Query 012680
Match_columns 458
No_of_seqs 467 out of 4181
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:11:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0541 Ffh Signal recognition 100.0 9E-109 2E-113 825.8 34.8 400 1-402 31-431 (451)
2 KOG0780 Signal recognition par 100.0 4.2E-97 9E-102 724.5 34.2 452 1-458 32-483 (483)
3 PRK10867 signal recognition pa 100.0 1.4E-88 3.1E-93 700.0 34.6 396 1-401 31-427 (433)
4 TIGR01425 SRP54_euk signal rec 100.0 7.9E-88 1.7E-92 690.4 32.3 395 1-395 31-429 (429)
5 PRK00771 signal recognition pa 100.0 2.3E-86 5E-91 685.2 34.1 408 1-418 27-435 (437)
6 TIGR00959 ffh signal recogniti 100.0 6.5E-86 1.4E-90 680.2 32.3 396 1-398 30-428 (428)
7 COG0552 FtsY Signal recognitio 100.0 5.6E-44 1.2E-48 349.4 21.2 261 2-265 70-340 (340)
8 PRK14974 cell division protein 100.0 2.1E-40 4.5E-45 332.7 20.7 264 1-265 67-335 (336)
9 TIGR00064 ftsY signal recognit 100.0 3.3E-40 7.1E-45 324.0 21.1 260 1-264 7-272 (272)
10 PRK10416 signal recognition pa 100.0 4.1E-39 8.9E-44 322.3 21.3 262 1-266 49-316 (318)
11 PF00448 SRP54: SRP54-type pro 100.0 1.5E-35 3.3E-40 277.6 14.3 196 70-265 1-196 (196)
12 PF02978 SRP_SPB: Signal pepti 100.0 2.1E-33 4.5E-38 235.4 7.3 99 296-396 1-104 (104)
13 PRK11889 flhF flagellar biosyn 100.0 2.5E-31 5.4E-36 267.6 20.7 252 2-266 181-435 (436)
14 PRK12723 flagellar biosynthesi 100.0 5.1E-31 1.1E-35 269.3 20.2 253 2-267 112-371 (388)
15 PRK12726 flagellar biosynthesi 100.0 1.7E-30 3.6E-35 261.1 20.3 254 2-267 145-401 (407)
16 PRK14723 flhF flagellar biosyn 100.0 1.5E-30 3.3E-35 281.9 19.7 249 2-267 128-382 (767)
17 PRK12724 flagellar biosynthesi 100.0 3.2E-30 6.8E-35 262.9 18.3 253 2-266 158-417 (432)
18 KOG0781 Signal recognition par 100.0 4.3E-30 9.3E-35 258.5 15.3 255 1-255 302-577 (587)
19 PRK05703 flhF flagellar biosyn 100.0 8.1E-29 1.8E-33 257.2 19.3 248 2-267 164-416 (424)
20 PRK06995 flhF flagellar biosyn 100.0 2.8E-28 6E-33 254.3 19.3 248 2-267 199-450 (484)
21 PRK06731 flhF flagellar biosyn 100.0 4.6E-28 1E-32 236.7 19.1 251 2-266 16-269 (270)
22 PRK14722 flhF flagellar biosyn 99.9 2.9E-26 6.3E-31 232.7 18.9 251 3-267 78-340 (374)
23 PRK14721 flhF flagellar biosyn 99.9 9.3E-26 2E-30 232.2 18.5 246 3-267 136-385 (420)
24 COG1419 FlhF Flagellar GTP-bin 99.9 2.1E-25 4.5E-30 224.7 18.1 215 44-267 179-397 (407)
25 cd03115 SRP The signal recogni 99.9 1.3E-24 2.8E-29 199.6 15.6 172 72-243 2-173 (173)
26 PRK12727 flagellar biosynthesi 99.9 3E-24 6.5E-29 223.9 18.6 244 3-267 296-543 (559)
27 COG1797 CobB Cobyrinic acid a, 99.8 9.1E-19 2E-23 177.1 11.4 293 73-402 3-322 (451)
28 TIGR03499 FlhF flagellar biosy 99.7 8.7E-17 1.9E-21 159.2 14.0 144 2-162 137-282 (282)
29 cd02037 MRP-like MRP (Multiple 99.7 4.6E-16 1E-20 142.4 12.3 129 72-221 2-133 (169)
30 cd02117 NifH_like This family 99.7 9.7E-17 2.1E-21 152.3 7.2 167 71-246 1-210 (212)
31 PRK11670 antiporter inner memb 99.7 5.9E-16 1.3E-20 158.6 12.4 170 71-248 108-316 (369)
32 PRK13235 nifH nitrogenase redu 99.6 3.6E-16 7.8E-21 154.2 7.9 171 71-248 2-213 (274)
33 PRK13232 nifH nitrogenase redu 99.6 5.4E-16 1.2E-20 152.9 7.8 168 71-246 2-209 (273)
34 TIGR01007 eps_fam capsular exo 99.6 3.9E-15 8.4E-20 140.3 12.5 145 69-222 16-193 (204)
35 TIGR01969 minD_arch cell divis 99.6 1.8E-15 3.8E-20 146.5 10.0 164 72-246 3-195 (251)
36 TIGR03029 EpsG chain length de 99.6 2.6E-14 5.6E-19 140.9 15.8 142 68-218 101-274 (274)
37 PRK13233 nifH nitrogenase redu 99.6 1.9E-15 4.2E-20 149.0 7.8 163 71-239 3-207 (275)
38 cd02040 NifH NifH gene encodes 99.6 3E-15 6.4E-20 146.8 7.9 169 71-247 2-211 (270)
39 COG2894 MinD Septum formation 99.6 1E-14 2.2E-19 135.2 10.7 174 71-254 3-219 (272)
40 PRK13236 nitrogenase reductase 99.6 4.6E-15 1E-19 148.0 9.2 171 69-248 5-217 (296)
41 PRK09841 cryptic autophosphory 99.6 3.2E-14 7E-19 158.0 16.7 149 67-224 528-708 (726)
42 PRK13234 nifH nitrogenase redu 99.6 2.9E-15 6.3E-20 149.4 7.3 172 69-247 3-214 (295)
43 CHL00072 chlL photochlorophyll 99.6 7.1E-15 1.5E-19 146.2 9.7 162 73-246 3-204 (290)
44 PRK13185 chlL protochlorophyll 99.6 1.1E-14 2.4E-19 143.1 10.8 160 70-239 2-201 (270)
45 CHL00175 minD septum-site dete 99.6 1.7E-14 3.6E-19 142.7 11.6 169 69-247 14-218 (281)
46 PRK11519 tyrosine kinase; Prov 99.6 6.4E-14 1.4E-18 155.5 17.0 146 68-222 524-701 (719)
47 COG0489 Mrp ATPases involved i 99.6 2.4E-14 5.1E-19 140.5 12.0 145 70-222 57-232 (265)
48 COG3640 CooC CO dehydrogenase 99.6 1E-14 2.2E-19 136.9 8.6 166 72-251 2-223 (255)
49 TIGR01287 nifH nitrogenase iro 99.5 1.5E-14 3.3E-19 142.5 9.9 170 71-248 1-211 (275)
50 PF01656 CbiA: CobQ/CobB/MinD/ 99.5 2.3E-14 5E-19 133.0 10.3 143 72-222 1-161 (195)
51 cd02032 Bchl_like This family 99.5 1.8E-14 3.9E-19 141.5 9.8 164 72-247 2-205 (267)
52 PRK13230 nitrogenase reductase 99.5 1.5E-14 3.2E-19 143.1 9.0 170 71-248 2-212 (279)
53 TIGR01281 DPOR_bchL light-inde 99.5 1E-14 2.2E-19 143.2 7.7 158 72-239 2-199 (268)
54 cd03110 Fer4_NifH_child This p 99.5 3.5E-14 7.6E-19 130.9 10.6 158 72-245 2-178 (179)
55 PHA02518 ParA-like protein; Pr 99.5 9.3E-14 2E-18 130.9 13.3 136 72-222 2-146 (211)
56 TIGR03018 pepcterm_TyrKin exop 99.5 2.6E-13 5.6E-18 128.4 16.3 140 69-217 34-207 (207)
57 PRK13869 plasmid-partitioning 99.5 1E-13 2.2E-18 143.9 13.6 161 70-239 121-346 (405)
58 PRK13849 putative crown gall t 99.5 1.7E-13 3.8E-18 131.8 14.0 140 72-221 3-152 (231)
59 TIGR03371 cellulose_yhjQ cellu 99.5 5.5E-14 1.2E-18 135.8 10.5 144 72-223 3-182 (246)
60 TIGR01005 eps_transp_fam exopo 99.5 1.5E-13 3.2E-18 153.8 14.4 148 68-224 544-723 (754)
61 PHA02519 plasmid partition pro 99.5 1.4E-13 3.1E-18 141.8 12.0 162 68-239 104-327 (387)
62 KOG3022 Predicted ATPase, nucl 99.5 5.5E-14 1.2E-18 134.6 8.1 169 70-246 48-256 (300)
63 cd02036 MinD Bacterial cell di 99.5 9.9E-14 2.1E-18 127.1 8.6 140 72-239 2-146 (179)
64 PRK13231 nitrogenase reductase 99.5 6.8E-14 1.5E-18 137.1 8.0 161 70-239 2-198 (264)
65 PRK10818 cell division inhibit 99.5 3.2E-13 6.9E-18 132.7 11.9 168 71-248 3-214 (270)
66 cd02033 BchX Chlorophyllide re 99.5 3.5E-14 7.6E-19 142.8 4.7 169 68-250 29-243 (329)
67 TIGR01968 minD_bact septum sit 99.5 4.1E-13 8.8E-18 130.6 11.9 164 71-247 2-203 (261)
68 TIGR02016 BchX chlorophyllide 99.5 1.8E-13 3.9E-18 136.5 9.4 170 71-250 1-218 (296)
69 PRK01077 cobyrinic acid a,c-di 99.5 5.1E-13 1.1E-17 140.8 13.3 214 72-306 5-226 (451)
70 PRK13705 plasmid-partitioning 99.5 2.7E-13 5.8E-18 140.1 10.9 115 69-192 105-266 (388)
71 TIGR03453 partition_RepA plasm 99.4 4.9E-13 1.1E-17 138.4 12.0 43 69-111 103-146 (387)
72 cd02035 ArsA ArsA ATPase funct 99.4 1.2E-12 2.6E-17 124.9 12.3 145 72-221 1-182 (217)
73 cd00550 ArsA_ATPase Oxyanion-t 99.4 1.5E-12 3.3E-17 127.1 12.5 40 71-110 1-40 (254)
74 PRK13896 cobyrinic acid a,c-di 99.4 1.5E-12 3.2E-17 135.5 12.4 204 73-306 4-216 (433)
75 TIGR03815 CpaE_hom_Actino heli 99.4 3E-12 6.6E-17 129.2 13.8 160 69-239 92-283 (322)
76 TIGR00379 cobB cobyrinic acid 99.4 1.6E-12 3.4E-17 136.9 12.1 210 73-306 2-223 (449)
77 COG1192 Soj ATPases involved i 99.4 1.8E-12 3.9E-17 126.6 11.1 42 70-111 2-45 (259)
78 PF03308 ArgK: ArgK protein; 99.4 5.3E-13 1.1E-17 128.1 7.1 143 69-222 28-180 (266)
79 PRK10037 cell division protein 99.4 1.9E-12 4.2E-17 126.0 10.6 113 72-193 3-150 (250)
80 cd03114 ArgK-like The function 99.4 4.2E-12 9.2E-17 113.9 11.6 136 73-220 2-148 (148)
81 TIGR00750 lao LAO/AO transport 99.4 7.1E-12 1.5E-16 125.3 13.7 145 68-223 32-186 (300)
82 COG1703 ArgK Putative periplas 99.4 4.3E-12 9.3E-17 123.3 11.4 144 68-222 49-202 (323)
83 COG0455 flhG Antiactivator of 99.4 5.7E-12 1.2E-16 123.1 12.2 143 71-222 3-179 (262)
84 PF06564 YhjQ: YhjQ protein; 99.3 1.9E-11 4E-16 117.6 13.5 143 71-225 2-179 (243)
85 PF07015 VirC1: VirC1 protein; 99.3 1.1E-11 2.4E-16 117.6 11.4 90 70-165 2-96 (231)
86 PRK09435 membrane ATPase/prote 99.3 1.9E-11 4.2E-16 123.1 13.8 147 68-225 54-210 (332)
87 PRK06278 cobyrinic acid a,c-di 99.3 1.5E-11 3.2E-16 129.4 12.6 225 46-304 214-455 (476)
88 cd02038 FleN-like FleN is a me 99.3 3.6E-12 7.8E-17 113.1 6.6 104 73-222 3-110 (139)
89 PF00142 Fer4_NifH: 4Fe-4S iro 99.3 9.8E-12 2.1E-16 119.6 8.5 173 71-250 1-214 (273)
90 cd03111 CpaE_like This protein 99.3 2.3E-11 5E-16 102.9 9.7 72 73-193 3-75 (106)
91 cd02042 ParA ParA and ParB of 99.3 2.7E-11 5.8E-16 101.6 9.7 94 73-217 3-104 (104)
92 COG1348 NifH Nitrogenase subun 99.2 3.4E-11 7.4E-16 112.8 9.5 173 71-250 2-215 (278)
93 PF09140 MipZ: ATPase MipZ; I 99.2 2.4E-11 5.3E-16 115.9 8.5 93 72-165 3-111 (261)
94 PF02374 ArsA_ATPase: Anion-tr 99.2 5.7E-11 1.2E-15 118.9 10.3 40 71-110 2-41 (305)
95 PRK13768 GTPase; Provisional 99.2 1.4E-10 3.1E-15 113.2 10.5 41 70-110 2-42 (253)
96 COG1149 MinD superfamily P-loo 99.1 9.9E-11 2.1E-15 112.5 7.9 87 153-251 164-252 (284)
97 KOG1532 GTPase XAB1, interacts 99.1 2.1E-10 4.5E-15 109.9 7.8 125 68-193 17-158 (366)
98 COG0003 ArsA Predicted ATPase 99.1 1.7E-10 3.7E-15 115.6 7.3 41 70-110 2-42 (322)
99 cd01886 EF-G Elongation factor 99.0 2.4E-10 5.3E-15 112.6 6.4 218 73-315 2-242 (270)
100 PRK00090 bioD dithiobiotin syn 99.0 8E-10 1.7E-14 105.5 9.4 174 73-250 2-204 (222)
101 cd02034 CooC The accessory pro 99.0 1.5E-09 3.2E-14 93.4 9.6 90 73-165 2-99 (116)
102 cd04170 EF-G_bact Elongation f 99.0 5.6E-10 1.2E-14 109.8 7.5 160 150-315 61-240 (268)
103 cd04168 TetM_like Tet(M)-like 99.0 5.5E-10 1.2E-14 108.0 7.1 202 73-314 2-208 (237)
104 TIGR00347 bioD dethiobiotin sy 99.0 1.7E-09 3.7E-14 98.5 7.8 141 75-217 2-166 (166)
105 cd04169 RF3 RF3 subfamily. Pe 98.9 1.2E-09 2.7E-14 107.4 6.7 222 71-315 3-239 (267)
106 PF13614 AAA_31: AAA domain; P 98.9 3.7E-09 8.1E-14 94.8 9.3 115 71-193 1-151 (157)
107 COG1159 Era GTPase [General fu 98.9 3.3E-09 7.2E-14 103.5 8.0 187 71-307 7-205 (298)
108 PF13500 AAA_26: AAA domain; P 98.9 8.3E-09 1.8E-13 96.8 9.3 171 72-252 2-196 (199)
109 cd01983 Fer4_NifH The Fer4_Nif 98.8 1.8E-08 4E-13 81.8 8.7 34 72-105 1-34 (99)
110 PF02492 cobW: CobW/HypB/UreG, 98.8 3.7E-08 8.1E-13 91.0 11.1 146 72-222 2-154 (178)
111 COG0529 CysC Adenylylsulfate k 98.8 7.8E-09 1.7E-13 93.6 6.2 136 68-205 21-188 (197)
112 TIGR00313 cobQ cobyric acid sy 98.8 2.9E-08 6.3E-13 105.3 10.7 174 73-251 1-227 (475)
113 COG0378 HypB Ni2+-binding GTPa 98.8 6.2E-08 1.3E-12 89.3 10.8 144 69-227 11-160 (202)
114 PRK00784 cobyric acid synthase 98.8 2.2E-08 4.8E-13 106.7 9.0 176 72-253 4-232 (488)
115 TIGR00073 hypB hydrogenase acc 98.7 7.4E-08 1.6E-12 91.1 10.9 140 68-222 20-161 (207)
116 COG0480 FusA Translation elong 98.7 3E-08 6.5E-13 108.7 9.1 222 69-314 9-251 (697)
117 cd03109 DTBS Dethiobiotin synt 98.7 5E-08 1.1E-12 86.0 7.7 126 73-245 3-133 (134)
118 cd03112 CobW_like The function 98.7 1.3E-07 2.9E-12 85.7 10.6 144 72-221 2-158 (158)
119 COG0132 BioD Dethiobiotin synt 98.7 1.2E-07 2.6E-12 90.2 10.0 177 71-251 3-207 (223)
120 PRK12374 putative dithiobiotin 98.7 1.2E-07 2.7E-12 91.2 10.2 174 72-250 4-205 (231)
121 PF03029 ATP_bind_1: Conserved 98.7 1.9E-08 4.2E-13 97.3 4.5 36 75-110 1-36 (238)
122 PRK13886 conjugal transfer pro 98.7 1.5E-07 3.3E-12 90.6 10.6 42 72-113 4-46 (241)
123 COG1341 Predicted GTPase or GT 98.6 3E-07 6.4E-12 93.5 12.4 124 67-192 70-210 (398)
124 PRK05632 phosphate acetyltrans 98.6 1.6E-07 3.4E-12 104.1 11.1 141 72-222 4-155 (684)
125 PF01583 APS_kinase: Adenylyls 98.6 1.7E-07 3.6E-12 84.6 7.6 44 69-112 1-44 (156)
126 PRK00741 prfC peptide chain re 98.5 9.2E-08 2E-12 102.6 5.2 159 69-248 9-176 (526)
127 KOG2825 Putative arsenite-tran 98.5 3.3E-07 7.1E-12 87.2 7.5 41 70-110 19-59 (323)
128 TIGR00484 EF-G translation elo 98.5 4E-07 8.6E-12 101.2 9.3 129 69-222 9-140 (689)
129 PRK00007 elongation factor G; 98.4 8.9E-07 1.9E-11 98.4 11.0 130 69-223 9-141 (693)
130 PRK12739 elongation factor G; 98.4 9.8E-07 2.1E-11 98.1 11.2 130 69-223 7-139 (691)
131 PRK14493 putative bifunctional 98.4 4.7E-07 1E-11 89.3 7.5 139 71-221 2-152 (274)
132 COG1066 Sms Predicted ATP-depe 98.4 1.7E-06 3.6E-11 88.0 11.4 104 43-160 73-176 (456)
133 PRK10463 hydrogenase nickel in 98.4 1.3E-06 2.8E-11 86.4 10.4 138 68-222 102-243 (290)
134 PRK09361 radB DNA repair and r 98.4 2E-06 4.3E-11 82.2 11.3 107 49-163 9-118 (225)
135 cd01394 radB RadB. The archaea 98.4 2.6E-06 5.7E-11 80.9 11.7 53 50-109 6-58 (218)
136 TIGR02237 recomb_radB DNA repa 98.4 1.2E-06 2.6E-11 82.7 9.3 95 69-163 11-108 (209)
137 PF02421 FeoB_N: Ferrous iron 98.4 3.3E-07 7.2E-12 82.7 5.0 132 72-240 2-139 (156)
138 PRK11537 putative GTP-binding 98.4 9.9E-07 2.1E-11 89.0 8.7 150 70-223 4-164 (318)
139 COG4108 PrfC Peptide chain rel 98.4 1.1E-06 2.4E-11 89.6 8.6 158 69-251 11-181 (528)
140 cd01884 EF_Tu EF-Tu subfamily. 98.3 2.2E-06 4.8E-11 80.5 8.8 123 72-222 4-131 (195)
141 PRK12337 2-phosphoglycerate ki 98.3 1E-06 2.3E-11 91.8 6.8 101 4-110 185-291 (475)
142 TIGR00101 ureG urease accessor 98.3 5.9E-06 1.3E-10 77.8 11.1 140 70-223 1-151 (199)
143 PRK06067 flagellar accessory p 98.3 8.2E-06 1.8E-10 78.5 12.2 55 47-108 9-63 (234)
144 PRK08533 flagellar accessory p 98.3 3.1E-06 6.7E-11 81.5 9.0 113 46-165 7-130 (230)
145 smart00053 DYNc Dynamin, GTPas 98.3 3E-06 6.5E-11 82.0 8.7 76 153-228 125-211 (240)
146 PF00009 GTP_EFTU: Elongation 98.3 7.5E-07 1.6E-11 82.7 4.4 128 70-222 3-135 (188)
147 TIGR03878 thermo_KaiC_2 KaiC d 98.2 3.3E-06 7.2E-11 82.8 8.6 40 69-108 35-74 (259)
148 PRK00889 adenylylsulfate kinas 98.2 2.3E-06 5E-11 78.5 7.0 43 68-110 2-44 (175)
149 smart00382 AAA ATPases associa 98.2 1.1E-05 2.4E-10 68.9 10.7 91 70-166 2-92 (148)
150 TIGR00436 era GTP-binding prot 98.2 1.5E-06 3.2E-11 85.7 5.8 116 72-222 2-120 (270)
151 cd01120 RecA-like_NTPases RecA 98.2 1.1E-05 2.4E-10 71.7 10.7 93 72-164 1-97 (165)
152 TIGR02012 tigrfam_recA protein 98.2 1.1E-05 2.5E-10 81.1 11.8 106 44-164 35-145 (321)
153 PRK13351 elongation factor G; 98.2 6.5E-06 1.4E-10 91.6 11.0 146 69-239 7-157 (687)
154 PRK00089 era GTPase Era; Revie 98.2 8.5E-06 1.9E-10 81.0 10.8 116 71-222 6-126 (292)
155 cd04163 Era Era subfamily. Er 98.2 1E-05 2.2E-10 71.7 10.1 118 70-222 3-124 (168)
156 TIGR02655 circ_KaiC circadian 98.2 6.2E-06 1.3E-10 88.0 9.8 109 45-164 245-365 (484)
157 cd01124 KaiC KaiC is a circadi 98.2 1E-05 2.2E-10 74.5 9.8 38 72-109 1-38 (187)
158 PF06745 KaiC: KaiC; InterPro 98.2 1E-05 2.2E-10 77.4 10.0 108 50-164 6-127 (226)
159 KOG0635 Adenosine 5'-phosphosu 98.2 6.1E-06 1.3E-10 73.0 7.4 58 47-114 18-75 (207)
160 cd01121 Sms Sms (bacterial rad 98.2 1.5E-05 3.2E-10 82.1 11.4 105 44-163 63-169 (372)
161 TIGR00503 prfC peptide chain r 98.1 2.1E-06 4.5E-11 92.3 5.3 133 69-222 10-145 (527)
162 PHA02542 41 41 helicase; Provi 98.1 8.1E-05 1.8E-09 79.0 16.9 55 49-110 176-230 (473)
163 TIGR03877 thermo_KaiC_1 KaiC d 98.1 3.3E-05 7.1E-10 74.7 12.6 52 50-108 8-59 (237)
164 cd00983 recA RecA is a bacter 98.1 2.2E-05 4.8E-10 79.1 11.7 58 43-107 34-92 (325)
165 PRK12740 elongation factor G; 98.1 4.3E-06 9.4E-11 92.7 6.6 140 76-239 1-144 (668)
166 PRK09354 recA recombinase A; P 98.1 1.1E-05 2.4E-10 81.9 8.9 105 44-164 40-150 (349)
167 PRK04220 2-phosphoglycerate ki 98.1 8.5E-06 1.8E-10 81.0 7.4 101 4-110 22-128 (301)
168 PRK11823 DNA repair protein Ra 98.1 2.5E-05 5.5E-10 82.4 11.2 104 45-164 62-168 (446)
169 cd00881 GTP_translation_factor 98.1 1.8E-05 3.8E-10 72.4 8.9 124 73-223 2-128 (189)
170 PRK04296 thymidine kinase; Pro 98.0 1.7E-05 3.7E-10 74.1 8.5 87 71-165 3-91 (190)
171 PRK04328 hypothetical protein; 98.0 2.9E-05 6.2E-10 75.7 10.3 52 50-108 10-61 (249)
172 COG1160 Predicted GTPases [Gen 98.0 1.8E-05 3.9E-10 81.7 9.1 117 71-222 4-125 (444)
173 COG0523 Putative GTPases (G3E 98.0 1.3E-05 2.9E-10 80.8 8.0 148 71-225 2-161 (323)
174 PRK15494 era GTPase Era; Provi 98.0 6.7E-06 1.5E-10 83.8 5.7 117 70-222 52-173 (339)
175 COG1618 Predicted nucleotide k 98.0 4.7E-05 1E-09 68.4 9.7 37 70-106 5-41 (179)
176 TIGR00416 sms DNA repair prote 98.0 4.2E-05 9E-10 80.9 11.2 104 45-163 76-181 (454)
177 TIGR00176 mobB molybdopterin-g 98.0 1.4E-05 3.1E-10 72.2 6.4 37 72-108 1-37 (155)
178 KOG1533 Predicted GTPase [Gene 98.0 2E-05 4.3E-10 74.7 7.4 38 73-110 5-42 (290)
179 TIGR02475 CobW cobalamin biosy 98.0 3.8E-05 8.3E-10 78.3 10.2 120 71-194 5-135 (341)
180 KOG0465 Mitochondrial elongati 98.0 6.8E-06 1.5E-10 86.8 4.6 222 69-314 38-281 (721)
181 TIGR00490 aEF-2 translation el 98.0 1.9E-05 4.1E-10 88.2 8.2 140 48-222 5-151 (720)
182 COG0468 RecA RecA/RadA recombi 97.9 7.7E-05 1.7E-09 73.6 11.5 109 48-165 45-154 (279)
183 TIGR01394 TypA_BipA GTP-bindin 97.9 8E-06 1.7E-10 89.0 5.0 123 71-222 2-129 (594)
184 cd04166 CysN_ATPS CysN_ATPS su 97.9 2.5E-05 5.4E-10 73.9 7.7 67 151-223 75-144 (208)
185 cd01393 recA_like RecA is a b 97.9 4.1E-05 8.9E-10 72.9 9.3 52 50-108 6-63 (226)
186 cd01122 GP4d_helicase GP4d_hel 97.9 8.1E-05 1.8E-09 73.1 11.5 40 69-108 29-69 (271)
187 cd01885 EF2 EF2 (for archaea a 97.9 3.1E-05 6.7E-10 74.2 8.0 65 151-222 71-138 (222)
188 TIGR02238 recomb_DMC1 meiotic 97.9 9.1E-05 2E-09 74.6 11.8 143 11-164 40-203 (313)
189 PRK05973 replicative DNA helic 97.9 7E-05 1.5E-09 72.3 10.5 41 69-109 63-103 (237)
190 cd04167 Snu114p Snu114p subfam 97.9 3E-05 6.4E-10 73.6 7.7 26 71-96 1-26 (213)
191 cd01883 EF1_alpha Eukaryotic e 97.9 2.2E-05 4.8E-10 74.9 6.8 23 73-95 2-24 (219)
192 cd00984 DnaB_C DnaB helicase C 97.9 0.00015 3.2E-09 69.8 12.6 41 69-109 12-53 (242)
193 TIGR03880 KaiC_arch_3 KaiC dom 97.9 0.0001 2.3E-09 70.3 11.2 52 50-108 3-54 (224)
194 PRK10751 molybdopterin-guanine 97.9 4.1E-05 8.8E-10 70.4 7.8 39 69-107 5-43 (173)
195 PRK09554 feoB ferrous iron tra 97.9 0.00011 2.3E-09 82.5 12.6 134 71-241 4-147 (772)
196 PLN03127 Elongation factor Tu; 97.9 7.4E-05 1.6E-09 78.9 10.4 125 69-222 60-190 (447)
197 TIGR03574 selen_PSTK L-seryl-t 97.9 4.3E-05 9.4E-10 74.3 7.9 39 72-110 1-39 (249)
198 PTZ00035 Rad51 protein; Provis 97.9 0.00016 3.6E-09 73.5 12.4 98 11-116 62-171 (337)
199 PF08433 KTI12: Chromatin asso 97.9 8.2E-05 1.8E-09 73.4 9.9 106 72-193 3-108 (270)
200 KOG0464 Elongation factor G [T 97.8 7.8E-06 1.7E-10 82.6 2.4 145 69-237 36-184 (753)
201 cd04165 GTPBP1_like GTPBP1-lik 97.8 2.7E-05 6E-10 74.7 6.1 138 73-222 2-151 (224)
202 COG4963 CpaE Flp pilus assembl 97.8 0.00019 4.2E-09 72.7 12.2 160 69-238 103-299 (366)
203 CHL00071 tufA elongation facto 97.8 5.5E-05 1.2E-09 79.0 8.6 128 69-223 11-142 (409)
204 COG1492 CobQ Cobyric acid synt 97.8 1.4E-05 3E-10 83.4 4.1 169 72-251 3-230 (486)
205 PRK05541 adenylylsulfate kinas 97.8 0.00018 3.8E-09 66.0 10.8 42 68-109 5-46 (176)
206 PLN00116 translation elongatio 97.8 2.2E-05 4.8E-10 89.1 5.5 137 69-222 18-163 (843)
207 TIGR03881 KaiC_arch_4 KaiC dom 97.8 0.00026 5.6E-09 67.7 12.1 52 50-108 7-58 (229)
208 PRK14494 putative molybdopteri 97.8 3.8E-05 8.2E-10 73.7 6.2 36 71-106 2-37 (229)
209 PRK12736 elongation factor Tu; 97.8 8.8E-05 1.9E-09 77.1 9.5 127 69-222 11-141 (394)
210 PF13481 AAA_25: AAA domain; P 97.8 0.0002 4.3E-09 66.4 10.8 40 70-109 32-81 (193)
211 PLN00043 elongation factor 1-a 97.8 3.5E-05 7.7E-10 81.3 6.4 133 70-222 7-158 (447)
212 PTZ00416 elongation factor 2; 97.8 1.7E-05 3.7E-10 89.9 4.3 136 69-222 18-157 (836)
213 PRK06526 transposase; Provisio 97.8 0.00018 3.8E-09 70.4 10.8 137 6-170 40-177 (254)
214 PF00154 RecA: recA bacterial 97.8 7.2E-05 1.6E-09 75.2 8.2 109 43-165 32-144 (322)
215 PRK00049 elongation factor Tu; 97.8 6.2E-05 1.3E-09 78.4 8.0 125 70-222 12-141 (396)
216 PRK07560 elongation factor EF- 97.8 2.4E-05 5.2E-10 87.6 5.1 141 47-222 5-152 (731)
217 PF13401 AAA_22: AAA domain; P 97.8 0.00016 3.5E-09 62.4 9.2 106 69-179 3-113 (131)
218 PRK06696 uridine kinase; Valid 97.8 4.6E-05 1E-09 72.9 6.2 43 68-110 20-62 (223)
219 cd01853 Toc34_like Toc34-like 97.7 0.00014 3E-09 70.9 9.5 23 69-91 30-52 (249)
220 COG0467 RAD55 RecA-superfamily 97.7 0.00047 1E-08 67.4 13.2 58 52-116 12-69 (260)
221 TIGR02034 CysN sulfate adenyly 97.7 7.9E-05 1.7E-09 77.8 8.2 64 151-222 78-146 (406)
222 PLN03187 meiotic recombination 97.7 0.00045 9.7E-09 70.4 13.3 98 11-116 70-179 (344)
223 PTZ00141 elongation factor 1- 97.7 5.8E-05 1.3E-09 79.7 6.9 66 150-221 82-157 (446)
224 cd01852 AIG1 AIG1 (avrRpt2-ind 97.7 0.0001 2.2E-09 68.8 7.9 116 72-221 2-128 (196)
225 PRK08233 hypothetical protein; 97.7 7.7E-05 1.7E-09 68.3 6.8 36 70-107 3-38 (182)
226 KOG0462 Elongation factor-type 97.7 4.6E-05 9.9E-10 79.9 5.7 130 69-223 59-191 (650)
227 COG4240 Predicted kinase [Gene 97.7 0.00015 3.2E-09 68.6 8.5 78 40-118 21-99 (300)
228 cd01887 IF2_eIF5B IF2/eIF5B (i 97.7 0.00011 2.3E-09 66.0 7.3 20 72-91 2-21 (168)
229 PRK10218 GTP-binding protein; 97.7 3.9E-05 8.5E-10 83.7 5.2 123 69-222 4-133 (607)
230 TIGR03600 phage_DnaB phage rep 97.7 0.00098 2.1E-08 69.9 15.5 146 69-221 193-355 (421)
231 PF01926 MMR_HSR1: 50S ribosom 97.7 0.00015 3.2E-09 61.6 7.6 19 73-91 2-20 (116)
232 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00012 2.7E-09 70.1 8.0 52 50-108 6-63 (235)
233 PRK06762 hypothetical protein; 97.7 0.00011 2.3E-09 66.7 7.1 38 70-110 2-39 (166)
234 PRK12735 elongation factor Tu; 97.7 0.00016 3.5E-09 75.2 9.3 126 70-222 12-141 (396)
235 PRK07667 uridine kinase; Provi 97.7 7.1E-05 1.5E-09 70.1 5.9 41 69-109 16-56 (193)
236 cd01894 EngA1 EngA1 subfamily. 97.7 0.00015 3.2E-09 64.0 7.7 73 151-223 43-119 (157)
237 TIGR02655 circ_KaiC circadian 97.6 0.00036 7.8E-09 74.5 11.7 52 50-108 8-60 (484)
238 cd00880 Era_like Era (E. coli 97.6 9.5E-05 2.1E-09 64.4 6.1 69 152-223 44-118 (163)
239 PLN03126 Elongation factor Tu; 97.6 0.0002 4.4E-09 76.1 9.6 128 70-223 81-211 (478)
240 PRK05124 cysN sulfate adenylyl 97.6 5.1E-05 1.1E-09 80.8 5.0 26 69-94 26-51 (474)
241 cd01895 EngA2 EngA2 subfamily. 97.6 0.00025 5.5E-09 63.3 8.9 22 70-91 2-23 (174)
242 COG1763 MobB Molybdopterin-gua 97.6 7.4E-05 1.6E-09 67.8 5.3 39 70-108 2-40 (161)
243 PRK08760 replicative DNA helic 97.6 0.0012 2.6E-08 70.4 15.3 42 69-110 228-270 (476)
244 cd01878 HflX HflX subfamily. 97.6 0.00021 4.4E-09 66.9 8.5 21 71-91 42-62 (204)
245 cd01889 SelB_euk SelB subfamil 97.6 0.00016 3.4E-09 67.3 7.6 65 151-222 66-133 (192)
246 PF13671 AAA_33: AAA domain; P 97.6 0.00021 4.6E-09 62.7 7.9 32 72-108 1-32 (143)
247 PF06414 Zeta_toxin: Zeta toxi 97.6 0.0002 4.3E-09 67.2 8.2 90 68-164 13-104 (199)
248 cd04164 trmE TrmE (MnmE, ThdF, 97.6 0.00068 1.5E-08 59.6 11.1 71 152-224 48-122 (157)
249 PRK15453 phosphoribulokinase; 97.6 0.00019 4.1E-09 70.7 7.9 43 69-111 4-46 (290)
250 cd01888 eIF2_gamma eIF2-gamma 97.6 0.00011 2.5E-09 69.1 6.2 21 72-92 2-22 (203)
251 PRK09302 circadian clock prote 97.6 0.0005 1.1E-08 73.9 11.9 57 45-108 255-311 (509)
252 TIGR00485 EF-Tu translation el 97.6 0.00029 6.2E-09 73.4 9.6 124 70-222 12-141 (394)
253 cd01890 LepA LepA subfamily. 97.6 0.00015 3.3E-09 65.9 6.7 23 71-93 1-23 (179)
254 TIGR00991 3a0901s02IAP34 GTP-b 97.6 0.00042 9.1E-09 69.3 10.1 52 43-104 15-66 (313)
255 TIGR00455 apsK adenylylsulfate 97.6 0.00032 6.8E-09 64.9 8.6 43 68-110 16-58 (184)
256 PRK04301 radA DNA repair and r 97.6 0.00033 7.1E-09 70.7 9.4 62 48-116 87-155 (317)
257 TIGR00665 DnaB replicative DNA 97.6 0.0026 5.6E-08 67.0 16.5 42 69-110 194-236 (434)
258 COG2874 FlaH Predicted ATPases 97.5 0.0005 1.1E-08 64.6 9.5 115 44-165 9-136 (235)
259 PRK05433 GTP-binding protein L 97.5 0.00023 4.9E-09 77.9 8.5 128 69-222 6-139 (600)
260 KOG1534 Putative transcription 97.5 0.00073 1.6E-08 63.3 10.5 37 73-109 6-42 (273)
261 PRK14495 putative molybdopteri 97.5 0.00016 3.4E-09 75.1 6.7 37 71-107 2-38 (452)
262 cd02029 PRK_like Phosphoribulo 97.5 0.0002 4.4E-09 70.0 7.1 40 72-111 1-40 (277)
263 cd04171 SelB SelB subfamily. 97.5 0.00031 6.7E-09 62.5 7.8 20 72-91 2-21 (164)
264 PRK14489 putative bifunctional 97.5 0.00018 3.8E-09 74.2 7.0 41 69-109 204-244 (366)
265 PRK09165 replicative DNA helic 97.5 0.0019 4.2E-08 69.2 15.0 42 69-110 216-272 (497)
266 PRK05595 replicative DNA helic 97.5 0.001 2.3E-08 70.3 12.9 41 69-109 200-241 (444)
267 cd01882 BMS1 Bms1. Bms1 is an 97.5 0.0004 8.7E-09 66.6 8.8 26 68-93 37-62 (225)
268 PRK03846 adenylylsulfate kinas 97.5 0.00011 2.5E-09 68.8 4.6 43 68-110 22-64 (198)
269 PRK09302 circadian clock prote 97.5 0.00076 1.6E-08 72.5 11.5 59 45-110 13-72 (509)
