BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012680
(458 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic
OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
Length = 564
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/458 (87%), Positives = 438/458 (95%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
MRDIRRALLEADVSLPVVRRFVQ+VS+QAVG+G+IRGV+PDQQLVKIV DELVKLMGGEV
Sbjct: 107 MRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEV 166
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
SEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAIDQLVIL
Sbjct: 167 SELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVIL 226
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
GEQVGVPVYTAGT+VKP+ IAKQGL+EAKK NVDVVI+DTAGRLQIDK MMDELKDVK+
Sbjct: 227 GEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKF 286
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVSGKPIK
Sbjct: 287 LNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 346
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 300
LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA FDFN
Sbjct: 347 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFN 406
Query: 301 DFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPEL 360
DFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEERE+PEL
Sbjct: 407 DFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPEL 466
Query: 361 LAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKS 420
LAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LEDALK+
Sbjct: 467 LAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKA 526
Query: 421 EQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 458
EQKAPPGTARRKR+++SR++FV+ AS++P PRGFG G+
Sbjct: 527 EQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 464 bits (1195), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/394 (57%), Positives = 301/394 (76%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++++RRALL ADV+L VV+ F++ V ++A+G +I GV P QQ +KIV DELV LMG
Sbjct: 31 LQEVRRALLAADVNLQVVKGFIKDVEQKALGADVISGVNPGQQFIKIVYDELVNLMGESN 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
L A+ PTVIL+AGLQG GKTT +AKLA YL+KQ +S ++VA DVYRPAAIDQL L
Sbjct: 91 VPLAQAEQAPTVILMAGLQGTGKTTATAKLALYLRKQKRSALMVATDVYRPAAIDQLKTL 150
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
G+Q+ VPV+ G++ P +IA+QG+E+AK+ VD V++DTAGRLQID MM EL ++K+V
Sbjct: 151 GQQIDVPVFDLGSDANPVEIARQGVEKAKELGVDTVLIDTAGRLQIDPQMMAELAEIKQV 210
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
+ P + LLVVDAMTGQEAA L TF+ +IGITGAILTKLDGD+RGGAALSV+++SG+PIK
Sbjct: 211 VKPDDTLLVVDAMTGQEAANLTHTFHEQIGITGAILTKLDGDTRGGAALSVRQISGQPIK 270
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 300
VG GE++E L+PFYPDR+A RIL MGDVL+ VEKAQE + D E++Q KI+ A FDF+
Sbjct: 271 FVGVGEKVEALQPFYPDRLASRILNMGDVLTLVEKAQEAIDVGDVEKLQNKILEATFDFD 330
Query: 301 DFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPEL 360
DF+KQ R + MGS+ ++ MIPGM K++ + + EK LK EAMI +MT EER+ P+L
Sbjct: 331 DFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISSMTTEERKNPDL 390
Query: 361 LAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRV 394
LA+SP RR+R+AQ SG +E VS+L+ +MR
Sbjct: 391 LAKSPSRRRRIAQGSGHSETDVSKLITNFTKMRT 424
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 460 bits (1184), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/380 (59%), Positives = 298/380 (78%), Gaps = 1/380 (0%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++++RRALLEADV+L VV+ F+ V E+AVG +I G+RPDQQ +K+V DELV++MG
Sbjct: 31 LKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVVYDELVQVMGETH 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
L A PTVIL+AGLQG GKTT +AKLA +L+K+G+S +LVA DVYRPAAIDQL+ L
Sbjct: 91 VPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRSTLLVATDVYRPAAIDQLITL 150
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
G+Q+ VPV+ G++ P +IA+QG+E+A+++ +D VIVDTAGRLQID MM+EL VK
Sbjct: 151 GKQIDVPVFELGSDANPVEIARQGVEKARQEGIDTVIVDTAGRLQIDTEMMEELAQVKEA 210
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
+ P EVLLVVD+M GQEAA+L +F+ IGITGAILTKLDGDSRGGAALS++ VSG+PIK
Sbjct: 211 IAPHEVLLVVDSMIGQEAASLTRSFHERIGITGAILTKLDGDSRGGAALSIRRVSGQPIK 270
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 300
VG GE++E L+PF+P+RMA RILGMGDVL+ VEKAQE + D E+MQ+KI++A FDF
Sbjct: 271 FVGLGEKVEALQPFHPERMASRILGMGDVLTLVEKAQEEIDLADVEKMQEKILAAKFDFT 330
Query: 301 DFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIEAMTPEEREKPE 359
DFLKQ R + MGS++ I +IPG+ GKI Q+R+ E+ LK +EAMI +MTP+ER P+
Sbjct: 331 DFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINSMTPQERRDPD 390
Query: 360 LLAESPVRRKRVAQDSGKTE 379
LL+ SP RR R+A+ G+TE
Sbjct: 391 LLSNSPSRRHRIAKGCGQTE 410
>sp|P37105|SRP54_BACSU Signal recognition particle protein OS=Bacillus subtilis (strain
168) GN=ffh PE=1 SV=1
Length = 446
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/407 (49%), Positives = 301/407 (73%), Gaps = 4/407 (0%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
MR++R ALLEADV+ VV+ FV+ VSE+AVG +++ + P QQ++K+V++EL +LMGGE
Sbjct: 32 MREVRLALLEADVNFKVVKDFVKKVSERAVGQDVMKSLTPGQQVIKVVQEELTELMGGEE 91
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVI 119
S++ AK PTVI++ GLQG GKTT S KLAN L KK + MLVA D+YRPAAI QL
Sbjct: 92 SKIAVAKRPPTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLET 151
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
LG+Q+ +PV++ G +V P +IAKQ +E+AK+++ D VI+DTAGRL ID +MDEL +VK
Sbjct: 152 LGKQLDMPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKE 211
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
+ NP E+ LVVD+MTGQ+A + +FN ++G+TG +LTKLDGD+RGGAALS++ V+ PI
Sbjct: 212 IANPEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPI 271
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDF 299
K G GE+++ LEPF+P+RMA RILGMGDVL+ +EKAQ + ++ A+E+++K+ + +F
Sbjct: 272 KFAGLGEKLDALEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRTMSFTL 331
Query: 300 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKP 358
+DFL+Q V MG + ++ M+PG GK+ + ++ EK L +EA+I++MT E+E+P
Sbjct: 332 DDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQP 391
Query: 359 ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 405
+++ S RRKR+A+ SG + Q+V++L+ Q +M+ MK + + +G
Sbjct: 392 DIINAS--RRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQMTNMSKG 436
>sp|Q54431|SRP54_STRMU Signal recognition particle protein OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ffh PE=3 SV=3
Length = 516
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/407 (48%), Positives = 284/407 (69%), Gaps = 9/407 (2%)
Query: 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS 61
++IR ALLEADV+LPVV+ F++ V ++AVG +I + P QQ++KIV +EL ++G E +
Sbjct: 33 KEIRLALLEADVALPVVKEFIKRVRKRAVGHEVIDTLDPSQQIIKIVNEELTAVLGSETA 92
Query: 62 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVIL 120
E+ + PT+I++ GLQG GKTT + KLAN L K++ +++A D+YRPAAIDQL L
Sbjct: 93 EIEKSSKIPTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTL 152
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
G+Q+ VPV+ GTE +I QGL +AK+ D V++DTAGRLQID+ +M EL+D+K +
Sbjct: 153 GQQINVPVFDMGTEHSAVEIVSQGLAQAKENRNDYVLIDTAGRLQIDEKLMTELRDIKAL 212
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
NP E+LLVVD+M GQEAA + FN ++ +TG ILTK+DGD+RGGAALSV++++GKPIK
Sbjct: 213 ANPNEILLVVDSMIGQEAANVAREFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 300
G GE++ D+E F+PDRM+ RILGMGD+L+ +EKA + ++ + E+ +K+ +FDFN
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGDLLTLIEKASQDYDEQKSAELAEKMRENSFDFN 332
Query: 301 DFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMTPEEREKP 358
DF++Q V MGSM ++ MIPGM P A V+ E + A++ +MTPEERE P
Sbjct: 333 DFIEQLDQVQNMGSMEDILKMIPGMAN-NPALANVKVDEGEIARKRAIVSSMTPEERENP 391
Query: 359 ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 405
+LL +P RR+R+A SG T V++ + Q + K + GVM G
Sbjct: 392 DLL--TPSRRRRIASGSGNTFVNVNKFIKDFNQAK---KMMQGVMSG 433
>sp|P0AGD7|SRP54_ECOLI Signal recognition particle protein OS=Escherichia coli (strain
K12) GN=ffh PE=1 SV=1
Length = 453
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/397 (49%), Positives = 268/397 (67%), Gaps = 7/397 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+R++R ALLEADV+LPVVR F+ V E+AVG + + + P Q+ VKIVR+ELV MG E
Sbjct: 31 LREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEEN 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVI 119
L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI QL
Sbjct: 91 QTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLET 150
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
L EQVGV + + KP I L+EAK K DV++VDTAGRL +D+AMMDE+K V
Sbjct: 151 LAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHA 210
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
+NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ ++GKPI
Sbjct: 211 SINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FD 298
K +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+ + FD
Sbjct: 271 KFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFD 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEERE 356
NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT +ER
Sbjct: 331 LNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERA 389
Query: 357 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 393
KPE++ S R++R+A G Q V++L+ Q M+
Sbjct: 390 KPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424
>sp|P0AGD8|SRP54_ECOL6 Signal recognition particle protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ffh PE=3 SV=1
Length = 453
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/397 (49%), Positives = 268/397 (67%), Gaps = 7/397 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+R++R ALLEADV+LPVVR F+ V E+AVG + + + P Q+ VKIVR+ELV MG E
Sbjct: 31 LREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEEN 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVI 119
