++++..++.|.+||..++.. ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISK-KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KR 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEES-SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEec-cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EE
Confidence 457788899988877777788889999 3455666665 66677899994 67777888899999999987653 22
Q ss_pred EEcccccceEeEEEcCCCCEEEEEECC----CcEEEEeCCCCCCCCcceeeeee--cccccceeEEEecCCCCcEEEEeC
Q 012679 262 TYRGHNQEVCGLKWSASGQQLASGGND----NLLHIWDRSMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 262 ~~~~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
....+...+.+++++++|+++++...+ +.|.+||...... ...+ ..+...+..++++|++. ++++..
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~ 153 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL------QDIIEDLSTAYCIDDMVFDSKGG-FYFTDF 153 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC------EEEECSSSSCCCEEEEEECTTSC-EEEEEC
T ss_pred EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE------EEEEccCccCCcccceEECCCCC-EEEEec
Confidence 233456789999999999988877766 6899999877654 1111 12445788999999765 554442
Q ss_pred C----CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ceeeE--------EEeCC
Q 012679 336 G----GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MVKMA--------ELSGH 402 (458)
Q Consensus 336 g----~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~--------~~~~h 402 (458)
+ ...+.|..+|..+++..........+..++|+|+++.++++. ..++.|.+|++.+ +..+. .+.++
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 232 (333)
T 2dg1_A 154 RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE-TTANRLHRIALEDDGVTIQPFGATIPYYFTGH 232 (333)
T ss_dssp CCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE-GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred cccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe-CCCCeEEEEEecCCCcCcccccceEEEecCCC
Confidence 1 013567777776666544434345678999999999776653 3568999999863 32221 12222
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 403 TSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
..+..++++++|+++++...++.|.+|+..
T Consensus 233 -~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 233 -EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp -SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred -CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 467889999999988888888999999984
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=2.1e-11 Score=113.16 Aligned_cols=271 Identities=11% Similarity=-0.055 Sum_probs=181.7
Q ss_pred ccceeeccC-CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGS-SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
....+..++ ++++.+. .++.|.+||.. ++... ..+..+...+.++++.++|++.++...++.|..||.. ++....
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 344556655 5566665 46899999988 66543 3344445679999999999877776667899999987 554322
Q ss_pred ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
........+.+++++ +.++++...++.|..+|.. +......+......+.++++.++++++++...++.|..||. .
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 211134678888885 5666666668899999987 44322223334567899999999997776666789999997 3
Q ss_pred CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE-e-CCCCeEEEEEcCCCCeEEE
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV-D-TGSQVCALLWNKNERELLS 376 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~ 376 (458)
+... ......+...+..+++.+++ .++++.. ..+.|.+||. +++..... . ....+.+++++++++..++
T Consensus 176 g~~~-----~~~~~~~~~~~~~i~~d~~g-~l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 176 GKLE-----EYPLPTNAAAPVGITSGNDG-ALWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp CCEE-----EEECSSTTCCEEEEEECTTS-SEEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred CcEE-----EeeCCCCCCCcceEEECCCC-CEEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence 3320 11222344568899999975 5666544 5678999998 55544432 2 2456889999999986665
Q ss_pred EecCCCCcEEEEeCCCceee-EEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 377 SHGFTQNQLTLWKYPSMVKM-AELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~-~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
. ..++.|..|+. +++.. ..+......+.+++++++|.+.++.. . .|..++.
T Consensus 247 ~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 247 E--WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp E--TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred c--cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 3 35789999998 44332 22333446688999999998766554 4 5655554
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.61 E-value=6.5e-13 Score=122.52 Aligned_cols=208 Identities=10% Similarity=0.044 Sum_probs=153.9
Q ss_pred CeEEEEcCCEEEEEECCCCCeeeEEEecCCC-CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679 153 NVLAIALGSTVYLWDASDGTTSELVTVDDEN-GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~-~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 231 (458)
.+++++.++.|++||.++|+. +.++..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+..+....+.+
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEI--VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEE--EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred EEEeeCCCCEEEEEECCCCeE--EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 355556789999999999988 66666554 4689999999999888 45778999998 899999988633456777
Q ss_pred EEe--CCCeEEEEeC-CCcEEEEEccCCCeeEEEEc------ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC
Q 012679 232 LAW--NNHILTTGGM-DGLIINNDVRVRDHIVETYR------GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN 302 (458)
Q Consensus 232 l~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~------~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~ 302 (458)
+.+ +++++++.+. ++.|..+|.. ++. +..+. .+......+.+.++|+++++...++.|..||.. ++.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~- 157 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL- 157 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred cEECCCCCEEEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE-
Confidence 777 6888888877 7778777763 332 33332 222345567889999999999999999999987 654
Q ss_pred CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-------CCeEEEEEcCCCCeEE
Q 012679 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-------SQVCALLWNKNERELL 375 (458)
Q Consensus 303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~ 375 (458)
+.++..+ ..+.++...+++. +++++. .++.|..+|..+|+.+..+... ..+..+...+++..++
T Consensus 158 -----~w~~~~~-~~~~~~~~~~~g~-~~v~~~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 158 -----LNSVKLS-GTPFSSAFLDNGD-CLVACG--DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp -----EEEEECS-SCCCEEEECTTSC-EEEECB--TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred -----EEEEECC-CCccceeEcCCCC-EEEEeC--CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 4455433 3456677888655 444443 5678999999999999988632 1267888888888887
Q ss_pred EEe
Q 012679 376 SSH 378 (458)
Q Consensus 376 ~~~ 378 (458)
+..
T Consensus 229 ~~~ 231 (276)
T 3no2_A 229 CNW 231 (276)
T ss_dssp EEE
T ss_pred Eec
Confidence 753
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.60 E-value=9.4e-12 Score=119.85 Aligned_cols=263 Identities=12% Similarity=-0.018 Sum_probs=176.4
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCC------
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGH------ 225 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~------ 225 (458)
.|.+||..+++. +.++.....+ .++++|||++|+++. .++.|.+||..+.+.+..+..+.
T Consensus 48 ~v~v~D~~t~~~--~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGSGSI--LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCCCeE--EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 899999999886 4555543343 999999999999886 36789999999988888775420
Q ss_pred cccEEEEEe--CCCeEEEEeC--CCcEEEEEccCCCeeEEE-EcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCC
Q 012679 226 RSRVGSLAW--NNHILTTGGM--DGLIINNDVRVRDHIVET-YRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 226 ~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~~~~~~~~~~-~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~ 299 (458)
......+.| ++++|+++.. ++.|.++| .+++. +.. +.. .. ++.+.|++ +.+++.+.||.+.++|. .+
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence 112335566 6788888774 57899999 77654 444 322 11 24445554 45667778999999998 55
Q ss_pred CCCCcceeeeeecccccc-eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC--eeEEEeC-----------CCCeEEE
Q 012679 300 SSNSVTQWLHRLEEHTSA-VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA--CLNSVDT-----------GSQVCAL 365 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~--~~~~~~~-----------~~~v~~~ 365 (458)
...........+ ....+ .....+.+++..++++. ..+.+.+.|+.++. .+..+.. ......+
T Consensus 197 ~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 197 GAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred cEEEEEeccccc-cCCcceeecceeEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence 431000000001 11111 12345666666655554 56789999987653 2233321 1223447
Q ss_pred EEcCCCCeEEEEecC--------CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCC
Q 012679 366 LWNKNERELLSSHGF--------TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAA-ADETLRFWNVFGA 435 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~--------~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~i~iW~~~~~ 435 (458)
.++++++.++++... ..+.|.++|..+++.+.++.. .....+++|+|||+ .++++. .++.|.+||+.+.
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 889999988886421 246899999999999998863 33578999999999 777777 5899999999988
Q ss_pred Ccccc
Q 012679 436 PQVIS 440 (458)
Q Consensus 436 ~~~~~ 440 (458)
+.+..
T Consensus 352 ~vv~~ 356 (373)
T 2mad_H 352 DQDQS 356 (373)
T ss_pred CEEee
Confidence 87755
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.60 E-value=3.6e-13 Score=127.63 Aligned_cols=247 Identities=6% Similarity=-0.043 Sum_probs=172.6
Q ss_pred eeeccCCCeEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEecC
Q 012679 146 LLDWGSSNVLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLRG 223 (458)
Q Consensus 146 ~~~~~~~~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~ 223 (458)
.+.+..+.++++.. ++.|.+||..+++. +.++.. ......+++++++ .+.++. .++.|.+||..+++....+..
T Consensus 48 ~i~~~~~~lyv~~~~~~~v~viD~~t~~~--~~~i~~-~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 48 SMVIRDGIGWIVVNNSHVIFAIDINTFKE--VGRITG-FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp EEEEETTEEEEEEGGGTEEEEEETTTCCE--EEEEEC-CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCEEEEEEcCCCEEEEEECcccEE--EEEcCC-CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 34445566666665 68999999999987 444443 4678999999998 455555 789999999999998877764
Q ss_pred CCc----ccEEEEEeCCCeEEEEe--CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC---------
Q 012679 224 GHR----SRVGSLAWNNHILTTGG--MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND--------- 288 (458)
Q Consensus 224 ~~~----~~v~~l~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d--------- 288 (458)
+.. .....+++++..|+++. .++.|.++|+.+... +..+.. ......+.++|+|++++++..+
T Consensus 124 g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~-~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKV-VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp TTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEE-EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred CCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeE-EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccC
Confidence 221 14455666666666665 488999999987654 344433 2345789999999977776654
Q ss_pred -CcEEEEeCCCCCCCCcceeeeeeccc-ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE--EeC-CCCeE
Q 012679 289 -NLLHIWDRSMASSNSVTQWLHRLEEH-TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS--VDT-GSQVC 363 (458)
Q Consensus 289 -g~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~--~~~-~~~v~ 363 (458)
+.|.++|..+.+. ...+... ......++++|++..++++. +.|.+||..+++.... +.. .....
T Consensus 202 ~~~v~~id~~t~~v------~~~~~~~~g~~p~~la~~~d~~~lyv~~-----~~v~~~d~~t~~~~~~~~~~~~~~~p~ 270 (328)
T 3dsm_A 202 APSLYRIDAETFTV------EKQFKFKLGDWPSEVQLNGTRDTLYWIN-----NDIWRMPVEADRVPVRPFLEFRDTKYY 270 (328)
T ss_dssp CCEEEEEETTTTEE------EEEEECCTTCCCEEEEECTTSCEEEEES-----SSEEEEETTCSSCCSSCSBCCCSSCEE
T ss_pred CceEEEEECCCCeE------EEEEecCCCCCceeEEEecCCCEEEEEc-----cEEEEEECCCCceeeeeeecCCCCceE
Confidence 7899999887654 3333321 23678999999888777753 2899999998876421 222 35688
Q ss_pred EEEEcCCCCeEEEEec---CCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679 364 ALLWNKNERELLSSHG---FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ 411 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g---~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 411 (458)
.++++|++..++++.. ..++.|.+||.. ++.+.++..- .....++|
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 9999997666666531 357899999998 8888877532 22345554
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=9e-13 Score=138.32 Aligned_cols=255 Identities=11% Similarity=0.035 Sum_probs=172.3
Q ss_pred CceeeeCCCCCCc--cccceeeccCC-CeEE-EEcC-C----EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEE
Q 012679 129 SERTLDAPDLVDD--YYLNLLDWGSS-NVLA-IALG-S----TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA 199 (458)
Q Consensus 129 ~~~~l~~~~~~~d--~~~~~~~~~~~-~~la-~~~d-~----~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la 199 (458)
++.+++...+..+ +.+..+.|+++ ..++ +..+ | .|++||+.+++.... .+.. ..+..++|+|||+.|+
T Consensus 110 ~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~~~--~~~~~~~wspDg~~l~ 186 (710)
T 2xdw_A 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLER--VKFSCMAWTHDGKGMF 186 (710)
T ss_dssp CEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEEE--ECSCCEEECTTSSEEE
T ss_pred cEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cccC--cccceEEEEeCCCEEE
Confidence 4455555444433 35778899984 4444 3332 2 899999999987443 2222 2267899999999999
Q ss_pred EEecCCe----------------EEEEeCCCceee--EEecC-CCcccEEEEEe--CCCeEEEEeC-----CCcEEEEEc
Q 012679 200 IGLNNCQ----------------VQLWDSTANRQL--RTLRG-GHRSRVGSLAW--NNHILTTGGM-----DGLIINNDV 253 (458)
Q Consensus 200 ~g~~dg~----------------v~iwd~~~~~~~--~~~~~-~~~~~v~~l~~--~~~~l~sg~~-----dg~i~vwd~ 253 (458)
.++.++. |++|++.++... ..+.. .|...+..+.| ++++|+.++. +..|++||+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~ 266 (710)
T 2xdw_A 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL 266 (710)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEG
T ss_pred EEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEEC
Confidence 9988766 999999887632 22222 14556778888 5777777654 568999999
Q ss_pred cC------CCeeEEEEcccccceEeEEEcCCCCEEEEEECCC----cEEEEeCCCCCCCCcceeeeeeccccc--ceeEE
Q 012679 254 RV------RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN----LLHIWDRSMASSNSVTQWLHRLEEHTS--AVKAI 321 (458)
Q Consensus 254 ~~------~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l 321 (458)
.+ +......+..+...+.. .|+++|+.|+..++++ .|.+||+..+... . ...+..|.. .+..+
T Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~-~~~l~~~~~~~~~~~~ 341 (710)
T 2xdw_A 267 QQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---K-WKVLVPEHEKDVLEWV 341 (710)
T ss_dssp GGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---G-CEEEECCCSSCEEEEE
T ss_pred cccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---c-ceeccCCCCCCeEEEE
Confidence 86 43224555556555554 4889999888777643 5999998776321 0 233444433 67889
Q ss_pred EecCCCCcEEEEeCCCCCC--eEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEe--cCCCCcEEEEeCCCce
Q 012679 322 AWCPFQSNLLATGGGGGDR--CIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSH--GFTQNQLTLWKYPSMV 394 (458)
Q Consensus 322 ~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~--g~~d~~i~iwd~~~~~ 394 (458)
+|++ +..++++.. .|+ .|.+||+.+|+.+..+..+ ..+..+.++|++..++.+. ....+.|.+||+.+++
T Consensus 342 ~~~~-~~~lv~~~~--~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 342 ACVR-SNFLVLCYL--HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEET-TTEEEEEEE--ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEc-CCEEEEEEE--ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 9986 466777665 666 4677788788877777553 4577889999998776542 3346789999998876
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=1.5e-11 Score=114.09 Aligned_cols=240 Identities=9% Similarity=-0.032 Sum_probs=168.8
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCC
Q 012679 179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVR 256 (458)
Q Consensus 179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~ 256 (458)
+..+...+.++++.++|++.++...++.|.+||.. ++........+...+.+++++ +.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44455679999999999977766667899999988 554332212245678899984 5666666668899999986 3
Q ss_pred CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679 257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG 336 (458)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g 336 (458)
......+......+.++++.++++++++...++.|.+||. .+... ......+...+..+++.+++ .++++..
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-----~~~~~~~~~~~~~i~~~~~g-~l~v~~~- 159 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-----EYELPNKGSYPSFITLGSDN-ALWFTEN- 159 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-----EEECSSTTCCEEEEEECTTS-CEEEEET-
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-----EecCCCCCCCCceEEEcCCC-CEEEEeC-
Confidence 3211222234567899999999998888777889999997 33320 11222344568899999976 5666554
Q ss_pred CCCCeEEEEECCCCCeeEE-Ee-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE-EEeCCCCcEEEEEEcC
Q 012679 337 GGDRCIKFWNTHTGACLNS-VD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFMAQSP 413 (458)
Q Consensus 337 ~~d~~i~lwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l~~sp 413 (458)
.++.|..||. +++.... .. ....+..+++++++..+++ ...++.|.+|+. +++... .+..+...+.++++++
T Consensus 160 -~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 160 -QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV--EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA 234 (299)
T ss_dssp -TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred -CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE--ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC
Confidence 5789999999 7765543 22 2346889999999886665 335788999998 655432 2333456789999999
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 012679 414 DGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 414 dg~~l~s~s~Dg~i~iW~~~ 433 (458)
+|+++++...++.|..|+..
T Consensus 235 ~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TTCEEEEETTTTEEEEEETT
T ss_pred CCCEEEeccCCceEEEECCC
Confidence 99977766678899999983
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=1.3e-12 Score=119.79 Aligned_cols=237 Identities=10% Similarity=-0.037 Sum_probs=158.1
Q ss_pred ccceeeccC-CCeEE-E-EcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 143 YLNLLDWGS-SNVLA-I-ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 143 ~~~~~~~~~-~~~la-~-~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
....+.+++ +++++ + ..++.|++||..++... .....+...+.+++++++|+++++.. ++.|.+||...... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-T 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E--ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc--eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-e
Confidence 455666765 45555 4 45789999997665432 11122335688999999999555554 88999999876543 3
Q ss_pred EecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 220 TLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
.+.......+..++++ +.++++...++.|.+|+..+.... .........+.+++++++|+++++...++.|.+||..
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 3332234568889885 566777677889999976544321 1122333467899999999977777778899999987
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLS 376 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~ 376 (458)
.... ......+...+..+++++++ .++++.. .++.|.+||............ ...+.+++++++++.+++
T Consensus 180 ~~~~------~~~~~~~~~~p~~i~~d~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 180 SNNQ------VVLPFTDITAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp TCCE------EECCCSSCCSEEEEEECTTC-CEEEEET--TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEE
T ss_pred CCce------EeecccCCCCceEEEECCCC-CEEEEEC--CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEE
Confidence 6543 22222233567899999976 6777654 678999999876554332222 256899999999985555
Q ss_pred EecCCCCcEEEEeCCCcee
Q 012679 377 SHGFTQNQLTLWKYPSMVK 395 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~ 395 (458)
...++.|.++++...+.
T Consensus 251 --~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 251 --DRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp --EGGGTEEEEECCCGGGS
T ss_pred --ECCCCEEEEEcCCCccc
Confidence 34688999999876543
No 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=4.9e-13 Score=127.30 Aligned_cols=228 Identities=11% Similarity=0.131 Sum_probs=148.6
Q ss_pred cceeeccCC--CeEEEEcC---C--EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC------------
Q 012679 144 LNLLDWGSS--NVLAIALG---S--TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN------------ 204 (458)
Q Consensus 144 ~~~~~~~~~--~~la~~~d---~--~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d------------ 204 (458)
+..+.|+++ .++.++.+ + .|++|++.+++...+... .. +..++|+|||+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA---KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE---SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC---CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 456788873 35555543 2 489999998876554443 23 9999999999999988743
Q ss_pred ---------------CeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCC-------cEEEEEccCCCeeE
Q 012679 205 ---------------CQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDG-------LIINNDVRVRDHIV 260 (458)
Q Consensus 205 ---------------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg-------~i~vwd~~~~~~~~ 260 (458)
..|.+||+.+++.+..+.. . .+..+.|+ + +++++..++ ...+|.+. ... .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~ 210 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-E 210 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-E
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc-e
Confidence 5799999998887455553 2 67788884 5 666665542 34455444 333 2
Q ss_pred EEEcccccceEeEEEcCCCCEEEEEECC--------CcEEEEeCCCCCCCCcceeeeeecccccceeE-EEecCCCCcEE
Q 012679 261 ETYRGHNQEVCGLKWSASGQQLASGGND--------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA-IAWCPFQSNLL 331 (458)
Q Consensus 261 ~~~~~h~~~v~~l~~spd~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~~~~ll 331 (458)
..+..+ ..+..+ +|||++|+.++.+ ..|.+|| .+.. ......+...+.. +.|+ ++ ++
T Consensus 211 ~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~------~~l~~~~~~~~~~~~~~s-dg--~~ 276 (347)
T 2gop_A 211 EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV------MGILDEVDRGVGQAKIKD-GK--VY 276 (347)
T ss_dssp EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE------EESSTTCCSEEEEEEEET-TE--EE
T ss_pred EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce------EeccccCCcccCCccEEc-Cc--EE
Confidence 333334 445444 9999999888754 3688888 3322 2333455677886 8999 65 66
Q ss_pred EEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCc-EEEEeCCCceeeEEEeCCCC
Q 012679 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ-LTLWKYPSMVKMAELSGHTS 404 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~-i~iwd~~~~~~~~~~~~h~~ 404 (458)
++++ .++.+++| +.+++..........+.++.|++ ..+++.. .++. ..||.+. ++ ...+..|..
T Consensus 277 ~~~~--~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~--~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 277 FTLF--EEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKE--TATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEEE--ETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEE--CSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EEEe--cCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEc--CCCChHHheEeC-Cc-EEEeccccH
Confidence 6665 78899999 87777655555566789999999 4444432 3333 2566555 43 444555554
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=4.1e-13 Score=141.61 Aligned_cols=265 Identities=12% Similarity=0.052 Sum_probs=166.1
Q ss_pred EEEEEECC---CCCeeeEEEe----cCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEeCCCceeeEEecCCCcccE
Q 012679 162 TVYLWDAS---DGTTSELVTV----DDENGPVTSVNWAPDGRHIAIGLNN-----CQVQLWDSTANRQLRTLRGGHRSRV 229 (458)
Q Consensus 162 ~v~iwd~~---~~~~~~~~~~----~~h~~~V~~v~~s~~g~~la~g~~d-----g~v~iwd~~~~~~~~~~~~~~~~~v 229 (458)
.|++.+.. .++...+... .+|...+..++|||||++||.+..+ ..|++||+.+++.+.... +...+
T Consensus 134 ~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~ 211 (741)
T 1yr2_A 134 QLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKF 211 (741)
T ss_dssp EEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEES
T ss_pred EEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCcee
Confidence 44555554 4444333321 1233468899999999999988654 369999999998765422 22233
Q ss_pred EEEEeCC-CeEEEEeCCCc--------------EEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEECCC--
Q 012679 230 GSLAWNN-HILTTGGMDGL--------------IINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGNDN-- 289 (458)
Q Consensus 230 ~~l~~~~-~~l~sg~~dg~--------------i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-- 289 (458)
..++|.+ +.|+.++.++. |++|++.++.. ++.....+...+.++.|+|||++|+..+.++
T Consensus 212 ~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 291 (741)
T 1yr2_A 212 SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD 291 (741)
T ss_dssp CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC
T ss_pred ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC
Confidence 5788843 67777776554 88999876652 2222223344588999999999998877544
Q ss_pred ---cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC-CCCCCeEEEEECCCC--CeeEEEeCC-CCe
Q 012679 290 ---LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG-GGGDRCIKFWNTHTG--ACLNSVDTG-SQV 362 (458)
Q Consensus 290 ---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~-g~~d~~i~lwd~~~~--~~~~~~~~~-~~v 362 (458)
.|++||+.++... ....+..+...+.... +|++..+++... +..++.|.+||+.++ .....+... ..+
T Consensus 292 ~~~~l~~~d~~~~~~~----~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l 366 (741)
T 1yr2_A 292 PVNTVHVARVTNGKIG----PVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNL 366 (741)
T ss_dssp SCCEEEEEEEETTEEC----CCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEE
T ss_pred CcceEEEEECCCCCCc----ccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeE
Confidence 8999998765110 0123334444444443 477887777653 123567999999885 333333333 235
Q ss_pred EEEEEcCCCCeEEEEecCCCCcEEEEeCC-CceeeEEEeC-CCCcEEEEEEcCCCCEEEEE-e---CCCcEEEEecCCCC
Q 012679 363 CALLWNKNERELLSSHGFTQNQLTLWKYP-SMVKMAELSG-HTSRVLFMAQSPDGCTVASA-A---ADETLRFWNVFGAP 436 (458)
Q Consensus 363 ~~~~~s~~~~~l~~~~g~~d~~i~iwd~~-~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~-s---~Dg~i~iW~~~~~~ 436 (458)
..+.|+ ++..+++ ...++..+||.+. ++.....+.. +.+.|..++++|++..|+.. + ..++|++||+.+++
T Consensus 367 ~~~~~~-~~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 367 ESVGIA-GNRLFAS--YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEE-BTEEEEE--EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEE-CCEEEEE--EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 567776 3344444 3357766666543 4555666654 35678899999998766532 2 34789999997765
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=2.1e-12 Score=123.65 Aligned_cols=277 Identities=14% Similarity=0.086 Sum_probs=177.3
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCCC---------eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGT---------TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~---------~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~ 212 (458)
.++++++++ ..+++++....+.+|++++.. ........ +.. |+.++| |+++|+++ .+|.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 588899987 567777777788889865432 22222333 455 999999 99999999 8899999999
Q ss_pred CCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 213 TANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
.+......... |...+.++.+.+..+++++.||.|.+||+..+.. .. +...|++++|||+| ++.|..||.++
T Consensus 114 ~sl~~~~~~~~-~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTS-FEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEE-CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccce-eecceeeEEecCCCEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 87776555555 7778999888655599999999999999987664 22 45689999999999 78899999999
Q ss_pred EEeCCCCCCCCcceeeeee------c---ccccceeEEEecCCCCcEEEEeCCC---C-----CCeEEEEECCCCCee-E
Q 012679 293 IWDRSMASSNSVTQWLHRL------E---EHTSAVKAIAWCPFQSNLLATGGGG---G-----DRCIKFWNTHTGACL-N 354 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~------~---~h~~~v~~l~~~p~~~~ll~s~~g~---~-----d~~i~lwd~~~~~~~-~ 354 (458)
+|+........ ...+ . +|...|.+|.|.+++..+++-+... . +..+++.+...+... .
T Consensus 186 ~~~~~~~~~~~----k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~~f~ 261 (388)
T 1xip_A 186 SFAWRNGEMEK----QFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQ 261 (388)
T ss_dssp EEEEETTEEEE----EEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEEEEE
T ss_pred EEcCCCccccc----cceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCceeE
Confidence 99876654200 1122 2 3778999999999766655543211 1 225666663222211 1
Q ss_pred EE-e----CCC-----C---eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE----------Ee---CCCCcEEE
Q 012679 355 SV-D----TGS-----Q---VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE----------LS---GHTSRVLF 408 (458)
Q Consensus 355 ~~-~----~~~-----~---v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~----------~~---~h~~~V~~ 408 (458)
.+ + .+. . ..--.|.|+.+.++.++....-.|-+++-. +.+.. +. +-.....+
T Consensus 262 ~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~--~~~~~~~Ds~Ra~lPl~~~~~~Dt~piG 339 (388)
T 1xip_A 262 ETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK--QVIEPSQDSERAVLPISEETDKDTNPIG 339 (388)
T ss_dssp EESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS--SEEEESSGGGCCBCCBCTTTCCBCCEEE
T ss_pred ccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc--cEEeecCccccceeccCCCCCCCCcceE
Confidence 12 1 011 1 122357777777766555455556666532 11111 11 11122444
Q ss_pred EEEcC--C---------------CCEEEEEeCCCcEEEEecCCCCcc
Q 012679 409 MAQSP--D---------------GCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 409 l~~sp--d---------------g~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
+++.- . -..|..-+.||.+..|.+....-+
T Consensus 340 ~alD~ss~~~v~~p~~g~e~~~plP~l~~L~~~G~L~~~~~~~~~~i 386 (388)
T 1xip_A 340 VAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFHVAAI 386 (388)
T ss_dssp EEEECSCCC--------------CCEEEEEETTSEEEEEEEEC----
T ss_pred EEEEcccCceecCCCCCcccCCCCCEEEEEcCCceEEEEEEEchhhh
Confidence 44421 1 124677789999999998765543
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=7.6e-12 Score=119.40 Aligned_cols=269 Identities=11% Similarity=0.047 Sum_probs=178.3
Q ss_pred CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCC----
Q 012679 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGH---- 225 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~---- 225 (458)
++.|.++|..+++. +.++.....+ . ++++|||++|+++. .++.|.+||..+++.+.++..+.
T Consensus 58 ~~~V~ViD~~t~~v--~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 58 VTQQFVIDGEAGRV--IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 133 (386)
T ss_dssp SEEEEEEETTTTEE--EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CCEEEEEECCCCeE--EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence 47999999999887 4444433444 4 99999999988875 35789999999999988876321
Q ss_pred --cccEEEEEe--CCCeEEEEeC--CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC-
Q 012679 226 --RSRVGSLAW--NNHILTTGGM--DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM- 298 (458)
Q Consensus 226 --~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~- 298 (458)
......+.+ ++++++++.. ++.|.++|+.+.+. +..+.-. + +...+....+.+++.+.||.+.+.++..
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~ 209 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D--CYHIFPTAPDTFFMHCRDGSLAKVAFGTE 209 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECC-S--EEEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C--cceeecCCCceeEEECCCCCEEEEECCCC
Confidence 112334555 6888887764 68999999998764 4444321 1 1233433556777888899999998876
Q ss_pred CCCCCcceeeeeecccccce-eEEEec-CCCCcEEEEeCCCCCCeEEEEECCCCC--eeEEEeC-----------CCCeE
Q 012679 299 ASSNSVTQWLHRLEEHTSAV-KAIAWC-PFQSNLLATGGGGGDRCIKFWNTHTGA--CLNSVDT-----------GSQVC 363 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v-~~l~~~-p~~~~ll~s~~g~~d~~i~lwd~~~~~--~~~~~~~-----------~~~v~ 363 (458)
+... . .....+......+ ...+|. +++..++++ .++.|++.|+.++. .+..+.. .....
T Consensus 210 g~v~-~-~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs----~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q 283 (386)
T 3sjl_D 210 GTPE-I-THTEVFHPEDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 283 (386)
T ss_dssp SCCE-E-EECCCCSCTTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred CeEE-E-eecceeccccccccccceeEcCCCcEEEEe----CCCEEEEEECCCCcceeecceeccccccccccccCCCcc
Confidence 3321 0 0000111111222 124554 554344433 57899999997764 3333320 12334
Q ss_pred EEEEcCCCCeEEEEecC--------CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEE-eCCCcEEEEecC
Q 012679 364 ALLWNKNERELLSSHGF--------TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASA-AADETLRFWNVF 433 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~--------~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~-s~Dg~i~iW~~~ 433 (458)
.+.++++++.++++... ..+.|.++|..+++.+..+.- ...+..|++++|++ .|+++ ..++.|.++|..
T Consensus 284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 57779999999986531 135799999999999988863 23688999999997 66664 458999999999
Q ss_pred CCCcccccCC
Q 012679 434 GAPQVISKSA 443 (458)
Q Consensus 434 ~~~~~~~~~~ 443 (458)
+.+.+.+...
T Consensus 363 t~k~~~~i~~ 372 (386)
T 3sjl_D 363 SGEELRSVNQ 372 (386)
T ss_dssp TCCEEEEECC
T ss_pred CCcEEEEecC
Confidence 8887766543
No 201
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=6.7e-12 Score=116.82 Aligned_cols=234 Identities=10% Similarity=0.024 Sum_probs=158.2
Q ss_pred cceeeccC-CC-eE-EEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 144 LNLLDWGS-SN-VL-AIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 144 ~~~~~~~~-~~-~l-a~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
...+.|++ ++ ++ +...++.|+.||..++ . ..+..+...+.+++++++|+++++...++.|.+||..+++....
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E---EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e---EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 45677876 44 44 4456789999999887 3 23334567799999999999877776778999999988775443
Q ss_pred ecC---CCcccEEEEEeC--CCeEEE----Ee-------------CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679 221 LRG---GHRSRVGSLAWN--NHILTT----GG-------------MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS 278 (458)
Q Consensus 221 ~~~---~~~~~v~~l~~~--~~~l~s----g~-------------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd 278 (458)
... .....+..++++ +.++++ |+ ..+.|..++.. .. ...+..+.....+++|+|+
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSAPIRDRVKPNGLAFLPS 182 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEEEECCCSSEEEEEECTT
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CC-EEEeecCCCCCccEEECCC
Confidence 321 112345667774 677776 33 13456666654 22 3444556677889999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679 279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358 (458)
Q Consensus 279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~ 358 (458)
++.|++.+.++.|.+||+....... .....+..+...+..+++++++. ++++. ++.|.+||.. ++.+..+..
T Consensus 183 g~~lv~~~~~~~i~~~~~~~~g~~~--~~~~~~~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 183 GNLLVSDTGDNATHRYCLNARGETE--YQGVHFTVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp SCEEEEETTTTEEEEEEECSSSCEE--EEEEEECCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTT-SCEEEEEEC
T ss_pred CCEEEEeCCCCeEEEEEECCCCcCc--CCCeEeeCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCC-CCEEEEEEC
Confidence 9999777778999999987321100 00112233556678899999875 55443 5789999986 788887776
Q ss_pred CCCeEEEEE-cCCCCeEEEEecCCCCcEEEEeCCCcee
Q 012679 359 GSQVCALLW-NKNERELLSSHGFTQNQLTLWKYPSMVK 395 (458)
Q Consensus 359 ~~~v~~~~~-s~~~~~l~~~~g~~d~~i~iwd~~~~~~ 395 (458)
+..+.+++| .++++.|++++ .+.+.-++..+.+.
T Consensus 255 ~~~~~~~~f~~~d~~~L~v~t---~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 255 PQTTSNLCFGGPEGRTLYMTV---STEFWSIETNVRGL 289 (296)
T ss_dssp SSCCCEEEEESTTSCEEEEEE---TTEEEEEECSCCBC
T ss_pred CCCceeEEEECCCCCEEEEEc---CCeEEEEEcccccc
Confidence 555899999 58888888864 34565666655443
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=6.4e-11 Score=113.98 Aligned_cols=231 Identities=9% Similarity=-0.026 Sum_probs=158.4
Q ss_pred CCEEEEEECCCCCeeeEEEecC-----CCCCEEEEEEcCCCCEEEEEec--CCeEEEEeCCCceeeEE-ecCCCcccEEE
Q 012679 160 GSTVYLWDASDGTTSELVTVDD-----ENGPVTSVNWAPDGRHIAIGLN--NCQVQLWDSTANRQLRT-LRGGHRSRVGS 231 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~-----h~~~V~~v~~s~~g~~la~g~~--dg~v~iwd~~~~~~~~~-~~~~~~~~v~~ 231 (458)
++.|.+||..+.+......+.+ +......+.|+|||++|+++.. ++.|.++| .+++.+.. +.. ...+..
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~~~~~ 172 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PTCYHI 172 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--CceEEE
Confidence 6789999999877643333320 0123568999999999999874 47899999 99998888 653 233333
Q ss_pred EEeCCCeEEEEeCCCcEEEEEccCCCeeEEEE----cccccc-eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcce
Q 012679 232 LAWNNHILTTGGMDGLIINNDVRVRDHIVETY----RGHNQE-VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQ 306 (458)
Q Consensus 232 l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~~h~~~-v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 306 (458)
..+.+..+++.+.||.+.++|. ++....... .....+ .....+.+++..++..+.++.+.+.|+.......
T Consensus 173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v--- 248 (373)
T 2mad_H 173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN--- 248 (373)
T ss_pred EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE---
Confidence 3445567788889999999999 665431111 011111 1234566766665555578899999987543210
Q ss_pred eeeeecc----------cccceeEEEecCCCCcEEEEeCCC-------CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcC
Q 012679 307 WLHRLEE----------HTSAVKAIAWCPFQSNLLATGGGG-------GDRCIKFWNTHTGACLNSVDTGSQVCALLWNK 369 (458)
Q Consensus 307 ~~~~~~~----------h~~~v~~l~~~p~~~~ll~s~~g~-------~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~ 369 (458)
+..+.. .......++++|++..++++.... .++.|.++|..+++.+..+..+.....+.|+|
T Consensus 249 -~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~ 327 (373)
T 2mad_H 249 -KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ 327 (373)
T ss_pred -eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECC
Confidence 111110 112234578899888887765310 23589999999999999999888899999999
Q ss_pred CCC-eEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679 370 NER-ELLSSHGFTQNQLTLWKYPSMVKMAEL 399 (458)
Q Consensus 370 ~~~-~l~~~~g~~d~~i~iwd~~~~~~~~~~ 399 (458)
+++ .++++ ...++.|.+||..+++.+..+
T Consensus 328 Dg~~~l~v~-~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 328 DGGPDLYAL-SAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCeEEEEE-cCCCCeEEEEECCCCCEEeee
Confidence 999 55553 445899999999999998874
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=2.1e-11 Score=119.00 Aligned_cols=235 Identities=9% Similarity=0.024 Sum_probs=164.6
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCC--cEEEEEccCCCee
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDG--LIINNDVRVRDHI 259 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg--~i~vwd~~~~~~~ 259 (458)
.....|+|+++|+++++...++.|++||..++........ .... . ++| ++..|+++..++ .|.+++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCce-
Confidence 4688999999999777777778999999988776655543 2222 2 666 467888888766 788888876543
Q ss_pred EEEE----cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee--ecccccce--eEEEecCCCCcEE
Q 012679 260 VETY----RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--LEEHTSAV--KAIAWCPFQSNLL 331 (458)
Q Consensus 260 ~~~~----~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~~~h~~~v--~~l~~~p~~~~ll 331 (458)
...+ ......+.+++++|++..|+.+..++.|+.||....... .... ..++...- ..++|+|++..++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~----~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT----LIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE----EEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE----EEecccccCCCCCCccccEEEeCCCCEEE
Confidence 2222 224566789999996555666777889999998765421 0100 11222222 2899999778888
Q ss_pred EEeCCCCCCeEEEEECCCCCeeEEEeCC---------------CCeEEEEEcCCCCeEEEEecC-CCCcEEEEeCCCcee
Q 012679 332 ATGGGGGDRCIKFWNTHTGACLNSVDTG---------------SQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMVK 395 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~~---------------~~v~~~~~s~~~~~l~~~~g~-~d~~i~iwd~~~~~~ 395 (458)
++.. .++.|+.|+.... ........ .....++++++++.+++ .. .++.|+.|+++++..
T Consensus 283 v~d~--~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--d~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 283 MSDQ--NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--DGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEET--TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--ETTTTCEEEEEETTTTEE
T ss_pred EEeC--CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--eCCCCCEEEEEECCCCEE
Confidence 8866 7889999997643 22222221 34789999999995555 44 678999999887764
Q ss_pred eEEEeCC---------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 396 MAELSGH---------------TSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 396 ~~~~~~h---------------~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
.++.++ -.....++++++|.++++-..++.|+.+++
T Consensus 358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 444444 245889999999988888888888888765
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.52 E-value=1.6e-10 Score=107.07 Aligned_cols=239 Identities=9% Similarity=-0.029 Sum_probs=167.8
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCC
Q 012679 179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVR 256 (458)
Q Consensus 179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~ 256 (458)
+......+.++++.++|+..++...++.|.+||.. ++........+...+.+++++ +.++++...++.|..+|.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 33445678999999999977777678999999988 554432222244678889885 5666666667889999987 4
Q ss_pred CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679 257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG 336 (458)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g 336 (458)
.............+.++++.++++++++...++.|..||.. +... ...+......+..+++.+++. ++++..
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-----~~~~~~~~~~~~~i~~d~~g~-l~v~~~- 164 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-----EYDLPNKGSYPAFITLGSDNA-LWFTEN- 164 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-----EEECSSTTCCEEEEEECTTSS-EEEEET-
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-----EccCCCCCCCceeEEECCCCC-EEEEec-
Confidence 43222223344678999999999988887778899999976 3320 112223345688999999766 666554
Q ss_pred CCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE-EEeCCCCcEEEEEEc
Q 012679 337 GGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFMAQS 412 (458)
Q Consensus 337 ~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l~~s 412 (458)
.++.|..+|. +++... +.. ...+..+++++++..+++. ...+.|.+|+. +++... .+..+...+.+++++
T Consensus 165 -~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 238 (300)
T 2qc5_A 165 -QNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVE--IMGNKIGRITT-TGEISEYDIPTPNARPHAITAG 238 (300)
T ss_dssp -TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEE--TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred -CCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEc--cCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence 5788999998 666544 322 3468899999998766653 35678999998 444332 233445678999999
Q ss_pred CCCCEEEEEeCCCcEEEEecC
Q 012679 413 PDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 413 pdg~~l~s~s~Dg~i~iW~~~ 433 (458)
++|++.++...++.|..|+..
T Consensus 239 ~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 239 KNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp STTCEEEEETTTTEEEEECTT
T ss_pred CCCCEEEeccCCCeEEEECCC
Confidence 999977776677899999984
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=2.3e-11 Score=116.13 Aligned_cols=246 Identities=13% Similarity=0.063 Sum_probs=169.0
Q ss_pred CCEEEEEECCCCCeeeEEEecC--C---CCCEEEEEEcCCCCEEEEEec--CCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679 160 GSTVYLWDASDGTTSELVTVDD--E---NGPVTSVNWAPDGRHIAIGLN--NCQVQLWDSTANRQLRTLRGGHRSRVGSL 232 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~--h---~~~V~~v~~s~~g~~la~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 232 (458)
++.|.+||..+++......+.. + ......++|+|||++|+++.. ++.|.++|+.+++.+.++... ....-.
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g~~~~~ 185 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--DCYHIF 185 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SEEEEE
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--Ccceee
Confidence 5789999999998744444432 0 124567999999999998864 689999999999999998742 211111
Q ss_pred EeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc----cceE-eEEEc-CCCCEEEEEECCCcEEEEeCCCCCCCCcce
Q 012679 233 AWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN----QEVC-GLKWS-ASGQQLASGGNDNLLHIWDRSMASSNSVTQ 306 (458)
Q Consensus 233 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~----~~v~-~l~~s-pd~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 306 (458)
......+++.+.||.+.+.++............+. ..+. ...|. ++|++++ .+.+|.|++.|........
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v--- 261 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF--- 261 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE---
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee---
Confidence 22457788889999999999976433322221111 1221 24564 5775544 5668999999987654311
Q ss_pred eeeeec----------ccccceeEEEecCCCCcEEEEeC----CC---CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcC
Q 012679 307 WLHRLE----------EHTSAVKAIAWCPFQSNLLATGG----GG---GDRCIKFWNTHTGACLNSVDTGSQVCALLWNK 369 (458)
Q Consensus 307 ~~~~~~----------~h~~~v~~l~~~p~~~~ll~s~~----g~---~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~ 369 (458)
...+. ........++++++++.++++.. |+ ..+.|.+.|+.+++.+..+..+..+.++.+++
T Consensus 262 -~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~ 340 (386)
T 3sjl_D 262 -LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQ 340 (386)
T ss_dssp -CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECS
T ss_pred -ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECC
Confidence 11111 11234456888998888887642 00 12579999999999999999988999999999
Q ss_pred CCC-eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC
Q 012679 370 NER-ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414 (458)
Q Consensus 370 ~~~-~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd 414 (458)
+++ .|+++.+ .++.|.++|..+++.+.++..- +.-..|.+++|
T Consensus 341 D~~~~ly~tn~-~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 341 DEKPLLYALST-GDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp SSSCEEEEEET-TTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCeEEEEEcC-CCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 997 6666543 6899999999999999988633 23345666665
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.48 E-value=1e-10 Score=109.00 Aligned_cols=227 Identities=9% Similarity=0.070 Sum_probs=154.1
Q ss_pred CCCCEEEEEEcCCC-CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCe
Q 012679 182 ENGPVTSVNWAPDG-RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDH 258 (458)
Q Consensus 182 h~~~V~~v~~s~~g-~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~ 258 (458)
+..-..+..|++++ .++++...++.|..||..+++. ..+. ....+.+++++ +.+ +.+. ++.|.+||..++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~--~~~~~~~i~~~~dG~l-~v~~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT--MDAPVSSVALRQSGGY-VATI-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE--CSSCEEEEEEBTTSSE-EEEE-TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe--CCCceEEEEECCCCCE-EEEE-CCeEEEEECCCCcE
Confidence 34456789999954 4556666788999999988765 3343 45678899994 564 4444 56799999876543
Q ss_pred eE-EEEc-c-cccceEeEEEcCCCCEEEEEECC---------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679 259 IV-ETYR-G-HNQEVCGLKWSASGQQLASGGND---------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 259 ~~-~~~~-~-h~~~v~~l~~spd~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
.. .... + ....+..++++|+|+++++...+ ....||.+..... ...+..+......++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~------~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH------VKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC------EEEEEEEESBEEEEEECTT
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC------EEEEeeccccccceEEcCC
Confidence 11 1111 1 12457889999999977654321 2234554433222 2223333445678999999
Q ss_pred CCcEEEEeCCCCCCeEEEEEC--CCCCee--EEE---e-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE
Q 012679 327 QSNLLATGGGGGDRCIKFWNT--HTGACL--NSV---D-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE 398 (458)
Q Consensus 327 ~~~ll~s~~g~~d~~i~lwd~--~~~~~~--~~~---~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~ 398 (458)
+..++++.+ .++.|..||+ .++... ..+ . .......++++++|+..++.. ..+.|.+||..+++.+..
T Consensus 160 g~~lyv~~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~--~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYIDS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY--NGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEEEG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE--TTTEEEEECTTTCCEEEE
T ss_pred CCEEEEecC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc--CCCEEEEEcCCCceEEEE
Confidence 888888765 6789999987 566542 112 1 124578899999998776643 567899999999999999
Q ss_pred EeCCCCcEEEEEEc-CCCCEEEEEeC
Q 012679 399 LSGHTSRVLFMAQS-PDGCTVASAAA 423 (458)
Q Consensus 399 ~~~h~~~V~~l~~s-pdg~~l~s~s~ 423 (458)
+..+...+++++|. |+++.|..++.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 98887889999998 88887655543
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=4e-12 Score=132.89 Aligned_cols=243 Identities=14% Similarity=0.117 Sum_probs=162.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEec-----CCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCC---------
Q 012679 182 ENGPVTSVNWAPDGRHIAIGLN-----NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDG--------- 246 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~g~~-----dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg--------- 246 (458)
|...+..++|||||++||.+.. ...|++||+.+++.+.... +......++| +++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWLGNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEETTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEeCCCEEEEEEecCccccccccc
Confidence 4556889999999999986543 2479999999998665422 1111234555 788888887774
Q ss_pred ----cEEEEEccCCCe---eEEEEcc-cccceEeEEEcCCCCEEEEEEC----CCcEEEEeCCCCCCCCcceeeeeeccc
Q 012679 247 ----LIINNDVRVRDH---IVETYRG-HNQEVCGLKWSASGQQLASGGN----DNLLHIWDRSMASSNSVTQWLHRLEEH 314 (458)
Q Consensus 247 ----~i~vwd~~~~~~---~~~~~~~-h~~~v~~l~~spd~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~h 314 (458)
.|++|++.+... .+..... |...+.++.|+|||++|+.... ++.|+++|+..+... ...+..+
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-----~~~l~~~ 279 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-----LLTVQGD 279 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC-----CEEEECS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc-----eEEEeCC
Confidence 399999877652 2222233 4556788999999998865442 358999998776421 3445555
Q ss_pred ccceeEEEecCCCCcEEEEeCC-CCCCeEEEEECCCCCe---eEEEeCCCCeEEEEEcCCCCeEEEEecCCCC--cEEEE
Q 012679 315 TSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWNTHTGAC---LNSVDTGSQVCALLWNKNERELLSSHGFTQN--QLTLW 388 (458)
Q Consensus 315 ~~~v~~l~~~p~~~~ll~s~~g-~~d~~i~lwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~--~i~iw 388 (458)
....... |++++..+++.... ...+.|..+|+.++.. ...+.....+. .|+++++.|+.... .++ .|.+|
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~-~~g~~~l~~~ 355 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM-VDATARVEQF 355 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE-ETTEEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE-ECCeeEEEEE
Confidence 5555554 66777777776541 1246899999988765 33333334443 89999998887542 343 68899
Q ss_pred eCCCceeeEEEe-CCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEecCCCC
Q 012679 389 KYPSMVKMAELS-GHTSRVLFMAQSPDGCTVASAAAD----ETLRFWNVFGAP 436 (458)
Q Consensus 389 d~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~D----g~i~iW~~~~~~ 436 (458)
++..+. ...+. ...+.+..+.+++++..|+....+ ++|..||+.+++
T Consensus 356 d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 356 DYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 987543 34443 344567788888888877655544 789999987654
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.46 E-value=3e-11 Score=117.30 Aligned_cols=266 Identities=10% Similarity=0.013 Sum_probs=178.7
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCC-----
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGH----- 225 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~----- 225 (458)
+.|.++|..+++.. .++.....+ .++++|||++|+++. .++.|.++|..+++.+..+..+.
T Consensus 99 ~~VsVID~~t~~vv--~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTGRIL--GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTTEEE--EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEECCCCEEE--EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 69999999999884 444433444 899999999998886 36789999999999988875320
Q ss_pred -cccEEEEEe--CCCeEEEEeC--CCcEEEEEccCCCeeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCC
Q 012679 226 -RSRVGSLAW--NNHILTTGGM--DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 226 -~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~ 299 (458)
......+.+ ++++++++.. ++.|.+.|+.+.+. +..+.-.. . ....|+ ...+++.+.||.+.+.+....
T Consensus 175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~ 249 (426)
T 3c75_H 175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADG 249 (426)
T ss_dssp BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTT
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCC
Confidence 112234455 6788888764 57899999998764 44443211 1 223343 355666777888888887443
Q ss_pred CCCCcceeeeeecccccc-eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee--EEEeC-----------CCCeEEE
Q 012679 300 SSNSVTQWLHRLEEHTSA-VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL--NSVDT-----------GSQVCAL 365 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~--~~~~~-----------~~~v~~~ 365 (458)
+..... ...+.....+ ...+.+.+++..++++. ..+.+.+.|...+... ..+.. ......+
T Consensus 250 ~v~~~~--~~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 250 ETKVTN--TEVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp CCEEEE--CCCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred cEEEEe--eeeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence 321000 0011111111 12456788888877765 5689999998765422 11111 1112236
Q ss_pred EEcCCCCeEEEEecC--------CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCC
Q 012679 366 LWNKNERELLSSHGF--------TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAA-ADETLRFWNVFGA 435 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~--------~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~i~iW~~~~~ 435 (458)
.++++++.++++... ..+.|.++|..+.+.+.++... ....+++|+|||+ .++++. .++.|.++|+.+.
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 899999988886431 2357999999999999988632 2578999999999 888888 5999999999998
Q ss_pred Cccccc
Q 012679 436 PQVISK 441 (458)
Q Consensus 436 ~~~~~~ 441 (458)
+.+.+.
T Consensus 404 kvv~tI 409 (426)
T 3c75_H 404 EELRSV 409 (426)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 877653
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.45 E-value=7.8e-11 Score=110.22 Aligned_cols=239 Identities=10% Similarity=0.090 Sum_probs=156.6
Q ss_pred cceeeccC-CCeEEE--------EcCCEEEEEECCCCCeeeEEE--ecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEe
Q 012679 144 LNLLDWGS-SNVLAI--------ALGSTVYLWDASDGTTSELVT--VDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWD 211 (458)
Q Consensus 144 ~~~~~~~~-~~~la~--------~~d~~v~iwd~~~~~~~~~~~--~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd 211 (458)
...+.|++ ++++.+ ..++.|++||..+++...+.. ..++...+.+++++++ |+++ +++..+.|.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE-EEECCCCEEEEe
Confidence 34567765 456666 678899999988888643321 0124467999999999 6544 444455799999
Q ss_pred CCCceeeEE-ecC---CCcccEEEEEeC--CCeEEEEeCC---------------CcEEEEEccCCCeeEEEEcccccce
Q 012679 212 STANRQLRT-LRG---GHRSRVGSLAWN--NHILTTGGMD---------------GLIINNDVRVRDHIVETYRGHNQEV 270 (458)
Q Consensus 212 ~~~~~~~~~-~~~---~~~~~v~~l~~~--~~~l~sg~~d---------------g~i~vwd~~~~~~~~~~~~~h~~~v 270 (458)
.. ++.... ... .....+.+++++ +.++++...+ +.|..+|.. +. ...+..+....
T Consensus 99 ~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~ 174 (314)
T 1pjx_A 99 TD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQFP 174 (314)
T ss_dssp TT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESSE
T ss_pred CC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccCCCCc
Confidence 88 665432 221 122457888884 5666666554 567777765 33 22223334456
Q ss_pred EeEEEc----CCCCEEEEE-ECCCcEEEEeCC-CCCCCCcceeeeeecccc-cceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679 271 CGLKWS----ASGQQLASG-GNDNLLHIWDRS-MASSNSVTQWLHRLEEHT-SAVKAIAWCPFQSNLLATGGGGGDRCIK 343 (458)
Q Consensus 271 ~~l~~s----pd~~~l~sg-~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~ll~s~~g~~d~~i~ 343 (458)
.+++|+ |+++.|+.+ ..++.|.+||.. .+... .......+..+. ..+..+++++++. ++++.. .++.|.
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~--~~~~i~ 250 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE-NKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW--GSSHIE 250 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE-EEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE--TTTEEE
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc-cceEEEECCCCCCCCCCceEECCCCC-EEEEEc--CCCEEE
Confidence 889999 999766555 567899999976 22210 001122333343 5678899999764 555443 578999
Q ss_pred EEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 344 FWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 344 lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
+||..+++.+..+... ..+.+++++++++.|+++. ..++.|..|+...
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE-HENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE-TTTTEEEEEECSS
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe-CCCCeEEEEeCCC
Confidence 9999888877777654 6789999999999776653 3567899998764
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.45 E-value=1.7e-12 Score=124.29 Aligned_cols=171 Identities=12% Similarity=0.006 Sum_probs=133.5
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-----------eeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEc
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-----------QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDV 253 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~ 253 (458)
.+..+++++...++++|+.+ .+.+|++...+ ...... +.. |..++|++..|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 68999999999999999998 56679865433 112222 566 99999988899998 8899999999
Q ss_pred cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s 333 (458)
++... ......|...+.++.+.+.. +++++.||.|.+||+..... .. +...|++++|+|.| + +.
T Consensus 114 ~sl~~-~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~------~~----~~~~Vs~v~WSpkG--~-~v 177 (388)
T 1xip_A 114 EELSE-FRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKST------KQ----LAQNVTSFDVTNSQ--L-AV 177 (388)
T ss_dssp SSTTC-EEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCE------EE----EEESEEEEEECSSE--E-EE
T ss_pred hhhhc-cCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcc------cc----ccCCceEEEEcCCc--e-EE
Confidence 87664 44566777888888877653 99999999999999987654 21 45689999999987 3 44
Q ss_pred eCCCCCCeEEEEECCCCCe--eEEE------e----CCCCeEEEEEcCCCCeEEEEe
Q 012679 334 GGGGGDRCIKFWNTHTGAC--LNSV------D----TGSQVCALLWNKNERELLSSH 378 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~~~--~~~~------~----~~~~v~~~~~s~~~~~l~~~~ 378 (458)
|. .||.+++|+...+++ ..++ . +...|.++.|.+++.++++-.
T Consensus 178 g~--~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 178 LL--KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EE--TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EE--cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 44 799999999888776 5566 2 356799999999999988743
No 211
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.44 E-value=1.7e-11 Score=128.26 Aligned_cols=202 Identities=9% Similarity=0.026 Sum_probs=137.9
Q ss_pred CcccEEEEEe--CCCeEE-----EEeCCCcEEEEEccCCCee-EEEEcccccceEeEEEcCCCCEEEEEECCCc------
Q 012679 225 HRSRVGSLAW--NNHILT-----TGGMDGLIINNDVRVRDHI-VETYRGHNQEVCGLKWSASGQQLASGGNDNL------ 290 (458)
Q Consensus 225 ~~~~v~~l~~--~~~~l~-----sg~~dg~i~vwd~~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~------ 290 (458)
|...+..++| ++++|+ .|+.+..|++||+.++... ...+.. .....++|+|||+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccc
Confidence 5567888888 467777 3344568999999987642 111211 11268999999999999998876
Q ss_pred -------EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC-CCCeEEEEECCCCCeeEEEeCCCCe
Q 012679 291 -------LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG-GDRCIKFWNTHTGACLNSVDTGSQV 362 (458)
Q Consensus 291 -------i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~-~d~~i~lwd~~~~~~~~~~~~~~~v 362 (458)
|++|++.++.... ..+.....|...+..+.|+|++..++++.... ....|.+||..+++..........+
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~--~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 274 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKD--TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK 274 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGC--EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC
T ss_pred cCCCCCEEEEEECCCCchhc--eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce
Confidence 9999998765311 12334445666788999999998888776311 1236788877666655555555556
Q ss_pred EEEEEcCCCCeEEEEec--CCCCcEEEEeCCCcee--eEEEeCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 363 CALLWNKNERELLSSHG--FTQNQLTLWKYPSMVK--MAELSGH--TSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 363 ~~~~~s~~~~~l~~~~g--~~d~~i~iwd~~~~~~--~~~~~~h--~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
....| +++. ++..+. ..++.|.+||+.++.. ...+..| ...+..++|+ ++.++++...|+..+||.+.