270 cd04160 Arfrp1 Arfrp1 subfamil 97.5 0.0002 4.4E-09 64.2 6.0 20 73-92 2-21 (167)
271 PF03796 DnaB_C: DnaB-like hel 97.5 0.0012 2.7E-08 64.4 12.0 128 50-192 7-138 (259)
272 PRK05748 replicative DNA helic 97.5 0.0032 6.9E-08 66.7 15.7 42 69-110 202-244 (448)
273 PF02881 SRP54_N: SRP54-type p 97.5 0.00013 2.8E-09 57.5 3.9 49 1-52 27-75 (75)
274 PRK05506 bifunctional sulfate 97.5 0.00016 3.4E-09 79.9 5.9 24 72-95 26-49 (632)
275 TIGR02236 recomb_radA DNA repa 97.5 0.00055 1.2E-08 68.8 9.4 59 49-114 81-146 (310)
276 PF08423 Rad51: Rad51; InterP 97.5 0.00088 1.9E-08 65.6 10.5 113 45-164 20-145 (256)
277 PRK12317 elongation factor 1-a 97.4 0.00029 6.4E-09 74.0 7.6 25 70-94 6-30 (425)
278 TIGR01393 lepA GTP-binding pro 97.4 0.00036 7.8E-09 76.3 8.5 130 70-222 3-135 (595)
279 cd01879 FeoB Ferrous iron tran 97.4 0.00027 6E-09 62.5 6.3 70 152-222 42-114 (158)
280 cd01891 TypA_BipA TypA (tyrosi 97.4 0.00043 9.2E-09 64.4 7.8 23 70-92 2-24 (194)
281 TIGR00345 arsA arsenite-activa 97.4 0.0013 2.8E-08 65.4 11.6 25 86-110 1-25 (284)
282 COG1084 Predicted GTPase [Gene 97.4 0.00033 7.1E-09 69.7 7.0 117 70-222 168-293 (346)
283 TIGR03594 GTPase_EngA ribosome 97.4 0.00045 9.8E-09 72.4 8.6 115 73-223 2-121 (429)
284 cd01125 repA Hexameric Replica 97.4 0.00075 1.6E-08 65.2 9.4 40 71-110 2-53 (239)
285 PLN02974 adenosylmethionine-8- 97.4 0.00051 1.1E-08 77.4 9.2 35 71-105 28-63 (817)
286 PRK00093 GTP-binding protein D 97.4 0.00051 1.1E-08 72.2 8.8 116 72-223 3-123 (435)
287 KOG2743 Cobalamin synthesis pr 97.4 0.00086 1.9E-08 65.8 9.3 120 69-193 56-188 (391)
288 COG4088 Predicted nucleotide k 97.4 0.0006 1.3E-08 63.8 7.9 37 71-107 2-38 (261)
289 cd02028 UMPK_like Uridine mono 97.4 0.00014 3.1E-09 67.2 3.9 39 72-110 1-39 (179)
290 TIGR03598 GTPase_YsxC ribosome 97.4 0.0011 2.3E-08 60.9 9.7 23 69-91 17-39 (179)
291 PRK09866 hypothetical protein; 97.4 0.0016 3.5E-08 70.5 12.2 69 152-222 229-302 (741)
292 PRK14491 putative bifunctional 97.4 0.00029 6.4E-09 76.9 6.8 39 70-108 10-48 (597)
293 PRK05636 replicative DNA helic 97.4 0.0039 8.5E-08 66.8 15.2 43 69-111 264-307 (505)
294 PRK05439 pantothenate kinase; 97.4 0.00034 7.5E-09 70.2 6.7 43 68-110 84-128 (311)
295 cd02027 APSK Adenosine 5'-phos 97.4 0.00013 2.7E-09 65.5 3.2 40 72-111 1-40 (149)
296 PF03205 MobB: Molybdopterin g 97.4 0.00021 4.6E-09 63.5 4.5 37 72-108 2-39 (140)
297 PF13245 AAA_19: Part of AAA d 97.4 0.00024 5.3E-09 56.3 4.3 38 70-107 10-51 (76)
298 PHA02530 pseT polynucleotide k 97.3 0.00093 2E-08 66.5 9.3 37 70-110 2-38 (300)
299 PRK09519 recA DNA recombinatio 97.3 0.0015 3.2E-08 72.8 11.6 105 44-164 40-150 (790)
300 PF13479 AAA_24: AAA domain 97.3 0.00043 9.2E-09 65.8 6.5 77 69-164 2-80 (213)
301 PRK07952 DNA replication prote 97.3 0.00097 2.1E-08 64.8 9.0 36 71-106 100-135 (244)
302 cd01898 Obg Obg subfamily. Th 97.3 0.00073 1.6E-08 60.7 7.7 19 73-91 3-21 (170)
303 PF13207 AAA_17: AAA domain; P 97.3 0.0002 4.4E-09 61.0 3.8 32 72-108 1-32 (121)
304 PF00350 Dynamin_N: Dynamin fa 97.3 0.00041 8.9E-09 62.6 6.0 19 73-91 1-19 (168)
305 COG1217 TypA Predicted membran 97.3 0.00048 1E-08 71.2 6.8 124 70-222 5-133 (603)
306 KOG1423 Ras-like GTPase ERA [C 97.3 0.00038 8.2E-09 68.5 5.8 157 71-267 73-258 (379)
307 PF13604 AAA_30: AAA domain; P 97.3 0.00092 2E-08 62.7 8.3 112 70-193 18-131 (196)
308 PRK08506 replicative DNA helic 97.3 0.0027 5.9E-08 67.6 12.8 42 69-110 191-232 (472)
309 TIGR01618 phage_P_loop phage n 97.3 0.00053 1.1E-08 65.5 6.6 81 69-164 11-93 (220)
310 PRK05480 uridine/cytidine kina 97.3 0.0003 6.5E-09 66.4 5.0 41 68-110 4-44 (209)
311 TIGR03575 selen_PSTK_euk L-ser 97.3 0.0019 4.1E-08 65.7 11.0 38 73-110 2-40 (340)
312 PF10662 PduV-EutP: Ethanolami 97.3 0.00061 1.3E-08 60.5 6.5 62 156-222 39-102 (143)
313 PRK03003 GTP-binding protein D 97.3 0.0014 3.1E-08 69.8 10.5 118 69-222 210-335 (472)
314 KOG1805 DNA replication helica 97.3 0.00074 1.6E-08 75.1 8.3 56 71-129 686-741 (1100)
315 PF00485 PRK: Phosphoribulokin 97.3 0.00027 5.9E-09 66.0 4.4 39 72-110 1-43 (194)
316 cd00009 AAA The AAA+ (ATPases 97.3 0.00085 1.8E-08 57.7 7.3 41 70-110 19-59 (151)
317 cd03116 MobB Molybdenum is an 97.3 0.00037 8.1E-09 63.3 5.0 39 71-109 2-40 (159)
318 KOG2749 mRNA cleavage and poly 97.3 0.0033 7.2E-08 63.2 12.0 43 68-111 102-144 (415)
319 PRK03003 GTP-binding protein D 97.3 0.00084 1.8E-08 71.5 8.5 117 70-222 38-159 (472)
320 PLN03186 DNA repair protein RA 97.3 0.0014 3.1E-08 66.7 9.8 63 48-117 108-177 (342)
321 PRK00093 GTP-binding protein D 97.3 0.0013 2.9E-08 69.1 9.9 118 69-222 172-297 (435)
322 TIGR00708 cobA cob(I)alamin ad 97.3 0.0019 4.1E-08 59.3 9.6 36 70-106 6-41 (173)
323 PRK06761 hypothetical protein; 97.3 0.002 4.3E-08 63.8 10.4 42 70-111 3-45 (282)
324 COG1160 Predicted GTPases [Gen 97.3 0.0015 3.2E-08 67.9 9.7 144 45-224 153-304 (444)
325 TIGR03594 GTPase_EngA ribosome 97.2 0.0019 4E-08 67.8 10.6 22 70-91 172-193 (429)
326 cd00154 Rab Rab family. Rab G 97.2 0.00047 1E-08 60.4 5.0 19 73-91 3-21 (159)
327 TIGR03156 GTP_HflX GTP-binding 97.2 0.0016 3.4E-08 66.8 9.4 116 71-222 190-314 (351)
328 PRK06749 replicative DNA helic 97.2 0.0034 7.4E-08 66.0 12.0 147 69-221 185-351 (428)
329 PF09439 SRPRB: Signal recogni 97.2 0.0011 2.5E-08 61.3 7.2 86 70-195 3-88 (181)
330 PRK09270 nucleoside triphospha 97.2 0.00063 1.4E-08 65.4 5.7 43 68-110 31-74 (229)
331 PRK05306 infB translation init 97.2 0.00085 1.8E-08 75.2 7.4 23 68-90 288-310 (787)
332 TIGR00483 EF-1_alpha translati 97.1 0.00087 1.9E-08 70.5 7.1 26 69-94 6-31 (426)
333 cd01897 NOG NOG1 is a nucleola 97.1 0.0017 3.7E-08 58.2 8.0 20 72-91 2-21 (168)
334 PRK09518 bifunctional cytidyla 97.1 0.0023 5E-08 71.7 10.6 117 70-222 450-574 (712)
335 PRK07003 DNA polymerase III su 97.1 0.0096 2.1E-07 66.0 14.9 27 69-95 37-63 (830)
336 TIGR02239 recomb_RAD51 DNA rep 97.1 0.0025 5.4E-08 64.4 9.7 59 47-112 80-145 (316)
337 cd00878 Arf_Arl Arf (ADP-ribos 97.1 0.0008 1.7E-08 59.8 5.6 66 152-223 42-114 (158)
338 PRK11058 GTPase HflX; Provisio 97.1 0.002 4.4E-08 67.7 9.3 115 72-222 199-322 (426)
339 PF00004 AAA: ATPase family as 97.1 0.001 2.2E-08 57.0 6.1 68 73-163 1-69 (132)
340 cd02019 NK Nucleoside/nucleoti 97.1 0.00051 1.1E-08 53.2 3.7 33 72-106 1-33 (69)
341 COG0370 FeoB Fe2+ transport sy 97.1 0.0007 1.5E-08 73.3 5.9 133 72-241 5-143 (653)
342 PF04548 AIG1: AIG1 family; I 97.1 0.002 4.3E-08 61.2 8.4 43 151-193 47-94 (212)
343 PRK05506 bifunctional sulfate 97.1 0.0012 2.6E-08 72.9 7.8 44 69-112 459-502 (632)
344 PRK14490 putative bifunctional 97.1 0.00087 1.9E-08 69.1 6.3 39 69-108 4-42 (369)
345 COG2074 2-phosphoglycerate kin 97.1 0.00095 2.1E-08 64.2 5.9 98 4-108 20-123 (299)
346 smart00178 SAR Sar1p-like memb 97.1 0.0011 2.4E-08 61.2 6.3 21 71-91 18-38 (184)
347 cd02021 GntK Gluconate kinase 97.1 0.0043 9.3E-08 55.1 9.7 36 72-112 1-36 (150)
348 cd00544 CobU Adenosylcobinamid 97.1 0.0023 4.9E-08 58.7 8.0 33 72-107 1-33 (169)
349 TIGR00231 small_GTP small GTP- 97.0 0.0019 4.2E-08 56.0 7.2 20 72-91 3-22 (161)
350 cd01864 Rab19 Rab19 subfamily. 97.0 0.0011 2.3E-08 59.6 5.6 21 71-91 4-24 (165)
351 PRK08181 transposase; Validate 97.0 0.0016 3.5E-08 64.2 7.3 79 70-169 106-184 (269)
352 PF01695 IstB_IS21: IstB-like 97.0 0.0021 4.6E-08 59.4 7.7 76 70-166 47-122 (178)
353 cd04139 RalA_RalB RalA/RalB su 97.0 0.0015 3.2E-08 58.1 6.5 20 72-91 2-21 (164)
354 PRK01184 hypothetical protein; 97.0 0.0015 3.1E-08 60.3 6.6 34 71-110 2-36 (184)
355 PRK05800 cobU adenosylcobinami 97.0 0.0015 3.3E-08 60.0 6.5 85 72-164 3-88 (170)
356 PRK12298 obgE GTPase CgtA; Rev 97.0 0.0021 4.5E-08 66.8 8.3 21 71-91 160-180 (390)
357 TIGR00450 mnmE_trmE_thdF tRNA 97.0 0.0026 5.5E-08 67.2 9.1 72 151-223 249-324 (442)
358 cd02025 PanK Pantothenate kina 97.0 0.00061 1.3E-08 65.2 4.0 39 72-110 1-41 (220)
359 cd04161 Arl2l1_Arl13_like Arl2 97.0 0.0022 4.8E-08 58.1 7.4 66 151-223 41-114 (167)
360 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0024 5.3E-08 60.6 8.0 39 69-107 37-75 (226)
361 PRK07773 replicative DNA helic 97.0 0.012 2.7E-07 67.4 15.0 41 69-109 216-257 (886)
362 PRK05291 trmE tRNA modificatio 97.0 0.0017 3.8E-08 68.7 7.5 138 45-222 192-334 (449)
363 cd04105 SR_beta Signal recogni 97.0 0.0013 2.9E-08 61.9 5.9 20 72-91 2-21 (203)
364 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.0 0.00089 1.9E-08 61.1 4.5 21 71-91 16-36 (174)
365 CHL00189 infB translation init 97.0 0.0018 3.9E-08 72.1 7.6 23 69-91 243-265 (742)
366 PRK12297 obgE GTPase CgtA; Rev 97.0 0.0025 5.4E-08 66.8 8.3 21 71-91 159-179 (424)
367 cd04156 ARLTS1 ARLTS1 subfamil 97.0 0.0023 5.1E-08 56.8 7.1 19 73-91 2-20 (160)
368 COG0563 Adk Adenylate kinase a 97.0 0.00086 1.9E-08 62.1 4.3 37 72-113 2-39 (178)
369 PRK04000 translation initiatio 96.9 0.0019 4.1E-08 67.6 7.3 23 69-91 8-30 (411)
370 cd04154 Arl2 Arl2 subfamily. 96.9 0.0017 3.8E-08 58.9 6.3 21 71-91 15-35 (173)
371 cd04155 Arl3 Arl3 subfamily. 96.9 0.0021 4.6E-08 58.0 6.7 22 70-91 14-35 (173)
372 TIGR00487 IF-2 translation ini 96.9 0.002 4.2E-08 70.4 7.6 23 69-91 86-108 (587)
373 PRK06835 DNA replication prote 96.9 0.0028 6E-08 64.3 8.1 88 71-177 184-271 (329)
374 cd02023 UMPK Uridine monophosp 96.9 0.00075 1.6E-08 63.1 3.8 37 72-110 1-37 (198)
375 cd04113 Rab4 Rab4 subfamily. 96.9 0.0017 3.7E-08 57.9 5.9 19 73-91 3-21 (161)
376 PRK09183 transposase/IS protei 96.9 0.0048 1E-07 60.5 9.6 37 70-106 102-138 (259)
377 COG2019 AdkA Archaeal adenylat 96.9 0.0019 4.1E-08 58.5 6.0 25 70-94 4-28 (189)
378 PRK08006 replicative DNA helic 96.9 0.02 4.3E-07 61.0 14.8 42 69-110 223-265 (471)
379 PRK00411 cdc6 cell division co 96.9 0.068 1.5E-06 55.3 18.5 42 69-110 54-97 (394)
380 PLN03118 Rab family protein; P 96.9 0.0013 2.8E-08 62.1 5.2 21 71-91 15-35 (211)
381 PRK05986 cob(I)alamin adenolsy 96.9 0.0043 9.2E-08 57.9 8.5 36 71-106 23-58 (191)
382 cd00876 Ras Ras family. The R 96.9 0.0015 3.2E-08 57.8 5.3 19 73-91 2-20 (160)
383 cd04137 RheB Rheb (Ras Homolog 96.9 0.0021 4.5E-08 58.6 6.4 21 71-91 2-22 (180)
384 PRK07004 replicative DNA helic 96.9 0.012 2.7E-07 62.4 13.1 44 69-112 212-256 (460)
385 cd04101 RabL4 RabL4 (Rab-like4 96.9 0.0015 3.3E-08 58.3 5.4 64 152-222 51-120 (164)
386 cd04124 RabL2 RabL2 subfamily. 96.9 0.0016 3.5E-08 58.4 5.6 65 151-222 47-117 (161)
387 COG1484 DnaC DNA replication p 96.9 0.0039 8.5E-08 61.0 8.7 79 69-167 104-182 (254)
388 PRK05642 DNA replication initi 96.9 0.004 8.6E-08 60.1 8.6 37 71-107 46-82 (234)
389 PRK13695 putative NTPase; Prov 96.9 0.0094 2E-07 54.5 10.8 31 72-102 2-32 (174)
390 PRK05537 bifunctional sulfate 96.9 0.0012 2.7E-08 71.7 5.6 43 68-110 390-433 (568)
391 COG1072 CoaA Panthothenate kin 96.9 0.0016 3.4E-08 63.6 5.6 44 67-110 79-124 (283)
392 COG0050 TufB GTPases - transla 96.9 0.0037 8E-08 61.4 8.0 129 68-222 9-141 (394)
393 TIGR00554 panK_bact pantothena 96.9 0.0012 2.6E-08 65.7 4.9 43 68-110 60-104 (290)
394 PRK15467 ethanolamine utilizat 96.9 0.0028 6.1E-08 57.2 6.9 63 157-222 41-104 (158)
395 PRK06904 replicative DNA helic 96.9 0.022 4.9E-07 60.6 14.8 147 69-221 220-385 (472)
396 cd01131 PilT Pilus retraction 96.9 0.01 2.2E-07 55.7 10.9 33 72-104 3-36 (198)
397 PRK08727 hypothetical protein; 96.9 0.0051 1.1E-07 59.3 9.0 37 71-107 42-78 (233)
398 cd04157 Arl6 Arl6 subfamily. 96.9 0.0026 5.7E-08 56.5 6.5 65 151-222 43-117 (162)
399 cd04104 p47_IIGP_like p47 (47- 96.9 0.004 8.7E-08 58.3 8.0 20 72-91 3-22 (197)
400 cd01876 YihA_EngB The YihA (En 96.8 0.0037 8.1E-08 55.2 7.4 19 73-91 2-20 (170)
401 TIGR00475 selB selenocysteine- 96.8 0.0028 6E-08 69.3 7.8 63 152-222 49-116 (581)
402 smart00175 RAB Rab subfamily o 96.8 0.0018 3.8E-08 57.6 5.3 19 73-91 3-21 (164)
403 PRK12296 obgE GTPase CgtA; Rev 96.8 0.0053 1.1E-07 65.5 9.6 22 70-91 159-180 (500)
404 TIGR00437 feoB ferrous iron tr 96.8 0.0013 2.7E-08 72.0 5.1 89 152-241 40-134 (591)
405 cd04142 RRP22 RRP22 subfamily. 96.8 0.0039 8.4E-08 58.5 7.6 19 73-91 3-21 (198)
406 KOG0924 mRNA splicing factor A 96.8 0.01 2.3E-07 64.0 11.3 132 46-192 358-508 (1042)
407 cd04159 Arl10_like Arl10-like 96.8 0.002 4.3E-08 56.5 5.2 19 73-91 2-20 (159)
408 PLN03046 D-glycerate 3-kinase; 96.8 0.0014 3E-08 67.9 4.8 41 69-109 211-251 (460)
409 PRK00454 engB GTP-binding prot 96.8 0.0073 1.6E-07 55.7 9.3 22 70-91 24-45 (196)
410 TIGR03680 eif2g_arch translati 96.8 0.0031 6.8E-08 65.9 7.4 22 70-91 4-25 (406)
411 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.03 6.5E-07 50.8 12.8 88 72-163 5-106 (159)
412 PLN02796 D-glycerate 3-kinase 96.8 0.0035 7.5E-08 63.7 7.4 42 69-110 99-140 (347)
413 TIGR00993 3a0901s04IAP86 chlor 96.8 0.0026 5.6E-08 69.2 6.8 118 71-223 119-250 (763)
414 cd04162 Arl9_Arfrp2_like Arl9/ 96.8 0.0037 8E-08 56.5 7.0 65 151-222 42-112 (164)
415 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.01 2.2E-07 54.5 10.0 34 72-110 1-35 (183)
416 PRK04004 translation initiatio 96.8 0.0027 5.9E-08 69.3 7.1 23 69-91 5-27 (586)
417 PHA00729 NTP-binding motif con 96.8 0.0014 3E-08 62.7 4.2 25 71-95 18-42 (226)
418 TIGR00041 DTMP_kinase thymidyl 96.8 0.0017 3.6E-08 60.3 4.7 37 70-106 3-39 (195)
419 cd04158 ARD1 ARD1 subfamily. 96.8 0.0025 5.5E-08 57.7 5.8 66 151-222 41-113 (169)
420 cd01881 Obg_like The Obg-like 96.8 0.0022 4.8E-08 57.7 5.4 17 75-91 1-17 (176)
421 PRK06321 replicative DNA helic 96.8 0.013 2.7E-07 62.5 11.8 44 69-112 225-269 (472)
422 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.7 0.0023 5.1E-08 57.4 5.4 20 72-91 4-23 (166)
423 PRK06893 DNA replication initi 96.7 0.0045 9.8E-08 59.5 7.6 37 71-107 40-76 (229)
424 cd04115 Rab33B_Rab33A Rab33B/R 96.7 0.0038 8.3E-08 56.4 6.8 20 72-91 4-23 (170)
425 PRK08840 replicative DNA helic 96.7 0.0076 1.7E-07 64.0 10.0 41 69-109 216-257 (464)
426 cd04119 RJL RJL (RabJ-Like) su 96.7 0.0024 5.3E-08 56.8 5.4 19 73-91 3-21 (168)
427 COG3598 RepA RecA-family ATPas 96.7 0.014 3E-07 58.2 10.9 90 71-161 90-203 (402)
428 COG0572 Udk Uridine kinase [Nu 96.7 0.0013 2.9E-08 62.3 3.7 40 69-110 7-46 (218)
429 PRK08084 DNA replication initi 96.7 0.0065 1.4E-07 58.7 8.6 37 71-107 46-82 (235)
430 TIGR02528 EutP ethanolamine ut 96.7 0.0029 6.4E-08 55.2 5.7 19 73-91 3-21 (142)
431 cd01130 VirB11-like_ATPase Typ 96.7 0.0086 1.9E-07 55.5 9.1 34 70-104 25-58 (186)
432 PRK04040 adenylate kinase; Pro 96.7 0.002 4.3E-08 60.1 4.7 26 70-95 2-27 (188)
433 cd00879 Sar1 Sar1 subfamily. 96.7 0.0053 1.2E-07 56.4 7.6 21 71-91 20-40 (190)
434 cd01860 Rab5_related Rab5-rela 96.7 0.004 8.6E-08 55.4 6.5 20 72-91 3-22 (163)
435 PRK07764 DNA polymerase III su 96.7 0.022 4.8E-07 64.5 13.8 27 69-95 36-62 (824)
436 cd04110 Rab35 Rab35 subfamily. 96.7 0.0031 6.8E-08 58.9 6.0 21 71-91 7-27 (199)
437 TIGR00235 udk uridine kinase. 96.7 0.0016 3.4E-08 61.5 4.0 41 68-110 4-44 (207)
438 cd04114 Rab30 Rab30 subfamily. 96.7 0.0036 7.7E-08 56.2 6.1 21 71-91 8-28 (169)
439 cd04145 M_R_Ras_like M-Ras/R-R 96.7 0.0034 7.5E-08 55.8 6.0 20 72-91 4-23 (164)
440 PTZ00301 uridine kinase; Provi 96.7 0.0022 4.7E-08 61.0 4.8 40 71-110 4-45 (210)
441 cd00157 Rho Rho (Ras homology) 96.7 0.0014 3.1E-08 58.8 3.5 19 73-91 3-21 (171)
442 cd04151 Arl1 Arl1 subfamily. 96.7 0.0029 6.2E-08 56.4 5.4 64 152-222 42-113 (158)
443 cd00882 Ras_like_GTPase Ras-li 96.7 0.0017 3.7E-08 55.5 3.8 68 151-224 43-117 (157)
444 COG2805 PilT Tfp pilus assembl 96.7 0.0026 5.6E-08 62.8 5.3 80 69-159 124-205 (353)
445 cd04149 Arf6 Arf6 subfamily. 96.7 0.0031 6.8E-08 57.3 5.6 64 152-222 52-123 (168)
446 cd01893 Miro1 Miro1 subfamily. 96.7 0.0031 6.7E-08 56.8 5.5 65 151-222 45-116 (166)
447 cd01867 Rab8_Rab10_Rab13_like 96.7 0.0039 8.5E-08 56.1 6.2 21 71-91 4-24 (167)
448 cd01672 TMPK Thymidine monopho 96.7 0.002 4.2E-08 59.5 4.3 35 72-106 2-36 (200)
449 smart00177 ARF ARF-like small 96.6 0.0032 6.8E-08 57.6 5.5 66 151-222 55-127 (175)
450 PF01591 6PF2K: 6-phosphofruct 96.6 0.0044 9.5E-08 59.3 6.5 41 69-109 11-51 (222)
451 TIGR00376 DNA helicase, putati 96.6 0.013 2.7E-07 64.8 10.9 35 71-105 174-208 (637)
452 cd04125 RabA_like RabA-like su 96.6 0.006 1.3E-07 56.2 7.2 19 73-91 3-21 (188)
453 PRK06921 hypothetical protein; 96.6 0.0062 1.3E-07 60.0 7.6 37 70-106 117-154 (266)
454 COG2403 Predicted GTPase [Gene 96.6 0.014 3.1E-07 59.0 10.1 134 72-225 128-284 (449)
455 PRK00131 aroK shikimate kinase 96.6 0.0018 3.8E-08 58.6 3.5 35 69-108 3-37 (175)
456 PRK04213 GTP-binding protein; 96.6 0.01 2.2E-07 55.3 8.5 21 71-91 10-30 (201)
457 PF08477 Miro: Miro-like prote 96.6 0.0039 8.4E-08 52.7 5.1 19 73-91 2-20 (119)
458 cd04112 Rab26 Rab26 subfamily. 96.5 0.0051 1.1E-07 57.0 6.3 19 73-91 3-21 (191)
459 cd04147 Ras_dva Ras-dva subfam 96.5 0.0076 1.6E-07 56.2 7.5 19 73-91 2-20 (198)
460 COG0481 LepA Membrane GTPase L 96.5 0.0012 2.5E-08 68.6 2.0 132 69-223 8-142 (603)
461 PRK09518 bifunctional cytidyla 96.5 0.0088 1.9E-07 67.0 9.2 117 71-222 276-396 (712)
462 TIGR03015 pepcterm_ATPase puta 96.5 0.0055 1.2E-07 59.7 6.7 28 69-96 42-69 (269)
463 PRK06547 hypothetical protein; 96.5 0.0022 4.8E-08 59.0 3.7 38 68-110 13-50 (172)
464 cd01861 Rab6 Rab6 subfamily. 96.5 0.0039 8.4E-08 55.4 5.2 20 72-91 2-21 (161)
465 cd01866 Rab2 Rab2 subfamily. 96.5 0.0032 7E-08 56.8 4.7 20 72-91 6-25 (168)
466 PRK00652 lpxK tetraacyldisacch 96.5 0.0097 2.1E-07 60.3 8.5 36 71-106 50-87 (325)
467 PTZ00133 ADP-ribosylation fact 96.5 0.0067 1.4E-07 55.9 6.8 20 72-91 19-38 (182)
468 PF09848 DUF2075: Uncharacteri 96.5 0.0053 1.1E-07 62.9 6.7 37 71-107 2-40 (352)
469 COG1100 GTPase SAR1 and relate 96.5 0.0043 9.4E-08 58.4 5.6 114 71-225 6-127 (219)
470 cd04150 Arf1_5_like Arf1-Arf5- 96.5 0.0048 1E-07 55.4 5.6 19 73-91 3-21 (159)
471 smart00173 RAS Ras subfamily o 96.5 0.0056 1.2E-07 54.6 6.0 19 73-91 3-21 (164)
472 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.011 2.4E-07 56.2 8.3 39 63-101 22-62 (213)
473 PLN02348 phosphoribulokinase 96.5 0.0034 7.4E-08 64.7 5.0 43 68-110 47-104 (395)
474 cd01862 Rab7 Rab7 subfamily. 96.5 0.0047 1E-07 55.4 5.4 20 72-91 2-21 (172)
475 PLN00223 ADP-ribosylation fact 96.5 0.0056 1.2E-07 56.4 6.0 65 151-223 59-132 (181)
476 COG0486 ThdF Predicted GTPase 96.5 0.014 3E-07 60.9 9.3 141 46-224 195-339 (454)
477 PRK10512 selenocysteinyl-tRNA- 96.5 0.0077 1.7E-07 66.2 7.9 63 152-222 50-117 (614)
478 cd00227 CPT Chloramphenicol (C 96.5 0.011 2.5E-07 54.0 8.0 38 70-110 2-39 (175)
479 PRK12299 obgE GTPase CgtA; Rev 96.5 0.012 2.6E-07 59.9 8.8 21 71-91 159-179 (335)
480 TIGR01313 therm_gnt_kin carboh 96.5 0.017 3.6E-07 52.1 8.9 33 73-110 1-33 (163)
481 TIGR00491 aIF-2 translation in 96.4 0.0059 1.3E-07 66.7 6.9 23 69-91 3-25 (590)
482 cd01863 Rab18 Rab18 subfamily. 96.4 0.0042 9.1E-08 55.3 4.9 19 73-91 3-21 (161)
483 TIGR01420 pilT_fam pilus retra 96.4 0.014 3.1E-07 59.5 9.4 116 70-202 122-239 (343)
484 PRK14088 dnaA chromosomal repl 96.4 0.024 5.2E-07 59.9 10.9 38 71-108 131-170 (440)
485 PRK07261 topology modulation p 96.4 0.023 4.9E-07 52.1 9.4 23 72-94 2-24 (171)
486 cd04122 Rab14 Rab14 subfamily. 96.4 0.0067 1.5E-07 54.5 5.8 19 73-91 5-23 (166)
487 cd04152 Arl4_Arl7 Arl4/Arl7 su 96.4 0.01 2.2E-07 54.6 7.1 20 72-91 5-24 (183)
488 COG1102 Cmk Cytidylate kinase 96.4 0.0022 4.7E-08 57.9 2.4 38 72-113 2-39 (179)
489 cd01865 Rab3 Rab3 subfamily. 96.3 0.012 2.5E-07 52.9 7.2 20 72-91 3-22 (165)
490 cd01868 Rab11_like Rab11-like. 96.3 0.0081 1.8E-07 53.7 6.1 20 72-91 5-24 (165)
491 PRK12339 2-phosphoglycerate ki 96.3 0.0025 5.5E-08 59.9 2.9 39 69-111 2-40 (197)
492 TIGR02729 Obg_CgtA Obg family 96.3 0.013 2.9E-07 59.5 8.3 21 71-91 158-178 (329)
493 cd04148 RGK RGK subfamily. Th 96.3 0.012 2.5E-07 56.2 7.5 19 73-91 3-21 (221)
494 PRK06645 DNA polymerase III su 96.3 0.062 1.4E-06 57.7 13.7 28 69-96 42-69 (507)
495 PRK14531 adenylate kinase; Pro 96.3 0.026 5.6E-07 52.2 9.5 24 71-94 3-26 (183)
496 PF13086 AAA_11: AAA domain; P 96.3 0.0032 6.9E-08 59.3 3.5 34 72-105 19-60 (236)
497 COG5256 TEF1 Translation elong 96.3 0.0055 1.2E-07 62.9 5.3 135 71-223 8-159 (428)
498 PF13521 AAA_28: AAA domain; P 96.3 0.0055 1.2E-07 55.3 4.9 21 73-93 2-22 (163)
499 PRK00698 tmk thymidylate kinas 96.3 0.0051 1.1E-07 57.4 4.8 35 70-104 3-37 (205)
500 PRK12377 putative replication 96.3 0.0039 8.4E-08 60.8 4.0 75 71-165 102-176 (248)
No 1
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.6e-109 Score=825.75 Aligned_cols=400 Identities=56% Similarity=0.909 Sum_probs=386.6
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
+||||+|||+||||++||++|+++|+++++|++++++++|.|+++++||+||+++||++..++.+..++|.+|+++|.+|
T Consensus 31 ~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQG 110 (451)
T COG0541 31 LREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQG 110 (451)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccC
Confidence 58999999999999999999999999999999999999999999999999999999986677887777899999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
+||||+|++||.||.++|+||++|+||+|||++++||.+++++.++++|..+...+|.+++++++++++...||+|||||
T Consensus 111 sGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDT 190 (451)
T COG0541 111 SGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDT 190 (451)
T ss_pred CChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999988899999999999999988999999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCcee
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~ 240 (458)
+|++++|.+++.|+..+..+++|++++||+|+++||++.+.++.|++.++++|||+||+|+++++|+++|+++.+|.||+
T Consensus 191 AGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIk 270 (451)
T COG0541 191 AGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGDARGGAALSARAITGKPIK 270 (451)
T ss_pred CCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccCCCcchHHHhhHHHHCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHHHHHHHHhhccchhhhh
Q 012680 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIG 320 (458)
Q Consensus 241 fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~~~ 320 (458)
|+|+||+++||++|||+++++|+|||||+.+|+|++++.+++++++++.+++.+|+||++||++|++++.||||+++|++
T Consensus 271 FiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmGpl~~ll~ 350 (451)
T COG0541 271 FIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKGKFTLEDFLEQLEQMKKMGPLSKLLS 350 (451)
T ss_pred EEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-CCChHHHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHHHHHH
Q 012680 321 MIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399 (458)
Q Consensus 321 ~~pg~~-~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~ 399 (458)
||||++ .....+.+.+|++++||++||+|||++||+||++|+ +||++|||+|||++++|||+||+||++|++|||+|
T Consensus 351 miPG~~~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii~--~SR~rRIA~GSG~sv~dVn~Llkq~~~m~~mmk~m 428 (451)
T COG0541 351 MIPGMGMKDSDKDIELDEKKLKRIEAIIDSMTPEERENPDIIN--ASRKRRIARGSGTSVQDVNKLLKQFKQMKKMMKKM 428 (451)
T ss_pred hCCCCCCCCchhhhhccHHHHHHHHHHHHcCCHHHhhCccccC--hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 333445667799999999999999999999999995 89999999999999999999999999999999988
Q ss_pred hhh
Q 012680 400 MGV 402 (458)
Q Consensus 400 ~~~ 402 (458)
.++
T Consensus 429 ~~~ 431 (451)
T COG0541 429 SGG 431 (451)
T ss_pred hCC
Confidence 864
No 2
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-97 Score=724.54 Aligned_cols=452 Identities=38% Similarity=0.612 Sum_probs=429.5
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
|+||++|||++||++++|++|.+++++.+...++..|+++...+.+++++||+.+++++.+++.+.+.+|.||+++|.+|
T Consensus 32 L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG 111 (483)
T KOG0780|consen 32 LKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQG 111 (483)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
+||||+|.+||+|++++|+||++|++|+||++++||+...+...++|+|.+++..+|+.++.++++.++.++||+||+||
T Consensus 112 ~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDT 191 (483)
T KOG0780|consen 112 SGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDT 191 (483)
T ss_pred CCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCcee
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~ 240 (458)
.|+++.+..++.|+.++.+++.|+.+++|+|+++||.+..+++.|++.+++.+||+||+|+++++|.++|+.+.++.||.