L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI QL
Sbjct: 91 QTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLET 150
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
L EQVGV + + KP I L+EAK K DV++VDTAGRL +D+AMMDE+K V
Sbjct: 151 LAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHA 210
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
+NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ ++GKPI
Sbjct: 211 SINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FD 298
K +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+ + FD
Sbjct: 271 KFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFD 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEERE 356
NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT +ER
Sbjct: 331 LNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERA 389
Query: 357 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 393
KPE++ S R++R+A G Q V++L+ Q M+
Sbjct: 390 KPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424
>sp|P0AGD9|SRP54_ECO57 Signal recognition particle protein OS=Escherichia coli O157:H7
GN=ffh PE=3 SV=1
Length = 453
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/397 (49%), Positives = 268/397 (67%), Gaps = 7/397 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+R++R ALLEADV+LPVVR F+ V E+AVG + + + P Q+ VKIVR+ELV MG E
Sbjct: 31 LREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEEN 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVI 119
L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI QL
Sbjct: 91 QTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLET 150
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
L EQVGV + + KP I L+EAK K DV++VDTAGRL +D+AMMDE+K V
Sbjct: 151 LAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHA 210
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
+NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ ++GKPI
Sbjct: 211 SINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FD 298
K +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+ + FD
Sbjct: 271 KFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFD 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEERE 356
NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT +ER
Sbjct: 331 LNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERA 389
Query: 357 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 393
KPE++ S R++R+A G Q V++L+ Q M+
Sbjct: 390 KPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424
>sp|O33013|SRP54_MYCLE Signal recognition particle protein OS=Mycobacterium leprae (strain
TN) GN=ffh PE=3 SV=1
Length = 521
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/409 (47%), Positives = 272/409 (66%), Gaps = 9/409 (2%)
Query: 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS 61
R+IR AL EADVSLPVVR FV + E+A G + + P QQ+VKIV +EL+ ++GGE
Sbjct: 32 REIRLALFEADVSLPVVRAFVHRIKERARGTEVSAALNPAQQIVKIVNEELIGILGGETR 91
Query: 62 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG 121
+L FAK+ PTV++LAGLQG GKTT++ KLA L++QG + +LVA D+ RPAA++QL ++G
Sbjct: 92 QLAFAKTPPTVVMLAGLQGSGKTTLAGKLAVRLRRQGHTPLLVACDLQRPAAVNQLQVVG 151
Query: 122 EQVGVPVYTAGTEVKPSQ-------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 174
E+ GVPV+ P +A GL EA+ K+ DVVIVDTAGRL ID +M +
Sbjct: 152 ERAGVPVFAPHPGASPDSGPGDPVAVASAGLVEARAKHFDVVIVDTAGRLGIDDELMAQA 211
Query: 175 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 234
++ +NP EVL V+DAM GQ+A F +G TG +LTKLDGD+RGGAALSV+EV
Sbjct: 212 GAIREAINPDEVLFVLDAMIGQDAVTTAAAFGAGVGFTGVVLTKLDGDARGGAALSVREV 271
Query: 235 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 294
+G PI GE+++D + F+PDRMA RILGMGDVLS +E+A++V E AE KI++
Sbjct: 272 TGVPILFATTGEKLDDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAEQAEAAAAKIVA 331
Query: 295 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEE 354
DFL+Q V +MG + ++GM+PG G++ + +K L ++A+I MTP+E
Sbjct: 332 GELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIRGMTPQE 391
Query: 355 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 403
R P+++ S RR R+A SG T +V+QLV + F+ R M +++G M
Sbjct: 392 RADPKIINAS--RRLRIANGSGVTVSEVNQLVDRFFEARKMMSSVLGGM 438
>sp|P66844|SRP54_MYCTU Signal recognition particle protein OS=Mycobacterium tuberculosis
GN=ffh PE=1 SV=1
Length = 525
Score = 353 bits (907), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 196/409 (47%), Positives = 271/409 (66%), Gaps = 9/409 (2%)
Query: 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS 61
R+IR ALLEADVSLPVVR F+ + E+A G + + P QQ+VKIV +EL+ ++GGE
Sbjct: 32 REIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETR 91
Query: 62 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG 121
EL FAK+ PTV++LAGLQG GKTT++ KLA L+ QG + +LVA D+ RPAA++QL ++G
Sbjct: 92 ELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVG 151
Query: 122 EQVGVPVYTAGTEVKPSQ-------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 174
E+ GVPV+ P +A GL EA+ K+ DVVIVDTAGRL ID+ +M +
Sbjct: 152 ERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDEELMAQA 211
Query: 175 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 234
++ +NP EVL V+DAM GQ+A F +G TG LTKLDGD+RGGAALSV+EV
Sbjct: 212 AAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREV 271
Query: 235 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 294
+G PI GE++ED + F+PDRMA RILGMGDVLS +E+A++V + AEE KI +
Sbjct: 272 TGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGA 331
Query: 295 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEE 354
DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I MTP+E
Sbjct: 332 GELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQE 391
Query: 355 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 403
R P+++ S RR R+A SG T +V+QLV + F+ R M +++G M
Sbjct: 392 RADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438
>sp|P66845|SRP54_MYCBO Signal recognition particle protein OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=ffh PE=3 SV=1
Length = 525
Score = 353 bits (907), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 196/409 (47%), Positives = 271/409 (66%), Gaps = 9/409 (2%)
Query: 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS 61
R+IR ALLEADVSLPVVR F+ + E+A G + + P QQ+VKIV +EL+ ++GGE
Sbjct: 32 REIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETR 91
Query: 62 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG 121
EL FAK+ PTV++LAGLQG GKTT++ KLA L+ QG + +LVA D+ RPAA++QL ++G
Sbjct: 92 ELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVG 151
Query: 122 EQVGVPVYTAGTEVKPSQ-------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 174
E+ GVPV+ P +A GL EA+ K+ DVVIVDTAGRL ID+ +M +
Sbjct: 152 ERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDEELMAQA 211
Query: 175 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 234
++ +NP EVL V+DAM GQ+A F +G TG LTKLDGD+RGGAALSV+EV
Sbjct: 212 AAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREV 271
Query: 235 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 294
+G PI GE++ED + F+PDRMA RILGMGDVLS +E+A++V + AEE KI +
Sbjct: 272 TGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGA 331
Query: 295 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEE 354
DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I MTP+E
Sbjct: 332 GELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQE 391
Query: 355 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 403
R P+++ S RR R+A SG T +V+QLV + F+ R M +++G M
Sbjct: 392 RADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438
>sp|Q92J55|SRP54_RICCN Signal recognition particle protein OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=ffh PE=3 SV=1
Length = 449
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 184/402 (45%), Positives = 268/402 (66%), Gaps = 8/402 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
MRDIR ALLE+DV+LPV++ F+ V ++A+G +I+ V P Q ++KI+ +E++ L+
Sbjct: 31 MRDIRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASSK 90
Query: 61 SE--LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 118
SE L P L+ GLQG GKTT S+KLA L+ Q K +LV+ D YRPAA +QL
Sbjct: 91 SETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLDTYRPAAQEQLA 150
Query: 119 ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 178
IL V + KP I K+ + EAK DVVI DTAGR QIDKAMM+E +K
Sbjct: 151 ILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQIDKAMMEEALAIK 210
Query: 179 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238
+++ PTE LLV+D+MTGQ+A ++FN ++ I+G IL+++DGDS+GGAALSVK ++ KP
Sbjct: 211 KIVEPTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKP 270
Query: 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD 298
IK + GE + DLE F +R+A RIL MGD++SFVEKA ++ +E+AE+ K+ FD
Sbjct: 271 IKFLSSGENLIDLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFD 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEER 355
ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MTP+ER
Sbjct: 331 LNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKER 389
Query: 356 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 397
+ P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 390 KNPDIINAS--RRKRIAVGAGTTVQKVNILLKQYKQISEIMK 429
>sp|Q4UKH4|SRP54_RICFE Signal recognition particle protein OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=ffh PE=3 SV=2
Length = 449
Score = 341 bits (875), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 183/402 (45%), Positives = 265/402 (65%), Gaps = 8/402 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
MRDIR ALLE+DV+LPV++ F+ V ++A+G +I+ V P Q ++KI+ +E++ L+
Sbjct: 31 MRDIRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASSE 90
Query: 61 SE--LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 118
SE L P L+ GLQG GKTT S+KLA LK Q K +LV+ D YRPAA +QL
Sbjct: 91 SETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLKNQNKKVLLVSLDTYRPAAQEQLA 150
Query: 119 ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 178