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 66666 5666 555432 1367899999987653 2344433 4568888998 77888999999998888765
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=1.7e-11 Score=129.26 Aligned_cols=253 Identities=13% Similarity=0.047 Sum_probs=162.8
Q ss_pred CceeeeCCCCCCc--cccceeeccCC-CeEEEEc-C-----CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEE
Q 012679 129 SERTLDAPDLVDD--YYLNLLDWGSS-NVLAIAL-G-----STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA 199 (458)
Q Consensus 129 ~~~~l~~~~~~~d--~~~~~~~~~~~-~~la~~~-d-----~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la 199 (458)
++.++|...+..+ +.+..+.|+++ +.++.+. + ..|++||+.+++.... .+. ...+..++|+|| +.|+
T Consensus 148 ~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~--~~~~~~~~wspD-~~l~ 223 (741)
T 1yr2_A 148 GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELK--WVKFSGLAWLGN-DALL 223 (741)
T ss_dssp CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEE--EEESCCCEESTT-SEEE
T ss_pred CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCC--CceeccEEEECC-CEEE
Confidence 4555555444444 36778899983 4444433 2 3699999999987432 111 112357899999 9999
Q ss_pred EEecCCe--------------EEEEeCCCcee--eEEecC-CCcccEEEEEe--CCCeEEEEeCCC-----cEEEEEccC
Q 012679 200 IGLNNCQ--------------VQLWDSTANRQ--LRTLRG-GHRSRVGSLAW--NNHILTTGGMDG-----LIINNDVRV 255 (458)
Q Consensus 200 ~g~~dg~--------------v~iwd~~~~~~--~~~~~~-~~~~~v~~l~~--~~~~l~sg~~dg-----~i~vwd~~~ 255 (458)
.++.++. |++|++.++.. ...+.. .+...+..+.| +|++|+..+.++ .|++||+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence 8887654 89999987652 122222 13345788888 467777776543 899999987
Q ss_pred CCee-EEEEcccccceEeEEEcCCCCEEEEEECC----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679 256 RDHI-VETYRGHNQEVCGLKWSASGQQLASGGND----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330 (458)
Q Consensus 256 ~~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 330 (458)
+... ...+..+...+.... +|+|+.|+..+++ +.|.+||+..+. . .+...+..+...+..++|. +..+
T Consensus 304 ~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~---~~~~l~~~~~~~l~~~~~~--~~~l 376 (741)
T 1yr2_A 304 GKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-P---RFDTVVPESKDNLESVGIA--GNRL 376 (741)
T ss_dssp TEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-C---EEEEEECCCSSEEEEEEEE--BTEE
T ss_pred CCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-c---ccEEEecCCCCeEEEEEEE--CCEE
Confidence 6222 344444444444443 4899999888864 459999987642 0 1123333444556677776 4567
Q ss_pred EEEeCCCCCCeEEEEECC-CCCeeEEEeC--CCCeEEEEEcCCCCeEEEEe--cCCCCcEEEEeCCCce
Q 012679 331 LATGGGGGDRCIKFWNTH-TGACLNSVDT--GSQVCALLWNKNERELLSSH--GFTQNQLTLWKYPSMV 394 (458)
Q Consensus 331 l~s~~g~~d~~i~lwd~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~--g~~d~~i~iwd~~~~~ 394 (458)
+++.. .|+..++|.+. ++.....+.. ...+..+.++++++.++.+. ....++|++||+.+++
T Consensus 377 v~~~~--~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 377 FASYI--HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEE--ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEE--ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 77765 78877776544 4666666653 45688899999998776442 2345789999998876
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=4.2e-10 Score=106.35 Aligned_cols=217 Identities=9% Similarity=-0.018 Sum_probs=147.1
Q ss_pred EEEEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679 186 VTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVET 262 (458)
Q Consensus 186 V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~ 262 (458)
..+..|+|++. +++++..++.|.+||..+++.. .+. ....+.+++|+ +.+++ ++.+ .|.+||..++.. ..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~g~~--~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVL--TL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCE--EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCeEEE-EECC-CEEEEECCCCcE--EE
Confidence 46778999754 5566667889999999887643 333 34578899884 55554 4444 499999876653 22
Q ss_pred Ecc-----cccceEeEEEcCCCCEEEEEEC------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679 263 YRG-----HNQEVCGLKWSASGQQLASGGN------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 263 ~~~-----h~~~v~~l~~spd~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll 331 (458)
+.. ....+.++.++|+|+++++... .+.|..++ .+. ...+..+......++|+|++..++
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-------~~~~~~~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-------VTKLFADISIPNSICFSPDGTTGY 194 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-------EEEEEEEESSEEEEEECTTSCEEE
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-------EEEeeCCCcccCCeEEcCCCCEEE
Confidence 211 1246889999999997765542 24555565 222 222223334567899999988887
Q ss_pred EEeCCCCCCeEEEEECC--CC-Ce-----eEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679 332 ATGGGGGDRCIKFWNTH--TG-AC-----LNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH 402 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~--~~-~~-----~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h 402 (458)
++.. .++.|.+||+. ++ .. +..+. .......++++++|..+++.. .++.|.+|+. +++.+..+..+
T Consensus 195 v~~~--~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~--~~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 195 FVDT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW--GEGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp EEET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE--TTTEEEEECT-TCCEEEEEECS
T ss_pred EEEC--CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe--CCCEEEEECC-CCCEEEEEECC
Confidence 7765 67899999986 56 32 21221 134467899999998777643 4678999998 67777778777
Q ss_pred CCcEEEEEEc-CCCCEEEEEeC
Q 012679 403 TSRVLFMAQS-PDGCTVASAAA 423 (458)
Q Consensus 403 ~~~V~~l~~s-pdg~~l~s~s~ 423 (458)
...+++++|+ +++..|+.++.
T Consensus 270 ~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 270 GKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCcEEEEEecCCCCEEEEEec
Confidence 7789999998 88887755544
No 214
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.37 E-value=5.7e-11 Score=123.35 Aligned_cols=283 Identities=10% Similarity=0.048 Sum_probs=187.9
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC-----------CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENG-----------PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~-----------~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
.+.+++++.++.|+.+|..+|+. +.++..... ....+++ ++..|++++.|+.|..+|..+++.+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNR--IWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEE--EEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcE--EEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 35677777789999999999987 444432211 0012222 46688899999999999999999998
Q ss_pred EecCCCc----ccEE-EEEeCCCeEEEEeC------CCcEEEEEccCCCeeEEEEccc----------------------
Q 012679 220 TLRGGHR----SRVG-SLAWNNHILTTGGM------DGLIINNDVRVRDHIVETYRGH---------------------- 266 (458)
Q Consensus 220 ~~~~~~~----~~v~-~l~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~h---------------------- 266 (458)
.+..... ..+. .....+..++.++. +|.|+.+|..+++.........
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred eecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 8875201 1111 11223455555553 7899999999887643332211
Q ss_pred ---------ccceEeEEEcCCCCEEEEEECCC-------------------cEEEEeCCCCCCCCcceeeeeecccc---
Q 012679 267 ---------NQEVCGLKWSASGQQLASGGNDN-------------------LLHIWDRSMASSNSVTQWLHRLEEHT--- 315 (458)
Q Consensus 267 ---------~~~v~~l~~spd~~~l~sg~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~h~--- 315 (458)
......++++|++..++.++.++ .|..+|..+++. .+......|.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~----~W~~~~~~~d~wd 308 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY----KWHYQETPGDNWD 308 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE----EEEEESSTTCCSC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE----EEEEecCCCcccc
Confidence 01113578889999998887664 499999988875 2222332231
Q ss_pred ----cceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC------------e---------------
Q 012679 316 ----SAVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ------------V--------------- 362 (458)
Q Consensus 316 ----~~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~------------v--------------- 362 (458)
....-+....++. .+++.++ .+|.|+++|..+|+.+..+..... +
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 386 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV 386 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred cccCCCcEEEecccCCcEeeEEEEEC--CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence 1111222223443 5566655 899999999999999877653210 0
Q ss_pred ---------EEEEEcCCCCeEEEEecC-----------------------------------------CCCcEEEEeCCC
Q 012679 363 ---------CALLWNKNERELLSSHGF-----------------------------------------TQNQLTLWKYPS 392 (458)
Q Consensus 363 ---------~~~~~s~~~~~l~~~~g~-----------------------------------------~d~~i~iwd~~~ 392 (458)
..++++|+...+++.... ..+.|..||+.+
T Consensus 387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t 466 (677)
T 1kb0_A 387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA 466 (677)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred cCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC
Confidence 146788988888774321 127899999999
Q ss_pred ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 393 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
++.+.++. +..++....+..++..++.++.||.|++||..+++.+.+...+
T Consensus 467 G~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 467 QKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 99988876 3344455556677888999999999999999999988775543
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.36 E-value=1.7e-09 Score=100.56 Aligned_cols=225 Identities=14% Similarity=0.133 Sum_probs=147.6
Q ss_pred cceeeccC--CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 144 LNLLDWGS--SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 144 ~~~~~~~~--~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.....|++ +.++.+. .++.|+.||..+++.. ... ....+.+++++++|++++ +. ++.|.+||..+++....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT---MDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE---CSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe---CCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEE
Confidence 34567776 3455554 4689999999987752 222 246799999999999544 44 56899999988765433
Q ss_pred ecC---CCcccEEEEEeC--CCeEEEEeCC---------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EE
Q 012679 221 LRG---GHRSRVGSLAWN--NHILTTGGMD---------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SG 285 (458)
Q Consensus 221 ~~~---~~~~~v~~l~~~--~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg 285 (458)
... .....+..++++ +.++++.... ..-.+|.+...... ..+..+.....+++|+||++.|+ +.
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYID 167 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEec
Confidence 221 123457888885 5655543221 22345544433322 22333445578999999998775 45
Q ss_pred ECCCcEEEEeCC--CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCe
Q 012679 286 GNDNLLHIWDRS--MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQV 362 (458)
Q Consensus 286 ~~dg~i~iwd~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v 362 (458)
+.++.|.+||+. ++... ..+....+..+......+++.+++ .+.++.. ..+.|..||..+++.+..+..+ ..+
T Consensus 168 ~~~~~i~~~~~d~~~G~~~-~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~--~~~~v~~~d~~tG~~~~~i~~p~~~~ 243 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQIS-NRRSVYKLEKEEQIPDGMCIDAEG-KLWVACY--NGGRVIRLDPVTGKRLQTVKLPVDKT 243 (297)
T ss_dssp GGGTEEEEEEECTTTCCEE-EEEEEEECCGGGCEEEEEEEBTTS-CEEEEEE--TTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred CCCCcEEEEeccCCCCccc-CcEEEEECCCCCCCCCeeEECCCC-CEEEEEc--CCCEEEEEcCCCceEEEEEECCCCCc
Confidence 567899999974 33211 011123333445667899999987 4555543 5678999999999999998876 579
Q ss_pred EEEEEc-CCCCeEEEEec
Q 012679 363 CALLWN-KNERELLSSHG 379 (458)
Q Consensus 363 ~~~~~s-~~~~~l~~~~g 379 (458)
++++|. |+++.|++++.
T Consensus 244 t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 244 TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEESGGGCEEEEEEB
T ss_pred eEEEEeCCCCCEEEEEcC
Confidence 999998 88888887654
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.36 E-value=4.9e-10 Score=104.71 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=151.7
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC
Q 012679 181 DENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD 257 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~ 257 (458)
..........|+|+|+ +++++..++.|..|+. +++ ...+.. +...+..++++ +.++++...++.|.+|+.. +.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 3455678899999998 5666777889999997 444 344443 55678889985 5655555556889999986 33
Q ss_pred eeEEEEccc-----ccceEeEEEcCCCCEEEE----EEC-------------CCcEEEEeCCCCCCCCcceeeeeecccc
Q 012679 258 HIVETYRGH-----NQEVCGLKWSASGQQLAS----GGN-------------DNLLHIWDRSMASSNSVTQWLHRLEEHT 315 (458)
Q Consensus 258 ~~~~~~~~h-----~~~v~~l~~spd~~~l~s----g~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 315 (458)
. ..+..+ ...+..++++++|+++++ |.. .+.|..||..++.. ..+. ..
T Consensus 118 ~--~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-------~~~~-~~ 187 (305)
T 3dr2_A 118 A--HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-------QRMA-DL 187 (305)
T ss_dssp E--EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-------EEEE-EE
T ss_pred E--EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-------EEEe-cC
Confidence 2 222111 134678999999998886 332 25677777655543 1122 33
Q ss_pred cceeEEEecCCCCcEEEEeCCC---CCCeEEEEECCCCCee--EEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679 316 SAVKAIAWCPFQSNLLATGGGG---GDRCIKFWNTHTGACL--NSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLW 388 (458)
Q Consensus 316 ~~v~~l~~~p~~~~ll~s~~g~---~d~~i~lwd~~~~~~~--~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw 388 (458)
.....++|+|++..++++.... ..+.|.+|++..+... ..+. .......++++++|+..++. .+.|.+|
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~----~~gv~~~ 263 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS----GTGVCVF 263 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC----SSEEEEE
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec----CCcEEEE
Confidence 4567899999988777765410 0378999998765411 1111 13345678999999955442 3459999
Q ss_pred eCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 012679 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLR 428 (458)
Q Consensus 389 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~ 428 (458)
+. .++.+..+..+. .+.+++|+|+++.|..++.++..+
T Consensus 264 ~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 264 DS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 97 577777776555 588999999999888887765433
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.35 E-value=2.8e-10 Score=110.47 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=163.6
Q ss_pred cCCEEEEEECCCCCeeeEEEecCC-----CCCEEEEEEcCCCCEEEEEec--CCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679 159 LGSTVYLWDASDGTTSELVTVDDE-----NGPVTSVNWAPDGRHIAIGLN--NCQVQLWDSTANRQLRTLRGGHRSRVGS 231 (458)
Q Consensus 159 ~d~~v~iwd~~~~~~~~~~~~~~h-----~~~V~~v~~s~~g~~la~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 231 (458)
.++.|.++|..+++......+.+. ......+.|+|||++|+++.. ++.|.+.|+.+++.+.++..+.. ..
T Consensus 147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~ 223 (426)
T 3c75_H 147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YH 223 (426)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EE
T ss_pred CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---ee
Confidence 367999999999987544444311 123567899999999999874 57899999999999998875221 22
Q ss_pred EEe-CCCeEEEEeCCCcEEEEEccCCCeeEEE----Ecccccc-eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679 232 LAW-NNHILTTGGMDGLIINNDVRVRDHIVET----YRGHNQE-VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 232 l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~----~~~h~~~-v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~ 305 (458)
+.. ....+++.+.||.+.+.+...+.. ... +.....+ ...+.|.+++..++..+..+.|.+.|..........
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~ 302 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFADGET-KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA 302 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECCTTCC-EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC
T ss_pred eccCCCcEEEEEcCCCCEEEEECCCCcE-EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee
Confidence 222 346777888899999888844432 211 1111111 123568899998888888899999998654321000
Q ss_pred eeeeeec-------ccccceeEEEecCCCCcEEEEeCC----C---CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCC
Q 012679 306 QWLHRLE-------EHTSAVKAIAWCPFQSNLLATGGG----G---GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE 371 (458)
Q Consensus 306 ~~~~~~~-------~h~~~v~~l~~~p~~~~ll~s~~g----~---~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~ 371 (458)
. ..... ........++++|++..++++... + .++.|.++|..+++.+..+..+.....+.|+|++
T Consensus 303 ~-~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg 381 (426)
T 3c75_H 303 P-IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDA 381 (426)
T ss_dssp C-EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSS
T ss_pred e-eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCC
Confidence 0 00000 011222347899998888876421 0 1357999999999999999888889999999999
Q ss_pred C-eEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679 372 R-ELLSSHGFTQNQLTLWKYPSMVKMAEL 399 (458)
Q Consensus 372 ~-~l~~~~g~~d~~i~iwd~~~~~~~~~~ 399 (458)
+ .++++. ..++.|.++|..+++.+.++
T Consensus 382 ~~~lyv~n-~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 382 EPLLYALS-AGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp SCEEEEEE-TTTTEEEEEETTTCCEEEEE
T ss_pred CEEEEEEc-CCCCeEEEEECCCCCEEEEe
Confidence 9 777654 36899999999999999887
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.34 E-value=2.3e-10 Score=119.06 Aligned_cols=283 Identities=12% Similarity=0.083 Sum_probs=183.5
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCC----------E-EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGP----------V-TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~----------V-~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
.+.+++++.++.|+.+|..+|+. +.++..+... + ..+.. ++..|++++.||.|..+|..+|+.+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRL--IWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCce--eEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence 36677777889999999999987 5554332210 0 11122 45688899999999999999999988
Q ss_pred EecCC-Cc---ccEE-EEEeCCCeEEEEe------CCCcEEEEEccCCCeeEEEEcc-----------------------
Q 012679 220 TLRGG-HR---SRVG-SLAWNNHILTTGG------MDGLIINNDVRVRDHIVETYRG----------------------- 265 (458)
Q Consensus 220 ~~~~~-~~---~~v~-~l~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~----------------------- 265 (458)
.+... +. ..+. +-...+..++.++ .+|.|..||.++++..-.....
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred eecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 77642 11 1111 1111234445543 3789999999988864333211
Q ss_pred -------cccceEeEEEcCCCCEEEEEECCCc-------------------EEEEeCCCCCCCCcceeeeeecccc----
Q 012679 266 -------HNQEVCGLKWSASGQQLASGGNDNL-------------------LHIWDRSMASSNSVTQWLHRLEEHT---- 315 (458)
Q Consensus 266 -------h~~~v~~l~~spd~~~l~sg~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~h~---- 315 (458)
+......++++|++.+++.++.++. |..+|..+++. .+......|.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~----~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY----VWHYQTTPGDAWDY 301 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE----EEEEESSTTCCSCC
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce----eEeeecCCcccccc
Confidence 0011135788898899999887764 99999998876 2222222221
Q ss_pred ---cceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC------------------------------
Q 012679 316 ---SAVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGS------------------------------ 360 (458)
Q Consensus 316 ---~~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~------------------------------ 360 (458)
..+.......++. .+++.++ .+|.++++|..+|+.+.......
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~ 379 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAP--KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRN 379 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEEC--CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCee
Confidence 1111111111232 2566654 89999999999999885443211
Q ss_pred ----------CeEEEEEcCCCCeEEEEecC-------------------------------------------CCCcEEE
Q 012679 361 ----------QVCALLWNKNERELLSSHGF-------------------------------------------TQNQLTL 387 (458)
Q Consensus 361 ----------~v~~~~~s~~~~~l~~~~g~-------------------------------------------~d~~i~i 387 (458)
....++++|+...+++.... .+|.|..
T Consensus 380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A 459 (689)
T 1yiq_A 380 LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA 459 (689)
T ss_dssp EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence 11236788888877764211 0377999
Q ss_pred EeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
||+.+++.+.++..+.. +..-.+...+.+++.++.||.|+.||..+++.+.+...+
T Consensus 460 ~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 460 WDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 99999999988875542 333355667889999999999999999999988765443
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.30 E-value=3.8e-09 Score=101.68 Aligned_cols=269 Identities=10% Similarity=0.042 Sum_probs=170.6
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCC-------CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDE-------NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG 223 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h-------~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~ 223 (458)
.+.+++++.++.|+.+|..+|+..-...+... ...+.+. ...++..+++++.+|.|..+|..+++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 46677777889999999999987333333211 1223222 222456788899999999999999998877764
Q ss_pred CCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccce-----EeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 224 GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV-----CGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 224 ~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v-----~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
...........+..++.++.++.|..+|..+++..... ....... ..... .+..++.++.++.|..+|..+
T Consensus 132 -~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 132 -AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTV-NLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp -SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTT
T ss_pred -CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEE-eCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCC
Confidence 22222222334678888999999999999888753322 2111110 11222 245678888899999999988
Q ss_pred CCCCCcceeeeeecccc--cc--------e-eEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEE
Q 012679 299 ASSNSVTQWLHRLEEHT--SA--------V-KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLW 367 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~--~~--------v-~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~ 367 (458)
++. +....... .. + ..... .+..+++ ++ .++.+..+|..+|+.+....... ...+..
T Consensus 208 G~~------~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~-~~--~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~ 275 (376)
T 3q7m_A 208 GQM------IWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFA-LA--YNGNLTALDLRSGQIMWKRELGS-VNDFIV 275 (376)
T ss_dssp CCE------EEEEECCC-----------CCCCCCEE--ETTEEEE-EC--TTSCEEEEETTTCCEEEEECCCC-EEEEEE
T ss_pred CcE------EEEEecccCCCCcccccccccCCCcEE--ECCEEEE-Ee--cCcEEEEEECCCCcEEeeccCCC-CCCceE
Confidence 765 22221110 00 0 01111 1344444 33 78999999999999887776443 333333
Q ss_pred cCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 368 NKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 368 s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
++..++++ ..++.|..+|..+++.+...... ...+..... .+..|+.++.+|.|.++|..+++...+..
T Consensus 276 --~~~~l~~~--~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 276 --DGNRIYLV--DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp --ETTEEEEE--ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred --ECCEEEEE--cCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 35566663 36889999999999988776522 222222333 24578889999999999998887765543
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.28 E-value=3.4e-09 Score=102.01 Aligned_cols=260 Identities=12% Similarity=0.037 Sum_probs=164.7
Q ss_pred eccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcc
Q 012679 148 DWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS 227 (458)
Q Consensus 148 ~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~ 227 (458)
....+.+++++.++.|+.+|..+|+..-...+.. ........ .+..+++++.+|.|..+|..+++.+..... ...
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~~~ 174 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG--EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMP 174 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECSS--CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC-CC-
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC--ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC-CCC
Confidence 3345778888889999999999998733333322 11111112 245788899999999999999998887764 211
Q ss_pred cE-----EEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc------ceEeEEEcC--CCCEEEEEECCCcEEEE
Q 012679 228 RV-----GSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ------EVCGLKWSA--SGQQLASGGNDNLLHIW 294 (458)
Q Consensus 228 ~v-----~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~------~v~~l~~sp--d~~~l~sg~~dg~i~iw 294 (458)
.. ......+..++.++.+|.|..+|..+++.....-..... .+..+.-.| .+..++.++.++.+..+
T Consensus 175 ~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 175 SLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp ----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred ceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 11 222334677888899999999999887754332211110 000011111 35677888889999999
Q ss_pred eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-C-CCeEEEEEcCCCC
Q 012679 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-G-SQVCALLWNKNER 372 (458)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~-~~v~~~~~s~~~~ 372 (458)
|..+++. +.... ......+... +..+++.. .++.|..+|..+|+.+..... . ..+..... .+.
T Consensus 255 d~~tG~~------~w~~~--~~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~ 319 (376)
T 3q7m_A 255 DLRSGQI------MWKRE--LGSVNDFIVD--GNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNG 319 (376)
T ss_dssp ETTTCCE------EEEEC--CCCEEEEEEE--TTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETT
T ss_pred ECCCCcE------Eeecc--CCCCCCceEE--CCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECC
Confidence 9988765 22222 1223344443 45555544 688999999999998877752 2 22222222 245
Q ss_pred eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEe
Q 012679 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLF-MAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
.+++ +..+|.|.++|..+++.+.........+.. ... .+..|+.++.||.|..|+
T Consensus 320 ~l~v--~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 320 NLVV--GDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEE--ECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEE--EeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 6666 447899999999999988877653333322 222 245778899999999987
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=5.7e-10 Score=106.48 Aligned_cols=238 Identities=8% Similarity=-0.038 Sum_probs=151.4
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCCc-----
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGHR----- 226 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~~----- 226 (458)
.|.++|..+++. +.++.....+ .+.++|||++++++. .++.|.+||+.+++.+.++..+..
T Consensus 47 ~vsvID~~t~~v--~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVT--LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEE--EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECCCCeE--EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 899999999988 4444433445 799999999999886 367899999999999999864200
Q ss_pred -ccEEEEEe--CCCeEEEEeC--CCcEEE--EEccCCCeeEEEEcc-cc------cceEeEEE-----------------
Q 012679 227 -SRVGSLAW--NNHILTTGGM--DGLIIN--NDVRVRDHIVETYRG-HN------QEVCGLKW----------------- 275 (458)
Q Consensus 227 -~~v~~l~~--~~~~l~sg~~--dg~i~v--wd~~~~~~~~~~~~~-h~------~~v~~l~~----------------- 275 (458)
.....+++ ++++++++.. +..|.+ +|..+ +..+.. .. +.-.-+.+
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 12234444 6788888764 456888 88865 111110 00 00000111
Q ss_pred --------------------cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc----------cccceeEEEecC
Q 012679 276 --------------------SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE----------HTSAVKAIAWCP 325 (458)
Q Consensus 276 --------------------spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~~p 325 (458)
.+++..++..+. +.|.+.|....... .+..+.- .......++++|
T Consensus 199 ~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~----v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGAT----MKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCE----EECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcce----EEEEEEeccccccccccccCcceeeEEcC
Confidence 222333333333 55555555432110 0111100 011122378999
Q ss_pred CCCcEEEEeCCC-C-----CCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679 326 FQSNLLATGGGG-G-----DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL 399 (458)
Q Consensus 326 ~~~~ll~s~~g~-~-----d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~ 399 (458)
++..++++.... . +..+.++|+.+++.+..+..+.....+.|+++++.++++.+..++.|.++|+.+++.+.++
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 988888764200 1 2346699999999999998888899999999999877765545899999999999999998
Q ss_pred eCCCCcEEEEEEcC
Q 012679 400 SGHTSRVLFMAQSP 413 (458)
Q Consensus 400 ~~h~~~V~~l~~sp 413 (458)
..... ...+++.+
T Consensus 354 ~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 354 ELDKG-PESLSVQN 366 (368)
T ss_dssp CCCSC-CCEEECCC
T ss_pred ECCCC-CCEEEeec
Confidence 75543 34566543
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.25 E-value=2.8e-08 Score=93.74 Aligned_cols=220 Identities=9% Similarity=-0.004 Sum_probs=141.7
Q ss_pred ceeeccC--CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 145 NLLDWGS--SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 145 ~~~~~~~--~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
....|++ +.++.+. .++.|+.||..+++... ... ...+.+++|+++|+++++. .+ .|.+||..+++.....
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~---~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL---PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC---SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC---CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 3466776 3455554 47899999998876532 222 4579999999999876654 44 5999999887754332
Q ss_pred cC---CCcccEEEEEeC--CCeEEEEeC------CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE-ECCC
Q 012679 222 RG---GHRSRVGSLAWN--NHILTTGGM------DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG-GNDN 289 (458)
Q Consensus 222 ~~---~~~~~v~~l~~~--~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg-~~dg 289 (458)
.. .....+.++.++ +.++++... .+.|..++ .+ . ...+..+.....+++|+||++.|+.+ +.++
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-K-VTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-E-EEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-c-EEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 21 113468888885 555554432 24555555 33 2 22232333457789999999877555 4578
Q ss_pred cEEEEeCC--CC-CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-CeEEE
Q 012679 290 LLHIWDRS--MA-SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-QVCAL 365 (458)
Q Consensus 290 ~i~iwd~~--~~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-~v~~~ 365 (458)
.|.+||+. ++ .... ......+.........+++.+++..++++. .++.|..||. +++.+..+.... .+.++
T Consensus 202 ~I~~~d~~~~~Gl~~~~-~~~~~~~~~~~~~p~gi~~d~~G~lwva~~---~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGK-AEVFIDSTGIKGGMDGSVCDAEGHIWNARW---GEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp EEEEEEBCTTTCCBSSC-CEEEEECTTSSSEEEEEEECTTSCEEEEEE---TTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred EEEEEEcccccCCcccC-ceEEEECCCCCCCCCeeEECCCCCEEEEEe---CCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 99999986 33 2211 111223333345667899999775444433 4678999998 677777776654 68999
Q ss_pred EEc-CCCCeEEEEec
Q 012679 366 LWN-KNERELLSSHG 379 (458)
Q Consensus 366 ~~s-~~~~~l~~~~g 379 (458)
+|. ++++.|++++.
T Consensus 277 af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 277 AFIGPDASRLLVTSA 291 (326)
T ss_dssp EEESTTSCEEEEEEB
T ss_pred EEecCCCCEEEEEec
Confidence 998 88888876543
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=2.1e-09 Score=111.57 Aligned_cols=280 Identities=13% Similarity=0.091 Sum_probs=177.5
Q ss_pred cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCC-C----CCEEEEEEcCCCCEEEEEec------CCeEEEEeCCCceee
Q 012679 150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDE-N----GPVTSVNWAPDGRHIAIGLN------NCQVQLWDSTANRQL 218 (458)
Q Consensus 150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h-~----~~V~~v~~s~~g~~la~g~~------dg~v~iwd~~~~~~~ 218 (458)
..+.+++++.++.|+.+|..+|+. +.++..+ . ..+.+.-.. .+..+++++. +|.|+.||..+++.+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~--~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKE--VWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE--EEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCE--EeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 456788888899999999999997 4444332 1 111110001 2445666654 689999999999998
Q ss_pred EEecCCCcc-------------------------------cEEEEEe--CCCeEEEEeCCC-------------------
Q 012679 219 RTLRGGHRS-------------------------------RVGSLAW--NNHILTTGGMDG------------------- 246 (458)
Q Consensus 219 ~~~~~~~~~-------------------------------~v~~l~~--~~~~l~sg~~dg------------------- 246 (458)
..+...... ....+++ .+..++.+..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 877641111 0013444 467788777664
Q ss_pred cEEEEEccCCCeeEEEEcc-cc-------cceEeEEEcCCC---CEEEEEECCCcEEEEeCCCCCCCCccee-----eee
Q 012679 247 LIINNDVRVRDHIVETYRG-HN-------QEVCGLKWSASG---QQLASGGNDNLLHIWDRSMASSNSVTQW-----LHR 310 (458)
Q Consensus 247 ~i~vwd~~~~~~~~~~~~~-h~-------~~v~~l~~spd~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~~~ 310 (458)
.|..+|.++++..-..-.. |. ....-+....+| ..++.++.+|.|+++|..+++....... ...
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 4999999988754332221 21 112223333477 6889999999999999998875211000 000
Q ss_pred ecccccce------------------------eEEEecCCCCcEEEEeC--------------C----------------
Q 012679 311 LEEHTSAV------------------------KAIAWCPFQSNLLATGG--------------G---------------- 336 (458)
Q Consensus 311 ~~~h~~~v------------------------~~l~~~p~~~~ll~s~~--------------g---------------- 336 (458)
+......+ ..++++|+...+++... |
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 00000001 25688887665554321 0
Q ss_pred ----------CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-Cc
Q 012679 337 ----------GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-SR 405 (458)
Q Consensus 337 ----------~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-~~ 405 (458)
...+.|..||+.+++.+..+..+.++....+...+..+++ |..++.+++||..+++.+.++.... ..
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 521 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVV 521 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE--ECCCCcEEEEECCCCceeeeeeCCCCcc
Confidence 0127899999999999999887776666667778888877 4589999999999999999987433 22
Q ss_pred EEEEEEcCCCCEEE-EEeC----------------CCcEEEEecCC
Q 012679 406 VLFMAQSPDGCTVA-SAAA----------------DETLRFWNVFG 434 (458)
Q Consensus 406 V~~l~~spdg~~l~-s~s~----------------Dg~i~iW~~~~ 434 (458)
..-+.+..+|+.++ +.+. .+.+.+|.+..
T Consensus 522 ~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 522 AAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp SCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred cCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 23455667886444 3333 46888998873
No 224
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=8e-09 Score=100.67 Aligned_cols=230 Identities=8% Similarity=-0.019 Sum_probs=149.7
Q ss_pred cceeeccCC-CeEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC--eEEEEeCCCceeeE
Q 012679 144 LNLLDWGSS-NVLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQLR 219 (458)
Q Consensus 144 ~~~~~~~~~-~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~~ 219 (458)
...+.|+++ +++++.. ++.|++||..++.+..+... ..... ++|+++++.|+++..++ .|.+|+...+....
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 456777764 4555544 47999999998876444332 22234 99999999999988766 79999987665544
Q ss_pred Ee---cCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEE---Ecccccce--EeEEEcCC-CCEEEEEECC
Q 012679 220 TL---RGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVET---YRGHNQEV--CGLKWSAS-GQQLASGGND 288 (458)
Q Consensus 220 ~~---~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~~h~~~v--~~l~~spd-~~~l~sg~~d 288 (458)
.+ .......+.+++++ +..|+.+..++.|+.||..+....... ..++...- ..++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 11134556778885 356666778899999999866532210 11222222 38999995 5556666678
Q ss_pred CcEEEEeCCCCCCCCcceeeeeeccc---------------ccceeEEEecCCCCcEEEEeCCC-CCCeEEEEECCCCCe
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEH---------------TSAVKAIAWCPFQSNLLATGGGG-GDRCIKFWNTHTGAC 352 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~p~~~~ll~s~~g~-~d~~i~lwd~~~~~~ 352 (458)
+.|+.|+.... +..+.++ -.....++++|++. ++++. + .++.|+.|+..++..
T Consensus 289 ~~I~~~~~~g~--------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad--~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 289 SSVYKITPDGE--------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD--GFKGYCLRKLDILDGYV 357 (409)
T ss_dssp TEEEEECTTCC--------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE--TTTTCEEEEEETTTTEE
T ss_pred CEEEEEecCCC--------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe--CCCCCEEEEEECCCCEE
Confidence 89999987643 1111111 13467899999876 55553 2 478999999888875
Q ss_pred eEEEeC---------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 353 LNSVDT---------------GSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 353 ~~~~~~---------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
...... -.....+++++++..+++ ...++.|+.+++
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA--EAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--ESTTCEEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE--ECCCCeEEEEEe
Confidence 443332 135789999999766655 445677776654
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.20 E-value=5.6e-08 Score=88.71 Aligned_cols=247 Identities=9% Similarity=0.029 Sum_probs=159.4
Q ss_pred EEEEcCCEEEEEECCCCCee-----eEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEecCCCccc
Q 012679 155 LAIALGSTVYLWDASDGTTS-----ELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLRGGHRSR 228 (458)
Q Consensus 155 la~~~d~~v~iwd~~~~~~~-----~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~ 228 (458)
+..+..+.|+.+++...... .+.... ...+..++|++++..|.++. .++.|..++.........+.. ....
T Consensus 4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~ 80 (267)
T 1npe_A 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIP--AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGS 80 (267)
T ss_dssp EEEEEEEEEEEEEESSSCBCGGGCEEEEEEE--EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCC
T ss_pred EEEEcCCeEEEEEecCcccccccceeeecCC--CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-CCCC
Confidence 33444568999998765431 122211 23478999999766666554 567999999876654333332 2345
Q ss_pred EEEEEeC--CC-eEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC---CCcEEEEeCCCCCCC
Q 012679 229 VGSLAWN--NH-ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN---DNLLHIWDRSMASSN 302 (458)
Q Consensus 229 v~~l~~~--~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~---dg~i~iwd~~~~~~~ 302 (458)
...++++ +. ++++-...+.|.++++..... .............++++|++..|..+.. .+.|..+++.....
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~- 158 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR- 158 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-
Confidence 6777774 44 444555678899999875432 1222222245789999997666655554 36888888764322
Q ss_pred CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC
Q 012679 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ 382 (458)
Q Consensus 303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d 382 (458)
.............++++|++..++++.. ..+.|..+|.........+........++.. +..++.+ ....
T Consensus 159 -----~~~~~~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-~~~~ 228 (267)
T 1npe_A 159 -----RILAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKT 228 (267)
T ss_dssp -----EEEECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTT
T ss_pred -----EEEEECCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-ECCC
Confidence 1111122345678999998888888876 6789999999865544444444455677654 5566655 3457
Q ss_pred CcEEEEeCCCceeeEEEeCCC-CcEEEEEEcCCCC
Q 012679 383 NQLTLWKYPSMVKMAELSGHT-SRVLFMAQSPDGC 416 (458)
Q Consensus 383 ~~i~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~ 416 (458)
+.|.++|..+++.+.++.... .....+++.|++.
T Consensus 229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 899999999999888886433 2467888888875
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=7.8e-09 Score=98.26 Aligned_cols=242 Identities=10% Similarity=-0.049 Sum_probs=150.6
Q ss_pred CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe--cCCeEEEEeCCCceeeEEec------CCCcccEEEEEeCC-CeEEE
Q 012679 171 GTTSELVTVDDENGPVTSVNWAPDGRHIAIGL--NNCQVQLWDSTANRQLRTLR------GGHRSRVGSLAWNN-HILTT 241 (458)
Q Consensus 171 ~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~--~dg~v~iwd~~~~~~~~~~~------~~~~~~v~~l~~~~-~~l~s 241 (458)
++++.+..+. ..+..|+++++|+++++.. .++.++||.+.+++. ..+. ..+-..+..+++++ ..|..
T Consensus 7 g~~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 7 DRLEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp -CCEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEE
T ss_pred ceeEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEE
Confidence 4444455543 5799999999999888864 234355555545543 3221 12456889999963 34444
Q ss_pred Ee-C-----CCcEEEEEccCCCeeEEEEcc------cccceEeEEEcCCCCEE-EEEE---CCCcEEEEeCCCCCCCCcc
Q 012679 242 GG-M-----DGLIINNDVRVRDHIVETYRG------HNQEVCGLKWSASGQQL-ASGG---NDNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 242 g~-~-----dg~i~vwd~~~~~~~~~~~~~------h~~~v~~l~~spd~~~l-~sg~---~dg~i~iwd~~~~~~~~~~ 305 (458)
.. . ++.|.+||+.++.. +..+.. +...+..+++++++..+ ++.. .++.|.+||+.++..
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~---- 157 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA---- 157 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE----
T ss_pred EcCCCCcCCCCeEEEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE----
Confidence 43 3 57899999987653 333321 22356889999865554 5544 578999999876543
Q ss_pred eeeeeeccc-----------------------------ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC---CCC--
Q 012679 306 QWLHRLEEH-----------------------------TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH---TGA-- 351 (458)
Q Consensus 306 ~~~~~~~~h-----------------------------~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~---~~~-- 351 (458)
...+..| ...+..|+|+|++..++++.. ..+.|..++.. .+.
T Consensus 158 --~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~--~~~~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 158 --ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM--HSTSMYRIKSADLSNLQLT 233 (343)
T ss_dssp --EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES--SCSEEEEEEHHHHTCTTCC
T ss_pred --EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC--CCCeEEEEEHHHhcCCCCC
Confidence 1111110 123578999999877777654 34466655532 111
Q ss_pred ------eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCC
Q 012679 352 ------CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG-HTSRVLFMAQSPDGCTVASAAAD 424 (458)
Q Consensus 352 ------~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~D 424 (458)
.+...........++++++|..+++ ...++.|.+||..+++....... +...+.+++|.++|.++++.+..
T Consensus 234 ~~~~~~~~~~~g~~g~pdgia~d~~G~l~va--~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 234 DAELGSKIERYSEKPICDGISIDKDHNIYVG--DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp HHHHHTTCEEEEECCSCSCEEECTTCCEEEE--EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred hhhhhcceEecccCCCCceEEECCCCCEEEE--ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 0112222335678999999987777 44678999999855654333322 24568999999999988887755
Q ss_pred CcE
Q 012679 425 ETL 427 (458)
Q Consensus 425 g~i 427 (458)
+.+
T Consensus 312 ~~~ 314 (343)
T 2qe8_A 312 HHS 314 (343)
T ss_dssp GGS
T ss_pred ccc
Confidence 444
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.20 E-value=2e-09 Score=101.34 Aligned_cols=259 Identities=8% Similarity=0.031 Sum_probs=163.9
Q ss_pred eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCc
Q 012679 147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR 226 (458)
Q Consensus 147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~ 226 (458)
+....+..+.++.++ |+.+|. +++. +..+...........+. +..|.+++.++.|..+|.. ++....... ..
T Consensus 65 ~~~~~~g~l~v~t~~-l~~~d~-~g~~--~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-~~ 136 (330)
T 3hxj_A 65 PSIGKDGTIYFGSDK-VYAINP-DGTE--KWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKT-KK 136 (330)
T ss_dssp CEETTTTEECCSSCE-EEEECC-CGGG--GGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEEC-SS
T ss_pred eEEecCCcEEEecCc-EEEECC-CCcE--EEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC-CC
Confidence 333333333334444 888886 5543 22222222222223333 5568888889999999988 777666654 44
Q ss_pred ccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679 227 SRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 227 ~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~ 305 (458)
..+.++..+ +..+..|+.++.|..+|.. +.. ...+......+.++...+++.+++. + +.|..+| .++..
T Consensus 137 ~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~---- 206 (330)
T 3hxj_A 137 AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTE-KWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTE---- 206 (330)
T ss_dssp CCCSCCEECTTSCEEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCE----
T ss_pred ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCE-eEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcE----
Confidence 445555665 5668888888999999988 443 3344444556777888778875544 4 7899999 54443
Q ss_pred eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC-eEEEEEcCCCCeEEEEecCCCCc
Q 012679 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQ 384 (458)
Q Consensus 306 ~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~g~~d~~ 384 (458)
+.........+.+++..+++ .+++.. .++.|..+| .+++.+..+..... +..+...+++...+ +..++.
T Consensus 207 --~~~~~~~~~~~~~~~~~~~g-~l~v~t---~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v---~t~~gg 276 (330)
T 3hxj_A 207 --KWNFYAGYWTVTRPAISEDG-TIYVTS---LDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDTIYF---GSYDGH 276 (330)
T ss_dssp --EEEECCSSCCCSCCEECTTS-CEEEEE---TTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSCEEE---ECTTCE
T ss_pred --EEEEccCCcceeceEECCCC-eEEEEc---CCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCeEEE---ecCCCC
Confidence 33444445668888888764 444433 578888887 46777766655433 34455665665444 336778
Q ss_pred EEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 385 i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
|..+|. +++.+..+......+.++...++|.+. .++.+|.+++......
T Consensus 277 l~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 277 LYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLEH 325 (330)
T ss_dssp EEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC---
T ss_pred EEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEecccc
Confidence 999995 777777776556667788888888754 5889999999876543
No 228
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.19 E-value=3e-09 Score=105.75 Aligned_cols=287 Identities=13% Similarity=0.098 Sum_probs=190.4
Q ss_pred eeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEE-------------------ec-----------
Q 012679 131 RTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVT-------------------VD----------- 180 (458)
Q Consensus 131 ~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~-------------------~~----------- 180 (458)
++--+|+-.++||. +.++|..|.|+|+-+.+++.....- +.
T Consensus 4 ~~~~~~g~~d~~~~---------f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~ 74 (595)
T 1fwx_A 4 DGSVAPGQLDDYYG---------FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFL 74 (595)
T ss_dssp CCCCCTTCCCSEEE---------EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHH
T ss_pred cccCCCCCcccEEE---------EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhh
Confidence 34456777777763 4566777888888777665421110 00
Q ss_pred ---C----CCCCEEEEEEcC-----CCCEEEEEec-CCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEe
Q 012679 181 ---D----ENGPVTSVNWAP-----DGRHIAIGLN-NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGG 243 (458)
Q Consensus 181 ---~----h~~~V~~v~~s~-----~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~ 243 (458)
+ ..+.......|. ||++|.+... ++.|.+.|+.+.++.+.+..........+++ ++.++++++
T Consensus 75 ~~~g~~~~~~gd~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~ 154 (595)
T 1fwx_A 75 AANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNG 154 (595)
T ss_dssp HHTTCSSCCCCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEE
T ss_pred hccCceecccCCCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEec
Confidence 0 012233355554 8888888765 4579999999999888554323445667775 577888774
Q ss_pred ------------------CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC----------------
Q 012679 244 ------------------MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN---------------- 289 (458)
Q Consensus 244 ------------------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg---------------- 289 (458)
.++.+.+.|..+.+...+...+. ....++++|+|+++++.+.+.
T Consensus 155 ~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 155 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp CSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred ccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence 24578999998765433333222 456788999999998888543
Q ss_pred ----------------------cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679 290 ----------------------LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT 347 (458)
Q Consensus 290 ----------------------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~ 347 (458)
.|.|.|..+.... ..+..+.. .....++.++||+.++++++. .+.+|.++|+
T Consensus 233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~---~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~ 306 (595)
T 1fwx_A 233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS---LFTRYIPI-ANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDV 306 (595)
T ss_dssp EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCC---SSEEEEEE-ESSCCCEEECTTSSEEEEECT--TSSBEEEEEG
T ss_pred EEEeeccceeEeccCCCeeEECcEEEEeCcccCCc---eeEEEEec-CCCceEEEEcCCCCEEEEeCC--CCCeEEEEEC
Confidence 3556665542110 00112211 234568999999999999876 7889999999
Q ss_pred CCCC------------eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC----------ceeeEEEeCCCCc
Q 012679 348 HTGA------------CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS----------MVKMAELSGHTSR 405 (458)
Q Consensus 348 ~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~----------~~~~~~~~~h~~~ 405 (458)
.+.+ .+..+..+.....++|+++| .++++ -+-+++|.+||+.. .+.+..+..|..+
T Consensus 307 ~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t-~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 307 TRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTS-LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp GGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEE-ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred cccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEE-EecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 9753 45667778889999999999 66655 56899999999977 5667777766543
Q ss_pred E-----EEEEEcCCCCEEEEEeC---CCcE----------EEEecCCCC
Q 012679 406 V-----LFMAQSPDGCTVASAAA---DETL----------RFWNVFGAP 436 (458)
Q Consensus 406 V-----~~l~~spdg~~l~s~s~---Dg~i----------~iW~~~~~~ 436 (458)
- .++.++|||++|+++.. |..+ .++|+.+++
T Consensus 385 Gh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 385 GHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 2 12345899999998864 4332 789996544
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.19 E-value=2.8e-09 Score=110.83 Aligned_cols=267 Identities=13% Similarity=0.149 Sum_probs=165.2
Q ss_pred cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC---CCCEEEEEe------cCCeEEEEeCCCceeeEE
Q 012679 150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP---DGRHIAIGL------NNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~---~g~~la~g~------~dg~v~iwd~~~~~~~~~ 220 (458)
..+.+++++.|+.|+.+|..+|+..-......+......+..+| ++ .++++. .+|.|..||..+|+.+..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 34677888889999999999999733332210111111111222 44 455554 368999999999999887
Q ss_pred ecCCC-c-----------------------------ccEEEEEe--CCCeEEEEeCCCc-------------------EE
Q 012679 221 LRGGH-R-----------------------------SRVGSLAW--NNHILTTGGMDGL-------------------II 249 (458)
Q Consensus 221 ~~~~~-~-----------------------------~~v~~l~~--~~~~l~sg~~dg~-------------------i~ 249 (458)
+.... . .....+++ ...+++.+..++. |.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 75210 0 00113455 4578888887763 99
Q ss_pred EEEccCCCeeEEEEcc-cc-------cceEeEEEcCCCC---EEEEEECCCcEEEEeCCCCCCCCcce-----eeeeec-
Q 012679 250 NNDVRVRDHIVETYRG-HN-------QEVCGLKWSASGQ---QLASGGNDNLLHIWDRSMASSNSVTQ-----WLHRLE- 312 (458)
Q Consensus 250 vwd~~~~~~~~~~~~~-h~-------~~v~~l~~spd~~---~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~~- 312 (458)
.+|.++++..-..-.. |. .++.......+|+ .++.++.+|.++++|..+++...... +...+.
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 9999988764332221 21 1222222223565 78899999999999998887521000 000000
Q ss_pred ----------------cccc-----------ceeEEEecCCCCcEEEEeC------------------------C-----
Q 012679 313 ----------------EHTS-----------AVKAIAWCPFQSNLLATGG------------------------G----- 336 (458)
Q Consensus 313 ----------------~h~~-----------~v~~l~~~p~~~~ll~s~~------------------------g----- 336 (458)
.... .-..++++|+...+++... |
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 0000 0123678886554444210 0
Q ss_pred -------------CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC
Q 012679 337 -------------GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT 403 (458)
Q Consensus 337 -------------~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~ 403 (458)
..++.|+.||+.+|+.+..+..+..+..-.+...+..+++ |..|+.|+.||..+++.+.+++...
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFE--GSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEE--ECCCCcEEEEECCCCccceeeeCCC
Confidence 0147899999999999999887766655566777888877 5689999999999999999887543
Q ss_pred Cc-EEEEEEcCCCCEEE
Q 012679 404 SR-VLFMAQSPDGCTVA 419 (458)
Q Consensus 404 ~~-V~~l~~spdg~~l~ 419 (458)
+. ..-+.|..+|+..+
T Consensus 517 ~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 517 GVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp CCCSCCEEEEETTEEEE
T ss_pred CcccCceEEEECCEEEE
Confidence 22 23466677887443
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=1.3e-08 Score=95.08 Aligned_cols=217 Identities=12% Similarity=0.086 Sum_probs=140.5
Q ss_pred ceeeccC-CC-eEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 145 NLLDWGS-SN-VLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 145 ~~~~~~~-~~-~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
....|++ ++ ++.+. .++.|+.|+. +++.. .+..+...+..++++++|+++++...++.|.+|+.. ++.....
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~---~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~ 122 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD---VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLV 122 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE---EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE---EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEE
Confidence 4566766 34 44444 5789999998 55542 223345679999999999976665566789999976 5432221
Q ss_pred c---CCCcccEEEEEeC--CCeEEE----EeC-------------CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679 222 R---GGHRSRVGSLAWN--NHILTT----GGM-------------DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279 (458)
Q Consensus 222 ~---~~~~~~v~~l~~~--~~~l~s----g~~-------------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~ 279 (458)
. ......+..++++ +.++++ |.. .+.|..+|..++... .+. ......+++|+||+
T Consensus 123 ~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~--~~~-~~~~p~gl~~spdg 199 (305)
T 3dr2_A 123 GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ--RMA-DLDHPNGLAFSPDE 199 (305)
T ss_dssp CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE--EEE-EESSEEEEEECTTS
T ss_pred eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE--EEe-cCCCCcceEEcCCC
Confidence 1 1111345667774 666665 332 256777777555421 222 34557889999999
Q ss_pred CEEEEEECC------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679 280 QQLASGGND------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353 (458)
Q Consensus 280 ~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~ 353 (458)
+.|+.+... +.|.+||+..... ... .............+++.+++. +.++. .+ .|.+||. .++.+
T Consensus 200 ~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~--~~~~~~~~~~pdgi~~d~~G~-lwv~~---~~-gv~~~~~-~g~~~ 270 (305)
T 3dr2_A 200 QTLYVSQTPEQGHGSVEITAFAWRDGAL-HDR--RHFASVPDGLPDGFCVDRGGW-LWSSS---GT-GVCVFDS-DGQLL 270 (305)
T ss_dssp SEEEEEECCC---CCCEEEEEEEETTEE-EEE--EEEECCSSSCCCSEEECTTSC-EEECC---SS-EEEEECT-TSCEE
T ss_pred CEEEEEecCCcCCCCCEEEEEEecCCCc-cCC--eEEEECCCCCCCeEEECCCCC-EEEec---CC-cEEEECC-CCCEE
Confidence 988777665 7899999865431 000 011111234456789999766 54432 33 4999998 68888
Q ss_pred EEEeCCCCeEEEEEcCCCCeEEEEe
Q 012679 354 NSVDTGSQVCALLWNKNERELLSSH 378 (458)
Q Consensus 354 ~~~~~~~~v~~~~~s~~~~~l~~~~ 378 (458)
..+.....+.+++|.++++.|++++
T Consensus 271 ~~~~~~~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 271 GHIPTPGTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp EEEECSSCCCEEEECTTSCEEEEEE
T ss_pred EEEECCCceeEEEEeCCCCEEEEEc
Confidence 8887777789999999998888864
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=3.1e-11 Score=116.15 Aligned_cols=258 Identities=14% Similarity=0.060 Sum_probs=140.9
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEE
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVG 230 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 230 (458)
.+.+++++.|+.|+.||..+|+. +.++.. +.+.+..+..++..+++++.||.|+.||..+++.+..+.......+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~--~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSI--KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCE--EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred CCEEEEEcCCCEEEEEECCCCCE--EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 46788888999999999999987 445544 44555556677878888889999999999999887766531111110
Q ss_pred -EEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679 231 -SLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL 308 (458)
Q Consensus 231 -~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 308 (458)
+... .+..+++|+.++.|+.||.++++.. ..+..+. ...++|++..+++++.|+.|+.||..+++..
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~-w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~------ 153 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQ-QTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR------ 153 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC------
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEE-EEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE------
Confidence 1111 4567788889999999999987653 3333332 2345678889999999999999999888752
Q ss_pred eeecccccceeEEEecCCC---CcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEE-EEEcCCCCeEEEEecCCCCc
Q 012679 309 HRLEEHTSAVKAIAWCPFQ---SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA-LLWNKNERELLSSHGFTQNQ 384 (458)
Q Consensus 309 ~~~~~h~~~v~~l~~~p~~---~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~g~~d~~ 384 (458)
..+..+. ....++.++. ..+++. + .|+.|+.||..+|+.+.......++.. ..+++++...+......++.
T Consensus 154 W~~~~~~--~~~~~~~~~~~~~~~v~~~-~--~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~ 228 (369)
T 2hz6_A 154 WNATYFD--YAASLPEDDVDYKMSHFVS-N--GDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVET 228 (369)
T ss_dssp CEEEEEE--ECCBCCCCCTTCCCCEEEE-E--TSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHH
T ss_pred EeEeccc--ccCccccCCccccceEEEE-C--CCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeecccc
Confidence 2221111 1223333322 445543 3 799999999999999998887777654 33444543221000001234
Q ss_pred EEEEeCCCce----eeEEEeCCCCcEEEEEEcC--CCCEEEEEeCCCcEEEEecC
Q 012679 385 LTLWKYPSMV----KMAELSGHTSRVLFMAQSP--DGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 385 i~iwd~~~~~----~~~~~~~h~~~V~~l~~sp--dg~~l~s~s~Dg~i~iW~~~ 433 (458)
++.+|..+++ .+..+... ..+. +| .+..|+.++.||.|+.++..
T Consensus 229 l~~ld~~tG~~~~~~~W~~~~~-~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 229 LRYLTFMSGEVGRITKWKYPFP-KETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHHHTSCCCCC-CHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred eeeeehhcCCcccceeeeeccC-cccc----ccccccceEEEecccCCEEecCcc
Confidence 5555555554 33322211 1111 22 23467778888988888876
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.17 E-value=4.5e-08 Score=94.12 Aligned_cols=252 Identities=14% Similarity=0.164 Sum_probs=159.4
Q ss_pred EEEEEECCC-----CCeeeEEEecCCCCCEEEEEE-----------c--CCCCEEEE-EecCCeEEEEeCCCc----eee
Q 012679 162 TVYLWDASD-----GTTSELVTVDDENGPVTSVNW-----------A--PDGRHIAI-GLNNCQVQLWDSTAN----RQL 218 (458)
Q Consensus 162 ~v~iwd~~~-----~~~~~~~~~~~h~~~V~~v~~-----------s--~~g~~la~-g~~dg~v~iwd~~~~----~~~ 218 (458)
.|.+.|++. +++.....+..-.+....+.| + +++++|++ |..++.|.|+|+.+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 566667665 566444455443445556666 6 78888766 456778999999766 666
Q ss_pred EEec------CCCcccEEEEEe--CCCeEEEEeCC------CcEEEEEccCCCeeEEEEccc--c-cceEeEEEcCCCCE
Q 012679 219 RTLR------GGHRSRVGSLAW--NNHILTTGGMD------GLIINNDVRVRDHIVETYRGH--N-QEVCGLKWSASGQQ 281 (458)
Q Consensus 219 ~~~~------~~~~~~v~~l~~--~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~h--~-~~v~~l~~spd~~~ 281 (458)
+++. ......-..+.. ++ +++++..+ |.|.++|..+.+. +..+... . .--..+.|+|+++.
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~ 201 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEV 201 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTE
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE-EEEEccCCCCccccceEEECCCCCE
Confidence 6662 001112233333 45 66665554 7899999987764 4555421 1 22345888999998
Q ss_pred EEEEE-------------------CCCcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEe--cCCCCcEEEEeC---
Q 012679 282 LASGG-------------------NDNLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAW--CPFQSNLLATGG--- 335 (458)
Q Consensus 282 l~sg~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~p~~~~ll~s~~--- 335 (458)
+++.. .+.+|.+||+.+.+. +.++... ......+.| +|++...++++.
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~------~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~ 275 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR------IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL 275 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE------EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE------eeEEecCCCCCccceeEeeECCCCCEEEEEEeeec
Confidence 88874 368999999987543 4444331 123344544 998887777641
Q ss_pred CCCCCeEEEEECCCCCe--eEEE--eC-----------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC---
Q 012679 336 GGGDRCIKFWNTHTGAC--LNSV--DT-----------------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP--- 391 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~~--~~~~--~~-----------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~--- 391 (458)
-..+++|.+|....++. .+.+ .. +.....+.+++++++|+++.- ..+.|.+||+.
T Consensus 276 ~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr-g~d~VavfdV~d~~ 354 (462)
T 2ece_A 276 KDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW-GIGEVRQYDISNPF 354 (462)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-TTTEEEEEECSSTT
T ss_pred cCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC-CCCEEEEEEecCCC
Confidence 00345777666554431 1111 11 245788999999999999854 56899999985
Q ss_pred CceeeEEEeCCC--------------CcEEEEEEcCCCCEEEEEe
Q 012679 392 SMVKMAELSGHT--------------SRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 392 ~~~~~~~~~~h~--------------~~V~~l~~spdg~~l~s~s 422 (458)
+.+.+..+.... +....++++|||++|+++.
T Consensus 355 ~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 355 KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 345555553220 1357899999999999887
No 233
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=2.8e-08 Score=103.05 Aligned_cols=282 Identities=11% Similarity=0.072 Sum_probs=179.3
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCC----------E-EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGP----------V-TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~----------V-~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
.+.+++++.++.|+.+|..+|+. +.++...... + ..+++ ++..+++++.||.|..+|..+|+.+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKE--LWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChh--ceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 36677888899999999999987 5554322110 0 11222 35678889999999999999999988
Q ss_pred EecCCCc---ccEE-EEEeCCCeEEEEeC------CCcEEEEEccCCCeeEEEEcc--c---------------------
Q 012679 220 TLRGGHR---SRVG-SLAWNNHILTTGGM------DGLIINNDVRVRDHIVETYRG--H--------------------- 266 (458)
Q Consensus 220 ~~~~~~~---~~v~-~l~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~--h--------------------- 266 (458)
.+..... ..+. .....+..++.+.. +|.|..+|.++++..-..... .
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred eeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 8764211 1111 11122445555543 589999999988764333210 0
Q ss_pred -------ccceEeEEEcCCCCEEEEEECCCc-------------------EEEEeCCCCCCCCcceeeeeecccc-----
Q 012679 267 -------NQEVCGLKWSASGQQLASGGNDNL-------------------LHIWDRSMASSNSVTQWLHRLEEHT----- 315 (458)
Q Consensus 267 -------~~~v~~l~~spd~~~l~sg~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~h~----- 315 (458)
......+++.|+..+++.++.++. |..+|..+++. .+......|.
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~----~W~~~~~~~~~wd~~ 297 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL----AWHYQVTPGDSWDFT 297 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE----EEEEESSTTCCSCCC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce----eeEeecCCCcccccc
Confidence 011234788888888888877663 89999988875 2223322232
Q ss_pred --cceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-------------C-----------------
Q 012679 316 --SAVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-------------Q----------------- 361 (458)
Q Consensus 316 --~~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-------------~----------------- 361 (458)
.+.....+..++. .+++.++ .+|.++++|..+|+.+....... +
T Consensus 298 ~~~~~~~~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 298 ATQQITLAELNIDGKPRKVLMQAP--KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred CCCCcEEEEeccCCcEEEEEEEEC--CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence 1222122222333 2466655 89999999999999885443211 0
Q ss_pred -------eEEEEEcCCCCeEEEEe----------------------c------------CCCCcEEEEeCCCceeeEEEe
Q 012679 362 -------VCALLWNKNERELLSSH----------------------G------------FTQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 362 -------v~~~~~s~~~~~l~~~~----------------------g------------~~d~~i~iwd~~~~~~~~~~~ 400 (458)
-..++++|+...+++.. | ..+|.|..||..+++.+.+..
T Consensus 376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~ 455 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP 455 (668)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence 11256777766665421 1 123789999999999988776
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679 401 GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA 443 (458)
Q Consensus 401 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~ 443 (458)
.+. .+....+...+.+++.++.||.|+.||..+++.+.+...
T Consensus 456 ~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 456 YPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp ESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 433 233334444677899999999999999999988776543
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.11 E-value=6.6e-11 Score=113.86 Aligned_cols=203 Identities=13% Similarity=0.014 Sum_probs=113.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEE--eCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc-ce
Q 012679 194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLA--WNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ-EV 270 (458)
Q Consensus 194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~-~v 270 (458)
++..+++++.||.|+.||..+|+.+..+.. ..+.+.. .++..+++++.||.|+.||..+++.. ..+..+.. .+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~-w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL-TKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCS-EECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee-eeeeccCcccc
Confidence 578899999999999999999999988874 2333222 24667888889999999999877642 22222211 11
Q ss_pred Ee-EEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 271 CG-LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 271 ~~-l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
.+ ..+. ++..+++|+.|+.|+.||..+++. +..+..+. ...++|++..+++ ++ .|+.|+.||..+
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~------~w~~~~~~----~~~~~p~~~~v~~-~~--~dg~v~a~d~~t 149 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEK------QQTLSSAF----ADSLSPSTSLLYL-GR--TEYTITMYDTKT 149 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------------EEE-EE--EEEEEECCCSSS
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcE------EEEecCCC----cccccccCCEEEE-Ee--cCCEEEEEECCC
Confidence 11 1111 455778888899999999998876 33433332 2345665554544 43 789999999999
Q ss_pred CCeeEEEeCCCCeEEEEEcCCC---CeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCE
Q 012679 350 GACLNSVDTGSQVCALLWNKNE---RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417 (458)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~ 417 (458)
|+.+..+.... .....+..+. ..+++ +..+|.|..||..+++.+.++......+....++++|..