T Consensus 192 SGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIi 271 (483)
T KOG0780|consen 192 SGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAVAATKSPII 271 (483)
T ss_pred CCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCCceeeehhhhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHHHHHHHHhhccchhhhh
Q 012680 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIG 320 (458)
Q Consensus 241 fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~~~ 320 (458)
|||+||+++||++|+|++|++|+||+||+.+++|++++.. .++..++.+++..|+||+.|||+|++.+.||||++++++
T Consensus 272 FIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~~kl~~gkFtlrd~y~Qfq~imkmGp~s~v~~ 350 (483)
T KOG0780|consen 272 FIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELVEKLKQGKFTLRDFYDQFQNIMKMGPLSQVLG 350 (483)
T ss_pred EEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHHHHHHHhCCccHHHHHHHHHHHHhhCCHHHHHh
Confidence 9999999999999999999999999999999999999998 778899999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHHHHHHh
Q 012680 321 MIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM 400 (458)
Q Consensus 321 ~~pg~~~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 400 (458)
|||||+.++..+.++.+.+++||.++|+|||++|++.|+++..++||+.|||+|||++++||.+||.||++|..+|||++
T Consensus 351 MiPG~s~m~~~~e~Es~~~~krm~~mmDsMt~~Elds~~~f~~~p~R~~RvArgSG~~v~eV~ell~q~~~~~~~~kk~~ 430 (483)
T KOG0780|consen 351 MIPGMSMMSKGNEEESSAKLKRMMTMMDSMTDEELDSPELFVEEPSRIMRVARGSGTSVQEVMELLAQYKKFAAMMKKIG 430 (483)
T ss_pred hCCCcccCCCcchhHHHHHHHHHHHHHHhcChhhccCccccccCchHhhhhhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988877888889999999999999999999999999889999999999999999999999999999999999998
Q ss_pred hhhcCCCCCCccchHHHhhcccCCCCcchhccccchhhhhhcCCCCCCCCCCCCCCCC
Q 012680 401 GVMEGGSLPALSNLEDALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 458 (458)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (458)
+..|.+|.| ++++ +..+..||++.+++...-..+.+.+.++.++..|+|||+.
T Consensus 431 --~~~G~~~~l-g~~~--~~~~~~~~~~l~q~~~~~~~~~~~~~mg~k~mm~~fg~g~ 483 (483)
T KOG0780|consen 431 --GIKGIFGAL-GNPN--KNMNPAPMAKLKQQMAKMGPQRLLQQMGSKNMMRMFGGGN 483 (483)
T ss_pred --CCCCccccc-CCcc--cccCcCChHHHHHHHHhcccHHHHHHhccchhhHhhcCCC
Confidence 455677777 5555 6779999999999888444444444445999999999973
No 3
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=1.4e-88 Score=700.04 Aligned_cols=396 Identities=56% Similarity=0.923 Sum_probs=375.5
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++||+.+|++|||++++|++|++++++++.++++..+++|.++++++++++|.+++++...++.+...+|.+|+++|++|
T Consensus 31 l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~G 110 (433)
T PRK10867 31 LREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQG 110 (433)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCC
Confidence 47999999999999999999999999999999999999999999999999999999976667777667799999999999
Q ss_pred ccchhHhhHHHHHHHhc-CCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 81 VGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~-G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
|||||++++||.+|+++ |++|++|++|+|||++++|+..+++..|++++..+...+|.+++.+++..+...+||+||||
T Consensus 111 sGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIID 190 (433)
T PRK10867 111 AGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVD 190 (433)
T ss_pred CcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999998 99999999999999999999999999999999876677899999888888777789999999
Q ss_pred CCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 160 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 160 tpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
|||+++.|..++.++..+...+.|+++++|+|+++++++.+.+..|++.+++.|+|+||+|++.++|.++++...+++||
T Consensus 191 TaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~giIlTKlD~~~rgG~alsi~~~~~~PI 270 (433)
T PRK10867 191 TAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPI 270 (433)
T ss_pred CCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHHHHHHHHhhccchhhh
Q 012680 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI 319 (458)
Q Consensus 240 ~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~~ 319 (458)
.|+|+|++++|+++|+|+++++++||+||+.+++|++++.+++++++++.+++.+|+||++||++|++++.||||+++|+
T Consensus 271 ~fig~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~~~~~~g~f~l~d~~~q~~~~~kmG~~~~~~ 350 (433)
T PRK10867 271 KFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLAKKLKKGKFDLEDFLEQLQQMKKMGGLGSLL 350 (433)
T ss_pred EEEeCCCccccCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCChHHHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHHHHHH
Q 012680 320 GMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399 (458)
Q Consensus 320 ~~~pg~~~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~ 399 (458)
+||||++++.. +.+++++++|++||+|||++||+||++| ++||++|||+|||++++|||+||+||++|++|||+|
T Consensus 351 ~m~Pg~~~~~~---~~~~~~~~~~~~ii~SMt~~Er~~p~~~--~~sR~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~~ 425 (433)
T PRK10867 351 GMLPGMGNMKA---QLDDKELKRIEAIINSMTPKERANPDIL--NGSRKRRIAKGSGTTVQEVNRLLKQFEQMKKMMKKM 425 (433)
T ss_pred HhCCCcccccc---cccHHHHHHHHHHHHcCCHHHHhCcccc--chHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987643 2457899999999999999999999999 479999999999999999999999999999999988
Q ss_pred hh
Q 012680 400 MG 401 (458)
Q Consensus 400 ~~ 401 (458)
.+
T Consensus 426 ~~ 427 (433)
T PRK10867 426 KG 427 (433)
T ss_pred cC
Confidence 75
No 4
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=7.9e-88 Score=690.44 Aligned_cols=395 Identities=30% Similarity=0.555 Sum_probs=371.0
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++||+++||+|||++++|++|++++++++.++++..+++|.++++++++++|.+++++...++.+..++|++|+++|++|
T Consensus 31 l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~G 110 (429)
T TIGR01425 31 LKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQG 110 (429)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhCCCCccccccCCCCeEEEEECCCC
Confidence 57999999999999999999999999999999999999999999999999999999987666777667799999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
|||||++++||.+|+++|++|++|++|+||+++++|+..+++..++|++......+|..++++++.+++..+||+|||||
T Consensus 111 vGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDT 190 (429)
T TIGR01425 111 SGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDT 190 (429)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999987766778889999999988777899999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCcee
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~ 240 (458)
||+++.+..++.++..+.....|++++||+|+++++++.+++..|++.+++.|+|+||+|++.++|.++++...+++||.
T Consensus 191 aGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD~~argG~aLs~~~~t~~PI~ 270 (429)
T TIGR01425 191 SGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGHAKGGGALSAVAATKSPII 270 (429)
T ss_pred CCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECccCCCCccHHhhhHHHHCCCeE
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHHHHHHHHhhccchhhhh
Q 012680 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIG 320 (458)
Q Consensus 241 fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~~~ 320 (458)
|+|+|++++|+++|+|++++++++|+||+.+++|++++.+++++++++.+++.+|+||++||++|++++.||||+++|++
T Consensus 271 fig~Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~k~~~~~f~l~D~~~q~~~i~kmG~~~~i~~ 350 (429)
T TIGR01425 271 FIGTGEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIEKLKEGTFTLRDMYEQFQNLLKMGPLGQILS 350 (429)
T ss_pred EEcCCCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred ccCCCCC-CChH-HHHHHHHhhHHHHHHHHhCCcccccC--ccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHH
Q 012680 321 MIPGMGK-ITPA-QVREAEKSLKIMEAMIEAMTPEEREK--PELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVR 395 (458)
Q Consensus 321 ~~pg~~~-~~~~-~~~~~~~~~~~~~~~i~smt~~e~~~--p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~ 395 (458)
||||+++ +... +.+.+++++++|++||+|||++||+| |++|+.++||++|||+|||++++|||+||+||++|++|
T Consensus 351 m~Pg~~~~~~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~i~~~~~sR~~RIa~GSG~~~~~V~~ll~~~~~~~~~ 429 (429)
T TIGR01425 351 MIPGFSTDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQPSRIQRVARGSGRSIRDVQELLEQYKKFAQM 429 (429)
T ss_pred hCcCcchhhhhhhcccccHHHHHhHHHHHhcCCHHHHccCCCccccCCccHHHHHHccCCCCHHHHHHHHHHHHHHhcC
Confidence 9999984 4221 12357889999999999999999998 99995457999999999999999999999999999654
No 5
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=2.3e-86 Score=685.17 Aligned_cols=408 Identities=42% Similarity=0.713 Sum_probs=375.6
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++||+.+|++|||++++|++|++++++++.+.++..+++|.++++++++++|.+++++....+.+. .+|.+|+++|++|
T Consensus 27 l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~G 105 (437)
T PRK00771 27 VKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQG 105 (437)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCC
Confidence 478999999999999999999999999999999999999999999999999999999765545443 5789999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
+||||++.+||.+|+++|++|++|++|+|||++.+|+..++...+++++......++..++++++..+. .+|+|||||
T Consensus 106 sGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~--~~DvVIIDT 183 (437)
T PRK00771 106 SGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK--KADVIIVDT 183 (437)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh--cCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999876556678888888888764 469999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCcee
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~ 240 (458)
||+++.+..++.|+..+.....|+++++|+|+++++++.+.+..|+..+++.|+|+||+|++.++|.++++...++.||.
T Consensus 184 AGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~ 263 (437)
T PRK00771 184 AGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIK 263 (437)
T ss_pred CCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEEEEecccCCCcccHHHHHHHHHCcCEE
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHHHHHHHHhhccchhhhh
Q 012680 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIG 320 (458)
Q Consensus 241 fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~~~ 320 (458)
|+|+|++++||++|+|+++++++|||||+.+++|++++.+++++.+++.+++.+++||++||++|++++.||||+++|++
T Consensus 264 fig~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~kmG~~~~~~~ 343 (437)
T PRK00771 264 FIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMKGKFTLKDMYKQLEAMNKMGPLKQILQ 343 (437)
T ss_pred EEecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ccCCCCC-CChHHHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHHHHHH
Q 012680 321 MIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399 (458)
Q Consensus 321 ~~pg~~~-~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~ 399 (458)
||||+++ ++..+.+.+++++++|++||+|||++||+||++| ++||++|||+|||++++|||+||+||++|++|||+|
T Consensus 344 m~pg~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~--~~sR~~Ria~GsG~~~~~v~~ll~~~~~~~~~~~~~ 421 (437)
T PRK00771 344 MLPGLGGKLPDEALEVTEEKLKKYKAIMDSMTEEELENPEII--NASRIRRIARGSGTTVEDVRELLKYYKMMKKAMKQL 421 (437)
T ss_pred hCcCccccchhhhhcccHHHHHHHHHHHHcCCHHHHhCcccc--cHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999984 5443334578999999999999999999999999 479999999999999999999999999998888887
Q ss_pred hhhhcCCCCCCccchHHHh
Q 012680 400 MGVMEGGSLPALSNLEDAL 418 (458)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~ 418 (458)
.+. .|.|..+++++
T Consensus 422 ~~~-----~~~~~~~~~~~ 435 (437)
T PRK00771 422 KKG-----KGKMGKLMKQF 435 (437)
T ss_pred cCC-----CchHHHHHHhc
Confidence 642 35566666543
No 6
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=6.5e-86 Score=680.22 Aligned_cols=396 Identities=56% Similarity=0.919 Sum_probs=370.8
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++||+++||+|||++++|++|++++++++.++++..+++|.++++++++++|.+++++....+.+...+|++++++|++|
T Consensus 30 l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~G 109 (428)
T TIGR00959 30 LREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAILGGENASLNLAKKPPTVILMVGLQG 109 (428)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCC
Confidence 47999999999999999999999999999999999999999999999999999999976556666666799999999999
Q ss_pred ccchhHhhHHHHHHH-hcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 81 VGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 81 sGKTT~a~~LA~~L~-~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
+||||++++||.+|. +.|++|++|+||+|||++.+|+..++...+++++......+|.+++.+++..+...+||+||||
T Consensus 110 sGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~DvVIID 189 (428)
T TIGR00959 110 SGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVD 189 (428)
T ss_pred CcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999987 5799999999999999999999999999999999877677888888888888777889999999
Q ss_pred CCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 160 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 160 tpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
|||+++.|..++.++..+...+.|++++||+|+++++++.+.+..|...+++.|+|+||+|++.++|.++++...+++||
T Consensus 190 TaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD~~~~~G~~lsi~~~~~~PI 269 (428)
T TIGR00959 190 TAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPI 269 (428)
T ss_pred CCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCE
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred eEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHHHHHHHHhhccchhhh
Q 012680 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI 319 (458)
Q Consensus 240 ~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~~ 319 (458)
.|+|+|++++|+++|+|+++++++||+||+.+++|++++.+++++++++.+++.+|+||++||++|++++.||||+++|+
T Consensus 270 ~fi~~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~kmG~~~~~~ 349 (428)
T TIGR00959 270 KFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEKMKKGQFDLEDFLEQLRQIKKMGPLSSLL 349 (428)
T ss_pred EEEeCCCChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hccCCCCCCChH--HHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHHHH
Q 012680 320 GMIPGMGKITPA--QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 397 (458)
Q Consensus 320 ~~~pg~~~~~~~--~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~ 397 (458)
+||||+++.... ..+.+++++++|++||+|||++||+||++| ++||++|||+|||++++|||+||+||++|++|||
T Consensus 350 ~~~Pg~~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~--~~sR~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~ 427 (428)
T TIGR00959 350 KMIPGMGGVKPSLSDLELDEKQFKRIEAIISSMTPEERRNPKIL--NPSRRKRIAAGSGTTVQDVNKLIKRFEQMKKMMK 427 (428)
T ss_pred HhCcCccccccccccccccHHHHHHHHHHHHcCCHHHHhCcccc--cHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999865321 123467899999999999999999999999 4799999999999999999999999999988887
Q ss_pred H
Q 012680 398 N 398 (458)
Q Consensus 398 ~ 398 (458)
+
T Consensus 428 ~ 428 (428)
T TIGR00959 428 K 428 (428)
T ss_pred c
Confidence 4
No 7
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.6e-44 Score=349.36 Aligned_cols=261 Identities=40% Similarity=0.692 Sum_probs=235.3
Q ss_pred hhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhcccee----eeEeccCCCeEEEeec
Q 012680 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS----ELVFAKSRPTVILLAG 77 (458)
Q Consensus 2 ~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~----~~~~~~~~p~iI~i~G 77 (458)
+|+...|++|||+++++..+++.++++ .+.. ..+...+.+.+++.+.+.+++.+... ......++|.+|+++|
T Consensus 70 eeLE~~Li~aDvg~e~~~~i~~~l~~~-~~~~--~~~~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vG 146 (340)
T COG0552 70 EELEELLIEADVGVETAEEIIEELRKR-EGKK--KKIKDEETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVG 146 (340)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHH-hccc--ccCCCHHHHHHHHHHHHHHHhcccccccchhhhccCCCcEEEEEEe
Confidence 578999999999999999999999986 2222 22334667888999999999886322 1122245799999999
Q ss_pred cccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEE
Q 012680 78 LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVI 157 (458)
Q Consensus 78 ~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVI 157 (458)
-.|+||||+.++||++|.++|++|++..||+||.++++||..|++..|++++......+|..++.+++++++.++||+||
T Consensus 147 VNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~Dvvl 226 (340)
T COG0552 147 VNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVL 226 (340)
T ss_pred cCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999998667889999999999999999999999
Q ss_pred EeCCccccccHHHHHHHHHHHhhcCc------ceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeee
Q 012680 158 VDTAGRLQIDKAMMDELKDVKRVLNP------TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 231 (458)
Q Consensus 158 IDtpg~l~~d~~l~~el~~l~~~~~~------~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i 231 (458)
|||+|+++.+..+|.||..+.+++.+ +++++|+|+.+||+++++++.|++.++++|+|+||+|+++++|.++++
T Consensus 227 iDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I 306 (340)
T COG0552 227 IDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSI 306 (340)
T ss_pred EeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEecccCCCcceeeeH
Confidence 99999999999999999999999864 458888899999999999999999999999999999999999999999
Q ss_pred eeccCCceeEeecCCccccCCCCCcchhhhhhhc
Q 012680 232 KEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 265 (458)
Q Consensus 232 ~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG 265 (458)
.+.+++||+|+|.|++++||.+|+++.|++.+++
T Consensus 307 ~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 307 AYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred HHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 9999999999999999999999999999887653
No 8
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=2.1e-40 Score=332.68 Aligned_cols=264 Identities=40% Similarity=0.669 Sum_probs=242.8
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEe-----ccCCCeEEEe
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVF-----AKSRPTVILL 75 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~-----~~~~p~iI~i 75 (458)
+++|+.+|+++||++.++++|++++++...+..+..+.++.+.+.+++++++.++++... ++.+ ...+|.+|++
T Consensus 67 l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~~~vi~~ 145 (336)
T PRK14974 67 LEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGD-LFDLIEEIKSKGKPVVIVF 145 (336)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCc-chhhhhhhhccCCCeEEEE
Confidence 468999999999999999999999999999988877778888899999999999998543 2221 2346899999
Q ss_pred eccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcE
Q 012680 76 AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDV 155 (458)
Q Consensus 76 ~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~Dv 155 (458)
+|++|+||||++++||.+|...|++|+++++|+||.++.+|+..++...|++++......+|..++.+++..+...++|+
T Consensus 146 ~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~Dv 225 (336)
T PRK14974 146 VGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDV 225 (336)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999999999999999999999999999999999999877667788888888888877788999
Q ss_pred EEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeecc
Q 012680 156 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 235 (458)
Q Consensus 156 VIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~ 235 (458)
|||||+|+++.+..++.+|..+.+...|+.++||+|+.+++++.+++..|...+++.|+|+||+|.+.++|.++++...+
T Consensus 226 VLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls~~~~~ 305 (336)
T PRK14974 226 VLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVI 305 (336)
T ss_pred EEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred CCceeEeecCCccccCCCCCcchhhhhhhc
Q 012680 236 GKPIKLVGRGERMEDLEPFYPDRMAGRILG 265 (458)
Q Consensus 236 g~pI~fig~g~~v~dl~~f~p~~~~sr~lG 265 (458)
+.||.|+|+|++++||.+|+|+.++++++|
T Consensus 306 ~~Pi~~i~~Gq~v~Dl~~~~~~~~v~~llg 335 (336)
T PRK14974 306 GKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335 (336)
T ss_pred CcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 999999999999999999999999999886
No 9
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=3.3e-40 Score=324.03 Aligned_cols=260 Identities=43% Similarity=0.689 Sum_probs=232.7
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
+++|+.+|+++||+..++++|++++.+...+.+.. ..+.+.+++++++.++++.....+....++|++++++|++|
T Consensus 7 ~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G 82 (272)
T TIGR00064 7 FEELEEILLESDVGYEVVEKIIEALKKELKGKKVK----DAELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNG 82 (272)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCC----CHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCC
Confidence 47899999999999999999999999887766543 24568899999999998754334444456789999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
+||||++++||.++++.|++|+++++|+||+++.+|+..+.+..+++++......+|...+.+.+..+...+||+|||||
T Consensus 83 ~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT 162 (272)
T TIGR00064 83 VGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDT 162 (272)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999887766677877777777776667899999999
Q ss_pred CccccccHHHHHHHHHHHhhcC------cceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeec
Q 012680 161 AGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 234 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~------~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~ 234 (458)
||+.+.|..++.++..+.+... |+++++|+|++++++....+..|.+.+++.|+|+||+|.+.++|.++++...
T Consensus 163 ~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l~~~~~ 242 (272)
T TIGR00064 163 AGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYE 242 (272)
T ss_pred CCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHHHHHHH
Confidence 9999999999999999988877 8999999999999988898999988889999999999999999999999999
Q ss_pred cCCceeEeecCCccccCCCCCcchhhhhhh
Q 012680 235 SGKPIKLVGRGERMEDLEPFYPDRMAGRIL 264 (458)
Q Consensus 235 ~g~pI~fig~g~~v~dl~~f~p~~~~sr~l 264 (458)
++.||.|+++|++++||++|+|+++++++|
T Consensus 243 ~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 243 LKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred HCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 999999999999999999999999988764
No 10
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=4.1e-39 Score=322.34 Aligned_cols=262 Identities=39% Similarity=0.696 Sum_probs=233.1
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
+++|+.+|+++||+++++++++++++++..+.. ..+.+.+.+++++++.++++....++.....+|.+++++|++|
T Consensus 49 ~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnG 124 (318)
T PRK10416 49 LEELEELLIEADVGVETTEEIIEELRERVKRKN----LKDPEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNG 124 (318)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccC----CCCHHHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCC
Confidence 368999999999999999999999998876544 3456678999999999999854445555455789999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
+||||++.+||.+++..|++|+++++|+||+++++|+..++...+++++......+|...+.+.+..+...+||+|||||
T Consensus 125 sGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDT 204 (318)
T PRK10416 125 VGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDT 204 (318)
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999999999999999999999999999999899999999887766667776666777766668999999999
Q ss_pred CccccccHHHHHHHHHHHhhc------CcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeec
Q 012680 161 AGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 234 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~ 234 (458)
||+++.+..++.++..+..++ .|+++++|+|++++++....+..|...+++.|+|+||+|++.++|.++++...
T Consensus 205 aGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIlTKlD~t~~~G~~l~~~~~ 284 (318)
T PRK10416 205 AGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADE 284 (318)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCCCCCCccHHHHHHHH
Confidence 999999999999999888754 47899999999999999999999988899999999999999999999999999
Q ss_pred cCCceeEeecCCccccCCCCCcchhhhhhhcc
Q 012680 235 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGM 266 (458)
Q Consensus 235 ~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~ 266 (458)
++.||.|+|+|++++||++|+|+.++++++|.
T Consensus 285 ~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~~ 316 (318)
T PRK10416 285 LGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG 316 (318)
T ss_pred HCCCEEEEeCCCChhhCccCCHHHHHHHHhCC
Confidence 99999999999999999999999999998873
No 11
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=1.5e-35 Score=277.62 Aligned_cols=196 Identities=48% Similarity=0.722 Sum_probs=183.3
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
|++++++|++||||||++++||++++.+|++|.++.+|+||.++++|++.+++..|++++......+|.++++++++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 78999999999999999999999999889999999999999999999999999999999988777789999999999887
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCccee
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 229 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~ 229 (458)
.+++|+|||||||+.+.+...+.++..+.....|++++||++++.+++....+..|.+.+++.++|+||+|+..+.|.++
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL 160 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence 78899999999999999999999999999999999999999999999988888889888999999999999999999999
Q ss_pred eeeeccCCceeEeecCCccccCCCCCcchhhhhhhc
Q 012680 230 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 265 (458)
Q Consensus 230 ~i~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG 265 (458)
++...++.||.|+++|++++|+++|+|+.+++++||
T Consensus 161 ~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 161 SLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp HHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred eHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 999999999999999999999999999999999987
No 12
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=100.00 E-value=2.1e-33 Score=235.36 Aligned_cols=99 Identities=46% Similarity=0.805 Sum_probs=89.9
Q ss_pred ccChhHHHHHHHHHHhhccchhhhhccCCCCCC----Ch-HHHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhh
Q 012680 296 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI----TP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKR 370 (458)
Q Consensus 296 ~~~~edl~~~l~~~~~~g~~~~~~~~~pg~~~~----~~-~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~r 370 (458)
+||++||++|++++.|||++++|++||||+++. +. ...+.+++++++|++||+|||++||+||++|+ .||++|
T Consensus 1 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~~~~~~~~~lk~~~~Ii~SMT~~Er~~p~ll~--~sR~~R 78 (104)
T PF02978_consen 1 KFTLRDFLEQLQQIKKMGPLSKIMSMIPGMGNMMESLPSEQEEEEDEKKLKRMEAIIDSMTPEERDNPKLLN--ESRRRR 78 (104)
T ss_dssp SSCHHHHHHHHHHHHHTSTTHHHHTTSSSSSSS-SSTTCSSSSHHHHHHHHHHHHHHTTSBHHHHHCGGGHH--HHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHCcCccccccccchhcchhhhHHHHHHHHHHHHCcCHHHHhCccccc--hHHHHH
Confidence 599999999999999999999999999999876 32 23456789999999999999999999999995 599999
Q ss_pred hccccCchHHHHHHHHHHHHHHHHHH
Q 012680 371 VAQDSGKTEQQVSQLVAQLFQMRVRM 396 (458)
Q Consensus 371 ia~gsg~~~~~v~~ll~~~~~~~~~~ 396 (458)
||+|||++++|||+||++|++|++||
T Consensus 79 IA~GSG~~~~eV~~ll~~f~~~~~mm 104 (104)
T PF02978_consen 79 IARGSGTTVQEVNELLKQFKQMKKMM 104 (104)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998876
No 13
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.98 E-value=2.5e-31 Score=267.62 Aligned_cols=252 Identities=22% Similarity=0.368 Sum_probs=211.3
Q ss_pred hhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccc
Q 012680 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 81 (458)
Q Consensus 2 ~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~Gs 81 (458)
..+.+.|++.||+..++.++++.+......... .+ ...+.+.+.+.+...+.... . + ..+|++|+++|++|+
T Consensus 181 ~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~---~~-~~~~~~~l~~~l~~~l~~~~--~-~-~~~~~vI~LVGptGv 252 (436)
T PRK11889 181 QKVIRMLEQNDVEQYFIHAYAEKLKVKFENATM---IT-EEEVIEYILEDMRSHFNTEN--V-F-EKEVQTIALIGPTGV 252 (436)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhhhccccc---CC-HHHHHHHHHHHHHHHhcccc--c-c-ccCCcEEEEECCCCC
Confidence 467899999999999999999988765333221 12 24567777777777766421 1 1 235789999999999
Q ss_pred cchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh-cCCcEEEEeC
Q 012680 82 GKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK-KNVDVVIVDT 160 (458)
Q Consensus 82 GKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~-~~~DvVIIDt 160 (458)
||||++.+||..|..+|++|+++++|+||.++++|+..+++..|++++... ++.++ .+++..+.. .+||+|||||
T Consensus 253 GKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~L-~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 253 GKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAM-TRALTYFKEEARVDYILIDT 328 (436)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHHH-HHHHHHHHhccCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999988642 34443 456666543 3699999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
||+.+.+...+.++..+.....|+.++||+++++. ++..+++..|.. +++.|+|+||+|++.++|.++++...+++||
T Consensus 329 aGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~~~~~lPI 407 (436)
T PRK11889 329 AGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSSAPI 407 (436)
T ss_pred ccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHHHHCcCE
Confidence 99999899999999999888889999999999655 677888889986 8999999999999999999999999999999
Q ss_pred eEeecCCcc-ccCCCCCcchhhhhhhcc
Q 012680 240 KLVGRGERM-EDLEPFYPDRMAGRILGM 266 (458)
Q Consensus 240 ~fig~g~~v-~dl~~f~p~~~~sr~lG~ 266 (458)
.|+++|+++ +|+..+++..++..++|.