IL V + KP I K+ + EAK VVI DTAGR QIDK MM+E +K
Sbjct: 151 ILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYGVVIYDTAGRTQIDKEMMEEALAIK 210
Query: 179 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238
+++ PTE LLV+D+MTGQ+A +FN ++ I+G IL+++DGDS+GGAALSVK ++ KP
Sbjct: 211 KIVEPTETLLVIDSMTGQDAVVTANSFNEKLEISGLILSRIDGDSKGGAALSVKYITKKP 270
Query: 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD 298
IK + GE++ DLE F +R+A RIL MGD++SFVEKA ++ +E+AE+ K+ FD
Sbjct: 271 IKFLSSGEKLTDLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFD 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEER 355
ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MT +ER
Sbjct: 331 LNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTLKER 389
Query: 356 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 397
E P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 390 ENPDIINAS--RRKRIAAGAGTTVQKVNILLKQYKQISEMMK 429
>sp|O67615|SRP54_AQUAE Signal recognition particle protein OS=Aquifex aeolicus (strain
VF5) GN=ffh PE=3 SV=1
Length = 454
Score = 338 bits (867), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 179/416 (43%), Positives = 275/416 (66%), Gaps = 15/416 (3%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+R+IR ALLEADV V + F++ + E+ VG + + + P + ++K V +ELV ++GGE
Sbjct: 31 LREIRLALLEADVDYQVAKDFIKRIREKVVGKEVPKNLSPAEFVIKTVYEELVDILGGEK 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
++L + +L GLQG GKTT K+AN LKK G + + D+ RPAA+ QL L
Sbjct: 91 ADL-----KKGTVLFVGLQGTGKTTTIGKIANLLKKGGHKVAVSSTDLRRPAAMLQLQRL 145
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
E+VGVP Y + +IA++ ++ AK+++VD +++DTAGRL +D+ +M EL+++K V
Sbjct: 146 AERVGVPYYEFEEGLGAVEIARRAVKRAKEESVDYLLLDTAGRLHVDEELMKELQEIKEV 205
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
NP+E+L V DAM GQ A TF+ +G+TG ++TK+DGD+RGG ALSVKEV G PIK
Sbjct: 206 TNPSEILYVADAMQGQTALETAKTFHERLGLTGVVITKMDGDARGGLALSVKEVLGVPIK 265
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 300
+G GE++ED+EPFYPDR+A RILG+GD+ S VEKAQEV+ ++ A+ M K+M+ FD
Sbjct: 266 FIGVGEKIEDIEPFYPDRIAQRILGLGDIQSLVEKAQEVITEDKAQVMATKVMTGEFDLE 325
Query: 301 DFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMTPEEREKP 358
D + R + +MG + +++ MIPG + P ++ EK K +EA+I +MTPEER P
Sbjct: 326 DLREMLRMIQQMGPLDKLLSMIPG---VAPQLKHLKVDEKQFKKIEAIINSMTPEERRNP 382
Query: 359 ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNL 414
+++ S R+KR+A+ SG T V++L+ + +M+ M+ L + G +PA+ +
Sbjct: 383 KIINMS--RKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKL---QKAGGMPAIPKM 433
>sp|Q9ZDZ0|SRP54_RICPR Signal recognition particle protein OS=Rickettsia prowazekii
(strain Madrid E) GN=ffh PE=3 SV=1
Length = 449
Score = 337 bits (863), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 268/402 (66%), Gaps = 8/402 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGG-- 58
MRD+R ALLE+DV+LPV++ F++ V ++A+G +I+ V P Q ++KI+ +E++ L+
Sbjct: 31 MRDVRVALLESDVALPVIKGFIEEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASTE 90
Query: 59 EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 118
++L P +L+ GLQG GKTT S KLA LK Q K +LV+ D YRPAA +QL
Sbjct: 91 STTKLNLNAKPPVNLLIVGLQGGGKTTASGKLALRLKNQNKKVLLVSLDTYRPAAQEQLA 150
Query: 119 ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 178
I+ V + KP I K+ + EA+ DVVI DTAGR+QID MM+E +K
Sbjct: 151 IIANSVNIDSLPIVKGEKPLDIVKRAIGEAQISAYDVVIYDTAGRIQIDNVMMEEALAIK 210
Query: 179 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238
++LNPTE LLV+D+MTGQ+A TF+ ++ I+G IL+++DGD++GGAALSVK + KP
Sbjct: 211 KILNPTETLLVIDSMTGQDAVITAKTFSEKLEISGLILSRIDGDTKGGAALSVKYFTQKP 270
Query: 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD 298
IK + GE++ DLE F +R+A RIL MGD++SFV+KA ++ +E+AE+ K+ S FD
Sbjct: 271 IKFLSSGEKLTDLEEFNAERLASRILDMGDIISFVKKAASIVDREEAEKTAIKLKSGKFD 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEER 355
ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MT +ER
Sbjct: 331 LNDYLQQMRSIKKMGGFGSILSMLPGSGKIFD-QIDQSKLNSKIIEHQEAIILSMTLKER 389
Query: 356 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 397
+ P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 390 KNPDIINAS--RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429
>sp|Q1RHD6|SRP54_RICBR Signal recognition particle protein OS=Rickettsia bellii (strain
RML369-C) GN=ffh PE=3 SV=1
Length = 449
Score = 335 bits (858), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 264/402 (65%), Gaps = 8/402 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+RDIR ALLE+DV+LPV++ FV V ++A+G +I+ V P Q ++KI+ +E++ ++
Sbjct: 31 LRDIRVALLESDVALPVIKNFVAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINILSSSE 90
Query: 61 SE--LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 118
E L P +L+ GLQG GKTT S KLA LK Q K +LV+ D YRPAA +QL
Sbjct: 91 DEIKLNLNAKPPVNLLMVGLQGSGKTTASGKLALCLKNQNKKVLLVSLDTYRPAAQEQLE 150
Query: 119 ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 178
IL V + KP I K+ + EAK D+VI DTAGR QID+ MM+E +K
Sbjct: 151 ILANSVKINSLPIVKGEKPLDIVKRAMAEAKLSAYDIVIYDTAGRTQIDQEMMNEAIAIK 210
Query: 179 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238
+++ PTE LLV+D+MTGQ+A ++FN ++ I+G IL+++DGDS+GGAALSVK ++ +P
Sbjct: 211 KIVEPTETLLVIDSMTGQDAVVTASSFNEQLEISGLILSRIDGDSKGGAALSVKYITQRP 270
Query: 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD 298
IK + GE++ DLE F R+A RIL MGD++SFVEKA ++ +E AE+ K+ FD
Sbjct: 271 IKFLSSGEKLTDLEEFDAKRIASRILDMGDIISFVEKAASIVDREQAEKTAAKLKKGKFD 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEER 355
ND+L+Q +++ ++G ++ M+PG GKI Q+ +++ + KI+ EA+I +MTP+ER
Sbjct: 331 LNDYLQQMKSIKKIGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKER 389
Query: 356 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 397
P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 390 RNPDIINAS--RRKRIALGAGTTVQKVNILLKQFKQISDMMK 429
>sp|Q68XJ4|SRP54_RICTY Signal recognition particle protein OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=ffh PE=3 SV=1
Length = 449
Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 265/402 (65%), Gaps = 8/402 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGE- 59
MRD+R ALLE+DV+LPV++ F+ V ++A+G +I+ V P Q ++KI+ +E++ L+
Sbjct: 31 MRDVRVALLESDVALPVIKGFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASSE 90
Query: 60 -VSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 118
++L P +L+ GLQG GKTT S KLA LK Q K +LV+ D YRPAA +QL
Sbjct: 91 STTKLNLNSKPPVNLLMVGLQGGGKTTASGKLALLLKNQNKKVLLVSLDTYRPAAQEQLA 150
Query: 119 ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 178
I+ V + +P I K+ + EAK DVVI DTAGR+QID MM+E +K
Sbjct: 151 IIANSVNIDSLPIVQGEQPLDIVKRAISEAKIFAYDVVIYDTAGRIQIDNVMMEEALAIK 210
Query: 179 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238
++LNPTE LLV+D+MTGQ+A +F+ ++ I+G IL+++DGD++GGAALSVK ++ KP
Sbjct: 211 KILNPTETLLVIDSMTGQDAVVTARSFSDKLEISGLILSRIDGDTKGGAALSVKYLTQKP 270
Query: 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD 298
IK + GE++ DLE F +R+A RIL MGD++SFV+KA ++ +E+AE K+ S FD
Sbjct: 271 IKFLSCGEKLTDLEEFDAERLASRILDMGDIISFVKKAASIVDREEAERTAIKLKSGKFD 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEER 355
ND+LK R++ +MG ++ M+PG GKI Q+ +++ +I+ EA+I +MT +ER
Sbjct: 331 LNDYLKHMRSIKKMGGFGSILSMLPGSGKIID-QIDQSKLDSRIIEHQEAIILSMTLKER 389
Query: 356 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 397
+ P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 390 KNPDIINAS--RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429
>sp|P44518|SRP54_HAEIN Signal recognition particle protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ffh PE=3
SV=1
Length = 462
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 186/402 (46%), Positives = 261/402 (64%), Gaps = 5/402 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+R++R ALLEADV+LPVVR F+ V E A+G + + + P Q+ +KIV+ EL K MG
Sbjct: 31 LREVRMALLEADVALPVVREFIAKVKESALGEEVNKSLTPGQEFLKIVQRELEKAMGEAN 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVI 119
L A P VIL+AGLQG GKTT KLA +L+ + K ++V+ DVYRPAAI QL
Sbjct: 91 ESLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLRERHKKKVLVVSADVYRPAAIKQLET 150
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
L + VGV + + + P IAK L +AK K DV+IVDTAGRL +D MMDE+K V
Sbjct: 151 LAQSVGVDFFPSDVKQNPVDIAKSALADAKLKFYDVLIVDTAGRLHVDTEMMDEIKQVHA 210
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
LNP E L VDAMTGQ+AA FN + +TG ILTK+DGD+RGGAALS+++++GKPI
Sbjct: 211 ALNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPI 270
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFD 298
K +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + +E AE+M +K +F
Sbjct: 271 KFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDLERSVDREKAEKMAQKFKKGDDFT 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMIEAMTPEEREK 357
+DF +Q + +MG M ++ +PG ++ + + + + MEA+I +MT +ER
Sbjct: 331 LDDFREQLIEMKKMGGMMSMLEKLPGAKNLSEHVKNQVDDKMFVKMEAIINSMTLKERAN 390
Query: 358 PELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
P+++ S RR+R+A SG Q V++L+ Q +M+ MK +
Sbjct: 391 PDIIKGS--RRRRIALGSGTQVQDVNKLLKQFDEMQRMMKKM 430
>sp|O07347|SRP54_THEAQ Signal recognition particle protein OS=Thermus aquaticus GN=ffh
PE=1 SV=3
Length = 430
Score = 327 bits (839), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 183/399 (45%), Positives = 268/399 (67%), Gaps = 13/399 (3%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+R+IRRAL++ADV+L V R FV+ V E+A+G ++ + P + ++ V + L + +GGE
Sbjct: 31 LREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGE- 89
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+ L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +QL +L
Sbjct: 90 ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL 148
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
GE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL +K V
Sbjct: 149 GEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
L P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+GKPI