T Consensus 150 G~~~W~~~~~~-~~~~~~~~~~~~~~~v~~--~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 150 RELRWNATYFD-YAASLPEDDVDYKMSHFV--SNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp SSCCCEEEEEE-ECCBCCCCCTTCCCCEEE--EETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred CCEEEeEeccc-ccCccccCCccccceEEE--ECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 99876654321 1222233321 44555 347899999999999998887643333333455666643
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=2e-09 Score=101.22 Aligned_cols=257 Identities=13% Similarity=0.082 Sum_probs=166.7
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEE
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVG 230 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 230 (458)
.+.+++++.++.|+.|| .+++. +.....+...+.++...++|. |.+++.+ |..+|. +++.+..+.. ......
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~--~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~-~~~~~~ 101 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSV--KWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT-KKAIVS 101 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCE--EESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC------C
T ss_pred CCeEEEEcCCCEEEEEC-CCCcE--EEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC-CCCccc
Confidence 35677777788999999 88876 443333344467777777775 5555555 888886 6665544432 222222
Q ss_pred EEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee
Q 012679 231 SLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 231 ~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 310 (458)
.....+..|..++.++.|..+|.. +.. ......+...+.++...+++. +..++.++.|..+|.. +.. +..
T Consensus 102 ~~~~~~~~l~v~t~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~------~~~ 171 (330)
T 3hxj_A 102 DFTIFEDILYVTSMDGHLYAINTD-GTE-KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE------KWR 171 (330)
T ss_dssp CEEEETTEEEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE------EEE
T ss_pred CceEECCEEEEEecCCEEEEEcCC-CCE-EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE------eEE
Confidence 233337778889999999999987 543 334444455566777777776 5567788999999987 443 333
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
+......+.++...+++. +++. . +.|..+| .+++.+...... ..+.++...+++...+.+ .++.|..++
T Consensus 172 ~~~~~~~~~~~~~d~~g~-l~v~----t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t---~~~gl~~~~ 241 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGT-IYFG----S-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTS---LDGHLYAIN 241 (330)
T ss_dssp EECSSCCCSCCEECTTCC-EEEE----S-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEE---TTTEEEEEC
T ss_pred EecCCCceeeeEEcCCCE-EEEE----e-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEc---CCCeEEEEC
Confidence 434455677777766544 4442 2 7899999 788877766543 457788888887666542 467888887
Q ss_pred CCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 390 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
.+++.+..+......+..+.+.++|. |..++.+|.|..+|. .+...
T Consensus 242 -~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 242 -PDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -TTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEE
T ss_pred -CCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEE
Confidence 46666666655544455566666665 556778888988885 44433
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=4.9e-08 Score=97.12 Aligned_cols=234 Identities=9% Similarity=0.003 Sum_probs=161.1
Q ss_pred eEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEE-c-CCCCEEEEEe------------------cCCeEEEEeC
Q 012679 154 VLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNW-A-PDGRHIAIGL------------------NNCQVQLWDS 212 (458)
Q Consensus 154 ~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~-s-~~g~~la~g~------------------~dg~v~iwd~ 212 (458)
++.... ++.|.+.|+.+.++..+.++.. ...+..+++ + |+++++++++ .++.+.++|.
T Consensus 104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~ 182 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 182 (595)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred EEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence 344333 5679999999998866667654 345889998 5 9999999885 3457999999
Q ss_pred CCceeeEEecCCCcccEEEEEeCCCeEEEEeCCC--------------------------------------cEEEEEcc
Q 012679 213 TANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG--------------------------------------LIINNDVR 254 (458)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg--------------------------------------~i~vwd~~ 254 (458)
++.+.+.++..+..-.-..+..+++++++.+.+. .|.+.|.+
T Consensus 183 ~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~ 262 (595)
T 1fwx_A 183 DKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGR 262 (595)
T ss_dssp TTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECS
T ss_pred CCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCc
Confidence 9999888877422333334445677777766443 46677776
Q ss_pred C--CCeeEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCC------CCCcceeeeeecccccceeEEEecC
Q 012679 255 V--RDHIVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMAS------SNSVTQWLHRLEEHTSAVKAIAWCP 325 (458)
Q Consensus 255 ~--~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~------~~~~~~~~~~~~~h~~~v~~l~~~p 325 (458)
+ +...+..+.. .....++.++|||+++++++ .+++|.++|+.+.. ............ -......++|+|
T Consensus 263 ~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~ 340 (595)
T 1fwx_A 263 KEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG 340 (595)
T ss_dssp GGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT
T ss_pred ccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC
Confidence 5 3221223322 23567899999999887665 58899999988542 100011122222 234567899999
Q ss_pred CCCcEEEEeCCCCCCeEEEEECCC----------CCeeEEEeCCCCeEEEE------EcCCCCeEEEEecCCCCcE----
Q 012679 326 FQSNLLATGGGGGDRCIKFWNTHT----------GACLNSVDTGSQVCALL------WNKNERELLSSHGFTQNQL---- 385 (458)
Q Consensus 326 ~~~~ll~s~~g~~d~~i~lwd~~~----------~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~g~~d~~i---- 385 (458)
+| +++++.. .|+.|..||+.+ .+.+.+++.+.+.-... .+|+|++|+++..+....+
T Consensus 341 dG-~aY~t~~--ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~g 417 (595)
T 1fwx_A 341 RG-NAYTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVG 417 (595)
T ss_dssp TS-EEEEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCC
T ss_pred CC-eEEEEEe--cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCC
Confidence 98 7777776 899999999987 66788888877764343 4799999999988775555
Q ss_pred -------EEEeCCCc
Q 012679 386 -------TLWKYPSM 393 (458)
Q Consensus 386 -------~iwd~~~~ 393 (458)
.++|+..+
T Consensus 418 p~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 418 PLKPENDQLIDISGD 432 (595)
T ss_dssp SSCCEEEEEEECSSS
T ss_pred CCCCCcceEEEcCCC
Confidence 88998543
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=1.5e-07 Score=85.03 Aligned_cols=193 Identities=10% Similarity=0.097 Sum_probs=135.7
Q ss_pred CEEEEEEcCCCCEEEEEec---CCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEE-EeCCCcEEEEEccCCCeeE
Q 012679 185 PVTSVNWAPDGRHIAIGLN---NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTT-GGMDGLIINNDVRVRDHIV 260 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s-g~~dg~i~vwd~~~~~~~~ 260 (458)
....+.|++++ .|.+++. ++.|.++|+.+++.+..+..+.......++++++.|+. .-.++.+.++|..+.+. +
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v-~ 99 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN-I 99 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE-E
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE-E
Confidence 46899999986 4555442 57999999999999998764233334467776655554 45678999999987664 4
Q ss_pred EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--cc---cceeEEEecCCCCcEEEEeC
Q 012679 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HT---SAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~p~~~~ll~s~~ 335 (458)
..+...... ...+++||+.++++..++.|.++|..+.+. +..+.- +. ..+..+.|. ++ .+++...
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v------~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~ 169 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKL------IKKHNVKYNGHRVIRLNELEYI-NG-EVWANIW 169 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCE------EEEEECEETTEECCCEEEEEEE-TT-EEEEEET
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcE------EEEEEECCCCcccccceeEEEE-CC-EEEEecC
Confidence 445322122 233556888777777789999999887665 333321 11 135677887 44 6777664
Q ss_pred CCCCCeEEEEECCCCCeeEEEeCC--------------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 336 GGGDRCIKFWNTHTGACLNSVDTG--------------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
.++.|.+.|..+++.+..++.. ...+.++|+|+++.++++.+ ..+.+.+.++..
T Consensus 170 --~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk-~~~~v~~i~l~~ 237 (266)
T 2iwa_A 170 --QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK-LWPKLFEIKLHL 237 (266)
T ss_dssp --TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET-TCSEEEEEEEEE
T ss_pred --CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC-CCCeEEEEEEec
Confidence 6789999999999999999763 35689999999999888744 567777777644
No 238
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.06 E-value=6.7e-08 Score=98.20 Aligned_cols=281 Identities=10% Similarity=0.047 Sum_probs=174.7
Q ss_pred CCeEEEEc-CCEEEEEEC-CCCCeeeEEEecCCCC-C---------E-EEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 152 SNVLAIAL-GSTVYLWDA-SDGTTSELVTVDDENG-P---------V-TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 152 ~~~la~~~-d~~v~iwd~-~~~~~~~~~~~~~h~~-~---------V-~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
+.+++++. ++.|+-+|. .+|+. +.+...... . + ..++. ++..+++++.|+.|..+|..+++.+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKI--VWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSE--EEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccE--EEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 55666666 789999999 89987 444332111 0 0 11222 3567888999999999999999998
Q ss_pred EEecCCC-c--ccEE-EEEeCCCeEEEEeC------CCcEEEEEccCCCeeEEEEccccc--------------------
Q 012679 219 RTLRGGH-R--SRVG-SLAWNNHILTTGGM------DGLIINNDVRVRDHIVETYRGHNQ-------------------- 268 (458)
Q Consensus 219 ~~~~~~~-~--~~v~-~l~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~h~~-------------------- 268 (458)
....... . ..+. .....+..++.++. +|.|..+|.++++..-+.......
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 8765321 0 0111 11112455666655 799999999988764332221100
Q ss_pred -----------------ceEeEEEcCCCCEEEEEECC----------------CcEEEEeCCCCCCCCcceeeeeecccc
Q 012679 269 -----------------EVCGLKWSASGQQLASGGND----------------NLLHIWDRSMASSNSVTQWLHRLEEHT 315 (458)
Q Consensus 269 -----------------~v~~l~~spd~~~l~sg~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~~h~ 315 (458)
....+++.++...+..++.+ +.|..+|..+++. .+......|.
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~----~W~~~~~~~d 294 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA----KWGYQKTPHD 294 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE----EEEEESSTTC
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE----EEEecCCCCc
Confidence 00235666766677666532 2589999988765 2223332221
Q ss_pred --------cceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC--------------e---------
Q 012679 316 --------SAVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ--------------V--------- 362 (458)
Q Consensus 316 --------~~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~--------------v--------- 362 (458)
.++. +...+++. .+++.++ .+|.++++|..+|+.+..+..... +
T Consensus 295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp SSCCCCCCCCEE-EEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred ccccccCCCCEE-EecccCCcEEEEEEEeC--CCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCC
Confidence 1211 12223443 4556655 899999999999999887654321 1
Q ss_pred -----------------EEEEEcCCCCeEEEEec-----------------------------------CCCCcEEEEeC
Q 012679 363 -----------------CALLWNKNERELLSSHG-----------------------------------FTQNQLTLWKY 390 (458)
Q Consensus 363 -----------------~~~~~s~~~~~l~~~~g-----------------------------------~~d~~i~iwd~ 390 (458)
..++++|+...+++.+. ..++.|..||.
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 23567887777766431 13578999999
Q ss_pred CCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 391 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
.+++.+.++... ..+....+...+..++.++.||.|+.||..+++.+.+....
T Consensus 452 ~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 452 TTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp TTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 999988877532 22222222334567777999999999999999888765443
No 239
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.04 E-value=1.2e-08 Score=106.56 Aligned_cols=203 Identities=10% Similarity=0.071 Sum_probs=134.7
Q ss_pred CcccEEEEEe--CCCeEEEE-----eCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCc-------
Q 012679 225 HRSRVGSLAW--NNHILTTG-----GMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNL------- 290 (458)
Q Consensus 225 ~~~~v~~l~~--~~~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~------- 290 (458)
+...+..++| ++++|+.+ +....|+++|+.+++.....+.. .....++|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4456777788 46766643 22357999999988753332221 123578999 9999999988743
Q ss_pred ------EEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeC-CCCCCeEEEEECCCCC-eeEEEeCC-C
Q 012679 291 ------LHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGG-GGGDRCIKFWNTHTGA-CLNSVDTG-S 360 (458)
Q Consensus 291 ------i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~-g~~d~~i~lwd~~~~~-~~~~~~~~-~ 360 (458)
|++|++.+.... ...+..... |...+..+.|+|++..++++.. +..+..|+++|+.++. ....+... .
T Consensus 204 ~~~~~~v~~~~lgt~~~~--~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQED--DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp -CCCCEEEEEETTSCGGG--CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cCCCcEEEEEECCCCccc--ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 999998776431 112333333 4455778999999998877653 2344689999998764 33444333 3
Q ss_pred CeEEEEEcCCCCeEEEEecCC--CCcEEEEeCCCcee--eEEEeCCCCcEEEEEEcCCCCEEEEEeCCC---cEEEEecC
Q 012679 361 QVCALLWNKNERELLSSHGFT--QNQLTLWKYPSMVK--MAELSGHTSRVLFMAQSPDGCTVASAAADE---TLRFWNVF 433 (458)
Q Consensus 361 ~v~~~~~s~~~~~l~~~~g~~--d~~i~iwd~~~~~~--~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg---~i~iW~~~ 433 (458)
..... |++++..++..+... .+.|.++++.++.. ...+..|...+. .|+++++.|+....++ .|++|++.
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 33333 777777777654322 46899999987654 345667776665 8999999887776544 68899887
Q ss_pred CC
Q 012679 434 GA 435 (458)
Q Consensus 434 ~~ 435 (458)
++
T Consensus 359 g~ 360 (693)
T 3iuj_A 359 GK 360 (693)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 240
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.04 E-value=1.5e-08 Score=96.71 Aligned_cols=226 Identities=9% Similarity=-0.074 Sum_probs=140.7
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEe----------CCCcEEEEEccCCCeeEEEEccc-------
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG----------MDGLIINNDVRVRDHIVETYRGH------- 266 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~h------- 266 (458)
.|.++|..+++.+.++..+.. + .+.+ +++.++++. .++.|.+||+.+.+. +..+...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCcccccc
Confidence 889999999999999987444 3 4555 677777775 478899999998875 4444322
Q ss_pred ccceEeEEEcCCCCEEEEEEC--CCcEEE--EeCCCCCCCCcceeeeeecccccceeEEEec------------------
Q 012679 267 NQEVCGLKWSASGQQLASGGN--DNLLHI--WDRSMASSNSVTQWLHRLEEHTSAVKAIAWC------------------ 324 (458)
Q Consensus 267 ~~~v~~l~~spd~~~l~sg~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------ 324 (458)
......+.++|||++++++.. ++.|.+ +|..+...............+. -.-++++
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~--~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA--ATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEET--TEEECCCCTTSCEEEECCSSCCCCE
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCC--eEEEEEcCCCCEEEEECccccccCC
Confidence 124568999999999998875 467888 9986510000000000000000 0001122
Q ss_pred -------------------CCCCcEEEEeCCCCCCeEEEEECCCCC--eeEEEeCC-----------CCeEEEEEcCCCC
Q 012679 325 -------------------PFQSNLLATGGGGGDRCIKFWNTHTGA--CLNSVDTG-----------SQVCALLWNKNER 372 (458)
Q Consensus 325 -------------------p~~~~ll~s~~g~~d~~i~lwd~~~~~--~~~~~~~~-----------~~v~~~~~s~~~~ 372 (458)
+++..++++. . +.+.+.|..++. .+..+... .....+.++++++
T Consensus 201 ~v~~~~t~~i~vg~~P~~~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 201 IVGAQCTGAQNCSSQAAQANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred eEEEEeeeeeeCCCCccccccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence 2222222221 2 556666665432 22222111 1111268999999
Q ss_pred eEEEEec-C-C-----CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCCcccccC
Q 012679 373 ELLSSHG-F-T-----QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAA-ADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 373 ~l~~~~g-~-~-----d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~i~iW~~~~~~~~~~~~ 442 (458)
.++++.. . . .+.+.++|..+.+.+..+.... ...+|+|+|||+ .+++.. .++.|.++|+.+.+.+....
T Consensus 277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 9987643 2 1 2356699999999988876443 578999999998 566666 59999999999888775543
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.00 E-value=2e-07 Score=89.63 Aligned_cols=217 Identities=13% Similarity=0.102 Sum_probs=143.3
Q ss_pred eEEEE-cCCEEEEEECCCC--CeeeEEEec------C-CCCCEEEEEEcCCCCEEEEEecC------CeEEEEeCCCcee
Q 012679 154 VLAIA-LGSTVYLWDASDG--TTSELVTVD------D-ENGPVTSVNWAPDGRHIAIGLNN------CQVQLWDSTANRQ 217 (458)
Q Consensus 154 ~la~~-~d~~v~iwd~~~~--~~~~~~~~~------~-h~~~V~~v~~s~~g~~la~g~~d------g~v~iwd~~~~~~ 217 (458)
+++.+ .++.|+++|+.+. +......++ . ....-..+..+|+| +++++..+ |.|.++|.++.+.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 44434 3678999998744 322233331 0 11245667889999 66666555 7899999999999
Q ss_pred eEEecCC-Cccc-EEEEEe--CCCeEEEEe-------------------CCCcEEEEEccCCCeeEEEEcc--cccceEe
Q 012679 218 LRTLRGG-HRSR-VGSLAW--NNHILTTGG-------------------MDGLIINNDVRVRDHIVETYRG--HNQEVCG 272 (458)
Q Consensus 218 ~~~~~~~-~~~~-v~~l~~--~~~~l~sg~-------------------~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~ 272 (458)
+.++..+ .... -..+.| +++.+++.. ....|.+||+.+++ .+.++.- .......
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P~~ 255 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGEENRMALE 255 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCTTEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCCCCCccce
Confidence 9988742 2211 223555 467777774 36899999998754 4555543 1233445
Q ss_pred EEE--cCCCCEEEEEE------CCCcEEEEeCCCCCCCCcceeeee--ecc----------------cccceeEEEecCC
Q 012679 273 LKW--SASGQQLASGG------NDNLLHIWDRSMASSNSVTQWLHR--LEE----------------HTSAVKAIAWCPF 326 (458)
Q Consensus 273 l~~--spd~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~--~~~----------------h~~~v~~l~~~p~ 326 (458)
+.| +|+++++.+++ .+++|.+|....+.. ...+. +.. -......|.++|+
T Consensus 256 i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 256 LRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred eEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----eEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 656 99999987776 466888776654221 11111 010 0235688999999
Q ss_pred CCcEEEEeCCCCCCeEEEEECCC---CCeeEEEeCCC---------------CeEEEEEcCCCCeEEEEe
Q 012679 327 QSNLLATGGGGGDRCIKFWNTHT---GACLNSVDTGS---------------QVCALLWNKNERELLSSH 378 (458)
Q Consensus 327 ~~~ll~s~~g~~d~~i~lwd~~~---~~~~~~~~~~~---------------~v~~~~~s~~~~~l~~~~ 378 (458)
++.|+++.- ..+.|.++|+.. .+.+..+..++ ....+.++|+|++|+++.
T Consensus 332 GrfLYVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999886 668999999863 35666666652 258899999999999975
No 242
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.99 E-value=2.4e-07 Score=94.15 Aligned_cols=282 Identities=9% Similarity=0.021 Sum_probs=173.4
Q ss_pred CCeEEEEc-CCEEEEEEC-CCCCeeeEEEecCCCC-----------CEEEEEEcCCCCE----EEEEecCCeEEEEeCCC
Q 012679 152 SNVLAIAL-GSTVYLWDA-SDGTTSELVTVDDENG-----------PVTSVNWAPDGRH----IAIGLNNCQVQLWDSTA 214 (458)
Q Consensus 152 ~~~la~~~-d~~v~iwd~-~~~~~~~~~~~~~h~~-----------~V~~v~~s~~g~~----la~g~~dg~v~iwd~~~ 214 (458)
+.+++++. ++.|+-+|. .+|+. +.+...... ....++++|.+.. |++++.|+.|..+|..+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~--lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTI--LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSE--EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcE--EEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 55666666 789999999 89987 444432211 0123455443444 88899999999999999
Q ss_pred ceeeEEecCCCc---ccEE-EEEeCCCeEEEEe------CCCcEEEEEccCCCeeEEEEccccc----------------
Q 012679 215 NRQLRTLRGGHR---SRVG-SLAWNNHILTTGG------MDGLIINNDVRVRDHIVETYRGHNQ---------------- 268 (458)
Q Consensus 215 ~~~~~~~~~~~~---~~v~-~l~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~h~~---------------- 268 (458)
|+.+........ ..+. .-...+..+++++ .+|.|+.+|.++++..-+.......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 220 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence 999877653110 0111 1111234555555 3899999999988764333221110
Q ss_pred --------------------ce-EeEEEcCCCCEEEEEECC----------------CcEEEEeCCCCCCCCcceeeeee
Q 012679 269 --------------------EV-CGLKWSASGQQLASGGND----------------NLLHIWDRSMASSNSVTQWLHRL 311 (458)
Q Consensus 269 --------------------~v-~~l~~spd~~~l~sg~~d----------------g~i~iwd~~~~~~~~~~~~~~~~ 311 (458)
.+ ..+++.++..++..+..+ +.|.-+|..+++. .+..+.
T Consensus 221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~----~W~~q~ 296 (599)
T 1w6s_A 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA----KFGYQK 296 (599)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE----EEEEES
T ss_pred cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce----eeEeec
Confidence 00 134566777778777665 3789999988765 233333
Q ss_pred cccc--------cceeEEEec-CCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC-------------------
Q 012679 312 EEHT--------SAVKAIAWC-PFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ------------------- 361 (458)
Q Consensus 312 ~~h~--------~~v~~l~~~-p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~------------------- 361 (458)
..|. .++. +... .++. .+++.++ .+|.++++|..+|+.+........
T Consensus 297 ~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred CCCccccccCCCccEE-EeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccc
Confidence 3332 1121 1221 3343 4566555 899999999999998877653210
Q ss_pred ---------------------eEEEEEcCCCCeEEEEe-------------------------------cC------CCC
Q 012679 362 ---------------------VCALLWNKNERELLSSH-------------------------------GF------TQN 383 (458)
Q Consensus 362 ---------------------v~~~~~s~~~~~l~~~~-------------------------------g~------~d~ 383 (458)
-..++++|+...+++.. .. ..|
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 12356677666555421 01 347
Q ss_pred cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679 384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA 443 (458)
Q Consensus 384 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~ 443 (458)
.|..||+.+++.+.+.... .++..-.+...+..++.++.||.|+.||..+++.+.+...
T Consensus 454 ~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 8999999999988776421 1111111222566788899999999999999998877643
No 243
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.97 E-value=7.8e-08 Score=91.31 Aligned_cols=192 Identities=12% Similarity=0.038 Sum_probs=124.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEec-----CCeEEEEeCCCceeeEEecCC-----CcccEEEEEeC--CCe-EEEEe---CC
Q 012679 182 ENGPVTSVNWAPDGRHIAIGLN-----NCQVQLWDSTANRQLRTLRGG-----HRSRVGSLAWN--NHI-LTTGG---MD 245 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~g~~-----dg~v~iwd~~~~~~~~~~~~~-----~~~~v~~l~~~--~~~-l~sg~---~d 245 (458)
+...+..|+++++|+++++-.. ++.|.+||+.+++.+..+... +...+..++++ +.. +++.. .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 4568999999999886665544 578999999999877766531 22346778885 334 45544 67
Q ss_pred CcEEEEEccCCCeeEEEEcccc-----------------------------cceEeEEEcCCCCEEEEEECCC-cEEEEe
Q 012679 246 GLIINNDVRVRDHIVETYRGHN-----------------------------QEVCGLKWSASGQQLASGGNDN-LLHIWD 295 (458)
Q Consensus 246 g~i~vwd~~~~~~~~~~~~~h~-----------------------------~~v~~l~~spd~~~l~sg~~dg-~i~iwd 295 (458)
+.|.+||+.++.. ...+.+|. ..+.+++|+||++.|+.+..++ .|..++
T Consensus 145 ~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 145 AALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp CEEEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CeEEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 8999999976542 33332211 2368899999999998887766 455554
Q ss_pred CC---CCCCCCcceeee--eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEEc
Q 012679 296 RS---MASSNSVTQWLH--RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLWN 368 (458)
Q Consensus 296 ~~---~~~~~~~~~~~~--~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s 368 (458)
.. ..... ..+... ...++......+++++++ .++++.. .++.|.+||..+++....... ...+..+++.
T Consensus 224 ~~~~~~~~~~-~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~--~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 224 SADLSNLQLT-DAELGSKIERYSEKPICDGISIDKDH-NIYVGDL--AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp HHHHTCTTCC-HHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEG--GGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred HHHhcCCCCC-hhhhhcceEecccCCCCceEEECCCC-CEEEEcc--CCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 32 11100 000000 111334456789999975 6666665 688999999866764433332 3458899999
Q ss_pred CCCCeEEEEe
Q 012679 369 KNERELLSSH 378 (458)
Q Consensus 369 ~~~~~l~~~~ 378 (458)
+++..++++.
T Consensus 300 ~~g~l~v~~~ 309 (343)
T 2qe8_A 300 SDGYLYFDCN 309 (343)
T ss_dssp TTSCEEEEEC
T ss_pred CCCcEEEEeC
Confidence 9887766643
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.96 E-value=3.1e-07 Score=82.98 Aligned_cols=193 Identities=12% Similarity=0.054 Sum_probs=134.5
Q ss_pred cceeeccC-CCeEEEEc---CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceee
Q 012679 144 LNLLDWGS-SNVLAIAL---GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQL 218 (458)
Q Consensus 144 ~~~~~~~~-~~~la~~~---d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~ 218 (458)
..-+.|++ +.++.++. ++.|.++|..+++......+..+. ....+++. |+.|.++. .++.+.++|..+.+.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 45677777 44444443 479999999999985555454332 23345554 55565554 5789999999999999
Q ss_pred EEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEc-c-cc---cceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYR-G-HN---QEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~-h~---~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
.++..+ ...-..+++++..++.+..++.|.++|..+.+.. ..+. + +. ..++.+.|. ++..++....++.|.+
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~-~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLI-KKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEE-EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEE-EEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 998753 2333558888887777778899999999876643 3332 2 11 236678888 7765555556899999
Q ss_pred EeCCCCCCCCcceeeeeeccc-------------ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679 294 WDRSMASSNSVTQWLHRLEEH-------------TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h-------------~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
.|..+++. +..+.-. ......|+|+|++..+++++. ..+.+.+.++...
T Consensus 177 ID~~tg~V------~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKDGTL------LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLHLV 238 (266)
T ss_dssp EETTTCCE------EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEEEC
T ss_pred EECCCCcE------EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEecc
Confidence 99998876 3333211 124589999999999999987 7788888887654
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.96 E-value=6.1e-07 Score=84.19 Aligned_cols=238 Identities=9% Similarity=-0.050 Sum_probs=151.0
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC--C-----------------CcccEEEEEeC--CCeEEEE
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG--G-----------------HRSRVGSLAWN--NHILTTG 242 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~--~-----------------~~~~v~~l~~~--~~~l~sg 242 (458)
....+++|.++|+++.++..++.|..||..+++.. .+.. . ....+..++++ ...|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34677899999997888889999999998765432 2210 0 11357788885 4667777
Q ss_pred eCCCcEEEEEccCCCeeEEEEc----c-cccceEeEEEcC-CCCEEEEEEC-----------------CCcEEEEeCCCC
Q 012679 243 GMDGLIINNDVRVRDHIVETYR----G-HNQEVCGLKWSA-SGQQLASGGN-----------------DNLLHIWDRSMA 299 (458)
Q Consensus 243 ~~dg~i~vwd~~~~~~~~~~~~----~-h~~~v~~l~~sp-d~~~l~sg~~-----------------dg~i~iwd~~~~ 299 (458)
...+.|..+|..++. +..+. + .......+++.+ +|++.++-.. ++.|..||...+
T Consensus 98 d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp ETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred ECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 666668888876432 12221 1 113467899999 9987766432 367888887654
Q ss_pred CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC---CeeEEEeCCCCeEEEEEcCCCCeEEE
Q 012679 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG---ACLNSVDTGSQVCALLWNKNERELLS 376 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~ 376 (458)
.. ..+.........++|+|++..++++.. ..+.|..|++... .......... ...++++++|+..++
T Consensus 176 ~~-------~~~~~~~~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 176 ET-------TLLLKELHVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EE-------EEEEEEESCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred EE-------EEeccCCccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 32 111111234567999998877777755 5689999998752 2111112233 788999999987666
Q ss_pred Eec--------CCCCcEEEEeCCCceeeEEEeCCC----CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 377 SHG--------FTQNQLTLWKYPSMVKMAELSGHT----SRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 377 ~~g--------~~d~~i~iwd~~~~~~~~~~~~h~----~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
..+ ...+.|..+|. .++.+..+.... ..++.+++ .+++++++....+.|..+++....
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 533 11456888886 467666665432 34666766 466666666678889999875433
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=3.5e-07 Score=94.78 Aligned_cols=281 Identities=14% Similarity=0.125 Sum_probs=170.2
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEec------CCeEEEEeCCCceeeEEec
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLN------NCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~------dg~v~iwd~~~~~~~~~~~ 222 (458)
.+.+++++.++.|+.+|..+|+..-........ ....+.-+| .+..++++.. +|.|..+|..+++.+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTT-SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCC-CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 467778888999999999999973333322110 000111112 2345666644 5899999999999988775
Q ss_pred CC--Ccc----------------------------cEEEEEe--CCCeEEEEeCCC-------------------cEEEE
Q 012679 223 GG--HRS----------------------------RVGSLAW--NNHILTTGGMDG-------------------LIINN 251 (458)
Q Consensus 223 ~~--~~~----------------------------~v~~l~~--~~~~l~sg~~dg-------------------~i~vw 251 (458)
.. ... ....+++ ...+++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 31 100 0012445 357788887765 39999
Q ss_pred EccCCCeeEEEEcc-cc-------cceEeEEEcCCCC---EEEEEECCCcEEEEeCCCCCCCCcce-----eeeeeccc-
Q 012679 252 DVRVRDHIVETYRG-HN-------QEVCGLKWSASGQ---QLASGGNDNLLHIWDRSMASSNSVTQ-----WLHRLEEH- 314 (458)
Q Consensus 252 d~~~~~~~~~~~~~-h~-------~~v~~l~~spd~~---~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~h- 314 (458)
|.++++..-..-.. |. .+.....+..+|+ .++.++.+|.++++|..+++...... +...+...
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 99988764333222 22 2222223333665 68899999999999998887521000 00001000
Q ss_pred ccc------------------------eeEEEecCCCCcEEEEe---------------------------------CCC
Q 012679 315 TSA------------------------VKAIAWCPFQSNLLATG---------------------------------GGG 337 (458)
Q Consensus 315 ~~~------------------------v~~l~~~p~~~~ll~s~---------------------------------~g~ 337 (458)
..+ -..++++|+...+++.. ...
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 000 01266777655444311 001
Q ss_pred CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcE-EEEEEcCCCC
Q 012679 338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRV-LFMAQSPDGC 416 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V-~~l~~spdg~ 416 (458)
.++.|..||..+|+.+.............+...+..+++ |..++.|++||..+++.+..+....... .-+.+..+|+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~--g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~ 513 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE--ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE
Confidence 348899999999999988877666555556667778887 5589999999999999999887543211 1233344666
Q ss_pred -EEEEEeC--------------------CCcEEEEecCC
Q 012679 417 -TVASAAA--------------------DETLRFWNVFG 434 (458)
Q Consensus 417 -~l~s~s~--------------------Dg~i~iW~~~~ 434 (458)
+++.++. .+.|.++.+..
T Consensus 514 ~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g 552 (668)
T 1kv9_A 514 QYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDG 552 (668)
T ss_dssp EEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETC
T ss_pred EEEEEEecCCCccccccccccccccCCCCCeEEEEEcCc
Confidence 4554443 35788888865
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.92 E-value=8.8e-07 Score=90.05 Aligned_cols=280 Identities=11% Similarity=0.089 Sum_probs=171.4
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCC-E--------EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGP-V--------TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~-V--------~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
+.+++++.++.|+-+|..+|+. +.++...... . ..++. .+..+++++.++.|.-+|..+++.+....
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKR--LWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCE--EEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcE--EEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 5566666656699999999987 4443322110 0 11222 35678889999999999999999988766
Q ss_pred CCCcc---cEE-E-EEeCC----C-eEEEEe------CCCcEEEEEccCCCeeEEEEccccc------------------
Q 012679 223 GGHRS---RVG-S-LAWNN----H-ILTTGG------MDGLIINNDVRVRDHIVETYRGHNQ------------------ 268 (458)
Q Consensus 223 ~~~~~---~v~-~-l~~~~----~-~l~sg~------~dg~i~vwd~~~~~~~~~~~~~h~~------------------ 268 (458)
..... .+. . +..++ . .+++++ .+|.|..+|..+++..-.. .....
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~-~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR-PFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE-ESSTTCEEEETTEEEEESSCTTC
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec-CCCccccccccCccccccccccc
Confidence 42110 111 0 11222 2 566665 3789999999988754322 11000
Q ss_pred -----------------------ceEeEEEcCCCCEEEEEEC--------------------C----CcEEEEeCCCCCC
Q 012679 269 -----------------------EVCGLKWSASGQQLASGGN--------------------D----NLLHIWDRSMASS 301 (458)
Q Consensus 269 -----------------------~v~~l~~spd~~~l~sg~~--------------------d----g~i~iwd~~~~~~ 301 (458)
.-..+++.|+..+++.+.. | +.|.-+|..+++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 0023566677777776663 2 5799999988876
Q ss_pred CCcceeeeeecccc--------cceeEEEec-CCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCe--------
Q 012679 302 NSVTQWLHRLEEHT--------SAVKAIAWC-PFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV-------- 362 (458)
Q Consensus 302 ~~~~~~~~~~~~h~--------~~v~~l~~~-p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v-------- 362 (458)
.+..+...|. .++. +... .++. .+++.++ .+|.++++|..+|+.+..+.....+
T Consensus 304 ----~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 376 (582)
T 1flg_A 304 ----KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHAD--RNGFFYVVDRSNGKLQNAFPFVDNITWASHIDL 376 (582)
T ss_dssp ----EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSSCCCSEEEECT
T ss_pred ----EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEEC--CCceEEEEECCCCCEecccccccCccccccccc
Confidence 2333333332 1121 1111 3443 3566655 8999999999999998776543210
Q ss_pred --------------------------------------EEEEEcCCCCeEEEEec-------------------------
Q 012679 363 --------------------------------------CALLWNKNERELLSSHG------------------------- 379 (458)
Q Consensus 363 --------------------------------------~~~~~s~~~~~l~~~~g------------------------- 379 (458)
..++++|+...+++...
T Consensus 377 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 456 (582)
T 1flg_A 377 KTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFR 456 (582)
T ss_dssp TTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecccee
Confidence 13456666555554321
Q ss_pred ------CCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 380 ------FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 380 ------~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
...|.|..||+.+++.+.+..... ++..-.....+.+++.++.||.|+.||..+++.+.+...+
T Consensus 457 ~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 457 IKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp EEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 135789999999999887765332 2211111224667888999999999999999988776543
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.88 E-value=5e-06 Score=75.60 Aligned_cols=233 Identities=9% Similarity=-0.010 Sum_probs=144.3
Q ss_pred CCEEEEEecCCeEEEEeCCCceee-----EEecCCCcccEEEEEeC--CC-eEEEEeCCCcEEEEEccCCCeeEEEEccc
Q 012679 195 GRHIAIGLNNCQVQLWDSTANRQL-----RTLRGGHRSRVGSLAWN--NH-ILTTGGMDGLIINNDVRVRDHIVETYRGH 266 (458)
Q Consensus 195 g~~la~g~~dg~v~iwd~~~~~~~-----~~~~~~~~~~v~~l~~~--~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h 266 (458)
|.+|+.+.. +.|+.+++...... ..+.. ....+..++|+ +. ++++-...+.|..+++..... .......
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~ 77 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQD 77 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTT
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecC-CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECC
Confidence 345666554 47888887654321 11211 22456788885 34 445555678999999876542 2233233
Q ss_pred ccceEeEEEcCCCCEEEEE-ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEE
Q 012679 267 NQEVCGLKWSASGQQLASG-GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFW 345 (458)
Q Consensus 267 ~~~v~~l~~spd~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lw 345 (458)
.....++++++++..|..+ ...+.|.++++..... .............++++|++..++++..+...+.|..+
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 3567899999976655544 4567899999865332 11111122456789999987888877642225789888
Q ss_pred ECCCCCeeEEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679 346 NTHTGACLNSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA 423 (458)
Q Consensus 346 d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 423 (458)
++... ....+. .......+++++++..|+.+. ...+.|.++++........+.+ ......++.. ++..+++...
T Consensus 152 ~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d-~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~ 227 (267)
T 1npe_A 152 HMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVD-AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWK 227 (267)
T ss_dssp ETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETT
T ss_pred ecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEE-CCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECC
Confidence 87643 333332 234578999999988887764 3568999999976544433333 2334567764 3444444445
Q ss_pred CCcEEEEecCCCCcccc
Q 012679 424 DETLRFWNVFGAPQVIS 440 (458)
Q Consensus 424 Dg~i~iW~~~~~~~~~~ 440 (458)
.+.|..++..+++....
T Consensus 228 ~~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDT 244 (267)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCeEEEEeCCCCCceEE
Confidence 68999999887665444
No 249
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.87 E-value=9.3e-06 Score=75.51 Aligned_cols=239 Identities=11% Similarity=0.012 Sum_probs=141.1
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCC-C-cEEEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMD-G-LIINN 251 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d-g-~i~vw 251 (458)
+..+.. ......++|+++|+++++-..++.|..||.... ....+. .......++++ ++++++.... + .|..+
T Consensus 25 ~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 25 ITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred eEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 444543 256789999999997666667899999997753 333333 33467888884 5655544332 2 46677
Q ss_pred EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc--ceeee--eecccccceeEEEecCCC
Q 012679 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV--TQWLH--RLEEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~--~~~~h~~~v~~l~~~p~~ 327 (458)
|..++......-.........++..+++..+++-..++.|+++|......... ...+. .....-.....+ +|++
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 76655421111111222334555555555555554688999999764321000 00000 000111123444 7777
Q ss_pred CcEEEEeCCCCCCeEEEEECCC-CCe--eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee--EEEeCC
Q 012679 328 SNLLATGGGGGDRCIKFWNTHT-GAC--LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM--AELSGH 402 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~~-~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~--~~~~~h 402 (458)
..++++.. ..+.|..+++.. ++. ...+........++++++|+.+++ ....+.|.+++.. ++.. ..+...
T Consensus 179 ~~lyv~d~--~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va--~~~~~~V~~~~~~-G~~~~~~~~~~~ 253 (306)
T 2p4o_A 179 NFLYVSNT--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD-RSTTIIAQAEQG 253 (306)
T ss_dssp TEEEEEET--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred CEEEEEeC--CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE--eCCCCeEEEECCC-CCEEEEeecccc
Confidence 78888776 778999999875 332 122222245677899999987665 3357889999975 5442 223333
Q ss_pred CCcEEEEEEc---CCCCEEEEEeCCC
Q 012679 403 TSRVLFMAQS---PDGCTVASAAADE 425 (458)
Q Consensus 403 ~~~V~~l~~s---pdg~~l~s~s~Dg 425 (458)
...+++++|. |++..|+.++..+
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cCCceEEEEecccCCCCEEEEECCCC
Confidence 3568999998 8987777666543
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.86 E-value=9.9e-07 Score=89.56 Aligned_cols=260 Identities=14% Similarity=0.075 Sum_probs=156.4
Q ss_pred cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC--CEEEEEEcC--CCCEEEEEec------CCeEEEEeCCCceeeE
Q 012679 150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENG--PVTSVNWAP--DGRHIAIGLN------NCQVQLWDSTANRQLR 219 (458)
Q Consensus 150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~--~V~~v~~s~--~g~~la~g~~------dg~v~iwd~~~~~~~~ 219 (458)
..+.+++++.++.|+.+|..+|+..-...+..+.. .+. -+| .+..+++++. +|.|..+|..+++.+.
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 34667777789999999999998743333332110 111 112 2345666665 7899999999999988
Q ss_pred EecCCCcc-c-----------------------------------E-EEEEeC--CCeEEEEeCC---------------
Q 012679 220 TLRGGHRS-R-----------------------------------V-GSLAWN--NHILTTGGMD--------------- 245 (458)
Q Consensus 220 ~~~~~~~~-~-----------------------------------v-~~l~~~--~~~l~sg~~d--------------- 245 (458)
++...... . + ..++++ ...++.+..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 77642111 0 0 123333 3556655532
Q ss_pred -CcEEEEEccCCCeeEEEEc-ccc--------cceEeEEEcCCCC---EEEEEECCCcEEEEeCCCCCCCCcceeeeeec
Q 012679 246 -GLIINNDVRVRDHIVETYR-GHN--------QEVCGLKWSASGQ---QLASGGNDNLLHIWDRSMASSNSVTQWLHRLE 312 (458)
Q Consensus 246 -g~i~vwd~~~~~~~~~~~~-~h~--------~~v~~l~~spd~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 312 (458)
+.|..+|.++++..-..-. .|. .++. +....+|+ .++.++.+|.++++|..+++.... ..+.
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~----~~~~ 345 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA----EKVD 345 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE----EESS
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEee----eccc
Confidence 3589999998875433221 221 1221 22224674 577888999999999988765211 1111
Q ss_pred c-----------cccce--------------------------eEEEecCCCCcEEEEeC--------------------
Q 012679 313 E-----------HTSAV--------------------------KAIAWCPFQSNLLATGG-------------------- 335 (458)
Q Consensus 313 ~-----------h~~~v--------------------------~~l~~~p~~~~ll~s~~-------------------- 335 (458)
. ...++ ..++++|+...+++...
T Consensus 346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~ 425 (571)
T 2ad6_A 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence 0 00011 24577776555554321
Q ss_pred -----------C---CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC
Q 012679 336 -----------G---GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG 401 (458)
Q Consensus 336 -----------g---~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~ 401 (458)
+ ..++.|..||..+|+.+..+.....+........+..+++ +..++.|+.||..+++.+.++..
T Consensus 426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~--g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE--EcCCCeEEEEECCCCCEEEEEeC
Confidence 0 1458999999999999988876655444444445666666 55899999999999999998864
Q ss_pred CCCc-EEEEEEcCCCCEEE
Q 012679 402 HTSR-VLFMAQSPDGCTVA 419 (458)
Q Consensus 402 h~~~-V~~l~~spdg~~l~ 419 (458)
.... -.-+.+..+|+.++
T Consensus 504 ~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 504 PSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp SSCCCSCCEEEEETTEEEE
T ss_pred CCCcEeeeEEEEECCEEEE
Confidence 3221 11233556776444
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.86 E-value=1.4e-06 Score=77.90 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=123.8
Q ss_pred EEEEEEcCCCCEEEEEecCC--eEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEE-eCCCcEEEEEccCCCeeEEE
Q 012679 186 VTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTG-GMDGLIINNDVRVRDHIVET 262 (458)
Q Consensus 186 V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~ 262 (458)
...+.|+ ++.+..+++.+| .|+++|+++++.++.+......--..++..++.|... -.++.+.+||..+.+. +..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~-~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ-VRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE-EEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE-EEE
Confidence 5788898 666666666666 8999999999999988752222234466655555444 5688999999988775 444
Q ss_pred EcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--cc---cceeEEEecCCCCcEEEEeCCC
Q 012679 263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HT---SAVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 263 ~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~p~~~~ll~s~~g~ 337 (458)
+.-. ..-.+++ +|++.|+.+..++.|.++|..+.+. +..+.- .. ..+..+.|. + ..+++..-
T Consensus 123 i~~~-~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v------~~~I~V~~~g~~~~~lNELe~~-~-G~lyan~w-- 189 (262)
T 3nol_A 123 FNYD-GEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTP------VRTITVTAHGEELPELNELEWV-D-GEIFANVW-- 189 (262)
T ss_dssp EECS-SCCCCEE--ECSSCEEECCSSSEEEEECTTTCSE------EEEEECEETTEECCCEEEEEEE-T-TEEEEEET--
T ss_pred EECC-CCceEEe--cCCCEEEEECCCCeEEEEcCCCCeE------EEEEEeccCCccccccceeEEE-C-CEEEEEEc--
Confidence 4422 2223444 5677777666678899999888765 333322 12 233457776 3 45776654
Q ss_pred CCCeEEEEECCCCCeeEEEeCC-------------CCeEEEEEcCCCCeEEEEe
Q 012679 338 GDRCIKFWNTHTGACLNSVDTG-------------SQVCALLWNKNERELLSSH 378 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~~~~ 378 (458)
.+..|.+.|..+|+.+..++.. .-.+.++|+|+++.|++++
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6789999999999999988753 2458999999999998875
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.83 E-value=2e-06 Score=76.15 Aligned_cols=193 Identities=13% Similarity=0.078 Sum_probs=129.4
Q ss_pred ceeeeCCCCCCccccceeeccCCCeEEEEcC---CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEE-EecCC
Q 012679 130 ERTLDAPDLVDDYYLNLLDWGSSNVLAIALG---STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-GLNNC 205 (458)
Q Consensus 130 ~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d---~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~-g~~dg 205 (458)
..++..--+...-+..-+.++++.++.++.. +.|+.+|+.+++......+..+ .........++.|.. ...++
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~---~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP---YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT---CCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC---cceeEEEEeCCEEEEEEeeCC
Confidence 3444432233344566778887666555543 4999999999998665555432 222222233445544 45678
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcc--cc---cceEeEEEcCCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRG--HN---QEVCGLKWSASGQ 280 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~--h~---~~v~~l~~spd~~ 280 (458)
.+.+||..+.+.+.++..+ ..-..+++++..|+.+..++.|.++|..+... +..+.- +. ..++.+.|. +|+
T Consensus 86 ~v~v~D~~tl~~~~ti~~~--~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP--GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEEETTTTEEEEEEECS--SCCCEEEECSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCcCcEEEEEeCC--CCceEEeeCCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CCE
Confidence 9999999999999999852 33467788888787777899999999988764 333322 21 245567775 676
Q ss_pred EEEEEECCCcEEEEeCCCCCCCCcceeeeeec-------------ccccceeEEEecCCCCcEEEEeC
Q 012679 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-------------EHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 281 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
.++..-.++.|.+.|..+++. +..+. ....-.+.||++|++..++++|-
T Consensus 162 lyanvw~s~~I~vIDp~tG~V------~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKV------VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBE------EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCCE------EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 665555688999999998876 22221 11235688999999999999873
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.82 E-value=2.7e-05 Score=82.53 Aligned_cols=270 Identities=12% Similarity=0.092 Sum_probs=178.6
Q ss_pred cccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEec-----CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679 142 YYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVD-----DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 142 ~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~-----~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~ 215 (458)
..+.++.... +++..++.+ -|.+||..+++........ -....|.++...++|. |.+|+.++-|..|+..++
T Consensus 263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGG
T ss_pred CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcc
Confidence 3466666654 667777665 7999998877653332111 1235799999999887 567888778999987665
Q ss_pred eeeEEec-----CCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEc---------ccccceEeEEEcCCCC
Q 012679 216 RQLRTLR-----GGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYR---------GHNQEVCGLKWSASGQ 280 (458)
Q Consensus 216 ~~~~~~~-----~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---------~h~~~v~~l~~spd~~ 280 (458)
....... .-....|.++..+ ...|..|+.++-|..||..++.. ..+. .....|.++...++++
T Consensus 341 ~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~g~ 418 (795)
T 4a2l_A 341 RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF--TSYTLQEDESARGIGSNNIKAVYVDEKKS 418 (795)
T ss_dssp SSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE--EEECCC------CCSCSCEEEEEEETTTT
T ss_pred cceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE--EEEecCCCCcccCCCCccEEEEEEcCCCC
Confidence 4322111 1124568999886 45688888888899999876542 2221 1235688999888888
Q ss_pred EEEEEECCCcEEEEeCCCCCCCCcceeeeeec-----ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE
Q 012679 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-----EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS 355 (458)
Q Consensus 281 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~ 355 (458)
.|..|+.++-|.+||..++.. ..+. .....|.++...+++...+.+ . +-|.+||..+++....
T Consensus 419 ~lWigt~~~Gl~~~d~~~~~~-------~~~~~~~~~l~~~~v~~i~~d~~g~lwigt----~-~Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 419 LVYIGTHAGGLSILHRNSGQV-------ENFNQRNSQLVNENVYAILPDGEGNLWLGT----L-SALVRFNPEQRSFTTI 486 (795)
T ss_dssp EEEEEETTTEEEEEETTTCCE-------EEECTTTSCCSCSCEEEEEECSSSCEEEEE----S-SCEEEEETTTTEEEEC
T ss_pred EEEEEeCcCceeEEeCCCCcE-------EEeecCCCCcCCCeeEEEEECCCCCEEEEe----c-CceeEEeCCCCeEEEc
Confidence 677788878899999876543 1221 134578899988865544433 3 4588899887754432
Q ss_pred EeC-------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-------CCCCcEEEEEEcCCCCEEEEE
Q 012679 356 VDT-------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-------GHTSRVLFMAQSPDGCTVASA 421 (458)
Q Consensus 356 ~~~-------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-------~h~~~V~~l~~spdg~~l~s~ 421 (458)
... ...|.++...+++...+.+ . +.|..|+..+.+. .+. .....|.++...++|.+.++.
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGG---E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEE---S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred cccccccccCCceEEEEEECCCCCEEEEe---C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 211 2468899999998877753 2 4688888876654 332 123569999999999866644
Q ss_pred eCCCcEEEEecCCC
Q 012679 422 AADETLRFWNVFGA 435 (458)
Q Consensus 422 s~Dg~i~iW~~~~~ 435 (458)
.. -|..||....
T Consensus 561 -~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 561 -RE-GFYCFNEKDK 572 (795)
T ss_dssp -SS-CEEEEETTTT
T ss_pred -CC-CceeECCCCC
Confidence 34 5777876543
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.76 E-value=2e-05 Score=83.45 Aligned_cols=274 Identities=11% Similarity=0.049 Sum_probs=172.9
Q ss_pred cceeecc-CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 144 LNLLDWG-SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 144 ~~~~~~~-~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
+..+... .+.+.++..++.|+.|+..+++...... ..+...|.++...++|. |.+|+.++-|.+||..+++......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP-ILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC-CCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeec
Confidence 4444443 4567777766679999988877543321 12346799998888776 4556655458999988766443322
Q ss_pred C------CCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEc--------ccccceEeEEEcCCCCEEEEEEC
Q 012679 223 G------GHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYR--------GHNQEVCGLKWSASGQQLASGGN 287 (458)
Q Consensus 223 ~------~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--------~h~~~v~~l~~spd~~~l~sg~~ 287 (458)
. -....|.++..+ ...|..|+.+ -|.+||..+... ..+. -....|.++...++|. |..|+.
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~ 328 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTY 328 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEES
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEEC
Confidence 1 024569999885 4567777766 588898775542 2221 1235699999988887 556777
Q ss_pred CCcEEEEeCCCCCCCCcceeeeee----cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe------
Q 012679 288 DNLLHIWDRSMASSNSVTQWLHRL----EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD------ 357 (458)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~------ 357 (458)
++-|..|+....... ..... .-....|.++...+++...+.+ .++-|..||..++.......
T Consensus 329 ~~Gl~~~~~~~~~~~----~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt----~~~Gl~~~~~~~~~~~~~~~~~~~~~ 400 (795)
T 4a2l_A 329 FGGLNYYHPIRNRFK----NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGT----NDGGLNLYNPITQRFTSYTLQEDESA 400 (795)
T ss_dssp SSCEEEECGGGGSSE----EECCCTTSSSCSCSSEEEEEECTTSCEEEEE----SSSCEEEECTTTCCEEEECCC-----
T ss_pred CCCeEEeCCCcccce----EEcCCCCCCCCCCCeeEEEEECCCCCEEEEE----CCCCeEEEcCCCCcEEEEecCCCCcc
Confidence 778899986544321 01000 0123568899988865444432 56679999988776543221
Q ss_pred ---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe----CCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679 358 ---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS----GHTSRVLFMAQSPDGCTVASAAADETLRFW 430 (458)
Q Consensus 358 ---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~----~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW 430 (458)
....|.+++..+++..|.+ |..++.|.+||..+++...-.. .+...|.++...++|.+.+.. . +-|.+|
T Consensus 401 ~~l~~~~v~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~ 476 (795)
T 4a2l_A 401 RGIGSNNIKAVYVDEKKSLVYI--GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRF 476 (795)
T ss_dssp -CCSCSCEEEEEEETTTTEEEE--EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEE
T ss_pred cCCCCccEEEEEEcCCCCEEEE--EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEE
Confidence 1356889999888883444 3355679999988765433211 134579999999999866644 4 458888
Q ss_pred ecCCC
Q 012679 431 NVFGA 435 (458)
Q Consensus 431 ~~~~~ 435 (458)
+..++
T Consensus 477 ~~~~~ 481 (795)
T 4a2l_A 477 NPEQR 481 (795)
T ss_dssp ETTTT
T ss_pred eCCCC
Confidence 87654
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.76 E-value=5.3e-06 Score=74.07 Aligned_cols=190 Identities=7% Similarity=0.122 Sum_probs=125.4
Q ss_pred eeeEEecCCCcccEEEEEeC-CCeEEEEeCCC--cEEEEEccCCCeeEEEEcccccce--EeEEEcCCCCEEEEEE-CCC
Q 012679 216 RQLRTLRGGHRSRVGSLAWN-NHILTTGGMDG--LIINNDVRVRDHIVETYRGHNQEV--CGLKWSASGQQLASGG-NDN 289 (458)
Q Consensus 216 ~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~h~~~v--~~l~~spd~~~l~sg~-~dg 289 (458)
+.++++......-...|.|+ +.++.+.+.+| .|+++|+.+++.. ..+.-. ... -+++. ++..|.... .++
T Consensus 32 ~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~-~~~~l~-~~~FgeGit~--~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTL-QQIELG-KRYFGEGISD--WKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEE-EEEECC-TTCCEEEEEE--ETTEEEEEESSSS
T ss_pred EEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEE-EEEecC-CccceeEEEE--eCCEEEEEEeeCC
Confidence 45666652222334778885 45556666666 8999999988753 333322 222 33444 455554444 588
Q ss_pred cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC------CCeE
Q 012679 290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG------SQVC 363 (458)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~------~~v~ 363 (458)
.+.+||..+.+. +.++.... .-..++ +++..++++. .++.|.++|..+.+.+..+... ..++
T Consensus 108 ~v~v~D~~t~~~------~~ti~~~~-eG~glt--~dg~~L~~Sd---Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 108 LGFVWNIRNLRQ------VRSFNYDG-EGWGLT--HNDQYLIMSD---GTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEEEETTTCCE------EEEEECSS-CCCCEE--ECSSCEEECC---SSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEEECccCcE------EEEEECCC-CceEEe--cCCCEEEEEC---CCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 999999988776 55554322 113344 5677777764 2578999999999999888653 2345
Q ss_pred EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC------------CCcEEEEEEcCCCCEEEEEeCC
Q 012679 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH------------TSRVLFMAQSPDGCTVASAAAD 424 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h------------~~~V~~l~~spdg~~l~s~s~D 424 (458)
.+.|. +|+ +++. ...++.|.+.|..+++.+..+.-. ....+.||++|+++.|...+..
T Consensus 176 ELe~~-~G~-lyan-~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 176 ELEWV-DGE-IFAN-VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEE-TTE-EEEE-ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEE-CCE-EEEE-EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 67776 554 5543 346789999999999998887532 1346899999988877777653
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.74 E-value=7.7e-05 Score=70.69 Aligned_cols=239 Identities=7% Similarity=-0.067 Sum_probs=149.3
Q ss_pred eeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCC
Q 012679 146 LLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGG 224 (458)
Q Consensus 146 ~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~ 224 (458)
|.+..+...+..+..+.|+..++.......+ +. ....+..++|++.+..|... ...+.|..+++........+..
T Consensus 38 C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~--~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~- 113 (349)
T 3v64_C 38 CKALGPEPVLLFANRIDIRQVLPHRSEYTLL--LN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST- 113 (349)
T ss_dssp EEESSSCCEEEEECBSCEEEECTTSCCEEEE--EC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-
T ss_pred ccccccCceeEeecccceEEEeCCCCeeEEe--ec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC-
Confidence 3344445566677778899999877665332 22 24458999999866666555 4567899999887654433332
Q ss_pred CcccEEEEEe--C-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE-CC-CcEEEEeCCCC
Q 012679 225 HRSRVGSLAW--N-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG-ND-NLLHIWDRSMA 299 (458)
Q Consensus 225 ~~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~d-g~i~iwd~~~~ 299 (458)
.......+++ . +.++++-...+.|.+.++..... .......-....++++.|.+..|.... .. +.|..+++...
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 2222334444 3 45556666678999999875543 223333345678999999666555544 34 77888887654
Q ss_pred CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEe
Q 012679 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSH 378 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~ 378 (458)
.. .......-.....|+++|++..++++-. ..+.|..+|+........+.. ......+++. +..++.+
T Consensus 193 ~~------~~~~~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~t- 261 (349)
T 3v64_C 193 GR------RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWT- 261 (349)
T ss_dssp SC------EESCCSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEE-
T ss_pred Cc------EEEEECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEe-
Confidence 32 1111222345678999998888888876 678999999875443333322 3456777773 3344444
Q ss_pred cCCCCcEEEEeCCCceeeEEEe
Q 012679 379 GFTQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 379 g~~d~~i~iwd~~~~~~~~~~~ 400 (458)
....+.|..++..+++.+..+.
T Consensus 262 d~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 262 DWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCCeEEEEEccCCCccEEec
Confidence 3467788888866666655554
No 257
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.72 E-value=3.4e-05 Score=74.21 Aligned_cols=237 Identities=11% Similarity=0.006 Sum_probs=150.1
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEE
Q 012679 187 TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETY 263 (458)
Q Consensus 187 ~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 263 (458)
+|.+..+ ..+|+.+.. ..|+.+++........+. ....+..++|+ +.++++-...+.|..+++..... ...+
T Consensus 80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp CEEECSS-CCEEEEECB-SCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred eECCccc-cceeEeecC-ccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 3444444 345555544 468888887765544443 34457889985 34555556678899999876542 2223
Q ss_pred cccccceEeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-Ce
Q 012679 264 RGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-RC 341 (458)
Q Consensus 264 ~~h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~~ 341 (458)
........++++.+.+..| ++-...+.|.+.++..... ...+.........+++.|.+..++.+.. .. +.
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~ 226 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPR 226 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCE
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------EEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCE
Confidence 3333456788998855554 5555577888888765432 2222233355689999998888888765 34 78
Q ss_pred EEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEE
Q 012679 342 IKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS 420 (458)
Q Consensus 342 i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 420 (458)
|..+++........... -.....+++++++..|+.+- ...+.|..+++........+.........|++ ..+..+++
T Consensus 227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-AKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE-TTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE-CCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEe
Confidence 99999865443333332 34578999999888887764 35678999998754433333333455678888 34555666
Q ss_pred EeCCCcEEEEecCCCCcc
Q 012679 421 AAADETLRFWNVFGAPQV 438 (458)
Q Consensus 421 ~s~Dg~i~iW~~~~~~~~ 438 (458)
....+.|..++..++...
T Consensus 305 d~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 305 DWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp ETTTTEEEEEETTTCCSC
T ss_pred eCCCCeEEEEECCCCcce
Confidence 666788888885555443
No 258
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.71 E-value=0.00016 Score=66.00 Aligned_cols=276 Identities=10% Similarity=0.079 Sum_probs=186.9
Q ss_pred ceeeccCCCeEEEEc----CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 145 NLLDWGSSNVLAIAL----GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 145 ~~~~~~~~~~la~~~----d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
..+.+.++..+++-. +..|.|.|+.++.......+.. -+.-.+|..+.||.-. ...++|+|+++...++.