T Consensus 408 syit~GQ~VPeDI~~A~~~~L~~~llg~ 435 (436)
T PRK11889 408 VLMTDGQDVKKNIHIATAEHLAKQMLQT 435 (436)
T ss_pred EEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 999999999 789999999998888874
No 14
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=5.1e-31 Score=269.34 Aligned_cols=253 Identities=23% Similarity=0.291 Sum_probs=202.7
Q ss_pred hhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccc
Q 012680 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 81 (458)
Q Consensus 2 ~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~Gs 81 (458)
.++++.|+++||+..+++++++++.+.....+. .....+.+.+.+.+.+.+... .++ .....|.+++++|++|+
T Consensus 112 ~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~v~~~l~~~l~~~i~~~-~~~-~~~~~~~vi~lvGptGv 185 (388)
T PRK12723 112 LKIEDILRENDFSESYIKDINEFIKKEFSLSDL----DDYDKVRDSVIIYIAKTIKCS-GSI-IDNLKKRVFILVGPTGV 185 (388)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhc----CCHHHHHHHHHHHHHHHhhcc-Ccc-ccCCCCeEEEEECCCCC
Confidence 468899999999999999999999876533322 122345666666666665421 111 12245789999999999
Q ss_pred cchhHhhHHHHHHHh----cCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEE
Q 012680 82 GKTTVSAKLANYLKK----QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVI 157 (458)
Q Consensus 82 GKTT~a~~LA~~L~~----~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVI 157 (458)
||||++++||.++.. .|++|.++++|+||+++.+|+..+++..|+|+..... +. .+...+..+ .+||+||
T Consensus 186 GKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~~-~l~~~L~~~--~~~DlVL 259 (388)
T PRK12723 186 GKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---FK-DLKEEITQS--KDFDLVL 259 (388)
T ss_pred CHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---HH-HHHHHHHHh--CCCCEEE
Confidence 999999999998873 5899999999999999999999999999998865432 22 234444443 5899999
Q ss_pred EeCCccccccHHHHHHHHHHHhhcC-cceEEEEEeccchhhHhH-hhhhheeeeeeceeeeecccCCCCCcceeeeeecc
Q 012680 158 VDTAGRLQIDKAMMDELKDVKRVLN-PTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 235 (458)
Q Consensus 158 IDtpg~l~~d~~l~~el~~l~~~~~-~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~ 235 (458)
|||+|+.+.+...+.++..+..... +.+++||+++++++.... ....|. .+++.|+|+||+|++.++|.++++...+
T Consensus 260 IDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~~~~~~~I~TKlDet~~~G~~l~~~~~~ 338 (388)
T PRK12723 260 VDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLIYEM 338 (388)
T ss_pred EcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeccCCCcchHHHHHHHHH
Confidence 9999999887766788888877665 458999999988855444 445554 5789999999999999999999999999
Q ss_pred CCceeEeecCCcc-ccCCCCCcchhhhhhhccc
Q 012680 236 GKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 236 g~pI~fig~g~~v-~dl~~f~p~~~~sr~lG~~ 267 (458)
+.||.|+++|+++ +|+.+|+|..++..++|+.
T Consensus 339 ~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~ 371 (388)
T PRK12723 339 RKEVSYVTDGQIVPHNISIAEPLTFIKKINGYR 371 (388)
T ss_pred CCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCC
Confidence 9999999999999 8999999999999999987
No 15
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=1.7e-30 Score=261.06 Aligned_cols=254 Identities=23% Similarity=0.321 Sum_probs=208.9
Q ss_pred hhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccc
Q 012680 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 81 (458)
Q Consensus 2 ~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~Gs 81 (458)
+|+.+.|++.||+..++.++++.+.+...... ..+ .+.+...+.+.|...+... .++. ..++++++++|++|+
T Consensus 145 ~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~-~~~---~~~v~~~~~~~L~~~l~~~-~~~~--~~~~~ii~lvGptGv 217 (407)
T PRK12726 145 SDFVKFLKGRGISDTYVADFMQAGRKQFKQVE-TAH---LDDITDWFVPYLSGKLAVE-DSFD--LSNHRIISLIGQTGV 217 (407)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-ccc---HHHHHHHHHHHhcCcEeeC-CCce--ecCCeEEEEECCCCC
Confidence 37789999999999999999999976533211 111 2346666666666665532 1222 246789999999999
Q ss_pred cchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH-hcCCcEEEEeC
Q 012680 82 GKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK-KKNVDVVIVDT 160 (458)
Q Consensus 82 GKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~-~~~~DvVIIDt 160 (458)
||||++++||.++.++|++|.+|++|+||+++++|+..+++..+++++.. .+|.++ ..++..+. ..+||+|||||
T Consensus 218 GKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL-~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 218 GKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAEL-EEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHH-HHHHHHHHhcCCCCEEEEEC
Confidence 99999999999998899999999999999999999999999999988754 345543 56666654 25799999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
||+.+.+...+.++..+.....|+.++||+++.+. ++..+.+..|. .+++.|+|+||+|++.++|.++++...+|+||
T Consensus 294 AGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~-~l~i~glI~TKLDET~~~G~~Lsv~~~tglPI 372 (407)
T PRK12726 294 VGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLA-EIPIDGFIITKMDETTRIGDLYTVMQETNLPV 372 (407)
T ss_pred CCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcC-cCCCCEEEEEcccCCCCccHHHHHHHHHCCCE
Confidence 99999999999999999998889998999988444 56667666665 68999999999999999999999999999999
Q ss_pred eEeecCCccc-cCCCCCcchhhhhhhccc
Q 012680 240 KLVGRGERME-DLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 240 ~fig~g~~v~-dl~~f~p~~~~sr~lG~~ 267 (458)
.|+++|+++. |+..+++..++.+++|.+
T Consensus 373 sylt~GQ~VpdDi~~a~~~~Lv~~ll~~~ 401 (407)
T PRK12726 373 LYMTDGQNITENIFRPKSRWLAERFVGTD 401 (407)
T ss_pred EEEecCCCCCcccCCCCHHHHHHHHhccc
Confidence 9999999994 688888988999988865
No 16
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=1.5e-30 Score=281.89 Aligned_cols=249 Identities=26% Similarity=0.359 Sum_probs=209.1
Q ss_pred hhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccc
Q 012680 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 81 (458)
Q Consensus 2 ~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~Gs 81 (458)
.++++.|+++||+.+++++|++++.+. .++ ..+.++++++|.+.+... ....+.-.++.|++++|++|+
T Consensus 128 ~~l~~~Ll~~dv~~~la~~l~~~l~~~---------~~~-~~~~~~l~~~L~~~l~il-~~~~~~~~~g~Vi~lVGpnGv 196 (767)
T PRK14723 128 ASLFRWLLGAGFSGQLARALLERLPVG---------YDR-PAAMAWIRNELATHLPVL-RDEDALLAQGGVLALVGPTGV 196 (767)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhc---------CCH-HHHHHHHHHHHHHHhhhc-cCCCcccCCCeEEEEECCCCC
Confidence 468999999999999999999998653 122 347889999998876421 111111124689999999999
Q ss_pred cchhHhhHHHHHHH-hcC-CceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 82 GKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 82 GKTT~a~~LA~~L~-~~G-~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
||||++.+||..+. ..| ++|.++++|+||+++++|+..+++..+++++... ++.+ +.+++..+ .++|+||||
T Consensus 197 GKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~~~--~~~D~VLID 270 (767)
T PRK14723 197 GKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALAAL--GDKHLVLID 270 (767)
T ss_pred cHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHHHh--cCCCEEEEe
Confidence 99999999999885 566 6999999999999999999999999999887543 4444 56667665 478999999
Q ss_pred CCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh-hHhHhhhhheee--eeeceeeeecccCCCCCcceeeeeeccC
Q 012680 160 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIE--IGITGAILTKLDGDSRGGAALSVKEVSG 236 (458)
Q Consensus 160 tpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~-~~~~~~~~~~~~--~~i~GvIlnk~D~~~~~g~~~~i~~~~g 236 (458)
|||+.+.+..++.++..+.....|++++||+|+++.. +..+.+..|... .++.|+|+||+|++.++|.++++...++
T Consensus 271 TAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~ 350 (767)
T PRK14723 271 TVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRHR 350 (767)
T ss_pred CCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHHC
Confidence 9999999999999999988888899999999998764 445577888753 4799999999999999999999999999
Q ss_pred CceeEeecCCcc-ccCCCCCcchhhhhhhccc
Q 012680 237 KPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 237 ~pI~fig~g~~v-~dl~~f~p~~~~sr~lG~~ 267 (458)
+||.|+++|+++ +|+++|+++.+++++++..
T Consensus 351 lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~~ 382 (767)
T PRK14723 351 LPVHYVSTGQKVPEHLELAQADELVDRAFATP 382 (767)
T ss_pred CCeEEEecCCCChhhcccCCHHHHHHHHhccc
Confidence 999999999999 9999999999999999864
No 17
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=3.2e-30 Score=262.92 Aligned_cols=253 Identities=22% Similarity=0.301 Sum_probs=201.8
Q ss_pred hhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEec-cCCCeEEEeecccc
Q 012680 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFA-KSRPTVILLAGLQG 80 (458)
Q Consensus 2 ~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~-~~~p~iI~i~G~~G 80 (458)
.+++..|+++||+..++.++++.+.++..+.+.+. .+.+.+.+.+.|.+.+......+... ..++.+++++|++|
T Consensus 158 ~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~----~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptG 233 (432)
T PRK12724 158 QRLGERLVREGMSQSYVEEMASKLEERLSPVDQGR----NHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTG 233 (432)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccc----hHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCC
Confidence 46789999999999999999999988765543321 24577888888888775432212111 13468999999999
Q ss_pred ccchhHhhHHHHHH-HhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 81 VGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 81 sGKTT~a~~LA~~L-~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
|||||++.+||..+ ...|++|+++++|+||+++.+|+..+++..+++++.... +......+...+||+||||
T Consensus 234 vGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~-------~~~l~~~l~~~~~D~VLID 306 (432)
T PRK12724 234 SGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-------IKKFKETLARDGSELILID 306 (432)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH-------HHHHHHHHHhCCCCEEEEe
Confidence 99999999999866 577999999999999999999999999988988764311 2233333334689999999
Q ss_pred CCccccccHHHHHHHHHHHhhc---CcceEEEEEeccchhhHh-HhhhhheeeeeeceeeeecccCCCCCcceeeeeecc
Q 012680 160 TAGRLQIDKAMMDELKDVKRVL---NPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 235 (458)
Q Consensus 160 tpg~l~~d~~l~~el~~l~~~~---~~~~vllVvda~~g~~~~-~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~ 235 (458)
|||+.+.+...+.++..+.... .+.+++||+|++++++.. +.+..| ..+++.|+|+||+|.+.++|.++++...+
T Consensus 307 TaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~~~~~glIlTKLDEt~~~G~il~i~~~~ 385 (432)
T PRK12724 307 TAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ESLNYRRILLTKLDEADFLGSFLELADTY 385 (432)
T ss_pred CCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cCCCCCEEEEEcccCCCCccHHHHHHHHH
Confidence 9999988888888988888765 356899999999887544 444555 78999999999999999999999999999
Q ss_pred CCceeEeecCCcc-ccCCCCCcchhhhhhhcc
Q 012680 236 GKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 266 (458)
Q Consensus 236 g~pI~fig~g~~v-~dl~~f~p~~~~sr~lG~ 266 (458)
+.||.|+++|+++ +|+..+++..++..++=+
T Consensus 386 ~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~~~ 417 (432)
T PRK12724 386 SKSFTYLSVGQEVPFDILNATKNLMAECVVFP 417 (432)
T ss_pred CCCEEEEecCCCCCCCHHHhhHHHHHHHhcCh
Confidence 9999999999999 789888887776655433
No 18
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.3e-30 Score=258.50 Aligned_cols=255 Identities=29% Similarity=0.487 Sum_probs=224.5
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhcccee-ee------EeccCCCeEE
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS-EL------VFAKSRPTVI 73 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~-~~------~~~~~~p~iI 73 (458)
|+.++..|+.-.|+.+.+.++++.|.....|..+-.--+-.+.+.+.+++.|+++|-+..+ .+ ....++|.+|
T Consensus 302 L~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~~krPYVi 381 (587)
T KOG0781|consen 302 LDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTPQRSVDLLRDIMSARRRKRPYVI 381 (587)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCCCeEE
Confidence 3567899999999999999999999999998876543344567788999999999976432 11 1224589999
Q ss_pred EeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcccc------ccceecCCCccChHHHHHhhHHH
Q 012680 74 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV------GVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 74 ~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~------gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
.++|-.|+||||..+++|+||.+.+++|++..||+||.++++||++|.+.. -++++..+...++..++++++++
T Consensus 382 ~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~ 461 (587)
T KOG0781|consen 382 SFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQE 461 (587)
T ss_pred EEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988766 57788888889999999999999
Q ss_pred HHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeee-------eeceeeeeccc
Q 012680 148 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-------GITGAILTKLD 220 (458)
Q Consensus 148 ~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~-------~i~GvIlnk~D 220 (458)
++..+||+|+|||+|+++.+..+|.+|..+..+..||-+++|-.|..|.+++.++..|+..+ .|.|+|+||+|
T Consensus 462 a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 462 ARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFD 541 (587)
T ss_pred HHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999998887633 48999999999
Q ss_pred CC-CCCcceeeeeeccCCceeEeecCCccccCCCCC
Q 012680 221 GD-SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFY 255 (458)
Q Consensus 221 ~~-~~~g~~~~i~~~~g~pI~fig~g~~v~dl~~f~ 255 (458)
.- ...|++.++.+.++.||.|+|+|+...||....
T Consensus 542 tv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~ 577 (587)
T KOG0781|consen 542 TVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLN 577 (587)
T ss_pred chhhHHHHHhhheeecCCceEEEecCcchhhhhhcc
Confidence 74 677899999999999999999999998876533
No 19
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.96 E-value=8.1e-29 Score=257.18 Aligned_cols=248 Identities=29% Similarity=0.439 Sum_probs=203.4
Q ss_pred hhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccc
Q 012680 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 81 (458)
Q Consensus 2 ~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~Gs 81 (458)
++++..|+++||+..++.++++.+.+....... .+.+.+.+.|.+.+......+ . .++++++++|++|+
T Consensus 164 ~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~~~-~--~~~~~i~~vGptGv 232 (424)
T PRK05703 164 AELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVEDI-L--KQGGVVALVGPTGV 232 (424)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccccc-c--cCCcEEEEECCCCC
Confidence 578999999999999999999999876533221 367889999999887543333 2 23569999999999
Q ss_pred cchhHhhHHHHHHH--hcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 82 GKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 82 GKTT~a~~LA~~L~--~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
||||++++||.+++ ..|++|.+|++|+||.++.+++..+++..++++..... +.+ +...+..+ .+||+||||
T Consensus 233 GKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~---~~~-l~~~l~~~--~~~DlVlID 306 (424)
T PRK05703 233 GKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD---PKE-LAKALEQL--RDCDVILID 306 (424)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC---HHh-HHHHHHHh--CCCCEEEEe
Confidence 99999999999998 45899999999999999999999999999998876433 222 23334443 479999999
Q ss_pred CCccccccHHHHHHHHHHHh-hcCcceEEEEEeccchhhHhH-hhhhheeeeeeceeeeecccCCCCCcceeeeeeccCC
Q 012680 160 TAGRLQIDKAMMDELKDVKR-VLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGK 237 (458)
Q Consensus 160 tpg~l~~d~~l~~el~~l~~-~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~ 237 (458)
|||+.+.+...+.++..+.. ...+..+++|++++.+..... .+..|. .+++.++|+||+|.+...|.+.++...+++
T Consensus 307 t~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~~~~vI~TKlDet~~~G~i~~~~~~~~l 385 (424)
T PRK05703 307 TAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLPLDGLIFTKLDETSSLGSILSLLIESGL 385 (424)
T ss_pred CCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEecccccccccHHHHHHHHHCC
Confidence 99999988888888888877 445678999999977754444 445565 677899999999999999999999999999
Q ss_pred ceeEeecCCcc-ccCCCCCcchhhhhhhccc
Q 012680 238 PIKLVGRGERM-EDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 238 pI~fig~g~~v-~dl~~f~p~~~~sr~lG~~ 267 (458)
||.|+++|+++ +|+++|++..++++++|..
T Consensus 386 Pv~yit~Gq~VpdDl~~a~~~~l~~~ll~~~ 416 (424)
T PRK05703 386 PISYLTNGQRVPDDIKVANPEELVRLLLGGF 416 (424)
T ss_pred CEEEEeCCCCChhhhhhCCHHHHHHHHhccc
Confidence 99999999998 8999999999999988754
No 20
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.96 E-value=2.8e-28 Score=254.31 Aligned_cols=248 Identities=29% Similarity=0.368 Sum_probs=194.9
Q ss_pred hhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccc
Q 012680 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 81 (458)
Q Consensus 2 ~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~Gs 81 (458)
.+++..|+++||+..+++++++++.+..... ....++.+.+.+.+.... .....-.++.|++++|++|+
T Consensus 199 ~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~~----------~~~~~l~~~l~~~l~~~~-~~~~~~~~g~Vi~LvGpnGv 267 (484)
T PRK06995 199 AALLKHLLAAGFSAQLVRMLVDNLPEGDDAE----------AALDWVQSALAKNLPVLD-SEDALLDRGGVFALMGPTGV 267 (484)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhhhchh----------HHHHHHHHHHHHHHhhcc-CccccccCCcEEEEECCCCc
Confidence 4788999999999999999999997763221 345556666665553211 11111124689999999999
Q ss_pred cchhHhhHHHHHHH-hcC-CceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 82 GKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 82 GKTT~a~~LA~~L~-~~G-~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
||||++.+||.++. +.| ++|.++++|+||.++++|+..+++..|+++....... +... .+.. ..++|+++||
T Consensus 268 GKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~---Dl~~-aL~~--L~d~d~VLID 341 (484)
T PRK06995 268 GKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAA---DLRL-ALSE--LRNKHIVLID 341 (484)
T ss_pred cHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCch---hHHH-HHHh--ccCCCeEEeC
Confidence 99999999999885 456 5999999999999999999999999998876543322 2222 1222 2578999999
Q ss_pred CCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHh-hhhheeeeeeceeeeecccCCCCCcceeeeeeccCCc
Q 012680 160 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL-VTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238 (458)
Q Consensus 160 tpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~-~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~p 238 (458)
|+|+.+.+..+...+..+.....|.+.+||+|++++...+.. +..|. ..++.|+|+||+|+..+.|.++++...+++|
T Consensus 342 TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~-~~~~~g~IlTKlDet~~~G~~l~i~~~~~lP 420 (484)
T PRK06995 342 TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR-GPGLAGCILTKLDEAASLGGALDVVIRYKLP 420 (484)
T ss_pred CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc-cCCCCEEEEeCCCCcccchHHHHHHHHHCCC
Confidence 999988777666666666555557889999999877655554 45554 5789999999999999999999999999999
Q ss_pred eeEeecCCcc-ccCCCCCcchhhhhhhccc
Q 012680 239 IKLVGRGERM-EDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 239 I~fig~g~~v-~dl~~f~p~~~~sr~lG~~ 267 (458)
|.|+++|+++ +||++|++..++.++++.+
T Consensus 421 I~yvt~GQ~VPeDL~~a~~~~lv~~ll~~~ 450 (484)
T PRK06995 421 LHYVSNGQRVPEDLHLANKKFLLHRAFCAP 450 (484)
T ss_pred eEEEecCCCChhhhccCCHHHHHHHHhcCc
Confidence 9999999999 9999999999999999875
No 21
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.96 E-value=4.6e-28 Score=236.73 Aligned_cols=251 Identities=22% Similarity=0.357 Sum_probs=202.0
Q ss_pred hhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccc
Q 012680 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 81 (458)
Q Consensus 2 ~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~Gs 81 (458)
++|+++|+++||+.+++.++.+.......... . ....+.+.+.+.+...+.+.. + + ..++.+++++|++|+
T Consensus 16 ~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~----~-~~~~vl~~v~~~l~~~~~~~~--~-~-~~~~~~i~~~G~~g~ 86 (270)
T PRK06731 16 QKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT----M-ITEEVIEYILEDMSSHFNTEN--V-F-EKEVQTIALIGPTGV 86 (270)
T ss_pred HHHHHHHHHcCCCHHHHHHHhhcceEEecCCC----c-cccHHHHHHhcccEEeeCCcc--c-c-cCCCCEEEEECCCCC
Confidence 68999999999999999999886543222111 0 112333434444433332211 1 1 225579999999999
Q ss_pred cchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh-cCCcEEEEeC
Q 012680 82 GKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK-KNVDVVIVDT 160 (458)
Q Consensus 82 GKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~-~~~DvVIIDt 160 (458)
||||++..|+..+..+|++|.++++|.+|.++++|+..++...+++++... ++.. +.+++..+.. .++|+|||||
T Consensus 87 GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~---~~~~-l~~~l~~l~~~~~~D~ViIDt 162 (270)
T PRK06731 87 GKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAA-MTRALTYFKEEARVDYILIDT 162 (270)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC---CHHH-HHHHHHHHHhcCCCCEEEEEC
Confidence 999999999999988899999999999999999999988888888877542 3333 3455665542 4799999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEecc-chhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~-~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
||+.+.+...+.++..+.....|++++||++++ .++++.+.++.|.. +++.|+|+||+|++.++|.++++...++.||
T Consensus 163 ~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi 241 (270)
T PRK06731 163 AGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSSAPI 241 (270)
T ss_pred CCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHHHHHHHCcCE
Confidence 999999999999999999988999999999996 55788899999986 9999999999999999999999999999999
Q ss_pred eEeecCCcc-ccCCCCCcchhhhhhhcc
Q 012680 240 KLVGRGERM-EDLEPFYPDRMAGRILGM 266 (458)
Q Consensus 240 ~fig~g~~v-~dl~~f~p~~~~sr~lG~ 266 (458)
.|+++|+++ +|+..++++.++.+++|.
T Consensus 242 ~~it~Gq~vp~di~~a~~~~l~~~~~~~ 269 (270)
T PRK06731 242 VLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred EEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 999999999 689999999998888774
No 22
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.94 E-value=2.9e-26 Score=232.69 Aligned_cols=251 Identities=26% Similarity=0.307 Sum_probs=193.8
Q ss_pred hHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccccc
Q 012680 3 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVG 82 (458)
Q Consensus 3 ~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsG 82 (458)
.+.+.|+++||+..+++++++++.+..-. .+ .+...+++.+.+...+.... .....-....+++++|++|+|
T Consensus 78 ~l~~~L~~~g~~~~l~~~l~~~~~~~~~~------~~-~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~ii~lvGptGvG 149 (374)
T PRK14722 78 ALTKYLFAAGFSAQLVRMIVDNLPEGEGY------DT-LDAAADWAQSVLAANLPVLD-SEDALMERGGVFALMGPTGVG 149 (374)
T ss_pred HHHHHHHHCCCCHHHHHHHHHhhhhhccc------CC-HHHHHHHHHHHHHhcchhhc-CCCccccCCcEEEEECCCCCC
Confidence 56788999999999999999988652100 01 12234444444444332111 111111246799999999999
Q ss_pred chhHhhHHHHHHH-hcC-CceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 83 KTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 83 KTT~a~~LA~~L~-~~G-~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
|||++++||..+. +.| ++|.++++|.||+++.+|+..+++..|+++.......+. ...+..+ .++|+|||||
T Consensus 150 KTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l----~~~l~~l--~~~DlVLIDT 223 (374)
T PRK14722 150 KTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL----QLALAEL--RNKHMVLIDT 223 (374)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH----HHHHHHh--cCCCEEEEcC
Confidence 9999999999876 446 699999999999999999999999999998765443332 2333333 5789999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHh-Hhhhhheeee--------eeceeeeecccCCCCCcceeee
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEI--------GITGAILTKLDGDSRGGAALSV 231 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~-~~~~~~~~~~--------~i~GvIlnk~D~~~~~g~~~~i 231 (458)
+|+.+.+..+..++..+.....+.+++||++++++.+.. +.++.|.... ++.|+|+||+|.+.+.|.++++
T Consensus 224 aG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~~ 303 (374)
T PRK14722 224 IGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 303 (374)
T ss_pred CCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHHH
Confidence 999998888888888887766778999999998875554 4567776542 5899999999999999999999
Q ss_pred eeccCCceeEeecCCcc-ccCCCCCcchhhhhhhccc
Q 012680 232 KEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 232 ~~~~g~pI~fig~g~~v-~dl~~f~p~~~~sr~lG~~ 267 (458)
...+++||.|+++|+++ +|+.+..+..++.+.++..
T Consensus 304 ~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~~~ 340 (374)
T PRK14722 304 VIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCAP 340 (374)
T ss_pred HHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhccc
Confidence 99999999999999999 7899999988888877643
No 23
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.94 E-value=9.3e-26 Score=232.19 Aligned_cols=246 Identities=25% Similarity=0.320 Sum_probs=193.9
Q ss_pred hHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccccc
Q 012680 3 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVG 82 (458)
Q Consensus 3 ~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsG 82 (458)
.+++.|+++||+..+++++++.+.+..... ...+.+.+.+.+.+...... .. -..+.+++++|++|+|
T Consensus 136 ~~~~~L~~~~v~~~la~~l~~~~~~~~~~~----------~~~~~~~~~l~~~l~~~~~~-~~-~~~g~vi~lvGpnG~G 203 (420)
T PRK14721 136 KVLRTLLSAGFSPLLSRHLLEKLPADRDFE----------QSLKKTISLLTLNLRTIGGD-EI-IEQGGVYALIGPTGVG 203 (420)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHhcCCc-cc-cCCCcEEEEECCCCCC
Confidence 578999999999999999999987653211 12333444443333211011 11 1246799999999999
Q ss_pred chhHhhHHHHHHH-hc-CCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 83 KTTVSAKLANYLK-KQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 83 KTT~a~~LA~~L~-~~-G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
|||++.+||..+. .. +.+|.++.+|.+|.++.+|+..+++..|+++..... +.+. ...+..+ .++|+|+|||
T Consensus 204 KTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~---~~dl-~~al~~l--~~~d~VLIDT 277 (420)
T PRK14721 204 KTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD---IADL-QLMLHEL--RGKHMVLIDT 277 (420)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC---HHHH-HHHHHHh--cCCCEEEecC
Confidence 9999999998664 33 478999999999999999999999999999876543 2232 2333333 5799999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccchh-hHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~-~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
+|+.+.+..++.++..+.....+.+++||++++++. +..+.+..|. .+++.|+|+||+|++.+.|.++++...+++||
T Consensus 278 aGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~-~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lPi 356 (420)
T PRK14721 278 VGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ-GHGIHGCIITKVDEAASLGIALDAVIRRKLVL 356 (420)
T ss_pred CCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeeeCCCCccHHHHHHHHhCCCE
Confidence 999988888899998887766778999999998764 4445555665 68999999999999999999999999999999
Q ss_pred eEeecCCcc-ccCCCCCcchhhhhhhccc
Q 012680 240 KLVGRGERM-EDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 240 ~fig~g~~v-~dl~~f~p~~~~sr~lG~~ 267 (458)
.|+++|+++ +|+++|++..++.++++..
T Consensus 357 ~yvt~Gq~VP~Dl~~a~~~~lv~~ll~~~ 385 (420)
T PRK14721 357 HYVTNGQKVPEDLHEANSRYLLHRIFKPS 385 (420)
T ss_pred EEEECCCCchhhhhhCCHHHHHHHHhcCc
Confidence 999999999 8999999999999999855
No 24
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.93 E-value=2.1e-25 Score=224.75 Aligned_cols=215 Identities=34% Similarity=0.507 Sum_probs=180.4
Q ss_pred hHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHH--hcCCceEEeeccccCchhhhHHhhhc
Q 012680 44 LVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILG 121 (458)
Q Consensus 44 ~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~--~~G~kVllVd~D~~rp~a~~~l~~~~ 121 (458)
......+.+..+++.....+. ..++++++++|+.|||||||.++||..+. ...++|.+|..|+||-++++|+.+++
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~--~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya 256 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENLI--VEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYA 256 (407)
T ss_pred hhhhHHHHHHHHHHhhccccc--cccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHH
Confidence 345555666666554433321 12478999999999999999999999988 45689999999999999999999999
Q ss_pred cccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhH
Q 012680 122 EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAA 200 (458)
Q Consensus 122 ~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~ 200 (458)
+..|+|+....+ |.+ +.+++..+ .+||+|+|||+|+.+.|...+.+|..+.....+..++||+++++. ++.-+
T Consensus 257 ~im~vp~~vv~~---~~e-l~~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 257 DIMGVPLEVVYS---PKE-LAEAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred HHhCCceEEecC---HHH-HHHHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 999999876533 333 33445544 478999999999999999999999999999988999999999665 66667
Q ss_pred hhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCcc-ccCCCCCcchhhhhhhccc
Q 012680 201 LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 201 ~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v-~dl~~f~p~~~~sr~lG~~ 267 (458)
++..|. .+++.|+|+||+|.+...|.+.++...++.||.|+..|+++ +|+....|..++++++|.-
T Consensus 331 i~~~f~-~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 331 IIKQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred HHHHhc-cCCcceeEEEcccccCchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence 777776 68999999999999999999999999999999999999999 7899999999999988865
No 25
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.92 E-value=1.3e-24 Score=199.60 Aligned_cols=172 Identities=67% Similarity=1.027 Sum_probs=153.1
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
+++++|++|+||||++.+|+..+++.|++|+++++|++++...+++..+....+++++......++.+++.+.+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 68889999999999999999999999999999999999999999998888888999887666667777777777776667
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeee
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 231 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i 231 (458)
++|+|||||||....+...+.++..+.....++.+++|+++.+.++..+.++.+....++.++|+||+|...+.+.+.++
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~~ 161 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALSI 161 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhhh
Confidence 89999999999988888888888888887778999999999887888888888877778999999999999999999999
Q ss_pred eeccCCceeEee
Q 012680 232 KEVSGKPIKLVG 243 (458)
Q Consensus 232 ~~~~g~pI~fig 243 (458)
...++.|+.|+|
T Consensus 162 ~~~~~~p~~~~~ 173 (173)
T cd03115 162 RAVTGKPIKFIG 173 (173)
T ss_pred HHHHCcCeEeeC
Confidence 999999998876
No 26
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.92 E-value=3e-24 Score=223.92 Aligned_cols=244 Identities=27% Similarity=0.301 Sum_probs=189.6
Q ss_pred hHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccccc
Q 012680 3 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVG 82 (458)
Q Consensus 3 ~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsG 82 (458)
.+.+.|++.||+..+++++++++.+... .......+.+.|.+.+.... ..+- ....+++++|++|+|
T Consensus 296 ~l~~~L~~~Gvs~~la~~L~~~l~~~~~----------~~~~~~~l~~~L~~~l~v~~--~~~l-~~G~vIaLVGPtGvG 362 (559)
T PRK12727 296 QALELMDDYGFDAGLTRDVAMQIPADTE----------LHRGRGLMLGLLSKRLPVAP--VDPL-ERGGVIALVGPTGAG 362 (559)
T ss_pred HHHHHHHHCCCCHHHHHHHHHhhhcccc----------hhhHHHHHHHHHHHhcCcCc--cccc-cCCCEEEEECCCCCC
Confidence 3568899999999999999998865321 12345666777777664221 1111 235799999999999
Q ss_pred chhHhhHHHHHHHhc--CCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 83 KTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 83 KTT~a~~LA~~L~~~--G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
|||++.+||.++..+ |++|.++++|+||.++.+++..++...++++..... ...+...+..+ .+||+|||||
T Consensus 363 KTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d----~~~L~~aL~~l--~~~DLVLIDT 436 (559)
T PRK12727 363 KTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS----AESLLDLLERL--RDYKLVLIDT 436 (559)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc----HHHHHHHHHHh--ccCCEEEecC
Confidence 999999999988765 589999999999999999999998888887765422 22334445543 4799999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
+|+...|...+.++..+.... ....++|+++... .+..+.+..|.. .++.|+|+||+|...+.|.++++...+++||
T Consensus 437 aG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~eii~~f~~-~~~~gvILTKlDEt~~lG~aLsv~~~~~LPI 514 (559)
T PRK12727 437 AGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGSALSVVVDHQMPI 514 (559)
T ss_pred CCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHHHHHHHHHh-hCCeEEEEecCcCccchhHHHHHHHHhCCCE
Confidence 999888887777776665443 4677999998654 566666677754 5789999999999999999999999999999
Q ss_pred eEeecCCcc-ccCCCCCcchhhhhhhccc
Q 012680 240 KLVGRGERM-EDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 240 ~fig~g~~v-~dl~~f~p~~~~sr~lG~~ 267 (458)
.|+++|+++ +||++|++..+++++..+.
T Consensus 515 ~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~ 543 (559)
T PRK12727 515 TWVTDGQRVPDDLHRANAASLVLRLEDLR 543 (559)
T ss_pred EEEeCCCCchhhhhcCCHHHHHHHHHHHH
Confidence 999999999 8999999988888754433
No 27
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.78 E-value=9.1e-19 Score=177.06 Aligned_cols=293 Identities=22% Similarity=0.328 Sum_probs=201.9
Q ss_pred EEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccC--chhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 73 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 73 I~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r--p~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
++++|. +|+||||++..|..+|+++|++|. +|+ |+++|... +....|.++.+.+.+....+.++..+.+..