Sbjct: 209 LGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIY 268
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 300
G E+ E LEPFYP+R+AGRILGMGDV S EK + + +A + K++
Sbjct: 269 FAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKEL-----SLE 323
Query: 301 DFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPEL 360
DFLKQ + + R+G S ++G++PG+ P ++ EK++K +EA++ +MTPEER+ P +
Sbjct: 324 DFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEERKDPRI 379
Query: 361 LAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
L S RRKR+A+ SG + Q+V++ + +M+ MK+L
Sbjct: 380 LNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416
>sp|Q9ZK62|SRP54_HELPJ Signal recognition particle protein OS=Helicobacter pylori (strain
J99) GN=ffh PE=3 SV=1
Length = 448
Score = 315 bits (806), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 172/411 (41%), Positives = 261/411 (63%), Gaps = 19/411 (4%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQ--AVGVGLIRGVRPDQQLVKIVRDELVKLMGG 58
+ ++++ LL+ DV V R ++ V Q A G+G QQ + + L++++
Sbjct: 29 LDELKKTLLKNDVHHKVARELLKKVESQTKAGGIG-------KQQFLDALEKSLLEILSA 81
Query: 59 EVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 117
+ S FA++ PTV+L+AGLQG GKTT +AKLA+YLK + K +L A D+ R AA++QL
Sbjct: 82 KGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQL 141
Query: 118 VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDV 177
+LGEQVGV V+ + +IA L+ AK+ DV+IVD+AGRL IDK +M ELK+V
Sbjct: 142 KVLGEQVGVEVFHEENK-SVKEIANNALKRAKEAQFDVLIVDSAGRLAIDKELMQELKEV 200
Query: 178 KRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGK 237
K VLNP EVL V DA++GQ+ TFN EIG++G +L+K D DS+GG AL + G
Sbjct: 201 KEVLNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGL 260
Query: 238 PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANF 297
P++ +G GE++ DL+ F P+R+ GR++G GD++S EK V+ +A+++ KK+ F
Sbjct: 261 PLRFIGSGEKIPDLDVFMPERIVGRLMGAGDIISLAEKTASVLNPNEAKDLSKKLKKGQF 320
Query: 298 DFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEE 354
FNDFL Q V ++GSMS +I MIPG+G + A + + E SL++ ++AM+ +MT +E
Sbjct: 321 TFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKE 380
Query: 355 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ---MRVRMKNLMGV 402
RE PE+L S RRKR+A SG ++++++ + Q M R+ N G+
Sbjct: 381 RENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429
>sp|P56005|SRP54_HELPY Signal recognition particle protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ffh PE=3 SV=1
Length = 448
Score = 311 bits (796), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 171/412 (41%), Positives = 261/412 (63%), Gaps = 21/412 (5%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQA--VGVGLIRGVRPDQQLVKIVRDELVKLMGG 58
+ ++++ LL+ DV V R ++ V Q G+G QQ + + L++++
Sbjct: 29 LDELKKTLLKNDVHHKVARELLKKVESQTKLNGIG-------KQQFLDALEKSLLEILSA 81
Query: 59 EVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 117
+ S FA++ PTV+L+AGLQG GKTT +AKLA+YLK + K +L A D+ R AA++QL
Sbjct: 82 KGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQL 141
Query: 118 VILGEQVGVPV-YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD 176
+LGEQVGV V Y VK +IA L+ AK+ DV++VD+AGRL IDK +M ELK+
Sbjct: 142 KVLGEQVGVEVFYEENKSVK--EIASNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKE 199
Query: 177 VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 236
VK +LNP EVL V DA++GQ+ TFN EIG++G +L+K D DS+GG AL + G
Sbjct: 200 VKEILNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLG 259
Query: 237 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN 296
P++ +G GE++ DL+ F P+R+ GR++G GD++S EK V+ +A+++ KK+
Sbjct: 260 LPLRFIGSGEKIPDLDVFVPERIVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQ 319
Query: 297 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPE 353
F FNDFL Q V ++GSMS +I MIPG+G + A + + E SL++ ++AM+ +MT +
Sbjct: 320 FTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKK 379
Query: 354 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ---MRVRMKNLMGV 402
E+E PE+L S RRKR+A SG ++++++ + Q M R+ N G+
Sbjct: 380 EQENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429
>sp|Q01442|SRP54_MYCMY Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh
PE=1 SV=1
Length = 447
Score = 301 bits (771), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 157/413 (38%), Positives = 270/413 (65%), Gaps = 5/413 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+++IR +LLEADV++ + + V ++A+G + G QQ++KIV +ELV ++G E
Sbjct: 33 LKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELVNILGKEN 92
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVI 119
+ L K +P+V+++ GLQG GKTT + KLA L K+ K +L+ G D+YRP AI+QLV
Sbjct: 93 APLDINK-KPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRPGAIEQLVQ 151
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
LG++ V+ G + P + A+Q LE AK+ N DVVI+DTAGRLQ+D+ +M EL ++K+
Sbjct: 152 LGQKTNTQVFEKGKQ-DPVKTAEQALEYAKENNFDVVILDTAGRLQVDQVLMKELDNLKK 210
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
+P E+LLVVD M+GQE + FN ++ ++G ++TKLDGD+RGGA LS+ ++ PI
Sbjct: 211 KTSPNEILLVVDGMSGQEIINVTNEFNDKLKLSGVVVTKLDGDARGGATLSISYLTKLPI 270
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDF 299
K +G GE L FYP RMA R++GMGD+ + E+A E + + ++ ++ FD
Sbjct: 271 KFIGEGEGYNALAAFYPKRMADRLMGMGDIETLFERAVENIDERSIQKTMNRMFLGQFDL 330
Query: 300 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPE 359
D Q +A+MGS+++++ M+P + K++ +Q++EA++ L + ++++MT +ER P
Sbjct: 331 EDLRNQLAQIAKMGSLNKLMKMLP-INKVSESQIQEAQRKLAVFSILMDSMTLKERRDPR 389
Query: 360 LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALS 412
+L ++ R+ R+ + SG++E++ ++L+ + + ++ + +++ G +P LS
Sbjct: 390 VL-KAISRKNRIIKGSGRSEKEFNELINSFEKGKKQVLEITKMIKSGRMPNLS 441
>sp|P75054|SRP54_MYCPN Signal recognition particle protein OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=ffh PE=3 SV=1
Length = 450
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/410 (38%), Positives = 254/410 (61%), Gaps = 4/410 (0%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+++IR ALL+ADV+L VV+ F++A+ EQ VG + G + L+K+++ EL+ ++
Sbjct: 32 LKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKVIKQELINILSQPN 91
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVI 119
E+ RP +++ GLQG GKTT KLA +LKKQ + MLVA D+YRPAAIDQL
Sbjct: 92 QEI--TSKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQKAMLVALDIYRPAAIDQLAT 149
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
L EQ + GT+ P Q K+ ++ K+ +I DTAGRLQ ++ +MDEL +K
Sbjct: 150 LAEQTESVFFAKGTQA-PDQTTKEAVKTFKESGCQAIICDTAGRLQTNQELMDELVAIKN 208
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
L+P E+L+VVD ++GQE + F+ + +TG I+TKLD D+R GAALS+ + PI
Sbjct: 209 ELHPDEILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAALSLTSLLEVPI 268
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDF 299
KL+G E++ LE F+P+R+A RILG+GDV++ VEKA+EV ++ + K+ D
Sbjct: 269 KLMGTSEKLTGLEQFHPERIASRILGLGDVMTLVEKAEEVFDKQSLTKTVSKMFLGKMDL 328
Query: 300 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPE 359
D L + +MGS+S ++ M+PG ++ V E +K+ + +I +MT EER P+
Sbjct: 329 EDLLLYMEQMNQMGSVSSIVKMLPGNLTVSDDHVESIEAKVKLWKVLINSMTREERRHPK 388
Query: 360 LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 409
L+ P R++R+ + SG+ ++++L+ + +++ + + +++GG P
Sbjct: 389 LINRDPSRKQRIIKGSGRKMDELNKLMKEWSKLQTKTAEMGRMLKGGKNP 438
>sp|Q89AE4|SRP54_BUCBP Signal recognition particle protein OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ffh PE=3 SV=1
Length = 450
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 243/392 (61%), Gaps = 5/392 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+R+IR ALLEADV+LPVV+ F+ ++ + +G + + + P Q+L+KIV+ EL ++G E
Sbjct: 31 LREIRIALLEADVALPVVKNFIPSIQKSVIGNQVNKSLTPGQELIKIVKKELTLILGKEN 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVI 119
L + + P +IL+ GLQG GKTT +AKL ++ K K ++ + D+YR AAI QL +
Sbjct: 91 HSLNLSVTPPAIILMIGLQGSGKTTTTAKLGQLIRTKYKKKVIVTSIDIYRLAAIKQLKM 150
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
L +Q + + + P I + ++ AK K DV+++DTAGRLQIDK MM+EL DV
Sbjct: 151 LSKQAKISFFPSNNTQSPKDIVQHAIQHAKLKFYDVLLIDTAGRLQIDKKMMNELLDVYN 210
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
+ +P E V DAM GQ++ ++ FN + ++ I+TK D D+R G LS+K ++ KPI
Sbjct: 211 ISHPIETFFVADAMFGQDSINVINEFNKYLPVSSFIITKTDSDTRAGIILSIKYLTKKPI 270
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FD 298
K +G GE++E+LE FYPDR+A RILGMGD+LS +E + + ++ ++ I N F+
Sbjct: 271 KFIGTGEKLEELELFYPDRIASRILGMGDMLSLIENIENKIDKKHIKKFSNTIKKYNTFN 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKIMEAMIEAMTPEEREK 357
FND L + ++G ++ ++G +P I + Q E L M+ +I +MT ER +
Sbjct: 331 FNDMLLHINQIKKIGGVNSILGKLPKTQTIFNSFQNNIDENILLKMKTIINSMTISERHQ 390
Query: 358 PELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 389
PEL+ S R++R++ SG +++QL+ Q
Sbjct: 391 PELIKGS--RKRRISLGSGIPIPEINQLLKQF 420
>sp|Q8K9F7|SRP54_BUCAP Signal recognition particle protein OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ffh PE=3 SV=1
Length = 450
Score = 299 bits (765), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 156/393 (39%), Positives = 252/393 (64%), Gaps = 7/393 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+R++R+ALLEADV+L V+++F+Q VS++A+G + + + P Q+ +KIV++EL+ MG +
Sbjct: 31 IREVRKALLEADVTLSVIKKFIQNVSKKAIGHEINKSLTPGQEFIKIVKNELILSMGEKN 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYRPAAIDQLVI 119
+L + P +IL+ GLQGVGKTT KLA ++K++ K +L V+ D+YR AAI QL I
Sbjct: 91 HDLNLSIQPPAIILVVGLQGVGKTTTLVKLAKWIKEKYKKKILTVSTDIYRAAAIKQLQI 150
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
L +QV + Y + T P I K+ +E AK K D++++DTAGRL I+ MM+E+ ++
Sbjct: 151 LSDQVKIDFYLSDTTQTPINITKEAIEHAKLKLYDLLLIDTAGRLHINTEMMNEINTIQN 210
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
+ P E LL+VD+M GQ+A + F+ + I+G ++TK D D+R G ALS++ ++GKPI
Sbjct: 211 ISKPIETLLIVDSMMGQDAINIAKKFSASLSISGIVITKTDSDARSGVALSIRHITGKPI 270
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFD 298
K +G GE++ LEPF+P+R+A RILGM V+S ++ +E + Q + + KK +F+