T Consensus 29 ~~lTmESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~A-----dsAIMnP~~~ViALra-g~~LQiFnletK~klks 102 (365)
T 2xzh_A 29 STLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA 102 (365)
T ss_dssp TTEEEEETTEEEEEEEETTEEEEEEEETTSTTSCEEEECCC-----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred ceeeeecCceEEEEecCCCCCEEEEEECCCCCCcccccccc-----ceeeeCCCccEEEEec-CCeEEEechHHhhhhcc
Confidence 344455566666554 2378999998876532333332 2344589888888776 56899999999999998
Q ss_pred ecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEccc----ccceEeEEEcCCCCEEEEEEC-------C
Q 012679 221 LRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGH----NQEVCGLKWSASGQQLASGGN-------D 288 (458)
Q Consensus 221 ~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~~l~~spd~~~l~sg~~-------d 288 (458)
+. ....|.--.| +.+.|+..+. ..|+.|++.....+++.+..| ...|..-..+++.++++..|- .
T Consensus 103 ~~--~~e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~ 179 (365)
T 2xzh_A 103 HT--MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 179 (365)
T ss_dssp EE--CSSCEEEEEECSSSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEE
T ss_pred ee--cCCccEEEEecCCCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccc
Confidence 88 5568888888 6777766654 579999998766666666654 346777888899998876542 3
Q ss_pred CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC--CCcEEEEeCC-CCCCeEEEEECCCC---C-----eeEEE-
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF--QSNLLATGGG-GGDRCIKFWNTHTG---A-----CLNSV- 356 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~ll~s~~g-~~d~~i~lwd~~~~---~-----~~~~~- 356 (458)
|.+.+|..+... .+.+++|.+....+....+ ...+++.+.- ...+.+++-++... . ....+
T Consensus 180 G~mQLYS~er~~-------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~ 252 (365)
T 2xzh_A 180 GAMQLYSVDRKV-------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 252 (365)
T ss_dssp EEEEEEETTTTE-------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEEC
T ss_pred eeEEEEeecccc-------cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceee
Confidence 678899877654 4667888776655444321 2234443321 12258999988432 1 11111
Q ss_pred -eC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 357 -DT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 357 -~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
.. ..-..++..++....++..+ .-|.|.+||+.++.++..-+-....|..-+......=++.....|.|.--.+
T Consensus 253 fppea~~DFPVamqvs~kygviyviT--K~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v 330 (365)
T 2xzh_A 253 FPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV 330 (365)
T ss_dssp CCTTCTTCCEEEEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEE
T ss_pred CCccccCCceEEEEecccCCEEEEEe--CCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEE
Confidence 11 23367888888888888765 7899999999999999888777777766666555455666778898887777
Q ss_pred CCCCcc
Q 012679 433 FGAPQV 438 (458)
Q Consensus 433 ~~~~~~ 438 (458)
.+...+
T Consensus 331 ~~~~iv 336 (365)
T 2xzh_A 331 EEENII 336 (365)
T ss_dssp CTTTHH
T ss_pred CcccEe
Confidence 765543
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.70 E-value=0.00013 Score=68.15 Aligned_cols=230 Identities=10% Similarity=-0.012 Sum_probs=143.2
Q ss_pred eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCC---ceeeEE-ecCCCccc
Q 012679 154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTA---NRQLRT-LRGGHRSR 228 (458)
Q Consensus 154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~---~~~~~~-~~~~~~~~ 228 (458)
++..+..+.|+..|+.+.+...+ +. ....+..++|++++..|..+ ...+.|..+++.. +..... +.. .-..
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~--~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~ 78 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQA 78 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEE--EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSC
T ss_pred EEEEECCCeEEEEECCCcceEeh--hc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-CCCC
Confidence 45667778899999988775433 22 34568999999876666555 4568999999876 122222 222 2223
Q ss_pred EEEEEe--CC-CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC--CcEEEEeCCCCCCCC
Q 012679 229 VGSLAW--NN-HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND--NLLHIWDRSMASSNS 303 (458)
Q Consensus 229 v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d--g~i~iwd~~~~~~~~ 303 (458)
...+++ .+ .+.++-...+.|.+.++..... ............++++.|.+..|..+... +.|...++.....
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-- 155 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-- 155 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--
Confidence 345554 34 4555656788999999875432 22233334567899999976666555543 6788888754321
Q ss_pred cceeeeee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEEec
Q 012679 304 VTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSSHG 379 (458)
Q Consensus 304 ~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g 379 (458)
..+ ...-.....|+++|++..++++-. ..+.|..+|+........... ......+++. +..++.+ .
T Consensus 156 -----~~~~~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~-d 225 (316)
T 1ijq_A 156 -----YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-D 225 (316)
T ss_dssp -----EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-E
T ss_pred -----EEEEECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEE-E
Confidence 222 122345679999998888888876 678999999875333222222 2346677775 3445544 3
Q ss_pred CCCCcEEEEeCCCceeeEEEe
Q 012679 380 FTQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 380 ~~d~~i~iwd~~~~~~~~~~~ 400 (458)
...+.|..++..+++.+..+.
T Consensus 226 ~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 226 IINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTTTEEEEEETTTCCCCEEEE
T ss_pred CCCCeEEEEeCCCCcceEEEe
Confidence 467889999887776666554
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.70 E-value=6e-05 Score=71.44 Aligned_cols=237 Identities=10% Similarity=0.007 Sum_probs=148.8
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVET 262 (458)
Q Consensus 186 V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~ 262 (458)
.+|.+..++ .+|+.+.. ..|+..++........+. ....+..++|+ +.++++-...+.|..+++..... ...
T Consensus 36 ~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~ 110 (349)
T 3v64_C 36 RSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEV 110 (349)
T ss_dssp SCEEESSSC-CEEEEECB-SCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred CcccccccC-ceeEeecc-cceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEE
Confidence 355555553 35555543 458888887655444443 33457888985 34555555678899999876542 222
Q ss_pred EcccccceEeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-C
Q 012679 263 YRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-R 340 (458)
Q Consensus 263 ~~~h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~ 340 (458)
.........++++.+.+..| ++-...+.|.+.++..... ...+.........+++.|.+..++.+.. .. +
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~ 182 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTP 182 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECTTCSCEEEEEEETTTTEEEEEEC--SSSC
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------EEEEeCCCCCcceEEEecCcCeEEEecc--CCCC
Confidence 32233456789998755544 5555678899999875432 2222233345689999998888888765 44 7
Q ss_pred eEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEE
Q 012679 341 CIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA 419 (458)
Q Consensus 341 ~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 419 (458)
.|...++........+. .-.....+++++++..|+.+- ...+.|..+++........+.........|++. ++...+
T Consensus 183 ~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD-~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~ 260 (349)
T 3v64_C 183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-AKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYW 260 (349)
T ss_dssp EEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEE
T ss_pred EEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE-CCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEE
Confidence 89999886543332222 234578999999888887764 356789999987543333333334556788883 455556
Q ss_pred EEeCCCcEEEEecCCCCc
Q 012679 420 SAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 420 s~s~Dg~i~iW~~~~~~~ 437 (458)
+-...+.|...+-.++..
T Consensus 261 td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 261 TDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EETTTTEEEEEETTTCCS
T ss_pred ecCCCCeEEEEEccCCCc
Confidence 655677888887544443
No 261
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.68 E-value=5.5e-05 Score=72.77 Aligned_cols=248 Identities=6% Similarity=-0.059 Sum_probs=154.7
Q ss_pred eccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCCCc
Q 012679 148 DWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGGHR 226 (458)
Q Consensus 148 ~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~ 226 (458)
...+...+..+..+.|+.+++..+....+. . ....+..++|.+.+..|... ...+.|..+++........+.. ..
T Consensus 83 ~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~--~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~ 158 (386)
T 3v65_B 83 ALGPEPVLLFANRIDIRQVLPHRSEYTLLL--N-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GL 158 (386)
T ss_dssp ECSSCCEEEEECBSCEEEECTTSCCCEEEE--C-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS-SC
T ss_pred CccccceeEeecCccceeeccCCCcEEEEe--c-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-CC
Confidence 334455677777888999998877653332 2 24568999999866555554 4667899999887654333332 22
Q ss_pred ccEE--EEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-C-CcEEEEeCCCCCC
Q 012679 227 SRVG--SLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-D-NLLHIWDRSMASS 301 (458)
Q Consensus 227 ~~v~--~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-d-g~i~iwd~~~~~~ 301 (458)
.... ++.|. +.++++-...+.|.+.++..... ...+........++++.|.+..|..... . +.|..+++.....
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence 2233 44443 45556666678888888875442 2233333456789999997766655543 3 6788888765432
Q ss_pred CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecC
Q 012679 302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGF 380 (458)
Q Consensus 302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~ 380 (458)
.............|+|+|++..|+++-. ..+.|..+|+........+.. ......+++. . ..++.+ ..
T Consensus 238 ------~~~~~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~-~~ly~t-d~ 306 (386)
T 3v65_B 238 ------RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWT-DW 306 (386)
T ss_dssp ------EEEECSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-T-TEEEEE-ET
T ss_pred ------EEEEECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-C-CEEEEe-eC
Confidence 1222222345678999998888888876 678999999875443333332 3456777773 3 344444 34
Q ss_pred CCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ 411 (458)
Q Consensus 381 ~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 411 (458)
..+.|..++..+++.+..+.........|++
T Consensus 307 ~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 307 HTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 6778888887777766666543333444443
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.68 E-value=4.2e-06 Score=74.76 Aligned_cols=191 Identities=11% Similarity=0.110 Sum_probs=126.7
Q ss_pred eeeEEecCCCcccEEEEEeCC-CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679 216 RQLRTLRGGHRSRVGSLAWNN-HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294 (458)
Q Consensus 216 ~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw 294 (458)
+.++++......-...|.|++ .++.+.+.+|.|+++|+.+++..... .......-++++.. +++.+..-.++.+.+|
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEE
Confidence 455666522334457888865 55667778889999999988754333 22221223455542 3444455568999999
Q ss_pred eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC------CeEEEEEc
Q 012679 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS------QVCALLWN 368 (458)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~------~v~~~~~s 368 (458)
|..+.+. +.++... ..-..++ +++..++++. .++.|.++|..+.+.+..+.... .++.+.|.
T Consensus 122 D~~Tl~~------~~ti~~~-~eGwGLt--~Dg~~L~vSd---Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 122 SGMPPQR------ERTTRYS-GEGWGLC--YWNGKLVRSD---GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp ETTTTEE------EEEEECS-SCCCCEE--EETTEEEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred ECCcCcE------EEEEeCC-CceeEEe--cCCCEEEEEC---CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 9988766 5555432 2223444 4567777764 37799999999999998886532 45677887
Q ss_pred CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-------------CCcEEEEEEcCCCCEEEEEeC
Q 012679 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-------------TSRVLFMAQSPDGCTVASAAA 423 (458)
Q Consensus 369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-------------~~~V~~l~~spdg~~l~s~s~ 423 (458)
+|+ +++. ...++.|.+.|..+++.+..+.-. ....+.||++|+++.|...+.
T Consensus 190 -dG~-lyan-vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 190 -NGV-IYAN-IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TTE-EEEE-ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCE-EEEE-ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 564 5543 346789999999999998877532 135689999997665555543
No 263
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.68 E-value=0.00023 Score=68.70 Aligned_cols=245 Identities=9% Similarity=-0.043 Sum_probs=155.9
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCc----eeeEEecCCC
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTAN----RQLRTLRGGH 225 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~----~~~~~~~~~~ 225 (458)
+..++..+....|+..++.......+. .....+..++|++.+..|.... ..+.|+.+++... .....+.. .
T Consensus 82 ~~~~ll~~~~~~I~~i~l~~~~~~~~~---~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~ 157 (400)
T 3p5b_L 82 SIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D 157 (400)
T ss_dssp TSCEEEEEETTEEEEECTTSCSCEEEE---CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-S
T ss_pred ccceeEEeccceeEEEccCCcceeEec---cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-C
Confidence 455777788899999999877654332 2356789999998666665554 5678999988652 22222222 3
Q ss_pred cccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCC
Q 012679 226 RSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMAS 300 (458)
Q Consensus 226 ~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~ 300 (458)
......+++ .+++.++-...+.|.+.++..... ...+........+|++.|.+..|+.... .+.|...++....
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 334555555 345666666778999999875543 2233333455789999997666665543 3688888876543
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEE
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSS 377 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~ 377 (458)
. .......-.....|++++++..|+.+-. ..+.|..+|+........+.. -.....++. ++..++.+
T Consensus 237 ~------~~~~~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywt 306 (400)
T 3p5b_L 237 I------YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT 306 (400)
T ss_dssp C------EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEE
T ss_pred c------EEEEECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEe
Confidence 3 1222223356788999998888888765 678999999875444333332 234556766 34445544
Q ss_pred ecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ 411 (458)
Q Consensus 378 ~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 411 (458)
....+.|..++..+++.+..+.........++.
T Consensus 307 -d~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 307 -DIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp -ESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred -cCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 346778999998888777776654444555544
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.68 E-value=1.8e-05 Score=80.44 Aligned_cols=264 Identities=15% Similarity=0.095 Sum_probs=153.1
Q ss_pred eEEEEcCCEEEEEECCCCCeeeEEEecCCC--CCEEE-EEEcCCCCEEEEEec------CCeEEEEeCCCceeeEEecCC
Q 012679 154 VLAIALGSTVYLWDASDGTTSELVTVDDEN--GPVTS-VNWAPDGRHIAIGLN------NCQVQLWDSTANRQLRTLRGG 224 (458)
Q Consensus 154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~--~~V~~-v~~s~~g~~la~g~~------dg~v~iwd~~~~~~~~~~~~~ 224 (458)
+++++.++.|+.+|..+|+..-...+..+. ..+++ -.. .++ .+++++. +|.|+.+|..+++.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 888888999999999999973333332210 01111 011 134 5666653 799999999999998877642
Q ss_pred Cccc------------------------------------E-EEEEe--CCCeEEEEeCC----------------CcEE
Q 012679 225 HRSR------------------------------------V-GSLAW--NNHILTTGGMD----------------GLII 249 (458)
Q Consensus 225 ~~~~------------------------------------v-~~l~~--~~~~l~sg~~d----------------g~i~ 249 (458)
.... + ..+++ ...+++.+..+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 2110 0 01223 35667776654 3799
Q ss_pred EEEccCCCeeEEEEcc-cc--------cceEeEEEc-CCC---CEEEEEECCCcEEEEeCCCCCCCCcceee------ee
Q 012679 250 NNDVRVRDHIVETYRG-HN--------QEVCGLKWS-ASG---QQLASGGNDNLLHIWDRSMASSNSVTQWL------HR 310 (458)
Q Consensus 250 vwd~~~~~~~~~~~~~-h~--------~~v~~l~~s-pd~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~------~~ 310 (458)
.+|.++++..-..-.. |. .++. +... .+| ..++.++.+|.++++|..+++........ ..
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999988754332222 21 1121 2222 467 46777889999999999887652110000 00
Q ss_pred ec-ccccce--------------------------eEEEecCCCCcEEEEe-----------------------------
Q 012679 311 LE-EHTSAV--------------------------KAIAWCPFQSNLLATG----------------------------- 334 (458)
Q Consensus 311 ~~-~h~~~v--------------------------~~l~~~p~~~~ll~s~----------------------------- 334 (458)
+. ....++ ..++++|+...+++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 00 000001 2456666544333311
Q ss_pred -CCC------CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc-E
Q 012679 335 -GGG------GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR-V 406 (458)
Q Consensus 335 -~g~------~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-V 406 (458)
... .++.|..||+.+|+.+.......+...-.....+..+++ |..|+.|+.||..+++.+.+++-.... .
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~--gt~dg~l~A~D~~tG~~lW~~~l~~g~~~ 518 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGAIG 518 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEE--ECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence 001 357899999999999988865544332223335666666 558999999999999999988643321 1
Q ss_pred EEEEEcCCCC-EEEEEe
Q 012679 407 LFMAQSPDGC-TVASAA 422 (458)
Q Consensus 407 ~~l~~spdg~-~l~s~s 422 (458)
.-+.+..+|+ ++++.+
T Consensus 519 ~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 519 YPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp CCEEEEETTEEEEEEEE
T ss_pred ccEEEEeCCEEEEEEEc
Confidence 2244456776 444443
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.68 E-value=1.2e-06 Score=90.65 Aligned_cols=252 Identities=12% Similarity=0.091 Sum_probs=145.4
Q ss_pred EEEEEECCCCCeeeEEEecCC-CCCEEEEEEcCCCCEEEEEec-CCeEEEEeCCCceeeEE--ecCCCcccEEEEEe-CC
Q 012679 162 TVYLWDASDGTTSELVTVDDE-NGPVTSVNWAPDGRHIAIGLN-NCQVQLWDSTANRQLRT--LRGGHRSRVGSLAW-NN 236 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h-~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~-~~ 236 (458)
.+.+||..++++..+..+... .....++++..+|+++++|+. ++.+.+||..+++-... +.. ......+... ++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg 298 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDG 298 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTS
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCC
Confidence 689999999988766655432 233445778899999999984 45899999887754332 221 2222344555 78
Q ss_pred CeEEEEe-CC-----CcEEEEEccCCCeeEEEEcc-----cccceEeEEEcCCCCEEEEEECCC---------cEEEEeC
Q 012679 237 HILTTGG-MD-----GLIINNDVRVRDHIVETYRG-----HNQEVCGLKWSASGQQLASGGNDN---------LLHIWDR 296 (458)
Q Consensus 237 ~~l~sg~-~d-----g~i~vwd~~~~~~~~~~~~~-----h~~~v~~l~~spd~~~l~sg~~dg---------~i~iwd~ 296 (458)
++++.|+ .+ ..+.+||..+... ..+.. ....-....+..++..++.|+.+| .+..||.
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W--~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~ 376 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSSKTW--TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT 376 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEE--EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred eEEEEeCcccCCcccccceEeCCCCCcc--eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence 9999998 34 4689999987653 22210 000000112234566666665554 4677887
Q ss_pred CCCCCCCcceeeeeecccc---------cceeEEEecCCCCcEEEEeCCCC-C-----C---eEEEEECCCCCeeEEE--
Q 012679 297 SMASSNSVTQWLHRLEEHT---------SAVKAIAWCPFQSNLLATGGGGG-D-----R---CIKFWNTHTGACLNSV-- 356 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~p~~~~ll~s~~g~~-d-----~---~i~lwd~~~~~~~~~~-- 356 (458)
..... ......+. ..-.++.+...+..+++.||... + . .|.+||..+.......
T Consensus 377 ~~~~w------~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 450 (656)
T 1k3i_A 377 SGSGD------VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN 450 (656)
T ss_dssp STTCE------EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT
T ss_pred CCcce------eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC
Confidence 66542 11111111 12234455454677888775211 1 1 6888898887655433
Q ss_pred eC--CCCeEEEEEcCCCCeEEEEecCC----------CCcEEEEeCCCceee--EEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679 357 DT--GSQVCALLWNKNERELLSSHGFT----------QNQLTLWKYPSMVKM--AELSGHTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 357 ~~--~~~v~~~~~s~~~~~l~~~~g~~----------d~~i~iwd~~~~~~~--~~~~~h~~~V~~l~~spdg~~l~s~s 422 (458)
.. ...-.+.+..++++.+++. |.. -..+.+||..+.+-. ..+...........+.|||+.++.||
T Consensus 451 ~mp~~R~~~~~~~l~~g~i~v~G-G~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 451 GLYFARTFHTSVVLPDGSTFITG-GQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CCSSCCBSCEEEECTTSCEEEEC-CBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred CCCCCcccCCeEECCCCCEEEEC-CcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCC
Confidence 21 2223455677888877773 322 256899998765432 22211112223455679999999998
Q ss_pred C
Q 012679 423 A 423 (458)
Q Consensus 423 ~ 423 (458)
.
T Consensus 530 ~ 530 (656)
T 1k3i_A 530 G 530 (656)
T ss_dssp C
T ss_pred C
Confidence 5
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.68 E-value=1.9e-05 Score=69.93 Aligned_cols=180 Identities=11% Similarity=0.074 Sum_probs=122.4
Q ss_pred CCEEEEEEcCCCCEEEEEecC--CeEEEEeCCCceeeEEecCCCcccEEEEEeCC-CeEEEEeCCCcEEEEEccCCCeeE
Q 012679 184 GPVTSVNWAPDGRHIAIGLNN--CQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN-HILTTGGMDGLIINNDVRVRDHIV 260 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~~~~~~~ 260 (458)
.....+.|++ +.+..+.+.+ +.|+.+|+.+++.++.+......--..++..+ .+....-.++.+.+||..+.+. +
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~-~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP-R 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE-E
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE-E
Confidence 4577899986 5544555554 48999999999999988742222223455544 5555556789999999987764 4
Q ss_pred EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--cc---cceeEEEecCCCCcEEEEeC
Q 012679 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HT---SAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~p~~~~ll~s~~ 335 (458)
..+... ..-.+++ +++..|+.+..++.|.++|..+.+. +.++.- +. ..++.+.|. +..+++..-
T Consensus 99 ~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~------~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw 167 (243)
T 3mbr_X 99 ARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ------VGSIKVTAGGRPLDNLNELEWV--NGELLANVW 167 (243)
T ss_dssp EEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCE------EEEEECEETTEECCCEEEEEEE--TTEEEEEET
T ss_pred EEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeE------EEEEEEccCCcccccceeeEEe--CCEEEEEEC
Confidence 444432 2223444 5677777667789999999888765 333322 22 234556665 345666654
Q ss_pred CCCCCeEEEEECCCCCeeEEEeCC--------------CCeEEEEEcCCCCeEEEEe
Q 012679 336 GGGDRCIKFWNTHTGACLNSVDTG--------------SQVCALLWNKNERELLSSH 378 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~ 378 (458)
.+..|.+.|..+|+.+..++.. .-.+.++|+|+++.|+++.
T Consensus 168 --~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 168 --LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp --TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred --CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 5779999999999999988632 2468999999999888874
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.67 E-value=1.4e-05 Score=71.47 Aligned_cols=179 Identities=9% Similarity=0.039 Sum_probs=125.3
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC-CeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN-HILTTGGMDGLIINNDVRVRDHIVET 262 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~ 262 (458)
.....+.|+ ++.+..+.+.+|.|+++|+++++.++.+ .....-.-.++..+ .+.+..-.++.+.+||..+.+. +..
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~-~~t 131 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR-ERT 131 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE-EEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE-EEE
Confidence 345788887 4556666778889999999999998887 42322234466755 5555556789999999987764 444
Q ss_pred EcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--ccc---ceeEEEecCCCCcEEEEeCCC
Q 012679 263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HTS---AVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 263 ~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~~---~v~~l~~~p~~~~ll~s~~g~ 337 (458)
+.. ...-.+++ +|++.|+.+..++.|.++|..+.+. +.++.- +.. .+..+.|. ++ .+++..-
T Consensus 132 i~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v------~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw-- 198 (268)
T 3nok_A 132 TRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL------VGAVQVKLRGQPVELINELECA-NG-VIYANIW-- 198 (268)
T ss_dssp EEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCE------EEEEECEETTEECCCEEEEEEE-TT-EEEEEET--
T ss_pred EeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE------EEEEEeCCCCcccccccccEEe-CC-EEEEEEC--
Confidence 443 22223444 5788888777799999999888765 333322 222 34567776 34 5776654
Q ss_pred CCCeEEEEECCCCCeeEEEeCC--------------CCeEEEEEcCCCCeEEEEe
Q 012679 338 GDRCIKFWNTHTGACLNSVDTG--------------SQVCALLWNKNERELLSSH 378 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~ 378 (458)
.+..|.+.|..+|+.+..++.. .-.+.|+|+|+++.|+++.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6789999999999999988643 2468999999988888864
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.65 E-value=2e-05 Score=80.13 Aligned_cols=269 Identities=10% Similarity=0.091 Sum_probs=156.7
Q ss_pred cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC--CEE---EEEEc-CCCC-EEEEEec------CCeEEEEeCCCce
Q 012679 150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENG--PVT---SVNWA-PDGR-HIAIGLN------NCQVQLWDSTANR 216 (458)
Q Consensus 150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~--~V~---~v~~s-~~g~-~la~g~~------dg~v~iwd~~~~~ 216 (458)
..+.+++++.++.|+.+|..+|+..-...+..+.. .+. .+.=. .+|+ .+++++. +|.|.-+|..+++
T Consensus 116 ~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 116 YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 35678888899999999999999733333322110 111 11101 1233 5666653 7899999999999
Q ss_pred eeEEecCCCcccE-----------------------------------------EEEEe--CCCeEEEEeC---------
Q 012679 217 QLRTLRGGHRSRV-----------------------------------------GSLAW--NNHILTTGGM--------- 244 (458)
Q Consensus 217 ~~~~~~~~~~~~v-----------------------------------------~~l~~--~~~~l~sg~~--------- 244 (458)
.+...... ...+ ..+++ ...+++.+..
T Consensus 196 ~~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 196 EIWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp EEEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred EEeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 88765431 0000 01222 2356665552
Q ss_pred -----------C----CcEEEEEccCCCeeEEEEc-ccc--------cceEeEEEc-CCCC---EEEEEECCCcEEEEeC
Q 012679 245 -----------D----GLIINNDVRVRDHIVETYR-GHN--------QEVCGLKWS-ASGQ---QLASGGNDNLLHIWDR 296 (458)
Q Consensus 245 -----------d----g~i~vwd~~~~~~~~~~~~-~h~--------~~v~~l~~s-pd~~---~l~sg~~dg~i~iwd~ 296 (458)
| +.|..+|.++++..-..-. .|. .++. +... .+|+ .++.++.+|.++++|.
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~ 353 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDR 353 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEEC
Confidence 2 5899999998876433222 232 1221 1221 4674 7888999999999999
Q ss_pred CCCCCCCccee------eeeec-------------c---------ccc-----------ceeEEEecCCCCcEEEEeC--
Q 012679 297 SMASSNSVTQW------LHRLE-------------E---------HTS-----------AVKAIAWCPFQSNLLATGG-- 335 (458)
Q Consensus 297 ~~~~~~~~~~~------~~~~~-------------~---------h~~-----------~v~~l~~~p~~~~ll~s~~-- 335 (458)
.+++....... ...+. . ... .-..++++|....+++...
T Consensus 354 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~ 433 (582)
T 1flg_A 354 SNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHW 433 (582)
T ss_dssp TTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECE
T ss_pred CCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhc
Confidence 88765211000 00000 0 000 0013566775555544321
Q ss_pred ----------------------------CCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEE
Q 012679 336 ----------------------------GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL 387 (458)
Q Consensus 336 ----------------------------g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~i 387 (458)
...++.|..||+.+|+.+.......++..-.....+..+++ |..|+.++.
T Consensus 434 ~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--g~~dg~l~A 511 (582)
T 1flg_A 434 KEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKA 511 (582)
T ss_dssp EEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEE
T ss_pred ceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE--ECCCCcEEE
Confidence 01368899999999999988776554433223334666666 558999999
Q ss_pred EeCCCceeeEEEeCCCCcE-EEEEEcCCCC-EEEEEe
Q 012679 388 WKYPSMVKMAELSGHTSRV-LFMAQSPDGC-TVASAA 422 (458)
Q Consensus 388 wd~~~~~~~~~~~~h~~~V-~~l~~spdg~-~l~s~s 422 (458)
||..+++.+.+++.....+ .-+.+..+|+ ++++.+
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 9999999999887543221 1255666776 444443
No 269
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.65 E-value=8.3e-05 Score=66.61 Aligned_cols=206 Identities=11% Similarity=0.134 Sum_probs=136.2
Q ss_pred EecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEcc
Q 012679 178 TVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVR 254 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~ 254 (458)
.+.+-.+.+..++|+|++..| ++...++.|...|.. ++.++.+...-....-.|++. +.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 455666789999999976644 557778899999988 888888764334567778883 4455555567889999886
Q ss_pred CCCe--eEEEEc------ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee--e--cccccceeEEE
Q 012679 255 VRDH--IVETYR------GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--L--EEHTSAVKAIA 322 (458)
Q Consensus 255 ~~~~--~~~~~~------~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~--~~h~~~v~~l~ 322 (458)
.... .+.... .......+|+|+|+++.|.++.......||.+.............. + ..+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6542 112221 2344568999999998777777655555555542111000010100 0 11234578999
Q ss_pred ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC----------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG----------SQVCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
++|..+.+++... ..+.|..+|.. |+.+..+... .+.-.+++.++|+..+++ +.+.+++|.-
T Consensus 180 ~dp~tg~lliLS~--~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs---E~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSH--ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS---EPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEET--TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE---TTTEEEEEEC
T ss_pred EcCCCCeEEEEEC--CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc---CCceEEEEEe
Confidence 9998888888876 88999999965 6677666543 367899999999855552 5566666643
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=9.5e-05 Score=78.10 Aligned_cols=272 Identities=9% Similarity=-0.022 Sum_probs=172.0
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEE-------e-----cCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVT-------V-----DDENGPVTSVNWAPDGRHIAIGLNNCQVQL 209 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~-------~-----~~h~~~V~~v~~s~~g~~la~g~~dg~v~i 209 (458)
.+.++.... +.+..+...+-|.++|..++....... . .-....|.++...++|. |.+|+.++-|..
T Consensus 259 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~ 337 (781)
T 3v9f_A 259 YIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINF 337 (781)
T ss_dssp CEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEE
T ss_pred eEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEE
Confidence 455555544 556666665789999988776533322 0 01245799999998886 667887778999
Q ss_pred EeCCCceeeEEec--------CCCcccEEEEEeCC-CeEEEEeCCCcEEEEEccCCCeeEEEE----cccccceEeEEEc
Q 012679 210 WDSTANRQLRTLR--------GGHRSRVGSLAWNN-HILTTGGMDGLIINNDVRVRDHIVETY----RGHNQEVCGLKWS 276 (458)
Q Consensus 210 wd~~~~~~~~~~~--------~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~----~~h~~~v~~l~~s 276 (458)
++..+........ .-....|.++..+. ..|..|+.++-|..+|..+... ..+ ......|.++...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d 415 (781)
T 3v9f_A 338 ISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA--IYNKENRELLSNSVLCSLKD 415 (781)
T ss_dssp ECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE--ECC-----CCCSBEEEEEEC
T ss_pred eCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE--EEccCCCCCCCcceEEEEEC
Confidence 9977654332211 11235689998863 6778888777788998764321 111 1234678899888
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec---ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679 277 ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE---EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353 (458)
Q Consensus 277 pd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~ 353 (458)
+++.+.+ |+.++-|..+|..++.. ..+. .....|.++...+++. +.+.. . +-|..+|..+++..
T Consensus 416 ~~g~lWi-gt~~~Gl~~~~~~~~~~-------~~~~~~~~~~~~v~~i~~d~~g~-lwigt---~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 416 SEGNLWF-GTYLGNISYYNTRLKKF-------QIIELEKNELLDVRVFYEDKNKK-IWIGT---H-AGVFVIDLASKKVI 482 (781)
T ss_dssp TTSCEEE-EETTEEEEEECSSSCEE-------EECCSTTTCCCCEEEEEECTTSE-EEEEE---T-TEEEEEESSSSSCC
T ss_pred CCCCEEE-EeccCCEEEEcCCCCcE-------EEeccCCCCCCeEEEEEECCCCC-EEEEE---C-CceEEEeCCCCeEE
Confidence 7777544 67767788998765532 2221 2346788888887544 43322 4 56889998887654
Q ss_pred EEEeC------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC----CCCcEEEEEEcCCCCEEEEEeC
Q 012679 354 NSVDT------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG----HTSRVLFMAQSPDGCTVASAAA 423 (458)
Q Consensus 354 ~~~~~------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~----h~~~V~~l~~spdg~~l~s~s~ 423 (458)
..... ...|.++...+++...+.+ ..+-|..||..+.+.. .+.. ....|.++...++|.+.++ +.
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~ 557 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDSEGRFWIGT---FGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLA-TG 557 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECTTCCEEEEE---SSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEE-ET
T ss_pred ecccCcccccccceeEEEEEcCCCCEEEEE---cCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEE-EC
Confidence 43322 2568899999998877764 3345788887665433 3321 1356899999999986664 44
Q ss_pred CCcEEEEecCCC
Q 012679 424 DETLRFWNVFGA 435 (458)
Q Consensus 424 Dg~i~iW~~~~~ 435 (458)
+|.|..||....
T Consensus 558 ~Glv~~~d~~~~ 569 (781)
T 3v9f_A 558 EGLVCFPSARNF 569 (781)
T ss_dssp TEEEEESCTTTC
T ss_pred CCceEEECCCCC
Confidence 665577776544
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=0.00014 Score=76.81 Aligned_cols=276 Identities=12% Similarity=0.013 Sum_probs=169.4
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEec-----CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVD-----DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~-----~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
.+.++.... +++.+++.+ .|.+||..+++........ .....|.++...++|. |.+|+..+-|.++|..++.
T Consensus 212 ~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~ 289 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ 289 (781)
T ss_dssp SEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-
T ss_pred ceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe
Confidence 345554444 567777665 7999998877654332211 1245799999988876 5667775568899987765
Q ss_pred eeEEec-------------CCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEc----------ccccceEe
Q 012679 217 QLRTLR-------------GGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYR----------GHNQEVCG 272 (458)
Q Consensus 217 ~~~~~~-------------~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~----------~h~~~v~~ 272 (458)
...... .-....|.++..+ ...|..|+.++-|..++...... ..+. .....|.+
T Consensus 290 ~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~ 367 (781)
T 3v9f_A 290 FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTF--HTWSYSPTQMNESSLSNKVVSS 367 (781)
T ss_dssp --------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSC--EEEC----CCCSSCCSSSCEEE
T ss_pred eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc--eeeccCccccccCCCCCcceEE
Confidence 332111 1134578999886 45788888888889998765442 1221 12356889
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe
Q 012679 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC 352 (458)
Q Consensus 273 l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~ 352 (458)
+...++|. |..|+.++-|.+||......... ..........|.++...+++. +.+.. .++-|..+|..+++.
T Consensus 368 i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~---~~~~~~~~~~v~~i~~d~~g~-lWigt---~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 368 VCDDGQGK-LWIGTDGGGINVFENGKRVAIYN---KENRELLSNSVLCSLKDSEGN-LWFGT---YLGNISYYNTRLKKF 439 (781)
T ss_dssp EEECTTSC-EEEEEBSSCEEEEETTEEEEECC--------CCCSBEEEEEECTTSC-EEEEE---TTEEEEEECSSSCEE
T ss_pred EEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc---cCCCCCCCcceEEEEECCCCC-EEEEe---ccCCEEEEcCCCCcE
Confidence 98888776 45566666788899764322100 000012346788998887544 44422 556789999887754
Q ss_pred eEEEe---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-----CCcEEEEEEcCCCCEEEEEeCC
Q 012679 353 LNSVD---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-----TSRVLFMAQSPDGCTVASAAAD 424 (458)
Q Consensus 353 ~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-----~~~V~~l~~spdg~~l~s~s~D 424 (458)
..... ....|.++...+++...+.+ . +.|..|+..+++........ ...|.++...++|.+.+ |+.+
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~lwigt---~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~ 514 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKKIWIGT---H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFG 514 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSEEEEEE---T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESS
T ss_pred EEeccCCCCCCeEEEEEECCCCCEEEEE---C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcC
Confidence 33221 23568889888888766642 3 56889998776543322222 36799999999998766 4443
Q ss_pred CcEEEEecCCC
Q 012679 425 ETLRFWNVFGA 435 (458)
Q Consensus 425 g~i~iW~~~~~ 435 (458)
+-|..|+....
T Consensus 515 ~Gl~~~~~~~~ 525 (781)
T 3v9f_A 515 GGVGIYTPDMQ 525 (781)
T ss_dssp SCEEEECTTCC
T ss_pred CCEEEEeCCCC
Confidence 34666776543
No 272
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.58 E-value=8.9e-05 Score=69.20 Aligned_cols=236 Identities=10% Similarity=0.011 Sum_probs=145.5
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeE-EecCCCcccE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLR-TLRGGHRSRV 229 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~-~~~~~~~~~v 229 (458)
.-++..+....|+.+++..........+.+ ...+..++|.+.+..|... ...+.|..+++..+.... .+.. .-...
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~l~~p 81 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSP 81 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-CCSCC
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-CCCCc
Confidence 445667778899999998764211122221 2347789999865555444 556789999987663221 2221 11223
Q ss_pred EEEE--e-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCCc
Q 012679 230 GSLA--W-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNSV 304 (458)
Q Consensus 230 ~~l~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~~ 304 (458)
..++ | ++.++++-...+.|.++++..... ............++++.|.+..|..+.. .+.|...++.....
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--- 157 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--- 157 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---
Confidence 3444 4 345556666778999999875432 2223234456789999997666666553 57888888764332
Q ss_pred ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCC
Q 012679 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQN 383 (458)
Q Consensus 305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~ 383 (458)
.......-.....|+++|++..++.+-. ..+.|..+|+........+. .......+++.. ..++.+ ....+
T Consensus 158 ---~~~~~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywt-d~~~~ 229 (318)
T 3sov_A 158 ---FIIINSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWT-DWSTH 229 (318)
T ss_dssp ---EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEE-ETTTT
T ss_pred ---EEEEECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEE-ecCCC
Confidence 1111222344578999998888888866 77899999987543332222 234566777753 344443 44678
Q ss_pred cEEEEeCCCceeeEEEeC
Q 012679 384 QLTLWKYPSMVKMAELSG 401 (458)
Q Consensus 384 ~i~iwd~~~~~~~~~~~~ 401 (458)
.|..++..+++....+..
T Consensus 230 ~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 230 SILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEEEETTTCCSCEEEEC
T ss_pred eEEEEECCCCCceEEEeC
Confidence 899999887776666543
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.57 E-value=0.00029 Score=65.62 Aligned_cols=228 Identities=11% Similarity=-0.026 Sum_probs=142.0
Q ss_pred EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--C-CeEEEEeCCCcEEEEEccCC---CeeEEEEcccccce
Q 012679 197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N-HILTTGGMDGLIINNDVRVR---DHIVETYRGHNQEV 270 (458)
Q Consensus 197 ~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~-~~l~sg~~dg~i~vwd~~~~---~~~~~~~~~h~~~v 270 (458)
+|+.+.. ..|+..|+.+.+....+. .......++|+ + .++++-...+.|..+++... ......+...-...
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 4555544 468999998877655554 34567888885 3 45555566789999998751 21122232223456
Q ss_pred EeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 271 CGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 271 ~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
.++++.+.+..| ++-...+.|.+.|...... ...+.........+++.|.+..++.+..+ ..+.|...++..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~------~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG 152 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG 152 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCce------EEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC
Confidence 789998755544 5556678999999864322 11122233456899999988888887642 237888888754
Q ss_pred CCeeEEE-e-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679 350 GACLNSV-D-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 350 ~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
.....+ . .-.....+++++++..|+.+. ...+.|..+|+.......... ........|++. .+..+++-...+
T Consensus 153 -~~~~~~~~~~~~~P~gla~d~~~~~lY~~D-~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 153 -VDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp -CCEEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred -CCeEEEEECCCCCceEEEEeccCCEEEEEE-CCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 333333 2 235678999999888887764 356789999987432222222 123446778885 355566666678
Q ss_pred cEEEEecCCCCc
Q 012679 426 TLRFWNVFGAPQ 437 (458)
Q Consensus 426 ~i~iW~~~~~~~ 437 (458)
.|..++..++..
T Consensus 230 ~V~~~~~~~g~~ 241 (316)
T 1ijq_A 230 AIFSANRLTGSD 241 (316)
T ss_dssp EEEEEETTTCCC
T ss_pred eEEEEeCCCCcc
Confidence 888888765543
No 274
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.56 E-value=0.00061 Score=64.74 Aligned_cols=276 Identities=11% Similarity=0.098 Sum_probs=189.0
Q ss_pred ceeeccCCCeEEEEc----CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 145 NLLDWGSSNVLAIAL----GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 145 ~~~~~~~~~~la~~~----d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
..+...++..+++-. +..|.|.|+.++.......+.. -+.-.+|..+.||.-. ..+++|+|+++...++.
T Consensus 28 ~~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks 101 (494)
T 1bpo_A 28 STLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA 101 (494)
T ss_dssp TTEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE
T ss_pred ceeeeecCceEEEEecCCCCCeEEEEECCCCCcceeccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc
Confidence 334444556666554 3478889988766432333322 2445788888887765 66999999999999988
Q ss_pred ecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEccc----ccceEeEEEcCCCCEEEEEEC-------C
Q 012679 221 LRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGH----NQEVCGLKWSASGQQLASGGN-------D 288 (458)
Q Consensus 221 ~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~~l~~spd~~~l~sg~~-------d 288 (458)
+. ....|.--.| +.+.|+..+. ..|+.|++.....+++.+.-| ...|..-..+++.++++..|- .
T Consensus 102 ~~--~~e~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~ 178 (494)
T 1bpo_A 102 HT--MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 178 (494)
T ss_dssp EE--CSSCCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEE
T ss_pred ee--cCCCceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCccc
Confidence 87 4557777888 6777776654 579999998765566666654 346777888999999875542 4
Q ss_pred CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC--CCcEEEEeC-CCCCCeEEEEECCCC---C-e--eEEEeC-
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF--QSNLLATGG-GGGDRCIKFWNTHTG---A-C--LNSVDT- 358 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~ll~s~~-g~~d~~i~lwd~~~~---~-~--~~~~~~- 358 (458)
|.+.+|..+... .+.+++|.+....+....+ ...+++.+. ....+.+++-++... . . .+..+.
T Consensus 179 G~mQLYS~er~~-------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~ 251 (494)
T 1bpo_A 179 GAMQLYSVDRKV-------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (494)
T ss_dssp EEEEEEESTTCC-------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC
T ss_pred ceEEEeeccccc-------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee
Confidence 678899987654 4677888877666555422 123444432 112378999988543 1 1 111111
Q ss_pred ------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 359 ------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 359 ------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
..-..++..++....++..+ .-|.|.+||+.++..+..-+-....|..-+-.....=++.....|.|.--.+
T Consensus 252 fppe~~~DFPvamqvs~kygviyviT--K~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 252 FPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp CCTTSTTCCEEEEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred CCcccccCceeEEEecccCCEEEEEe--cCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence 23367888898888888765 7899999999999999888777777776666666556677778998888777
Q ss_pred CCCCcc
Q 012679 433 FGAPQV 438 (458)
Q Consensus 433 ~~~~~~ 438 (458)
.+...+
T Consensus 330 ~e~~iv 335 (494)
T 1bpo_A 330 EEENII 335 (494)
T ss_dssp CTTTHH
T ss_pred ccccch
Confidence 765543
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.52 E-value=0.00012 Score=68.34 Aligned_cols=231 Identities=10% Similarity=0.024 Sum_probs=143.0
Q ss_pred EEEEEecCCeEEEEeCCCcee-eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEe
Q 012679 197 HIAIGLNNCQVQLWDSTANRQ-LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCG 272 (458)
Q Consensus 197 ~la~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 272 (458)
+|+.+. ...|+..|+..... ...+.. ....+..++|+ +.++++-...+.|..+++.............-....+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 444443 35788999877631 111111 23456788885 4555666677889999987653211222222345678
Q ss_pred EEEcCCCC-EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC
Q 012679 273 LKWSASGQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA 351 (458)
Q Consensus 273 l~~spd~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~ 351 (458)
+++.+.+. ++++-...+.|.++++..... ...+.........+++.|.+..++.+..+ ..+.|...++....
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~ 156 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLR------KVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSS 156 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcE------EEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCC
Confidence 89987544 445555678999999875432 11222334456899999977788777531 35788888876433
Q ss_pred eeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679 352 CLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430 (458)
Q Consensus 352 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW 430 (458)
....+.. -.....+++++++..|+.+- ...+.|..+++........+.+.......+++.. +..+++-...+.|..+
T Consensus 157 ~~~~~~~~l~~Pnglavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 157 RFIIINSEIYWPNGLTLDYEEQKLYWAD-AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCccEEEEeccCCEEEEEE-CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 3222222 34578999999888887763 3678899999875333222333445567788753 3455555567888888
Q ss_pred ecCCCCcc
Q 012679 431 NVFGAPQV 438 (458)
Q Consensus 431 ~~~~~~~~ 438 (458)
+..++...
T Consensus 235 ~~~~G~~~ 242 (318)
T 3sov_A 235 NKYTGEGL 242 (318)
T ss_dssp ETTTCCSC
T ss_pred ECCCCCce
Confidence 88666543
No 276
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.52 E-value=0.00017 Score=67.25 Aligned_cols=233 Identities=9% Similarity=0.032 Sum_probs=135.1
Q ss_pred ceeeccC-CC-eEEEEcCCEEEEEECCCCCeeeEEEecC-----------------CCCCEEEEEEcC-CCCEEEEEecC
Q 012679 145 NLLDWGS-SN-VLAIALGSTVYLWDASDGTTSELVTVDD-----------------ENGPVTSVNWAP-DGRHIAIGLNN 204 (458)
Q Consensus 145 ~~~~~~~-~~-~la~~~d~~v~iwd~~~~~~~~~~~~~~-----------------h~~~V~~v~~s~-~g~~la~g~~d 204 (458)
..+.|++ ++ +++...++.|+.|+..+++......... ....+..+++.+ +| .|+++...
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~~ 100 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDCY 100 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEETT
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEECC
Confidence 3455654 44 6666678899999988766533221110 013588999998 55 46666555
Q ss_pred CeEEEEeCCCceeeEEecC----CCcccEEEEEeCC---CeEEEEeC-----------------CCcEEEEEccCCCeeE
Q 012679 205 CQVQLWDSTANRQLRTLRG----GHRSRVGSLAWNN---HILTTGGM-----------------DGLIINNDVRVRDHIV 260 (458)
Q Consensus 205 g~v~iwd~~~~~~~~~~~~----~~~~~v~~l~~~~---~~l~sg~~-----------------dg~i~vwd~~~~~~~~ 260 (458)
+.|..+|..++.. ..+.. ........+++++ .+.++-.. +|.|..+|..++..
T Consensus 101 ~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-- 177 (322)
T 2fp8_A 101 YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET-- 177 (322)
T ss_dssp TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE--
T ss_pred CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE--
Confidence 6688898776542 22211 0113456777743 44444322 36788888765442
Q ss_pred EEEcccccceEeEEEcCCCCEEEEE-ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC---
Q 012679 261 ETYRGHNQEVCGLKWSASGQQLASG-GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG--- 336 (458)
Q Consensus 261 ~~~~~h~~~v~~l~~spd~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g--- 336 (458)
..+.........++|+++++.|..+ +..+.|.+|++....... ...... ..+ ...+++.+++. ++++..+
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~---~~g-P~gi~~d~~G~-l~va~~~~~~ 251 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVK---IPN-PGNIKRNADGH-FWVSSSEELD 251 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEE---CSS-EEEEEECTTSC-EEEEEEEETT
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEe---CCC-CCCeEECCCCC-EEEEecCccc
Confidence 2222222345679999999866555 556899999987532211 111111 123 67889999875 4444321
Q ss_pred -----CCCCeEEEEECCCCCeeEEEeCC-----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 337 -----GGDRCIKFWNTHTGACLNSVDTG-----SQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 337 -----~~d~~i~lwd~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
...+.|..+|. .++.+..+... ..++.+++ .++ .|+++ +...+.|.++++.
T Consensus 252 ~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~-~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIG-TLFHGSVGILVYD 312 (322)
T ss_dssp SSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEE-CSSCSEEEEEEC-
T ss_pred ccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEe-ecCCCceEEEecc
Confidence 01456888886 47777777543 24666666 344 44443 3457788888865
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.50 E-value=0.00032 Score=67.74 Aligned_cols=232 Identities=11% Similarity=-0.035 Sum_probs=145.9
Q ss_pred CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CC-eEEEEeCCCcEEEEEccCCC---eeEEEEcccccc
Q 012679 196 RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NH-ILTTGGMDGLIINNDVRVRD---HIVETYRGHNQE 269 (458)
Q Consensus 196 ~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~sg~~dg~i~vwd~~~~~---~~~~~~~~h~~~ 269 (458)
.+|+.+. ...|+..++........+. ....+..++|+ .. ++++-...+.|..+++.... ............
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred ceeEEec-cceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 3455444 4588999988765544443 45677889985 34 45555567889888886521 112333334456
Q ss_pred eEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679 270 VCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH 348 (458)
Q Consensus 270 v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~ 348 (458)
..++++.+. +++.++-...+.|.+.++..... ...+.........|++.|.+..++.+-.+ ..+.|...++.
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~d 233 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN 233 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSE------EEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETT
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCce------EEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCC
Confidence 788999884 44455555678899999875432 22222233457899999988888887642 34689999886
Q ss_pred CCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEEEEEEcCCCCEEEEEeCCC
Q 012679 349 TGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 349 ~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
.......+.. -.....+++++++..|+.+- ...+.|..+|+........+.. .-.....|++. .+.++++-...+
T Consensus 234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred CCccEEEEECCCCceEEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 5444333333 25688999999888888764 3567899999875433332322 23445677773 344556666678
Q ss_pred cEEEEecCCCCccc
Q 012679 426 TLRFWNVFGAPQVI 439 (458)
Q Consensus 426 ~i~iW~~~~~~~~~ 439 (458)
.|..++..++....
T Consensus 312 ~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 312 AIFSANRLTGSDVN 325 (400)
T ss_dssp SEEEEESSSCCCCE
T ss_pred eEEEEEcCCCCceE
Confidence 88888865554443
No 278
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.49 E-value=0.0002 Score=66.43 Aligned_cols=222 Identities=13% Similarity=0.068 Sum_probs=130.9
Q ss_pred ccceeeccC-CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-C-eEEEEeCCCceee
Q 012679 143 YLNLLDWGS-SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-C-QVQLWDSTANRQL 218 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-g-~v~iwd~~~~~~~ 218 (458)
....+.|++ ++++.+. .++.|+.||... +....... ...+..+++.++|+++++.... + .|..+|..+++..
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 455677866 4566665 578999999775 43333332 3468999999999965554332 2 4777787777654
Q ss_pred EEecCCCcccEEEEE-eCCCeEEEE-eCCCcEEEEEccCCCeeEEEEc---------ccccceEeEEEcCCCCEEEEE-E
Q 012679 219 RTLRGGHRSRVGSLA-WNNHILTTG-GMDGLIINNDVRVRDHIVETYR---------GHNQEVCGLKWSASGQQLASG-G 286 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~-~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~---------~h~~~v~~l~~spd~~~l~sg-~ 286 (458)
.............++ |.+..++.. ..++.|+++|...+...+.... ..-.....+ +++++.|..+ .
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 332211222223333 444444444 4688999999765321111110 111234555 7888766554 4
Q ss_pred CCCcEEEEeCCC-CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE--EEeCC-CCe
Q 012679 287 NDNLLHIWDRSM-ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN--SVDTG-SQV 362 (458)
Q Consensus 287 ~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--~~~~~-~~v 362 (458)
..+.|..+|+.. +... . ...+.. ......+++.+++ .++++.. ..+.|.++|.. |+... .+... ...
T Consensus 187 ~~~~I~~~~~~~~g~~~-~---~~~~~~-~~~P~gi~vd~dG-~l~va~~--~~~~V~~~~~~-G~~~~~~~~~~~~~~p 257 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPG-E---PEIFVE-QTNIDDFAFDVEG-NLYGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGS 257 (306)
T ss_dssp TTTEEEEEEBCTTSCBC-C---CEEEEE-SCCCSSEEEBTTC-CEEEECB--TTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred CCCEEEEEEeCCCCCCC-c---cEEEec-cCCCCCeEECCCC-CEEEEeC--CCCeEEEECCC-CCEEEEeecccccCCc
Confidence 578899999875 2211 1 111111 1345678999976 4555543 56789999975 66533 33333 568
Q ss_pred EEEEEc---CCCCeEEEEec
Q 012679 363 CALLWN---KNERELLSSHG 379 (458)
Q Consensus 363 ~~~~~s---~~~~~l~~~~g 379 (458)
++++|. ++++.|+++..
T Consensus 258 ~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 258 TAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEEECCSTTTTTEEEEEEC
T ss_pred eEEEEecccCCCCEEEEECC
Confidence 999998 88888877653
No 279
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.44 E-value=1.9e-05 Score=81.73 Aligned_cols=262 Identities=13% Similarity=0.075 Sum_probs=144.7
Q ss_pred EEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCC-----------eEEEEeCCCcee--eEEecCCCcccE
Q 012679 164 YLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNC-----------QVQLWDSTANRQ--LRTLRGGHRSRV 229 (458)
Q Consensus 164 ~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg-----------~v~iwd~~~~~~--~~~~~~~~~~~v 229 (458)
..+|..++++..+..+.. . -.++++.+ +|+.++.|+.+. .+.+||..+++. +..+...+....
T Consensus 169 ~~~dp~~~~W~~~~~~P~--~-~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~ 245 (656)
T 1k3i_A 169 TAPQPGLGRWGPTIDLPI--V-PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC 245 (656)
T ss_dssp CCCCTTSCEEEEEEECSS--C-CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS
T ss_pred ccCCCCCCeeeeeccCCC--C-ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc
Confidence 334455666665555543 1 23566777 888888887543 588999988753 333332233333
Q ss_pred EEEE--eCCCeEEEEeC-CCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEE-CC-----CcEEEEeCCCC
Q 012679 230 GSLA--WNNHILTTGGM-DGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGG-ND-----NLLHIWDRSMA 299 (458)
Q Consensus 230 ~~l~--~~~~~l~sg~~-dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~-~d-----g~i~iwd~~~~ 299 (458)
.+++ .++.+++.|+. +..+.+||..+..... ..+.. ...-.++...+++++++.|+ .+ ..+.+||..+.
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 3333 47889999984 4589999998764311 11111 11223455667999999998 44 57899998765
Q ss_pred CCCCcc----eeeeeecccccceeEEEecCCCCcEEEEeCC-------CCCCeEEEEECCCCCeeEEEeCC---------
Q 012679 300 SSNSVT----QWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-------GGDRCIKFWNTHTGACLNSVDTG--------- 359 (458)
Q Consensus 300 ~~~~~~----~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g-------~~d~~i~lwd~~~~~~~~~~~~~--------- 359 (458)
.-.... .++..- .+. .++.. +..+++.++. .....+..||..+..........
T Consensus 325 ~W~~~~~~~~~p~~~~-~~~-----~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~ 397 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTA-DKQ-----GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 397 (656)
T ss_dssp EEEEETTSCSGGGCCC-CTT-----GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred cceeCCCccccccccc-ccc-----ceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCC
Confidence 431100 000000 010 11112 2333343320 02346788998887654333211
Q ss_pred -CCeEEEEEcCCCCeEEEEecCCC-------C---cEEEEeCCCceeeEEE--eCCCCcE-EEEEEcCCCCEEEEEeCC-
Q 012679 360 -SQVCALLWNKNERELLSSHGFTQ-------N---QLTLWKYPSMVKMAEL--SGHTSRV-LFMAQSPDGCTVASAAAD- 424 (458)
Q Consensus 360 -~~v~~~~~s~~~~~l~~~~g~~d-------~---~i~iwd~~~~~~~~~~--~~h~~~V-~~l~~spdg~~l~s~s~D- 424 (458)
..-.++.+...+..|++..|... . .|.+||..+..-.... ..+..+. .+++..|+|++++.||.+
T Consensus 398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~ 477 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR 477 (656)
T ss_dssp CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCccc
Confidence 12345555554555555545321 1 5778887765543322 2233333 345677899999999864
Q ss_pred ----------CcEEEEecCCCC
Q 012679 425 ----------ETLRFWNVFGAP 436 (458)
Q Consensus 425 ----------g~i~iW~~~~~~ 436 (458)
..+.+||.....
T Consensus 478 ~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 478 GIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCTTCCCSBCCCCEEEEGGGTE
T ss_pred CcCcCCCCcccceEEEcCCCCc
Confidence 468899986543
No 280
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.39 E-value=0.0015 Score=61.11 Aligned_cols=269 Identities=9% Similarity=0.010 Sum_probs=145.6
Q ss_pred ccceeecc-CCCeEEEEcCCEEEEEECCCCC-eeeEEE-ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 143 YLNLLDWG-SSNVLAIALGSTVYLWDASDGT-TSELVT-VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 143 ~~~~~~~~-~~~~la~~~d~~v~iwd~~~~~-~~~~~~-~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
.+..+.+. ++.+++++..+.|+. ..+.|+ ...+.. .......+.+|.+.+ +..++ ++..|.|.. ....++.-.