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq-----pfKvGPDYIDP~~-H~~atG~~srNLD~~mm~~~~v~~~f~~~~ 76 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ-----PFKVGPDYIDPGY-HTAATGRPSRNLDSWMMGEEGVRALFARAA 76 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccc-----ccccCCCccCchh-hhHhhCCccCCCchhhcCHHHHHHHHHHhc
Confidence 456665 999999999999999999999999 766 78888765 666789999999999988888888887754
Q ss_pred hcCCcEEEEeCCccccc--c-HHHHHHHHHHHhhcCcceEEEEEec-cchhhHhHhh---hhheeeeeeceeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQI--D-KAMMDELKDVKRVLNPTEVLLVVDA-MTGQEAAALV---TTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~--d-~~l~~el~~l~~~~~~~~vllVvda-~~g~~~~~~~---~~~~~~~~i~GvIlnk~D~~ 222 (458)
.+.|+.||++...+.- + ..-..+.+++.+.+. .+|+||+|+ ...++++.++ +.|+++++|.|||+|++-+.
T Consensus 77 -~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVgse 154 (451)
T COG1797 77 -ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVGSE 154 (451)
T ss_pred -CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEecCCCH
Confidence 6889999998655431 0 112344556666666 899999999 4456666666 46788999999999999999
Q ss_pred CCCcceeeeeec-cCCceeEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhH
Q 012680 223 SRGGAALSVKEV-SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFND 301 (458)
Q Consensus 223 ~~~g~~~~i~~~-~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~ed 301 (458)
+|...+..+.+. +|+|| +|+.++.++++. | +||||+-- +.|..+.+...+.+..+.+..+|+|.
T Consensus 155 rH~~llr~Ale~~~gv~v--lG~lpr~~~l~l--p----~RHLGLV~-------a~E~~~~~~~~~~~a~~v~~~vDld~ 219 (451)
T COG1797 155 RHYELLRDALEEYTGVPV--LGYLPRDDDLEL--P----SRHLGLVP-------ASERLELEAKLEALAEVVEKHVDLDA 219 (451)
T ss_pred HHHHHHHHHhhhcCCCcE--EEEecCCcccCC--c----cccccccc-------chhhhhHHHHHHHHHHHHHhhCCHHH
Confidence 999888777776 89999 999999999877 7 99999983 33333334455566677788999999
Q ss_pred HHHHHHHHHhhccchhhhhccCCCCCCChHHH----HHH-----HHhhHHHHHH------HHhCCccccc-CccccccCh
Q 012680 302 FLKQTRTVARMGSMSRVIGMIPGMGKITPAQV----REA-----EKSLKIMEAM------IEAMTPEERE-KPELLAESP 365 (458)
Q Consensus 302 l~~~l~~~~~~g~~~~~~~~~pg~~~~~~~~~----~~~-----~~~~~~~~~~------i~smt~~e~~-~p~~~~~~~ 365 (458)
+++....-. ++..-+.-.|..++.....+ +.+ +..++-++.. .+.|..+|.- +-+.
T Consensus 220 l~~ia~~~~---~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~----- 291 (451)
T COG1797 220 LLEIASSAG---PLEPDLSPEPERGNPLGVRIAVARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDA----- 291 (451)
T ss_pred HHHHHhccC---CCCCCccccccccCCcCceEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCE-----
Confidence 988775432 22222222222211100000 001 3455656555 5566665554 2222
Q ss_pred hhhhhhccccCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012680 366 VRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 402 (458)
Q Consensus 366 ~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~ 402 (458)
|=-|-|.++---.+ |.+-+.|++.++++...
T Consensus 292 -----vYlgGGYPElfA~~-L~~n~~~~~~i~~~~~~ 322 (451)
T COG1797 292 -----VYLGGGYPELFAEE-LSANESMRRAIKAFAAA 322 (451)
T ss_pred -----EEeCCCChHHHHHH-HhhCHHHHHHHHHHHHc
Confidence 33466666655444 44555677777777653
No 28
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.71 E-value=8.7e-17 Score=159.23 Aligned_cols=144 Identities=32% Similarity=0.484 Sum_probs=114.9
Q ss_pred hhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccc
Q 012680 2 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 81 (458)
Q Consensus 2 ~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~Gs 81 (458)
.++++.|+++||+..+++++++.+.+. .+.+.+.+.+.+.|.+.+........+ ...+.+++++|++||
T Consensus 137 ~~l~~~L~~~gv~~~la~~L~~~l~~~----------~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~vi~~vGptGv 205 (282)
T TIGR03499 137 AKLLERLLRAGVSPELARELLEKLPER----------ADAEDAWRWLREALEKMLPVKPEEDEI-LEQGGVIALVGPTGV 205 (282)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHhhcc----------CCHHHHHHHHHHHHHHHhccCCccccc-cCCCeEEEEECCCCC
Confidence 578999999999999999999988752 233457788999999988733222222 125789999999999
Q ss_pred cchhHhhHHHHHHHhc-C-CceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 82 GKTTVSAKLANYLKKQ-G-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 82 GKTT~a~~LA~~L~~~-G-~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
||||++++||.+++.+ | ++|.+|++|+||.++.+++..++...++++.... ++.+ +...+..+ .+||+||||
T Consensus 206 GKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~---~~~~-l~~~l~~~--~~~d~vliD 279 (282)
T TIGR03499 206 GKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR---DPKE-LRKALDRL--RDKDLILID 279 (282)
T ss_pred CHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC---CHHH-HHHHHHHc--cCCCEEEEe
Confidence 9999999999999876 5 9999999999999999999999998898886542 2333 34555554 469999999
Q ss_pred CCc
Q 012680 160 TAG 162 (458)
Q Consensus 160 tpg 162 (458)
|||
T Consensus 280 t~G 282 (282)
T TIGR03499 280 TAG 282 (282)
T ss_pred CCC
Confidence 997
No 29
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.67 E-value=4.6e-16 Score=142.35 Aligned_cols=129 Identities=21% Similarity=0.269 Sum_probs=84.4
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
|.+.+++||+||||++.+||.++++.|++|++||+|++++.....+. .......++..+..+...
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~ 66 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR---------------GPMKMGAIKQFLTDVDWG 66 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh---------------CcchHHHHHHHHHHhhcC
Confidence 44556899999999999999999999999999999999975422110 001223344455554446
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc-ch-hhHhHhhhhhe-eeeeeceeeeecccC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QEAAALVTTFN-IEIGITGAILTKLDG 221 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~-~g-~~~~~~~~~~~-~~~~i~GvIlnk~D~ 221 (458)
+||+|||||||.+.. ... .+......+.+++|+.+. .. .++.+....+. ....+.|+|+|+++.
T Consensus 67 ~yD~VIiD~pp~~~~--~~~----~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 67 ELDYLVIDMPPGTGD--EHL----TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCEEEEeCCCCCcH--HHH----HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 899999999998641 111 111112358888888773 22 33333333222 245678999999985
No 30
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.66 E-value=9.7e-17 Score=152.32 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=101.7
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhh--------HH---hh--------------hccccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID--------QL---VI--------------LGEQVG 125 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~--------~l---~~--------------~~~~~g 125 (458)
++|++.||||+||||++.+||.+|++.|+||++||+|++...... .+ .. .....|
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG 80 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCCC
Confidence 468888999999999999999999999999999999998643211 00 00 001246
Q ss_pred cceecCCCccChH-----------HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc
Q 012680 126 VPVYTAGTEVKPS-----------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 194 (458)
Q Consensus 126 v~v~~~~~~~~~~-----------~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~ 194 (458)
+++++++...... ..++ .+..+ ..+||+|||||+|.+...... ..+. .-.++.+++|+++..
T Consensus 81 l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~~-~~l~----~~~ad~vliv~~p~~ 153 (212)
T cd02117 81 VKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGFA-MPIR----EGKADEIYIVTSGEF 153 (212)
T ss_pred cEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceecccc-cccc----cccCcEEEEEecccH
Confidence 6666654422111 1111 22222 368999999998876422210 0110 012488888887732
Q ss_pred -h----hhHhHhhhhhee--eeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCC
Q 012680 195 -G----QEAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 195 -g----~~~~~~~~~~~~--~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~ 246 (458)
. ....+.+..+.. ...+.|+|+|+++...+...+..+.+.++.|+ ++..|
T Consensus 154 ~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~v--l~~IP 210 (212)
T cd02117 154 MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQV--IHFVP 210 (212)
T ss_pred HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHHHHHHHHHHHcCCCE--EEecC
Confidence 1 223334444433 55678999999987633334456666677776 55443
No 31
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.65 E-value=5.9e-16 Score=158.64 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=101.1
Q ss_pred eEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcc--------------ccccceecCC---
Q 012680 71 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE--------------QVGVPVYTAG--- 132 (458)
Q Consensus 71 ~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~--------------~~gv~v~~~~--- 132 (458)
++|+++ |+||+||||++.+||..|++.|+||++||+|+++|.....+..... ..++.....+
T Consensus 108 ~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~~~~~l~ 187 (369)
T PRK11670 108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGYLV 187 (369)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccccHHHhc
Confidence 666665 9999999999999999999999999999999999865322210000 0011100000
Q ss_pred ---C-----ccChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc--chhhHhHhh
Q 012680 133 ---T-----EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALV 202 (458)
Q Consensus 133 ---~-----~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~--~g~~~~~~~ 202 (458)
. .......+++.+....|++||||||||||.+. |.. ..+...+..|.+++|+.+. ...++....
T Consensus 188 ~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~g-d~~-----l~~~~l~aad~viiV~tp~~~s~~da~~~i 261 (369)
T PRK11670 188 TDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTG-DIQ-----LTLAQNIPVTGAVVVTTPQDIALIDAKKGI 261 (369)
T ss_pred CcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCc-hHH-----HHHhhhccCCeEEEEecCchhHHHHHHHHH
Confidence 0 00011234444544346789999999999864 211 1122233347788887662 223444444
Q ss_pred hhh-eeeeeeceeeeecccCCCC-C---------cceeeeeeccCCceeEeecCCcc
Q 012680 203 TTF-NIEIGITGAILTKLDGDSR-G---------GAALSVKEVSGKPIKLVGRGERM 248 (458)
Q Consensus 203 ~~~-~~~~~i~GvIlnk~D~~~~-~---------g~~~~i~~~~g~pI~fig~g~~v 248 (458)
..+ ...+++.|+|+|+.+.... . +....+.+.++.|+ ++..+..
T Consensus 262 ~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~l--l~~IP~~ 316 (369)
T PRK11670 262 VMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQL--LGQMPLH 316 (369)
T ss_pred HHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcE--EEEeCCC
Confidence 433 3467789999999875421 0 12345556677776 5555433
No 32
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.63 E-value=3.6e-16 Score=154.20 Aligned_cols=171 Identities=18% Similarity=0.150 Sum_probs=94.8
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhh------------HHh-----------hhccccccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID------------QLV-----------ILGEQVGVP 127 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~------------~l~-----------~~~~~~gv~ 127 (458)
++|.++|||||||||+|.+||+.|+++|+||++||+|++...... -+. ......|+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~l~ 81 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGGTR 81 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCCCE
Confidence 467777999999999999999999999999999999998643210 010 000122555
Q ss_pred eecCCCccC------hHHHHH-hhHHHHH----hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc--
Q 012680 128 VYTAGTEVK------PSQIAK-QGLEEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-- 194 (458)
Q Consensus 128 v~~~~~~~~------~~~i~~-~~l~~~~----~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~-- 194 (458)
+++++.... ....++ ..++.+. ..+||||||||+|.+..+. +. .......++.+++++.+..
T Consensus 82 ~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~-l~----~~~a~~aad~vlIp~~~e~~s 156 (274)
T PRK13235 82 CTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGG-FA----MPIRDGKAEEIYIVCSGEMMA 156 (274)
T ss_pred EEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCC-cc----cccccccccEEEEEecCchhH
Confidence 554331100 011111 2233321 3579999999987653211 11 0001112488888886621
Q ss_pred --h-hhHhHhhhhh--eeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCcc
Q 012680 195 --G-QEAAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 248 (458)
Q Consensus 195 --g-~~~~~~~~~~--~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v 248 (458)
+ ....+.+... +..+.+.|+|+|+............+.+.++.++ ++..+..
T Consensus 157 l~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~~~~~e~~~~l~~~~~~~l--l~~Ip~~ 213 (274)
T PRK13235 157 MYAANNICKGILKYADAGGVRLGGLICNSRKVDNEREMIEELARKIGTQM--IHFVPRD 213 (274)
T ss_pred HHHHHHHHHHHHHHhhcCCCceeEEEEecCCCCchHHHHHHHHHHcCCce--EEeCCCC
Confidence 1 2223322322 3467778999997542222223344455566555 4555443
No 33
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.62 E-value=5.4e-16 Score=152.87 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=96.0
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhH------------Hhh-----h-------cccccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVI-----L-------GEQVGV 126 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~------------l~~-----~-------~~~~gv 126 (458)
++|.++|||||||||++.+||..|+++|+||++||+|++.+....- +.. . ....|+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~~~i 81 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGDI 81 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCCCCe
Confidence 4677779999999999999999999999999999999987542211 000 0 001244
Q ss_pred ceecCCCccC------hHH----HHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc--c
Q 012680 127 PVYTAGTEVK------PSQ----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--T 194 (458)
Q Consensus 127 ~v~~~~~~~~------~~~----i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~--~ 194 (458)
.+++.+.... ... .+.+.+..+ +.+||||||||||.+..+. +...+ ....+|.+++|+.+. .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~vlID~~~~~~~~~-~~~~~----al~aad~vlip~~p~~~s 155 (273)
T PRK13232 82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAY-TDDLDYVFYDVLGDVVCGG-FAMPI----REGKAKEIYIVASGELMA 155 (273)
T ss_pred EEEeCCCCCCCCCCCCCchhHHHHHHHHcccc-cccCCEEEEecCCCeeECC-Eeccc----cccccceEEEecCchHHH
Confidence 4554332100 000 133444433 3679999999988763221 11000 011348888888662 2
Q ss_pred hhh---HhHhhhhh-eeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCC
Q 012680 195 GQE---AAALVTTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 195 g~~---~~~~~~~~-~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~ 246 (458)
-.. ..+.+..+ +..+.+.|+|+|+.+..........+.+.++.++ ++..+
T Consensus 156 l~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~~~e~l~~~~~~~v--l~~Ip 209 (273)
T PRK13232 156 IYAANNICKGLAKFAKGGARLGGIICNSRNVDGERELLEAFAKKLGSQL--IHFVP 209 (273)
T ss_pred HHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHHHHHHHHHHhCCCe--EEECC
Confidence 122 22333332 3456778999998753322223344555666555 44443
No 34
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.62 E-value=3.9e-15 Score=140.32 Aligned_cols=145 Identities=24% Similarity=0.277 Sum_probs=93.2
Q ss_pred CCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh----------------------hhccccc
Q 012680 69 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV----------------------ILGEQVG 125 (458)
Q Consensus 69 ~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~----------------------~~~~~~g 125 (458)
.+++|+++ +++|+||||++.+||.+|++.|++|++||+|++.|.....+. ......+
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~ 95 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIEN 95 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCC
Confidence 46677777 779999999999999999999999999999998765321110 0011135
Q ss_pred cceecCCCc-cChHH-----HHHhhHHHHHhcCCcEEEEeCCccccc-cHHHHHHHHHHHhhcCcceEEEEEecc-chhh
Q 012680 126 VPVYTAGTE-VKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDAM-TGQE 197 (458)
Q Consensus 126 v~v~~~~~~-~~~~~-----i~~~~l~~~~~~~~DvVIIDtpg~l~~-d~~l~~el~~l~~~~~~~~vllVvda~-~g~~ 197 (458)
+.+++.+.. ..+.. .+++.+..+. ..||+|||||||.... +... +.. .+|.+++|+++. +...
T Consensus 96 l~~l~~g~~~~~~~~~l~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~------~~~--~~D~vilV~~~~~~~~~ 166 (204)
T TIGR01007 96 LFVITSGPVPPNPTELLQSSNFKTLIETLR-KYFDYIIIDTPPIGTVTDAAI------IAR--ACDASILVTDAGEIKKR 166 (204)
T ss_pred EEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHH------HHH--hCCeEEEEEECCCCCHH
Confidence 566654432 22222 2355666654 6899999999985432 2211 111 148999999883 3333
Q ss_pred HhHhhhhhee--eeeeceeeeecccCC
Q 012680 198 AAALVTTFNI--EIGITGAILTKLDGD 222 (458)
Q Consensus 198 ~~~~~~~~~~--~~~i~GvIlnk~D~~ 222 (458)
.+..+....+ +..+.|+|+||++..
T Consensus 167 ~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 167 DVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 3333322222 457899999999865
No 35
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.61 E-value=1.8e-15 Score=146.51 Aligned_cols=164 Identities=22% Similarity=0.343 Sum_probs=96.0
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh------------hHHhh---------hccccccceec
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVI---------LGEQVGVPVYT 130 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~------------~~l~~---------~~~~~gv~v~~ 130 (458)
|.+++++||+||||+|.+||.+|+++|++|++||+|++.+... ..+.. .....|+.+++
T Consensus 3 i~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp 82 (251)
T TIGR01969 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVIP 82 (251)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEEe
Confidence 3444489999999999999999999999999999999643211 01100 00123555665
Q ss_pred CCCccC-----hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhh
Q 012680 131 AGTEVK-----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVT 203 (458)
Q Consensus 131 ~~~~~~-----~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~ 203 (458)
.+.... ..+.+.+.+..+. ..||+|||||||.+... .... + ...|.+++|+++... .++.+...
T Consensus 83 ~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~--~~~~---l---~~ad~vliv~~~~~~s~~~~~~~~~ 153 (251)
T TIGR01969 83 AGVSLEGLRKADPDKLEDVLKEII-DDTDFLLIDAPAGLERD--AVTA---L---AAADELLLVVNPEISSITDALKTKI 153 (251)
T ss_pred CCCCHHHHhhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCHH--HHHH---H---HhCCeEEEEECCCCchHHHHHHHHH
Confidence 443211 1233455566553 67999999999987521 1111 1 224888999887321 22222221
Q ss_pred h-heeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCC
Q 012680 204 T-FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 204 ~-~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~ 246 (458)
. ......+.++|+|+++..........+.+.++.|+ ++..+
T Consensus 154 ~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~~~~~~--l~~Ip 195 (251)
T TIGR01969 154 VAEKLGTAILGVVLNRVTRDKTELGREEIETILEVPV--LGVVP 195 (251)
T ss_pred HHHhcCCceEEEEEECCCchhhhhHHHHHHHhhCCcE--EEEec
Confidence 1 12245567899999986432211223334466666 44443
No 36
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.59 E-value=2.6e-14 Score=140.90 Aligned_cols=142 Identities=20% Similarity=0.320 Sum_probs=93.6
Q ss_pred CCCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh---------------------hhccccc
Q 012680 68 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQVG 125 (458)
Q Consensus 68 ~~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~---------------------~~~~~~g 125 (458)
+.+++|+++ +++|+||||++.+||..+++.|++|++||+|+++|.....+. ......+
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~ 180 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALEN 180 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCC
Confidence 356777777 779999999999999999999999999999998765321110 0111235
Q ss_pred cceecCCCc-cChHH-----HHHhhHHHHHhcCCcEEEEeCCccccc-cHHHHHHHHHHHhhcCcceEEEEEecc-ch-h
Q 012680 126 VPVYTAGTE-VKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDAM-TG-Q 196 (458)
Q Consensus 126 v~v~~~~~~-~~~~~-----i~~~~l~~~~~~~~DvVIIDtpg~l~~-d~~l~~el~~l~~~~~~~~vllVvda~-~g-~ 196 (458)
+.+++.+.. .++.+ .+...+..++ ..||+|||||||.... |...... ..|.+++|+.+. +. .
T Consensus 181 l~~lp~g~~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~~~--------~~d~vilV~~~~~t~~~ 251 (274)
T TIGR03029 181 LSVLPAGAIPPNPQELLARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQIVAT--------RARGTLIVSRVNETRLH 251 (274)
T ss_pred EEEEeCcCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCcccccHHHHHHH--------hCCeEEEEEECCCCCHH
Confidence 667766542 23332 2355566654 6899999999997642 3222222 148899999872 33 3
Q ss_pred hHhHhhhhhe-eeeeeceeeeec
Q 012680 197 EAAALVTTFN-IEIGITGAILTK 218 (458)
Q Consensus 197 ~~~~~~~~~~-~~~~i~GvIlnk 218 (458)
++.+.+..+. .+.++.|+|+|+
T Consensus 252 ~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 252 ELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCC
Confidence 3333333332 357789999995
No 37
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.59 E-value=1.9e-15 Score=148.96 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=92.5
Q ss_pred eEEEeeccccccchhHhhHHHHHHHh-cCCceEEeeccccCchhhh------------HHhh------------hccccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAID------------QLVI------------LGEQVG 125 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~~rp~a~~------------~l~~------------~~~~~g 125 (458)
++|+|+|+|||||||+|.+||+.|++ +|+||++||+|++...... -+.. .....|
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFKD 82 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeCCCC
Confidence 57777799999999999999999997 5999999999998753211 0100 000135
Q ss_pred cceecCCCccC------hHHH----HHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc-
Q 012680 126 VPVYTAGTEVK------PSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT- 194 (458)
Q Consensus 126 v~v~~~~~~~~------~~~i----~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~- 194 (458)
+++++++.... .... +++.+..+ .++||||||||+|.+..+. +...+.. ..++.+++|+.+..
T Consensus 83 l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~iliD~~~~~~~~a-l~~~~~~----~aad~viIp~~p~~~ 156 (275)
T PRK13233 83 IRCVESGGPEPGVGCAGRGVITAIDLMEENGAY-TDDLDFVFFDVLGDVVCGG-FAMPIRD----GKAQEVYIVASGEMM 156 (275)
T ss_pred cEEEECCCCCCCCCCCCcchhHHHHHHHHcCCc-cCCCCEEEEecCCceeecc-ccccchh----ccCceEEEeccccHH
Confidence 66665543221 1111 22333333 3579999999977553221 1100000 12488888887631
Q ss_pred -hh---hHhHhhhh--heeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 195 -GQ---EAAALVTT--FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 195 -g~---~~~~~~~~--~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
-. ...+.+.. .+..+.+.|+|+|+............+.+.++.++
T Consensus 157 sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~~~~~~e~l~~~~~~~~ 207 (275)
T PRK13233 157 AIYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQM 207 (275)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCcHHHHHHHHHHHcCCce
Confidence 12 22222221 24467788999997532221223344555566655
No 38
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.58 E-value=3e-15 Score=146.81 Aligned_cols=169 Identities=19% Similarity=0.206 Sum_probs=94.8
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh------------hHHhhhc------------ccccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVILG------------EQVGV 126 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~------------~~l~~~~------------~~~gv 126 (458)
++|+++|||||||||+|.+||.+|+++|+||++||+|++..... +.+.... ...|+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 81 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGFGGI 81 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecCCCe
Confidence 46777799999999999999999999999999999999864321 1111000 01355
Q ss_pred ceecCCCccChH------H----HHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc-h
Q 012680 127 PVYTAGTEVKPS------Q----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G 195 (458)
Q Consensus 127 ~v~~~~~~~~~~------~----i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~-g 195 (458)
.+++.+...... . .+.+.+..+ ..+||||||||||.+..... ... ......|.+++|+.+.. .
T Consensus 82 ~~ip~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~yD~viID~~g~~~~~~~-~~~----~~~~aaD~vlip~~p~~~s 155 (270)
T cd02040 82 KCVESGGPEPGVGCAGRGVITAINLLEELGAY-EDDLDFVIYDVLGDVVCGGF-AMP----IREGKAQEIYIVTSGEMMA 155 (270)
T ss_pred EEEeCCCCCCCCCCcCcchhhHHHHHHhcCcc-ccCCCEEEEecccCcccCCc-ccc----cccccccEEEEEecCchHH
Confidence 565544321100 0 011122222 25799999999876532111 000 00112488888887632 1
Q ss_pred ----hhHhHhhhhhee--eeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCc
Q 012680 196 ----QEAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 247 (458)
Q Consensus 196 ----~~~~~~~~~~~~--~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~ 247 (458)
....+.+..+.. ...+.|||+|+............+.+.++.++ ++..+.
T Consensus 156 l~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~~~~~~~~~~l~~~~g~~v--l~~Ip~ 211 (270)
T cd02040 156 LYAANNICKGILKYAKSGGVRLGGLICNSRNTDREDELIDAFAKRLGTQM--IHFVPR 211 (270)
T ss_pred HHHHHHHHHHHHHhCccCCCceEEEEEecCCChhHHHHHHHHHHHcCCCe--EeecCC
Confidence 122233333332 45677888887543222233445556677765 454443
No 39
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.58 E-value=1e-14 Score=135.23 Aligned_cols=174 Identities=22% Similarity=0.333 Sum_probs=107.1
Q ss_pred eEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCc-----------------------hhhhH-Hhhhccccc
Q 012680 71 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-----------------------AAIDQ-LVILGEQVG 125 (458)
Q Consensus 71 ~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp-----------------------~a~~~-l~~~~~~~g 125 (458)
++|+++ |+||+||||++++|+..|++.|+||++||+|.--- ....| +...-...+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~n 82 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLEN 82 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCc
Confidence 355555 99999999999999999999999999999997210 01111 111111234
Q ss_pred cceecCCCccC----hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEec--cchhhHh
Q 012680 126 VPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQEAA 199 (458)
Q Consensus 126 v~v~~~~~~~~----~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda--~~g~~~~ 199 (458)
+.++++...-+ ..+-+...++.++..+|||||||||..... ... ..+..+|++++|+.+ ++..++-
T Consensus 83 L~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~--G~~------~A~~~Ad~AiVVtnPEvSsVRDsD 154 (272)
T COG2894 83 LFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQ--GFK------NAVYFADEAIVVTNPEVSSVRDSD 154 (272)
T ss_pred eEecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHH--HHH------hhhhccceEEEEcCCCccccccch
Confidence 44444322111 123345566676667899999999988642 111 122345888988877 3334444
Q ss_pred Hhh---hhhe--eeee---eceeeeecccCC-CCCcceee---eeeccCCceeEeecCCccccCCCC
Q 012680 200 ALV---TTFN--IEIG---ITGAILTKLDGD-SRGGAALS---VKEVSGKPIKLVGRGERMEDLEPF 254 (458)
Q Consensus 200 ~~~---~~~~--~~~~---i~GvIlnk~D~~-~~~g~~~~---i~~~~g~pI~fig~g~~v~dl~~f 254 (458)
+.+ .... ...+ ...+++|+++.. ...|..++ +.+.+.+|+ +|..|..+++-.+
T Consensus 155 RiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~l--iGiiPed~~Vi~a 219 (272)
T COG2894 155 RIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPL--IGVIPEDQDVLRA 219 (272)
T ss_pred hheeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCce--EEeecCchhhhee
Confidence 433 1111 1122 256999999865 33344444 555678888 9999887775544
No 40
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.57 E-value=4.6e-15 Score=148.02 Aligned_cols=171 Identities=16% Similarity=0.136 Sum_probs=99.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-----------hHHhh--------------hccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI--------------LGEQ 123 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-----------~~l~~--------------~~~~ 123 (458)
..+++.+.|||||||||++.+||+.|+++|+||+++|+|++.+... .++.. ....
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~~~~ 84 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVMLTGF 84 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhheeCC
Confidence 3579999999999999999999999999999999999999754321 11100 1112
Q ss_pred cccceecCCCcc------ChHHHHHhhHHHHH----hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc
Q 012680 124 VGVPVYTAGTEV------KPSQIAKQGLEEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 193 (458)
Q Consensus 124 ~gv~v~~~~~~~------~~~~i~~~~l~~~~----~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~ 193 (458)
.|+.+++++... ...... .++.+. +.+||+|+|||++...... +...+ ....+|.+++|+.+.
T Consensus 85 ~gv~llpa~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~yD~vliD~~~~~~~~~-~~~~~----~l~aAD~vIIvttpe 157 (296)
T PRK13236 85 RGVKCVESGGPEPGVGCAGRGIIT--AINFLEENGAYQDLDFVSYDVLGDVVCGG-FAMPI----REGKAQEIYIVTSGE 157 (296)
T ss_pred CCeEEEECCCCCCCCCCcceeehh--hhHHHHhcCccccCCEEEEeccccceecc-ccccc----hhccCCEEEEecCcc
Confidence 467777654211 111111 123332 3689999999976542111 11000 012358888888662
Q ss_pred --chhhHh---Hhh-hhh-eeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCcc
Q 012680 194 --TGQEAA---ALV-TTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 248 (458)
Q Consensus 194 --~g~~~~---~~~-~~~-~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v 248 (458)
.-..+. ... +.. +..+++.|+|+|+.+..........+.+.++.++ ++..+..
T Consensus 158 ~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~~~~~ile~l~~~~g~~v--l~~Ip~~ 217 (296)
T PRK13236 158 MMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDREIELIETLAKRLNTQM--IHFVPRD 217 (296)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCcchHHHHHHHHHHhCccc--eeeCCCC
Confidence 222222 111 111 4467888999998643332233455556677665 4555433
No 41
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.57 E-value=3.2e-14 Score=158.04 Aligned_cols=149 Identities=26% Similarity=0.349 Sum_probs=102.0
Q ss_pred cCCCeEEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh---------------------hhcccc
Q 012680 67 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQV 124 (458)
Q Consensus 67 ~~~p~iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~---------------------~~~~~~ 124 (458)
..++++|++++. +|+||||+|.+||.+|+..|+||++||+|+++|.....+. ......
T Consensus 528 ~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 607 (726)
T PRK09841 528 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKG 607 (726)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCC
Confidence 346788988865 9999999999999999999999999999999875432210 011123
Q ss_pred ccceecCCC-ccChHHH-----HHhhHHHHHhcCCcEEEEeCCccccc-cHHHHHHHHHHHhhcCcceEEEEEecc-ch-
Q 012680 125 GVPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDAM-TG- 195 (458)
Q Consensus 125 gv~v~~~~~-~~~~~~i-----~~~~l~~~~~~~~DvVIIDtpg~l~~-d~~l~~el~~l~~~~~~~~vllVvda~-~g- 195 (458)
++++++.+. ..+|.++ +.+.+..++ ..||+|||||||.+.. |...++. ..|.+++|+.+. +.
T Consensus 608 ~l~vl~~g~~~~~p~ell~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~la~--------~ad~~llVvr~~~t~~ 678 (726)
T PRK09841 608 GFDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVVGR--------SVGTSLLVARFGLNTA 678 (726)
T ss_pred CEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHHHHH--------hCCeEEEEEeCCCCCH
Confidence 677776654 3455543 355555554 6899999999999875 3333322 148889999873 33
Q ss_pred hhHhHhhhhh-eeeeeeceeeeecccCCCC
Q 012680 196 QEAAALVTTF-NIEIGITGAILTKLDGDSR 224 (458)
Q Consensus 196 ~~~~~~~~~~-~~~~~i~GvIlnk~D~~~~ 224 (458)
......+..+ ..+..+.|+|+|+++....
T Consensus 679 ~~~~~~~~~l~~~~~~~~G~VlN~~~~~~~ 708 (726)
T PRK09841 679 KEVSLSMQRLEQAGVNIKGAILNGVIKRAS 708 (726)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeCcccCcc
Confidence 3444444443 2356778999999986543
No 42
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.57 E-value=2.9e-15 Score=149.36 Aligned_cols=172 Identities=19% Similarity=0.183 Sum_probs=98.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh------------hHHhh-------------hccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVI-------------LGEQ 123 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~------------~~l~~-------------~~~~ 123 (458)
+.++|.|+|+||+||||++.+||+.|++.|+||++||+|++.+... +-+.. ....
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGY 82 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheecC
Confidence 3467878899999999999999999999999999999999764321 11100 0112
Q ss_pred cccceecCCCccC------hHHHHH-hhHHHHH-hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc-c
Q 012680 124 VGVPVYTAGTEVK------PSQIAK-QGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-T 194 (458)
Q Consensus 124 ~gv~v~~~~~~~~------~~~i~~-~~l~~~~-~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~-~ 194 (458)
.|+++++++.... ....++ ..++.+. .++||||||||++.+..+. +...+ ....++.+++++.+. .
T Consensus 83 ~gl~lipa~~~~~~~~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~na-l~~~~----~~~aAD~vIIPv~pe~~ 157 (295)
T PRK13234 83 KGIKCVESGGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGG-FAMPI----RENKAQEIYIVMSGEMM 157 (295)
T ss_pred CCeEEEECCCCCCCCCCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECC-Ccccc----ccccCceEEEecCccHH
Confidence 4666665542111 112223 2444432 2579999999977543211 11000 001358888888762 1
Q ss_pred h----hhHhHhhhhh--eeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCc
Q 012680 195 G----QEAAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 247 (458)
Q Consensus 195 g----~~~~~~~~~~--~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~ 247 (458)
. ....+.+... +..+.+.|+|+|+............+.+.++.++ ++..+.
T Consensus 158 Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~~~~~~~e~l~e~~g~~l--l~~Ip~ 214 (295)
T PRK13234 158 ALYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAARLGSKL--IHFVPR 214 (295)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCchHHHHHHHHHHHhCCce--EEECCC
Confidence 1 2222223332 2356788999996543332233444555667665 344443
No 43
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.57 E-value=7.1e-15 Score=146.16 Aligned_cols=162 Identities=16% Similarity=0.170 Sum_probs=94.7
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhH----------Hhh---------------hccccccc
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ----------LVI---------------LGEQVGVP 127 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~----------l~~---------------~~~~~gv~ 127 (458)
|+++|||||||||+|.+||++|++.|+||++||+|++......- +.. .....|+.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 82 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGVD 82 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCeE
Confidence 78899999999999999999999999999999999986432110 000 00013566
Q ss_pred eecCCCccChHH-------HHHhhHHHHH-hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc-h-hh
Q 012680 128 VYTAGTEVKPSQ-------IAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QE 197 (458)
Q Consensus 128 v~~~~~~~~~~~-------i~~~~l~~~~-~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~-g-~~ 197 (458)
+++++......+ .....++.+. ..+||+|||||||.+.... +... +..+|.+++++++.. . ..