Sbjct: 271 KFIGTGEKLHQLEPFHPERIADRILGMNQVISLIKDIEEKVNQSQVKNLTKKFRKGDDFN 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ--VREAEKSLKIMEAMIEAMTPEERE 356
NDFL Q + + MG+++ I KI + E + +L +EA+I +MT +ER
Sbjct: 331 LNDFLIQLKEMKNMGNLNYFIEKFSK-NKILSNNPLLGENKNTLNRIEAIIYSMTHKERM 389
Query: 357 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 389
P ++ S R++R+A SG Q V++L+
Sbjct: 390 HPIIIKGS--RKRRIALGSGTKIQDVNKLLKNF 420
>sp|P57473|SRP54_BUCAI Signal recognition particle protein OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ffh PE=3 SV=1
Length = 451
Score = 295 bits (755), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 159/403 (39%), Positives = 260/403 (64%), Gaps = 6/403 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+R++R+ALLEADV+L V+++F++ V ++++G + + + P Q+ +KIV+ EL+ MG +
Sbjct: 31 IREVRKALLEADVALSVIKKFIENVKKKSIGHEINKSLTPGQEFIKIVKHELIFAMGEKN 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYRPAAIDQLVI 119
L F+ P VIL+ GLQG GKTT AKL ++K + K +L + D YR AAI+QL I
Sbjct: 91 HSLNFSIEPPAVILVVGLQGSGKTTSLAKLGKWIKNKYKKKILITSTDTYRAAAIEQLKI 150
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
L +Q+ + + + P +I K ++ AK K DV+++DTAGRL IDK MM+E++ ++
Sbjct: 151 LSDQIEIDFFESDKHHTPIEITKNAIKYAKLKLYDVLLIDTAGRLHIDKKMMNEIQQIQV 210
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
+ E LL+VD+M GQ+A + FN ++ I+G ILTK DGDSR G ALS++ ++GKPI
Sbjct: 211 ISKAIETLLIVDSMMGQDAINMAKIFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPI 270
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FD 298
K +G GE++ LEPF+P+R+A RILGM D++S +E +E + Q +++ KK+ + F+
Sbjct: 271 KFIGTGEKIISLEPFHPERIADRILGMNDIMSLIEDIEEKVDQSQIQKLTKKLKKGHDFN 330
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMTPEERE 356
NDFL Q + + ++G ++ +++ + + + +LK +EAMI +MTP+ER
Sbjct: 331 LNDFLTQIKQMKKIGGLNYFANKFSINHQLSNNISLLNTDKNTLKKIEAMICSMTPKERI 390
Query: 357 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
KP ++ S R++R+A SG Q V++L+ +R MK +
Sbjct: 391 KPIIIKGS--RKRRIALGSGTQIQDVNKLLKNFDDIRRIMKKI 431
>sp|Q57565|SRP54_METJA Signal recognition particle 54 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp54 PE=1 SV=1
Length = 451
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 244/389 (62%), Gaps = 8/389 (2%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++DI+RAL++ADV++ +V + + + +A+ +G+ + ++KIV +ELVKL+G E
Sbjct: 31 IKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEA 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+L + VILL G+QG GKTT +AKLA Y++K+G L+A D YRPAA +QL L
Sbjct: 91 KKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQL 150
Query: 121 GEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
E++ VP+Y T K P I K+G+E+ KK DV+I+DTAGR + +K +++E+K +K
Sbjct: 151 AEKIHVPIYGDETRTKSPVDIVKEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEMKQIKE 208
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKP 238
+ NP E++LV+D GQ+A F +G G+I+ TKLDG ++GG ALS + P
Sbjct: 209 ITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAP 268
Query: 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD 298
IK +G GE ++DLEPF P + R+LGMGD+ S +EKA++ M E EE IM F
Sbjct: 269 IKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIMRGKFT 327
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREK 357
N+ + Q + MGSM +++ MIPG G P ++ E +K + +I +MT EERE
Sbjct: 328 LNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEEREN 387
Query: 358 PELLAESPVRRKRVAQDSGKTEQQVSQLV 386
P+++ S +R R+A+ SG TE V +++
Sbjct: 388 PKIIKASRIR--RIARGSGTTENDVREVL 414
>sp|P47294|SRP54_MYCGE Signal recognition particle protein OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=ffh PE=3 SV=1
Length = 446
Score = 288 bits (737), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 153/410 (37%), Positives = 253/410 (61%), Gaps = 4/410 (0%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+++IR ALL+ADV+L VV+ F++A+ ++ VG + G + L+K ++ EL+ ++
Sbjct: 32 LKEIRIALLDADVNLLVVKNFIKAIRDKTVGQTIEPGQDLQKSLLKTIKTELINILSQPN 91
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS-CMLVAGDVYRPAAIDQLVI 119
EL + RP I++ GLQG GKTT KLA +L+K+ K MLV D+YRPAAI+QL
Sbjct: 92 QEL--NEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQLET 149
Query: 120 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
L +Q + GT+ ++ K L K +I DTAGRLQ ++ +MDEL VK
Sbjct: 150 LSQQTNSVFFAQGTQ-PVAKTTKAALSAFKTAKCQTIICDTAGRLQTNETLMDELVSVKN 208
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239
LNP E+++VVD ++GQE + TF+ + +TG I++KLD D+R GAALS+ + PI
Sbjct: 209 ELNPDEIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAALSLASLLQVPI 268
Query: 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDF 299
KL+G E+++ LE F+P+R+A RILG+GDV+S VEKA++V ++D + K+ D
Sbjct: 269 KLIGVSEKLDGLEQFHPERIANRILGLGDVMSLVEKAEQVFDKKDLTKTISKMFLGKMDL 328
Query: 300 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPE 359
D L + + +MGS+S +I M+P ++ E +++ + +I +MT EER P+
Sbjct: 329 EDLLIYMQQMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLINSMTREERRHPK 388
Query: 360 LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 409
L+ P R++R+ + SG+ ++++L+ + +M+++ + +++ GS P
Sbjct: 389 LINRDPNRKQRIIKGSGRKMDELNKLMKEWNKMQLKATEMGKLLKTGSNP 438
>sp|A6UQJ8|SRP54_METVS Signal recognition particle 54 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54
PE=3 SV=1
Length = 450
Score = 281 bits (719), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 160/415 (38%), Positives = 259/415 (62%), Gaps = 14/415 (3%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++DI++AL+++DV++ +V + + +A+ +G + ++KIV DELVKL+G
Sbjct: 31 IKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGFSKKEHIIKIVYDELVKLLGENP 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+L S+ +VILL G+QG GKTT SAKLA Y++K+G L+A D+YRPAA QL L
Sbjct: 91 QKLELDPSKKSVILLVGIQGSGKTTSSAKLARYIQKKGMKPALIAADIYRPAAYQQLKQL 150
Query: 121 GEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
E++ VP++ T+ K P +I K+G+E+ KK DV+I+DTAGR + ++++++E+K +K
Sbjct: 151 SEKINVPLFGDETKTKTPVEIVKEGIEKLKKS--DVLIIDTAGRHKEEESLLEEMKQMKE 208
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALS-VKEVSGK 237
+ NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS V E++
Sbjct: 209 ITNPNEIILVIDGTLGQQAKNQAKAFKDAVSEIGSILVTKLDGSAKGGGALSAVAEINA- 267
Query: 238 PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANF 297
PIK +G GE +++LE F P + R+LGMGD+ S +EK ++VM E EE I+ F
Sbjct: 268 PIKFIGTGEGVDNLETFDPKKFISRLLGMGDLDSLLEKTEDVM-DESTEESIDSILKGKF 326
Query: 298 DFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEERE 356
+ Q T+++MG M +++GMIPG G P + + E+ LK + M+++MT EE+E
Sbjct: 327 TLVELYAQLETISKMGPMKQIMGMIPGFGGNMPKEAAQLTEQKLKRYKIMMDSMTMEEKE 386
Query: 357 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 411
PEL+ S R +R+A+ +G + ++ L+ + KN G ++ G +P +
Sbjct: 387 NPELIKTS--RLQRIAKGAGVKQDEIKDLL----KYYATTKNAFGNLKRGKMPKM 435
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 281 bits (719), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 158/401 (39%), Positives = 244/401 (60%), Gaps = 5/401 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+RDI+RAL++ADV++ +V + + ++A+ GV + ++KIV +EL K +G E
Sbjct: 32 VRDIQRALIQADVNVRLVLDLTKRIEKRALEEEPPTGVSKKEHIIKIVYEELTKFLGTEA 91
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+ K +PTV+L G+QG GKTT AKLA Y +K+G LV D +RP A QL L
Sbjct: 92 KPIEI-KEKPTVLLTVGIQGSGKTTSIAKLARYFQKRGYKVGLVCSDTWRPGAYQQLKQL 150
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
E G+ V+ E ++AK+G+E ++K VD++IVD+AGR + +K++++E+K +
Sbjct: 151 VEPFGIEVFGDPEEKDAIKLAKEGVEHFREKGVDIIIVDSAGRHKEEKSLIEEMKQISAA 210
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
+ P EV+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK
Sbjct: 211 IKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIK 270
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDF 299
+G GER++DLEPF P R R+LG+GD+ +EK +E+ QQE EE +K + F+
Sbjct: 271 FIGVGERIDDLEPFDPKRFVSRLLGLGDIQGLLEKFEELQKQQEFREEDLEKFLKGKFNL 330
Query: 300 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKP 358
D Q + +MG + +++ MIPGMG P VR E+ LK + ++++MT EE E P
Sbjct: 331 KDMYAQLEAMQKMGPLKQILQMIPGMGYSLPDDAVRVGEERLKKFKVIMDSMTEEELEHP 390
Query: 359 ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
E++ S R KR+A+ SG + Q+V +L+ Q QM+ K++
Sbjct: 391 EIINYS--RIKRIARGSGTSIQEVRELLHQYNQMKKMFKSM 429
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/401 (39%), Positives = 244/401 (60%), Gaps = 5/401 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+RDI+RALL+ADV++ +V + + + ++A+ GV + ++KIV +EL K +G E
Sbjct: 32 VRDIQRALLQADVNVKLVLQLTKQIQKRALEEEPPAGVSKKEHIIKIVYEELTKFLGTEA 91
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
L K +PTVIL G+QG GKTT AKLA YL+K+G +V D +RP A QL L
Sbjct: 92 KPLEI-KHKPTVILTVGIQGSGKTTSVAKLARYLQKRGYKVGVVCSDTWRPGAYYQLRQL 150
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
+ G+ V+ E ++A++G+E ++K VDV+IVD+AGR + +K +++E++ +
Sbjct: 151 LDPFGIEVFGDPEEKDAVKLAREGVEHFREKGVDVIIVDSAGRHKEEKGLIEEMRQISEA 210
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
+ P EV+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK
Sbjct: 211 IKPHEVILVIDGTIGQQAYNQAMAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIK 270
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDF 299
+G GER++DLEPF P R R+LG+GD+ +EK +E+ +QE EE +K + F+
Sbjct: 271 FIGTGERIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFREEDMEKFLRGKFNL 330
Query: 300 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKP 358
D Q + +MG + +++ MIPG+G P VR E+ LK + ++++MT EE E P
Sbjct: 331 KDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTEEELENP 390
Query: 359 ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
E++ S R KR+A+ SG T +V +L+ Q QM+ K+L
Sbjct: 391 EIINYS--RIKRIARGSGATTAEVRELLNQYNQMKKMFKSL 429
>sp|C5A233|SRP54_THEGJ Signal recognition particle 54 kDa protein OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=srp54 PE=3 SV=1
Length = 448