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCE
T ss_pred cEEEEEECCCCcEEEEcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCce
Confidence 35566664 466777888887644 334443 322211 112244689999986 44444 456665544 333344333
Q ss_pred EecC--CCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679 220 TLRG--GHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 220 ~~~~--~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~ 296 (458)
.+.. .+...+..+.+ ++..++.++.+|.|..- ...+..-......+...+..+.+.+++.+++.+...+..+-+|-
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~ 191 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP 191 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC
Confidence 3321 13345667766 33444445556654321 12232222333345567889999999988877654433333442
Q ss_pred CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-----CCCeEEEEEcCCC
Q 012679 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-----GSQVCALLWNKNE 371 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-----~~~v~~~~~s~~~ 371 (458)
. +.. . ...-......+..+++.+++ .+++.+ .+|.+++.+...|+.-..+.. ...+..+.+.+++
T Consensus 192 g-G~t---W--~~~~~~~~~~~~~~~~~~~g-~~~~~~---~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 192 G-QTA---W--EPHNRTTSRRLHNMGFTPDG-RLWMIV---NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp T-CSS---C--EEEECCSSSCEEEEEECTTS-CEEEEE---TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred C-CCc---e--eECCCCCCCccceeEECCCC-CEEEEe---CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence 1 111 0 11112345677889998865 455544 577777765332333222221 2347889999877
Q ss_pred CeEEEEecCCCCcEEEEeCCCceeeEEEe---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 372 RELLSSHGFTQNQLTLWKYPSMVKMAELS---GHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
..+++ | .++.| ++....++.-..+. .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus 262 ~~~~~--g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 262 EVWLA--G-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp CEEEE--E-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEEEE--e-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 76665 3 35666 44444444333333 234567888887555 466678899766554
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.36 E-value=7.9e-05 Score=78.26 Aligned_cols=242 Identities=10% Similarity=0.030 Sum_probs=131.7
Q ss_pred CEEEEEEc-CCCCEEEEEecC-C----eEEEEeCCCc-eeeEEecCCCcccEEEEEe--CCCeEEEEeCC-----CcEEE
Q 012679 185 PVTSVNWA-PDGRHIAIGLNN-C----QVQLWDSTAN-RQLRTLRGGHRSRVGSLAW--NNHILTTGGMD-----GLIIN 250 (458)
Q Consensus 185 ~V~~v~~s-~~g~~la~g~~d-g----~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d-----g~i~v 250 (458)
.+...+|| |||++||.+... | .|+++|+.++ +.+... -......++| +++.|+....+ ..|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 999999876543 3 4999999998 633210 1112345778 46666666554 26888
Q ss_pred EEccCCCee-EEEEc-ccccceEeEEEcCCCCEEEEEEC---CCcEEEEeCCCCCCCCcceeeeeec-ccccceeEEEec
Q 012679 251 NDVRVRDHI-VETYR-GHNQEVCGLKWSASGQQLASGGN---DNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWC 324 (458)
Q Consensus 251 wd~~~~~~~-~~~~~-~h~~~v~~l~~spd~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~ 324 (458)
+++.++... ...+. ........+.|+|||++|+..+. ...|.++|+..+..... +..+. .......++.|+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~---~~~l~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT---LEIVRPREKGVRYDVQMH 328 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC---EEESSCCCTTCCEEEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce---eEEeecCCCCceEEEeee
Confidence 888765421 12222 22334668899999999887663 44688889876532100 02222 233445555554
Q ss_pred CCCCcEEEEeCC--CCCCeEEEEECCCC-CeeE-EEeCCCC--eEEEEEcCCCCeEEEEecCCCCc--EEEEeC------
Q 012679 325 PFQSNLLATGGG--GGDRCIKFWNTHTG-ACLN-SVDTGSQ--VCALLWNKNERELLSSHGFTQNQ--LTLWKY------ 390 (458)
Q Consensus 325 p~~~~ll~s~~g--~~d~~i~lwd~~~~-~~~~-~~~~~~~--v~~~~~s~~~~~l~~~~g~~d~~--i~iwd~------ 390 (458)
. +..+++.... .....|..+|+.++ .... .+..... +..+.+ .+..|+.+. ..++. |.++++
T Consensus 329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~-~~~g~~~l~~~dl~~~~~~ 404 (751)
T 2xe4_A 329 G-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAG-RRAGLTRIWTMMADSQDGV 404 (751)
T ss_dssp T-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEE-EETTEEEEEEEECCTTTSC
T ss_pred e-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEE-EeCCEEEEEEEeccccccc
Confidence 4 5666655431 12347888888753 3222 3333333 344444 455665543 34554 556665
Q ss_pred -CCceeeEEEeCC-CCcEEEEEE----cCCCC-EEEEEeCC---CcEEEEecCCCC
Q 012679 391 -PSMVKMAELSGH-TSRVLFMAQ----SPDGC-TVASAAAD---ETLRFWNVFGAP 436 (458)
Q Consensus 391 -~~~~~~~~~~~h-~~~V~~l~~----spdg~-~l~s~s~D---g~i~iW~~~~~~ 436 (458)
..++....+.-. ...+..+.+ ++++. ++++.+.. ..+..+|+.+++
T Consensus 405 ~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 405 FKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 333313333211 122333432 34554 44444433 356667765543
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.35 E-value=0.00024 Score=69.37 Aligned_cols=235 Identities=8% Similarity=-0.016 Sum_probs=139.5
Q ss_pred CEEEEEEcCC--CCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCC-----cEEEEEccC
Q 012679 185 PVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDG-----LIINNDVRV 255 (458)
Q Consensus 185 ~V~~v~~s~~--g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg-----~i~vwd~~~ 255 (458)
....|+|+|+ +..|.++...+.|+.+|..++....... .......++++ ++ |+.+...+ .+...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 4556666555889999998777654433 44567888884 56 44444321 233333322
Q ss_pred CCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679 256 RDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 256 ~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
.......+. ......+++++| ++.++++-..++.|+.+|...+... ..+.... ....-..++|+|++..++++-
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~---~~~~~~~-~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT---EEEVMMD-TKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE---EEEEECS-CCSSCEEEEECTTSSEEEEEE
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE---EEEeccC-CCCCcccEEEeCCCCEEEEEe
Confidence 211011111 234456788999 6766666666788999998754320 0011111 112234699999988788776
Q ss_pred CCCCCCeEEEEECC--CCCee--EEEeC----------------CCCeEEEEE---------cCCCCeEEEEecCCCCcE
Q 012679 335 GGGGDRCIKFWNTH--TGACL--NSVDT----------------GSQVCALLW---------NKNERELLSSHGFTQNQL 385 (458)
Q Consensus 335 ~g~~d~~i~lwd~~--~~~~~--~~~~~----------------~~~v~~~~~---------s~~~~~l~~~~g~~d~~i 385 (458)
. ..+.|+.++.. ++... ..+.. -.....+++ .+++..+++ ....+.|
T Consensus 292 ~--~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva--D~~n~~I 367 (433)
T 4hw6_A 292 N--GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC--DRDSHTV 367 (433)
T ss_dssp T--TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE--ETTTTEE
T ss_pred C--CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE--ECCCCEE
Confidence 5 67899998865 33211 11111 123567888 566665555 4467789
Q ss_pred EEEeCCCceeeEEEeCC------------------CCcEEEEEEc-CCCCEEEEEeCCCcEEEEecC
Q 012679 386 TLWKYPSMVKMAELSGH------------------TSRVLFMAQS-PDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 386 ~iwd~~~~~~~~~~~~h------------------~~~V~~l~~s-pdg~~l~s~s~Dg~i~iW~~~ 433 (458)
+.++. ++. +.++.+. -.....|+++ ++|.++++-.....|+..++.
T Consensus 368 ~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99984 553 3333321 1236789999 677777666667788887763
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.33 E-value=0.0012 Score=69.09 Aligned_cols=235 Identities=10% Similarity=0.013 Sum_probs=144.7
Q ss_pred cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCc----eeeEEecCC
Q 012679 150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTAN----RQLRTLRGG 224 (458)
Q Consensus 150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~----~~~~~~~~~ 224 (458)
....++..+....|+..++.......+. .....+..|+|.+.+..|+.. ...+.|+.+++... .....+..
T Consensus 393 ~~~p~Ll~an~~~Ir~i~l~~~~~~~l~---~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~- 468 (791)
T 3m0c_C 393 GSIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR- 468 (791)
T ss_dssp TSCCEEEEECBSSEEEECTTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-
T ss_pred ccccccccccccceeEeeccCCcceeee---cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec-
Confidence 3345667777788888888876653332 235568899999865555544 45678988888753 22222221
Q ss_pred CcccEEEEE--eCC-CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCC
Q 012679 225 HRSRVGSLA--WNN-HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMA 299 (458)
Q Consensus 225 ~~~~v~~l~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~ 299 (458)
.......|+ |.+ +++++-...+.|.+.++..... ...+........+|++.|.+.+|+.... .+.|.+.++...
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 223333444 444 5666666788999999975543 2233334456889999998666666553 267888887654
Q ss_pred CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcCCCCeEEE
Q 012679 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNERELLS 376 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~ 376 (458)
.. ...+...-.....|++.+.+..|+++-. ..+.|...++........+... ....+|++. +..|+.
T Consensus 548 ~~------~~lv~~~l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYw 617 (791)
T 3m0c_C 548 DI------YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFW 617 (791)
T ss_dssp CE------EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEE
T ss_pred ce------EEEEeCCCCCceEEEEecCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEE
Confidence 32 1222223356789999988888888765 6789999998655544444332 234566653 445555
Q ss_pred EecCCCCcEEEEeCCCceeeEEEe
Q 012679 377 SHGFTQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~~~~~ 400 (458)
+ ....+.|...+..+++.+..+.
T Consensus 618 t-D~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 618 T-DIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp E-ETTTTEEEEEETTTCCCCEEEE
T ss_pred E-ECCCCEEEEEeCCCCcceEEee
Confidence 4 3456788888876765555543
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.00029 Score=68.72 Aligned_cols=235 Identities=9% Similarity=0.040 Sum_probs=137.9
Q ss_pred CEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeC-CC----cEEEEEccCC
Q 012679 185 PVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGM-DG----LIINNDVRVR 256 (458)
Q Consensus 185 ~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~-dg----~i~vwd~~~~ 256 (458)
....|+++| ++..|.++...+.|+.+|+..+....... .......++++ ++.|+.+.. ++ .+.+.+....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 467899998 46667777665889999988766544333 44567788885 564555543 22 3444443322
Q ss_pred CeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679 257 DHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
......+. ......+++++| ++.++++-..++.|..++....... .+..... ......++|+|++..++++..
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~----~~~~~~~-~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT----PLFTIQD-SGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE----EEEECSS-SSCCEEEEECTTSSEEEEEET
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEEEcCC-CCcceeEEEcCCCCEEEEEEC
Confidence 21112222 133467788999 6776666667789999998754320 1122211 234578999999887877765
Q ss_pred CCCCCeEEEEECCC--CCe--eEEEeCC----------------CCeE-EEEEc--------CCCCeEEEEecCCCCcEE
Q 012679 336 GGGDRCIKFWNTHT--GAC--LNSVDTG----------------SQVC-ALLWN--------KNERELLSSHGFTQNQLT 386 (458)
Q Consensus 336 g~~d~~i~lwd~~~--~~~--~~~~~~~----------------~~v~-~~~~s--------~~~~~l~~~~g~~d~~i~ 386 (458)
..+.|..++... +.. ...+... .... .++.. +++..+++ ....+.|+
T Consensus 290 --~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva--D~~n~~I~ 365 (430)
T 3tc9_A 290 --NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC--DRENHCIR 365 (430)
T ss_dssp --TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE--EGGGTEEE
T ss_pred --CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE--ECCCcEEE
Confidence 778999987653 221 1122110 1122 44443 23444444 33567888
Q ss_pred EEeCCCceeeEEEeCC---------C---------CcEEEEEEcCC-CCEEEEEeCCCcEEEEecC
Q 012679 387 LWKYPSMVKMAELSGH---------T---------SRVLFMAQSPD-GCTVASAAADETLRFWNVF 433 (458)
Q Consensus 387 iwd~~~~~~~~~~~~h---------~---------~~V~~l~~spd-g~~l~s~s~Dg~i~iW~~~ 433 (458)
.++ +++... .+.+. . .....|+++|+ |.++++-.....|+.+++.
T Consensus 366 ~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 888 455433 33221 1 24789999994 6666655566778877653
No 285
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.29 E-value=0.0037 Score=63.86 Aligned_cols=233 Identities=6% Similarity=-0.073 Sum_probs=147.5
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCCCcccEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGGHRSRVG 230 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 230 (458)
..++..+..+.|+..++++........+.+ -..+..|+|++.+..|..+ ..++.|..+++........+.. ......
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~ 83 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-GLDYPE 83 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCC
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcc
Confidence 456677788999999998766433333322 3568899999976666554 4578899999876544333332 212334
Q ss_pred EEE--eC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCCcc
Q 012679 231 SLA--WN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 231 ~l~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~~~ 305 (458)
.|+ |. +++.++-...+.|.+.++..... .......-....+|++.|....|..... .+.|...++.....
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~---- 158 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER---- 158 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce----
Confidence 444 44 45556666678899999875543 2222233455789999996666655543 46787777765443
Q ss_pred eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcE
Q 012679 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQL 385 (458)
Q Consensus 306 ~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i 385 (458)
..+...-.....|++++++..|+.+-. ..+.|...|+.................+++.. ..++.+ ....+.|
T Consensus 159 ---~~l~~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~t-D~~~~~I 230 (628)
T 4a0p_A 159 ---TTLVPNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWT-DWSRRSI 230 (628)
T ss_dssp ---EEEECSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEE-ETTTTEE
T ss_pred ---EEEECCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEe-cCCCCEE
Confidence 222223455678999998888888866 77899999997654422223334566777765 345544 3457788
Q ss_pred EEEeCCCceeeEEE
Q 012679 386 TLWKYPSMVKMAEL 399 (458)
Q Consensus 386 ~iwd~~~~~~~~~~ 399 (458)
...|..+++....+
T Consensus 231 ~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 231 ERANKTSGQNRTII 244 (628)
T ss_dssp EEEETTTCCSCEEE
T ss_pred EEEECCCCCceEEE
Confidence 88887666544333
No 286
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.28 E-value=0.00021 Score=75.09 Aligned_cols=237 Identities=14% Similarity=0.060 Sum_probs=129.0
Q ss_pred ccceeecc-C-CCeEEEEcC--C----EEEEEECCCC-CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-----CeEE
Q 012679 143 YLNLLDWG-S-SNVLAIALG--S----TVYLWDASDG-TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-----CQVQ 208 (458)
Q Consensus 143 ~~~~~~~~-~-~~~la~~~d--~----~v~iwd~~~~-~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-----g~v~ 208 (458)
.+....|+ + +..++.+.+ | .|+++|+.++ +... ..+.. ....++|+|||+.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 56678899 7 445554432 2 5999999998 6311 01111 13468899999988888765 2688
Q ss_pred EEeCCCcee--eEEecCCCcccEEEEEe--CCCeEEEEeC---CCcEEEEEccCCCeeE--EEE-cccccceEeEEEcCC
Q 012679 209 LWDSTANRQ--LRTLRGGHRSRVGSLAW--NNHILTTGGM---DGLIINNDVRVRDHIV--ETY-RGHNQEVCGLKWSAS 278 (458)
Q Consensus 209 iwd~~~~~~--~~~~~~~~~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~~~~~~--~~~-~~h~~~v~~l~~spd 278 (458)
++++.++.. ...+..........+.| ++++|+..+. ...|+++|+.++.... ..+ .........+.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~- 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG- 329 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-
Confidence 888877642 22332223344567777 5677665542 3468888987652112 222 23344455555544
Q ss_pred CCEEEEEEC-C----CcEEEEeCCCCCCCCcceeeee-eccccc--ceeEEEecCCCCcEEEEeCCCCCCe--EEEEEC-
Q 012679 279 GQQLASGGN-D----NLLHIWDRSMASSNSVTQWLHR-LEEHTS--AVKAIAWCPFQSNLLATGGGGGDRC--IKFWNT- 347 (458)
Q Consensus 279 ~~~l~sg~~-d----g~i~iwd~~~~~~~~~~~~~~~-~~~h~~--~v~~l~~~p~~~~ll~s~~g~~d~~--i~lwd~- 347 (458)
|..|+..++ + ..|..+|+..... ... +..+.. .+..+.+. +..++++.. .++. |.++|+
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~------~~~~li~~~~~~~l~~~~~~--~~~lv~~~~--~~g~~~l~~~dl~ 399 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSD------WSHVLVDHSEDVFMESIAVR--SNYLVVAGR--RAGLTRIWTMMAD 399 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTC------CCCEEECCCSSEEEEEEEEC--SSEEEEEEE--ETTEEEEEEEECC
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCccc------ceeeEECCCCCcEEEEEEEE--CCEEEEEEE--eCCEEEEEEEecc
Confidence 555544443 3 2577777654211 112 222332 34455554 567777665 6665 556675
Q ss_pred ------CCCCeeEEEeCCCC--eEEEEE----cCCCCeEEEEecCC--CCcEEEEeCCCce
Q 012679 348 ------HTGACLNSVDTGSQ--VCALLW----NKNERELLSSHGFT--QNQLTLWKYPSMV 394 (458)
Q Consensus 348 ------~~~~~~~~~~~~~~--v~~~~~----s~~~~~l~~~~g~~--d~~i~iwd~~~~~ 394 (458)
.+++....+..... +..+.+ ++++..++...... -..+..+|+.+++
T Consensus 400 ~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 400 SQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 34441444443333 333333 34666555433222 2467778877664
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.24 E-value=0.0018 Score=67.86 Aligned_cols=230 Identities=12% Similarity=-0.014 Sum_probs=141.6
Q ss_pred EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCC---eeEEEEcccccce
Q 012679 197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD---HIVETYRGHNQEV 270 (458)
Q Consensus 197 ~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~h~~~v 270 (458)
+|+.+. ...|+..++........+. ....+..|+|+ +.++++-...+.|+.+++.... .....+.......
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred cccccc-ccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 444443 3468888887665444443 44566788884 3455565667888888887531 1123333344567
Q ss_pred EeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 271 CGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 271 ~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
.+|++.+.++.| ++-...+.|.+.++..... ...+.........|++.|....|+.+-.| ..+.|...++..
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG 546 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG 546 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------EEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCC
Confidence 789998877555 4555678999999875432 12222334457899999987888887642 237899999875
Q ss_pred CCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679 350 GACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVLFMAQSPDGCTVASAAADET 426 (458)
Q Consensus 350 ~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~ 426 (458)
......+... .....|++++.+..|+.+- ...+.|..+++........+.. .-....+|++..+ .++++-...+.
T Consensus 547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD-~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~ 624 (791)
T 3m0c_C 547 VDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA 624 (791)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTE
T ss_pred CceEEEEeCCCCCceEEEEecCCCeEEEEe-CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCE
Confidence 5444444333 5688999998888888764 3567899999865444333332 2234557777433 34444445677
Q ss_pred EEEEecCCCCcc
Q 012679 427 LRFWNVFGAPQV 438 (458)
Q Consensus 427 i~iW~~~~~~~~ 438 (458)
|...+..++..+
T Consensus 625 I~~~dk~tG~~~ 636 (791)
T 3m0c_C 625 IFSANRLTGSDV 636 (791)
T ss_dssp EEEEETTTCCCC
T ss_pred EEEEeCCCCcce
Confidence 777776655443
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.19 E-value=1.7e-05 Score=82.43 Aligned_cols=244 Identities=8% Similarity=-0.044 Sum_probs=143.1
Q ss_pred CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCC----ceeeEEecCCCcc
Q 012679 153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTA----NRQLRTLRGGHRS 227 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~----~~~~~~~~~~~~~ 227 (458)
.++..+..+.|+..++.+.+...+ +. ....+..|+|.+.+..|+.+. ..+.|+.+++.. ......+.. ...
T Consensus 378 ~~ll~~~~~~I~~id~~~~~~~~~--~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~ 453 (699)
T 1n7d_A 378 AYLFFTNRHEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQ 453 (699)
T ss_dssp CCBCCCCTTC-CEECTTSCCEECC--SC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC-
T ss_pred eeEEecCccceEEEeCCCCcceee--ec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCC
Confidence 344455567888888887664222 22 234567899998777676654 457899999875 222222211 112
Q ss_pred cEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCC
Q 012679 228 RVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSN 302 (458)
Q Consensus 228 ~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~ 302 (458)
....|+++ +.++++-...+.|.++++..... ...+........+|++.|.+.+|+.+.. .+.|.++++.....
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~- 531 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI- 531 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-
Confidence 23345543 45555556678899999875432 2222222345678999997665554432 26788777654322
Q ss_pred CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEEec
Q 012679 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSSHG 379 (458)
Q Consensus 303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g 379 (458)
...+...-.....|+|+|++..|+++-. ..+.|..+++........+.. ......+++..+ .|+.+ .
T Consensus 532 -----~~l~~~~l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywt-d 601 (699)
T 1n7d_A 532 -----YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWT-D 601 (699)
T ss_dssp -----CEESCSSCSSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEE-C
T ss_pred -----eEEEeCCCCCccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEE-e
Confidence 1111122344578999998888888876 678999999865333322221 123445555443 55544 3
Q ss_pred CCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEc
Q 012679 380 FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS 412 (458)
Q Consensus 380 ~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~s 412 (458)
...+.|..++..+++.+..+......+..|++.
T Consensus 602 ~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 602 IINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp STTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred CCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 467899999988888877765433334455443
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.11 E-value=0.007 Score=61.82 Aligned_cols=229 Identities=10% Similarity=0.000 Sum_probs=147.9
Q ss_pred EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeE
Q 012679 197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273 (458)
Q Consensus 197 ~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l 273 (458)
+|+.+ ....|+..|+.+......+....-..+..|+|+ +.++++-..++.|..+++..... ...+........++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 55554 556899999987654444432234567788885 34555666778999998875432 22333223457789
Q ss_pred EEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe
Q 012679 274 KWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC 352 (458)
Q Consensus 274 ~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~ 352 (458)
++.+.+..| ++-...+.|.+.++..... ...+...-.....|++.|....++.+--| ..+.|...++.....
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~------~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~ 158 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHR------QVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSER 158 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTC------EEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcE------EEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCce
Confidence 998765555 4545578899999875432 11122333456899999977888877532 357888888876554
Q ss_pred eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 353 LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 353 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
...+........+++++++..|+.+- ...+.|..+++..... ..+.........|++.. +..+++-...+.|...|.
T Consensus 159 ~~l~~~~~~P~GlalD~~~~~LY~aD-~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKRRLYWTD-LDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCcceEEEccccCEEEEEE-CCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 44445556789999999988888764 3577899999875433 23333334456788865 445555555788888886
Q ss_pred CCCCc
Q 012679 433 FGAPQ 437 (458)
Q Consensus 433 ~~~~~ 437 (458)
.++..
T Consensus 236 ~tg~~ 240 (628)
T 4a0p_A 236 TSGQN 240 (628)
T ss_dssp TTCCS
T ss_pred CCCCc
Confidence 65543
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.08 E-value=0.0028 Score=61.74 Aligned_cols=236 Identities=8% Similarity=0.044 Sum_probs=126.6
Q ss_pred cceeeccC----CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-----eEEEEeCCC
Q 012679 144 LNLLDWGS----SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTA 214 (458)
Q Consensus 144 ~~~~~~~~----~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~ 214 (458)
...+.|++ ++|+.+-..+.|+.+|..++++..+ .........++|+++|+ |+++...+ .+...+...
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~---~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK---TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE---CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe---ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 44677775 4455554458999999988875332 33455689999999999 55554322 233333222
Q ss_pred ceee-EEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEE-ECC
Q 012679 215 NRQL-RTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASG-GND 288 (458)
Q Consensus 215 ~~~~-~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg-~~d 288 (458)
+... ..+. .-.....++++ +.++++-..++.|+.+|..++......+. +....-..++|+|+++.|..+ ...
T Consensus 217 ~~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 217 GFTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp TTCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred Ceecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 1110 1111 11223344553 45555555678899999875543112211 112223469999999955544 456
Q ss_pred CcEEEEeCCCC--CCCCcceeeeeec-----------ccccceeEEEe---------cCCCCcEEEEeCCCCCCeEEEEE
Q 012679 289 NLLHIWDRSMA--SSNSVTQWLHRLE-----------EHTSAVKAIAW---------CPFQSNLLATGGGGGDRCIKFWN 346 (458)
Q Consensus 289 g~i~iwd~~~~--~~~~~~~~~~~~~-----------~h~~~v~~l~~---------~p~~~~ll~s~~g~~d~~i~lwd 346 (458)
+.|+.+++... ............. ..-.....+++ .+ ...++++-. ..+.|+.++
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~--~n~~I~~~~ 371 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDR--DSHTVRVLT 371 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEET--TTTEEEEEC
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEEC--CCCEEEEEC
Confidence 78999886532 1100000000000 01123456888 44 456666654 678899998
Q ss_pred CCCCCeeEEEeCC------------------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 347 THTGACLNSVDTG------------------SQVCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 347 ~~~~~~~~~~~~~------------------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
. +|......... .....++++|....|+++ -..++.|+.+++
T Consensus 372 ~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rIr~i~~ 431 (433)
T 4hw6_A 372 P-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG-DCDNHRVRKIAP 431 (433)
T ss_dssp T-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEEEEEEE
T ss_pred C-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE-eCCCCEEEEEec
Confidence 5 55433322111 136688888444444443 334566776654
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.0041 Score=61.11 Aligned_cols=248 Identities=10% Similarity=0.006 Sum_probs=143.3
Q ss_pred CEEEEEEcC-CCCEEEEEec-CCeEEEEeCCCceeeEEecCC--CcccEEEEEe-------C--CCeEEEEeCCC-----
Q 012679 185 PVTSVNWAP-DGRHIAIGLN-NCQVQLWDSTANRQLRTLRGG--HRSRVGSLAW-------N--NHILTTGGMDG----- 246 (458)
Q Consensus 185 ~V~~v~~s~-~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~-------~--~~~l~sg~~dg----- 246 (458)
....|+|+| ++..|.++.. .+.|++.|+.++........+ .......++| + +..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 478899998 4555555544 467899998887765544431 2346888999 4 66566665544
Q ss_pred --cEEEEEccCCCeeE-----EEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCC-------CCCCCCc-------
Q 012679 247 --LIINNDVRVRDHIV-----ETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRS-------MASSNSV------- 304 (458)
Q Consensus 247 --~i~vwd~~~~~~~~-----~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~-------~~~~~~~------- 304 (458)
.|.+++........ ..+.. .....+++++|+ +.++++-..++.|..+|+. ++.....
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 25666533311111 12221 224467889995 5555566677889999987 4432000
Q ss_pred -ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC--CCCCee--EEEeC--C--------------CCeE
Q 012679 305 -TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT--HTGACL--NSVDT--G--------------SQVC 363 (458)
Q Consensus 305 -~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~--~~~~~~--~~~~~--~--------------~~v~ 363 (458)
...+... ........|+|+|++..++++-. ..+.|+.++. .++... ..+.. + ....
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 0112222 12334578999999887777655 6788998654 333221 12211 0 1234
Q ss_pred -EEEEc-------CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC------------------------CCcEEEEEE
Q 012679 364 -ALLWN-------KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH------------------------TSRVLFMAQ 411 (458)
Q Consensus 364 -~~~~s-------~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h------------------------~~~V~~l~~ 411 (458)
.++.. .++..+++ -...+.|+.++ +++ .+.++-+. -.....|++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVa--D~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFV--DRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEE--EGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred EEEEEccccccccCCCeEEEE--ECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 34443 34444444 44578899998 555 34444322 123678999
Q ss_pred cCC-CCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 412 SPD-GCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 412 spd-g~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
+++ |.++++=.....|+.+++.....+..
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 997 77767666778899999877665544
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.0031 Score=61.35 Aligned_cols=234 Identities=8% Similarity=0.065 Sum_probs=128.7
Q ss_pred ceeeccC---CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-C----eEEEEeCCCce
Q 012679 145 NLLDWGS---SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-C----QVQLWDSTANR 216 (458)
Q Consensus 145 ~~~~~~~---~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-g----~v~iwd~~~~~ 216 (458)
..+.+++ ++|+++...+.|+.+|..++.+..+. ........|+|+++|++|+++... + .+.+++. .+.
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 4456663 45666666688999999887654332 245668999999999977766542 1 2333443 332
Q ss_pred ee--EEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EEECCCc
Q 012679 217 QL--RTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SGGNDNL 290 (458)
Q Consensus 217 ~~--~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg~~dg~ 290 (458)
.. ..+. .......++++ +.++++-..++.|..++............+.......++|+|++++|. +-...+.
T Consensus 216 ~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 216 FKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp SCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 21 2222 11223445553 455666667789999998755431111112223467899999999554 4456788
Q ss_pred EEEEeCCCCCCCCcceeeeeeccc---------------cccee-EEEecC-------CCCcEEEEeCCCCCCeEEEEEC
Q 012679 291 LHIWDRSMASSNSVTQWLHRLEEH---------------TSAVK-AIAWCP-------FQSNLLATGGGGGDRCIKFWNT 347 (458)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~~~h---------------~~~v~-~l~~~p-------~~~~ll~s~~g~~d~~i~lwd~ 347 (458)
|..++........ .....+.+. -.... .++..+ ....++++-. ..+.|+.++
T Consensus 294 I~~~~~d~~~~~~--~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~--~n~~I~~i~- 368 (430)
T 3tc9_A 294 ILRSDYDWKTKRL--TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDR--ENHCIRILT- 368 (430)
T ss_dssp EEEEEEETTTTEE--CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEG--GGTEEEEEC-
T ss_pred EEEEeCCcccccc--cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEEC--CCcEEEEEC-
Confidence 9998765321100 000111100 01112 344432 1245666544 567888888
Q ss_pred CCCCeeEEEeC---------C---------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 348 HTGACLNSVDT---------G---------SQVCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 348 ~~~~~~~~~~~---------~---------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
.+|........ . .....+++++++..|+++ ...++.|+.++.
T Consensus 369 ~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rIr~i~~ 428 (430)
T 3tc9_A 369 PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG-DRENRRIRKIGY 428 (430)
T ss_dssp TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEEEEEEE
T ss_pred CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE-ECCCCeEEEEcc
Confidence 45644333322 1 147789999865555554 334566776654
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.03 E-value=0.0064 Score=62.03 Aligned_cols=232 Identities=10% Similarity=-0.020 Sum_probs=134.6
Q ss_pred CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeE-EecCCCcccEE
Q 012679 153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLR-TLRGGHRSRVG 230 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~-~~~~~~~~~v~ 230 (458)
-++.-+....|+..++............ ....+..++|++.+..|..+. ..+.|..+++....... .+.. .-....
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~~-~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~~~~P~ 87 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPD 87 (619)
T ss_dssp CCEEEECSSBEEEECCC---------CB-CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-SCSCEE
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEEc-CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-CCCCcC
Confidence 3556667788899988765321122222 245688999999777776664 45789889887653222 2322 224456
Q ss_pred EEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCCcc
Q 012679 231 SLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 231 ~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~~~ 305 (458)
.++++ ++++++-...+.|.+.++..... .......-....+|++.|.+.+|..... .+.|...++.....
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~---- 162 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---- 162 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC----
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce----
Confidence 66663 45556666778999999876543 2222234455778999997666655553 35677667654332
Q ss_pred eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCc
Q 012679 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQ 384 (458)
Q Consensus 306 ~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~ 384 (458)
.......-.....|++++++..|+.+-. ..+.|...|+.......... .......+++..+ .++.+ ....+.
T Consensus 163 --~~l~~~~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~t-d~~~~~ 235 (619)
T 3s94_A 163 --FIIINSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWT-DWSTHS 235 (619)
T ss_dssp --EEEECSSCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCCEEC---------CCCEEESSS--EEEEE-CTTTCS
T ss_pred --EEEEeCCCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEe-cCCCCE
Confidence 1112223345688999998888888765 67889999986543332222 1223356666554 55554 445678
Q ss_pred EEEEeCCCceeeEE
Q 012679 385 LTLWKYPSMVKMAE 398 (458)
Q Consensus 385 i~iwd~~~~~~~~~ 398 (458)
|...|..+++....
T Consensus 236 V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 236 ILACNKYTGEGLRE 249 (619)
T ss_dssp EEEEESSSCCCCEE
T ss_pred EEEEECCCCcccEE
Confidence 88888876654433
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.03 E-value=0.0046 Score=58.42 Aligned_cols=232 Identities=12% Similarity=0.077 Sum_probs=124.0
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee--eEEec--CCCcccEEEEEeCCC-----eEEEEeCC------Cc
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ--LRTLR--GGHRSRVGSLAWNNH-----ILTTGGMD------GL 247 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~--~~~~~--~~~~~~v~~l~~~~~-----~l~sg~~d------g~ 247 (458)
-.....++|.|+|++ +++..+|.|.+++ .++. +..+. .........|++++. .|..+... +.
T Consensus 30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345789999999984 5556779999998 3332 22221 112356788999653 55555432 57
Q ss_pred EEEEEccCCC-----eeEEEEc---ccccceEeEEEcCCCCEEEEEEC-------------CCcEEEEeCCCCCCCC-c-
Q 012679 248 IINNDVRVRD-----HIVETYR---GHNQEVCGLKWSASGQQLASGGN-------------DNLLHIWDRSMASSNS-V- 304 (458)
Q Consensus 248 i~vwd~~~~~-----~~~~~~~---~h~~~v~~l~~spd~~~l~sg~~-------------dg~i~iwd~~~~~~~~-~- 304 (458)
|..++..... .++..+. +.......++|.|||.+.++.+. .|.|.-++....-... .
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876431 1222232 11123468999999987666442 1456666654310000 0
Q ss_pred -----ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC-------eEEEEECCC----------------CCeeEEE
Q 012679 305 -----TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR-------CIKFWNTHT----------------GACLNSV 356 (458)
Q Consensus 305 -----~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~-------~i~lwd~~~----------------~~~~~~~ 356 (458)
.....-..++ .....++|+|+...|+++-.| .++ .|.+..... ..++..+
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 0000011123 235678999965666665432 222 233332111 0122233
Q ss_pred eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee------eEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK------MAELSGHTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 357 ~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~------~~~~~~h~~~V~~l~~spdg~~l~s~s 422 (458)
........++| .++..+++ ....+.|...++..... ...+..-..++..+++.|||.+.++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~--~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVA--GLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEE--ETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEEEEE--ECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 23344567777 35555444 34566777777653321 122222236789999999998777654
No 295
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.02 E-value=0.028 Score=61.51 Aligned_cols=275 Identities=10% Similarity=0.054 Sum_probs=156.1
Q ss_pred cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC------CCEEEEEec-CCeEEEEeCCCce
Q 012679 144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD------GRHIAIGLN-NCQVQLWDSTANR 216 (458)
Q Consensus 144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~------g~~la~g~~-dg~v~iwd~~~~~ 216 (458)
+...+-+... ++++.++.+.++.+..+++.......- ...|.|+++.|. ++++|+|.. |++|+|+++.+.+
T Consensus 516 I~~As~n~~~-vvva~g~~l~~fel~~~~L~~~~~~~l-~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 516 ISVASCNSSQ-VVVAVGRALYYLQIHPQELRQISHTEM-EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp CCEEEECSSE-EEEEETTEEEEEEEETTEEEEEEEEEC-SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEeCCCE-EEEEECCEEEEEEeeCCceeeecccCC-CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 4444444333 444457888888887766554444332 567999999863 479999997 9999999998876
Q ss_pred eeEEecCCCcccEEEEEe---C-CCeEEEEeCCCcEEEEEccC--CCee--EEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679 217 QLRTLRGGHRSRVGSLAW---N-NHILTTGGMDGLIINNDVRV--RDHI--VETYRGHNQEVCGLKWSASGQQLASGGND 288 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~l~~---~-~~~l~sg~~dg~i~vwd~~~--~~~~--~~~~~~h~~~v~~l~~spd~~~l~sg~~d 288 (458)
.+....-+......++.. . ..+|..|-.||.+.-+.+.. +... .....| ..++.=..+...+..-+.+..+
T Consensus 594 ~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~ 672 (1158)
T 3ei3_A 594 LLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSD 672 (1158)
T ss_dssp EEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESS
T ss_pred eEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECC
Confidence 665433212233444433 3 35788999999987666542 2211 112223 3445444444444443334445
Q ss_pred CcEEEEeCCCCCCCCcceeeeeeccccccee-EEEecCCC--CcEEEEeCCCCCCeEEEEECCCC--CeeEEEeCCCCeE
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVK-AIAWCPFQ--SNLLATGGGGGDRCIKFWNTHTG--ACLNSVDTGSQVC 363 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~--~~ll~s~~g~~d~~i~lwd~~~~--~~~~~~~~~~~v~ 363 (458)
....++--+. .. . ...+. ...+. ...|+..+ ..++++ .++.+++..+.+. -.++++..+..+.
T Consensus 673 rp~liy~~~~-~l----~-~s~l~--~~~v~~~~~F~se~~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tpr 740 (1158)
T 3ei3_A 673 RPTVIYSSNH-KL----V-FSNVN--LKEVNYMCPLNSDGYPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPR 740 (1158)
T ss_dssp SCEEEEESSS-SE----E-EEEBS--SSCCCEEEEECCSSSTTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEE
T ss_pred CCEEEEEcCC-ce----E-EeccC--hHHhceEeccCcccCCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCce
Confidence 5555554321 11 0 11111 11222 23343321 233333 3556888877543 2456677788889
Q ss_pred EEEEcCCCCeEEEEecCC-----------------------------------------------CCcEEEEeCCCceee
Q 012679 364 ALLWNKNERELLSSHGFT-----------------------------------------------QNQLTLWKYPSMVKM 396 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~-----------------------------------------------d~~i~iwd~~~~~~~ 396 (458)
.++++|..+.+++.+... ...|++.|..+++.+
T Consensus 741 ri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i 820 (1158)
T 3ei3_A 741 KICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVL 820 (1158)
T ss_dssp EEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEE
Confidence 999999887665543110 124777887777776
Q ss_pred EEEeCC-CCcEEEEEE---cC-CCCEEEEEe----------CCCcEEEEecC
Q 012679 397 AELSGH-TSRVLFMAQ---SP-DGCTVASAA----------ADETLRFWNVF 433 (458)
Q Consensus 397 ~~~~~h-~~~V~~l~~---sp-dg~~l~s~s----------~Dg~i~iW~~~ 433 (458)
..+.-. ...+.+++. .. ...+|+.|+ ..|.|.++++.
T Consensus 821 ~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 821 HAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp EEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred EEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 655422 234555553 22 246888776 24789999986
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.01 E-value=0.0021 Score=59.86 Aligned_cols=184 Identities=9% Similarity=0.124 Sum_probs=117.7
Q ss_pred CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC----CCE--EEE-EE-C--CCcEEEEeCCCCCCCCcce
Q 012679 237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS----GQQ--LAS-GG-N--DNLLHIWDRSMASSNSVTQ 306 (458)
Q Consensus 237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd----~~~--l~s-g~-~--dg~i~iwd~~~~~~~~~~~ 306 (458)
.+++.....+-+.+||+ .++. +..+.. +.++.+..-|+ |+. ++. .. . +++|.+|++......
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~-l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---- 112 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKM-LHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---- 112 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCE-EEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----
T ss_pred cEEEEEcCCCCEEEEcC-CCcE-EEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----
Confidence 55666677889999999 3443 455543 55666666652 222 333 33 3 589999976422211
Q ss_pred eeeeec-------ccccceeEEEe--cCCCC-cEEEEeCCCCCCeEEEEEC-------CCCCeeEEEeCCCCeEEEEEcC
Q 012679 307 WLHRLE-------EHTSAVKAIAW--CPFQS-NLLATGGGGGDRCIKFWNT-------HTGACLNSVDTGSQVCALLWNK 369 (458)
Q Consensus 307 ~~~~~~-------~h~~~v~~l~~--~p~~~-~ll~s~~g~~d~~i~lwd~-------~~~~~~~~~~~~~~v~~~~~s~ 369 (458)
+..+. .....+..+++ +|... ..+++.. .+|.+..|++ .+.+.++++..++++-.+...+
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~--k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd 189 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG--KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD 189 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC--CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC
Confidence 22221 11155667777 77544 2344433 6799999988 2346788899999999999999
Q ss_pred CCCeEEEEecCCCCcEEEEeCC-----CceeeEEEe-CCC-CcEEEEEE--cCCCC-EEEEEe-CCCcEEEEecC
Q 012679 370 NERELLSSHGFTQNQLTLWKYP-----SMVKMAELS-GHT-SRVLFMAQ--SPDGC-TVASAA-ADETLRFWNVF 433 (458)
Q Consensus 370 ~~~~l~~~~g~~d~~i~iwd~~-----~~~~~~~~~-~h~-~~V~~l~~--spdg~-~l~s~s-~Dg~i~iW~~~ 433 (458)
....|++ +.++..|..++.. +.+.+..+. ++- ..+..|++ .++|+ +|++++ .+.++.+||..
T Consensus 190 ~~g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 190 EYGRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998 4466556666644 345565542 222 46888888 55666 666555 67899999986
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.00 E-value=0.0051 Score=57.43 Aligned_cols=232 Identities=11% Similarity=0.120 Sum_probs=125.8
Q ss_pred ccccceeeccCCCeEEEEcCCEEEEEECCCCC-eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGT-TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~-~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
+..++.+.++++.+++++..+.|+.- .+.|+ ...+.....+.+.+..+.+.+++..++++ .+|.|.. ....++.-.
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~ 155 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQ 155 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEE
T ss_pred CccEEEEEecCCeEEEEECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCE
Confidence 34566677777778888888866653 33343 32222211233567888887777766655 4554432 222344333
Q ss_pred EecCCCcccEEEEEeC--CCeEEEEeCCCcEEEE-EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679 220 TLRGGHRSRVGSLAWN--NHILTTGGMDGLIINN-DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vw-d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~ 296 (458)
.+.......+..+.+. +.+++.+ .+|.+..- |-. +..-...-......+..+.+.+++..++ ++.+|.+++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~ 232 (327)
T 2xbg_A 156 ALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDP 232 (327)
T ss_dssp EEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEET
T ss_pred EeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecC
Confidence 3333356678888884 4455444 55555443 321 1111111234456788899999887654 556788877642
Q ss_pred CCCCCCCcceeeeee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe----CCCCeEEEEEcCCC
Q 012679 297 SMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNKNE 371 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~ 371 (458)
..+.. ...+..- ..+...+.++++.++ ..+++++ .++.| ++....|+.-..+. ....+..+.|.+++
T Consensus 233 D~G~t---W~~~~~~~~~~~~~~~~v~~~~~-~~~~~~g---~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~ 304 (327)
T 2xbg_A 233 DNSEN---WGELLSPLRRNSVGFLDLAYRTP-NEVWLAG---GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD 304 (327)
T ss_dssp TEEEE---ECCCBCTTSSCCSCEEEEEESSS-SCEEEEE---STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred CCCCe---eEeccCCcccCCcceEEEEecCC-CEEEEEe---CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence 21211 0000000 012235788899884 5566665 46666 44445554443333 23567888887655
Q ss_pred CeEEEEecCCCCcEEEEe
Q 012679 372 RELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd 389 (458)
..+++ | .+|.|.-++
T Consensus 305 ~~~~~--G-~~G~i~~~~ 319 (327)
T 2xbg_A 305 QGFIL--G-QKGILLRYV 319 (327)
T ss_dssp EEEEE--C-STTEEEEEC
T ss_pred ceEEE--c-CCceEEEEc
Confidence 54443 4 577666554
No 298
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.97 E-value=0.0085 Score=53.50 Aligned_cols=198 Identities=13% Similarity=0.157 Sum_probs=124.9
Q ss_pred CcccEEEEEeC--CC-eEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679 225 HRSRVGSLAWN--NH-ILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 225 ~~~~v~~l~~~--~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
-...+..++|+ ++ ++++...++.|...|.. +. +...+. +-....-+|++.+++.++++.-.++.+.++++....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 45679999996 34 55567788999999987 44 344442 223567889999988876766677889999876654
Q ss_pred CCCcceeeeee----cccccceeEEEecCCCCcEEEEeCCCCCC-eEEEEEC-CCCCeeEEEe--------CCCCeEEEE
Q 012679 301 SNSVTQWLHRL----EEHTSAVKAIAWCPFQSNLLATGGGGGDR-CIKFWNT-HTGACLNSVD--------TGSQVCALL 366 (458)
Q Consensus 301 ~~~~~~~~~~~----~~h~~~v~~l~~~p~~~~ll~s~~g~~d~-~i~lwd~-~~~~~~~~~~--------~~~~v~~~~ 366 (458)
...... ...+ .........|+|+|.+..++++.. .+. .|..|+- .....+..+. .-..+.+++
T Consensus 103 ~i~~~~-~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E--~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 103 EVKILK-KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE--KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp CEEEEE-EEECCCSSCCCSSCCEEEEEETTTTEEEEEEE--SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred eeeeee-eeccccccccccCCcceEEEeCCCCEEEEEEC--cCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 311001 1111 123455789999998877777653 333 5666651 1111222221 123578999
Q ss_pred EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC---------CcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 367 WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT---------SRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 367 ~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~---------~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
++|....+++.+. ....|.++|... +.+..+.-.. ...-.|+|.++|+..++ ++-+ .||.+
T Consensus 180 ~dp~tg~lliLS~-~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n--~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSH-ESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN--RFYRF 249 (255)
T ss_dssp EETTTTEEEEEET-TTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT--EEEEE
T ss_pred EcCCCCeEEEEEC-CCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc--eEEEE
Confidence 9998887777643 678889999664 4444432111 25689999999985554 6665 44544
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.94 E-value=0.0072 Score=61.66 Aligned_cols=227 Identities=12% Similarity=0.059 Sum_probs=131.8
Q ss_pred cCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEE-EEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679 203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILT-TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279 (458)
Q Consensus 203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~ 279 (458)
....|+..|+........+....-.....++|+ +..|+ +-...+.|..+++.........+........++++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 345788888876532122221134456778774 44444 444567888888875432123333333568899999865
Q ss_pred CEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-
Q 012679 280 QQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD- 357 (458)
Q Consensus 280 ~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~- 357 (458)
+.| ++-...+.|.+.++..... ...+...-.....|++.|.++.++.+--| ..+.|...++........+.
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~------~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLR------KVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSC------EEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECS
T ss_pred CEEEEEeCCCCEEEEEECCCCCE------EEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeC
Confidence 555 4445678999999876433 11222334457799999987888887632 34677777776433333332
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
.......+++++++..|+.+-. ..+.|..+++..........+......+|++..+ ...++-...+.|...|..++..
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~-~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADA-KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEET-TTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCCCCcEEEEEccCCEEEEEeC-CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 3456789999998888887643 5678999998765443333322223356777655 4444445677888888876654
Q ss_pred c
Q 012679 438 V 438 (458)
Q Consensus 438 ~ 438 (458)
.
T Consensus 247 ~ 247 (619)
T 3s94_A 247 L 247 (619)
T ss_dssp C
T ss_pred c
Confidence 3
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.89 E-value=7.6e-05 Score=77.51 Aligned_cols=224 Identities=11% Similarity=-0.036 Sum_probs=128.6
Q ss_pred CCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEE-eCCCcEEEEEccCC---CeeEEEEcccccceEeEEEcC
Q 012679 204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTG-GMDGLIINNDVRVR---DHIVETYRGHNQEVCGLKWSA 277 (458)
Q Consensus 204 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg-~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~l~~sp 277 (458)
.+.|+..++.+.+....+. ....+..++|+ ...|+.. ...+.|+.+++... ......+........+|++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 4578888887766544433 23345677774 3444444 45678999988751 111112211223456788886
Q ss_pred CC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE
Q 012679 278 SG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356 (458)
Q Consensus 278 d~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~ 356 (458)
.+ +++++-...+.|.++++..... ...+.........|++.|.+..|+++..+ ..+.|..+++........+
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~------~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKR------KTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCE------EEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEES
T ss_pred eCCcEEEEeccCCeEEEEecCCCce------EEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEE
Confidence 44 4445545678899999765432 11122223456789999987777776431 2367888777533222221
Q ss_pred e-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 357 D-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 357 ~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
. .-.....|+|++++..|+.+. ...+.|.++++........+. ........|++..+ .++++....+.|..++..
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEE-TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred eCCCCCccEEEEeccCCEEEEEe-cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 1 234467899999888777764 357789999986533322222 11223445666544 455555567889999876
Q ss_pred CCCcc
Q 012679 434 GAPQV 438 (458)
Q Consensus 434 ~~~~~ 438 (458)
++...
T Consensus 614 ~G~~~ 618 (699)
T 1n7d_A 614 TGSDV 618 (699)
T ss_dssp TEEEE
T ss_pred CCCce
Confidence 55443
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.88 E-value=0.0074 Score=56.16 Aligned_cols=198 Identities=11% Similarity=0.168 Sum_probs=124.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe------CCC---eEEEEeC---CCcEEEEEccCCCeeEE
Q 012679 194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW------NNH---ILTTGGM---DGLIINNDVRVRDHIVE 261 (458)
Q Consensus 194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~------~~~---~l~sg~~---dg~i~vwd~~~~~~~~~ 261 (458)
...+++.....+-+.+||+ +++.++.+.. .+++.+.. .+. ++++..+ +..|.+|++......+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 3455666667789999999 8888888864 33444333 332 3344444 47899997742222233
Q ss_pred EEcc------cc-cceEeEEE--cCC-CC-EEEEEECCCcEEEEeCCCCCC-CCcceeeeeecccccceeEEEecCCCCc
Q 012679 262 TYRG------HN-QEVCGLKW--SAS-GQ-QLASGGNDNLLHIWDRSMASS-NSVTQWLHRLEEHTSAVKAIAWCPFQSN 329 (458)
Q Consensus 262 ~~~~------h~-~~v~~l~~--spd-~~-~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 329 (458)
.+.. .. ..+.++++ +|. ++ ++++...+|.+..|++..... ....+.+.++.- ...+..++..+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 3321 11 56777888 774 44 677888899999999854211 112233555543 457788888887677
Q ss_pred EEEEeCCCCCCeEEEEECC-----CCCeeEEEeCC---CCeEEEEE--cCCCC-eEEEEecCCCCcEEEEeCC-CceeeE
Q 012679 330 LLATGGGGGDRCIKFWNTH-----TGACLNSVDTG---SQVCALLW--NKNER-ELLSSHGFTQNQLTLWKYP-SMVKMA 397 (458)
Q Consensus 330 ll~s~~g~~d~~i~lwd~~-----~~~~~~~~~~~---~~v~~~~~--s~~~~-~l~~~~g~~d~~i~iwd~~-~~~~~~ 397 (458)
|++.- ++.-|..++.. +++.+..+..+ ..+..|++ .++++ +|++++ -.++.+.+||.. +.+.+.
T Consensus 194 Lyv~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs-QG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 194 LYIAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS-QGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp EEEEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE-GGGTEEEEEESSTTCCEEE
T ss_pred EEEec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc-CCCCEEEEEECCCCCcEEE
Confidence 77654 66667777755 34455555433 46788877 45556 666654 246899999996 677777
Q ss_pred EEe
Q 012679 398 ELS 400 (458)
Q Consensus 398 ~~~ 400 (458)
.+.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 773
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.79 E-value=0.025 Score=53.27 Aligned_cols=234 Identities=10% Similarity=0.055 Sum_probs=128.0
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-eeEEec--CCCcccEEEEEeCC-----CeEEEEeC----C----C
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-QLRTLR--GGHRSRVGSLAWNN-----HILTTGGM----D----G 246 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-~~~~~~--~~~~~~v~~l~~~~-----~~l~sg~~----d----g 246 (458)
-.....|+|.|+|+ |+++..+|.|.++| ..++ .+..+. .........|++++ ..|..+.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 44578999999997 55566779999997 3444 222221 11234678899964 35555443 2 5
Q ss_pred cEEEEEccCCC------e-eEEEEcc-cccceEeEEEcCCCCEEEEEEC-------------CCcEEEEeCCCCCCC-Cc
Q 012679 247 LIINNDVRVRD------H-IVETYRG-HNQEVCGLKWSASGQQLASGGN-------------DNLLHIWDRSMASSN-SV 304 (458)
Q Consensus 247 ~i~vwd~~~~~------~-~~~~~~~-h~~~v~~l~~spd~~~l~sg~~-------------dg~i~iwd~~~~~~~-~~ 304 (458)
.|..++..... . ++..+.. .......|.|.|||.++++.+. .|.|.-++....-.. ..
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 67777765431 1 1121221 1123467999999987776443 245555554422000 00
Q ss_pred --ceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-CeEEEEECCC--------C--------CeeEEE-eCCCCeEE
Q 012679 305 --TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-RCIKFWNTHT--------G--------ACLNSV-DTGSQVCA 364 (458)
Q Consensus 305 --~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~~i~lwd~~~--------~--------~~~~~~-~~~~~v~~ 364 (458)
...+. ..++. ....++|+|+...++++-.|... ..|.+...-. + .++..+ ........
T Consensus 186 f~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 00011 11232 34689999966667776543211 1233322100 0 122333 23445778
Q ss_pred EEEc-------CCCCeEEEEecCCCCcEEEEeCCCc-eee--EEEe-CCCCcEEEEEEcCCCCEEEEEe
Q 012679 365 LLWN-------KNERELLSSHGFTQNQLTLWKYPSM-VKM--AELS-GHTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 365 ~~~s-------~~~~~l~~~~g~~d~~i~iwd~~~~-~~~--~~~~-~h~~~V~~l~~spdg~~l~s~s 422 (458)
+.|. .++..+++ ....+.|...++... +.. ..+. +-..++..+++.|||.+.++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIA--CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEE--ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEE--EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 8884 45655555 446678888888753 221 2332 2346789999999998777664
No 303
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.78 E-value=0.0037 Score=67.98 Aligned_cols=277 Identities=10% Similarity=0.098 Sum_probs=172.3
Q ss_pred cceeeccCCCeEEEEc----CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 144 LNLLDWGSSNVLAIAL----GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 144 ~~~~~~~~~~~la~~~----d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
+..+.+.++..+++-. +..|.|.|+.++.......+. --+.-.+|..+.||.-. ..+++|+|+++...+.
T Consensus 27 f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klk 100 (1630)
T 1xi4_A 27 FSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMK 100 (1630)
T ss_pred ccceeeecCceEEEEecCCCCceEEEEECCCCCCccccccc-----chhhccCCCcceEEEec-CCeEEEeehHHhhhhc
Confidence 3344444555555443 347899998876642112122 22344678888777765 5689999999998888
Q ss_pred EecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEccc----ccceEeEEEcCCCCEEEEEE-------C
Q 012679 220 TLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGH----NQEVCGLKWSASGQQLASGG-------N 287 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~~l~~spd~~~l~sg~-------~ 287 (458)
.+. ....|.--.| +.+.|+..+. ..|+.|++.....+++.+.-| ...|..-..+++.++++..| -
T Consensus 101 s~~--~~e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v 177 (1630)
T 1xi4_A 101 AHT--MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV 177 (1630)
T ss_pred ccc--cCCCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcc
Confidence 877 4557888888 6666666554 579999997654444444444 45677778889999887554 3
Q ss_pred CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec--CCCCcEEEEeCC-CCCCeEEEEECCCC---Ce-e--EEE--
Q 012679 288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC--PFQSNLLATGGG-GGDRCIKFWNTHTG---AC-L--NSV-- 356 (458)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~ll~s~~g-~~d~~i~lwd~~~~---~~-~--~~~-- 356 (458)
.|.+.+|..+.... +.+.+|.+....+... +....+++.+.- ...+.+++-++... .. . +..
T Consensus 178 ~G~mQLyS~er~~s-------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~ 250 (1630)
T 1xi4_A 178 VGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV 250 (1630)
T ss_pred cceeeeeecccccc-------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccc
Confidence 47888888776543 5567777665554443 222345443321 12368888887543 11 1 011
Q ss_pred --eC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 357 --DT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 357 --~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
.. ..-..++..++....++..+ .-|.|.+||+.++..+..-+-....|...+......-++.....|.|.--.
T Consensus 251 ~~~~~~~~Dfpv~~~vs~k~g~iy~it--k~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~ 328 (1630)
T 1xi4_A 251 FFPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (1630)
T ss_pred cCCcccccCcceEEEeccccCEEEEEe--cCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEE
Confidence 11 12245677777777777755 789999999999988776555555555555444333344455777776666
Q ss_pred cCCCCcc
Q 012679 432 VFGAPQV 438 (458)
Q Consensus 432 ~~~~~~~ 438 (458)
+.....+
T Consensus 329 v~~~~iv 335 (1630)
T 1xi4_A 329 VEEENII 335 (1630)
T ss_pred Eccchhh
Confidence 6554433
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.77 E-value=0.0027 Score=58.34 Aligned_cols=220 Identities=17% Similarity=0.202 Sum_probs=115.2
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEeCCCce---e--eEEecCCCcccEE
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-----CQVQLWDSTANR---Q--LRTLRGGHRSRVG 230 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-----g~v~iwd~~~~~---~--~~~~~~~~~~~v~ 230 (458)
..+.+||..+.++..+..+.........+. .++..++.|+.+ ..+.+||..+.+ - +..+.. ......
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~-~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV-RRGLAG 107 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS-CCBSCE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC-Ccccee
Confidence 478999999888765554443222222332 356777777755 368999988765 2 222222 222334
Q ss_pred EEEeCCCeEEEEeCCC-----cEEEEEccCCCee-EEEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 012679 231 SLAWNNHILTTGGMDG-----LIINNDVRVRDHI-VETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMA 299 (458)
Q Consensus 231 ~l~~~~~~l~sg~~dg-----~i~vwd~~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~ 299 (458)
++..++.+++.|+.++ .+.+||+.+..-. +..+.........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 108 ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 4455788888887543 5888998766532 1112111111122222 67777777754 45888998765
Q ss_pred CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeE
Q 012679 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNEREL 374 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l 374 (458)
.-.. +..+........++.+ +..+++.|+... -..+.+||+.+.+....-..... -.+++.. +++ |
T Consensus 186 ~W~~----~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i 256 (301)
T 2vpj_A 186 HWTN----VTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGR-L 256 (301)
T ss_dssp EEEE----ECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-E
T ss_pred cEEe----CCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCE-E
Confidence 4311 1111111111112222 456777765211 24689999988765433222211 1122222 444 4
Q ss_pred EEEecCCC----CcEEEEeCCCce
Q 012679 375 LSSHGFTQ----NQLTLWKYPSMV 394 (458)
Q Consensus 375 ~~~~g~~d----~~i~iwd~~~~~ 394 (458)
++..|... +.+.+||..+.+
T Consensus 257 ~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 257 YAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEcCcCCCcccccEEEEcCCCCe
Confidence 44434332 357788876543
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.74 E-value=0.0041 Score=57.08 Aligned_cols=228 Identities=14% Similarity=0.174 Sum_probs=115.3
Q ss_pred CCCEEEEEe-cC-----CeEEEEeCCCceeeE--EecCCCcccEEEEEeCCCeEEEEeCC-----CcEEEEEccCCC---
Q 012679 194 DGRHIAIGL-NN-----CQVQLWDSTANRQLR--TLRGGHRSRVGSLAWNNHILTTGGMD-----GLIINNDVRVRD--- 257 (458)
Q Consensus 194 ~g~~la~g~-~d-----g~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~--- 257 (458)
++.+++.|+ .+ ..+.+||+.+.+-.. .+.. .......+..++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITR-KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCCh-hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 445566665 33 368899988765332 1221 222334455678888888865 468899988765
Q ss_pred ee-EEEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679 258 HI-VETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 258 ~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll 331 (458)
.. +..+.........+.+ ++++++.|+.+ +.+.+||..+..-.. +..+........++.+ +..++
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iy 163 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM----LGDMQTAREGAGLVVA---SGVIY 163 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE----EEECSSCCBSCEEEEE---TTEEE
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE----CCCCCCCcccceEEEE---CCEEE
Confidence 21 1111111111222222 67777777654 358888987654311 1111111111112222 35677
Q ss_pred EEeCCCC---CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCC----CCcEEEEeCCCceeeE--EEe
Q 012679 332 ATGGGGG---DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFT----QNQLTLWKYPSMVKMA--ELS 400 (458)
Q Consensus 332 ~s~~g~~---d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~----d~~i~iwd~~~~~~~~--~~~ 400 (458)
+.|+... -..+.+||..+.+-...-..... -.+++.. + ..|++..|.. .+.+.+||..+.+-.. .+.
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T-TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-C-CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 7664111 24688999988765433222211 1122222 3 3455544433 3568999998764332 221
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCC
Q 012679 401 GHTSRVLFMAQSPDGCTVASAAADE-----TLRFWNVFGA 435 (458)
Q Consensus 401 ~h~~~V~~l~~spdg~~l~s~s~Dg-----~i~iW~~~~~ 435 (458)
........+.+ ++++++.|+.++ .|.+||+...
T Consensus 242 ~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 242 TPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11111122223 677777777653 4667777543
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.72 E-value=0.028 Score=51.79 Aligned_cols=157 Identities=9% Similarity=0.104 Sum_probs=107.7
Q ss_pred ccccceeeccC--CCeEEEE-cCCEEEEEECCCCCeeeEEEecC----CC--CCEEEEEE---cCCCCEEEEEec-----
Q 012679 141 DYYLNLLDWGS--SNVLAIA-LGSTVYLWDASDGTTSELVTVDD----EN--GPVTSVNW---APDGRHIAIGLN----- 203 (458)
Q Consensus 141 d~~~~~~~~~~--~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~----h~--~~V~~v~~---s~~g~~la~g~~----- 203 (458)
..|..+.+|+. +.++.+. ..++|..||...+....+ .+.+ .. ..+..|.| .|+++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 34677889986 5566666 489999999987765444 4432 11 13689999 688877776442
Q ss_pred --------CCeEEEEeCC---CceeeEEecCC------------CcccEEEEEeC--CCeEEEEeCC-CcEEEEEccCCC
Q 012679 204 --------NCQVQLWDST---ANRQLRTLRGG------------HRSRVGSLAWN--NHILTTGGMD-GLIINNDVRVRD 257 (458)
Q Consensus 204 --------dg~v~iwd~~---~~~~~~~~~~~------------~~~~v~~l~~~--~~~l~sg~~d-g~i~vwd~~~~~ 257 (458)
+..|..||+. +++.+...... -......++.+ |+..++++.. +.|...+.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 5779999999 78776655420 11246777774 7888888888 888777776442
Q ss_pred eeEEEEc----ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 258 HIVETYR----GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 258 ~~~~~~~----~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
.....+. ......++|+++|+|+.|++...+|.|..+|+..