T Consensus 83 lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~IiIDt~~~l~~~a-~~aa------l~~AD~viIp~~p~~~sl~~ 155 (290)
T CHL00072 83 CVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVCGG-FAAP------LNYADYCIIITDNGFDALFA 155 (290)
T ss_pred EEeCCCCCCccchhhcccHHHHHHHHHhhccccCCEEEEecCCcceech-hhhh------hhcCCEEEEEecCCHHHHHH
Confidence 665543221111 0011122221 1479999999988753211 1111 123588888887632 1 22
Q ss_pred ---HhHhhhhh--eeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCC
Q 012680 198 ---AAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 198 ---~~~~~~~~--~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~ 246 (458)
..+.++.. +..+.+.|+|+|+++.. ..+....+.++.|+ ++.++
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~---~~~~~~~~~~~~~v--l~~Ip 204 (290)
T CHL00072 156 ANRIAASVREKARTHPLRLAGLVGNRTSKR---DLIDKYVEACPMPV--LEVLP 204 (290)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEeCCCch---hHHHHHHHHcCCce--EEECC
Confidence 22222222 23456789999999743 22333445667776 44554
No 44
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=143.13 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=93.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-----------hHHhh--------------hcccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI--------------LGEQV 124 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-----------~~l~~--------------~~~~~ 124 (458)
.++|+++|||||||||+|.+||.+|+++|+||++||+|++...+. +-+.. .....
T Consensus 2 ~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~ 81 (270)
T PRK13185 2 ALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYEGYN 81 (270)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheeeCCC
Confidence 367888899999999999999999999999999999999753321 10100 00113
Q ss_pred ccceecCCCccCh-------HHHHHhhHHHH-HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-
Q 012680 125 GVPVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG- 195 (458)
Q Consensus 125 gv~v~~~~~~~~~-------~~i~~~~l~~~-~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g- 195 (458)
|+++++.+..... .......+..+ ...+||+|||||||.+..+. +... ...+|.+++++.+...
T Consensus 82 ~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~-~~~~------l~~AD~viip~~~~~~s 154 (270)
T PRK13185 82 GVDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG-FAAP------LQYADYALIVTANDFDS 154 (270)
T ss_pred CcEEEECCCCCCCCCccchhHHHHHHHHHhcCccccCCEEEEecCCCcccCc-ccch------hhhCcEEEEEecCchhh
Confidence 6667655432211 01011112221 13579999999988764221 1111 1124788888866211
Q ss_pred ----hhHhHhhhh--heeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 196 ----QEAAALVTT--FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 196 ----~~~~~~~~~--~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
+...+.+.. .+..+.+.|+|+|+.+.. ..+..+.+.++.++
T Consensus 155 l~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~~---~~~~~~~~~~g~~v 201 (270)
T PRK13185 155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSAGT---DLIDKFNEAVGLKV 201 (270)
T ss_pred HHHHHHHHHHHHhhhhccCCCceEEEEeccChH---HHHHHHHHHcCCCE
Confidence 222332222 244566789999997742 22334455566666
No 45
>CHL00175 minD septum-site determining protein; Validated
Probab=99.56 E-value=1.7e-14 Score=142.73 Aligned_cols=169 Identities=17% Similarity=0.257 Sum_probs=98.1
Q ss_pred CCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh-----------hh-------------ccc
Q 012680 69 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-----------IL-------------GEQ 123 (458)
Q Consensus 69 ~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~-----------~~-------------~~~ 123 (458)
..++|+++ |+||+||||+|.+||.+|++.|++|++||+|++.+.....+. .+ ...
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~ 93 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRW 93 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCC
Confidence 34567666 789999999999999999999999999999997432111000 00 011
Q ss_pred cccceecCCCccC----hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hh
Q 012680 124 VGVPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE 197 (458)
Q Consensus 124 ~gv~v~~~~~~~~----~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~ 197 (458)
.++.+++.+.... ....+.+.+..+....||+|||||||.+.. .....+ ...|.+++|+++... .+
T Consensus 94 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~--~~~~~l------~~aD~viiV~~p~~~si~~ 165 (281)
T CHL00175 94 KNLSLLAISKNRQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDV--GFINAI------APAQEAIVVTTPEITAIRD 165 (281)
T ss_pred CCeEEEeCCCchhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCH--HHHHHH------HhcCeeEEEcCCChHHHHH
Confidence 2444444332211 112345566665533799999999998742 111111 124788888877322 33
Q ss_pred HhHhhhhhee-eeeeceeeeecccCCCCC----cceeeeeeccCCceeEeecCCc
Q 012680 198 AAALVTTFNI-EIGITGAILTKLDGDSRG----GAALSVKEVSGKPIKLVGRGER 247 (458)
Q Consensus 198 ~~~~~~~~~~-~~~i~GvIlnk~D~~~~~----g~~~~i~~~~g~pI~fig~g~~ 247 (458)
+......+.. .....++|+|+++..... -....+.+.++.|+ ++..|.
T Consensus 166 ~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~Ip~ 218 (281)
T CHL00175 166 ADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRDVQEMLGIPL--LGAIPE 218 (281)
T ss_pred HHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHHHHHHhCCCe--EEEccC
Confidence 3333322221 223457999999864211 11223455577776 455543
No 46
>PRK11519 tyrosine kinase; Provisional
Probab=99.56 E-value=6.4e-14 Score=155.50 Aligned_cols=146 Identities=23% Similarity=0.334 Sum_probs=101.0
Q ss_pred CCCeEEEeec-cccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHH---------------------hhhccccc
Q 012680 68 SRPTVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL---------------------VILGEQVG 125 (458)
Q Consensus 68 ~~p~iI~i~G-~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l---------------------~~~~~~~g 125 (458)
.++++|++++ .+|+||||++.+||..|+..|++|++||+|+++|.....+ .......+
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 4568888886 6999999999999999999999999999999887532211 01112246
Q ss_pred cceecCCC-ccChHHH-----HHhhHHHHHhcCCcEEEEeCCccccc-cHHHHHHHHHHHhhcCcceEEEEEec-cchhh
Q 012680 126 VPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA-MTGQE 197 (458)
Q Consensus 126 v~v~~~~~-~~~~~~i-----~~~~l~~~~~~~~DvVIIDtpg~l~~-d~~l~~el~~l~~~~~~~~vllVvda-~~g~~ 197 (458)
+.+++.+. ..+|.+. +.+.++.++ ..||+|||||||.+.. |...+... .|.+++|+.+ .+...
T Consensus 604 l~~lp~g~~~~~~~ell~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~l~~~--------~d~~l~Vvr~~~t~~~ 674 (719)
T PRK11519 604 FDLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAIVGRH--------VGTTLMVARYAVNTLK 674 (719)
T ss_pred EEEEeCCCCCCCHHHHhhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHHHHHHH--------CCeEEEEEeCCCCCHH
Confidence 77777654 4455553 345556554 6899999999998864 33333322 4889999987 34433
Q ss_pred HhHh-hhhh-eeeeeeceeeeecccCC
Q 012680 198 AAAL-VTTF-NIEIGITGAILTKLDGD 222 (458)
Q Consensus 198 ~~~~-~~~~-~~~~~i~GvIlnk~D~~ 222 (458)
.+.. ...+ ....++.|+|+|+++..
T Consensus 675 ~~~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 675 EVETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 3333 3333 23678899999999754
No 47
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.56 E-value=2.4e-14 Score=140.49 Aligned_cols=145 Identities=26% Similarity=0.298 Sum_probs=93.7
Q ss_pred CeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhh--------------------ccccccce
Q 012680 70 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL--------------------GEQVGVPV 128 (458)
Q Consensus 70 p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~--------------------~~~~gv~v 128 (458)
.++|+++ |++|+||||++.+||..+++.|+||+++|+|.++|....-+... ....++.+
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi 136 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSI 136 (265)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEE
Confidence 4555555 99999999999999999999999999999999987644332210 00111222
Q ss_pred ecCCC-ccChHH-----HHHhhHHHHHhcCCcEEEEeCCccccc-cHHHHHHHHHHHhhcCcceEEEEEec-cchhhHhH
Q 012680 129 YTAGT-EVKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA-MTGQEAAA 200 (458)
Q Consensus 129 ~~~~~-~~~~~~-----i~~~~l~~~~~~~~DvVIIDtpg~l~~-d~~l~~el~~l~~~~~~~~vllVvda-~~g~~~~~ 200 (458)
..... ...|.+ .+++.+..+.|..||+|||||||.... +..++ ... ++.+++|+.+ .+....+.
T Consensus 137 ~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~-------~~~-~~g~viVt~p~~~~~~~v~ 208 (265)
T COG0489 137 LPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVL-------QRI-PDGVVIVTTPGKTALEDVK 208 (265)
T ss_pred EecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHH-------hcc-CCeEEEEeCCccchHHHHH
Confidence 22221 233333 346778888887899999999998752 22222 222 4678888877 23333333
Q ss_pred -hhhhh-eeeeeeceeeeecccCC
Q 012680 201 -LVTTF-NIEIGITGAILTKLDGD 222 (458)
Q Consensus 201 -~~~~~-~~~~~i~GvIlnk~D~~ 222 (458)
....+ ....++.|||.|+.+..
T Consensus 209 ka~~~~~~~~~~vlGvv~Nm~~~~ 232 (265)
T COG0489 209 KAIDMLEKAGIPVLGVVENMSYFI 232 (265)
T ss_pred HHHHHHHhcCCceEEEEecCccCc
Confidence 33333 23567899999988754
No 48
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.55 E-value=1e-14 Score=136.93 Aligned_cols=166 Identities=23% Similarity=0.288 Sum_probs=100.9
Q ss_pred EEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccccCchhhhHH----------------hhh--------------
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQL----------------VIL-------------- 120 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~rp~a~~~l----------------~~~-------------- 120 (458)
.|+++|+|||||||+++.|+..|.++ |++|++||+|+ .+....+| +..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 58999999999999999988877766 59999999998 22211111 000
Q ss_pred -------------ccccccceecCCC-------ccChH-HHHHhhHHHHHhcCCcEEEEeCCccc-cccHHHHHHHHHHH
Q 012680 121 -------------GEQVGVPVYTAGT-------EVKPS-QIAKQGLEEAKKKNVDVVIVDTAGRL-QIDKAMMDELKDVK 178 (458)
Q Consensus 121 -------------~~~~gv~v~~~~~-------~~~~~-~i~~~~l~~~~~~~~DvVIIDtpg~l-~~d~~l~~el~~l~ 178 (458)
.+..++.+...+. ...|. .++++.+.++....||+||+||-..+ |+......
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~------ 154 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIE------ 154 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhcccccc------
Confidence 0000111111111 12233 35688888888777999999995443 33222222
Q ss_pred hhcCcceEEEEEeccc-hhhHhHhhhhheeeee--eceeeeecccCCCCCcceeeeeeccCCceeEeecCCccccC
Q 012680 179 RVLNPTEVLLVVDAMT-GQEAAALVTTFNIEIG--ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDL 251 (458)
Q Consensus 179 ~~~~~~~vllVvda~~-g~~~~~~~~~~~~~~~--i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v~dl 251 (458)
..|-+++|+|++. +-..++.++.+...++ -.++|+||+|.. ...+.......+.++ +|..|....+
T Consensus 155 ---~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~--e~~~~~~~~~~~~~v--lg~iP~d~~v 223 (255)
T COG3640 155 ---GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE--EELLRELAEELGLEV--LGVIPYDPEV 223 (255)
T ss_pred ---CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch--hHHHHhhhhccCCeE--EEEccCCHHH
Confidence 2478899999853 2333344444444444 367999999976 333444455567777 6766555443
No 49
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.55 E-value=1.5e-14 Score=142.55 Aligned_cols=170 Identities=18% Similarity=0.198 Sum_probs=94.2
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh------------hHHhh------------hcccccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVI------------LGEQVGV 126 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~------------~~l~~------------~~~~~gv 126 (458)
++|+++|+|||||||+|.+||..|+++|++|++||+|++...+. +-+.. .....|+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l 80 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGGI 80 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCCCE
Confidence 47888999999999999999999999999999999999864321 00100 0012255
Q ss_pred ceecCCCccC------hHHH----HHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc-h
Q 012680 127 PVYTAGTEVK------PSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G 195 (458)
Q Consensus 127 ~v~~~~~~~~------~~~i----~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~-g 195 (458)
.+++++.... .... +.+.+..+. ++||+|||||+|...... +...+ .....|.+++++.+.. .
T Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~yD~iiIDt~~~~~~~~-~~~~~----~~~aAD~viip~~p~~~s 154 (275)
T TIGR01287 81 RCVESGGPEPGVGCAGRGVITAINLLEELGAYE-DDLDFVFYDVLGDVVCGG-FAMPI----REGKAQEIYIVTSGEMMA 154 (275)
T ss_pred EEEeCCCCCccCCCccchhhhHHHHHHHhhhhh-ccCCEEEEeccCcceecc-eeecc----ccccccEEEEEecchHHH
Confidence 5554432110 1111 122233333 579999999987653211 10000 0112488888887622 1
Q ss_pred -h---hHhHhhhhhe--eeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCcc
Q 012680 196 -Q---EAAALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 248 (458)
Q Consensus 196 -~---~~~~~~~~~~--~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v 248 (458)
. ...+.+..+. ....+.++|+|+............+.+.++.++ ++..+..
T Consensus 155 l~~~~~l~~~i~~~~~~~~~~~~giv~n~~~~~~~~~~~e~l~~~~~~~v--l~~Ip~~ 211 (275)
T TIGR01287 155 LYAANNICKGILKYAKSGGVRLGGLICNSRNVDDEKELIDEFAKKLGTQL--IHFVPRS 211 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCeeeEEEEcCCCCchHHHHHHHHHHHhCCce--EEECCCC
Confidence 2 2222222332 245667888887432222223344555566665 4555443
No 50
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.54 E-value=2.3e-14 Score=133.00 Aligned_cols=143 Identities=23% Similarity=0.359 Sum_probs=87.3
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhh---hccc--------cccce--ecCCCccChH
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---LGEQ--------VGVPV--YTAGTEVKPS 138 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~---~~~~--------~gv~v--~~~~~~~~~~ 138 (458)
|.+.+++||+||||+|.+||.+|+++|++|+++|+|++.+........ .... ..+.. +..+......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDP 80 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHH
Confidence 456678999999999999999999999999999999988764322110 0000 00000 0000000123
Q ss_pred HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--h---hHhHhhhhheeeeeece
Q 012680 139 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q---EAAALVTTFNIEIGITG 213 (458)
Q Consensus 139 ~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~---~~~~~~~~~~~~~~i~G 213 (458)
..+++.+..+....||+|||||||..... ...+ ...++.+++++++... . ...+.+..+.....+.+
T Consensus 81 ~~l~~~l~~l~~~~yD~iiiD~~~~~~~~------~~~~--l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 152 (195)
T PF01656_consen 81 ELLREILESLIKSDYDYIIIDTPPGLSDP------VRNA--LAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIG 152 (195)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEECSSSSHH------HHHH--HHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEE
T ss_pred HHHHHHHHHhhhccccceeecccccccHH------HHHH--HHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEE
Confidence 34566677755455999999999987532 1111 1235888888887321 2 22333333333466889
Q ss_pred eeeecccCC
Q 012680 214 AILTKLDGD 222 (458)
Q Consensus 214 vIlnk~D~~ 222 (458)
+|+|+++..
T Consensus 153 vv~N~v~~~ 161 (195)
T PF01656_consen 153 VVINRVDPG 161 (195)
T ss_dssp EEEEEETSC
T ss_pred EEEeeeCCC
Confidence 999999765
No 51
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.54 E-value=1.8e-14 Score=141.49 Aligned_cols=164 Identities=23% Similarity=0.252 Sum_probs=94.2
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchh-----------hhHHhh--------------hcccccc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI--------------LGEQVGV 126 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a-----------~~~l~~--------------~~~~~gv 126 (458)
+|+++|||||||||+|.+||.+|+++|+||++||+|++.... .+-+.. .....++
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGGV 81 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheEEECCCCc
Confidence 577779999999999999999999999999999999975321 111100 0011356
Q ss_pred ceecCCCccChH-------HHHHhhHHHH-HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---
Q 012680 127 PVYTAGTEVKPS-------QIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--- 195 (458)
Q Consensus 127 ~v~~~~~~~~~~-------~i~~~~l~~~-~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--- 195 (458)
++++++...... ......++.. ...+||+|||||||.+.... +... +..+|.+++++.+...
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~-~~~a------l~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 82 DCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG-FAAP------LNYADYALIVTDNDFDSIF 154 (267)
T ss_pred EEEEcCCCCCCccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc-chhh------hhhcCEEEEEecCCcccHH
Confidence 666554322110 0001112221 12479999999998764221 1111 1124888888876321
Q ss_pred --hhHhHhhhhh--eeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCc
Q 012680 196 --QEAAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 247 (458)
Q Consensus 196 --~~~~~~~~~~--~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~ 247 (458)
....+.+... +..+.+.|+|+|+++... .+..+.+.++.|+ ++..+.
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~~---~i~~~~~~~~~~v--l~~Ip~ 205 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDKTD---LIDKFVEAVGMPV--LAVLPL 205 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCHHH---HHHHHHHhCCCCE--EEEecC
Confidence 1222222222 335667889999998532 2233444567666 444444
No 52
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.54 E-value=1.5e-14 Score=143.08 Aligned_cols=170 Identities=18% Similarity=0.158 Sum_probs=92.7
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-----------hHHhh------------hccccccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI------------LGEQVGVP 127 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-----------~~l~~------------~~~~~gv~ 127 (458)
++|+++|+|||||||+|.+||.+|+++|+||++||+|++..... +-+.. .....|+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~~~~~l~ 81 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYEGFNGIY 81 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheeeCCCCcE
Confidence 46778899999999999999999999999999999999853221 11100 00123556
Q ss_pred eecCCCccC------hHHHH-HhhHH---HHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc-h-
Q 012680 128 VYTAGTEVK------PSQIA-KQGLE---EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G- 195 (458)
Q Consensus 128 v~~~~~~~~------~~~i~-~~~l~---~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~-g- 195 (458)
+++.+.... ..... ...+. .+...+||||||||||.+.... +........+|.+++|+.+.. .
T Consensus 82 lipa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~-----l~~~~~~~aAD~vlIp~~p~~~si 156 (279)
T PRK13230 82 CVESGGPEPGYGCAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGG-----FAMPLQKGLADDVYIVTTCDPMAI 156 (279)
T ss_pred EEECCCCCCCCCcCCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCC-----ccccccccccceEEEeccchHHHH
Confidence 665543211 01110 11111 1122479999999988653211 000001112488888887732 1
Q ss_pred h---hHhHhhhhhe--eeeeeceeeeecccCCCC-CcceeeeeeccCCceeEeecCCcc
Q 012680 196 Q---EAAALVTTFN--IEIGITGAILTKLDGDSR-GGAALSVKEVSGKPIKLVGRGERM 248 (458)
Q Consensus 196 ~---~~~~~~~~~~--~~~~i~GvIlnk~D~~~~-~g~~~~i~~~~g~pI~fig~g~~v 248 (458)
. ...+.+..+. ....+.||+.|. ..... ......+.+.++.++ ++..+..
T Consensus 157 ~~~~~ll~~i~~~~~~~~~~i~gIv~n~-r~~~~~~~~~e~l~~~~g~~v--l~~Ip~~ 212 (279)
T PRK13230 157 YAANNICKGIKRFAKRGKSALGGIIYNG-RSVIDAPDIVEEFAKKIGTNV--IGKIPMS 212 (279)
T ss_pred HHHHHHHHHHHHHhhcCCCcceEEEEec-cCCCchhHHHHHHHHHhCCcE--EEECCCC
Confidence 2 2223333332 245566777552 22221 233445556677776 4555443
No 53
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.54 E-value=1e-14 Score=143.24 Aligned_cols=158 Identities=23% Similarity=0.262 Sum_probs=90.4
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-----------hHHh--------------hhcccccc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLV--------------ILGEQVGV 126 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-----------~~l~--------------~~~~~~gv 126 (458)
+|++.|||||||||+|.+||.+|+++|+||++||+|++...+. +-+. ......|+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGYGGV 81 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCCCCe
Confidence 4666699999999999999999999999999999999753210 1010 00111366
Q ss_pred ceecCCCccChH-------HHHHhhHHHH-HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--h
Q 012680 127 PVYTAGTEVKPS-------QIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q 196 (458)
Q Consensus 127 ~v~~~~~~~~~~-------~i~~~~l~~~-~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~ 196 (458)
.+++++...... ......+... ...+||+|||||||.+..... ... ...+|.+++++.+... .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViID~~~~~~~~~~-~~~------l~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 82 DCVEAGGPPAGSGCGGYVVGETVKLLKEHHILDDYDVILFDVLGDVVCGGF-ATP------LQYADYALVVAANDFDALF 154 (268)
T ss_pred EEEecCCCCCCCcccceehhhhHHHhhhccccccCCEEEEecCCccccCcc-ccc------hhhcCEEEEEecCchhHHH
Confidence 666544322110 0001112211 135799999999887532110 000 1124777777765211 1
Q ss_pred ---hHhHhhhh--heeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 197 ---EAAALVTT--FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 197 ---~~~~~~~~--~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
...+.+.. .+..+.+.|+|+|+++.. .....+.+.++.|+
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~---~~~~~~~~~~~~~v 199 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDAT---DLIERFNERVGMPV 199 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCChH---HHHHHHHHHcCCCE
Confidence 22222222 134566789999999865 22333444567766
No 54
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.53 E-value=3.5e-14 Score=130.93 Aligned_cols=158 Identities=23% Similarity=0.300 Sum_probs=87.7
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcccccccee--cCCCccCh---------HH-
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY--TAGTEVKP---------SQ- 139 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~--~~~~~~~~---------~~- 139 (458)
|.+.+++||+||||++.+||..| ++|+++|+|+++|.....+. .....+..+. ......+. ..
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLK-PEIEEEEDFIVGGKKAVIDPELCISCGLCGKL 76 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcC-CCccccccceecCCceEEchhhhccccchHHH
Confidence 56677999999999999999999 79999999999876533221 1111111111 00000000 11
Q ss_pred --HHHhhHH-HHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc-h-hhHhHhhhhhee-eeeece
Q 012680 140 --IAKQGLE-EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEAAALVTTFNI-EIGITG 213 (458)
Q Consensus 140 --i~~~~l~-~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~-g-~~~~~~~~~~~~-~~~i~G 213 (458)
.+.+.+. ......||+|||||||.... ... .. ....|.+++|+.+.. . ..+.+....+.. +.+ .+
T Consensus 77 ~~~~~~~~~~~~~~~~~d~viiDtpp~~~~--~~~----~~--l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~ 147 (179)
T cd03110 77 VTEVRKHAKEIAKAEGAELIIIDGPPGIGC--PVI----AS--LTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VG 147 (179)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEECcCCCcH--HHH----HH--HHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EE
Confidence 1111111 11236899999999988642 111 11 123478888887732 2 222222222211 223 37
Q ss_pred eeeecccCCCCC-cceeeeeeccCCceeEeecC
Q 012680 214 AILTKLDGDSRG-GAALSVKEVSGKPIKLVGRG 245 (458)
Q Consensus 214 vIlnk~D~~~~~-g~~~~i~~~~g~pI~fig~g 245 (458)
+|+|++|..... ..+..+.+.+|.|+ ++..
T Consensus 148 vV~N~~~~~~~~~~~~~~~~~~~~~~v--l~~i 178 (179)
T cd03110 148 VVINKYDLNDEIAEEIEDYCEEEGIPI--LGKI 178 (179)
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCe--EEeC
Confidence 999999875332 23344555678777 6554
No 55
>PHA02518 ParA-like protein; Provisional
Probab=99.53 E-value=9.3e-14 Score=130.91 Aligned_cols=136 Identities=21% Similarity=0.212 Sum_probs=81.8
Q ss_pred EEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 72 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 72 iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
+|.++ .+||+||||+|.+||.+|+++|++|++||+|++++...+.-. . .. +.+.++.... ...+...+..+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~-~-~~-~~~~i~~~~~---~~~~~~~l~~~~- 74 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEA-R-EE-GEPLIPVVRM---GKSIRADLPKVA- 74 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHh-c-cc-CCCCCchhhc---cHHHHHHHHHHh-
Confidence 45555 789999999999999999999999999999999875532111 1 10 1111111110 122334444443
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-----hhHhHhhh---hheeeeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-----QEAAALVT---TFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-----~~~~~~~~---~~~~~~~i~GvIlnk~D~~ 222 (458)
..||+|||||||.... .... +. ...|.+++++.+... ....+.+. .++......++|+|+++..
T Consensus 75 ~~~d~viiD~p~~~~~---~~~~---~l--~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDSE---LARA---AL--RIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCccH---HHHH---HH--HHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 6899999999998541 1111 11 124788888877321 12222222 2334455667888987644
No 56
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.53 E-value=2.6e-13 Score=128.43 Aligned_cols=140 Identities=22% Similarity=0.350 Sum_probs=88.9
Q ss_pred CCeEEEee-ccccccchhHhhHHHHHHHh-cCCceEEeeccccCchhhhH------------Hhh----------hcccc
Q 012680 69 RPTVILLA-GLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQ------------LVI----------LGEQV 124 (458)
Q Consensus 69 ~p~iI~i~-G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~~rp~a~~~------------l~~----------~~~~~ 124 (458)
..++|+++ +++|+||||++.+||.+|++ .|++|++||+|++.+..... +.. .....
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~~ 113 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIG 113 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCCC
Confidence 35677777 67999999999999999997 69999999999987542111 100 00123
Q ss_pred ccceecCCCccC-hH-----HHHHhhHHHHHhcCC--cEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc-ch
Q 012680 125 GVPVYTAGTEVK-PS-----QIAKQGLEEAKKKNV--DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG 195 (458)
Q Consensus 125 gv~v~~~~~~~~-~~-----~i~~~~l~~~~~~~~--DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~-~g 195 (458)
++.+++.+.... +. ..+.+.+..++ ..| |+||||||+...... ...+.. ..|.+++|+.+. +.
T Consensus 114 ~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~-----~~~l~~--~aD~viiV~~~~~~~ 185 (207)
T TIGR03018 114 RLSLLPAGRRHPNPTELLASQRMRSLLHELA-RRYPDRIIIIDTPPLLVFSE-----ARALAR--LVGQIVLVVEEGRTT 185 (207)
T ss_pred CEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hhCCCCEEEEECCCCcchhH-----HHHHHH--hCCEEEEEEECCCCC
Confidence 556665544322 21 23455666655 456 999999999875321 111111 148899999883 33
Q ss_pred -hhHhHhhhhheeeeeeceeeee
Q 012680 196 -QEAAALVTTFNIEIGITGAILT 217 (458)
Q Consensus 196 -~~~~~~~~~~~~~~~i~GvIln 217 (458)
..+.+....+. ..++.|+|+|
T Consensus 186 ~~~~~~~~~~l~-~~~~~G~v~N 207 (207)
T TIGR03018 186 QEAVKEALSALE-SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeC
Confidence 33333333344 7789999987
No 57
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.52 E-value=1e-13 Score=143.92 Aligned_cols=161 Identities=20% Similarity=0.200 Sum_probs=93.2
Q ss_pred CeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhh-------------HH---hh-------------
Q 012680 70 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-------------QL---VI------------- 119 (458)
Q Consensus 70 p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~-------------~l---~~------------- 119 (458)
.++|.++ .+|||||||+|.+||.+|+.+|+||++||+|++...... .+ ..
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~i~ 200 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIR 200 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCCccccccccccHHHHHhccccCCCHHHhee
Confidence 3677776 789999999999999999999999999999998532210 00 00
Q ss_pred hccccccceecCCCccChH-------------------HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhh
Q 012680 120 LGEQVGVPVYTAGTEVKPS-------------------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180 (458)
Q Consensus 120 ~~~~~gv~v~~~~~~~~~~-------------------~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~ 180 (458)
.....|+++++++...... ..+++++..+. ..||+|||||||.+... .+..+
T Consensus 201 ~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~--------t~~al 271 (405)
T PRK13869 201 PTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFL--------TLSGL 271 (405)
T ss_pred ccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHH--------HHHHH
Confidence 0011345555543211100 12445555554 67999999999987521 11122
Q ss_pred cCcceEEEEEeccch-----hhHhH-------hhhhhee--eeeeceeeeecccCCCCC--cceeeeeeccCCce
Q 012680 181 LNPTEVLLVVDAMTG-----QEAAA-------LVTTFNI--EIGITGAILTKLDGDSRG--GAALSVKEVSGKPI 239 (458)
Q Consensus 181 ~~~~~vllVvda~~g-----~~~~~-------~~~~~~~--~~~i~GvIlnk~D~~~~~--g~~~~i~~~~g~pI 239 (458)
..+|.+++++.+..- ..... .+..... .+.+.+|++|++|..... .....+.+.++-++
T Consensus 272 ~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~~~~~~~~~~l~~~~~~~v 346 (405)
T PRK13869 272 CAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVAALLRNMFEDHV 346 (405)
T ss_pred HHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCCcHHHHHHHHHHHHhhhhh
Confidence 224777777765211 12221 1122222 234568999999975332 22333444455433
No 58
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.51 E-value=1.7e-13 Score=131.81 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=81.3
Q ss_pred EEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 72 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 72 iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
+|.++ .|||+||||++.+||.+|+++|++|++||+|++++.....-. .......+.............+...++.+..
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKEN-ALRSNTWDPACEVYAADELPLLEAAYEDAEL 81 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHh-hccccCCCccceecCCCHHHHHHHHHHHHhh
Confidence 45555 889999999999999999999999999999999875432111 1111001100000111122445556666554
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--h---hHhHhhh----hheeeeeeceeeeecccC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q---EAAALVT----TFNIEIGITGAILTKLDG 221 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~---~~~~~~~----~~~~~~~i~GvIlnk~D~ 221 (458)
.+||+|||||||.... ... .. ....|.+++.+.+... . .....+. ..+..+.. .+++|+++.
T Consensus 82 ~~yD~iiID~pp~~~~---~~~---~a--l~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~-~iv~~~~~~ 152 (231)
T PRK13849 82 QGFDYALADTHGGSSE---LNN---TI--IASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AILRQRVPV 152 (231)
T ss_pred CCCCEEEEeCCCCccH---HHH---HH--HHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeccc
Confidence 6799999999998741 111 11 1123677766655221 1 1222221 22334433 499999874
No 59
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.51 E-value=5.5e-14 Score=135.83 Aligned_cols=144 Identities=20% Similarity=0.144 Sum_probs=84.5
Q ss_pred EEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-------------hHHh--------hhcccccccee
Q 012680 72 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLV--------ILGEQVGVPVY 129 (458)
Q Consensus 72 iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-------------~~l~--------~~~~~~gv~v~ 129 (458)
+|+++ ++||+||||+|.+||.+|+++|++|++||+|++.+... +.+. ......++.++
T Consensus 3 iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~i 82 (246)
T TIGR03371 3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLFL 82 (246)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEEe
Confidence 45554 78999999999999999999999999999999864210 0000 00112455666
Q ss_pred cCCCccC---------hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc-h-hhH
Q 012680 130 TAGTEVK---------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEA 198 (458)
Q Consensus 130 ~~~~~~~---------~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~-g-~~~ 198 (458)
+.+.... ....+++.+..+....||+|||||||..... .. .+. ...|.+++|+.+.. . ..+
T Consensus 83 p~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~---~~---~~l--~~ad~vii~~~~~~~s~~~~ 154 (246)
T TIGR03371 83 PFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPI---TR---QAL--AAADLVLVVVNADAACYATL 154 (246)
T ss_pred cCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHH---HH---HHH--HhCCeEEEEeCCCHHHHHHH
Confidence 5432111 1223445555554444699999999976421 11 111 22488888887732 1 122
Q ss_pred hHhhhhhee---eeeeceeeeecccCCC
Q 012680 199 AALVTTFNI---EIGITGAILTKLDGDS 223 (458)
Q Consensus 199 ~~~~~~~~~---~~~i~GvIlnk~D~~~ 223 (458)
.+.+..+.. .....++|+|+++...
T Consensus 155 ~~~~~~l~~~~~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 155 HQQALALFAGSGPRIGPHFLINQFDPAR 182 (246)
T ss_pred HHHHHHHhhcccccccceEEeeccCcch
Confidence 212222211 1112579999998653
No 60
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.50 E-value=1.5e-13 Score=153.81 Aligned_cols=148 Identities=21% Similarity=0.239 Sum_probs=96.9
Q ss_pred CCCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh---------------------hhccccc
Q 012680 68 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQVG 125 (458)
Q Consensus 68 ~~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~---------------------~~~~~~g 125 (458)
.++++|+|+ .++|+||||+|.+||..|++.|++|++||+|+++|.....+. ......+
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 467788887 669999999999999999999999999999999875332221 1112346
Q ss_pred cceecCCC-ccChHHH-----HHhhHHHHHhcCCcEEEEeCCccccc-cHHHHHHHHHHHhhcCcceEEEEEecc-ch-h
Q 012680 126 VPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDAM-TG-Q 196 (458)
Q Consensus 126 v~v~~~~~-~~~~~~i-----~~~~l~~~~~~~~DvVIIDtpg~l~~-d~~l~~el~~l~~~~~~~~vllVvda~-~g-~ 196 (458)
+++++.+. ...|.+. +.+.+..++ ..||+|||||||.+.. |...+. . ..|.+++|+.+. +. .