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/401 (39%), Positives = 245/401 (61%), Gaps = 5/401 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+RDI+RAL+++DV++ +V + + + E+A+ GV P + ++KIV +EL KL+G E
Sbjct: 32 VRDIQRALIQSDVNVRLVLQLTKRIQERALNEKPPAGVSPREHVIKIVYEELTKLLGKEA 91
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
L + +PT++L G+QG GKTT AKLA +L+K+G LV D +RP A QL L
Sbjct: 92 VPLEI-REKPTILLTVGIQGSGKTTTIAKLARHLQKRGYKVGLVCTDTWRPGAYYQLKQL 150
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
E + V+ E ++A++G+E K K VDV+IVDTAGR + + +++E+K +
Sbjct: 151 VEPYNIEVFGDPGEKDAIKLAREGVEYFKDKGVDVIIVDTAGRHKEESGLIEEMKQISEA 210
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
+ P EV+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK
Sbjct: 211 IKPHEVILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIK 270
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDF 299
+G GE+++DLEPF P R R+LG+GD+ +EK +E+ +QE EE +K + F+
Sbjct: 271 FIGVGEKIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNL 330
Query: 300 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKP 358
D Q + +MG + +++ MIPG+G P + VR E+ L+ ++++MT EE E P
Sbjct: 331 KDMYAQLEAMQKMGPLKQILQMIPGLGYSLPDEAVRVGEEKLRRYRIIMDSMTEEELENP 390
Query: 359 ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
+++ S R KR+A+ SG + ++V +L+AQ QMR KNL
Sbjct: 391 DIINYS--RIKRIARGSGTSTREVRELLAQYNQMRKMFKNL 429
>sp|A6VHE0|SRP54_METM7 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3
SV=1
Length = 450
Score = 278 bits (710), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 161/415 (38%), Positives = 258/415 (62%), Gaps = 14/415 (3%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELV L+G
Sbjct: 31 IKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVNLLGETT 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA QL L
Sbjct: 91 QKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQL 150
Query: 121 GEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
E++ VP++ T K P +I K+G+E+ KK VDV+I+DTAGR + ++ ++ E++++K
Sbjct: 151 SEKINVPLFGDETRTKTPVEITKEGMEKLKK--VDVIIIDTAGRHKEEEGLLAEMREMKD 208
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALS-VKEVSGK 237
+ NPTE++LV+D GQ+A F + G+IL TKLDG ++GG ALS V E++
Sbjct: 209 LTNPTEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINA- 267
Query: 238 PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANF 297
PIK +G GE +++LE F P + RILGMGD+ S +EK +++M E EE I+ F
Sbjct: 268 PIKFIGTGEGVDNLEQFDPKKFISRILGMGDLDSLLEKTEDIM-DESTEESIDSILKGKF 326
Query: 298 DFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEERE 356
+ Q T+++MG M +++ MIPGMG P + + E LK + M+++MT EE+E
Sbjct: 327 TLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDSMTMEEKE 386
Query: 357 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 411
PEL+ S R +R+A+ +G ++++ L + KN G ++ G +P +
Sbjct: 387 NPELIKAS--RLQRIAKGAGVKQEEIK----DLLKYYSTTKNAFGNLKRGKMPKM 435
>sp|A9A9B0|SRP54_METM6 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3
SV=1
Length = 450
Score = 278 bits (710), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 162/415 (39%), Positives = 258/415 (62%), Gaps = 14/415 (3%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELVKL+G +
Sbjct: 31 IKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETI 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA QL L
Sbjct: 91 QKLELDASKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQL 150
Query: 121 GEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
E++ VP++ T K P I K+G+E+ KK VDV+I+DTAGR + ++ ++ E+K++K
Sbjct: 151 SEKINVPLFGDETRTKTPVDITKEGMEKLKK--VDVIIIDTAGRHKEEEGLLAEMKEMKD 208
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALS-VKEVSGK 237
+ NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS V E++
Sbjct: 209 LTNPNEIILVIDGTLGQQAKNQAKAFKDSVSEIGSILVTKLDGSAKGGGALSAVAEINA- 267
Query: 238 PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANF 297
PIK +G GE +++LE F P + RILG GD+ S +EK +++M E AEE I+ F
Sbjct: 268 PIKFIGTGEGVDNLEQFDPKKFISRILGFGDLDSLLEKTEDIM-DESAEESIDSILKGKF 326
Query: 298 DFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEERE 356
+ Q T+++MG M +++ MIPGMG P + + E LK + M+++MT EE+E
Sbjct: 327 TLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEDKLKRYKIMMDSMTMEEKE 386
Query: 357 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 411
PEL+ S R +R+A+ +G +++ L+ + KN G ++ G +P +
Sbjct: 387 NPELIKTS--RLQRIARGAGVKPEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435
>sp|A6UWG4|SRP54_META3 Signal recognition particle 54 kDa protein OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3
SV=1
Length = 450
Score = 275 bits (703), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 150/402 (37%), Positives = 248/402 (61%), Gaps = 8/402 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++DI++AL++ADV++ +V + + +A+ +G+ ++KIV DELVKL+G E
Sbjct: 31 IKDIQKALIQADVNVKLVFAMSKEIERKAIYESAPKGLSKKDHIIKIVYDELVKLLGEEG 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+L +ILL G+QG GKTT +AKLA L+K+G L+A DVYRPAA QL L
Sbjct: 91 QKLELDPKNKNIILLVGIQGSGKTTSAAKLARTLQKRGFKPALIAADVYRPAAYQQLKQL 150
Query: 121 GEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
E++ +P++ T+ K P +I ++GL++ KK DV+I+DTAGR + + +++E+K++K
Sbjct: 151 SEKIHIPLHGDPTKTKTPMEITEEGLKQFKKN--DVIIIDTAGRHKEESGLLEEMKEMKE 208
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKP 238
NP E++LV+D GQ+A F + G+IL TK+DG ++GG ALS G P
Sbjct: 209 KFNPEEIILVIDGTLGQQAKNQAKAFKDAVENIGSILITKMDGSAKGGGALSAVAEIGAP 268
Query: 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD 298
IK +G GE+++DLEPF P + R+LGMGD+ S +EK ++++ +D EE +M F
Sbjct: 269 IKFIGTGEKVDDLEPFDPKKFISRLLGMGDLDSLLEKTEDII-DDDTEESLDAMMRGKFT 327
Query: 299 FNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREK 357
N+ Q +++MGSM +++ MIPGMG P + E LK + ++++MT E+E
Sbjct: 328 LNELYSQLEAISKMGSMKQLMAMIPGMGTNLPKGAADITEHKLKKYKIIMDSMTSTEKEN 387
Query: 358 PELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
P+++ S R KR+A+ +G ++++ +L+ + +N+
Sbjct: 388 PDIIKTS--RMKRIAKGAGVKQEEIKELLKYYSTTKNAFQNM 427
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 266 bits (680), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 242/401 (60%), Gaps = 5/401 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV +EL K +G E
Sbjct: 32 VRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEA 91
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+ K +PT++L+ G+QG GKTT AKLA Y +K+G +V D +RP A QL L
Sbjct: 92 KPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQL 150
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
++ + V+ E ++AK+G++ K K VD++IVDTAGR + DKA+++E+K + V
Sbjct: 151 LDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNV 210
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
++P EV+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK
Sbjct: 211 IHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIK 270
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDF 299
+G GE+++D+EPF P R R+LG+GD+ +EK +E+ ++ E EE ++ + F
Sbjct: 271 FIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTL 330
Query: 300 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKP 358
D Q + +MG + +++ MIPG+G P V E+ LK + ++++MT EE P
Sbjct: 331 KDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNP 390
Query: 359 ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
E++ S R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 391 EIINYS--RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSM 429
>sp|Q6LX03|SRP54_METMP Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp54 PE=3 SV=1
Length = 450
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 164/417 (39%), Positives = 261/417 (62%), Gaps = 18/417 (4%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELVKL+G
Sbjct: 31 IKDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVYDELVKLLGETT 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA QL L
Sbjct: 91 QKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQL 150
Query: 121 GEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
E++ VP++ T K P +I K+G+E+ KK VDV+I+DTAGR + ++ ++ E+K++K
Sbjct: 151 SEKINVPLFGDETRTKTPVEITKEGMEKLKK--VDVIIIDTAGRHKEEEGLLAEMKEMKD 208
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALS-VKEVSGK 237
+ NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS V E++
Sbjct: 209 LTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINA- 267
Query: 238 PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANF 297
PIK +G GE +++LE F P + RILG+GD+ S +EK +++M E EE I+ F
Sbjct: 268 PIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDSLLEKTEDIM-DESTEESIDSILKGKF 326
Query: 298 DFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP---AQVREAEKSLKIMEAMIEAMTPEE 354
+ Q T+++MG M +++ MIPGMG P AQ+ EA+ LK + M+++MT EE
Sbjct: 327 TLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEAK--LKRYKIMMDSMTMEE 384
Query: 355 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 411
+E PEL+ S R +R+A+ +G ++++ L + KN G ++ G +P +
Sbjct: 385 KENPELIKTS--RLQRIAKGAGVKQEEIK----DLLKYYSTTKNAFGNLKRGKMPKM 435
>sp|A4FVX4|SRP54_METM5 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3
SV=1
Length = 450
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 161/415 (38%), Positives = 257/415 (61%), Gaps = 14/415 (3%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELVKL+G
Sbjct: 31 IKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETT 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA QL L
Sbjct: 91 QKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQL 150
Query: 121 GEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179
E++ VP++ T K P I K+G+E+ KK VDV+I+DTAGR + +++++ E+K++K
Sbjct: 151 SEKINVPLFGDETRTKTPVDITKEGMEKLKK--VDVIIIDTAGRHKEEESLLAEMKEMKD 208
Query: 180 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALS-VKEVSGK 237
+ NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS V E++
Sbjct: 209 LTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINA- 267