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2111111 1122367999999999998887799999999884
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.70 E-value=0.0035 Score=57.61 Aligned_cols=220 Identities=16% Similarity=0.209 Sum_probs=112.9
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-----eEEEEeCCCceeeEE--ecCCCcccEEEEE
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTANRQLRT--LRGGHRSRVGSLA 233 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~~--~~~~~~~~v~~l~ 233 (458)
..+.+||..+.+...+..+......-..+.+ ++..++.|+.++ .+.+||..+.+-... +.. .........
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD-RRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc-cccceEEEE
Confidence 4688999998887655444432222222322 677777777543 588999887653322 221 222334455
Q ss_pred eCCCeEEEEeCCC-----cEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECC-------CcEEEEeCCCCC
Q 012679 234 WNNHILTTGGMDG-----LIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGND-------NLLHIWDRSMAS 300 (458)
Q Consensus 234 ~~~~~l~sg~~dg-----~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~d-------g~i~iwd~~~~~ 300 (458)
+++.+++.|+.++ .+.+||+.+..-.. ..+.........+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 6888888888664 47788887654211 111111111122222 66777777642 358889987654
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEE
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELL 375 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~ 375 (458)
-.. +..+........++.+ +..+++.|+... ...+.+||..+.+-...-..... -..++.. ++ .|+
T Consensus 185 W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~i~ 255 (302)
T 2xn4_A 185 WTY----IAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NG-LLY 255 (302)
T ss_dssp EEE----ECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEE
T ss_pred EEE----CCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CC-EEE
Confidence 311 1111111111112222 356777765111 24689999988764433222111 1112221 33 444
Q ss_pred EEecCCC----CcEEEEeCCCce
Q 012679 376 SSHGFTQ----NQLTLWKYPSMV 394 (458)
Q Consensus 376 ~~~g~~d----~~i~iwd~~~~~ 394 (458)
+..|... ..+.+||..+.+
T Consensus 256 v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 256 VVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EECCBCSSSBCCCEEEEETTTTE
T ss_pred EECCcCCCcccccEEEEcCCCCe
Confidence 4434332 357888877654
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.66 E-value=0.0049 Score=56.74 Aligned_cols=220 Identities=13% Similarity=0.174 Sum_probs=116.4
Q ss_pred CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC----CeEEEEeCCCceeeEE--ecCCCcccEEEEE
Q 012679 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN----CQVQLWDSTANRQLRT--LRGGHRSRVGSLA 233 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~ 233 (458)
...+.+||..++++..+..+......-..+.+ ++..++.|+.+ ..+.+||..+++-... +.. .......+.
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~ 99 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT-PRDSLAACA 99 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS-CCBSCEEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc-cccceeEEE
Confidence 36899999999887666544433323333333 66777777754 5789999988754332 222 222234445
Q ss_pred eCCCeEEEEeCC------CcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEEC---------CCcEEEEeCC
Q 012679 234 WNNHILTTGGMD------GLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGN---------DNLLHIWDRS 297 (458)
Q Consensus 234 ~~~~~l~sg~~d------g~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~---------dg~i~iwd~~ 297 (458)
.++.+++.|+.+ ..+.+||+.+..-.. ..+.........+. -++++++.|+. -..+.+||+.
T Consensus 100 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 100 AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 578888888865 468899988764311 11111111111222 26677777763 3458899987
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---CCeEEEEECCCCCeeEEEeCCC---CeEEEEEcCCC
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---DRCIKFWNTHTGACLNSVDTGS---QVCALLWNKNE 371 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---d~~i~lwd~~~~~~~~~~~~~~---~v~~~~~s~~~ 371 (458)
+..-.. +..+......- +++.. +..+++.|+... -..+.+||..+.+-...-.... ....+.+ ++
T Consensus 178 ~~~W~~----~~~~p~~r~~~-~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 248 (306)
T 3ii7_A 178 TETWTE----LCPMIEARKNH-GLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS 248 (306)
T ss_dssp TTEEEE----ECCCSSCCBSC-EEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT
T ss_pred CCeEEE----CCCccchhhcc-eEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC
Confidence 764311 11111111111 22222 356777764111 1468899998875433222211 1222222 33
Q ss_pred CeEEEEecCC----CCcEEEEeCCCce
Q 012679 372 RELLSSHGFT----QNQLTLWKYPSMV 394 (458)
Q Consensus 372 ~~l~~~~g~~----d~~i~iwd~~~~~ 394 (458)
.|++..|.. .+.+.+||..+.+
T Consensus 249 -~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 249 -IVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp -EEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred -EEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 444444532 2468888887643
No 309
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=0.083 Score=51.81 Aligned_cols=245 Identities=9% Similarity=0.085 Sum_probs=132.5
Q ss_pred ceeeccC---CCeEEEEcC-CEEEEEECCCCCeeeEEEecC-CCCCEEEEEE-------cCCCCEEEEEecCC-------
Q 012679 145 NLLDWGS---SNVLAIALG-STVYLWDASDGTTSELVTVDD-ENGPVTSVNW-------APDGRHIAIGLNNC------- 205 (458)
Q Consensus 145 ~~~~~~~---~~~la~~~d-~~v~iwd~~~~~~~~~~~~~~-h~~~V~~v~~-------s~~g~~la~g~~dg------- 205 (458)
..|.+++ ++|+++..+ +.|++.|.+++.+..+..... .......|+| +++|++|+++...+
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 3456664 445555543 679999999888755544321 2235899999 99999777776554
Q ss_pred eEEEEeCCC-ceee-----EEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEcc-------CCCe------e----
Q 012679 206 QVQLWDSTA-NRQL-----RTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVR-------VRDH------I---- 259 (458)
Q Consensus 206 ~v~iwd~~~-~~~~-----~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~-------~~~~------~---- 259 (458)
.|.+++... +... ..+.. . .....++.+ +.++++-..++.|..+|+. ++.. .
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~-~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAA-Y-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEE-E-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred eEEEEecCCCCceeecccceeecc-C-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266665433 1221 11211 1 122344553 4566667778889999987 3432 0
Q ss_pred EEE-E-cccccceEeEEEcCCCCEEEEE-ECCCcEEEEeCCCCCC--CCcceeeeee--ccc---------cccee-EEE
Q 012679 260 VET-Y-RGHNQEVCGLKWSASGQQLASG-GNDNLLHIWDRSMASS--NSVTQWLHRL--EEH---------TSAVK-AIA 322 (458)
Q Consensus 260 ~~~-~-~~h~~~v~~l~~spd~~~l~sg-~~dg~i~iwd~~~~~~--~~~~~~~~~~--~~h---------~~~v~-~l~ 322 (458)
... + .+.......|+|+|+|++|..+ +..+.|+.++...... .......-.. .+. -.... .++
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 111 1 1223445789999999965444 5567888866543211 0000000000 000 01123 334
Q ss_pred ecC------CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CC------------------------CCeEEEEEcCC-
Q 012679 323 WCP------FQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TG------------------------SQVCALLWNKN- 370 (458)
Q Consensus 323 ~~p------~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~------------------------~~v~~~~~s~~- 370 (458)
... ....++++-. ..+.|+.++ .+|.. .++. .+ .....++++++
T Consensus 380 vd~~~~~~~~~g~lyVaD~--~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 380 VKNPDYTGEEEYDFYFVDR--LNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EECTTCCSSCCEEEEEEEG--GGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EccccccccCCCeEEEEEC--CCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 431 2345666654 678899998 45643 3332 10 12567888886
Q ss_pred CCeEEEEecCCCCcEEEEeCCCceeeE
Q 012679 371 ERELLSSHGFTQNQLTLWKYPSMVKMA 397 (458)
Q Consensus 371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~ 397 (458)
+..+++ -..++.|+.+++.....++
T Consensus 456 g~lyVa--D~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 456 EMFYVH--DQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TEEEEE--ETTTTEEEEEEECCCC---
T ss_pred CEEEEE--eCCCCEEEEEECCCCcccc
Confidence 444444 3456778887776554444
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.50 E-value=0.058 Score=49.43 Aligned_cols=156 Identities=12% Similarity=0.204 Sum_probs=104.7
Q ss_pred ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCC----CCCEEEEEEcCCCCEEEEEec-------CCeEEEEe
Q 012679 143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDE----NGPVTSVNWAPDGRHIAIGLN-------NCQVQLWD 211 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h----~~~V~~v~~s~~g~~la~g~~-------dg~v~iwd 211 (458)
.+.-+.|-..+.++.-.+..||-|+++... .+..-+..| ...|..-..+++.++++..+- .|.+++|.
T Consensus 108 ~VvfWkWis~~~L~lVT~taVyHWs~~~~s-~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS 186 (365)
T 2xzh_A 108 DVTFWKWISLNTVALVTDNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 186 (365)
T ss_dssp CEEEEEECSSSEEEEEESSEEEEEESSTTC-CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccEEEEecCCCeEEEEcCCcEEEEcccCCC-CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEe
Confidence 356688988999999999999999997532 223333322 356778888899998876542 37899999
Q ss_pred CCCceeeEEecCCCcccEEEEEeCC-----CeEEEEeC---CCcEEEEEccCC---C-----eeEEEEc---ccccceEe
Q 012679 212 STANRQLRTLRGGHRSRVGSLAWNN-----HILTTGGM---DGLIINNDVRVR---D-----HIVETYR---GHNQEVCG 272 (458)
Q Consensus 212 ~~~~~~~~~~~~~~~~~v~~l~~~~-----~~l~sg~~---dg~i~vwd~~~~---~-----~~~~~~~---~h~~~v~~ 272 (458)
.+.+. -+.+.+ |.+....+..++ .+++.+.+ .+.+++-++... . +.+..+. ...+---+
T Consensus 187 ~er~~-sQ~ieG-haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVa 264 (365)
T 2xzh_A 187 VDRKV-SQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 264 (365)
T ss_dssp TTTTE-EEEECC-SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEE
T ss_pred ecccc-cceeee-eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEE
Confidence 77653 344554 777766666643 23444433 268888888543 1 1111111 12334456
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 273 LKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 273 l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
+..++.-..+..-+.-|.|++||+.++..
T Consensus 265 mqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 265 MQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred EEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 78888888898999999999999999876
No 311
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.49 E-value=0.15 Score=55.76 Aligned_cols=263 Identities=11% Similarity=0.062 Sum_probs=145.9
Q ss_pred eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-----------------------------
Q 012679 154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN----------------------------- 204 (458)
Q Consensus 154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d----------------------------- 204 (458)
-+++..++.++|..+++-......+++- ...+..++++|+.+.++++..+
T Consensus 708 g~v~~~~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1158)
T 3ei3_A 708 SLALANNSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS 786 (1158)
T ss_dssp EEEEECSSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred cEEEEcCCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence 3445556678888876544334444443 3568889999877766554321
Q ss_pred --------------------CeEEEEeCCCceeeEEecCCCcccEEEEEe---C---CCeEEEEe----------CCCcE
Q 012679 205 --------------------CQVQLWDSTANRQLRTLRGGHRSRVGSLAW---N---NHILTTGG----------MDGLI 248 (458)
Q Consensus 205 --------------------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~---~~~l~sg~----------~dg~i 248 (458)
+.|++.|..+.+.+..+.-.....+.+++. . ..+|+.|+ ..|.|
T Consensus 787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri 866 (1158)
T 3ei3_A 787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI 866 (1158)
T ss_dssp CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence 246777877777776666445555666654 2 36888886 35789
Q ss_pred EEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679 249 INNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS 328 (458)
Q Consensus 249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 328 (458)
.+|++...+.....-....+.|++++-- +| +|++|- .+.|++|++...+. +..-..+-..|..+.....++
T Consensus 867 ~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~------L~~~~~~~~~i~~~~l~~~~~ 937 (1158)
T 3ei3_A 867 VVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKE------LRTECNHYNNIMALYLKTKGD 937 (1158)
T ss_dssp EEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSC------EEEEEEECCCSCEEEEEEETT
T ss_pred EEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCce------EEEEeeccccEEEEEEeccCC
Confidence 9999874321111112346678887643 45 444443 37899999876543 221001111122222222233
Q ss_pred cEEEEeCCCCCCeEEE--EECCCCCeeEEEeC--CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-------ee--
Q 012679 329 NLLATGGGGGDRCIKF--WNTHTGACLNSVDT--GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-------VK-- 395 (458)
Q Consensus 329 ~ll~s~~g~~d~~i~l--wd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-------~~-- 395 (458)
+++.|. .-..|.+ |+...++....-+. ...++++.+-.++ .++. +..+|.|.++.++.. +.
T Consensus 938 -~I~vgD--~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~--aD~~gNl~vl~~~~~~~~~~~~~~L~ 1011 (1158)
T 3ei3_A 938 -FILVGD--LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLG--AENAFNLFVCQKDSAATTDEERQHLQ 1011 (1158)
T ss_dssp -EEEEEE--SSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEE--EETTSEEEEEEECTTCCSTTGGGBEE
T ss_pred -EEEEEE--hhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEE--EcCCCcEEEEecCCCCCCccccceee
Confidence 444443 3344444 45444433332222 3457777776554 4444 557889999877541 11
Q ss_pred -eEEEeCCCCcEEEEEE---cCC---------CCEEEEEeCCCcEEEEecC
Q 012679 396 -MAELSGHTSRVLFMAQ---SPD---------GCTVASAAADETLRFWNVF 433 (458)
Q Consensus 396 -~~~~~~h~~~V~~l~~---spd---------g~~l~s~s~Dg~i~iW~~~ 433 (458)
...+. ....|+++.- .+. ...++-++.+|.|-+.--.
T Consensus 1012 ~~~~fh-lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl 1061 (1158)
T 3ei3_A 1012 EVGLFH-LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSL 1061 (1158)
T ss_dssp EEEEEE-CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEE
T ss_pred eEEEEe-CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEc
Confidence 22222 1345777652 332 2357788899998876543
No 312
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.46 E-value=0.0084 Score=55.27 Aligned_cols=220 Identities=13% Similarity=0.151 Sum_probs=113.1
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----C-----CeEEEEeCCCceeeE--EecCCCcccE
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----N-----CQVQLWDSTANRQLR--TLRGGHRSRV 229 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----d-----g~v~iwd~~~~~~~~--~~~~~~~~~v 229 (458)
..+.+||..+.++..+..+......-..+.+ ++.+++.|+. + ..+.+||..+.+-.. .+.. .....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~ 115 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV-PRNRI 115 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS-CCBTC
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCc-Ccccc
Confidence 4789999998887665444332222222222 6677777765 2 358899988765332 2222 22233
Q ss_pred EEEEeCCCeEEEEeCC-----CcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCC
Q 012679 230 GSLAWNNHILTTGGMD-----GLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSM 298 (458)
Q Consensus 230 ~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~ 298 (458)
..+..++.+++.|+.+ ..+.+||+.+..-.. ..+.........+.+ ++++++.|+.+ +.+.+||+.+
T Consensus 116 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 116 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 4455578888887754 357889987654211 111111111122222 67777777754 4588899876
Q ss_pred CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCe
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERE 373 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~ 373 (458)
..-.. +..+........++.+ +..+++.|+... -..+.+||+.+.+-...-..... -.+++.. ++ .
T Consensus 194 ~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~ 264 (308)
T 1zgk_A 194 NEWRM----ITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QG-R 264 (308)
T ss_dssp TEEEE----CCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-E
T ss_pred CeEee----CCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CC-E
Confidence 54311 1111111111122222 456777765211 25689999988764432222111 1122222 33 4
Q ss_pred EEEEecCC----CCcEEEEeCCCce
Q 012679 374 LLSSHGFT----QNQLTLWKYPSMV 394 (458)
Q Consensus 374 l~~~~g~~----d~~i~iwd~~~~~ 394 (458)
|++..|.. ...+.+||..+.+
T Consensus 265 i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 265 IYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEEcCcCCCcccceEEEEcCCCCE
Confidence 44443432 2457778876543
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.44 E-value=0.0087 Score=54.91 Aligned_cols=228 Identities=15% Similarity=0.186 Sum_probs=112.7
Q ss_pred CCEEEEEecC----CeEEEEeCCCceeeEE--ecCCCcccEEEEEeCCCeEEEEeCCC-----cEEEEEccCCCeeE-EE
Q 012679 195 GRHIAIGLNN----CQVQLWDSTANRQLRT--LRGGHRSRVGSLAWNNHILTTGGMDG-----LIINNDVRVRDHIV-ET 262 (458)
Q Consensus 195 g~~la~g~~d----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~-~~ 262 (458)
+.+++.|+.+ ..+.+||+.+.+-... +.. .......+..++.+++.|+.++ .+.+||..+..-.. ..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPS-RRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCc-ccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 3445555543 3578888877653322 221 1122233455778888887653 58889987664211 11
Q ss_pred EcccccceEeEEEcCCCCEEEEEECCC-----cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679 263 YRGHNQEVCGLKWSASGQQLASGGNDN-----LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 263 ~~~h~~~v~~l~~spd~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~ 337 (458)
+.........+.+ ++++++.|+.++ .+.+||+.+..-.. +..+....... +++.. +..+++.|+..
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~-~~~~~--~~~iyv~GG~~ 165 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH----VAPMNTRRSSV-GVGVV--GGLLYAVGGYD 165 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE----ECCCSSCCBSC-EEEEE--TTEEEEECCEE
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee----cCCCCCcccCc-eEEEE--CCEEEEEeCCC
Confidence 1111111122222 677778887653 57788877654311 11111111111 22222 35677766411
Q ss_pred C-----CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCC----CCcEEEEeCCCceee--EEEeCCCC
Q 012679 338 G-----DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFT----QNQLTLWKYPSMVKM--AELSGHTS 404 (458)
Q Consensus 338 ~-----d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~----d~~i~iwd~~~~~~~--~~~~~h~~ 404 (458)
. -..+.+||..+.+-...-..... -.+++.. ++ .|++..|.. .+.+.+||..+.+-. ..+.....
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~ 243 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR 243 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc
Confidence 1 24588999988764433222111 1122222 33 444444433 246889998775432 22211111
Q ss_pred cEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCCC
Q 012679 405 RVLFMAQSPDGCTVASAAADE-----TLRFWNVFGAP 436 (458)
Q Consensus 405 ~V~~l~~spdg~~l~s~s~Dg-----~i~iW~~~~~~ 436 (458)
.-..+.+ ++++++.|+.++ .+.+||+....
T Consensus 244 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 244 NAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred cCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 1112222 677778887654 48888886553
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.43 E-value=0.012 Score=54.43 Aligned_cols=184 Identities=11% Similarity=0.067 Sum_probs=97.7
Q ss_pred CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----C-------CeEEEEeCCCceeeE--EecCCCc
Q 012679 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----N-------CQVQLWDSTANRQLR--TLRGGHR 226 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----d-------g~v~iwd~~~~~~~~--~~~~~~~ 226 (458)
+..+.+||..++++.. ..+..............++..++.|+. + ..+.+||..+++-.. .+.. ..
T Consensus 12 G~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r 89 (315)
T 4asc_A 12 EEGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS-PR 89 (315)
T ss_dssp TTEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS-CE
T ss_pred CCceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc-ch
Confidence 3789999999988754 444322223333344557888888874 1 127888988765322 1211 11
Q ss_pred ccEEEEEeCCCeEEEEeCC--------CcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEEC-C-----CcE
Q 012679 227 SRVGSLAWNNHILTTGGMD--------GLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGN-D-----NLL 291 (458)
Q Consensus 227 ~~v~~l~~~~~~l~sg~~d--------g~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~-d-----g~i 291 (458)
.....+..++.+++.|+.+ ..+.+||+.+..-.. ..+.........+. .++++++.|+. + +.+
T Consensus 90 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 167 (315)
T 4asc_A 90 CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKM 167 (315)
T ss_dssp ESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCE
T ss_pred hceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceE
Confidence 2223344577888888743 458899987664211 11111111111222 36677777775 2 468
Q ss_pred EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC---CeEEEEECCCCCeeE
Q 012679 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD---RCIKFWNTHTGACLN 354 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d---~~i~lwd~~~~~~~~ 354 (458)
.+||..+..-.. +..+........++.+ +..+++.|+...+ ..+.+||..+.+-..
T Consensus 168 ~~yd~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 168 CVYDPKKFEWKE----LAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp EEEETTTTEEEE----CCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred EEEeCCCCeEEE----CCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 899987654311 1111111111112222 4567777652221 258889998875443
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.42 E-value=0.085 Score=49.60 Aligned_cols=243 Identities=9% Similarity=0.083 Sum_probs=128.3
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec------CCCcccEEEEEeCC-----CeEEEEe-C-------
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR------GGHRSRVGSLAWNN-----HILTTGG-M------- 244 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~------~~~~~~v~~l~~~~-----~~l~sg~-~------- 244 (458)
.....|+|.|+|++|+++...|.|++++.. +.....+. .........|++++ ..|.... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 347899999999845566678999999853 33211111 11234567888863 4444432 2
Q ss_pred CCcEEEEEccCCC----e---eEEEEc---ccccceEeEEEcCCCCEEEEEECC-------------CcEEEEeCCCCCC
Q 012679 245 DGLIINNDVRVRD----H---IVETYR---GHNQEVCGLKWSASGQQLASGGND-------------NLLHIWDRSMASS 301 (458)
Q Consensus 245 dg~i~vwd~~~~~----~---~~~~~~---~h~~~v~~l~~spd~~~l~sg~~d-------------g~i~iwd~~~~~~ 301 (458)
...|..+++.... . ++..+. ........|.|.|||.+.++.+.. |.|.-++....-.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2356666664331 1 111111 111124679999999666654432 4566666553210
Q ss_pred C-Cc-------ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-----------------------
Q 012679 302 N-SV-------TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG----------------------- 350 (458)
Q Consensus 302 ~-~~-------~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~----------------------- 350 (458)
. .. ...+.. .++ .....++|+|....|+++-.| .++.=.|.-+..+
T Consensus 177 ~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp TTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 00 000111 123 335789999965666665432 2211122222111
Q ss_pred --------CeeEEEeCCCCeEEEEEcC-------CCCeEEEEecCCCCcEEEEeCCCceeeEE--E-eCCCCcEEEEEEc
Q 012679 351 --------ACLNSVDTGSQVCALLWNK-------NERELLSSHGFTQNQLTLWKYPSMVKMAE--L-SGHTSRVLFMAQS 412 (458)
Q Consensus 351 --------~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~g~~d~~i~iwd~~~~~~~~~--~-~~h~~~V~~l~~s 412 (458)
.++..+........+.|.. ++..+++ ....+.|...++..++.+.. + .....++..+++.
T Consensus 254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIG--ALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEE--EccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 1122233344567788864 3555555 44677888888776544332 2 2223579999999
Q ss_pred CCCCEEEEEeCCCcEEEEecC
Q 012679 413 PDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 413 pdg~~l~s~s~Dg~i~iW~~~ 433 (458)
|||.+.++.. +..=+||.+.
T Consensus 332 pdG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 332 PDGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp TTSCEEEEEC-STTEEEEEEE
T ss_pred CCCcEEEEEe-CCCCEEEEEe
Confidence 9998666433 2233566653
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.41 E-value=0.011 Score=54.42 Aligned_cols=226 Identities=11% Similarity=0.099 Sum_probs=115.7
Q ss_pred CEEEEEec--CCeEEEEeCCCceeeE--EecCCCcccEEEEEeCCCeEEEEeCC----CcEEEEEccCCCeeE-EEEccc
Q 012679 196 RHIAIGLN--NCQVQLWDSTANRQLR--TLRGGHRSRVGSLAWNNHILTTGGMD----GLIINNDVRVRDHIV-ETYRGH 266 (458)
Q Consensus 196 ~~la~g~~--dg~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~l~sg~~d----g~i~vwd~~~~~~~~-~~~~~h 266 (458)
.+++.|+. ...+.+||..+++-.. .+.. .......+..++.+++.|+.+ ..+.+||+.+..-.. ..+...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFE-KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSC-CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCc-ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 34555654 3478999988865332 2222 222334445678888888865 578889988765311 111111
Q ss_pred ccceEeEEEcCCCCEEEEEECC------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC--
Q 012679 267 NQEVCGLKWSASGQQLASGGND------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG-- 338 (458)
Q Consensus 267 ~~~v~~l~~spd~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~-- 338 (458)
......+.+ ++++++.|+.+ ..+.+||..+..-.. +..+........++.+ +..+++.|+...
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT----KPSMLTQRCSHGMVEA---NGLIYVCGGSLGNN 162 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE----ECCCSSCCBSCEEEEE---TTEEEEECCEESCT
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe----CCCCcCCcceeEEEEE---CCEEEEECCCCCCC
Confidence 111122222 67777888765 468899987654311 1111111111112222 356666664111
Q ss_pred -----CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCCC----CcEEEEeCCCce--eeEEEeCCCCc
Q 012679 339 -----DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFTQ----NQLTLWKYPSMV--KMAELSGHTSR 405 (458)
Q Consensus 339 -----d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~d----~~i~iwd~~~~~--~~~~~~~h~~~ 405 (458)
-..+.+||..+.+-...-..... -.+++.. ++ .|++..|... +.+.+||..+.+ .+..+......
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 35588999988764433222211 1122222 34 3444434322 468899987754 23222211122
Q ss_pred EEEEEEcCCCCEEEEEeCC-----CcEEEEecCCC
Q 012679 406 VLFMAQSPDGCTVASAAAD-----ETLRFWNVFGA 435 (458)
Q Consensus 406 V~~l~~spdg~~l~s~s~D-----g~i~iW~~~~~ 435 (458)
...+.+ ++.+++.|+.+ ..+.+||+...
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 223333 67788888754 45778887654
No 317
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.39 E-value=0.027 Score=52.00 Aligned_cols=182 Identities=13% Similarity=0.148 Sum_probs=95.2
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----CC-------eEEEEeCCCceeeEE--ecCCCcc
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----NC-------QVQLWDSTANRQLRT--LRGGHRS 227 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----dg-------~v~iwd~~~~~~~~~--~~~~~~~ 227 (458)
..+.+||..++++.. ..+..............++..++.|+. ++ .+.+||..+.+-... +.. ...
T Consensus 24 ~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~ 101 (318)
T 2woz_A 24 TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS-ARC 101 (318)
T ss_dssp SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSS-CBC
T ss_pred cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCc-ccc
Confidence 468999999988755 333321222233334557888888873 12 277889877654322 221 122
Q ss_pred cEEEEEeCCCeEEEEeCC-------CcEEEEEccCCCeeEEEEcccccce--EeEEEcCCCCEEEEEEC------CCcEE
Q 012679 228 RVGSLAWNNHILTTGGMD-------GLIINNDVRVRDHIVETYRGHNQEV--CGLKWSASGQQLASGGN------DNLLH 292 (458)
Q Consensus 228 ~v~~l~~~~~~l~sg~~d-------g~i~vwd~~~~~~~~~~~~~h~~~v--~~l~~spd~~~l~sg~~------dg~i~ 292 (458)
.......++.+++.|+.+ ..+.+||+.+..- ..+.....+. .++.. .++++++.|+. -+.+.
T Consensus 102 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 102 LFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--SEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp SCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEE--EEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEE
T ss_pred ccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCE--eECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEE
Confidence 233445578888888764 2477888876542 2221111110 11122 36777777764 24588
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC---CeEEEEECCCCCeeE
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD---RCIKFWNTHTGACLN 354 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d---~~i~lwd~~~~~~~~ 354 (458)
+||+.+..-.. +..+....... +++.. +..+++.||...+ ..+.+||..+.+-..
T Consensus 179 ~yd~~~~~W~~----~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 179 IYNPKKGDWKD----LAPMKTPRSMF-GVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp EEETTTTEEEE----ECCCSSCCBSC-EEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred EEcCCCCEEEE----CCCCCCCcccc-eEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 99987754311 11111111111 22222 3567777642222 357789998876443
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.37 E-value=0.11 Score=49.60 Aligned_cols=155 Identities=12% Similarity=0.213 Sum_probs=106.5
Q ss_pred cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCC----CCCEEEEEEcCCCCEEEEEe-------cCCeEEEEeC
Q 012679 144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDE----NGPVTSVNWAPDGRHIAIGL-------NNCQVQLWDS 212 (458)
Q Consensus 144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h----~~~V~~v~~s~~g~~la~g~-------~dg~v~iwd~ 212 (458)
+.-+.|-..+.++.-.+..||-|+++... .+..-+..| ...|..-..+++.++++..+ -.|.+++|..
T Consensus 108 VvfWkWis~~~l~lVT~taVyHWsi~~~s-~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 186 (494)
T 1bpo_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (494)
T ss_dssp CCEEEEEETTEEEEECSSEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred ceEEEecCCCeEEEEcCCeeEEecccCCC-CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec
Confidence 55688888999999999999999997522 223333332 45688888899999887643 2478999997
Q ss_pred CCceeeEEecCCCcccEEEEEeCC-----CeEEEEeCC---CcEEEEEccCC---C-----eeEEEEc---ccccceEeE
Q 012679 213 TANRQLRTLRGGHRSRVGSLAWNN-----HILTTGGMD---GLIINNDVRVR---D-----HIVETYR---GHNQEVCGL 273 (458)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~l~~~~-----~~l~sg~~d---g~i~vwd~~~~---~-----~~~~~~~---~h~~~v~~l 273 (458)
+.+. -+.+.+ |.+....+..++ .+++.+.+. +.+++-++... . ..+..+. .-.+--.++
T Consensus 187 er~~-sQ~ieG-haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam 264 (494)
T 1bpo_A 187 DRKV-SQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (494)
T ss_dssp TTCC-EEEECC-SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred cccc-cchhee-eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence 7543 344555 887777777754 345555443 78999998543 1 1111111 123344568
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 274 KWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 274 ~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
..++.-..+..-+.-|.|++||+.++..
T Consensus 265 qvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 265 QISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred EecccCCEEEEEecCceEEEEeccccee
Confidence 8888888899999999999999999876
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.36 E-value=0.028 Score=52.76 Aligned_cols=165 Identities=10% Similarity=0.071 Sum_probs=98.9
Q ss_pred cCCeEEEEeCCCce-eeEE--ecCC----CcccEEEEEe----CCC-eEEEE-eC--CCcEEEEEccCCCe---eEEEEc
Q 012679 203 NNCQVQLWDSTANR-QLRT--LRGG----HRSRVGSLAW----NNH-ILTTG-GM--DGLIINNDVRVRDH---IVETYR 264 (458)
Q Consensus 203 ~dg~v~iwd~~~~~-~~~~--~~~~----~~~~v~~l~~----~~~-~l~sg-~~--dg~i~vwd~~~~~~---~~~~~~ 264 (458)
.+|.|.++|..+.. .... +.+. ..-....+.+ ++. +|+.+ .. +..|.+|++..... .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68899999987321 1122 2221 2235566665 233 34443 33 46778887765432 223333
Q ss_pred cc-ccceEeEEEcCCCCEEEEEEC-----------------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679 265 GH-NQEVCGLKWSASGQQLASGGN-----------------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 265 ~h-~~~v~~l~~spd~~~l~sg~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
+. -...+.+.+.++|.+.++... .|.|..+|. .+ +..+...-..-+.++|+|+
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-------~~~~~~~l~~pNGia~spD 231 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-------VRVVAEGFDFANGINISPD 231 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-------CEEEEEEESSEEEEEECTT
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-------EEEeecCCcccCcceECCC
Confidence 22 235788999999987777541 245555554 22 2222223345688999999
Q ss_pred CCcEEEEeCCCCCCeEEEEECCC-CCe--eEEEeCCCCeEEEEEcC-CCCeEEEEe
Q 012679 327 QSNLLATGGGGGDRCIKFWNTHT-GAC--LNSVDTGSQVCALLWNK-NERELLSSH 378 (458)
Q Consensus 327 ~~~ll~s~~g~~d~~i~lwd~~~-~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~ 378 (458)
+..++++-+ ..+.|..|++.. +.. ...+......-.++..+ +|+..+++.
T Consensus 232 g~~lYvadt--~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 232 GKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp SSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred CCEEEEEeC--CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 988888876 678999999863 432 23444556678899999 588777653
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.36 E-value=0.099 Score=49.11 Aligned_cols=223 Identities=12% Similarity=0.102 Sum_probs=118.9
Q ss_pred ceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEec---CCCCCEEEEEEcCC---CCEEEEEecC------CeEEEEe
Q 012679 145 NLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVD---DENGPVTSVNWAPD---GRHIAIGLNN------CQVQLWD 211 (458)
Q Consensus 145 ~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~---~h~~~V~~v~~s~~---g~~la~g~~d------g~v~iwd 211 (458)
..+.|.+ ++++++..++.|++++ +++...+..+. ........|+|+|+ +..|.++... +.|..|+
T Consensus 34 ~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 34 WALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred eEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 4566766 5677888889999998 45544343332 22456899999998 5666555432 5788888
Q ss_pred CCCce-----e-eEEec--CCCcccEEEEEe--CCCeEEEEeC-------------CCcEEEEEccCC------------
Q 012679 212 STANR-----Q-LRTLR--GGHRSRVGSLAW--NNHILTTGGM-------------DGLIINNDVRVR------------ 256 (458)
Q Consensus 212 ~~~~~-----~-~~~~~--~~~~~~v~~l~~--~~~~l~sg~~-------------dg~i~vwd~~~~------------ 256 (458)
...+. . +..+. .........|+| ++.+.++.+. .|.|.-++....
T Consensus 112 ~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~ 191 (352)
T 2ism_A 112 HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRG 191 (352)
T ss_dssp ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTT
T ss_pred eCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCC
Confidence 76431 1 12232 111122356777 4655555332 255666665430
Q ss_pred CeeEEEEcccccceEeEEEcC-CCCEEEEEECCCc--------EEEEeCCCCCC------------CCcceeeeeecccc
Q 012679 257 DHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNL--------LHIWDRSMASS------------NSVTQWLHRLEEHT 315 (458)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~--------i~iwd~~~~~~------------~~~~~~~~~~~~h~ 315 (458)
........++ .....++|+| ++.++++-...+. |.+.. .+.. .....++..+..|
T Consensus 192 ~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~- 267 (352)
T 2ism_A 192 ARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYFWPQG- 267 (352)
T ss_dssp SCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC-
T ss_pred CCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEecCCC-
Confidence 0000111233 2356899999 6665555433332 33332 2210 0001223333222
Q ss_pred cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-------eeEEEeCCCCeEEEEEcCCCCeEEEE
Q 012679 316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-------CLNSVDTGSQVCALLWNKNERELLSS 377 (458)
Q Consensus 316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~ 377 (458)
.....++|. ...++++.- ..+.|...++.... ....+.....+..+++.|+|..+++.
T Consensus 268 ~ap~G~~~~--~G~l~v~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 268 FPPGNLAFF--RGDLYVAGL--RGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CCEEEEEEE--TTEEEEEET--TTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCcceEEE--CCEEEEEEC--CCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 345667773 345666554 56778777766433 11122334678899999999777664
No 321
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.33 E-value=0.027 Score=51.91 Aligned_cols=161 Identities=8% Similarity=0.044 Sum_probs=105.4
Q ss_pred ccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCCCcceeeeeecc----c--ccceeEEEe---cCCCCcEEEEe
Q 012679 265 GHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSNSVTQWLHRLEE----H--TSAVKAIAW---CPFQSNLLATG 334 (458)
Q Consensus 265 ~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---~p~~~~ll~s~ 334 (458)
.....-.++.|++....|..++ ..++|..||...+... .+ .+.. . ...+..|.| .|+ ..|+++.
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~----~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~ 83 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF----NV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVM 83 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE----EE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE----EE-ecCCccccCCCcceeeEEEEeccCCC-CcEEEEE
Confidence 3344456789988666666666 7899999998644321 01 2221 0 124578999 686 5555532
Q ss_pred C-C----------CCCCeEEEEECC---CCCeeEEEeCC--------------CCeEEEEEcCCCCeEEEEecCCC-CcE
Q 012679 335 G-G----------GGDRCIKFWNTH---TGACLNSVDTG--------------SQVCALLWNKNERELLSSHGFTQ-NQL 385 (458)
Q Consensus 335 ~-g----------~~d~~i~lwd~~---~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~g~~d-~~i 385 (458)
. + +.++.|..+|+. +++.+...... .....++..++|+..++.+ .. +.|
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s--~~~~~I 161 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA--LGMPAI 161 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE--ESSCEE
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC--CCCCeE
Confidence 1 0 126789999999 88888776532 2378999999999888733 34 666
Q ss_pred EEEeCCCceeeEEEe-C-----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 386 TLWKYPSMVKMAELS-G-----HTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 386 ~iwd~~~~~~~~~~~-~-----h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
..++.... .+..+. . .....+.|+++|+|..|++...+|.|.-+|+..
T Consensus 162 ~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 162 ARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 66665433 222221 1 112367999999999998887799999999874
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.22 E-value=0.036 Score=52.70 Aligned_cols=142 Identities=8% Similarity=0.093 Sum_probs=100.4
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce------------
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDD--ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR------------ 216 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~--h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~------------ 216 (458)
.+.-+..+.++.|+.-++..+...+...++. .-+.|..+..+|+|++||..+.. .|.|-.+..+.
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccccccc
Confidence 3566777888999999988555444555553 12358889999999999998665 78888876321
Q ss_pred eeEEecCC-----CcccEEEEEeC-----CCeEEEEeCCCcEEEEEccCCC-eeEEEEc---------ccccceEeEEEc
Q 012679 217 QLRTLRGG-----HRSRVGSLAWN-----NHILTTGGMDGLIINNDVRVRD-HIVETYR---------GHNQEVCGLKWS 276 (458)
Q Consensus 217 ~~~~~~~~-----~~~~v~~l~~~-----~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~---------~h~~~v~~l~~s 276 (458)
..+.+..+ ...+|..+-|+ +..|++-..|+.|++||+.... .+. .+. .....|.+++|.
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEEC
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEc
Confidence 12233321 25779999996 4789999999999999998632 112 222 223678999999
Q ss_pred CCCCEEEEEE--CCCcEEEE
Q 012679 277 ASGQQLASGG--NDNLLHIW 294 (458)
Q Consensus 277 pd~~~l~sg~--~dg~i~iw 294 (458)
.++-.|...+ .+|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9888777755 77888654
No 323
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.06 E-value=0.4 Score=50.06 Aligned_cols=266 Identities=12% Similarity=0.083 Sum_probs=147.7
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
.+.++.-.. +.+..++ ++-+..||..+.+... ........|.++.. .+| .|.+|+.+ -|..+|..+++.....
T Consensus 64 ~i~~i~~d~~g~lWigT-~~Gl~~yd~~~~~f~~--~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 64 RIYCGVIIDNTYLYMGT-DNGILVYNYRADRYEQ--PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp CEEEEEEETTTEEEEEE-TTEEEEEETTTTEECC--CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred eEEEEEEcCCCcEEEEe-CCCeEEEeCCCCEEEC--cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence 344444444 4455555 4568999988765432 11112345777764 344 57777776 5888998766543221
Q ss_pred c---CCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcc----cccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 222 R---GGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRG----HNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 222 ~---~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~----h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
. ......|.++..+ ...|..|+..| |..++..+.......... ....|.++....++..|..|+. +-+..
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~ 215 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQ 215 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEE
T ss_pred cCCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeE
Confidence 1 1123568888875 45566666654 777887654321111111 1224788888777776666664 45888
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--------CCCCeEEE
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--------TGSQVCAL 365 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--------~~~~v~~~ 365 (458)
+|..+.... ....+ ....|.++....++...+.+ . +-+.+++..++....... ....|.++
T Consensus 216 ~~~~~~~~~----~~~~l--~~~~i~~i~~d~~g~lWigT----~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 284 (758)
T 3ott_A 216 YFPSTGQIK----QTEAF--HNNSIKSLALDGNGDLLAGT----D-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNI 284 (758)
T ss_dssp EETTTTEEE----EEEEE--EEEEEEEEEECTTCCEEEEE----T-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEE
T ss_pred EcCCCCeEE----eccCC--CCCeEEEEEEcCCCCEEEEe----C-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEE
Confidence 887654321 11111 23458888887765544443 3 357888887765432211 12348888
Q ss_pred EEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-----CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-----GHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-----~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
....++...+.+ ..| +.++.....-...... .....|.++....+|.+.+ |+.+| +..++..
T Consensus 285 ~~D~~g~lWiGT---~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~ 351 (758)
T 3ott_A 285 FADQEHNIWLGT---DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDP 351 (758)
T ss_dssp EECTTCCEEEEE---SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCT
T ss_pred EEcCCCCEEEEe---CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeeccc
Confidence 888888776653 345 5554432211111110 1234688998888887665 45555 5555543
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.04 E-value=0.047 Score=50.29 Aligned_cols=211 Identities=11% Similarity=0.083 Sum_probs=100.9
Q ss_pred EEEEEecCCeEEEEeCCCceeeE-EecCC-CcccEEEEEeCCCeEEEEeC----C-------CcEEEEEccCCCeeEEEE
Q 012679 197 HIAIGLNNCQVQLWDSTANRQLR-TLRGG-HRSRVGSLAWNNHILTTGGM----D-------GLIINNDVRVRDHIVETY 263 (458)
Q Consensus 197 ~la~g~~dg~v~iwd~~~~~~~~-~~~~~-~~~~v~~l~~~~~~l~sg~~----d-------g~i~vwd~~~~~~~~~~~ 263 (458)
+++.|+ ..+.+||..+++-.. .+... .......+..++.+++.|+. + ..+.+||..+..- ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence 344555 479999998887433 22110 11222233347788888884 1 1277888876542 222
Q ss_pred cccc---cceEeEEEcCCCCEEEEEECC--------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679 264 RGHN---QEVCGLKWSASGQQLASGGND--------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332 (458)
Q Consensus 264 ~~h~---~~v~~l~~spd~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~ 332 (458)
..-. .....+.+ ++.+++.|+.+ +.+.+||..+..-.. +..+....... +++.. +..+++
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~-~~~~~--~~~iyv 153 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE----SDPLPYVVYGH-TVLSH--MDLVYV 153 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE----CCCCSSCCBSC-EEEEE--TTEEEE
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE----CCCCCCcccce-eEEEE--CCEEEE
Confidence 1111 11111222 66677777732 458889987654311 11111111111 12222 356777
Q ss_pred EeCCCC----CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCCCC----cEEEEeCCCceeeE--EEe
Q 012679 333 TGGGGG----DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFTQN----QLTLWKYPSMVKMA--ELS 400 (458)
Q Consensus 333 s~~g~~----d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~d~----~i~iwd~~~~~~~~--~~~ 400 (458)
.||... -..+.+||..+.+-...-....+ -.+++.. ++ .|++..|..+. .+.+||..+.+-.. .+.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p 231 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP 231 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCC
Confidence 765211 24689999988754332222211 1122222 33 44444454332 57888887754322 221
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCC
Q 012679 401 GHTSRVLFMAQSPDGCTVASAAAD 424 (458)
Q Consensus 401 ~h~~~V~~l~~spdg~~l~s~s~D 424 (458)
........+.+ ++++++.|+.+
T Consensus 232 ~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 232 QERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp SCCBSCEEEEE--TTEEEEEEEEE
T ss_pred CcccceeEEEE--CCEEEEECCcc
Confidence 11111122223 66777878764
No 325
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.03 E-value=0.42 Score=49.88 Aligned_cols=228 Identities=14% Similarity=0.076 Sum_probs=132.8
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
...|.+|.-..+|. |-.|+.+| +..||-...+............|.++.-+ ...|..|+.+| +..||..+... ..
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f-~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRY-EQ 96 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEE-CC
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEE-EC
Confidence 46799998888875 66788887 66677433221111111134568887764 56788888765 78899876432 11
Q ss_pred EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-----ccccceeEEEecCCCCcEEEEeCC
Q 012679 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-----EHTSAVKAIAWCPFQSNLLATGGG 336 (458)
Q Consensus 262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~ll~s~~g 336 (458)
........|.++.. .++ .|..|+.+ -|..+|..+... ..+. .....|.++....++...+.+
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-------~~~~~~~~~l~~~~i~~i~~d~~g~lWigt--- 163 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-------TSFDTRRNGLPNNTIYSIIRTKDNQIYVGT--- 163 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-------EEECHHHHCCSCSCEEEEEECTTCCEEEEE---
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-------EEeccCCCCcCCCeEEEEEEcCCCCEEEEe---
Confidence 11112234666654 344 56666665 688888765432 2221 123457888877754444432
Q ss_pred CCCCeEEEEECCCCCeeEEEeC-------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679 337 GGDRCIKFWNTHTGACLNSVDT-------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFM 409 (458)
Q Consensus 337 ~~d~~i~lwd~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l 409 (458)
. +-|..+|..+++... +.. ...|.++...+++..|.+++ ++-+..++..+.+......-....|.++
T Consensus 164 -~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt---~~Gl~~~~~~~~~~~~~~~l~~~~i~~i 237 (758)
T 3ott_A 164 -Y-NGLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGT---EGYLFQYFPSTGQIKQTEAFHNNSIKSL 237 (758)
T ss_dssp -T-TEEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEE---EEEEEEEETTTTEEEEEEEEEEEEEEEE
T ss_pred -C-CCHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEE---CCCCeEEcCCCCeEEeccCCCCCeEEEE
Confidence 3 357788887765332 211 12378888888777655532 2458888877654322111123458889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 410 AQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 410 ~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
....+|.+.+ |+.+ -|.+++....
T Consensus 238 ~~d~~g~lWi-gT~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 238 ALDGNGDLLA-GTDN-GLYVYHNDTT 261 (758)
T ss_dssp EECTTCCEEE-EETT-EEEEECCTTS
T ss_pred EEcCCCCEEE-EeCC-ceeEEecCCC
Confidence 9888887666 4444 4777776543
No 326
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.02 E-value=0.045 Score=51.34 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=94.4
Q ss_pred ceEeEEEcCCCCEEEEEE------------CCCcEEEEeCCCCCCCCcceeeeeecc-----cccceeEEEecC--CCC-
Q 012679 269 EVCGLKWSASGQQLASGG------------NDNLLHIWDRSMASSNSVTQWLHRLEE-----HTSAVKAIAWCP--FQS- 328 (458)
Q Consensus 269 ~v~~l~~spd~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~p--~~~- 328 (458)
..-.+...|+|..+++++ .+|.|.++|........ +.+ .+.+ .......+.+.+ ++.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~--~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~ 127 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV--SEL-EIIGNTLDISSFNPHGISTFIDDDNTV 127 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE--EEC-EEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce--EEE-EccCCCCCcCceeeeeeEEEECCCCcE
Confidence 344566778776555542 68999999987543211 111 1211 223455666654 233
Q ss_pred cEEEEeCCCCCCeEEEEECCCCC-e---eEEEeC--CCCeEEEEEcCCCCeEEEEec-C--------------CCCcEEE
Q 012679 329 NLLATGGGGGDRCIKFWNTHTGA-C---LNSVDT--GSQVCALLWNKNERELLSSHG-F--------------TQNQLTL 387 (458)
Q Consensus 329 ~ll~s~~g~~d~~i~lwd~~~~~-~---~~~~~~--~~~v~~~~~s~~~~~l~~~~g-~--------------~d~~i~i 387 (458)
+++++..+..+..|.+|++..+. . +..+.. -...+.+.+.++|.+.++... + ..|.|.-
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 57777654446788888876542 2 223332 235789999999987776421 1 1244555
Q ss_pred EeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 012679 388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNVFG 434 (458)
Q Consensus 388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~ 434 (458)
++.. + +..+...-...+.++||||+++|..+. ..+.|..|++..
T Consensus 208 ~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 208 YSPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 5543 2 222222234568999999998776665 578899999864
No 327
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.99 E-value=0.083 Score=49.50 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCEEEEEECCC--CCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEec-C---------CeEEEEeCCCceeeEE--ecCC
Q 012679 160 GSTVYLWDASD--GTTSELVTVD-DENGPVTSVNWAPDGRHIAIGLN-N---------CQVQLWDSTANRQLRT--LRGG 224 (458)
Q Consensus 160 d~~v~iwd~~~--~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~-d---------g~v~iwd~~~~~~~~~--~~~~ 224 (458)
.+.+++||..+ .++..+..+. .....-.++.+ ++++++.|+. + ..+.+||+.+.+-... +...
T Consensus 30 ~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~ 107 (357)
T 2uvk_A 30 GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPM 107 (357)
T ss_dssp TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSS
T ss_pred CCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCc
Confidence 45799999874 6665555444 22222223333 5677777765 2 3689999987653322 2201
Q ss_pred CcccEEEEEeCCCeEEEEeCC
Q 012679 225 HRSRVGSLAWNNHILTTGGMD 245 (458)
Q Consensus 225 ~~~~v~~l~~~~~~l~sg~~d 245 (458)
......++..++.+++.|+.+
T Consensus 108 ~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 108 GMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp CCSSEEEEEETTEEEEEECCC
T ss_pred ccccceEEEECCEEEEEeCcC
Confidence 222334455788888999865
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.91 E-value=0.27 Score=45.82 Aligned_cols=237 Identities=13% Similarity=0.112 Sum_probs=125.8
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee--eEEec---CCCcccEEEEEeCC-----CeEEEE---eCC
Q 012679 179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ--LRTLR---GGHRSRVGSLAWNN-----HILTTG---GMD 245 (458)
Q Consensus 179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~--~~~~~---~~~~~~v~~l~~~~-----~~l~sg---~~d 245 (458)
+...-.....|+|.|||.++++--..|.|++++...++. +..+. .........|++++ ..|... ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333345689999999999766655489999998765543 22221 11345678899964 334432 244
Q ss_pred CcEEEEEccCC----------CeeEEEEc-ccccceEeEEEcCCCCEEEEEEC-------------CCcEEEEeCCCCCC
Q 012679 246 GLIINNDVRVR----------DHIVETYR-GHNQEVCGLKWSASGQQLASGGN-------------DNLLHIWDRSMASS 301 (458)
Q Consensus 246 g~i~vwd~~~~----------~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~-------------dg~i~iwd~~~~~~ 301 (458)
+.|.-|.+... +.++..+. ........|.|.|||.+.++.+. .|.|.-.+....-.
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 56666665541 11222232 11223467999999988777553 24454445432200
Q ss_pred C-Cc--ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC------------------eeEEEeCC-
Q 012679 302 N-SV--TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA------------------CLNSVDTG- 359 (458)
Q Consensus 302 ~-~~--~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~------------------~~~~~~~~- 359 (458)
. .. ...+. -.+|. ....++|+|+ ..|+++-.| .|+.=.|--+..|. ++..+...
T Consensus 187 ~~nPf~~~~i~-a~G~R-Np~Gla~dp~-G~L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 187 PGNPFPGSPVY-SYGHR-NVQGLAWDDK-QRLFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp TTCSSTTCCEE-EBCCS-BCCEEEECTT-CCEEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred CCCCCCCCeEE-eeCCC-CcceEEECCC-CCEEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 0 00 00011 12343 3468999996 556665432 33322222222221 12222222
Q ss_pred CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee----eEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679 360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK----MAELSGHTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 360 ~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~----~~~~~~h~~~V~~l~~spdg~~l~s~s 422 (458)
.....++|.. +..++. ....+.|....+..... ..-+.+...++..|+..|||.++++..
T Consensus 263 ~ap~G~~~~~-g~~~~~--~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYAE-GSVWMA--GLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEET-TEEEEE--ESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCcceEEEc-Cceeec--cccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 2456677763 444443 34556666666654432 222344457899999999998776654
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.87 E-value=0.08 Score=48.53 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=97.6
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEeCCCceeeEE--ecCCCcccEEEEE
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-----CQVQLWDSTANRQLRT--LRGGHRSRVGSLA 233 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~ 233 (458)
+.+.+||..+.++..+..+......-..+.+ +++.++.|+.+ ..+.+||..+.+-... +.. ......++.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-cccceEEEE
Confidence 4689999998887665544432223333333 67777777643 3688999887653322 221 222234445
Q ss_pred eCCCeEEEEeCC-----CcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCCCCC
Q 012679 234 WNNHILTTGGMD-----GLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMASSN 302 (458)
Q Consensus 234 ~~~~~l~sg~~d-----g~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~~~~ 302 (458)
+++.+++.|+.+ ..+.+||+.+..-.. ..+.........+.+ ++++++.|+.+ ..+.+||+.+..-.
T Consensus 167 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 167 LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 578888888765 458899987654211 111111111222222 67777877764 56899998775431
Q ss_pred CcceeeeeecccccceeEEEecCCCCcEEEEeCCC---CCCeEEEEECCCCCee
Q 012679 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG---GDRCIKFWNTHTGACL 353 (458)
Q Consensus 303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~---~d~~i~lwd~~~~~~~ 353 (458)
. +..+.........+.+ +..+++.|+.. .-..+.+||..+.+-.
T Consensus 245 ~----~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 245 F----VAPMKHRRSALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp E----CCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred E----CCCCCCCccceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 1 1111111111112222 35677766411 1245778888776543
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.81 E-value=0.024 Score=53.33 Aligned_cols=238 Identities=11% Similarity=0.031 Sum_probs=110.6
Q ss_pred CCCEEEEEecC-CeEEEEeCCC--ce--eeEEecCCCcccEEEEEeCCCeEEEEeC-C---------CcEEEEEccCCCe
Q 012679 194 DGRHIAIGLNN-CQVQLWDSTA--NR--QLRTLRGGHRSRVGSLAWNNHILTTGGM-D---------GLIINNDVRVRDH 258 (458)
Q Consensus 194 ~g~~la~g~~d-g~v~iwd~~~--~~--~~~~~~~~~~~~v~~l~~~~~~l~sg~~-d---------g~i~vwd~~~~~~ 258 (458)
++.+++.|+.+ ..+.+||..+ .+ .+..+.........++..++.+++.|+. + ..+.+||+.+..-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 45555555432 3678888764 22 2222220022233445557888888876 2 4688999887642
Q ss_pred eE-EEEc-ccccceEeEEEcCCCCEEEEEECC---------------------------------------CcEEEEeCC
Q 012679 259 IV-ETYR-GHNQEVCGLKWSASGQQLASGGND---------------------------------------NLLHIWDRS 297 (458)
Q Consensus 259 ~~-~~~~-~h~~~v~~l~~spd~~~l~sg~~d---------------------------------------g~i~iwd~~ 297 (458)
.. ..+. .......++. .++++++.|+.+ +.+.+||..
T Consensus 99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred EECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 11 1111 1111111222 477788888865 578899987
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC----CCCeEEEEEC--CCCCeeEEEeC--CCC-eEEEEEc
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG----GDRCIKFWNT--HTGACLNSVDT--GSQ-VCALLWN 368 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~----~d~~i~lwd~--~~~~~~~~~~~--~~~-v~~~~~s 368 (458)
+..-.. +..+......-.+++.. +..+++.|+.. ....+.+||+ .+.+-...-.. ... ....+..
T Consensus 177 ~~~W~~----~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 177 TQQWSY----AGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp TTEEEE----EEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred CCcEEE----CCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence 754311 11111101110122222 45677666411 1345777876 44432221111 111 1111222
Q ss_pred CCCCeEEEEecCCC---------------------CcEEEEeCCCc--eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679 369 KNERELLSSHGFTQ---------------------NQLTLWKYPSM--VKMAELSGHTSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 369 ~~~~~l~~~~g~~d---------------------~~i~iwd~~~~--~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
.+++ |++..|... ..+.+||..+. +.+..+......-.++ .-++++++.||.++
T Consensus 251 ~~~~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 251 SNDS-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETA 327 (357)
T ss_dssp ETTE-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECG
T ss_pred ECCE-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCC
Confidence 2344 444434211 25778888754 4444443222222222 23778888888653
Q ss_pred ------cEEEEecCCCCcccccC
Q 012679 426 ------TLRFWNVFGAPQVISKS 442 (458)
Q Consensus 426 ------~i~iW~~~~~~~~~~~~ 442 (458)
.|.+.++.+++......
T Consensus 328 ~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp GGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CCCEeeeEEEEEEcCcEeEeeec
Confidence 35555777766655444
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.027 Score=52.42 Aligned_cols=200 Identities=11% Similarity=0.044 Sum_probs=107.9
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCC-CCCEEEEEE--cC-CCCEEEEE-ecCCeEEEEeCCCceeeEEecCC--
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDE-NGPVTSVNW--AP-DGRHIAIG-LNNCQVQLWDSTANRQLRTLRGG-- 224 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h-~~~V~~v~~--s~-~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~-- 224 (458)
+.+++++.||.|+-.|..+|+. +.+++.. ..++....- .+ ++..++.. +.||.|..++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~--~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI--IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE--EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE--EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 5688889999999999999987 5555432 122222110 01 23333333 68999999999888655444321
Q ss_pred -CcccEEE---EEe-------CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc------eEeEEEc-----CCCCEE
Q 012679 225 -HRSRVGS---LAW-------NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE------VCGLKWS-----ASGQQL 282 (458)
Q Consensus 225 -~~~~v~~---l~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~------v~~l~~s-----pd~~~l 282 (458)
...++.. ... .+..+++|+.+|.+...|+++++.+...-.+.... ..|.... ..+..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1122221 001 46788999999999999999988643322221110 0011110 124567
Q ss_pred EEEECCCcEEEEeCCCCCCCCcceeeeeec---cccc--cee-EEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE-E
Q 012679 283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLE---EHTS--AVK-AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN-S 355 (458)
Q Consensus 283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~--~v~-~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~-~ 355 (458)
+.|..+..+.+.+ +++. .+...+. .... .+. .-..+.++.. +++ + .||.|.-+|..+|..+. .
T Consensus 169 ~ig~~~y~v~~~~-~sG~-----~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~-~--~dg~v~A~d~~~G~~~W~~ 238 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-----SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAP-F--RDKSLLASDLDFRIARWVS 238 (339)
T ss_dssp EEEEEEEECEECC-TTSC-----CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEE-E--TTTEEEEECSTTCCEEEEC
T ss_pred EEecceEEEEEEC-CCCC-----eEEEecccccccccccccccccccccCCcE-EEE-C--CCCEEEEEECCCCcEEEEe
Confidence 7777777777766 3332 1111111 1100 000 0001123344 333 2 79999999999999876 5
Q ss_pred EeCCCCeE
Q 012679 356 VDTGSQVC 363 (458)
Q Consensus 356 ~~~~~~v~ 363 (458)
.+..+++.
T Consensus 239 ~~l~sPv~ 246 (339)
T 2be1_A 239 PTFPGIIV 246 (339)
T ss_dssp CCCSSCEE
T ss_pred ecCCCCeE
Confidence 55555543
No 332
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.74 E-value=0.073 Score=55.09 Aligned_cols=190 Identities=13% Similarity=0.100 Sum_probs=103.2
Q ss_pred CEEEEEECCCCCeeeEE-E-----ecCCCCCEEEEEEcCCCCEEEEEecCC------eEEEEeCCCceeeE--EecCCCc
Q 012679 161 STVYLWDASDGTTSELV-T-----VDDENGPVTSVNWAPDGRHIAIGLNNC------QVQLWDSTANRQLR--TLRGGHR 226 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~-~-----~~~h~~~V~~v~~s~~g~~la~g~~dg------~v~iwd~~~~~~~~--~~~~~~~ 226 (458)
+.+.+||..++++..+. . +......-.++.+..+++.++.|+.++ .+.+||..+.+-.. .+.. ..