T Consensus 624 l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~~~l~------~--~~D~vl~v~~~~~~~~~ 694 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDMRAAA------R--LAIIMLLVTAYDRVVVE 694 (754)
T ss_pred eeEecCCCCCCCHHHHhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHHHHhh------h--hCCeEEEEEEeCceeHH
Confidence 66776654 2233333 345566654 6899999999998753 221111 1 147888888762 22 2
Q ss_pred hHhHhhhhhe-eeeeeceeeeecccCCCC
Q 012680 197 EAAALVTTFN-IEIGITGAILTKLDGDSR 224 (458)
Q Consensus 197 ~~~~~~~~~~-~~~~i~GvIlnk~D~~~~ 224 (458)
...+.+..+. ...++.|+|+|++|....
T Consensus 695 ~~~~~~~~l~~~~~~~~GvvlN~~~~~~~ 723 (754)
T TIGR01005 695 CGRADAQGISRLNGEVTGVFLNMLDPNDE 723 (754)
T ss_pred HHHHHHHHHHhcCCceEEEEecCCChhhh
Confidence 2222222221 245678999999997644
No 61
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.49 E-value=1.4e-13 Score=141.84 Aligned_cols=162 Identities=18% Similarity=0.238 Sum_probs=92.9
Q ss_pred CCCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeec-cccCchhhh----------------HHhh----------
Q 012680 68 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAID----------------QLVI---------- 119 (458)
Q Consensus 68 ~~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~-D~~rp~a~~----------------~l~~---------- 119 (458)
+++++|.++ .||||||||+|.+||.+|+.+|+||++||+ |++...... .+..
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~i 183 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAI 183 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcCccccccccccHHHHHhCCCcchHhhe
Confidence 346777776 889999999999999999999999999996 997642110 0000
Q ss_pred -hccccccceecCCCcc------------------ChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhh
Q 012680 120 -LGEQVGVPVYTAGTEV------------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 180 (458)
Q Consensus 120 -~~~~~gv~v~~~~~~~------------------~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~ 180 (458)
.....|+++++.+... .+...++++++.+. .+||+|||||||.+.. ..... +
T Consensus 184 ~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~--lt~nA------L 254 (387)
T PHA02519 184 KPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGT--GTINV------V 254 (387)
T ss_pred ecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccH--HHHHH------H
Confidence 0011355555543211 12234555666554 6899999999999852 11111 1
Q ss_pred cCcceEEEEEeccch-----hhHhHhhhhhee-------eeeeceeeeecccCCC-CC-c-ceeeeeeccCCce
Q 012680 181 LNPTEVLLVVDAMTG-----QEAAALVTTFNI-------EIGITGAILTKLDGDS-RG-G-AALSVKEVSGKPI 239 (458)
Q Consensus 181 ~~~~~vllVvda~~g-----~~~~~~~~~~~~-------~~~i~GvIlnk~D~~~-~~-g-~~~~i~~~~g~pI 239 (458)
..+|.+++++.+..- ......+..+.. ... ..+++|++|... .. . ....+.+.+|-.+
T Consensus 255 ~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~-l~il~t~~~~~~~~~~~~i~~~l~~~~g~~v 327 (387)
T PHA02519 255 CAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPV-VRLLLTKYSLTVGNQSRWMEEQIRNTWGSMV 327 (387)
T ss_pred HHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCC-eEEEEeeECCCCchHHHHHHHHHHHHhcccc
Confidence 223777777755211 111222211110 111 228999999753 21 2 2344556666554
No 62
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=5.5e-14 Score=134.62 Aligned_cols=169 Identities=22% Similarity=0.283 Sum_probs=106.3
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh--------------hhccccccceecCCCcc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV--------------ILGEQVGVPVYTAGTEV 135 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~--------------~~~~~~gv~v~~~~~~~ 135 (458)
-.|++++|+||+||||++.+||.+|++.|++|.++|.|.+.|..-.-+- ......++.+...+.-.
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl 127 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLL 127 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEeeeec
Confidence 3466666999999999999999999999999999999999886321111 00111233333222111
Q ss_pred C------------hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCc-ceEEEEEec--cchhhHhH
Q 012680 136 K------------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP-TEVLLVVDA--MTGQEAAA 200 (458)
Q Consensus 136 ~------------~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~-~~vllVvda--~~g~~~~~ 200 (458)
. ....+++.+....|.+.||+||||||... .+.-.+...+.. +.+++|.-+ ..-+++..
T Consensus 128 ~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGts------Dehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K 201 (300)
T KOG3022|consen 128 KPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTS------DEHLSLVQFLRESDGAVIVTTPQEVALQDVRK 201 (300)
T ss_pred CCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCC------hhhhheeecccccCceEEEeCchhhhhHHHHh
Confidence 1 11356777777788999999999999875 222223333333 566666544 22244444
Q ss_pred hhhhhe-eeeeeceeeeecccCC----CCC------cceeeeeeccCCceeEeecCC
Q 012680 201 LVTTFN-IEIGITGAILTKLDGD----SRG------GAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 201 ~~~~~~-~~~~i~GvIlnk~D~~----~~~------g~~~~i~~~~g~pI~fig~g~ 246 (458)
.+..+. ..+++.|+|-|+.--. .+. +....+++.+|+|. +|..|
T Consensus 202 ~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~--Lg~iP 256 (300)
T KOG3022|consen 202 EIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPL--LGSLP 256 (300)
T ss_pred hhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCe--EeecC
Confidence 444332 3788899999987432 111 33455667788887 77664
No 63
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.48 E-value=9.9e-14 Score=127.11 Aligned_cols=140 Identities=21% Similarity=0.349 Sum_probs=84.1
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
+.+++++||+||||++.+||.+|+++|++|++||+|++.+.....+. .... . .....+ +. .
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~-~~~~------~---~~~~~~--------~~-~ 62 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILG-LENR------V---VYTLHD--------VL-A 62 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhcc-cccc------C---Ccchhh--------cc-c
Confidence 45566899999999999999999999999999999998654322110 0000 0 000001 11 1
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhhe-eeeeeceeeeecccCCCCCc--
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDSRGG-- 226 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlnk~D~~~~~g-- 226 (458)
+ |+|||||||..... ....+ ...|.+++|+++... ..+........ ......++|+|+++......
T Consensus 63 ~-d~viiD~p~~~~~~--~~~~l------~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 133 (179)
T cd02036 63 G-DYILIDSPAGIERG--FITAI------APADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGD 133 (179)
T ss_pred C-CEEEEECCCCCcHH--HHHHH------HhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhh
Confidence 1 99999999976521 11111 124788888877322 22323222222 13456789999998764321
Q ss_pred ceeeeeeccCCce
Q 012680 227 AALSVKEVSGKPI 239 (458)
Q Consensus 227 ~~~~i~~~~g~pI 239 (458)
....+.+.++.|+
T Consensus 134 ~~~~~~~~~~~~v 146 (179)
T cd02036 134 MVEDIEEILGVPL 146 (179)
T ss_pred HHHHHHHHhCCCE
Confidence 1234455567776
No 64
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.48 E-value=6.8e-14 Score=137.14 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=89.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhh-----------HHhh----------hccccccce
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-----------QLVI----------LGEQVGVPV 128 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~-----------~l~~----------~~~~~gv~v 128 (458)
+++|+++++||+||||+|.+||.+|++.| +|++||+|++...... .+.. .....++.+
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGILC 80 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCeEE
Confidence 35777779999999999999999999999 9999999998632210 0100 000124444
Q ss_pred ecCCCcc------ChHH----HHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc-h--
Q 012680 129 YTAGTEV------KPSQ----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-- 195 (458)
Q Consensus 129 ~~~~~~~------~~~~----i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~-g-- 195 (458)
++.+... .... .+.+.+..+ +++||+|||||+|.+..+. +...+. ....|.+++++.+.. .
T Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViIDt~~~~~~~~-~~~~~~----~~aaD~vlip~~p~~~si~ 154 (264)
T PRK13231 81 VESGGPEPGVGCAGRGVIVAMNLLENLGVF-DEDIDVVIYDVLGDVVCGG-FSVPLR----EDYADEVYIVTSGEYMSLY 154 (264)
T ss_pred EEcCCCCCCCCCcCceeeehhhhHHhhccc-cCCCCEEEEecCCCceEcc-cccccc----ccccceeEEEecCchhHHH
Confidence 4433210 0110 012233333 3679999999988653221 100000 013488888887632 2
Q ss_pred --hhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 196 --QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 196 --~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
....+.+..++. .+.|+|.|+.+..........+.+.++.++
T Consensus 155 ~~~~~~~~i~~~~~--~~~~vv~~~~~~~~~~~~~~~l~~~~~~~v 198 (264)
T PRK13231 155 AANNIARGIKKLKG--KLGGIICNCRGIDNEVEIVSEFASRIGSRI 198 (264)
T ss_pred HHHHHHHHHHHcCC--cceEEEEcCCCCccHHHHHHHHHHHhCCCe
Confidence 222222332322 346788887764433334444555567665
No 65
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.47 E-value=3.2e-13 Score=132.71 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=97.4
Q ss_pred eEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhH----------H----h---------h-hccccc
Q 012680 71 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ----------L----V---------I-LGEQVG 125 (458)
Q Consensus 71 ~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~----------l----~---------~-~~~~~g 125 (458)
++|+++ ++||+||||+|++||.+|+++|++|++||+|++.+..... + . . .....+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCC
Confidence 456665 7899999999999999999999999999999964321100 0 0 0 001235
Q ss_pred cceecCCCccChH----HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hh--
Q 012680 126 VPVYTAGTEVKPS----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE-- 197 (458)
Q Consensus 126 v~v~~~~~~~~~~----~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~-- 197 (458)
+.+++.+...+.. ....+.++.+....||+|||||||.+... .... ....|.+++|+++... ..
T Consensus 83 ~~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~--~~~~------l~~ad~vivv~~p~~~sl~~~~ 154 (270)
T PRK10818 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--ALMA------LYFADEAIITTNPEVSSVRDSD 154 (270)
T ss_pred EEEecCCCCcchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHH--HHHH------HHhCCeEEEEcCCCchHHHhHH
Confidence 5555554322111 12345555554447999999999987521 1111 1224888989887422 22
Q ss_pred -HhHhhhhhe-----eeeee-ceeeeecccCCCCCc----ceeeeeeccCCceeEeecCCcc
Q 012680 198 -AAALVTTFN-----IEIGI-TGAILTKLDGDSRGG----AALSVKEVSGKPIKLVGRGERM 248 (458)
Q Consensus 198 -~~~~~~~~~-----~~~~i-~GvIlnk~D~~~~~g----~~~~i~~~~g~pI~fig~g~~v 248 (458)
..+.+..+. ...++ .++|+|+++...... ....+.+.+|.++ ++..+..
T Consensus 155 ~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~Ip~~ 214 (270)
T PRK10818 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKL--VGVIPED 214 (270)
T ss_pred HHHHHHHHhhccccccccccceEEEEeccCHhhhhhcccccHHHHHHHhCCcE--EEEecCC
Confidence 222222111 11122 478999998653211 2344555677775 4555443
No 66
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.46 E-value=3.5e-14 Score=142.79 Aligned_cols=169 Identities=21% Similarity=0.277 Sum_probs=100.1
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh--------------h-hcc----------
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV--------------I-LGE---------- 122 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~--------------~-~~~---------- 122 (458)
++.++|+++|+||+||||++.+||.+|+++|++|++||+|++++.....+. . ..+
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~~ 108 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFK 108 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEEE
Confidence 457899999999999999999999999999999999999998744211100 0 000
Q ss_pred ccccceecCCCcc---Ch----HHHHHhhHHHH---HhcCCcEEEEeCCcccc---ccHHHHHHHHHHHhhcCcceEEEE
Q 012680 123 QVGVPVYTAGTEV---KP----SQIAKQGLEEA---KKKNVDVVIVDTAGRLQ---IDKAMMDELKDVKRVLNPTEVLLV 189 (458)
Q Consensus 123 ~~gv~v~~~~~~~---~~----~~i~~~~l~~~---~~~~~DvVIIDtpg~l~---~d~~l~~el~~l~~~~~~~~vllV 189 (458)
..|+.+...+.+. .+ .....+.++.+ .| +||||||||+|... +....... + .+.+++|
T Consensus 109 ~~gv~~~~~g~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~~~-------~-ad~VIVV 179 (329)
T cd02033 109 RDGVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIARD-------M-AQKVIVV 179 (329)
T ss_pred eCCEEEecCCCCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhhhc-------C-CceEEEe
Confidence 1133333222211 11 11112344443 34 79999999988653 11111111 1 3566666
Q ss_pred Eeccc--hhh---Hh---HhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCcccc
Q 012680 190 VDAMT--GQE---AA---ALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 250 (458)
Q Consensus 190 vda~~--g~~---~~---~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v~d 250 (458)
..... -.. .. +.++.+....++.|+|+||.|+. +.+..+.+.++.|+ ++..|...+
T Consensus 180 t~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~---~~ie~~ae~lgi~v--Lg~IP~D~~ 243 (329)
T cd02033 180 GSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGT---GEAQAFAAHAGIPI--LAAIPADEE 243 (329)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCc---chHHHHHHHhCCCE--EEECCCCHH
Confidence 65421 111 11 22233333467799999999863 23556667788888 777765544
No 67
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.46 E-value=4.1e-13 Score=130.61 Aligned_cols=164 Identities=23% Similarity=0.318 Sum_probs=95.7
Q ss_pred eEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchh--------------hhHH---------h-hhccccc
Q 012680 71 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA--------------IDQL---------V-ILGEQVG 125 (458)
Q Consensus 71 ~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a--------------~~~l---------~-~~~~~~g 125 (458)
++|+++ ++||+||||+|.+||.+|++.|++|++||+|++.+.. .+.+ . ......+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 81 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKN 81 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCC
Confidence 466665 7899999999999999999999999999999963211 0100 0 0011235
Q ss_pred cceecCCCccC----hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhH-
Q 012680 126 VPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEA- 198 (458)
Q Consensus 126 v~v~~~~~~~~----~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~- 198 (458)
+.+++.+.... ....+.+.+..+. ..||+|||||||..... ....+ ...|.+++|+.+... ..+
T Consensus 82 l~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~~--~~~~l------~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 82 LYLLPASQTRDKDAVTPEQMKKLVNELK-EEFDYVIIDCPAGIESG--FRNAV------APADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred eEEEeCCCchhhhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCHH--HHHHH------HhCCeEEEEcCCCcHHHHHHH
Confidence 55555433211 1123455666654 57999999999987421 11111 224788888877322 222
Q ss_pred --hHhhhhheeeeeeceeeeecccCCCCC-c---ceeeeeeccCCceeEeecCCc
Q 012680 199 --AALVTTFNIEIGITGAILTKLDGDSRG-G---AALSVKEVSGKPIKLVGRGER 247 (458)
Q Consensus 199 --~~~~~~~~~~~~i~GvIlnk~D~~~~~-g---~~~~i~~~~g~pI~fig~g~~ 247 (458)
.+.+.... ....++|+|+++..... . .+..+.+.++.|+ ++..+.
T Consensus 153 ~~~~~l~~~~--~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ip~ 203 (261)
T TIGR01968 153 RVIGLLEAKG--IEKIHLIVNRLRPEMVKKGDMLSVDDVLEILSIPL--IGVIPE 203 (261)
T ss_pred HHHHHHHHcC--CCceEEEEeCcCchhcccccccCHHHHHHHhCCce--eEEccC
Confidence 22222222 23467999999864211 1 1223445567666 454443
No 68
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.46 E-value=1.8e-13 Score=136.52 Aligned_cols=170 Identities=19% Similarity=0.257 Sum_probs=94.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-----------hHHhhhc-------cccccce---e
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVILG-------EQVGVPV---Y 129 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-----------~~l~~~~-------~~~gv~v---~ 129 (458)
++|+|+||||+||||++.+||.+|+++|+||++||+|++.+... .++.... ....+.+ +
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~~ 80 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTTI 80 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeeccc
Confidence 46777799999999999999999999999999999999763221 1111000 0000000 0
Q ss_pred c-CC-----Ccc-Ch---------H-HHHHhhHHHHH--hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEE
Q 012680 130 T-AG-----TEV-KP---------S-QIAKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 190 (458)
Q Consensus 130 ~-~~-----~~~-~~---------~-~i~~~~l~~~~--~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVv 190 (458)
. .. ... .+ . ...+..++.+. ..+||+|||||++.+.... ....+.. ..++.+++|+
T Consensus 81 ~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g-~~~~~a~----~~Ad~viVvt 155 (296)
T TIGR02016 81 MNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGG-FATPLAR----SLAEEVIVIG 155 (296)
T ss_pred cCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCccccc-cccchhh----hhCCeEEEEe
Confidence 0 00 000 00 0 01134444432 1479999999987541100 0000100 1247888888
Q ss_pred ecc-ch----hhHhHhhhhhe---eeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCcccc
Q 012680 191 DAM-TG----QEAAALVTTFN---IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 250 (458)
Q Consensus 191 da~-~g----~~~~~~~~~~~---~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v~d 250 (458)
.+. .. .+....+..+. ..+++.|+|+|+.+.. +....+.+.++.|+ ++..|....
T Consensus 156 ~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~---~~~~~~~~~~~i~v--Lg~IP~d~~ 218 (296)
T TIGR02016 156 SNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS---GEAQAFAREVGIPV--LAAIPADEE 218 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc---cHHHHHHHHcCCCe--EEECCCCHH
Confidence 762 11 22333333232 2467899999999763 23355567788888 776654433
No 69
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.46 E-value=5.1e-13 Score=140.77 Aligned_cols=214 Identities=23% Similarity=0.310 Sum_probs=133.4
Q ss_pred EEEeec-cccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 72 VILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 72 iI~i~G-~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
.++|+| .+||||||+++.|+.+|+++|++|..+.+.+. .++... +....|.+....+......+.+++.+..+.
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd---~~d~~~-~~~~~g~~~~~ld~~~~~~~~v~~~~~~~~- 79 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD---YIDPAY-HTAATGRPSRNLDSWMMGEELVRALFARAA- 79 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCC---cccHHH-HHHHhCCCcccCCceeCCHHHHHHHHHHhc-
Confidence 466665 49999999999999999999999998887532 333221 222334444443333333455566666643
Q ss_pred cCCcEEEEeCCccccccHH---HHHHHHHHHhhcCcceEEEEEeccc-hhhHhHhh---hhheeeeeeceeeeecccCCC
Q 012680 151 KNVDVVIVDTAGRLQIDKA---MMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALV---TTFNIEIGITGAILTKLDGDS 223 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~---l~~el~~l~~~~~~~~vllVvda~~-g~~~~~~~---~~~~~~~~i~GvIlnk~D~~~ 223 (458)
.++|++||+++|.+..... ......++...+. .++++|+|+.. +......+ ..+...+.+.|+|+|++....
T Consensus 80 ~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~-~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~v~~~~ 158 (451)
T PRK01077 80 QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLG-APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNRVGSER 158 (451)
T ss_pred ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEECCCChh
Confidence 5799999999977642100 0012234455554 78999999853 32332333 335557889999999997654
Q ss_pred CCcceeeeeeccCCceeEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHH
Q 012680 224 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFL 303 (458)
Q Consensus 224 ~~g~~~~i~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~ 303 (458)
+........+.++.|+ +|..|..+++.. | +||||+....+.- ..++..+.....++..++++.++
T Consensus 159 ~~~~l~~~l~~~gipv--LG~IP~~~~l~~--p----~r~lgl~~~~e~~-------~~~~~~~~~~~~~~~~~~~~~~~ 223 (451)
T PRK01077 159 HYQLLREALERCGIPV--LGALPRDAALAL--P----ERHLGLVQASEHG-------DLEARLDALADLVEEHVDLDALL 223 (451)
T ss_pred HHHHHHHHHHhcCCCE--EEEeeCCcccCC--C----ccccCCCCccccc-------cHHHHHHHHHHHHHHcCCHHHHH
Confidence 3333333344478888 899988877654 5 8899987443321 11223344555567788888766
Q ss_pred HHH
Q 012680 304 KQT 306 (458)
Q Consensus 304 ~~l 306 (458)
+..
T Consensus 224 ~~~ 226 (451)
T PRK01077 224 ALA 226 (451)
T ss_pred HHH
Confidence 543
No 70
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.45 E-value=2.7e-13 Score=140.05 Aligned_cols=115 Identities=28% Similarity=0.368 Sum_probs=73.3
Q ss_pred CCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeec-cccCchhhh-------------HHh--hh-----------
Q 012680 69 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAID-------------QLV--IL----------- 120 (458)
Q Consensus 69 ~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~-D~~rp~a~~-------------~l~--~~----------- 120 (458)
++++|.++ .+|||||||+|.+||.+|+.+|+||++||+ |++...... .+. ..
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 184 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYAIK 184 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcCccccccccccHHHHHhcCCCchhhhee
Confidence 46777776 889999999999999999999999999996 997643210 000 00
Q ss_pred -ccccccceecCCCcc------------------ChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhc
Q 012680 121 -GEQVGVPVYTAGTEV------------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 181 (458)
Q Consensus 121 -~~~~gv~v~~~~~~~------------------~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~ 181 (458)
....|+++++++... .+...+++.++.+. ..||+|||||||.+.. ..... +.
T Consensus 185 ~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~--~t~na------l~ 255 (388)
T PRK13705 185 PTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGI--GTINV------VC 255 (388)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhH--HHHHH------HH
Confidence 011355555543211 12234455565553 6799999999998752 11111 12
Q ss_pred CcceEEEEEec
Q 012680 182 NPTEVLLVVDA 192 (458)
Q Consensus 182 ~~~~vllVvda 192 (458)
.+|.+++++.+
T Consensus 256 AaD~viiP~~~ 266 (388)
T PRK13705 256 AADVLIVPTPA 266 (388)
T ss_pred HcCEEEEecCC
Confidence 24777777765
No 71
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.44 E-value=4.9e-13 Score=138.37 Aligned_cols=43 Identities=33% Similarity=0.360 Sum_probs=38.4
Q ss_pred CCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 69 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 69 ~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
++++|+++ .+||+||||+|.+||.+|+..|++|++||+|++..
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 45677776 88999999999999999999999999999999764
No 72
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.42 E-value=1.2e-12 Score=124.85 Aligned_cols=145 Identities=22% Similarity=0.233 Sum_probs=85.3
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc-------hhhhHHh-------------hhccc--------
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-------AAIDQLV-------------ILGEQ-------- 123 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp-------~a~~~l~-------------~~~~~-------- 123 (458)
+++++|+||+||||++++||.++++.|++|+++|+|+.++ +..+.+. .....
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 4678899999999999999999999999999999999883 2211110 00000
Q ss_pred -cccceecC-CCccChHHHH--HhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcC--cceEEEEEecc-ch-
Q 012680 124 -VGVPVYTA-GTEVKPSQIA--KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN--PTEVLLVVDAM-TG- 195 (458)
Q Consensus 124 -~gv~v~~~-~~~~~~~~i~--~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~--~~~vllVvda~-~g- 195 (458)
.+..+... ....++.+.+ .+.++.+...+||+|||||||.......+ ....... .+.+++|+.+. +.
T Consensus 81 ~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l-----~~~~l~~~~~~~vllV~~p~~~s~ 155 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLL-----VRELLTDPERTSFRLVTLPEKLPL 155 (217)
T ss_pred chhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHH-----HHHHccCCCceEEEEEeCCCccHH
Confidence 01111111 1233444433 34444444334999999999974321111 1111122 26788888773 22
Q ss_pred hhHhHhhhhhe-eeeeeceeeeecccC
Q 012680 196 QEAAALVTTFN-IEIGITGAILTKLDG 221 (458)
Q Consensus 196 ~~~~~~~~~~~-~~~~i~GvIlnk~D~ 221 (458)
.++......+. .+.++.|+|+|++..
T Consensus 156 ~~~~~~l~~l~~~~~~~~glVlN~~~~ 182 (217)
T cd02035 156 YETERAITELALYGIPVDAVVVNRVLP 182 (217)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 33333333332 245678999999864
No 73
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.41 E-value=1.5e-12 Score=127.08 Aligned_cols=40 Identities=45% Similarity=0.574 Sum_probs=37.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++++++|+||+||||++++||.++++.|++|++||+|+.+
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 4789999999999999999999999999999999999964
No 74
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.41 E-value=1.5e-12 Score=135.45 Aligned_cols=204 Identities=22% Similarity=0.255 Sum_probs=134.7
Q ss_pred EEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 73 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 73 I~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
++++|. +|+||||+++.|+.+|.++|.+|....+ .|+++|.. .+....|.++.+.+++....+.++..+.. .
T Consensus 4 ~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~---Gpd~iD~~-~~~~~~g~~~~nld~~~~~~~~i~~~~~~---~ 76 (433)
T PRK13896 4 FVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA---GPDFIDPS-HHEAVAGRPSRTLDPWLSGEDGMRRNYYR---G 76 (433)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee---CCCCCCHH-HHHHHhCCCcccCChhhCCHHHHHHHHHh---h
Confidence 566665 9999999999999999999999986654 34455543 24445566666655555555555444332 3
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhh---hhhee----eeeeceeeeecccCCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALV---TTFNI----EIGITGAILTKLDGDS 223 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~---~~~~~----~~~i~GvIlnk~D~~~ 223 (458)
.+|++||++.+.+. |.. .....++...+. .+++||+|+..+ .+....+ ..|.. ++.+.|||+|++.+.+
T Consensus 77 ~~d~~vIEG~gGl~-dg~-~~s~adla~~l~-~PviLVv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~ 153 (433)
T PRK13896 77 EGDICVVEGVMGLY-DGD-VSSTAMVAEALD-LPVVLVVDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGGR 153 (433)
T ss_pred cCCEEEEECCCccc-cCC-CCCHHHHHHHHC-CCEEEEEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcHH
Confidence 48999999998875 322 123445555555 689999999655 2333323 34444 6889999999998866
Q ss_pred CCcceeeeeeccCCceeEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHH
Q 012680 224 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFL 303 (458)
Q Consensus 224 ~~g~~~~i~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~ 303 (458)
+...+.+..+. ++|+ +|..|+.+++.. | +||||+....+. +..+ +...+ .+..+|+|.++
T Consensus 154 h~~~l~~~~~~-~i~v--lG~lP~~~~~~~--~----~RHLGLv~~~e~-~~~~---------~~~~~-~~~~~d~~~l~ 213 (433)
T PRK13896 154 HADGIRDALPD-ELTY--FGRIPPRDDLEI--P----DRHLGLHMGSEA-PLDD---------DALDE-AAEHIDAERLA 213 (433)
T ss_pred HHHHHHHhhhh-cCce--eEecccCCCCCC--C----CCCcCCCcchhh-ccHH---------HHHHH-HHHhCCHHHHH
Confidence 65544443333 6777 999999988766 6 999999733221 1111 11122 55678999887
Q ss_pred HHH
Q 012680 304 KQT 306 (458)
Q Consensus 304 ~~l 306 (458)
+..
T Consensus 214 ~~a 216 (433)
T PRK13896 214 AVA 216 (433)
T ss_pred HHh
Confidence 765
No 75
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.40 E-value=3e-12 Score=129.20 Aligned_cols=160 Identities=24% Similarity=0.276 Sum_probs=93.5
Q ss_pred CCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-----h--------HHhh-------------hc
Q 012680 69 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----D--------QLVI-------------LG 121 (458)
Q Consensus 69 ~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-----~--------~l~~-------------~~ 121 (458)
..++|.++ ++||+||||++.+||.+|+++|++|++||+|++.+... + .+.. ..
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALP 171 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCC
Confidence 45677777 68999999999999999999999999999999865321 0 0100 01
Q ss_pred cccccceecCCCcc---ChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc--hh
Q 012680 122 EQVGVPVYTAGTEV---KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ 196 (458)
Q Consensus 122 ~~~gv~v~~~~~~~---~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~--g~ 196 (458)
...|+.+++.+... -....++..++.+. ..||+||||||+..... ... +. ...|.+++|+++.. -.
T Consensus 172 ~~~~l~vl~~~~~~~~~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~--~~~----~L--~~AD~vliV~~~~~~sl~ 242 (322)
T TIGR03815 172 RRGGLSVLSWGRAVGAALPPAAVRAVLDAAR-RGGDLVVVDLPRRLTPA--AET----AL--ESADLVLVVVPADVRAVA 242 (322)
T ss_pred CcCCeEEEecCCCCcCCCCHHHHHHHHHHHH-hcCCEEEEeCCCCCCHH--HHH----HH--HHCCEEEEEcCCcHHHHH
Confidence 11345555443321 12234566666654 68999999999987521 111 11 12488888887632 12
Q ss_pred hHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 197 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 197 ~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
.+.+....+...-.-..+|+|+... .......+.+.+|.|+
T Consensus 243 ~a~r~l~~l~~~~~~~~lVv~~~~~--~~~~~~~i~~~lg~~v 283 (322)
T TIGR03815 243 AAARVCPELGRRNPDLRLVVRGPAP--AGLDPEEIAESLGLPL 283 (322)
T ss_pred HHHHHHHHHhhhCCCeEEEEeCCCC--CCCCHHHHHHHhCCCc
Confidence 3333333222211112456776432 1122345666678777
No 76
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.40 E-value=1.6e-12 Score=136.89 Aligned_cols=210 Identities=22% Similarity=0.351 Sum_probs=130.0
Q ss_pred EEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 73 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 73 I~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
++|+|. +||||||+++.|+.+|+++|++|....+ .|+.+|... +....|.+....+.+....+.+++.+..+. .
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~---g~d~~D~~~-~~~~~g~~~~~ld~~~~~~~~i~~~~~~~~-~ 76 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV---GPDYIDPMF-HTQATGRPSRNLDSFFMSEAQIQECFHRHS-K 76 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc---CCCCCCHHH-HHHHhCCchhhCCcccCCHHHHHHHHHHhc-c
Confidence 466666 9999999999999999999999996654 133333221 222233333222222233455566666543 5
Q ss_pred CCcEEEEeCCccccc------cHHHHHHHHHHHhhcCcceEEEEEeccc-hhhHhHhh---hhheeeeeeceeeeecccC
Q 012680 152 NVDVVIVDTAGRLQI------DKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALV---TTFNIEIGITGAILTKLDG 221 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~------d~~l~~el~~l~~~~~~~~vllVvda~~-g~~~~~~~---~~~~~~~~i~GvIlnk~D~ 221 (458)
++|++||+++|.+.. +... ..++.+.+. .++++|+++.+ ........ ..+...+.+.|+|+|+++.
T Consensus 77 ~~D~viVEGagGl~~g~~p~~~~~s---~adlAk~l~-~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~v~~ 152 (449)
T TIGR00379 77 GTDYSIIEGVRGLYDGISAITDYGS---TASVAKALD-APIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNRVGS 152 (449)
T ss_pred cCCEEEEecCCccccCCCCCCCCcc---HHHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEECCCC
Confidence 799999999976641 1112 234444454 78999999854 33333332 2345678899999999986
Q ss_pred CCCCcce-eeeeeccCCceeEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChh
Q 012680 222 DSRGGAA-LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 300 (458)
Q Consensus 222 ~~~~g~~-~~i~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~e 300 (458)
+.+.... ..+...++.|+ +|..|..+++.. | +||||+....+. +.. ++.........+..+|++
T Consensus 153 ~~~~~~~~~~i~~~~gipv--LG~IP~~~~l~~--p----~rhLgLv~~~e~-~~~------~~~~~~~~~~~~~~~d~~ 217 (449)
T TIGR00379 153 ERHLEKLKIAVEPLRGIPI--LGVIPRQQDLKV--P----DRHLGLVPAGER-EII------QQIFDWLAEVVEKYLDLD 217 (449)
T ss_pred HHHHHHHHHHHHHhCCCCE--EEEecCccccCC--C----CcccCCCChhhh-hhH------HHHHHHHHHHHHhhCCHH
Confidence 5433222 22334468888 899988877654 5 899998744432 111 112223344566789998
Q ss_pred HHHHHH
Q 012680 301 DFLKQT 306 (458)
Q Consensus 301 dl~~~l 306 (458)
.+++..
T Consensus 218 ~l~~~a 223 (449)
T TIGR00379 218 KLLEIA 223 (449)
T ss_pred HHHHHh
Confidence 887755
No 77
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.39 E-value=1.8e-12 Score=126.59 Aligned_cols=42 Identities=36% Similarity=0.441 Sum_probs=36.3
Q ss_pred CeEEEee-ccccccchhHhhHHHHHHH-hcCCceEEeeccccCc
Q 012680 70 PTVILLA-GLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRP 111 (458)
Q Consensus 70 p~iI~i~-G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~~rp 111 (458)
+.+|.++ -+||+||||+|.+||.+|+ ..|+||++||+|++..
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch
Confidence 4566666 7899999999999999999 5669999999999854
No 78
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.39 E-value=5.3e-13 Score=128.06 Aligned_cols=143 Identities=23% Similarity=0.280 Sum_probs=88.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchh---h----hHHhhhccccccceecCCCccChHH--
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---I----DQLVILGEQVGVPVYTAGTEVKPSQ-- 139 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a---~----~~l~~~~~~~gv~v~~~~~~~~~~~-- 139 (458)
+..+|-++|+||+||||++..|+..|.++|++|.++..||..|-. + -.+..+....|+.+.+..+......