Query: 238 PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANF 297
PIK +G GE +++LE F P + RILG+GD+ S +EK +++M E EE I+ F
Sbjct: 268 PIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDSLLEKTEDIM-DESTEESIDSILKGKF 326
Query: 298 DFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEERE 356
+ Q T+++MG M +++ MIPGMG P + + E LK + M+++MT EE+E
Sbjct: 327 TLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDSMTLEEKE 386
Query: 357 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 411
PEL+ S R +R+A+ +G + ++ L + KN G ++ G +P +
Sbjct: 387 NPELIKTS--RLQRIAKGAGVKQDEIK----DLLKYYSTTKNAFGNLKRGKMPKM 435
>sp|Q2NE47|SRP54_METST Signal recognition particle 54 kDa protein OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1
Length = 444
Score = 258 bits (660), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 146/387 (37%), Positives = 238/387 (61%), Gaps = 7/387 (1%)
Query: 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS 61
+DI+RAL+++DV++ VV + + ++A+ L +G+ P + +++IV ELV L+G +
Sbjct: 32 KDIQRALIQSDVNVKVVFGLTKKIEKRALEEELPKGLSPKEHVMRIVYQELVNLIGEKPE 91
Query: 62 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG 121
EL + +P I++ GLQG GKTT +AKL +LKK+G + +V D +RPAA +QL L
Sbjct: 92 ELKINR-KPYKIMMLGLQGSGKTTTTAKLVKHLKKKGHTSAIVCTDTWRPAAYEQLRQLT 150
Query: 122 EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 181
E + VPV+ +AK+GLE+ K DV++VDTAGR + +K ++DE+ ++ +++
Sbjct: 151 EPLDVPVFGDPENKDAIDLAKKGLEKCGSK-YDVILVDTAGRHKEEKDLLDEMAELSQIV 209
Query: 182 NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALS-VKEVSGKPIK 240
P EV+LV+D GQ+A + TF I I++KLDG ++GG ALS V E+ PIK
Sbjct: 210 QPDEVILVIDGTIGQQARSQAETFKKTTDIGSIIVSKLDGSAKGGGALSAVAEIRA-PIK 268
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 300
+G GER++D E F P+R R+LGMGD+ + +EKA EV ++ +EM I+S F
Sbjct: 269 FIGTGERVDDFEAFDPERFISRLLGMGDLDTLIEKAAEVTSEKSDKEMIDSIISGKFTLK 328
Query: 301 DFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPE 359
D Q + +MG + +++ +IPG+G PA + E+ L + + ++ +MT E E PE
Sbjct: 329 DMENQLEMMNKMGPIQQIMKLIPGLGNQLPANASKVTEEKLGMYKILMNSMTTYELENPE 388
Query: 360 LLAESPVRRKRVAQDSGKTEQQVSQLV 386
++ +S R R+++ +G T V L+
Sbjct: 389 VIKKS--RINRISRGAGLTNDDVKDLL 413
>sp|O59307|SRP54_PYRHO Signal recognition particle 54 kDa protein OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=srp54 PE=3 SV=3
Length = 443
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/401 (35%), Positives = 237/401 (59%), Gaps = 5/401 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+RDI+RALL+ADV++ +V + + + +A+ G+ + ++KIV +EL K +G E
Sbjct: 32 VRDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEA 91
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+ K +PTV+L G+QG GKTT AKLA Y +K+G +V D +RP A QL L
Sbjct: 92 KPIEI-KEKPTVLLTVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLKQL 150
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
+ + V+ E ++AK+G+E K ++VD++IVDTAGR + +K +++E++ +
Sbjct: 151 LDPYHIEVFGDPNEKDAVKLAKEGVEYFKTRDVDLIIVDTAGRHKEEKDLIEEMRMISEE 210
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
+ P EV+LV+D GQ+A F I I+TKLD ++GG ALS +G PIK
Sbjct: 211 IRPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIK 270
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDF 299
+G GE+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE + + F
Sbjct: 271 FIGVGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDIDRFLRGKFTL 330
Query: 300 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKP 358
D Q + +MG + +++ MIPG+G P + + E+ L+ + ++++MT EE P
Sbjct: 331 KDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDELISVGEERLRKFKVIMDSMTEEELMNP 390
Query: 359 ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
E++ S R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 391 EIINYS--RIKRIARGSGTSIKDVKELLTQYNQMKKFFKSM 429
>sp|Q971S9|SRP54_SULTO Signal recognition particle 54 kDa protein OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=srp54 PE=3 SV=2
Length = 445
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/417 (35%), Positives = 247/417 (59%), Gaps = 15/417 (3%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+++++ +L+++DV++ +V Q + ++ + + + IV DEL KL GG++
Sbjct: 26 IKELQISLIKSDVNVKLVSNLTQKIKDRLEKEKPPTAIERREWFISIVYDELSKLFGGDI 85
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+ V K P VI+L G+QG GKTT + KLA + KK+G LVA DVYRPAA DQLV +
Sbjct: 86 NPEVMPKKIPYVIMLVGVQGSGKTTTAGKLALFYKKKGYKVGLVAADVYRPAAYDQLVQI 145
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK--AMMDELKDVK 178
G+Q+ VPVY IAK+G+E+ + D++IVDTAGR + +++E+K++
Sbjct: 146 GKQINVPVYGEPNNTDAVGIAKRGVEKFLSEKYDIIIVDTAGRHGYGEEVKLLEEMKNMY 205
Query: 179 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238
+ P EV+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS +G
Sbjct: 206 SEIKPDEVILVIDASIGQKAYDLASRFHQASPIGSIIVTKMDGTAKGGGALSAVAATGAA 265
Query: 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--AN 296
IK +G GE++++LE F P R RILGMGD+ S +EK + + + E ++ +++MS A
Sbjct: 266 IKFIGTGEKLDELEVFNPRRFVSRILGMGDIESIIEKIKGMEEYEQIQKKMEEVMSGKAK 325
Query: 297 FDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIMEAMIEAMTPE 353
D KQ + +MG +++++ M+PG G +I Q++ E+ +K ++ +MT +
Sbjct: 326 LTLRDIYKQLTALRKMGPLNKILQMLPGFGVFSQIPEEQLKLGEEKIKKFLVIMNSMTYK 385
Query: 354 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ------LFQMRVRMKNLMGVME 404
E + P ++ +S +R R+A+ SG + ++V +L+ Q L +M R K L + E
Sbjct: 386 ELDNPSIIDKSRIR--RIAKGSGTSPEEVKELLKQYQVTNNLLKMVKRRKGLAKLFE 440
>sp|Q9V1E8|SRP54_PYRAB Signal recognition particle 54 kDa protein OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=srp54 PE=3 SV=1
Length = 443
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/401 (35%), Positives = 238/401 (59%), Gaps = 5/401 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV +EL K +G E
Sbjct: 32 VRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEA 91
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+ K +PT++L+ G+QG GKTT AKLA + +K+G +V D +RP A QL L
Sbjct: 92 KPIEI-KEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQL 150
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
+ + V+ E ++AK+G+E K K VD++IVDTAGR + +K +++E++ +
Sbjct: 151 LDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNE 210
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
+ P EV+LV+D GQ+A F I I+TKLD ++GG ALS +G PIK
Sbjct: 211 IKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIK 270
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDF 299
+G GE+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE ++ + F
Sbjct: 271 FIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTL 330
Query: 300 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKP 358
D Q + +MG + +++ MIPG+G P +V E+ L+ + ++++MT EE P
Sbjct: 331 KDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNP 390
Query: 359 ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
+++ S R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 391 DIINYS--RIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429
>sp|A4YHL0|SRP54_METS5 Signal recognition particle 54 kDa protein OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1
Length = 446
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 238/409 (58%), Gaps = 15/409 (3%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++DI++AL+ +DV + +V + E+ + + +KIV DEL L GG+
Sbjct: 27 IKDIQKALISSDVQVKLVFSLTNKIKERLKKETPPSNLERREWFIKIVYDELSALFGGDK 86
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
V KS P VI+L G+QG GKTT + KLA + KK+G LV DVYRPAA++QL +
Sbjct: 87 EPEVNPKSIPWVIMLVGVQGTGKTTTAGKLAYFYKKRGYKVALVGADVYRPAALEQLQQI 146
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK--AMMDELKDVK 178
G+Q+ VPVY IAK+G+E+ + ++VIVDTAGR + +++E+KD+
Sbjct: 147 GKQINVPVYGEPGSQDAVGIAKRGVEKFLSERYELVIVDTAGRHGYGEEVKLLEEMKDIY 206
Query: 179 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238
+ P EV+LV+DA GQ+A L F+ + I+TK+DG ++GG ALS +G P
Sbjct: 207 EKIKPNEVILVIDASLGQKAYDLAKRFHEASNVGSIIITKMDGTAKGGGALSAVAATGAP 266
Query: 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKK---IMS- 294
IK +G GE++++LE F P R RILGMGD+ + +EK + + ED E +QKK +M+
Sbjct: 267 IKFIGVGEKIDELEVFNPRRFVARILGMGDLEAIIEKMKAM---EDYEGIQKKMGEVMTG 323
Query: 295 -ANFDFNDFLKQTRTVARMGSMSRVIGMIPG---MGKITPAQVREAEKSLKIMEAMIEAM 350
+ D KQ V +MG +S+++ +IPG MG I QV+ E+ ++ +++ +M
Sbjct: 324 KSKLTLRDMYKQIVAVRKMGPLSKILQLIPGMNMMGDIPEDQVKVGEQKMQRWLSIMNSM 383
Query: 351 TPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
T +E + P ++ + R +R+A SG ++V +L+ ++ +K L
Sbjct: 384 TYQELDNPSIIDKQ--RMRRIAMGSGTEVEEVRELIEHFNTVQRTLKML 430
>sp|A1RS43|SRP54_PYRIL Signal recognition particle 54 kDa protein OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3
SV=1
Length = 433
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 147/387 (37%), Positives = 236/387 (60%), Gaps = 9/387 (2%)
Query: 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS 61
R+I+RALL+ADV L +V+ F + ++ G+ P + ++ I+ DELVKL+GGE
Sbjct: 31 REIQRALLKADVPLDMVKTFTENAVKRMREEKPPAGIPPREYVLYILYDELVKLLGGEQP 90
Query: 62 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG 121
+P ++LL G++G GKTT +AKLA YL K+G LV D RPAA DQL L
Sbjct: 91 AEFKPVKKPYLVLLLGVEGSGKTTTAAKLARYLVKRGYRVGLVETDTIRPAAFDQLKQLA 150
Query: 122 EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 181
E++GVP Y +IA++G++ K N+DVVI+DTAGR + ++A++ E+K + +
Sbjct: 151 EKIGVPFYGERDSKDAVEIARRGVQNFK--NMDVVIIDTAGRHKNEEALLQEVKMIYEAV 208
Query: 182 NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKL 241
NP EV+LV+DA G+ AAA F + I I+TK+D +RGG AL+ +G +K
Sbjct: 209 NPDEVILVIDATVGKLAAAQAEAFMKYLPIHSVIITKMDSTARGGGALAAVIKTGARVKF 268
Query: 242 VGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFND 301
+G GE +++ + F P + R+LGMGD+ + VEK + V ++ E++ ++I S D
Sbjct: 269 IGVGEDVDEFDLFNPRKFVARVLGMGDLDALVEKIKAVFEE---EKVLQEIESGRLDLLT 325
Query: 302 FLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPE 359