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-TR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-CC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-Cc
Confidence 46999999999886665 3 222122223333433777888887543 58899988754322 2222 22
Q ss_pred ccEEEEEe-CCCeEEEEeCCC--cEEEEEccCCCeeEEE----EcccccceEeEEEcCC-CCEEEEEEC--C-----CcE
Q 012679 227 SRVGSLAW-NNHILTTGGMDG--LIINNDVRVRDHIVET----YRGHNQEVCGLKWSAS-GQQLASGGN--D-----NLL 291 (458)
Q Consensus 227 ~~v~~l~~-~~~~l~sg~~dg--~i~vwd~~~~~~~~~~----~~~h~~~v~~l~~spd-~~~l~sg~~--d-----g~i 291 (458)
....++.+ ++.+++.|+.++ .+.+||+.+....... .........++.+..+ +++++.||. + +.+
T Consensus 491 ~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v 570 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKA 570 (695)
T ss_dssp BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEE
T ss_pred ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcE
Confidence 23344454 788888888765 6899999876532111 1111122233555555 667777775 2 458
Q ss_pred EEEeCCCCCCCCccee--eeeec-ccccceeEEEecCCCCcEEEEeCCC------CCCeEEEEECCCCCee
Q 012679 292 HIWDRSMASSNSVTQW--LHRLE-EHTSAVKAIAWCPFQSNLLATGGGG------GDRCIKFWNTHTGACL 353 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~--~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~------~d~~i~lwd~~~~~~~ 353 (458)
.+||+.+........+ +.... .......++.+ . ...+++.||.+ ....+.+||..+.+..
T Consensus 571 ~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 571 IIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-T-PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-E-TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEEccCCccccceEEEEcCCCCCCCcccceEEEe-C-CCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 8999887762000011 11110 00111122222 2 15677766522 2356999999887654
No 333
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.72 E-value=0.32 Score=44.46 Aligned_cols=212 Identities=6% Similarity=-0.044 Sum_probs=113.5
Q ss_pred CCCCEEEEEe--cCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCC--------------CcEEEEEccCC
Q 012679 193 PDGRHIAIGL--NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMD--------------GLIINNDVRVR 256 (458)
Q Consensus 193 ~~g~~la~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d--------------g~i~vwd~~~~ 256 (458)
.+|.+|+... .++.|...+..... ...+.. ..+..+..++..|+-.... ..|+..++...
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~---~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN---DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE---EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC---CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 3555555543 23455555543332 333321 1244555566665555432 35666676655
Q ss_pred CeeEEEEcccccceEeEEEcCCCCEEEEEE--C--CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679 257 DHIVETYRGHNQEVCGLKWSASGQQLASGG--N--DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332 (458)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~--~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~ 332 (458)
+. ..+... . +..|+++++.|+-.. . +..|+..++.... ...+..+.. .++++++..++.
T Consensus 99 ~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-------~~~lt~~~~----~~~~~~g~~iy~ 161 (302)
T 3s25_A 99 GS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-------KKKIKNHYL----FTCNTSDRYFYY 161 (302)
T ss_dssp CC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-------CEEEESSCC----CCSEEETTEEEE
T ss_pred cc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-------eEEEeCCCc----eEeeEECCEEEE
Confidence 42 222221 1 236778899988776 2 3455555655332 233433332 456777888888
Q ss_pred EeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEc
Q 012679 333 TGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS 412 (458)
Q Consensus 333 s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~s 412 (458)
+.. ....|..-++..+.....+. .... ..+.|++..|+-+.......|..-++..... ..+. ...+ ..|+
T Consensus 162 t~~--g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~ 231 (302)
T 3s25_A 162 NNP--KNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT--EANI--EHYN 231 (302)
T ss_dssp ECT--TTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS--CSCE--EEEE
T ss_pred EeC--CCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe--CCCc--ceEE
Confidence 764 56789999987665443333 2222 3456999998876543334676666665442 2332 1223 2367
Q ss_pred CCCCEEEEEeC--CCcEEEEecCCC
Q 012679 413 PDGCTVASAAA--DETLRFWNVFGA 435 (458)
Q Consensus 413 pdg~~l~s~s~--Dg~i~iW~~~~~ 435 (458)
|++..|.-++. .+.|..-++.+.
T Consensus 232 ~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 232 VYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EETTEEEEEECSSSCEEEEEETTSC
T ss_pred ECCCEEEEEECCCCcEEEEEECCCC
Confidence 77777765532 344555555443
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.68 E-value=0.099 Score=48.12 Aligned_cols=224 Identities=11% Similarity=0.129 Sum_probs=105.4
Q ss_pred EEEEEecCCeEEEEeCCCceeeE-EecCC-CcccEEEEEeCCCeEEEEeC----CC-------cEEEEEccCCCeeE-EE
Q 012679 197 HIAIGLNNCQVQLWDSTANRQLR-TLRGG-HRSRVGSLAWNNHILTTGGM----DG-------LIINNDVRVRDHIV-ET 262 (458)
Q Consensus 197 ~la~g~~dg~v~iwd~~~~~~~~-~~~~~-~~~~v~~l~~~~~~l~sg~~----dg-------~i~vwd~~~~~~~~-~~ 262 (458)
.++.|+. .+..||..+++-.. .+... .......+..++.+++.|+. ++ .+.+||..+..-.. ..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 48899998877443 12110 11222333346788888883 12 17788887654211 11
Q ss_pred EcccccceEeEEEcCCCCEEEEEECC-------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679 263 YRGHNQEVCGLKWSASGQQLASGGND-------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 263 ~~~h~~~v~~l~~spd~~~l~sg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
+.........+.+ ++++++.|+.+ ..+.+||..+..-.. +..+......- +++. .+..+++.|+
T Consensus 96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~----~~~~p~~r~~~-~~~~--~~~~iyv~GG 166 (318)
T 2woz_A 96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE----VKNLPIKVYGH-NVIS--HNGMIYCLGG 166 (318)
T ss_dssp BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE----ECCCSSCEESC-EEEE--ETTEEEEECC
T ss_pred CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE----CCCCCCccccc-EEEE--ECCEEEEEcC
Confidence 1111111122222 67777888754 357888887654311 11111100111 1222 2456766664
Q ss_pred CC----CCCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCCC----CcEEEEeCCCce--eeEEEeCCC
Q 012679 336 GG----GDRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFTQ----NQLTLWKYPSMV--KMAELSGHT 403 (458)
Q Consensus 336 g~----~d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~d----~~i~iwd~~~~~--~~~~~~~h~ 403 (458)
.. .-..+.+||..+.+-...-..... -.+++.. ++ .|++..|..+ +.+.+||..+.+ .+..+....
T Consensus 167 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 244 (318)
T 2woz_A 167 KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER 244 (318)
T ss_dssp EESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC
T ss_pred CCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 11 124589999988764433222211 1122222 33 4444444332 357788887643 232222111
Q ss_pred CcEEEEEEcCCCCEEEEEeCC--------------CcEEEEecCCC
Q 012679 404 SRVLFMAQSPDGCTVASAAAD--------------ETLRFWNVFGA 435 (458)
Q Consensus 404 ~~V~~l~~spdg~~l~s~s~D--------------g~i~iW~~~~~ 435 (458)
.....+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 11122222 56777777754 34667777553
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.64 E-value=0.05 Score=51.75 Aligned_cols=107 Identities=12% Similarity=0.175 Sum_probs=78.4
Q ss_pred EecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--
Q 012679 322 AWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-----SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-- 394 (458)
Q Consensus 322 ~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-- 394 (458)
..+.++..+++. .++.||.-++..+...+.+... ..+..+..+|+|.+|+.. .+..|.|..++.+.
T Consensus 27 ~~~~n~t~i~~a----~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~---g~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 27 FSSQNGTRIVFI----QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF---NDNEIFVMEVPWGYSN 99 (452)
T ss_dssp EEETTTTEEEEE----ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE---CSSEEEEEECCTTCSC
T ss_pred EEEcCCCEEEEE----ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe---cCCeEEEEEecCcccc
Confidence 334455666655 5789999898865556666554 268899999999999987 36789999988321
Q ss_pred ----------eeEEEeC------CCCcEEEEEEcC---CCCEEEEEeCCCcEEEEecCCC
Q 012679 395 ----------KMAELSG------HTSRVLFMAQSP---DGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 395 ----------~~~~~~~------h~~~V~~l~~sp---dg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
....+.- ...+|..+.|+| .+..|++-..|+.|++||+...
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 1112221 246799999999 4678999999999999999873
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.49 E-value=0.75 Score=45.32 Aligned_cols=288 Identities=12% Similarity=0.119 Sum_probs=166.7
Q ss_pred ceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecC-------------------------CCC
Q 012679 130 ERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDD-------------------------ENG 184 (458)
Q Consensus 130 ~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~-------------------------h~~ 184 (458)
.++--+|+-.++||. +.++|..|.|+|+-+.+++. +..+.- ..+
T Consensus 58 ~k~~v~pG~~Deyy~---------f~SgG~sG~v~v~G~PSmR~--l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~g 126 (638)
T 3sbq_A 58 QKIHVGPGELDDYYG---------FWSGGHQGEVRVLGVPSMRE--LMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNG 126 (638)
T ss_dssp CCCCCCTTCCCSEEE---------EEECGGGCCEEEEEETTTEE--EEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCC
T ss_pred cccccCCCCcccEEE---------EeecCcCceEEEEecCCcce--EEEeecccCCCCcccCCchhHHHHHhcCCCccCC
Confidence 455566777777764 56677778888888877654 222210 011
Q ss_pred CEE--EEEEcC---CCCEEEEEe-cCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeC-------CCc
Q 012679 185 PVT--SVNWAP---DGRHIAIGL-NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGM-------DGL 247 (458)
Q Consensus 185 ~V~--~v~~s~---~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~-------dg~ 247 (458)
... .+++.. ||+||.+-. .+..|...++...++-+.+.......+..+.+ +..+++++++ ||.
T Consensus 127 D~HHp~~S~tdg~yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~ 206 (638)
T 3sbq_A 127 DCHHPHISMTDGKYDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGK 206 (638)
T ss_dssp CCCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred CcCCCcccccCCeeeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCc
Confidence 122 333332 678888876 45678888998888777776657788888887 3467777764 232
Q ss_pred EE---------E---EEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC---------------cEEEEeCCC--
Q 012679 248 II---------N---NDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN---------------LLHIWDRSM-- 298 (458)
Q Consensus 248 i~---------v---wd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg---------------~i~iwd~~~-- 298 (458)
.. + .|..+.+...+... .+....+...+++++.++.+.+. .+.++++..
T Consensus 207 ~~~~~~~~~y~~f~~iD~~tm~v~~Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie 284 (638)
T 3sbq_A 207 VFDLQDENSYTMYNAIDAETMEMAFQVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVE 284 (638)
T ss_dssp CCCTTSTTEEEEEEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHH
T ss_pred ccccCChhhceEEEEEcCCccEEEEEEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHH
Confidence 11 0 11111111111111 12223344567777777655321 244444211
Q ss_pred -----CCCCCcc---ee-------------eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC------C
Q 012679 299 -----ASSNSVT---QW-------------LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG------A 351 (458)
Q Consensus 299 -----~~~~~~~---~~-------------~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~------~ 351 (458)
++..... .+ +..+-.-......+..+|+|.++++++- .+.++.++|+... +
T Consensus 285 ~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k 362 (638)
T 3sbq_A 285 AAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGK 362 (638)
T ss_dssp HHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTC
T ss_pred HHHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhcc
Confidence 1000000 00 1111111223457889999999999876 8999999998742 2
Q ss_pred -------eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----------eeeEEEeCCCCcEEEEEE---
Q 012679 352 -------CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----------VKMAELSGHTSRVLFMAQ--- 411 (458)
Q Consensus 352 -------~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----------~~~~~~~~h~~~V~~l~~--- 411 (458)
.+.....+-.....+|.++| ..+++ -+-|.+|.-|++... ..+..+.-|-.+ -.+..
T Consensus 363 ~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTt-lfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~g 439 (638)
T 3sbq_A 363 LADPRDVIVGEPELGLGPLHTTFDGRG-NAYTT-LFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLC 439 (638)
T ss_dssp CSCGGGGEEECCBCCSCEEEEEECSSS-EEEEE-ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTT
T ss_pred ccCcccceEeeccCCCcccEEEECCCC-ceEee-eeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCC
Confidence 24445566778899999999 33333 668999999998653 345556655543 23333
Q ss_pred ---cCCCCEEEEEeC---CCcE----------EEEecCCC
Q 012679 412 ---SPDGCTVASAAA---DETL----------RFWNVFGA 435 (458)
Q Consensus 412 ---spdg~~l~s~s~---Dg~i----------~iW~~~~~ 435 (458)
.|||++|++... |..+ .+.|+.+.
T Consensus 440 et~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 440 ETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp TSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred ccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 578999988753 5433 66777554
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.48 E-value=0.69 Score=45.58 Aligned_cols=231 Identities=10% Similarity=0.036 Sum_probs=135.9
Q ss_pred EEEEecCCeEEEEeCCCceeeEEecCCCc--------------------------ccEEEEEe-----CCCeEEEEe-CC
Q 012679 198 IAIGLNNCQVQLWDSTANRQLRTLRGGHR--------------------------SRVGSLAW-----NNHILTTGG-MD 245 (458)
Q Consensus 198 la~g~~dg~v~iwd~~~~~~~~~~~~~~~--------------------------~~v~~l~~-----~~~~l~sg~-~d 245 (458)
+.+|+..|.|+|+-+.+++.+..+..-.. .--..+++ +|++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 67888999999999999988877653000 00012333 356666665 35
Q ss_pred CcEEEEEccCCCeeEEEEcccccceEeEEEc--CCCCEEEEEEC-------CCcEEEEeCCCCCCCCcceeeeeeccc--
Q 012679 246 GLIINNDVRVRDHIVETYRGHNQEVCGLKWS--ASGQQLASGGN-------DNLLHIWDRSMASSNSVTQWLHRLEEH-- 314 (458)
Q Consensus 246 g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s--pd~~~l~sg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~h-- 314 (458)
..|...+++..++-.-.-......+.++.|- |+..|++.+++ ||.. .++..... . .....+...
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~--y-~~f~~iD~~tm 227 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENS--Y-TMYNAIDAETM 227 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTE--E-EEEEEEETTTC
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhh--c-eEEEEEcCCcc
Confidence 6677777776554221222456678888886 78888888875 3321 10011100 0 000111111
Q ss_pred --------ccceeEEEecCCCCcEEEEeCCCC------------------------------------CC-eEEEEECCC
Q 012679 315 --------TSAVKAIAWCPFQSNLLATGGGGG------------------------------------DR-CIKFWNTHT 349 (458)
Q Consensus 315 --------~~~v~~l~~~p~~~~ll~s~~g~~------------------------------------d~-~i~lwd~~~ 349 (458)
.+..-.+...+++.+.+.++-.+. ++ .+.+.|.+.
T Consensus 228 ~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~ 307 (638)
T 3sbq_A 228 EMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRK 307 (638)
T ss_dssp SEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSC
T ss_pred EEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccc
Confidence 112223444566666666663111 11 245555554
Q ss_pred ----C-CeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee-------------eEEEeCCCCcEEEEEE
Q 012679 350 ----G-ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK-------------MAELSGHTSRVLFMAQ 411 (458)
Q Consensus 350 ----~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~-------------~~~~~~h~~~V~~l~~ 411 (458)
+ ..+..+........+..+|+|++++++ |-.+.++.++|+..... +.+.+ -....+..+|
T Consensus 308 ~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~-GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~F 385 (638)
T 3sbq_A 308 KDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAA-GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTF 385 (638)
T ss_dssp BTTBCCSSEEEEEESSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEE
T ss_pred ccccCCceEEEEeCCCCCcceeeCCCCCEEEEc-CCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEE
Confidence 2 233444455566778899999999987 66789999999875321 22333 2345688999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCC
Q 012679 412 SPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 412 spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.++|....|--.|..|.-|++...
T Consensus 386 d~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 386 DGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCCceEeeeeecceEEEEeccHH
Confidence 999965556668999999999653
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.46 E-value=0.27 Score=50.82 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=104.8
Q ss_pred CCCCEEEEEecC----CeEEEEeCCCceeeEEe-c------CCCcccEEEEEe--CCCeEEEEeCCC------cEEEEEc
Q 012679 193 PDGRHIAIGLNN----CQVQLWDSTANRQLRTL-R------GGHRSRVGSLAW--NNHILTTGGMDG------LIINNDV 253 (458)
Q Consensus 193 ~~g~~la~g~~d----g~v~iwd~~~~~~~~~~-~------~~~~~~v~~l~~--~~~~l~sg~~dg------~i~vwd~ 253 (458)
-++..++.|+.+ ..+.+||..+++-...- . ............ ++.+++.|+.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 36889998876543322 1 112223445666 778888887543 5788898
Q ss_pred cCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679 254 RVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330 (458)
Q Consensus 254 ~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 330 (458)
.+..... ..+.. ...-.+++...++++++.||.++ .+.+||..+..-..... ............++.+......+
T Consensus 476 ~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~-~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP-KDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC-SSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC-CCCCCCcccceeEEEEeCCCCEE
Confidence 7654211 11111 11112233324888888888655 68999987754311000 00011111122335555544667
Q ss_pred EEEeCCCCC-----CeEEEEECCCCC------eeEEEeC--CCC-eEEEEEcCCCCeEEEEecCC-------CCcEEEEe
Q 012679 331 LATGGGGGD-----RCIKFWNTHTGA------CLNSVDT--GSQ-VCALLWNKNERELLSSHGFT-------QNQLTLWK 389 (458)
Q Consensus 331 l~s~~g~~d-----~~i~lwd~~~~~------~~~~~~~--~~~-v~~~~~s~~~~~l~~~~g~~-------d~~i~iwd 389 (458)
++.||...+ ..+.+||+.+.. ....... ... -.+++...+++ |++.+|.. .+.+.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE-EEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE-EEEECCccCCCCCCCCCeEEEEE
Confidence 777753223 468999998877 2222111 111 11222222244 44443532 45699999
Q ss_pred CCCceee
Q 012679 390 YPSMVKM 396 (458)
Q Consensus 390 ~~~~~~~ 396 (458)
..+.+-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9876543
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.25 Score=45.93 Aligned_cols=106 Identities=5% Similarity=-0.105 Sum_probs=66.8
Q ss_pred CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEE--eCCCcEEEEEccCCCeeEEEEcc---c
Q 012679 196 RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTG--GMDGLIINNDVRVRDHIVETYRG---H 266 (458)
Q Consensus 196 ~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~---h 266 (458)
..+++++.||.|.-+|..+|+.+.++......++....- .+..++.+ +.||.|..++..++......-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 478899999999999999999999987531123332221 12234444 68999999998766432111110 1
Q ss_pred ccceEe---EEE-----cCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 267 NQEVCG---LKW-----SASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 267 ~~~v~~---l~~-----spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
..++.. ... ...+..+++|+.+|.+.-.|+.+++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 111111 000 01456788999999999999999876
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.21 E-value=0.29 Score=45.67 Aligned_cols=152 Identities=13% Similarity=0.028 Sum_probs=86.7
Q ss_pred EcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee----cccccceeEEEecCC---CCcEEEEeC
Q 012679 263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL----EEHTSAVKAIAWCPF---QSNLLATGG 335 (458)
Q Consensus 263 ~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~p~---~~~ll~s~~ 335 (458)
+...-.....|+|.|||.++++--..|.|++++...+.. ..+..+ .........|+++|+ +..++++-+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE----eeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 333345677999999999777765589999998654432 112111 223456789999995 455555422
Q ss_pred CCCCCeEEEEECCCC----------Cee-EEEeC--CCCeEEEEEcCCCCeEEEEecC------------CCCcEEEEeC
Q 012679 336 GGGDRCIKFWNTHTG----------ACL-NSVDT--GSQVCALLWNKNERELLSSHGF------------TQNQLTLWKY 390 (458)
Q Consensus 336 g~~d~~i~lwd~~~~----------~~~-~~~~~--~~~v~~~~~s~~~~~l~~~~g~------------~d~~i~iwd~ 390 (458)
...++.|.-|....+ +.+ ..+.. .+....+.|.|+|...++. |. ..|.|.-++.
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~-Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT-GESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC-BCTTCGGGTTCTTCSTTCEEEECT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE-CCCCCCccccCCCCCCCEEEEEeC
Confidence 123455666655441 111 12221 2345679999999755553 42 1245555554
Q ss_pred CCc---------eeeEEEeCCCCcEEEEEEcCCCCEEEEE
Q 012679 391 PSM---------VKMAELSGHTSRVLFMAQSPDGCTVASA 421 (458)
Q Consensus 391 ~~~---------~~~~~~~~h~~~V~~l~~spdg~~l~s~ 421 (458)
... ..+. -.+|.. ...++|+|+|.+.++-
T Consensus 182 dG~ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 182 DGEPAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp TSSBCTTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEEE
T ss_pred CCCccCCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEEe
Confidence 321 1121 235554 4589999998766654
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.06 E-value=1.2 Score=43.33 Aligned_cols=104 Identities=9% Similarity=0.117 Sum_probs=60.7
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee--eEEecCC-----CcccEEEEEeC-----CCeEEEEeC-------
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ--LRTLRGG-----HRSRVGSLAWN-----NHILTTGGM------- 244 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~--~~~~~~~-----~~~~v~~l~~~-----~~~l~sg~~------- 244 (458)
.....|+|.|+|+++++-...+.|.+++..+++. +..+... .......|+|+ +..|.....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 4578999999998666544335798888655543 2223210 23556789996 445554432
Q ss_pred ------CCcEEEEEccCCC-------eeEEEEcc-cccceEeEEEcCCCCEEEEEEC
Q 012679 245 ------DGLIINNDVRVRD-------HIVETYRG-HNQEVCGLKWSASGQQLASGGN 287 (458)
Q Consensus 245 ------dg~i~vwd~~~~~-------~~~~~~~~-h~~~v~~l~~spd~~~l~sg~~ 287 (458)
...|.-+++.... .++..+.. .......|.|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666554321 11222221 1234688999999998777553
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.94 E-value=0.23 Score=46.53 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=79.9
Q ss_pred cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC---CCcEEEEeCC-CC----C
Q 012679 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF---QSNLLATGGG-GG----D 339 (458)
Q Consensus 268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~ll~s~~g-~~----d 339 (458)
.....|+|.|+|+.|+++...|.|++++.........................|+++|+ +..++++... .. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45678999999993445567799999985322110000000011122345678999996 5666665421 01 2
Q ss_pred CeEEEEECCCC--C--eeEEE----e----CCCCeEEEEEcCCCCeEEEEecCC------------CCcEEEEeCCCce-
Q 012679 340 RCIKFWNTHTG--A--CLNSV----D----TGSQVCALLWNKNERELLSSHGFT------------QNQLTLWKYPSMV- 394 (458)
Q Consensus 340 ~~i~lwd~~~~--~--~~~~~----~----~~~~v~~~~~s~~~~~l~~~~g~~------------d~~i~iwd~~~~~- 394 (458)
..|..|+...+ . ....+ . .......+.|.|+|. |+++.|.. .+.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35666666533 1 11111 1 112356799999995 54444432 2456666654220
Q ss_pred -----------eeEE-EeCCCCcEEEEEEcC-CCCEEEE
Q 012679 395 -----------KMAE-LSGHTSRVLFMAQSP-DGCTVAS 420 (458)
Q Consensus 395 -----------~~~~-~~~h~~~V~~l~~sp-dg~~l~s 420 (458)
.... -.+|. ....++|+| +|.+.++
T Consensus 177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence 1111 12443 367899999 6655554
No 343
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.64 E-value=1.4 Score=41.09 Aligned_cols=227 Identities=13% Similarity=0.101 Sum_probs=119.1
Q ss_pred cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEec---CCCCCEEEEEEcCC---CCEEEEEec----C----CeEE
Q 012679 144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVD---DENGPVTSVNWAPD---GRHIAIGLN----N----CQVQ 208 (458)
Q Consensus 144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~---~h~~~V~~v~~s~~---g~~la~g~~----d----g~v~ 208 (458)
...+.|.+ ++++++..++.|++++ .+++ ..+..+. ........|+++|+ +..|.++.. + +.|.
T Consensus 31 P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CeEEEEcCCCeEEEEeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 34566765 5677778889999997 4554 3344332 22356899999997 556655543 2 5677
Q ss_pred EEeCCCc-------eee-EEecCCCcccEEEEEe--CCCeEEEEeC-------------CCcEEEEEccCCC-------e
Q 012679 209 LWDSTAN-------RQL-RTLRGGHRSRVGSLAW--NNHILTTGGM-------------DGLIINNDVRVRD-------H 258 (458)
Q Consensus 209 iwd~~~~-------~~~-~~~~~~~~~~v~~l~~--~~~~l~sg~~-------------dg~i~vwd~~~~~-------~ 258 (458)
.|+.... +.+ ..+..........|.| ++.++++.+. .|.|.-++....- .
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~ 188 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN 188 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence 7776543 111 1222111112345777 5665555332 2456555554320 0
Q ss_pred eEEEEcccccceEeEEEcC-CCCEEEEEECCC---cEEEEeCCCCCC------------CCcceeeeeecccccceeEEE
Q 012679 259 IVETYRGHNQEVCGLKWSA-SGQQLASGGNDN---LLHIWDRSMASS------------NSVTQWLHRLEEHTSAVKAIA 322 (458)
Q Consensus 259 ~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg---~i~iwd~~~~~~------------~~~~~~~~~~~~h~~~v~~l~ 322 (458)
......++. ....++|+| +++++++-...+ .|.+.. .+.. .....++..+.........++
T Consensus 189 ~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 189 SPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp CCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 011122333 346799999 566555433222 243332 1110 000112333311234567788
Q ss_pred ecC------CCCcEEEEeCCCCCCeEEEEECCCC-Cee--EEEeC--CCCeEEEEEcCCCCeEEEE
Q 012679 323 WCP------FQSNLLATGGGGGDRCIKFWNTHTG-ACL--NSVDT--GSQVCALLWNKNERELLSS 377 (458)
Q Consensus 323 ~~p------~~~~ll~s~~g~~d~~i~lwd~~~~-~~~--~~~~~--~~~v~~~~~s~~~~~l~~~ 377 (458)
|.. ....++++.- ..+.|...++... +.. ..+-. ...+..+++.|+|..+++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACL--RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEET--TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCCcEEEEEc--CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 732 2346666554 5678888888753 332 22322 3568899999998666653
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.47 E-value=1.3 Score=43.00 Aligned_cols=107 Identities=11% Similarity=0.131 Sum_probs=62.0
Q ss_pred ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc------cccceeEEEecCC---CCcEEEEeCC-
Q 012679 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE------HTSAVKAIAWCPF---QSNLLATGGG- 336 (458)
Q Consensus 267 ~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~---~~~ll~s~~g- 336 (458)
-....+|+|.|+|+++++-...+.|++++...+.. ..+..+.. .......|+|+|+ +..++++.+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 34567999999999777654445788887654332 11222211 2355679999996 5666665431
Q ss_pred ---CC------CCeEEEEECCCC--C-----eeE-EEeC--CCCeEEEEEcCCCCeEEEE
Q 012679 337 ---GG------DRCIKFWNTHTG--A-----CLN-SVDT--GSQVCALLWNKNERELLSS 377 (458)
Q Consensus 337 ---~~------d~~i~lwd~~~~--~-----~~~-~~~~--~~~v~~~~~s~~~~~l~~~ 377 (458)
.. ...|.-++...+ . .+. .+.. .+....++|.|+|...++.
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence 00 234555554332 1 111 1221 2457899999999766654
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.26 E-value=0.6 Score=51.30 Aligned_cols=155 Identities=12% Similarity=0.210 Sum_probs=98.0
Q ss_pred cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCC----CCCEEEEEEcCCCCEEEEEe-------cCCeEEEEeC
Q 012679 144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDE----NGPVTSVNWAPDGRHIAIGL-------NNCQVQLWDS 212 (458)
Q Consensus 144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h----~~~V~~v~~s~~g~~la~g~-------~dg~v~iwd~ 212 (458)
+.-+.|-..+.++.-.+..|+-|++.... .+..-+..| ...|..-.-+++.++++..+ -.|.+++|.+
T Consensus 108 VvfWkWis~~~l~lVT~~aVyHW~~~~~s-~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~ 186 (1630)
T 1xi4_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (1630)
T ss_pred ceEEEecCCCeeEEEcCCeEEEeccCCCC-ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence 55688988888999999999999996422 222222322 45677778888999887643 3578999987
Q ss_pred CCceeeEEecCCCcccEEEEEeCC-----CeEEEEeC---CCcEEEEEccCC---Cee-----EEEEc---ccccceEeE
Q 012679 213 TANRQLRTLRGGHRSRVGSLAWNN-----HILTTGGM---DGLIINNDVRVR---DHI-----VETYR---GHNQEVCGL 273 (458)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~l~~~~-----~~l~sg~~---dg~i~vwd~~~~---~~~-----~~~~~---~h~~~v~~l 273 (458)
+.+. -+.+.+ |.+....+..+| .+++.+.+ .+.++|-++... ... +..+. ....-..++
T Consensus 187 er~~-sQ~ieg-ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~ 264 (1630)
T 1xi4_A 187 DRKV-SQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (1630)
T ss_pred cccc-chhhhH-hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence 6543 223333 655555544432 22332222 268888888543 100 01110 112233457
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 274 KWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 274 ~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
..++.-..+..-+.-|.|+++|+.++..
T Consensus 265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 265 QISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred EeccccCEEEEEecCceEEEEecccchh
Confidence 7777777888888999999999999876
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.04 E-value=2 Score=39.12 Aligned_cols=236 Identities=10% Similarity=0.002 Sum_probs=130.1
Q ss_pred CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC--------------CeEEEEeCCCceeeEEecCCC
Q 012679 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN--------------CQVQLWDSTANRQLRTLRGGH 225 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d--------------g~v~iwd~~~~~~~~~~~~~~ 225 (458)
++.|+..+.+.....++..- .+--++++|.+|+..... ..|+..++..++... +..
T Consensus 36 ~~~ly~~~~dg~~~~~l~~~-------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~-- 105 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSND-------TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP-- 105 (302)
T ss_dssp TTEEEEEETTSCSCEEEEEE-------EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--
T ss_pred CceEEEEcCCCCCCEEccCC-------ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--
Confidence 57788888766665444321 234457899998887653 357777777665333 221
Q ss_pred cccEEEEEeCCCeEEEEe--CCC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCC
Q 012679 226 RSRVGSLAWNNHILTTGG--MDG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMAS 300 (458)
Q Consensus 226 ~~~v~~l~~~~~~l~sg~--~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~ 300 (458)
.....++..++.|+-.. .++ .|..-++.... ...+..+.. ..++++++.|.-.+. ...|.+-++....
T Consensus 106 -~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 106 -DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp -SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred -CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 22335666777777665 344 45555554333 334443332 345778888876655 5778888876554
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~ 380 (458)
. ..+.. +.. ...+.|++..++.+..+ ....|..-++..+... .+ ....+ ..|+|++..|+.+...
T Consensus 179 ~-------~~l~~--~~~-~~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~~-~L-t~~~~--~~~~~~g~~Iy~~~~~ 243 (302)
T 3s25_A 179 E-------ALFYD--CNC-YKPVVLDDTNVYYMDVN-RDNAIVHVNINNPNPV-VL-TEANI--EHYNVYGSLIFYQRGG 243 (302)
T ss_dssp E-------EEEEC--SCE-EEEEEEETTEEEEEEGG-GTTEEEEECSSSCCCE-EC-SCSCE--EEEEEETTEEEEEECS
T ss_pred E-------EEEeC--CCc-cceeeecCCEEEEEEcC-CCcEEEEEECCCCCeE-EE-eCCCc--ceEEECCCEEEEEECC
Confidence 2 12211 112 23456888888887641 2246777777655432 22 22333 3478889888875333
Q ss_pred CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q 012679 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNV 432 (458)
Q Consensus 381 ~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~ 432 (458)
..+.|..-++..........+ .+..+ ++.+.+|.-.. ..+.|..-++
T Consensus 244 ~~~~i~~~~~DG~~r~~l~~~---~~~~i--~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 244 DNPALCVVKNDGTGFKELAKG---EFCNI--NVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp SSCEEEEEETTSCCCEEEEES---CEEEE--EECSSEEEEEETTTCCEEEEES
T ss_pred CCcEEEEEECCCCccEEeeCC---ccceE--EEeCCEEEEEECCCCeEEEEEC
Confidence 346777777765433222222 23333 44556665554 3344443343
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.50 E-value=0.66 Score=39.99 Aligned_cols=134 Identities=9% Similarity=0.039 Sum_probs=75.0
Q ss_pred CeEEEEcCCEEEEEECCCCCee----eEEEecC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee------eEEe
Q 012679 153 NVLAIALGSTVYLWDASDGTTS----ELVTVDD-ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ------LRTL 221 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~----~~~~~~~-h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~------~~~~ 221 (458)
.|+++..| +|+.=...++... ...++.. .=..+.+++|+|+|.+.++ .+|.+.-.+..+... -..+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 35555555 6666655555410 1222221 1236789999999987666 788777766544221 1111
Q ss_pred cCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCee------EEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 222 RGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHI------VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 222 ~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~------~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
-..--....++.|++ .+.++ .||.|+-++..+...- ...-..--..+..|.+.|+|.+.++. |+.++-
T Consensus 83 G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 83 GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 110111146677764 44444 6699987776432210 11111223578999999999988877 777543
No 348
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.40 E-value=2.2 Score=36.73 Aligned_cols=153 Identities=11% Similarity=0.044 Sum_probs=86.9
Q ss_pred cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN 346 (458)
Q Consensus 268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd 346 (458)
..+..++|+|+|.+.++ .+|.++-.+..+.....-...-..+-. --....++.|.|++ .|.++ .||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav----~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV----SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE----ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-CEEEe----CCCEEEEeC
Confidence 46779999999997777 667776666544322110000011100 01114789999964 45444 368998887
Q ss_pred CCCCCee------EEEeC--CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce------eeEEEe-CCCCcEEEEEE
Q 012679 347 THTGACL------NSVDT--GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV------KMAELS-GHTSRVLFMAQ 411 (458)
Q Consensus 347 ~~~~~~~------~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~------~~~~~~-~h~~~V~~l~~ 411 (458)
-.+...- ..+.. -..+..+.+.|+|...++. ++.++-...++.. ....+- +.-..-..+.|
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~----dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH----GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE----TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe----CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 6442211 11111 1357899999999988873 5555544444221 111121 23334566789
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCC
Q 012679 412 SPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 412 spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.++|.+.+.. +| +||....+
T Consensus 190 ~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 190 SSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp CTTSCEEEEE--TT--EEEEESCC
T ss_pred CCCCcEEEEe--CC--eEEecCCc
Confidence 9999877755 66 66766444
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.27 E-value=6.1 Score=35.40 Aligned_cols=238 Identities=17% Similarity=0.159 Sum_probs=124.3
Q ss_pred cceeeccCCCeEEEEcCCEEEEEECCC-CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 144 LNLLDWGSSNVLAIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 144 ~~~~~~~~~~~la~~~d~~v~iwd~~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
+..++-.....++.. +|.|+.|-... +++- + .. .....|..|+...+. .++. . ||.|..|-......+..-.
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg-~-p~-~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLT-M-PA-ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTS-C-CG-GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCC-C-Cc-cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 344555556667776 99999997654 2221 0 00 112357777765432 3333 4 9999999765433222111
Q ss_pred CCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC
Q 012679 223 GGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN 302 (458)
Q Consensus 223 ~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~ 302 (458)
. -...|..++......+.-. +|.|+.|-......+- ........|..++.-.+. .+.-. ||.|+.|-.......
T Consensus 99 ~-~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 E-ARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp G-GSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTT
T ss_pred c-cCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCC
Confidence 1 2346888888665555566 9999999765433211 111123456666654332 22233 799999976654331
Q ss_pred CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE-EEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN-SVDTGSQVCALLWNKNERELLSSHGFT 381 (458)
Q Consensus 303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~g~~ 381 (458)
... ..-...|..++-.. ...++. .||.|..|=......+- .......|..++..... .++. .
T Consensus 173 g~p------~~~~~~v~~i~~G~--~hs~al----~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al--~-- 235 (282)
T 3qhy_B 173 TVP------AEAQSGVDDVAGGI--FHSLAL----KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL--K-- 235 (282)
T ss_dssp SCC------GGGGSSEEEEEECS--SEEEEE----ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE--E--
T ss_pred CCc------eecCCCeEEEEecC--CEEEEE----ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE--E--
Confidence 110 01134566666544 233333 37889999655422111 11112345555543332 2222 2
Q ss_pred CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC
Q 012679 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415 (458)
Q Consensus 382 d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg 415 (458)
+|.|..|-.....++.. ...|..++.....
T Consensus 236 ~g~v~~wG~n~~gq~~v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 236 NGKVIAWGSSRTAPSSV----QSGVSSIEAGPNA 265 (282)
T ss_dssp TTEEEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred CCEEEEecCCCCccccC----CCCcEEEEECcCe
Confidence 67888887665433321 2356666665543
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.13 E-value=6.3 Score=35.29 Aligned_cols=224 Identities=15% Similarity=0.060 Sum_probs=115.4
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEc
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYR 264 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 264 (458)
.|..|+.... ..++. . ||.|..|-......+..-.. ....|..++......+.-. ||.|+.|-......+-. -.
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~-~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~-P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAA-TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV-PA 98 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGG-GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-CG
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCcc-CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC-Cc
Confidence 5677765433 22333 5 89999997654332221111 3346777887544333335 99999997654332111 01
Q ss_pred ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF 344 (458)
Q Consensus 265 ~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l 344 (458)
.-...|..++...+ +.+.-. ||.|+.|-........ ........|..++... ...++. .|+.|..
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg------~~~~~~~~i~~i~~G~--~~~~~l----~~G~v~~ 163 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT------VPAEAQSGVTALDGGV--YTALAV----KNGGVIA 163 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS------CCGGGGSSEEEEEECS--SEEEEE----ETTEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC------CCccCCCCeEEEEccc--CEEEEE----ECCEEEE
Confidence 11235766666433 333344 8999999865533211 0111234566666544 223332 3688888
Q ss_pred EECCCCCeeE-EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679 345 WNTHTGACLN-SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA 423 (458)
Q Consensus 345 wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 423 (458)
|-......+. .......|..++.......++ .+|.|..|-.....++..-......|..++...+...+++
T Consensus 164 wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-----~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--- 235 (282)
T 3qhy_B 164 WGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-----KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--- 235 (282)
T ss_dssp EECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-----ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---
T ss_pred ecCCCCCCCCCceecCCCeEEEEecCCEEEEE-----ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---
Confidence 8765422111 111123455555433322222 3778888876543222111111245777777655433333
Q ss_pred CCcEEEEecCCCCc
Q 012679 424 DETLRFWNVFGAPQ 437 (458)
Q Consensus 424 Dg~i~iW~~~~~~~ 437 (458)
||.|..|=-....+
T Consensus 236 ~g~v~~wG~n~~gq 249 (282)
T 3qhy_B 236 NGKVIAWGSSRTAP 249 (282)
T ss_dssp TTEEEEESTTCCCC
T ss_pred CCEEEEecCCCCcc
Confidence 99999997665433
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.60 E-value=16 Score=35.42 Aligned_cols=248 Identities=9% Similarity=0.045 Sum_probs=120.7
Q ss_pred CCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCc---eeeEEecC--------CCcccEEEEEeCCC-----eEE-EEeC-
Q 012679 184 GPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTAN---RQLRTLRG--------GHRSRVGSLAWNNH-----ILT-TGGM- 244 (458)
Q Consensus 184 ~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~---~~~~~~~~--------~~~~~v~~l~~~~~-----~l~-sg~~- 244 (458)
.....|+|.|||. .|+++...|.|++++.... ..+..+.. ........|++++. .|. +-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3468999999996 5666778999999975432 12222221 01356788999753 333 3221
Q ss_pred -C----------CcEEEEEccCC---------CeeEEEEc--ccccceEeEEEcCCCCEEEEEECCC-------------
Q 012679 245 -D----------GLIINNDVRVR---------DHIVETYR--GHNQEVCGLKWSASGQQLASGGNDN------------- 289 (458)
Q Consensus 245 -d----------g~i~vwd~~~~---------~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~dg------------- 289 (458)
+ ..|.-|.+... ...+..+. ........|.|.|||.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 13444555321 11222221 2223457899999998877766533
Q ss_pred ----cEEEEeCCCC------CCCC--c--c----eeeeeecccccceeEEEecCCCC----c-EEEEeC-CCCC-CeEEE
Q 012679 290 ----LLHIWDRSMA------SSNS--V--T----QWLHRLEEHTSAVKAIAWCPFQS----N-LLATGG-GGGD-RCIKF 344 (458)
Q Consensus 290 ----~i~iwd~~~~------~~~~--~--~----~~~~~~~~h~~~v~~l~~~p~~~----~-ll~s~~-g~~d-~~i~l 344 (458)
.|.-.|.... ..+. . . .+..--.+|.. ...++|.|... . .+..+. +..+ ..-.|
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 2333343321 0000 0 0 00001113333 35789999632 2 233221 0011 11233
Q ss_pred EECCCC------CeeEEEeCC--CCeEEEEEcCC-------CCeEEEEecCCCCcEEEEeCCCce---eeEEE-e-----
Q 012679 345 WNTHTG------ACLNSVDTG--SQVCALLWNKN-------ERELLSSHGFTQNQLTLWKYPSMV---KMAEL-S----- 400 (458)
Q Consensus 345 wd~~~~------~~~~~~~~~--~~v~~~~~s~~-------~~~l~~~~g~~d~~i~iwd~~~~~---~~~~~-~----- 400 (458)
..+..+ .++..+... ..+..+.|... +.+++... . +.|....+.... ....+ .
T Consensus 253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~--~-g~i~~~~~~~~~~~~~~~~~~~g~~~~ 329 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDR--N-GNFLTLQQSPVTKQWQEKPLCLGTSGS 329 (463)
T ss_dssp EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEET--T-SCEEEEEC-----CCEEEEECEEETTS
T ss_pred eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecC--C-CcEEEEEeCCCCceeeEEEeecCCccc
Confidence 333322 244444433 45777777543 33455432 2 556555554321 11112 1
Q ss_pred ---CCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCC
Q 012679 401 ---GHTSRVLFMAQSPDGCTVASAAAD-----ETLRFWNVFGA 435 (458)
Q Consensus 401 ---~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iW~~~~~ 435 (458)
....++..+++.|||.++++.... ..=+||.|...
T Consensus 330 ~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~p 372 (463)
T 2wg3_C 330 CRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDP 372 (463)
T ss_dssp SCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEECT
T ss_pred ccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecCc
Confidence 123679999999999988876521 23467888643
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.50 E-value=19 Score=33.73 Aligned_cols=213 Identities=9% Similarity=0.000 Sum_probs=101.4
Q ss_pred CCeEEEEcCCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCC----eEEEEeCCCceeeEEecCC
Q 012679 152 SNVLAIALGSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNC----QVQLWDSTANRQLRTLRGG 224 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg----~v~iwd~~~~~~~~~~~~~ 224 (458)
..++++...| +.+++... ......... .....|.+|++.| +...|.+++..| .|...+ ..++.-..+...
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 4566776655 66666443 344333211 2245699999998 334455565555 444432 233322222210
Q ss_pred -------------CcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEEcc-------------------ccc
Q 012679 225 -------------HRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRG-------------------HNQ 268 (458)
Q Consensus 225 -------------~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-------------------h~~ 268 (458)
....|.+++++ +..|.+++..+.|...+-. +.. ...+.. ...
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~t-W~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GAS-WEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSB-CEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCC-eEECcCccCCccccccccccccCCCCCC
Confidence 11257788885 5677777766666554322 111 122211 123
Q ss_pred ceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeee-ecc-c--------ccceeEEEecCCCCcEEEEeCCC
Q 012679 269 EVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHR-LEE-H--------TSAVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 269 ~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-h--------~~~v~~l~~~p~~~~ll~s~~g~ 337 (458)
.+.+|.+.|. ...|..+..++.|...+-....- +.+.. ... + ...+.+|+++|.....+..+.
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW----~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-- 251 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDW----KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-- 251 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESSTTSSC----EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECCCCCCc----eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--
Confidence 5788999883 44455555444444433211111 00000 000 0 134788999986544444443
Q ss_pred CCCeEEEEECCCCCeeEEEe--CC----CCeEEEEEcCC-CCeEEEE
Q 012679 338 GDRCIKFWNTHTGACLNSVD--TG----SQVCALLWNKN-ERELLSS 377 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~~~~~--~~----~~v~~~~~s~~-~~~l~~~ 377 (458)
. +.|...+- .++.-..+. .. ..+..+.++|. ...++++
T Consensus 252 ~-~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 252 H-CGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp T-TEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred C-CeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 3 33444432 233222222 11 23567778763 3444443
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=86.37 E-value=32 Score=35.30 Aligned_cols=232 Identities=9% Similarity=0.022 Sum_probs=116.6
Q ss_pred EcCCCCEEEEEecCC-----eEEEEeCCCceeeEE-ecCCCcc------cEEEEEe-CCCeEEEEe-----------CCC
Q 012679 191 WAPDGRHIAIGLNNC-----QVQLWDSTANRQLRT-LRGGHRS------RVGSLAW-NNHILTTGG-----------MDG 246 (458)
Q Consensus 191 ~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~~-~~~~~~~------~v~~l~~-~~~~l~sg~-----------~dg 246 (458)
++|++++++.+-+.| .++++|+.+++.+.. +...-.. ....++| +++.++.+. ...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 788998888764433 699999999987742 1100000 1234577 444444432 124
Q ss_pred cEEEEEccCCCe-eEEEEcccccc-eEeEEEcCCCC-----EEEEEECC---CcEEEEeCCCCCCCCcceeeeeeccccc
Q 012679 247 LIINNDVRVRDH-IVETYRGHNQE-VCGLKWSASGQ-----QLASGGND---NLLHIWDRSMASSNSVTQWLHRLEEHTS 316 (458)
Q Consensus 247 ~i~vwd~~~~~~-~~~~~~~h~~~-v~~l~~spd~~-----~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~ 316 (458)
.|+.|.+-+... -...+.+.... -.+...+++++ .+++.+.+ ..+.+.|....... ...+.....
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~ 291 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-----LQKINMPSD 291 (711)
T ss_dssp EEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-----EEECCSCTT
T ss_pred EEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-----ceEeecCCc
Confidence 688887765531 12233332222 23455566766 24444422 45666665432221 122221111
Q ss_pred ceeEEEecCCCCcEEEEeCC--------CCCCeEEEEECCCCC-------eeEE-EeC--CCCeEEEEEcCCCCeEEEEe
Q 012679 317 AVKAIAWCPFQSNLLATGGG--------GGDRCIKFWNTHTGA-------CLNS-VDT--GSQVCALLWNKNERELLSSH 378 (458)
Q Consensus 317 ~v~~l~~~p~~~~ll~s~~g--------~~d~~i~lwd~~~~~-------~~~~-~~~--~~~v~~~~~s~~~~~l~~~~ 378 (458)
. .+..... ..+++.... ...+.|...|+.++. .... +.. ...+..+.|..+ ..+++..
T Consensus 292 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 292 A--TLQGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp C--EEEEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred c--eEeeeEC-CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 1 1223333 344442210 135678888887642 1222 322 334778888876 3444432
Q ss_pred cCCCC--cEEEEeCCCce-eeEE-EeCC-CCcEEEEEEcCCCC-EEEEEeCC---CcEEEEecC
Q 012679 379 GFTQN--QLTLWKYPSMV-KMAE-LSGH-TSRVLFMAQSPDGC-TVASAAAD---ETLRFWNVF 433 (458)
Q Consensus 379 g~~d~--~i~iwd~~~~~-~~~~-~~~h-~~~V~~l~~spdg~-~l~s~s~D---g~i~iW~~~ 433 (458)
.++ .|.++++.++. .... +.-. .+.+.....++++. ++++.+.. +.+..+|+.
T Consensus 368 --~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 368 --DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp --ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred --ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 344 57778876664 2333 2211 24566666777665 44444432 567777765
No 354
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=85.59 E-value=24 Score=33.08 Aligned_cols=237 Identities=11% Similarity=0.108 Sum_probs=127.3
Q ss_pred eeeccCCCeEEEEcCCEEEEEECCC-CC--------eeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679 146 LLDWGSSNVLAIALGSTVYLWDASD-GT--------TSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 146 ~~~~~~~~~la~~~d~~v~iwd~~~-~~--------~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~ 215 (458)
.++-.....++...+|.|+.|-... ++ ......+. .....+..++.+....+.+.-+.||.|..|-....
T Consensus 57 ~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~ 136 (389)
T 3kci_A 57 QLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAED 136 (389)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGG
T ss_pred EEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCC
Confidence 3444556788889999999996442 11 11111122 12334666777777777777889999999954321
Q ss_pred -----------eeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCC---------ee-EEEEcc-cccceEeE
Q 012679 216 -----------RQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD---------HI-VETYRG-HNQEVCGL 273 (458)
Q Consensus 216 -----------~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~---------~~-~~~~~~-h~~~v~~l 273 (458)
.....+.......|..++......++-..+|.|+.|-..... .. ...+.. ....|..+
T Consensus 137 GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~i 216 (389)
T 3kci_A 137 GKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDI 216 (389)
T ss_dssp GTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred CcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEE
Confidence 111222221234688888877777788889999999653211 00 111111 12346666
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCCCC------Ccceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679 274 KWSASGQQLASGGNDNLLHIWDRSMASSN------SVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN 346 (458)
Q Consensus 274 ~~spd~~~l~sg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd 346 (458)
+......+.+.-..||.|+.|-....... ....+ ..+.. ....|..++... ...++.. .||.|..|=
T Consensus 217 a~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p-~~v~~~~~~~v~~v~~G~--~hs~alt---~~G~v~~wG 290 (389)
T 3kci_A 217 ACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVP-MKIDSLTGLGVVKVECGS--QFSVALT---KSGAVYTWG 290 (389)
T ss_dssp EECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEE-EECGGGTTSCEEEEEEET--TEEEEEE---TTSCEEEEE
T ss_pred EEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCcccc-EEecccCCCcEEEEeCCC--CEEEEEe---CCCeEEEEe
Confidence 65443456667778999999975432110 00111 11111 122466666543 2333332 789999996
Q ss_pred CCCCC--------ee---EEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 347 THTGA--------CL---NSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 347 ~~~~~--------~~---~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
..... .. ..+. ....|..++.......+++ .+|.|+.|=...
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~----~~G~v~~wG~n~ 345 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCT----EDGEVYTWGDND 345 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEE----TTCCEEEEECCT
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEEC----CCCCEEEeeCCC
Confidence 54311 01 1111 1234555554333222221 688899887653
No 355
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=84.19 E-value=0.47 Score=24.68 Aligned_cols=11 Identities=45% Similarity=0.803 Sum_probs=8.6
Q ss_pred CCceeccCCCC
Q 012679 27 NLDRFIPNRSA 37 (458)
Q Consensus 27 ~~dr~ip~~~~ 37 (458)
.-++|||+|-+
T Consensus 4 ~~eKFiPsRPA 14 (26)
T 2rqw_B 4 ANGKFIPSRPA 14 (26)
T ss_dssp CCCSSCCSSCC
T ss_pred cccccccCCCC
Confidence 34899999964
No 356
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=82.92 E-value=32 Score=32.41 Aligned_cols=276 Identities=11% Similarity=0.104 Sum_probs=140.9
Q ss_pred cceeeccCCCeEEEEcCCEEEEEECCC-CCe--------eeEEEec-CCCCCEEEEEEcCCCCEEEEEecC-CeEEEEeC
Q 012679 144 LNLLDWGSSNVLAIALGSTVYLWDASD-GTT--------SELVTVD-DENGPVTSVNWAPDGRHIAIGLNN-CQVQLWDS 212 (458)
Q Consensus 144 ~~~~~~~~~~~la~~~d~~v~iwd~~~-~~~--------~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~d-g~v~iwd~ 212 (458)
+..++-.....++...++.|+.|-... +++ .....+. .....|..|+... .+.+.-..+ |.|+.|-.
T Consensus 18 v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~--~ht~al~~~gg~v~~wG~ 95 (406)
T 4d9s_A 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA--DHTVAYSQSGMEVYSWGW 95 (406)
T ss_dssp EEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTTTEEEEEEC
T ss_pred eEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCc--ceEEEEECCCCEEEEEcC
Confidence 444666667788999999999996543 111 1111121 1123577776543 333334445 59999954
Q ss_pred CCce-----------eeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCe---------e-EEEEccc-ccce
Q 012679 213 TANR-----------QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDH---------I-VETYRGH-NQEV 270 (458)
Q Consensus 213 ~~~~-----------~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~---------~-~~~~~~h-~~~v 270 (458)
...- ....+.......|..++......+.-..+|.|+.|-...... . ...+... ...|
T Consensus 96 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i 175 (406)
T 4d9s_A 96 GDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRI 175 (406)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCE
T ss_pred CCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcE
Confidence 3211 111122113346888888777777788999999997543211 0 1111111 2245
Q ss_pred EeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC------CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSN------SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF 344 (458)
Q Consensus 271 ~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l 344 (458)
..++. ...+.+.-..||.|+.|-....... ....+..........|..++... ...++.. .+|.|+.
T Consensus 176 ~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~ht~~l~---~~G~v~~ 248 (406)
T 4d9s_A 176 KMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW--RHTISVS---YSGALYT 248 (406)
T ss_dssp EEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS--SEEEEEE---TTCCEEE
T ss_pred EEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC--CcEEEEc---CCCCEEE
Confidence 55554 3445566678999999975432211 00111111111123455665543 2333332 6889999
Q ss_pred EECCCCCe---------e--EEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee-----------eEEEe
Q 012679 345 WNTHTGAC---------L--NSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK-----------MAELS 400 (458)
Q Consensus 345 wd~~~~~~---------~--~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~-----------~~~~~ 400 (458)
|=...... . ..+. ....|..++.-.....+++ .+|.|+.|=....-+ ...+.
T Consensus 249 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt----~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 324 (406)
T 4d9s_A 249 YGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALT----SDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 324 (406)
T ss_dssp EECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEE----TTSCEEEEECCTTSTTCSSSSSCEEEEEEEC
T ss_pred eeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEc----CCCeEEEeeCCCCCCCCCCCCCCCccCEEEe
Confidence 96543211 0 1111 1223555544333222222 688888886543111 11111
Q ss_pred -CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 401 -GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 401 -~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
.....|..++.... ..+.-..||.|..|=-..
T Consensus 325 ~~~~~~v~~va~G~~--hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 325 FPDDQKVVQVSCGWR--HTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp CGGGCCEEEEEECSS--EEEEEETTSCEEEEECCT
T ss_pred ccCCCcEEEEEeCCC--eEEEEeCCCCEEEecCCC
Confidence 12245777766433 444556889999997644
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.17 E-value=28 Score=37.10 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=28.8
Q ss_pred ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 269 EVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 269 ~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
.+.++...++..++++-+.|+++++|++.++..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 466777888899999999999999999998865
No 358
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=79.48 E-value=41 Score=31.42 Aligned_cols=272 Identities=12% Similarity=0.084 Sum_probs=125.9
Q ss_pred CCCeEEEEcCCEEEEEECCC-CCe-----eeE---EEecC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce----
Q 012679 151 SSNVLAIALGSTVYLWDASD-GTT-----SEL---VTVDD-ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---- 216 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~-~~~-----~~~---~~~~~-h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---- 216 (458)
...+++...+|.|+.|=... |++ ... ..+.. ....|..|+- ...+.+.-..||.|..|-....-
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~ 87 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGI 87 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCC
Confidence 35678888899999996442 221 001 11110 0123444443 34456666789999999543211
Q ss_pred -------eeEEecCCCcccEEEEE--eCCCeEEEEeCCCcEEEEEccCCCe----------eEEEEccc-ccceEeEEEc
Q 012679 217 -------QLRTLRGGHRSRVGSLA--WNNHILTTGGMDGLIINNDVRVRDH----------IVETYRGH-NQEVCGLKWS 276 (458)
Q Consensus 217 -------~~~~~~~~~~~~v~~l~--~~~~~l~sg~~dg~i~vwd~~~~~~----------~~~~~~~h-~~~v~~l~~s 276 (458)
....+.......+..++ ......+.-..+|.|+.|-...... ....+... ...|..++.
T Consensus 88 g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~- 166 (389)
T 3kci_A 88 GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA- 166 (389)
T ss_dssp SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE-
T ss_pred CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe-
Confidence 11112211222333333 3456677778899999996432110 01111111 124555554
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCC------CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679 277 ASGQQLASGGNDNLLHIWDRSMASS------NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 277 pd~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
-..+.+.-..||.|+.|-...... .....+..........|..++........++.. .|+.|..|-....
T Consensus 167 -G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~---~~G~v~~wG~n~~ 242 (389)
T 3kci_A 167 -GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT---DDDTVWSWGDGDY 242 (389)
T ss_dssp -CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---TTTEEEEEECCGG
T ss_pred -CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc---cCCEEEEEeCCCC
Confidence 344566667899999997543211 001111111111123466666543223344433 7899999965421
Q ss_pred -C--------ee--EEEeC--CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-----------eeEEEeCC-CCc
Q 012679 351 -A--------CL--NSVDT--GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-----------KMAELSGH-TSR 405 (458)
Q Consensus 351 -~--------~~--~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-----------~~~~~~~h-~~~ 405 (458)
+ .. ..+.. ...|..++........++ .+|.|..|-....- ....+..- ...
T Consensus 243 GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt----~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~ 318 (389)
T 3kci_A 243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALT----KSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK 318 (389)
T ss_dssp GTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEE----TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCC
T ss_pred CCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEe----CCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCC
Confidence 1 01 11111 223555555443333332 68889999654211 11112211 235
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 406 VLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 406 V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
|..++.... ..+....||.|..|=....
T Consensus 319 v~~ia~G~~--h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 319 VIAIATGSL--HCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp EEEEEECSS--EEEEEETTCCEEEEECCTT
T ss_pred EEEEEeccC--eEEEECCCCCEEEeeCCCC
Confidence 777776543 4455678999999977543
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=76.45 E-value=56 Score=31.44 Aligned_cols=107 Identities=10% Similarity=0.033 Sum_probs=61.6
Q ss_pred cceeEEEecCCCC-cEEEEeCCCCCCeEEEEECCCC---CeeEEEe----C------CCCeEEEEEcCC---CCeEEEEe
Q 012679 316 SAVKAIAWCPFQS-NLLATGGGGGDRCIKFWNTHTG---ACLNSVD----T------GSQVCALLWNKN---ERELLSSH 378 (458)
Q Consensus 316 ~~v~~l~~~p~~~-~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~----~------~~~v~~~~~s~~---~~~l~~~~ 378 (458)
..-..|+|.|++. .++++- ..|.|++++.... ..+..+. . ......++++|+ ...|+++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e---r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE---KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE---TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEe---CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 3457899999875 577765 6899999975432 1222221 1 245788999996 33444432
Q ss_pred cC-CC----------CcEEEEeCCC----------ceeeEEEe--CCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679 379 GF-TQ----------NQLTLWKYPS----------MVKMAELS--GHTSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 379 g~-~d----------~~i~iwd~~~----------~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
.. .+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 21 11 1344465532 22333332 1112357899999998877776543
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.02 E-value=14 Score=39.47 Aligned_cols=39 Identities=13% Similarity=0.263 Sum_probs=31.1
Q ss_pred ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679 317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358 (458)
Q Consensus 317 ~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~ 358 (458)
.+.+++..++...+++.+ .|+++|+|++.+++++.+.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~---~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLS---LDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEE---TTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEE---CCCEEEEEECCCCCeEeeecc
Confidence 456777777666666665 899999999999999988753
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=66.14 E-value=86 Score=29.25 Aligned_cols=187 Identities=8% Similarity=0.025 Sum_probs=99.3
Q ss_pred CEEEEEECCCC--CeeeEEEecC----CCCCEEEEEEc---CC----CCEEEEEe-cCCeEEEEeCCCceeeEEecCCCc
Q 012679 161 STVYLWDASDG--TTSELVTVDD----ENGPVTSVNWA---PD----GRHIAIGL-NNCQVQLWDSTANRQLRTLRGGHR 226 (458)
Q Consensus 161 ~~v~iwd~~~~--~~~~~~~~~~----h~~~V~~v~~s---~~----g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~ 226 (458)
-.|.+||+.++ ++.+...+.. ....+..+.+. |+ +.++.++. ..+.|.|+|+.+++..+.+.. +-
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~-~~ 201 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP-TF 201 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG-GG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC-CC
Confidence 47889999998 8766666542 23468888887 22 34444443 356899999999988776532 11
Q ss_pred ccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC----CCEEEEEECCC-cEEEEe---CCC
Q 012679 227 SRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS----GQQLASGGNDN-LLHIWD---RSM 298 (458)
Q Consensus 227 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd----~~~l~sg~~dg-~i~iwd---~~~ 298 (458)
. .+....+ .-+|.- . .+ ...|.+|+++|+ ++.|.-..-.+ .++--. ++.
T Consensus 202 ~------pd~~~~~--~i~G~~-----------~-~~---~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~ 258 (381)
T 3q6k_A 202 K------AERPTKF--DYGGKE-----------Y-EF---KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQ 258 (381)
T ss_dssp S------CCSCEEE--EETTEE-----------E-EE---CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSS
T ss_pred c------cccCcce--EECCEE-----------e-Ee---ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhC
Confidence 0 0100000 001111 1 11 245888999997 67776665443 233222 122
Q ss_pred CCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC----CeeEEEeCC---CCeEEEEEcC
Q 012679 299 ASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG----ACLNSVDTG---SQVCALLWNK 369 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~----~~~~~~~~~---~~v~~~~~s~ 369 (458)
...... +..+... ...-..++..+..+.++++-- ....|..|+..+. .....+... .-+..+.+..
T Consensus 259 ~~~~~~---v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~--~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~ 333 (381)
T 3q6k_A 259 KGGKLN---PELLGNRGKYNDAIALAYDPKTKVIFFAEA--NTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS 333 (381)
T ss_dssp TTCCCC---CEEEEECCTTCCEEEEEECTTTCEEEEEES--SSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT
T ss_pred cchhhc---eEEeeecCCCCCcceEEEeCCCCeEEEEec--cCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC
Confidence 211111 2222111 123335566644567777665 7889999998751 122222222 2256666666
Q ss_pred CCCeEEE
Q 012679 370 NERELLS 376 (458)
Q Consensus 370 ~~~~l~~ 376 (458)
++...+.
T Consensus 334 ~g~Lwv~ 340 (381)
T 3q6k_A 334 KGGLWFM 340 (381)
T ss_dssp TSCEEEE
T ss_pred CCeEEEE
Confidence 6654444
No 362
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=64.10 E-value=96 Score=29.09 Aligned_cols=268 Identities=9% Similarity=0.008 Sum_probs=136.7
Q ss_pred CCCeEEEEcCCEEEEEECCC-CC---------eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee---
Q 012679 151 SSNVLAIALGSTVYLWDASD-GT---------TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ--- 217 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~-~~---------~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~--- 217 (458)
....++...+|.|+.|-... ++ ......+.. ...|..|+. .+.+.++-..||.|..|-....-.
T Consensus 33 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~ 109 (423)
T 3mvd_K 33 LELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAG-IPDAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGR 109 (423)
T ss_dssp CCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCS-CSSEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCS
T ss_pred CccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccC-CCCceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCC
Confidence 34455566778888884332 11 111122222 234666655 355677778899999996432111
Q ss_pred ----------eEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEc--cCCCee---------EEEEcccccceEeEEEc
Q 012679 218 ----------LRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDV--RVRDHI---------VETYRGHNQEVCGLKWS 276 (458)
Q Consensus 218 ----------~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~--~~~~~~---------~~~~~~h~~~v~~l~~s 276 (458)
...+. ....|..++......+.-..+|.|+.|-. .....+ ..........|..++..
T Consensus 110 ~~~~~~~~~~P~~v~--~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G 187 (423)
T 3mvd_K 110 DTSEDGSESKPDLID--LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG 187 (423)
T ss_dssp CCCSTTSSSSCEECC--CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC
T ss_pred CCcCCccccCCeEEc--CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC
Confidence 11111 23467788887777777789999999975 222111 11111123346555543
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCCCC-----------------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679 277 ASGQQLASGGNDNLLHIWDRSMASSNS-----------------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 277 pd~~~l~sg~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
..+.+.-..||.|+.|-........ ...+..........|..++-.. ...++.-. .|
T Consensus 188 --~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~--~~~~~~~~--~~ 261 (423)
T 3mvd_K 188 --ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN--YCTFMRES--QT 261 (423)
T ss_dssp --SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET--TEEEEEET--TT
T ss_pred --CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECC--cEEEEEEC--CC
Confidence 3455666789999999644321100 0011111111223455555433 22333222 68
Q ss_pred CeEEEEECCCCC-----------eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc------------ee
Q 012679 340 RCIKFWNTHTGA-----------CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM------------VK 395 (458)
Q Consensus 340 ~~i~lwd~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~------------~~ 395 (458)
+.|..|-..... ...... ....|..++.-.....+++ .+|.|+.|=.... ..
T Consensus 262 g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt----~~G~v~~wG~n~~GqLG~g~~~~~~~~ 337 (423)
T 3mvd_K 262 QVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILT----TDLKCSVVGRPEYGRLGLGDVKDVVEK 337 (423)
T ss_dssp CCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEE----TTCCEEEEECCGGGTTCSSSCCSCEEE
T ss_pred CeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEe----CCCcEEEEECCCCCCCCCCCccccccC
Confidence 889888643211 111111 1234555554433333222 6888998865321 11
Q ss_pred eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 396 MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 396 ~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
...+..-...|..|+.... ..+.-..||.|+.|=....
T Consensus 338 p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~~ 375 (423)
T 3mvd_K 338 PTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGVN 375 (423)
T ss_dssp EEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECCTT
T ss_pred ceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCCC
Confidence 1222222336777877644 3344478999999976543
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.51 E-value=31 Score=34.45 Aligned_cols=61 Identities=20% Similarity=0.081 Sum_probs=44.3
Q ss_pred CeEEEEEcCCCCeEEEEecC----------CCCcEEEEeCCCceeeEEEeCCC-CcEEEEEEcCCCCEEEEE
Q 012679 361 QVCALLWNKNERELLSSHGF----------TQNQLTLWKYPSMVKMAELSGHT-SRVLFMAQSPDGCTVASA 421 (458)
Q Consensus 361 ~v~~~~~s~~~~~l~~~~g~----------~d~~i~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~ 421 (458)
..-.|+|++.|..+++.-|. ..+.+.+.+..+++...-+.++. ..++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35679999999977775432 12456666777777666666654 579999999999988765
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=62.79 E-value=23 Score=36.18 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=42.9
Q ss_pred cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCe--EEEEEcC---C-------CCeEEEEecCCCC
Q 012679 316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV--CALLWNK---N-------ERELLSSHGFTQN 383 (458)
Q Consensus 316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v--~~~~~s~---~-------~~~l~~~~g~~d~ 383 (458)
..|.++.+. ...+++.+ .|+++|+||+.+++++.+.+..... ..-...| . +.++++-.-...|
T Consensus 222 ~~Is~~~~~--~~fLftL~---~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G 296 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLT---QNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENG 296 (729)
T ss_dssp CEEEEEEET--TTEEEEEE---TTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTC
T ss_pred ceEEEeccC--CcEEEEEE---cCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCC
Confidence 345555543 45666655 8999999999999999888663221 0000111 1 2444443344577
Q ss_pred cEEEEeCC
Q 012679 384 QLTLWKYP 391 (458)
Q Consensus 384 ~i~iwd~~ 391 (458)
..++|.+.
T Consensus 297 ~Fk~~~l~ 304 (729)
T 3f7f_A 297 LFQMGTLL 304 (729)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 88888874
No 365
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=59.78 E-value=51 Score=32.69 Aligned_cols=63 Identities=19% Similarity=0.076 Sum_probs=44.7
Q ss_pred CCeEEEEEcCCCCeEEEEecC----------CCCcEEEEeCCCceeeEEEeCC-CCcEEEEEEcCCCCEEEEEe
Q 012679 360 SQVCALLWNKNERELLSSHGF----------TQNQLTLWKYPSMVKMAELSGH-TSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 360 ~~v~~~~~s~~~~~l~~~~g~----------~d~~i~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s 422 (458)
.....|.|.++|...+.+-+. ..+.+..++..+++...-+.+. ...++.++|+||+++|..+-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 346789999999888854321 1236777777777766555544 35789999999999887663
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=59.34 E-value=1.6e+02 Score=30.08 Aligned_cols=255 Identities=10% Similarity=0.046 Sum_probs=123.4
Q ss_pred CCceeeeCCCCCCc----cccceee-ccC--CC-eEEEEcCC----EEEEEECCCCCeeeEEEec-CCCC------CEEE
Q 012679 128 SSERTLDAPDLVDD----YYLNLLD-WGS--SN-VLAIALGS----TVYLWDASDGTTSELVTVD-DENG------PVTS 188 (458)
Q Consensus 128 ~~~~~l~~~~~~~d----~~~~~~~-~~~--~~-~la~~~d~----~v~iwd~~~~~~~~~~~~~-~h~~------~V~~ 188 (458)
..+.+||.-.+..+ +.+.-++ .++ +. +++.+.+| .|+++|+.+++...- .+. .-.. ....
T Consensus 111 ~wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~~~~k~~~~~~~~~~~ 189 (711)
T 4hvt_A 111 NWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFEPITNSGKLLEGKFTY 189 (711)
T ss_dssp CCEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSCCBCTTCCBCCEETCC
T ss_pred CcEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccccccccccccccccce
Confidence 45777776555444 3333333 333 33 34444444 799999999875210 111 0000 1134
Q ss_pred EEEcCCCCEEEEEec-----------CCeEEEEeCCCce--eeEEecCCCcccEE-EEEe--CCC-----eEEEEeCC--
Q 012679 189 VNWAPDGRHIAIGLN-----------NCQVQLWDSTANR--QLRTLRGGHRSRVG-SLAW--NNH-----ILTTGGMD-- 245 (458)
Q Consensus 189 v~~s~~g~~la~g~~-----------dg~v~iwd~~~~~--~~~~~~~~~~~~v~-~l~~--~~~-----~l~sg~~d-- 245 (458)
++|. |+.-+.++.. ...|+.|.+-+.. -...+.. ....+. .... ++. .+++.+.+
T Consensus 190 ~~W~-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 267 (711)
T 4hvt_A 190 PTWI-NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEV-PKEYIYVSAGKLLSDTISSSLIFISANKDFY 267 (711)
T ss_dssp EEEE-ETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEEC-CTTSCEEEEEESSCTTTCSSEEEEEEESSSS
T ss_pred eeEE-CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEecc-CCCceEEEEEEecCCCceEEEEEEEEecccC
Confidence 4787 4444444421 2368888876542 2223332 222222 1222 333 24443322
Q ss_pred -CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE----------ECCCcEEEEeCCCCCCCC--cceeeeee-
Q 012679 246 -GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG----------GNDNLLHIWDRSMASSNS--VTQWLHRL- 311 (458)
Q Consensus 246 -g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg----------~~dg~i~iwd~~~~~~~~--~~~~~~~~- 311 (458)
..+.+.|..........+..... ..+..+.++.+++.. ...+.|.+.|+....... ...+...+
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT 345 (711)
T ss_dssp CEEEEEEECSSSSCEEEECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC
T ss_pred ceeEEEEcCCCCCCcceEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC
Confidence 34566665432222222221111 112334455555532 245778888887642100 00111112
Q ss_pred cccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCC-eeEE-EeC--CCCeEEEEEcCCCCeEEEEecC--CCC
Q 012679 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGA-CLNS-VDT--GSQVCALLWNKNERELLSSHGF--TQN 383 (458)
Q Consensus 312 ~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~-~~~~-~~~--~~~v~~~~~s~~~~~l~~~~g~--~d~ 383 (458)
......+..+.|..+ .++++.. .++ .|.++|+.++. .... +.. .+.+......+++..++..... .-.
T Consensus 346 ~~~~~~l~~~~~~~~--~l~~~~~--~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~ 421 (711)
T 4hvt_A 346 PTANEVFNFISTTKD--RVFLATY--DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPP 421 (711)
T ss_dssp CCTTEEEEEEEECSS--CEEEEEE--ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCC
T ss_pred CCCCCeEEEEEEECC--EEEEEEE--ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCC
Confidence 223456778888874 5666554 454 47778876664 2333 333 3456666677777666554322 346
Q ss_pred cEEEEeCC
Q 012679 384 QLTLWKYP 391 (458)
Q Consensus 384 ~i~iwd~~ 391 (458)
.+..+|..
T Consensus 422 ~~~~~d~~ 429 (711)
T 4hvt_A 422 TIYLWVKT 429 (711)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 78888876
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=55.74 E-value=1.2e+02 Score=27.35 Aligned_cols=192 Identities=11% Similarity=0.019 Sum_probs=105.8
Q ss_pred CCeEEEEeCCCcEEEEEccCCCee------E--EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC---CCCCCc
Q 012679 236 NHILTTGGMDGLIINNDVRVRDHI------V--ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM---ASSNSV 304 (458)
Q Consensus 236 ~~~l~sg~~dg~i~vwd~~~~~~~------~--~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~---~~~~~~ 304 (458)
...++..+.+|.|+--.+..-... . ..+.. ...+..+........++..++.|.++-..... ......
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 456788899999987765432110 1 11122 23344444444566778888888877665432 111000
Q ss_pred cee---eeeecccccceeEEEecC---CCCcEEEEeCCCCCCeEEEEECCC-------CCeeEEEeCCCCeEEEEEcCCC
Q 012679 305 TQW---LHRLEEHTSAVKAIAWCP---FQSNLLATGGGGGDRCIKFWNTHT-------GACLNSVDTGSQVCALLWNKNE 371 (458)
Q Consensus 305 ~~~---~~~~~~h~~~v~~l~~~p---~~~~ll~s~~g~~d~~i~lwd~~~-------~~~~~~~~~~~~v~~~~~s~~~ 371 (458)
..+ ...+.. ...|.++...+ ....++... ..|.++...+.. |.....+..+..+..+......
T Consensus 87 G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T---~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 87 GQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTT---ASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp -CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEE---TTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred CcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEe---CCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 000 112222 23344443322 234444433 788888887642 2233333445666666665555
Q ss_pred CeEEEEecCCCCcEEEEeCCC---------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 372 RELLSSHGFTQNQLTLWKYPS---------MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd~~~---------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
..++.++ .+|.+..+.... |.....+.. ...|..+..-.++..|++.+..|.++..++..-
T Consensus 163 ~~i~l~T--~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 163 EKVICLS--KKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp CEEEEEE--TTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred CEEEEEe--CCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 6666644 788888887643 222333332 355667666666677888999999999988654
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.37 E-value=1.3e+02 Score=32.87 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=27.5
Q ss_pred ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 269 EVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 269 ~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
.+.+++..++..++++-+.|++++||++.++..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 271 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCe
Confidence 344566677889999999999999999998865
No 369
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=51.44 E-value=1.6e+02 Score=27.54 Aligned_cols=231 Identities=12% Similarity=0.050 Sum_probs=120.9
Q ss_pred cceeeccCCCeEEEEcCCEEEEEECCC-CCe-----------eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEe
Q 012679 144 LNLLDWGSSNVLAIALGSTVYLWDASD-GTT-----------SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211 (458)
Q Consensus 144 ~~~~~~~~~~~la~~~d~~v~iwd~~~-~~~-----------~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd 211 (458)
+..++-.....++...+|.|+.|-... +++ .+ ..+. -...|..|+.. ..+.++-+.||.|..|-
T Consensus 61 i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P-~~v~-l~~~i~~va~G--~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVP-GKVE-LQEKVVQVSAG--DSHTAALTDDGRVFLWG 136 (413)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSC-EECC-CCSCEEEEEEC--SSEEEEEETTSCEEEEE
T ss_pred eEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCC-eEec-CCCcEEEEecC--CCeEEEEcCCCcEEEee
Confidence 445555667788889999999997543 110 01 1111 12357666654 34566667889999996
Q ss_pred C--CC-cee-----------eEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeE-----------------
Q 012679 212 S--TA-NRQ-----------LRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIV----------------- 260 (458)
Q Consensus 212 ~--~~-~~~-----------~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~----------------- 260 (458)
. .. +++ ...+. ....|..++......+.-..+|.|+.|-......+-
T Consensus 137 ~~~n~~GqlG~~~~~~~~~~P~~v~--~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 214 (413)
T 1a12_A 137 SFRDNNGVIGLLEPMKKSMVPVQVQ--LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLER 214 (413)
T ss_dssp CEEETTEEEESSBBTBCEEEEEEEC--CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHH
T ss_pred CCcCCCCccCcCCccccccCCEEec--CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccc
Confidence 4 21 110 11111 345678888877777777889999999654321100
Q ss_pred ----EEEcc------cccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC------Cccee--eeeecccccceeEEE
Q 012679 261 ----ETYRG------HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN------SVTQW--LHRLEEHTSAVKAIA 322 (458)
Q Consensus 261 ----~~~~~------h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~------~~~~~--~~~~~~h~~~v~~l~ 322 (458)
..... ....|..++... .+.+.-..||.|+.|-....... ....+ +..+......|..++
T Consensus 215 ~~~P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia 292 (413)
T 1a12_A 215 LLVPKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS 292 (413)
T ss_dssp HHSCEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEE
T ss_pred cccCceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEe
Confidence 00000 123455555433 34444568899999976543211 00111 111111113366666
Q ss_pred ecCCCCcEEEEeCCCCCCeEEEEECCC------C---Ce---eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 323 WCPFQSNLLATGGGGGDRCIKFWNTHT------G---AC---LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~------~---~~---~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
-.. ...++.. .||.|+.|=... + .. -..+..-..|..++.-.....+++ .+|.|+.|=.
T Consensus 293 ~G~--~hs~al~---~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt----~~G~v~~wG~ 363 (413)
T 1a12_A 293 GGQ--HHTVCMD---SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVT----KDGRVFAWGM 363 (413)
T ss_dssp ECS--SEEEEEE---TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEE----TTSCEEEEEC
T ss_pred ccc--ceEEEEe---CCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEe----CCCCEEEecC
Confidence 543 2333332 689999996532 1 00 111122235666655433322222 6888999965
Q ss_pred C
Q 012679 391 P 391 (458)
Q Consensus 391 ~ 391 (458)
.
T Consensus 364 n 364 (413)
T 1a12_A 364 G 364 (413)
T ss_dssp C
T ss_pred C
Confidence 4
No 370
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=50.06 E-value=1.4e+02 Score=26.68 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=99.0
Q ss_pred CeEEEEeCCCcEEEEEccCCCee--------EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe---CCCCCCCCcc
Q 012679 237 HILTTGGMDGLIINNDVRVRDHI--------VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD---RSMASSNSVT 305 (458)
Q Consensus 237 ~~l~sg~~dg~i~vwd~~~~~~~--------~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd---~~~~~~~~~~ 305 (458)
..+++.+.+|.|+--.+..-... ...+.. ...+..+........|+..++.|.++-+. +.........
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 45778888998876665432110 001222 23343444444556677777888765544 3333221111
Q ss_pred eeee---eecccccceeEEEec---CCCCcEEEEeCCCCCCeEEEEECCC-------CCeeEEEeCCCCeEEEEEcCCCC
Q 012679 306 QWLH---RLEEHTSAVKAIAWC---PFQSNLLATGGGGGDRCIKFWNTHT-------GACLNSVDTGSQVCALLWNKNER 372 (458)
Q Consensus 306 ~~~~---~~~~h~~~v~~l~~~---p~~~~ll~s~~g~~d~~i~lwd~~~-------~~~~~~~~~~~~v~~~~~s~~~~ 372 (458)
.++. .+. ....|.++... .++..+++.. ..|.++-..+.. |.....+..+..+..+.......
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T---~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 83 RPIVNLLPLE-QDERITAILPVTEFEEGVKVFMAT---ANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEE---TTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred eEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEe---CCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 1111 222 23345554332 2233344433 789999887642 21222233345666655555555
Q ss_pred eEEEEecCCCCcEEEEeCCC---------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 373 ELLSSHGFTQNQLTLWKYPS---------MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~---------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
.++..+ .+|.+..++... +.....+. ....|.++....++..|++.+..|.++-.++..
T Consensus 159 ~i~l~T--~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 159 EVMLFS--AEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEEEE--TTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEEEC--CCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 666543 678877776532 22222232 235576776656667888899999999888754
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=49.49 E-value=1.4e+02 Score=26.32 Aligned_cols=154 Identities=10% Similarity=0.047 Sum_probs=86.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC--------
Q 012679 278 SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-------- 349 (458)
Q Consensus 278 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-------- 349 (458)
++.+++..+.+|.++...+..............+.. ...+..+........+++.. ..|.+..++...
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T---~~G~~~r~~~~eip~~gR~a 154 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFT---KKGRVARFSVREVPPSTPGA 154 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEE---TTSEEEEEEGGGSCBCCTTC
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEE---CCCEEEEEEhhhCCCcCCCC
Confidence 467899999999999888654321100111222333 33455555554444555544 678877776432
Q ss_pred -CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-------ceeeEEEeCCCCcEEEEEEcCCCCEEEEE
Q 012679 350 -GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-------MVKMAELSGHTSRVLFMAQSPDGCTVASA 421 (458)
Q Consensus 350 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-------~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 421 (458)
|.....+..+..|..+...+++.+++.++ ..|.++...+.. ++-+..+ ...+.+..+....+...++..
T Consensus 155 ~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T--~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~ 231 (276)
T 3no0_A 155 RGVQGIKLEKNDETSGLRIWNGEPYLLVIT--AKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLIT 231 (276)
T ss_dssp CCEECCCCCTTCCEEEEEEESSCSEEEEEE--TTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEE
T ss_pred CCEEEEccCCCCEEEEEEEeCCCCEEEEEe--CCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEE
Confidence 22222334456677766666666777654 678887776532 1122223 233445555443444567778
Q ss_pred eCCCcEEE--EecCCCCcc
Q 012679 422 AADETLRF--WNVFGAPQV 438 (458)
Q Consensus 422 s~Dg~i~i--W~~~~~~~~ 438 (458)
+.+|.+.. +++..-...
T Consensus 232 t~~G~~ir~~~~~~~i~~~ 250 (276)
T 3no0_A 232 TKNGKAFYDKINQKDIPLS 250 (276)
T ss_dssp ETTSCEEEEEEEGGGSCBC
T ss_pred cCCCeEEEeeeCHHHCCCc
Confidence 88899888 887654433
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.53 E-value=67 Score=35.01 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
.+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556666788899999999999999999999888755
No 373
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=44.68 E-value=2.4e+02 Score=27.81 Aligned_cols=247 Identities=14% Similarity=0.161 Sum_probs=124.0
Q ss_pred EEEEECCCCCeeeEEEecCCCCC---------------EEEEEEcC-CCCEEEEEe---cCCeEEEEeCCCceeeEE--e
Q 012679 163 VYLWDASDGTTSELVTVDDENGP---------------VTSVNWAP-DGRHIAIGL---NNCQVQLWDSTANRQLRT--L 221 (458)
Q Consensus 163 v~iwd~~~~~~~~~~~~~~h~~~---------------V~~v~~s~-~g~~la~g~---~dg~v~iwd~~~~~~~~~--~ 221 (458)
|.++|-.+|+......+....+. ..++++-. +...++.+- ....|..||...+++... +
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 78888888887444433221221 22333321 222333332 123477888777654332 2
Q ss_pred cC------------CCcccEEEEEeCC-CeEEEEe----CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC--CCEE
Q 012679 222 RG------------GHRSRVGSLAWNN-HILTTGG----MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS--GQQL 282 (458)
Q Consensus 222 ~~------------~~~~~v~~l~~~~-~~l~sg~----~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd--~~~l 282 (458)
.. .|.-.|..+..+| ..|+.|+ .||++ +|.. -.+|...+.-..|.|+ |..+
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st---------~~gHGDa~hv~dldP~r~GlEv 380 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYST---------GLGHGDALHTGDLDPGRPGLEV 380 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEEC---------SCCCCSCEEEECCCTTSSSCEE
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeC---------CCCCCCeeEEeecCCCCCCcEE
Confidence 21 2555566665555 4555544 33333 3332 2378888888888887 4566
Q ss_pred EEEECCC----cEEEEeCCCCCCCCcceeeeeecc--cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE
Q 012679 283 ASGGNDN----LLHIWDRSMASSNSVTQWLHRLEE--HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356 (458)
Q Consensus 283 ~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~ 356 (458)
+.+.+++ -..+.|..+++. +..... +.+.-....+.|+...+=+-++ . .+++. +|+.+...
T Consensus 381 ~~~~E~~~~~~G~~~~dA~tG~v------lw~~~~~~d~Gr~~~~Didp~~pG~E~w~~----~--~l~~~-~G~~i~~~ 447 (591)
T 2zux_A 381 FQVHEDKNAKYGLSFRDAATGKI------LWGVYAGKDVGRGMAADIDPRYPGQEVWAN----G--SLYSA-KGVKIGSG 447 (591)
T ss_dssp EEECCCTTSSCSEEEEETTTCCE------EEEECCSSCCCCEEEECCCTTSSSCEEEET----T--EEECT-TSCBCSSC
T ss_pred EEEecCCCCCCccEEEECCCCcE------EEEcCCCCCCCceeEEecCCCCCceEEEec----C--ceECC-CCCEecCC
Confidence 6666542 345678777765 433322 2333344445554332211111 1 35554 34444332
Q ss_pred eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--eeEEEeC-------CCCcEEEEEEcCCC-CEEEEEeCC-C
Q 012679 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--KMAELSG-------HTSRVLFMAQSPDG-CTVASAAAD-E 425 (458)
Q Consensus 357 ~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--~~~~~~~-------h~~~V~~l~~spdg-~~l~s~s~D-g 425 (458)
........+-|..+...-+. ..+.|.-|+...++ .+.++.+ ...+..+..+--|. .-|+..+.| .
T Consensus 448 ~p~~~N~~i~WdGDl~rell----d~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~ 523 (591)
T 2zux_A 448 VPSSTNFGIWWDGDLLREQL----DSNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSS 523 (591)
T ss_dssp CCSCCSEEECCSSSSSCEEE----ETTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSS
T ss_pred CCCCcceeEEECCCCcHhhh----CCceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCC
Confidence 11222345778877744443 23478889887665 4444432 11233333443333 234445555 4
Q ss_pred cEEEEecCCCC
Q 012679 426 TLRFWNVFGAP 436 (458)
Q Consensus 426 ~i~iW~~~~~~ 436 (458)
.|+||......
T Consensus 524 ~LrIYtt~~pt 534 (591)
T 2zux_A 524 ALRIYTTTIPT 534 (591)
T ss_dssp EEEEECCCCCC
T ss_pred eEEEEeCCCCC
Confidence 69999875443
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.29 E-value=83 Score=31.35 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=41.2
Q ss_pred eeEEEecCCCCcEEEEeCCC---------CCCeEEEEECCCCCeeEEEe--CCCCeEEEEEcCCCCeEEEEe
Q 012679 318 VKAIAWCPFQSNLLATGGGG---------GDRCIKFWNTHTGACLNSVD--TGSQVCALLWNKNERELLSSH 378 (458)
Q Consensus 318 v~~l~~~p~~~~ll~s~~g~---------~d~~i~lwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~ 378 (458)
.-.|+|+|++..+++.-++. ....+.+.+..+++....+. .+..++.++|+|+++.|++..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 45689999876455443211 12346666777777665543 467899999999999988743
No 375
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=41.81 E-value=2e+02 Score=26.02 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=92.3
Q ss_pred CccccceeeccC-CCeEEEEcCCEEEEEEC---CCCC----eee---EEEecCCCCCEEEEEEcC---CCCEEEEEecCC
Q 012679 140 DDYYLNLLDWGS-SNVLAIALGSTVYLWDA---SDGT----TSE---LVTVDDENGPVTSVNWAP---DGRHIAIGLNNC 205 (458)
Q Consensus 140 ~d~~~~~~~~~~-~~~la~~~d~~v~iwd~---~~~~----~~~---~~~~~~h~~~V~~v~~s~---~g~~la~g~~dg 205 (458)
+|+....+.-+. +.++..+..|.++-..+ .... -.+ +..+.. ...|.++..-+ +..+++..+.+|
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 455554444444 66888888898776653 3221 111 122333 45566664433 578999999999
Q ss_pred eEEEEeCCCce-------eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEcc--CCCe------eEEEE-cccc
Q 012679 206 QVQLWDSTANR-------QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVR--VRDH------IVETY-RGHN 267 (458)
Q Consensus 206 ~v~iwd~~~~~-------~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~--~~~~------~~~~~-~~h~ 267 (458)
.|+--.+..-. ....+. ....+..+.. ....|+..+..|.+..+... .-.. -+..+ ....
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lk--e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~ 197 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLR--DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID 197 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCC--TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTT
T ss_pred EEEEeEHHHhhccccCceEEEEEC--CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCC
Confidence 99998765422 112222 2333443333 35678888899998877765 2110 01111 1234
Q ss_pred cceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
..|.++...+++.+|+..+..|.++.-.+..
T Consensus 198 d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 198 DRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp CCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 5577777666777899999999998877544
No 376
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=41.32 E-value=2.1e+02 Score=26.20 Aligned_cols=149 Identities=11% Similarity=0.029 Sum_probs=75.6
Q ss_pred ccceeecc---CCCeEEEEcCC----EEEEEECCCCCeeeEEE---ecC--------CCCCEEEEEEcC-C-CCEEEEEe
Q 012679 143 YLNLLDWG---SSNVLAIALGS----TVYLWDASDGTTSELVT---VDD--------ENGPVTSVNWAP-D-GRHIAIGL 202 (458)
Q Consensus 143 ~~~~~~~~---~~~~la~~~d~----~v~iwd~~~~~~~~~~~---~~~--------h~~~V~~v~~s~-~-g~~la~g~ 202 (458)
.+..+..+ ++.+++++..+ .|+..+-.......+.. +.. ....|.++++.| + ...|.+++
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~ 135 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT 135 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE
T ss_pred ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe
Confidence 45666665 36788887776 56555322223322211 111 112588899987 2 45666666
Q ss_pred cCCeEEEEeCCCceeeEEecC------------------CCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 203 NNCQVQLWDSTANRQLRTLRG------------------GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 203 ~dg~v~iwd~~~~~~~~~~~~------------------~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
..+.|...+ ..++.-..+.. .....+.+|.++ +..|+.+..++.|...+-. +.. ..
T Consensus 136 ~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~t-W~ 212 (394)
T 3b7f_A 136 SPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTD-WK 212 (394)
T ss_dssp ETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TSS-CE
T ss_pred cCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CCC-ce
Confidence 666665553 22222222210 022457888885 3556666555544443221 111 12
Q ss_pred EEcc-----c--------ccceEeEEEcCC-CCEEEEEECCCcEEEEe
Q 012679 262 TYRG-----H--------NQEVCGLKWSAS-GQQLASGGNDNLLHIWD 295 (458)
Q Consensus 262 ~~~~-----h--------~~~v~~l~~spd-~~~l~sg~~dg~i~iwd 295 (458)
.+.. + ...+.++.+.|+ ...|..+...+ |...+
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 2110 0 134888999985 45666666544 54443
No 377
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=40.93 E-value=2.4e+02 Score=26.80 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=85.4
Q ss_pred ccceeeccCCCeEEEEcCCEEEEEECCC-CCe-----ee--------------------------EEEecC-------CC
Q 012679 143 YLNLLDWGSSNVLAIALGSTVYLWDASD-GTT-----SE--------------------------LVTVDD-------EN 183 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~-~~~-----~~--------------------------~~~~~~-------h~ 183 (458)
.+..++-.....++...+|.|+.|-... |++ .. -..+.. ..
T Consensus 68 ~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~ 147 (473)
T 3of7_A 68 KIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEG 147 (473)
T ss_dssp CEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTT
T ss_pred CEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCC
Confidence 4556666778889999999999996542 111 00 001110 12
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCC---Cce------------eeEEecCCCcccEEEEEeCCCeEEEEeCCCcE
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDST---ANR------------QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLI 248 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~---~~~------------~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i 248 (458)
..|..|+.. ..+.++-+.+|.|+.|-.. .++ ....+..-....|..++......+.-..+|.|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v 225 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV 225 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCE
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeE
Confidence 456666654 3455566788999999741 111 11111111223588888877777888899999
Q ss_pred EEEEccCCCeeE------------EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 249 INNDVRVRDHIV------------ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 249 ~vwd~~~~~~~~------------~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
+.|-......+- ....-....|..++.- ..+.+.-..+|.|+.|-...
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~ 285 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG--ENHCFALTKDNKLVSWGLNQ 285 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC--SSEEEEEETTSCEEEEEECT
T ss_pred EEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC--CCeEEEEecCCCEEEeCCCC
Confidence 999654322110 0000011345555543 44555566788999996543
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=40.69 E-value=91 Score=30.92 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=29.9
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL 202 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~ 202 (458)
.|+.++..++++..+.... ....++.++|+||++.|.+.-
T Consensus 510 ~v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 510 QMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEEE
Confidence 6788888888876555322 245699999999999888764
No 379
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=40.25 E-value=2.3e+02 Score=26.35 Aligned_cols=236 Identities=11% Similarity=0.052 Sum_probs=121.5
Q ss_pred cceeeccCCCeEEEEcCCEEEEEECCC-CCe----------eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC
Q 012679 144 LNLLDWGSSNVLAIALGSTVYLWDASD-GTT----------SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212 (458)
Q Consensus 144 ~~~~~~~~~~~la~~~d~~v~iwd~~~-~~~----------~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~ 212 (458)
+..++-.....++...+|.|+.|-... +++ .....+. ....|..|+.. ..+.++-+.||.|..|-.
T Consensus 77 v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G--~~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 77 AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAG--DSHSACLLEDGRVFAWGS 153 (423)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEEC--SSEEEEEETTSCEEEEEC
T ss_pred ceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcC--cCeEEEEeCCCeEEEEeC
Confidence 345666667889999999999997543 110 0011111 13357666654 345556678999999975
Q ss_pred --CC-cee--------eEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCe----------------------e
Q 012679 213 --TA-NRQ--------LRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDH----------------------I 259 (458)
Q Consensus 213 --~~-~~~--------~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~----------------------~ 259 (458)
.. +++ ...........|..++......+.-..+|.|+.|-...... +
T Consensus 154 ~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p 233 (423)
T 3mvd_K 154 FRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRP 233 (423)
T ss_dssp EECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSC
T ss_pred CCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCC
Confidence 22 211 11111113456888888777777788999999996432211 0
Q ss_pred EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc-----ceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV-----TQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
..........|..++... ...++.-..||.|+.|-......... .............|..|+--. ...++..
T Consensus 234 ~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht~alt 310 (423)
T 3mvd_K 234 TQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHTVILT 310 (423)
T ss_dssp EEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEEEEEE
T ss_pred eEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeEEEEe
Confidence 111111123344444331 22223335788888886543221100 000011111134566666543 2333332
Q ss_pred CCCCCCeEEEEECCCC---------Cee---EEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 335 GGGGDRCIKFWNTHTG---------ACL---NSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 335 ~g~~d~~i~lwd~~~~---------~~~---~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
.||.|+.|=.... ... ..+.. ...|..++.......+++ .+|.|+.|=...
T Consensus 311 ---~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt----~~G~v~~wG~n~ 374 (423)
T 3mvd_K 311 ---TDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVT----IDGKLYSWGSGV 374 (423)
T ss_dssp ---TTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEE----TTSCEEEEECCT
T ss_pred ---CCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEc----CCCCEEEECCCC
Confidence 7899999965321 101 11111 225666665544333332 688999997654
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=38.73 E-value=50 Score=33.70 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=30.2
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG 223 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~ 223 (458)
.|.++.+ +..+|++-+.|.++++|++.+++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3665555 467999999999999999999998877664
No 381
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=36.85 E-value=2.4e+02 Score=25.49 Aligned_cols=236 Identities=8% Similarity=0.001 Sum_probs=123.0
Q ss_pred CEEEEEecCCeEEEEeCCCce-------eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEE---ccCCC-----e
Q 012679 196 RHIAIGLNNCQVQLWDSTANR-------QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINND---VRVRD-----H 258 (458)
Q Consensus 196 ~~la~g~~dg~v~iwd~~~~~-------~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd---~~~~~-----~ 258 (458)
..+++.+.+|.|+--.+.+-+ -+..+.......+..+.. ....|+.-+..|.++-.. +.... .
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 456777788887765432211 111222112333443333 456677677777765443 33221 1
Q ss_pred eEEE-Ec-ccccceEeEEEcC---CCCEEEEEECCCcEEEEeCCCCCCCCc-ceeeeeecccccceeEEEecCCCCcEEE
Q 012679 259 IVET-YR-GHNQEVCGLKWSA---SGQQLASGGNDNLLHIWDRSMASSNSV-TQWLHRLEEHTSAVKAIAWCPFQSNLLA 332 (458)
Q Consensus 259 ~~~~-~~-~h~~~v~~l~~sp---d~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~ll~ 332 (458)
.+.. +. .....|.++..-+ +..+++..+.+|.|+.-.+........ ......+... ..+..+........+++
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEE
Confidence 1100 11 1234455543333 578999999999999887654332111 1112233343 34444444444455555
Q ss_pred EeCCCCCCeEEEEECC--C---------CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc--------
Q 012679 333 TGGGGGDRCIKFWNTH--T---------GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-------- 393 (458)
Q Consensus 333 s~~g~~d~~i~lwd~~--~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-------- 393 (458)
.. ..|.+..+... . |.....+..+..|.++...+.+.+++.++ ..|.++.-.+...
T Consensus 163 ~T---~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T--~~G~~Krt~l~e~~~~~R~~~ 237 (327)
T 3uc1_A 163 VS---ANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVAT--SGGYAKRTAIEEYPVQGRGGK 237 (327)
T ss_dssp EE---TTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEE--TTSEEEEEEGGGSCBCCTTSC
T ss_pred EE---CCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEe--CCCcEEEEEHHHccccCcCCC
Confidence 44 67887777665 2 11222234456677777776666777754 6888877665322
Q ss_pred -eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 394 -VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 394 -~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
.....+..-.+.+..+....+...++..+.+|.+.-+++..-..
T Consensus 238 G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~ 282 (327)
T 3uc1_A 238 GVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRK 282 (327)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCB
T ss_pred cEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccc
Confidence 11122222133455554444455677778888888887754433
No 382
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=36.08 E-value=2.2e+02 Score=24.91 Aligned_cols=153 Identities=14% Similarity=0.063 Sum_probs=93.0
Q ss_pred CCccccceeeccC-CCeEEEEcCCEEEEEE---CCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeC
Q 012679 139 VDDYYLNLLDWGS-SNVLAIALGSTVYLWD---ASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDS 212 (458)
Q Consensus 139 ~~d~~~~~~~~~~-~~~la~~~d~~v~iwd---~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~ 212 (458)
..|.....+.-+. +.++..+..|.++--. +..+....+ +.. ...|..+.. + +..+++..+.+|.++-..+
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~~-~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL--KSR-EEKIVGAFI-REKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC--SST-TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEG
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc--CCC-CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEH
Confidence 4455555554443 6789999999887654 333322222 443 566777755 4 5679999999999999876
Q ss_pred CCce------eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC--------eeEEEEcccccceEeEEEc
Q 012679 213 TANR------QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD--------HIVETYRGHNQEVCGLKWS 276 (458)
Q Consensus 213 ~~~~------~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~--------~~~~~~~~h~~~v~~l~~s 276 (458)
..-. ....+. ....+..+.. ....++..+..|.+..+....-. ...-.+. ....|.++...
T Consensus 98 ~~~~~~~~G~~~i~lk--egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~ 174 (276)
T 3no0_A 98 AEFEYKAQGMPIIKLT--EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIW 174 (276)
T ss_dssp GGTTTCSTTEECSCCC--TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEE
T ss_pred HHhhhhcCCeEEEecC--CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEe
Confidence 5432 111222 2334444433 34678888999998887653211 0011122 23456666555
Q ss_pred CCCCEEEEEECCCcEEEEeCCC
Q 012679 277 ASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 277 pd~~~l~sg~~dg~i~iwd~~~ 298 (458)
+++..++..+..|.++...+..
T Consensus 175 ~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 175 NGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp SSCSEEEEEETTSCEEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEeEHHH
Confidence 6677888999999998887654
No 383
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=35.83 E-value=2.7e+02 Score=25.81 Aligned_cols=197 Identities=15% Similarity=0.118 Sum_probs=104.6
Q ss_pred ccceeeccCCCeEEEEcCC-EEEEEECCC-CC--------eeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEe
Q 012679 143 YLNLLDWGSSNVLAIALGS-TVYLWDASD-GT--------TSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~d~-~v~iwd~~~-~~--------~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd 211 (458)
.+..++......++...++ .|+.|-... ++ ......+. .....|..|+.. ..+.++-+.+|.|+.|-
T Consensus 69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG 146 (406)
T 4d9s_A 69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWG 146 (406)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEE
T ss_pred CEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeC
Confidence 4555666667777777775 999996432 11 11111111 123357777654 44566667899999996
Q ss_pred CCCce-----------eeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCe---------eE-EEEcc-cccc
Q 012679 212 STANR-----------QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDH---------IV-ETYRG-HNQE 269 (458)
Q Consensus 212 ~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~---------~~-~~~~~-h~~~ 269 (458)
....- ....+.......|..++......+.-..+|.|+.|-...... .. ..+.. ....
T Consensus 147 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~ 226 (406)
T 4d9s_A 147 RNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 226 (406)
T ss_dssp CCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCC
T ss_pred CCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCce
Confidence 43211 111222112346888888777777888999999996432211 01 11111 1234
Q ss_pred eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC------Ccceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeE
Q 012679 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSN------SVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCI 342 (458)
Q Consensus 270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i 342 (458)
|..++.. ..+.+.-..+|.|+.|-....... ....+ ..+.. ....|..++-.. ...++.. .||.|
T Consensus 227 i~~va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p-~~v~~~~~~~v~~i~~G~--~hs~alt---~~G~v 298 (406)
T 4d9s_A 227 MSMVACG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIP-HKLEALSNSFISQISGGW--RHTMALT---SDGKL 298 (406)
T ss_dssp EEEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEE-EECGGGTTSCEEEEEECS--SEEEEEE---TTSCE
T ss_pred EEEEEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCcccc-EEecccCCCCEEEEEecC--CEEEEEc---CCCeE
Confidence 5555543 344555678899999975443221 00111 11111 123466665543 2333332 78999
Q ss_pred EEEECCC
Q 012679 343 KFWNTHT 349 (458)
Q Consensus 343 ~lwd~~~ 349 (458)
+.|=...
T Consensus 299 ~~wG~n~ 305 (406)
T 4d9s_A 299 YGWGWNK 305 (406)
T ss_dssp EEEECCT
T ss_pred EEeeCCC
Confidence 9996543
No 384
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=29.70 E-value=4.8e+02 Score=26.82 Aligned_cols=155 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred ccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc------cccceeEEEecCCCCcEEEEeCCCCC
Q 012679 267 NQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE------HTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 267 ~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
.+.|.+|.++| +...+..++..+.|...+-....- ...... ....|.+|+++|.....+..+. .+
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW------~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~--g~ 85 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKW------IPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ--GR 85 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEE------EESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE--CS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCe------eECccCCCcccccCCceeEEEECCCCCCEEEEEe--Cc
Q ss_pred Ce----EEEEECCCCCeeEEEeCCC-----------CeEEEEEcCCCCeEEEEecCCCCcEEEEeC-CCceeeEEEe---
Q 012679 340 RC----IKFWNTHTGACLNSVDTGS-----------QVCALLWNKNERELLSSHGFTQNQLTLWKY-PSMVKMAELS--- 400 (458)
Q Consensus 340 ~~----i~lwd~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~-~~~~~~~~~~--- 400 (458)
.. -.||-...+-.-....... .+..++++|.....+.+.....+..+--|- .+.+.+..+.
T Consensus 86 ~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~ 165 (789)
T 1sqj_A 86 YVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAF 165 (789)
T ss_dssp CTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCC
T ss_pred cCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCcccc
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCC-CcEEE
Q 012679 401 GHTSRVLFMAQSP-DGCTVASAAAD-ETLRF 429 (458)
Q Consensus 401 ~h~~~V~~l~~sp-dg~~l~s~s~D-g~i~i 429 (458)
.....+..+.++| ++..|+.+..+ +.|..
T Consensus 166 ~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~ 196 (789)
T 1sqj_A 166 TNGIGYTSVIFDPERNGTIYASATAPQGMYV 196 (789)
T ss_dssp STTTCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred CCCCCeEEEEECCCCCCEEEEEEcCCCeEEE
No 385
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=28.99 E-value=3.4e+02 Score=24.95 Aligned_cols=237 Identities=10% Similarity=-0.017 Sum_probs=119.2
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCC-------ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEE---ccCCC-
Q 012679 191 WAPDGRHIAIGLNNCQVQLWDSTA-------NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINND---VRVRD- 257 (458)
Q Consensus 191 ~s~~g~~la~g~~dg~v~iwd~~~-------~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd---~~~~~- 257 (458)
+-|+..++++.+.+|.|+--.+.. ++-+..+.......+..+.. ....|+..+..|.++-+. +....
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 356788999999999998765422 11122222213444444433 346677778888776554 32211
Q ss_pred -----eeEE--EEcccccceEeEEEcC---CCCEEEEEECCCcEEEEeCCCCCCCC-cceeeeeecccccceeEEEecCC
Q 012679 258 -----HIVE--TYRGHNQEVCGLKWSA---SGQQLASGGNDNLLHIWDRSMASSNS-VTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 258 -----~~~~--~~~~h~~~v~~l~~sp---d~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
.... .+. ....|.++..-. ++.+|+.++..|.++...+....... .......+.. ...+..+.....
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 1111 112 234455544332 45689999999999988754432211 0111223333 334444444433
Q ss_pred CCcEEEEeCCCCCCeEEEEECCC---------CCeeEEEeCCCCeEEEEEcC----------------------------
Q 012679 327 QSNLLATGGGGGDRCIKFWNTHT---------GACLNSVDTGSQVCALLWNK---------------------------- 369 (458)
Q Consensus 327 ~~~ll~s~~g~~d~~i~lwd~~~---------~~~~~~~~~~~~v~~~~~s~---------------------------- 369 (458)
...+++.. .+|.+..++... |.....+..+..|.++...+
T Consensus 161 ~~~i~l~T---~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~ 237 (370)
T 3l6v_A 161 DRDVLLFA---SNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAV 237 (370)
T ss_dssp CCEEEEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC--------------------------
T ss_pred CceEEEEe---CCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccc
Confidence 44555544 577766665432 11222233345565555444
Q ss_pred -------CCCeEEEEecCCCCcEEEEeCCCc---------eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 370 -------NERELLSSHGFTQNQLTLWKYPSM---------VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 370 -------~~~~l~~~~g~~d~~i~iwd~~~~---------~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
.+..+++.+ ..|..+...+... -....+....+.+..+.+..+...|+..+..|.+.-..+.
T Consensus 238 ~~~~~~~~~~~il~vT--e~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 238 IDVADNGDVAYILTAT--ENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp ---------CEEEEEE--TTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred cccccccCCceEEEee--CCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 334566643 6777776654321 1111222223455554443444455556777776666654
Q ss_pred C
Q 012679 434 G 434 (458)
Q Consensus 434 ~ 434 (458)
.
T Consensus 316 ~ 316 (370)
T 3l6v_A 316 E 316 (370)
T ss_dssp G
T ss_pred h
Confidence 3
No 386
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=28.68 E-value=3.1e+02 Score=24.35 Aligned_cols=238 Identities=8% Similarity=0.017 Sum_probs=120.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCceeeE-------EecCCCcccEEEEE-e-CCCeEEEEeCCCcEEEEEc---cCCC---
Q 012679 193 PDGRHIAIGLNNCQVQLWDSTANRQLR-------TLRGGHRSRVGSLA-W-NNHILTTGGMDGLIINNDV---RVRD--- 257 (458)
Q Consensus 193 ~~g~~la~g~~dg~v~iwd~~~~~~~~-------~~~~~~~~~v~~l~-~-~~~~l~sg~~dg~i~vwd~---~~~~--- 257 (458)
|+..++++.+.+|.|+--.+..-+..+ .+.......+..+. - ....|+..+..|.++-... ....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 345678888899988876654322111 11110222332222 2 4567777788887665543 2221
Q ss_pred --eeE-EEEc-ccccceEeEEEc---CCCCEEEEEECCCcEEEEeCCCCCCCC-cceeeeeecccccceeEEEecCCCCc
Q 012679 258 --HIV-ETYR-GHNQEVCGLKWS---ASGQQLASGGNDNLLHIWDRSMASSNS-VTQWLHRLEEHTSAVKAIAWCPFQSN 329 (458)
Q Consensus 258 --~~~-~~~~-~h~~~v~~l~~s---pd~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~ 329 (458)
..+ ..+. .....|.++..- .++.+++..+..|.++...+....... .......+..+ ..+..+........
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 100 0111 223345555432 356789999999999988764322211 01112233344 44444444443445
Q ss_pred EEEEeCCCCCCeEEEEECCC---------CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-------
Q 012679 330 LLATGGGGGDRCIKFWNTHT---------GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM------- 393 (458)
Q Consensus 330 ll~s~~g~~d~~i~lwd~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~------- 393 (458)
+++.. .+|.+..++... |.....+..+..|.++....++..+++.+ ..|.++-.++...
T Consensus 160 i~l~T---~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T--~~G~~Kr~~~~e~~~~~Rg~ 234 (307)
T 1zi0_A 160 VMLFS---AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTAT--QNGYGKRTAVAEYPTKSRAT 234 (307)
T ss_dssp EEEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEE--TTSEEEEECGGGSCCCCTTS
T ss_pred EEEEC---CCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEE--cCCceEEEEHHHhccCCCCC
Confidence 55544 677777776532 11222333455677776555556666643 6777777665221
Q ss_pred --eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 394 --VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 394 --~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
.....+..-.+.+..+....+...|+..+.+|.+.-.++..-.
T Consensus 235 kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i~ 279 (307)
T 1zi0_A 235 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEIS 279 (307)
T ss_dssp CCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGSC
T ss_pred CCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccccc
Confidence 1122233233555555444444556677888888777776543
No 387
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=27.48 E-value=3.4e+02 Score=24.38 Aligned_cols=236 Identities=8% Similarity=0.004 Sum_probs=119.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCce----eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc---cCCC-----e
Q 012679 193 PDGRHIAIGLNNCQVQLWDSTANR----QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV---RVRD-----H 258 (458)
Q Consensus 193 ~~g~~la~g~~dg~v~iwd~~~~~----~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~---~~~~-----~ 258 (458)
|+..++++.+.+|.|+--.+..-+ .-..+. ....+..+.. ....|+..+..|.++-... .... .
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk--e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK--DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC--TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC--CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 566778889999998876543211 111122 2233333222 4577888888888765543 2211 1
Q ss_pred eE-EEEc-ccccceEeE-EEcC--CCCEEEEEECCCcEEEEeCCCCCCCC--cceeeeeecccccceeEEEecCCCCcEE
Q 012679 259 IV-ETYR-GHNQEVCGL-KWSA--SGQQLASGGNDNLLHIWDRSMASSNS--VTQWLHRLEEHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 259 ~~-~~~~-~h~~~v~~l-~~sp--d~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~p~~~~ll 331 (458)
.+ ..+. .....|.++ .... ++.+++.++.+|.++...+....... .......+... ..+..+........++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 00 1111 122345554 3332 36789999999999988765332211 01111223332 4444444444344555
Q ss_pred EEeCCCCCCeEEEEECCC---------CCeeEEEeCCCCeEEEEEcCCCC-eEEEEecCCCCcEEEEeCCC-------ce
Q 012679 332 ATGGGGGDRCIKFWNTHT---------GACLNSVDTGSQVCALLWNKNER-ELLSSHGFTQNQLTLWKYPS-------MV 394 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~---------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~g~~d~~i~iwd~~~-------~~ 394 (458)
+.. .+|.+..++... |.....+..+..|.++...+++. .+++.+ ..|..+..++.. ++
T Consensus 160 l~T---~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt--~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 160 LVT---HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVAT--QRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp EEE---TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEE--TTSEEEEEEGGGSCCCCTTSC
T ss_pred EEe---CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEE--CCCceEEEEHHHccccCCCCC
Confidence 544 678877776532 11222233445566665544444 566644 566666655532 11
Q ss_pred eeEE---EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 395 KMAE---LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 395 ~~~~---~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
-+.. ++.....+..+....++..++..+..|.+.-.++..-.
T Consensus 235 Gv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i~ 279 (323)
T 1wp5_A 235 GVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIR 279 (323)
T ss_dssp CEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGSC
T ss_pred CEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhcC
Confidence 1221 22222245443333334556677788887777776543
No 388
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=25.00 E-value=3.7e+02 Score=23.94 Aligned_cols=236 Identities=8% Similarity=0.003 Sum_probs=120.4
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCcee-------eEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCee---
Q 012679 192 APDGRHIAIGLNNCQVQLWDSTANRQ-------LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHI--- 259 (458)
Q Consensus 192 s~~g~~la~g~~dg~v~iwd~~~~~~-------~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~--- 259 (458)
-++..++++.+.+|.|+--.+..-+. +..+.......+..+.. ....++..+..|.++-.....-...
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 35667888899999998876543321 11111112233333332 4577888888898776654321100
Q ss_pred --------EEEEcccccceEeEEEcC---CCCEEEEEECCCcEEEEeCCCCCCCC-cceeeeeecccccceeEEEecCCC
Q 012679 260 --------VETYRGHNQEVCGLKWSA---SGQQLASGGNDNLLHIWDRSMASSNS-VTQWLHRLEEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 260 --------~~~~~~h~~~v~~l~~sp---d~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~ 327 (458)
.-.+.. ...|.++...+ ++.+|+..+..|.++...+....... .......+.. ...+..+.....+
T Consensus 85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 001111 23344443332 46788889999999988765432211 1111223443 3445555444334
Q ss_pred CcEEEEeCCCCCCeEEEEECCC---------CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-----
Q 012679 328 SNLLATGGGGGDRCIKFWNTHT---------GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----- 393 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----- 393 (458)
..+++.. .+|.+..+.... |.....+..+..+..+..-.++..+++.+ ..|......+...
T Consensus 163 ~~i~l~T---~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt--~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 163 EKVICLS---KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVS--ENGYGKRLNMSKISELKR 237 (312)
T ss_dssp CEEEEEE---TTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEE--TTSEEEEEEGGGSCBCCT
T ss_pred CEEEEEe---CCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEE--CCCceEEEEHHHhcccCC
Confidence 4455443 688888777643 11222333455677776655566666644 6777877776322
Q ss_pred ----eeeEEEe-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 394 ----VKMAELS-GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 394 ----~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
..+..+. .....+..+....+...+...+..|.+.-..+..
T Consensus 238 ~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 238 GATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp TCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred CCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 1222222 2234444433333445556666777554445543
No 389
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=23.83 E-value=4.7e+02 Score=24.75 Aligned_cols=191 Identities=12% Similarity=0.083 Sum_probs=98.4
Q ss_pred ccEEEEEeCCCeEEEEeCCCcEEEEEcc--CCCe-----------e-EEEEcc-cccceEeEEEcCCCCEEEEEECCCcE
Q 012679 227 SRVGSLAWNNHILTTGGMDGLIINNDVR--VRDH-----------I-VETYRG-HNQEVCGLKWSASGQQLASGGNDNLL 291 (458)
Q Consensus 227 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~--~~~~-----------~-~~~~~~-h~~~v~~l~~spd~~~l~sg~~dg~i 291 (458)
..|..++......+.-..+|.|+.|-.. .... . ...+.. ....|..++.. ..+.+.-..+|.|
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G~v 225 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEGMV 225 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTSCE
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCCeE
Confidence 5688888877777777889999999751 1000 0 011111 11236666543 4456666789999
Q ss_pred EEEeCCCCCCCC----------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-CC---------
Q 012679 292 HIWDRSMASSNS----------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-GA--------- 351 (458)
Q Consensus 292 ~iwd~~~~~~~~----------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~--------- 351 (458)
+.|-........ ...+ ..+ ....|..|+-.. ...++.. .+|.|+.|=... |+
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p-~~~--~~~~v~~Ia~G~--~hs~alt---~~G~v~~wG~n~~GqlG~~~~~~~ 297 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDP-RPF--GLRHVKYIASGE--NHCFALT---KDNKLVSWGLNQFGQCGVSEDVED 297 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSC-EEC--SCCSEEEEEECS--SEEEEEE---TTSCEEEEEECTTSTTCCCSCCCT
T ss_pred EEEeCCCCCCCCCCccccccccccCc-eec--CCcceEEEecCC--CeEEEEe---cCCCEEEeCCCCCCCcCCCCcccC
Confidence 999755432110 0000 011 113566666543 2333333 689999995432 11
Q ss_pred --eeEE---EeC--CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee-------------------------eEEE
Q 012679 352 --CLNS---VDT--GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK-------------------------MAEL 399 (458)
Q Consensus 352 --~~~~---~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~-------------------------~~~~ 399 (458)
.... +.. ...|..++.......+++ .+|.|+.|-....-+ ...+
T Consensus 298 ~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt----~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v 373 (473)
T 3of7_A 298 GALVTKPKRLALPDNVVIRSIAAGEHHSLILS----QDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKL 373 (473)
T ss_dssp TCEEEEEEECCCCTTCCEEEEEECSSEEEEEE----TTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEEC
T ss_pred CceeeccccccccCCccEEEEEeCCCeEEEEe----CCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCccc
Confidence 1111 111 234555555433333332 578888886432110 0111
Q ss_pred eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 400 SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 400 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
.+ ...|..|+.... ..+.-..||.|..|=...
T Consensus 374 ~~-~~~v~~Ia~G~~--hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 374 NN-VPKFKSVAAGSH--HSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp CS-SCCEEEEEECSS--EEEEEETTSCEEEEECCT
T ss_pred CC-CCceEEEEeCCC--eEEEEeCCCcEEEeeCCC
Confidence 11 125777776543 444557899999997654
Done!