F KQ + ++G +S+V+ ++PG KI+ QV ++K+LK A++ +MT EE + P+
Sbjct: 326 FKKQIEGLLKLGPLSKVLQLLPGGFAAKISEEQVELSQKNLKKWYAILSSMTIEELKNPD 385
Query: 360 LLAESPVRRKRVAQDSGKTEQQVSQLV 386
+L S +R R+A +G T + V +++
Sbjct: 386 ILNASRIR--RIALGAGVTPKDVKEML 410
>sp|A5UMY7|SRP54_METS3 Signal recognition particle 54 kDa protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3
SV=2
Length = 445
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 234/400 (58%), Gaps = 6/400 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+++I+RAL+++DV++ +V + + ++A+ +G+ P + ++ I+ +E+V L+GGE
Sbjct: 31 VKEIQRALIQSDVNIALVLDLSKKIKKRALEEEPPKGITPREHVITIIYEEMVNLLGGEA 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
L +P IL GLQG GKTT KL YL+K+G + +V D +RPAA +QL L
Sbjct: 91 PGLDI-DVKPYKILFLGLQGSGKTTTIGKLCRYLQKKGFNPAVVCTDTWRPAAYEQLRQL 149
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
E++ VP+Y +A++GL+E K N V+I DTAGR + ++ ++ E+ + +
Sbjct: 150 TEEMQVPLYGDPDNKDALDLAQKGLKEFK--NRKVIIFDTAGRHKQEEDLIAEMDTLDDI 207
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
+ PTE +LV+D GQ+A F+ + I+TKLDG ++GG A+S +G PIK
Sbjct: 208 IQPTESILVIDGTIGQQAGEQAKAFSQATDVGSIIITKLDGSAKGGGAMSAVAETGAPIK 267
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 300
+G GER++D E F P R R+LGMGD+ + +EKA++ + ++ AE+ K +MS F
Sbjct: 268 FIGTGERIDDFELFDPARFISRLLGMGDIQTLIEKAEDSIDEDMAEKTMKNMMSGKFTLV 327
Query: 301 DFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPE 359
D Q + MG M +V+ MIPG+G K++ + E + + ++ +MT +E E P+
Sbjct: 328 DMKNQFEMMNSMGPMQQVLSMIPGLGNKVSKEASKMTEDKIDGYKVIMSSMTKKEMENPK 387
Query: 360 LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
L+ +S +R R+A +G E +V L+ + MK +
Sbjct: 388 LIKQSRIR--RIAMGAGVEESEVRDLLKYYNNTKKTMKGI 425
>sp|A3DML3|SRP54_STAMF Signal recognition particle 54 kDa protein OS=Staphylothermus
marinus (strain ATCC 43588 / DSM 3639 / F1) GN=srp54
PE=3 SV=1
Length = 441
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 218/364 (59%), Gaps = 9/364 (2%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+RD+++ L++ADV++ +V + + E+A+ G+ + V IV +EL K GG+
Sbjct: 28 IRDLQKELIKADVNVKLVLELTKKIRERALKEEPPPGITRREWFVNIVYEELSKFFGGDK 87
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
+ K +P V+LL GLQG GKTT +AKLA Y K +G LVA D YRPAA DQL L
Sbjct: 88 KPDIKPKKKPWVMLLVGLQGSGKTTTAAKLAYYYKLEGYRVGLVAADTYRPAAYDQLKQL 147
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
GEQ+GVPVY +IA++G+E + D+VIVDTAGR ++ ++ E++++
Sbjct: 148 GEQIGVPVYGEPDNKDAVEIARRGVEYFVSRGFDIVIVDTAGRHHREEDLLREMREIAEN 207
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
+ P EV+LV+DA GQ+A L F+ I I+TKLDG ++GG ALS V+G IK
Sbjct: 208 IKPDEVVLVIDAAIGQQAHDLAKKFHEATPIGSIIVTKLDGTAKGGGALSAVAVTGATIK 267
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV---MQQEDAEEMQKKIMSANF 297
+G GE++++LE F P R RILG+GD+ +EK + + ++D EE +S
Sbjct: 268 FIGTGEKIDELEVFRPPRFVARILGIGDLEGLIEKVRRIKVEFTEKDVEEF----LSGRL 323
Query: 298 DFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVR--EAEKSLKIMEAMIEAMTPEER 355
+ KQ ++ +MG + +++ MIPG+ P ++ +AE+ +K A+I +MT EE
Sbjct: 324 NMRLVYKQLVSLRKMGPLRKILQMIPGLSLKIPLEIEAGKAEEKIKKWLAIINSMTYEEL 383
Query: 356 EKPE 359
+KPE
Sbjct: 384 DKPE 387
>sp|O27376|SRP54_METTH Signal recognition particle 54 kDa protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=srp54 PE=3 SV=1
Length = 442
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 238/399 (59%), Gaps = 5/399 (1%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
++DI+RAL+++DV++ +V +++ E+A+ +G+ P + ++ IV DE+VKL+G +
Sbjct: 31 IKDIQRALIQSDVNIKLVFNLSKSIEERALNEEPPKGITPKEHIISIVYDEMVKLLGEKS 90
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
ELV +P IL GLQG GKTT KLA YL+K+G + +V D +RPAA++QL
Sbjct: 91 HELVI-DDKPYRILFLGLQGSGKTTTIGKLARYLRKKGFTVGVVCTDTWRPAALEQLKQY 149
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180
E V +Y +A++GL +KK DV+I DTAGR + +K ++ E++++ +
Sbjct: 150 TEGQDVSIYGDPQNRDALDLAEKGLARFQKK--DVIIFDTAGRHKEEKDLLREMEELSAI 207
Query: 181 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240
+ P E +LV+D GQ+A F I I+TKLDG ++GG ALS G PIK
Sbjct: 208 VEPHEAILVIDGTIGQQAREQALAFRKATDIGSIIVTKLDGSAKGGGALSAVAEIGAPIK 267
Query: 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 300
+G GER++DLE F P+R R+LGMGD+ S +EK +EV ++E AEE I+S F
Sbjct: 268 FIGTGERIDDLEVFDPERFISRLLGMGDLRSLLEKVEEVSEEEIAEESLDAILSGKFTLR 327
Query: 301 DFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPEL 360
D Q + +MG + +V+ M+PG GK+ R E++++ ++++MT EE EKP++
Sbjct: 328 DMRVQFEMMGKMGPLQQVMSMLPGAGKLPKDASRMTEETIRKYLIIMDSMTEEELEKPDI 387
Query: 361 LAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399
+ S +R R+A+ SG + V +L+ + MK L
Sbjct: 388 IKHSRIR--RIARGSGTRNEDVKELLKYYRVTKKAMKGL 424
>sp|Q9HKT0|SRP54_THEAC Signal recognition particle 54 kDa protein OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=srp54 PE=3 SV=1
Length = 456
Score = 242 bits (617), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/406 (35%), Positives = 234/406 (57%), Gaps = 14/406 (3%)
Query: 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS 61
+D++R LL+ADV++ V + + + +A+ G+ +V+I+ +EL+K++G
Sbjct: 33 KDLQRILLKADVNVKTVLQVTKEMERRALEEKPPAGMAHQDYMVRIIYEELLKILG---- 88
Query: 62 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG 121
E K +P I+L GL G GKTT + KLA + K+G + L+A DV+R AA DQL +
Sbjct: 89 EPSNVKLKPQTIMLVGLYGNGKTTTAGKLARFFAKKGLNSGLIAADVHRYAAYDQLKQIA 148
Query: 122 EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 181
+V Y +E P ++ K GLE+ K +V V I+DT+GR +D + DE++ +K +
Sbjct: 149 SEVNAKFYGDQSEKDPVRLIKHGLEQLK--DVAVKIIDTSGRDSMDAELFDEIRRIKEAV 206
Query: 182 NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKL 241
P EVL+++DA GQ+A FN IG+TG I+TK+DG ++GG ALS PI
Sbjct: 207 APDEVLMIIDATMGQQAGPEAKAFNDAIGVTGIIITKMDGTAKGGGALSAVAEIHVPIYF 266
Query: 242 VGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEMQKKIMSANFDFN 300
+G GE M+DLE F P + R+LG+GD+ S E QE + +E+A+E +K+M+ F+
Sbjct: 267 IGTGEHMDDLEVFDPKKFLSRLLGLGDLESLFETVQEADITEEEAQESFEKLMTGKFNLK 326
Query: 301 DFLKQTRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 355
D ++ G M +++ IPG KI ++++ AE L++ ++++MT EE
Sbjct: 327 DMYDVWEKFSKPGLMKKLVDALPLARIPGSQKIDDSKIQSAEDKLRMYRIIMDSMTFEEL 386
Query: 356 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 401
E PE++ + R R+A+ +G E+ V L+ + M+ MK + G
Sbjct: 387 ENPEII--NAKRITRIARGAGVREEDVRMLLKEFKAMKNNMKMMKG 430
>sp|O07853|SRP54_SULAC Signal recognition particle 54 kDa protein OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=srp54 PE=3 SV=2
Length = 444
Score = 241 bits (615), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 135/399 (33%), Positives = 239/399 (59%), Gaps = 10/399 (2%)
Query: 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 60
+++++ L++ADV++ +V+ + ++ + + + IV DEL +L GG+
Sbjct: 26 IKELQIILIKADVNVRLVKDLTDRIKKRITEEKPPSAIEKREWFISIVYDELSRLFGGDK 85
Query: 61 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 120
V K P +I+L G+QG GKTT S KLA + KK+G LVA D+YRPAA +QL+ +
Sbjct: 86 EPEVMPKKLPYIIMLVGVQGSGKTTTSGKLALFYKKKGYKVGLVAADIYRPAAYEQLIQI 145
Query: 121 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDVK 178
G+Q+ +PVY P +IA GLE+ K+ +++VI+DTAGR + ++++E+K +
Sbjct: 146 GQQINIPVYGEPGNKNPIEIATNGLEKFLKEKMNIVIIDTAGRHGYGEEASLLEEMKSMY 205
Query: 179 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238
++P EV+LV+DA GQ+A L + F+ I I++K+DG ++GG ALS +G
Sbjct: 206 DKIHPDEVILVIDASIGQKAYDLASRFHQASPIGSLIVSKMDGTAKGGGALSAVIATGAQ 265
Query: 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--AN 296
IK +G GE++++LE F P R R+LG+GD+ S +EK + V E+ E+ + ++S
Sbjct: 266 IKFIGTGEKLDELEVFNPRRFVSRLLGLGDIESIIEKIKSVEDYENLEKRMEDVISGKTK 325
Query: 297 FDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIMEAMIEAMTPE 353
D KQ + +MG + ++ M+PG G ++ Q++ E+ ++ A++ +MT +
Sbjct: 326 LTLRDIYKQLIALRKMGPLGKIFQMLPGAGILSQVPEEQLKLGEEKIRTFMAIMNSMTYK 385
Query: 354 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQM 392
E + P ++ ++ R +R+A+ +G T ++V +L+ Q +QM
Sbjct: 386 ELDNPSIIDKA--RMRRIAKGAGVTVEEVKELLKQ-YQM 421
>sp|A4WLQ3|SRP54_PYRAR Signal recognition particle 54 kDa protein OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3
SV=1
Length = 433
Score = 241 bits (615), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 231/387 (59%), Gaps = 9/387 (2%)
Query: 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS 61
R+I+R LL+ADV L +V+ F ++ G+ P + L+ ++ +ELVKLMGGE
Sbjct: 31 REIQRTLLKADVPLDLVKTFTDNAVKRIREEKPPAGIPPREYLIYVLYEELVKLMGGEQP 90
Query: 62 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG 121
+P ++LL G++G GKTT SAKLA YL K+G +V D RPAA DQL L
Sbjct: 91 AEFKPTKKPYIVLLLGVEGSGKTTTSAKLARYLMKRGYKVGMVETDTIRPAAFDQLRQLA 150
Query: 122 EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 181
E++G P Y +IA++G+ A K VDV+I+DTAGR + ++A++ E+K + +
Sbjct: 151 EKIGAPFYGERDGKDAVEIARRGV--ANLKGVDVLIIDTAGRHRNEEALLQEVKAIYDAV 208
Query: 182 NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKL 241
NP EV+LVVDA G+ AAA F + I I+TK+D +RGG AL+ +G +K
Sbjct: 209 NPDEVVLVVDATVGKLAAAQAEAFMKYLPIHTVIITKMDSTARGGGALAAVAKTGARVKF 268
Query: 242 VGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFND 301
+G GE +E+LEPF P + R+LGMGD+ + +EK + V ++E+ E S D
Sbjct: 269 IGVGEDVEELEPFNPRKFVARLLGMGDLDALLEKIKAVFEEEEVLEEI---ESGRLDLLT 325
Query: 302 FLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPE 359
F KQ ++ ++G +S+V ++PG KI+ Q+ ++K+LK A++ +MT EE + P+
Sbjct: 326 FKKQIDSLMKLGPLSKVFQLLPGGLAAKISEEQIELSQKNLKKWRAILSSMTMEELKNPD 385
Query: 360 LLAESPVRRKRVAQDSGKTEQQVSQLV 386
+L S +R R+A +G T + V +++
Sbjct: 386 ILNASRIR--RIALGAGVTPKDVKEML 410
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,106,154
Number of Sequences: 539616
Number of extensions: 6679330
Number of successful extensions: 36421
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 219
Number of HSP's that attempted gapping in prelim test: 35677
Number of HSP's gapped (non-prelim): 552
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)