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 467999999999999999999999999999999999999977632 1 1233455566777776654333332
Q ss_pred -HHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeec
Q 012680 140 -IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK 218 (458)
Q Consensus 140 -i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk 218 (458)
...+++.-+...+||+|||+|.|..+.+.+.. .. +|-+++|+.+..|.+.-..-....+-. .-+|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~-------~~--aD~~v~v~~Pg~GD~iQ~~KaGimEia--Di~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDIA-------DM--ADTVVLVLVPGLGDEIQAIKAGIMEIA--DIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHH-------TT--SSEEEEEEESSTCCCCCTB-TTHHHH---SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHH-------Hh--cCeEEEEecCCCccHHHHHhhhhhhhc--cEEEEeC
Confidence 34566666667799999999999877433222 11 377788887766644322111111111 3489999
Q ss_pred ccCC
Q 012680 219 LDGD 222 (458)
Q Consensus 219 ~D~~ 222 (458)
.|..
T Consensus 177 aD~~ 180 (266)
T PF03308_consen 177 ADRP 180 (266)
T ss_dssp -SHH
T ss_pred CChH
Confidence 9943
No 79
>PRK10037 cell division protein; Provisional
Probab=99.38 E-value=1.9e-12 Score=126.00 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=71.1
Q ss_pred EEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh----h---------HHh--------hhcccccccee
Q 012680 72 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI----D---------QLV--------ILGEQVGVPVY 129 (458)
Q Consensus 72 iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~----~---------~l~--------~~~~~~gv~v~ 129 (458)
+|.++ .+||+||||+|.+||.+|+++|+||++||+|++..... + .+. ......|++++
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii 82 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDLL 82 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEEE
Confidence 45555 88999999999999999999999999999999863210 0 000 00111356666
Q ss_pred cCCCccChH------------HHHHhhHHHHHh-cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc
Q 012680 130 TAGTEVKPS------------QIAKQGLEEAKK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 193 (458)
Q Consensus 130 ~~~~~~~~~------------~i~~~~l~~~~~-~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~ 193 (458)
+.+. .... ..+.+.+..+.. ..||+|||||||..... .... ...+|.+++++.+.
T Consensus 83 p~~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~--~~~a------l~aaD~vlvpv~~~ 150 (250)
T PRK10037 83 PFGQ-LSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPL--TRQL------LSLCDHSLAIVNVD 150 (250)
T ss_pred cCCC-CCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHH--HHHH------HHhCCEEEEEcCcC
Confidence 6532 1111 113445555431 57999999999987421 1111 12258888888774
No 80
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.37 E-value=4.2e-12 Score=113.92 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=79.9
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHH-------hhhccccccceecCCC---ccChHHHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VILGEQVGVPVYTAGT---EVKPSQIAK 142 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l-------~~~~~~~gv~v~~~~~---~~~~~~i~~ 142 (458)
+.++|++|+||||++.+|+.++.+.|++|+++++|+..+.....+ .......++.+..... ...+.....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHH
Confidence 678899999999999999999999999999999998664332111 1111112322222211 111223344
Q ss_pred hhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhh-heeeeeeceeeeeccc
Q 012680 143 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT-FNIEIGITGAILTKLD 220 (458)
Q Consensus 143 ~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~-~~~~~~i~GvIlnk~D 220 (458)
+.++.+...+||+|||||||...... .+. ..+|.+++|+.+..+. +....+. .-+.. .-+++||+|
T Consensus 82 ~~~~~~~~~~~D~iiIDtaG~~~~~~-------~~~--~~Ad~~ivv~tpe~~D-~y~~~k~~~~~~~--~~~~~~k~~ 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGVGQSEV-------DIA--SMADTTVVVMAPGAGD-DIQAIKAGIMEIA--DIVVVNKAD 148 (148)
T ss_pred HHHHHHHhcCCCEEEEECCccChhhh-------hHH--HhCCEEEEEECCCchh-HHHHhhhhHhhhc--CEEEEeCCC
Confidence 55555554689999999988653111 111 1247778887765332 2222221 11122 338999987
No 81
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.36 E-value=7.1e-12 Score=125.33 Aligned_cols=145 Identities=20% Similarity=0.222 Sum_probs=90.9
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhH-------HhhhccccccceecCCCc---cCh
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-------LVILGEQVGVPVYTAGTE---VKP 137 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~-------l~~~~~~~gv~v~~~~~~---~~~ 137 (458)
.++.+|.++|++|+||||++.+|+.++.++|++|.++++|++.+..... +.......++.+...+.. ...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 3578999999999999999999999999999999999999987642111 111222234443333221 112
Q ss_pred HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeee
Q 012680 138 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 217 (458)
Q Consensus 138 ~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIln 217 (458)
.....+.+..+...+||+|||||+|..+..... .. ..|.++++..+..+.+.......+.... .-+|+|
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i-------~~--~aD~i~vv~~~~~~~el~~~~~~l~~~~--~ivv~N 180 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSEVDI-------AN--MADTFVVVTIPGTGDDLQGIKAGLMEIA--DIYVVN 180 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHH-------HH--hhceEEEEecCCccHHHHHHHHHHhhhc--cEEEEE
Confidence 223455666666678999999999976432221 11 1255666655555554433333232111 248999
Q ss_pred cccCCC
Q 012680 218 KLDGDS 223 (458)
Q Consensus 218 k~D~~~ 223 (458)
|+|...
T Consensus 181 K~Dl~~ 186 (300)
T TIGR00750 181 KADGEG 186 (300)
T ss_pred cccccc
Confidence 999753
No 82
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.36 E-value=4.3e-12 Score=123.35 Aligned_cols=144 Identities=20% Similarity=0.263 Sum_probs=100.1
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchh-------hhHHhhhccccccceecCCCccCh---
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------IDQLVILGEQVGVPVYTAGTEVKP--- 137 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a-------~~~l~~~~~~~gv~v~~~~~~~~~--- 137 (458)
+++.+|-++|.||+||||++.+|...|..+|++|.++..||..|-. .-.+..+....|+.+.+..+....
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 4678999999999999999999999999999999999999977642 112334555667877776543322
Q ss_pred HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeee
Q 012680 138 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 217 (458)
Q Consensus 138 ~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIln 217 (458)
....++++..+...+||+|||+|.|..+.+.+.... .|.+++|.-+..|.+.-..-....+-. .-+|+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~---------aDt~~~v~~pg~GD~~Q~iK~GimEia--Di~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANM---------ADTFLVVMIPGAGDDLQGIKAGIMEIA--DIIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhh---------cceEEEEecCCCCcHHHHHHhhhhhhh--heeeEe
Confidence 234466777777789999999999998765543332 366666666666654332222222111 238999
Q ss_pred cccCC
Q 012680 218 KLDGD 222 (458)
Q Consensus 218 k~D~~ 222 (458)
|.|..
T Consensus 198 KaD~~ 202 (323)
T COG1703 198 KADRK 202 (323)
T ss_pred ccChh
Confidence 99943
No 83
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.35 E-value=5.7e-12 Score=123.08 Aligned_cols=143 Identities=22% Similarity=0.360 Sum_probs=87.5
Q ss_pred eEEEee-ccccccchhHhhHHH-HHHHhcCCceEEeeccccCchh------------h----------hHHhhhcccccc
Q 012680 71 TVILLA-GLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDVYRPAA------------I----------DQLVILGEQVGV 126 (458)
Q Consensus 71 ~iI~i~-G~~GsGKTT~a~~LA-~~L~~~G~kVllVd~D~~rp~a------------~----------~~l~~~~~~~gv 126 (458)
++|.++ |+||+||||+++||+ ..++.+|++|+++|+|+..+.. + ++........|+
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~gl 82 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDGL 82 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCCE
Confidence 455555 999999999999995 4555667888999999854321 1 111222222577
Q ss_pred ceecCCCccChH-----HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEec--cchhhHh
Q 012680 127 PVYTAGTEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQEAA 199 (458)
Q Consensus 127 ~v~~~~~~~~~~-----~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda--~~g~~~~ 199 (458)
.+++.+...... +.....+..+. ..||+||||||+.+..+. +...+..+.+++|+.+ ..-.++.
T Consensus 83 ~vipg~~~~~~~~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~--------~~~~~~sd~~viVt~pe~~si~~A~ 153 (262)
T COG0455 83 YVLPGGSGLEDLAKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDT--------LSFILSSDELVIVTTPEPTSITDAY 153 (262)
T ss_pred EEeeCCCChHHHhhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHH--------HHHHHhcCcEEEEeCCCcchHHHHH
Confidence 777765432221 12234444443 567999999999986432 1122234788888866 2334454
Q ss_pred Hhhh-hheeeeeece--eeeecccCC
Q 012680 200 ALVT-TFNIEIGITG--AILTKLDGD 222 (458)
Q Consensus 200 ~~~~-~~~~~~~i~G--vIlnk~D~~ 222 (458)
...+ .........+ +|+|++++.
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~ 179 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRST 179 (262)
T ss_pred HHHHHHHHcCCccccceEEEEecccc
Confidence 4443 3344555566 999999844
No 84
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.32 E-value=1.9e-11 Score=117.62 Aligned_cols=143 Identities=23% Similarity=0.186 Sum_probs=86.1
Q ss_pred eEEEeec-cccccchhHhhHHHHHHHhcCCceEEeeccccCc-------------hhh--------hHHhhhccccccce
Q 012680 71 TVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-------------AAI--------DQLVILGEQVGVPV 128 (458)
Q Consensus 71 ~iI~i~G-~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp-------------~a~--------~~l~~~~~~~gv~v 128 (458)
++|+++| +||+||||++++||..|++.|++|++||+||+.. +.. .+-..+....|+.+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~ 81 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF 81 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Confidence 3666665 5999999999999999999999999999998421 000 01111223457777
Q ss_pred ecCCCccCh-----------HHHHHhhHHHHH-hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh
Q 012680 129 YTAGTEVKP-----------SQIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ 196 (458)
Q Consensus 129 ~~~~~~~~~-----------~~i~~~~l~~~~-~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~ 196 (458)
++-+.-... ...+.+.+..+. ...||+||||||+..... .. .+.. .+|-++.|+.+....
T Consensus 82 LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~---~~---~al~--~aD~vL~V~~~Da~s 153 (243)
T PF06564_consen 82 LPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPY---TR---QALA--AADLVLVVVNPDAAS 153 (243)
T ss_pred EcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHH---HH---HHHH--hCCeEEEEeCCCHHH
Confidence 775532111 112345555555 467999999999976421 11 1111 137778888664332
Q ss_pred hHhHhhh-hheeeeeeceeeeecccCCCCC
Q 012680 197 EAAALVT-TFNIEIGITGAILTKLDGDSRG 225 (458)
Q Consensus 197 ~~~~~~~-~~~~~~~i~GvIlnk~D~~~~~ 225 (458)
. ....+ .+.. -..+++|++|..+.-
T Consensus 154 ~-~~L~q~~l~~---~~~~liNq~~~~s~l 179 (243)
T PF06564_consen 154 H-ARLHQRALPA---GHRFLINQYDPASQL 179 (243)
T ss_pred H-HHHHHhcccC---CcEEEEeccCccchH
Confidence 1 11111 1211 246899999976543
No 85
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.32 E-value=1.1e-11 Score=117.57 Aligned_cols=90 Identities=28% Similarity=0.378 Sum_probs=65.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcccc-----ccceecCCCccChHHHHHhh
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV-----GVPVYTAGTEVKPSQIAKQG 144 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~-----gv~v~~~~~~~~~~~i~~~~ 144 (458)
|.|.+.+.|||+||||++..||..|+++|.+|.+||+||.+|-..+ ...+... ++.++.. +....+..+
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W--~~~a~~~~~~~~~~~V~~~----~e~~~l~~~ 75 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW--AENAQRPGAWPDRIEVYEA----DELTILEDA 75 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH--HHhccccCCCCCCeeEEec----cchhhHHHH
Confidence 4455666999999999999999999999999999999999997633 2222222 2333332 223355666
Q ss_pred HHHHHhcCCcEEEEeCCcccc
Q 012680 145 LEEAKKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 145 l~~~~~~~~DvVIIDtpg~l~ 165 (458)
++.+....||+|||||.|.-.
T Consensus 76 ~e~a~~~~~d~VlvDleG~as 96 (231)
T PF07015_consen 76 YEAAEASGFDFVLVDLEGGAS 96 (231)
T ss_pred HHHHHhcCCCEEEEeCCCCCc
Confidence 666655679999999999764
No 86
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.32 E-value=1.9e-11 Score=123.11 Aligned_cols=147 Identities=21% Similarity=0.246 Sum_probs=96.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCch---hh--h--HHhhhccccccceecCCC--cc-Ch
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA---AI--D--QLVILGEQVGVPVYTAGT--EV-KP 137 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~---a~--~--~l~~~~~~~gv~v~~~~~--~~-~~ 137 (458)
+++.+|.++|.+|+||||++..|+.++..+|++|.+++.|+..+. ++ | .+..+....++.+...+. .. ..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 367899999999999999999999999999999999999997652 11 1 122233333444444322 11 23
Q ss_pred HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeee
Q 012680 138 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 217 (458)
Q Consensus 138 ~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIln 217 (458)
...+.+++..+...+||+|||||+|..+.... .. . .+|-+++|+++..+.+.........+-. .-+|+|
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~-i~------~--~aD~vlvv~~p~~gd~iq~~k~gi~E~a--DIiVVN 202 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETA-VA------G--MVDFFLLLQLPGAGDELQGIKKGIMELA--DLIVIN 202 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhH-HH------H--hCCEEEEEecCCchHHHHHHHhhhhhhh--heEEee
Confidence 45667777777778999999999998753222 11 1 1477777877655544433222111111 238999
Q ss_pred cccCCCCC
Q 012680 218 KLDGDSRG 225 (458)
Q Consensus 218 k~D~~~~~ 225 (458)
|+|.....
T Consensus 203 KaDl~~~~ 210 (332)
T PRK09435 203 KADGDNKT 210 (332)
T ss_pred hhcccchh
Confidence 99976443
No 87
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.30 E-value=1.5e-11 Score=129.37 Aligned_cols=225 Identities=16% Similarity=0.151 Sum_probs=130.0
Q ss_pred HHhHHHHHHhhccceeeeEeccCCCeEEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhh-hc--
Q 012680 46 KIVRDELVKLMGGEVSELVFAKSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI-LG-- 121 (458)
Q Consensus 46 ~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~-~~-- 121 (458)
+.+++.+.+-.|-..........+|+.++++|. +|+||||+++.|+.+|+++ |....+ .|++++.... +.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~---GpD~id~~p~~~~~~ 287 (476)
T PRK06278 214 KILKEKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKI---GPDVRDIVPSLYLLR 287 (476)
T ss_pred HHHHHHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcC---CCChhhcCCcceecc
Confidence 466666666666433222222334666888877 9999999999999999976 665543 2344431100 11
Q ss_pred -cccccceec--CCCccChHHHHHhhHHHHHhcCCcEEEEeCCcccccc---HHHHHHHHHHHhhcCcceEEEEEeccch
Q 012680 122 -EQVGVPVYT--AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMTG 195 (458)
Q Consensus 122 -~~~gv~v~~--~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d---~~l~~el~~l~~~~~~~~vllVvda~~g 195 (458)
...+.++.. ...+.+..+.+. .+...++|++||++++.+... .....+..++...+. .++++|+|+..+
T Consensus 288 ~~~sp~~a~n~~~d~~~~~~~~~~----~~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~g 362 (476)
T PRK06278 288 EKMTKYNSIKIGDRGWSDVEEFLE----FVKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSKS 362 (476)
T ss_pred cccCChHHHhhcCCcccCHHHHHH----HHHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCCC
Confidence 111222222 122233333332 232246899999999876531 100123345556565 789999999443
Q ss_pred --hhHhHhh---hhh--eeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCccccCCCCCcchhhhhhhcccc
Q 012680 196 --QEAAALV---TTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 268 (458)
Q Consensus 196 --~~~~~~~---~~~--~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~d 268 (458)
.+++..+ ..| ..++.+.|||+|++.+..+...+..+.+.+|+|| +|+ ++ +.. | + +|+..
T Consensus 363 ~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpV--LG~-~~---~~~--~----~--lGLv~ 428 (476)
T PRK06278 363 GIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINL--IGV-GK---LKV--E----K--RGLIP 428 (476)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCE--EEe-cc---ccc--c----c--cCCCC
Confidence 3443332 345 4578899999999997776666666777799999 888 55 221 3 2 45542
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHH
Q 012680 269 VLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLK 304 (458)
Q Consensus 269 v~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~ 304 (458)
.. |. +.++....... .+..+|++.+++
T Consensus 429 ~~-------e~-~~~~~~~~~~~-~~~~~d~~~i~~ 455 (476)
T PRK06278 429 EV-------EI-DYEEFCKAAME-VDENIDIPKIEI 455 (476)
T ss_pred hh-------hh-hHHHHHHHHHH-HHhcCCHHHHHH
Confidence 21 11 12222233344 677788888754
No 88
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.30 E-value=3.6e-12 Score=113.05 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=71.5
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 152 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~ 152 (458)
.+.+++||+||||++.+||.+++.+|++|+++|+|++.+..-
T Consensus 3 ~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~-------------------------------------- 44 (139)
T cd02038 3 AVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD-------------------------------------- 44 (139)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC--------------------------------------
Confidence 445589999999999999999999999999999997654321
Q ss_pred CcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhhee--eeeeceeeeecccCC
Q 012680 153 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI--EIGITGAILTKLDGD 222 (458)
Q Consensus 153 ~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~--~~~i~GvIlnk~D~~ 222 (458)
||+||||||+....+. .. +.. ..|.+++|+++... .+....+..+.. .....++|+|+++..
T Consensus 45 yd~VIiD~p~~~~~~~--~~----~l~--~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGISDNV--LD----FFL--AADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCCHHH--HH----HHH--hCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 8999999999764221 11 111 24788888887422 232333322211 223356999999754
No 89
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.27 E-value=9.8e-12 Score=119.63 Aligned_cols=173 Identities=23% Similarity=0.263 Sum_probs=101.7
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCch------------hhhHHhhhcc-------------ccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA------------AIDQLVILGE-------------QVG 125 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~------------a~~~l~~~~~-------------~~g 125 (458)
+-|++.|+||.||||++.||+.+|++.|+||++|.|||.... ..+.+..... ..|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~g 80 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFKG 80 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGGG
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccCC
Confidence 468999999999999999999999999999999999995422 2222222221 235
Q ss_pred cceecCCCccCh----HH---HHHhhHHHHH--hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEec--cc
Q 012680 126 VPVYTAGTEVKP----SQ---IAKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MT 194 (458)
Q Consensus 126 v~v~~~~~~~~~----~~---i~~~~l~~~~--~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda--~~ 194 (458)
+.++.++.+.-. .. ...+.+++.. ..++|+|+.|..|..-- ..+.--+ +.-.++++++|.+. ++
T Consensus 81 i~CvEsGGPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVC-GGFamPi----r~g~a~evyIVtSge~ms 155 (273)
T PF00142_consen 81 ILCVESGGPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVC-GGFAMPI----REGYAQEVYIVTSGEFMS 155 (273)
T ss_dssp EEEEE---SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSC-TTTTHHH----HTTS-SEEEEEEBSSHHH
T ss_pred ceeeccCCCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEE-eeeehhh----hhccCCEEEEEecCcHHH
Confidence 666665543221 11 2233344332 24589999998765421 1111111 11124788888766 33
Q ss_pred hhhHhHhh---hhhee--eeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCcccc
Q 012680 195 GQEAAALV---TTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 250 (458)
Q Consensus 195 g~~~~~~~---~~~~~--~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v~d 250 (458)
-..+.++. ..|.. ..++.|+|+|.-+.+.....+....+.+|.|| ++..|+.+.
T Consensus 156 lyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i--~~~iPr~~~ 214 (273)
T PF00142_consen 156 LYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPI--IAFIPRSEI 214 (273)
T ss_dssp HHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEE--EEEE---HH
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcE--EEecCchHH
Confidence 33333333 45543 46789999998766666667778888999999 666665543
No 90
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.27 E-value=2.3e-11 Score=102.90 Aligned_cols=72 Identities=31% Similarity=0.362 Sum_probs=56.5
Q ss_pred EEeeccccccchhHhhHHHHHHHhc-CCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
.++.++||+||||++.+||..+++. |++|+++|+|++++.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~--------------------------------------- 43 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD--------------------------------------- 43 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC---------------------------------------
Confidence 4456889999999999999999998 999999999988653
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 193 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~ 193 (458)
|+|||||||...... . .+. ...|.+++|+++.
T Consensus 44 --D~IIiDtpp~~~~~~--~----~~l--~~aD~vlvvv~~~ 75 (106)
T cd03111 44 --DYVVVDLGRSLDEVS--L----AAL--DQADRVFLVTQQD 75 (106)
T ss_pred --CEEEEeCCCCcCHHH--H----HHH--HHcCeEEEEecCC
Confidence 899999999875321 1 111 1248888888773
No 91
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.26 E-value=2.7e-11 Score=101.56 Aligned_cols=94 Identities=28% Similarity=0.345 Sum_probs=65.0
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 152 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~ 152 (458)
.+...+||+||||++.+||.+++++|.+|+++|+|++
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~------------------------------------------- 39 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ------------------------------------------- 39 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-------------------------------------------
Confidence 3444689999999999999999999999999999976
Q ss_pred CcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhh------hhheeeeeeceeeee
Q 012680 153 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALV------TTFNIEIGITGAILT 217 (458)
Q Consensus 153 ~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~------~~~~~~~~i~GvIln 217 (458)
||+|||||||...... . .+.. ..|.+++++++... +...+.. ..+.....+.|+|+|
T Consensus 40 ~d~viiD~p~~~~~~~--~----~~l~--~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~vv~n 104 (104)
T cd02042 40 YDYIIIDTPPSLGLLT--R----NALA--AADLVLIPVQPSPLDLDGLEKLLETLILEDRLNPDLDILGILPT 104 (104)
T ss_pred CCEEEEeCcCCCCHHH--H----HHHH--HCCEEEEeccCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 8999999999875211 1 1111 24888888877322 2222221 223445556667765
No 92
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.23 E-value=3.4e-11 Score=112.83 Aligned_cols=173 Identities=25% Similarity=0.279 Sum_probs=108.5
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC------------chhhhHHhhhcc-------------ccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR------------PAAIDQLVILGE-------------QVG 125 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r------------p~a~~~l~~~~~-------------~~g 125 (458)
+.|++.|+||.||||++.|++.+|++.|+||++|.|||-. |...+.++.... -.|
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~G 81 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGG 81 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCc
Confidence 4689999999999999999999999999999999999853 333444443321 125
Q ss_pred cceecCCCccChHH-------HHHhhHHHHH--hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEec--cc
Q 012680 126 VPVYTAGTEVKPSQ-------IAKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MT 194 (458)
Q Consensus 126 v~v~~~~~~~~~~~-------i~~~~l~~~~--~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda--~~ 194 (458)
+.++.++.+..... ..-+.++.+. ....|+||+|..|..--- .+...+ +.-.++++++|.+. +.
T Consensus 82 v~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCG-GFAmPi----Reg~AdeiyIVtSge~Ma 156 (278)
T COG1348 82 VKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCG-GFAMPI----REGYADEIYIVTSGEMMA 156 (278)
T ss_pred eEEeecCCCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeec-ceeeeh----hcccCcEEEEEecCchHH
Confidence 56665544322221 1223333331 134699999998865311 111111 11124888888876 33
Q ss_pred hhhHhHhh---hhhee--eeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCcccc
Q 012680 195 GQEAAALV---TTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 250 (458)
Q Consensus 195 g~~~~~~~---~~~~~--~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v~d 250 (458)
-..+.++. ..|.. .+++.|+|.|.-..+.....+....+..|.|+ ++..|+...
T Consensus 157 lYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~l--i~~vPr~~i 215 (278)
T COG1348 157 LYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQL--IHFVPRDNI 215 (278)
T ss_pred HHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCce--EeeccchHH
Confidence 33444444 44543 46689999998765555666777888899998 555554433
No 93
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.23 E-value=2.4e-11 Score=115.86 Aligned_cols=93 Identities=26% Similarity=0.388 Sum_probs=51.3
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh---hhccccccceecCC-----C------ccCh
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---ILGEQVGVPVYTAG-----T------EVKP 137 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~---~~~~~~gv~v~~~~-----~------~~~~ 137 (458)
|++.+||||+||||+|.+||.+|++.|++|.++|+|.+.|.....+. ......++.+-... . ...+
T Consensus 3 IvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp~p~~~~L~~~~~~v~~~~~ 82 (261)
T PF09140_consen 3 IVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELPVPSHFFLPPDQASVWEGEN 82 (261)
T ss_dssp EEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSSHHHHTTS-HH
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccCCccceeecccccccccCcc
Confidence 34445999999999999999999999999999999998875432221 11111122211100 0 0001
Q ss_pred H--HHHHhhHHHHHhcCCcEEEEeCCcccc
Q 012680 138 S--QIAKQGLEEAKKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 138 ~--~i~~~~l~~~~~~~~DvVIIDtpg~l~ 165 (458)
. ..+.+++..+. .++||+||||||...
T Consensus 83 ~~~~~L~q~l~~l~-~~~DfLVID~PGtd~ 111 (261)
T PF09140_consen 83 VEDKRLEQALADLE-GDLDFLVIDTPGTDD 111 (261)
T ss_dssp HHHHHHHHHHHHHH-HH-SEEEEEE-SSS-
T ss_pred hhHHHHHHHHHHHh-cCCCEEEEeCCCCCc
Confidence 1 13455666654 689999999998754
No 94
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.21 E-value=5.7e-11 Score=118.93 Aligned_cols=40 Identities=43% Similarity=0.622 Sum_probs=37.0
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++++++|+|||||||+|+++|.+++++|++|++++.||.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 6899999999999999999999999999999999999854
No 95
>PRK13768 GTPase; Provisional
Probab=99.16 E-value=1.4e-10 Score=113.16 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=38.1
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+.+++++|++|+||||++.+++.+++..|++|++|++|+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~ 42 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAV 42 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcc
Confidence 46889999999999999999999999999999999999864
No 96
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.14 E-value=9.9e-11 Score=112.48 Aligned_cols=87 Identities=20% Similarity=0.288 Sum_probs=55.6
Q ss_pred CcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc-chhhHhHhhhhheeeeee-ceeeeecccCCCCCcceee
Q 012680 153 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFNIEIGI-TGAILTKLDGDSRGGAALS 230 (458)
Q Consensus 153 ~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~-~g~~~~~~~~~~~~~~~i-~GvIlnk~D~~~~~g~~~~ 230 (458)
.|++|||||++.+-+ . +..+...|.+++|..++ .+-+....+.+..+.+++ .++|+||.+.... .++.
T Consensus 164 ~~~~IIDsaaG~gCp--V------i~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~ 233 (284)
T COG1149 164 ADLLIIDSAAGTGCP--V------IASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS--EIEE 233 (284)
T ss_pred cceeEEecCCCCCCh--H------HHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch--HHHH
Confidence 799999999887632 1 22334468888888873 443333333333334455 5799999943222 5677
Q ss_pred eeeccCCceeEeecCCccccC
Q 012680 231 VKEVSGKPIKLVGRGERMEDL 251 (458)
Q Consensus 231 i~~~~g~pI~fig~g~~v~dl 251 (458)
..+..|.|+ ++..|..+++
T Consensus 234 ~~~e~gi~i--l~~IPyd~~i 252 (284)
T COG1149 234 YCEEEGIPI--LGEIPYDKDI 252 (284)
T ss_pred HHHHcCCCe--eEECCcchhH
Confidence 777889999 7777766554
No 97
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.09 E-value=2.1e-10 Score=109.94 Aligned_cols=125 Identities=26% Similarity=0.291 Sum_probs=72.7
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC-----chhhh---------HHhhhcccc-ccceecCC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-----PAAID---------QLVILGEQV-GVPVYTAG 132 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r-----p~a~~---------~l~~~~~~~-gv~v~~~~ 132 (458)
++|.+|+++|..||||||++..|-.++..++.+..+|.+||.- |+.+| -+..+.-.. |--+.+.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 4688899999999999999999999999998899999999731 22211 111111100 00000111
Q ss_pred CccChHHHHHhhHHHHHhcCCcEEEEeCCccccc--cHHHHHHHHHHHhhcCcceEEEEEecc
Q 012680 133 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAM 193 (458)
Q Consensus 133 ~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~--d~~l~~el~~l~~~~~~~~vllVvda~ 193 (458)
.+....+.+.+.+++.. ..+|+|||||||.+.. +.+.-.-+..-....-|.-+++|||..
T Consensus 97 LF~tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~ 158 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTP 158 (366)
T ss_pred HHHHHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCC
Confidence 11111222234444433 5699999999998764 221111111122223467788888873
No 98
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.08 E-value=1.7e-10 Score=115.65 Aligned_cols=41 Identities=37% Similarity=0.557 Sum_probs=38.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.++++++|+|||||||+++++|.++++.|++|++|..||.+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 47999999999999999999999999999999999999854
No 99
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.04 E-value=2.4e-10 Score=112.56 Aligned_cols=218 Identities=19% Similarity=0.188 Sum_probs=107.5
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 152 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~ 152 (458)
|+++|++|+||||++.+|.+...... ++.-++.. ....+.. ......|+.+... ...+.+.+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~-~~g~v~~~---~~~~D~~-~~E~~rgiti~~~-------------~~~~~~~~ 63 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIH-KIGEVHGG---GATMDFM-EQERERGITIQSA-------------ATTCFWKD 63 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCc-ccccccCC---ccccCCC-ccccCCCcCeecc-------------EEEEEECC
Confidence 78899999999999999976543211 11111100 0001100 0112223322211 11123457
Q ss_pred CcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhhee--eeeeceeeeecccCCCCC--cc
Q 012680 153 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNI--EIGITGAILTKLDGDSRG--GA 227 (458)
Q Consensus 153 ~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~--~~~i~GvIlnk~D~~~~~--g~ 227 (458)
+.+++|||||...+. .+...... ..|.+++|+|+..+ +........+.. ..++ -+++||+|..... ..
T Consensus 64 ~~i~liDTPG~~df~----~~~~~~l~--~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~a~~~~~ 136 (270)
T cd01886 64 HRINIIDTPGHVDFT----IEVERSLR--VLDGAVAVFDAVAGVEPQTETVWRQADRYNVPR-IAFVNKMDRTGADFFRV 136 (270)
T ss_pred EEEEEEECCCcHHHH----HHHHHHHH--HcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCCCHHHH
Confidence 899999999976432 22222222 23788999999654 222222222222 2333 3799999975321 22
Q ss_pred eeeeeeccCCcee----EeecCCcc---ccCCCCCcchh-------hhhhhcccchhHHHHHHHHHHhH---HhHHHHHH
Q 012680 228 ALSVKEVSGKPIK----LVGRGERM---EDLEPFYPDRM-------AGRILGMGDVLSFVEKAQEVMQQ---EDAEEMQK 290 (458)
Q Consensus 228 ~~~i~~~~g~pI~----fig~g~~v---~dl~~f~p~~~-------~sr~lG~~dv~~l~e~~~e~~~e---~~~~~~~~ 290 (458)
...+.+.++..+. +++....+ -|+-.-....+ .....-+.+..+.++.+++.+.| +.++++++
T Consensus 137 ~~~l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e 216 (270)
T cd01886 137 VEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELME 216 (270)
T ss_pred HHHHHHHhCCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3444444444321 23333222 12211000000 00001122334444555554432 33445555
Q ss_pred HHhh-cccChhHHHHHHHHHHhhccc
Q 012680 291 KIMS-ANFDFNDFLKQTRTVARMGSM 315 (458)
Q Consensus 291 k~~~-~~~~~edl~~~l~~~~~~g~~ 315 (458)
++++ ++++.+++++.++.....|.+
T Consensus 217 ~yl~~~~~~~~el~~~l~~~~~~~~~ 242 (270)
T cd01886 217 KYLEGEEITEEEIKAAIRKGTIANKI 242 (270)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHcCcE
Confidence 5555 589999999999999988843
No 100
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.04 E-value=8e-10 Score=105.47 Aligned_cols=174 Identities=20% Similarity=0.282 Sum_probs=94.7
Q ss_pred EEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCchh---hhHHhhhccccccce-------ecCCCccCh----
Q 012680 73 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---IDQLVILGEQVGVPV-------YTAGTEVKP---- 137 (458)
Q Consensus 73 I~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a---~~~l~~~~~~~gv~v-------~~~~~~~~~---- 137 (458)
++++|. +|+|||++++.|+.+|+++|++|.+...=...+.. -.+...+....+++. +.......|
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~ 81 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETDRNGDALALQRLSGLPLDYEDVNPYRFEEPLSPHLAA 81 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCCCcHHHHHHHHHcCCCCChhhcCceeeCCCCCHHHHH
Confidence 456666 99999999999999999999999865510000000 001111111112110 000011111
Q ss_pred --------HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhh-e
Q 012680 138 --------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-N 206 (458)
Q Consensus 138 --------~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~-~ 206 (458)
.+.+.+.++.+. .+||+|||||||.+............+...+. .++++|+++..+ .++...+..+ .
T Consensus 82 ~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~-~pvilV~~~~~~~i~~~~~~i~~l~~ 159 (222)
T PRK00090 82 ALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQ-LPVILVVGVKLGCINHTLLTLEAIRA 159 (222)
T ss_pred HHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhC-CCEEEEECCCCcHHHHHHHHHHHHHH
Confidence 122344555443 68999999999876421110011223333343 778899887443 2222222222 2
Q ss_pred eeeeeceeeeecccCC-CCC--cceeeeeeccCCceeEeecCCcccc
Q 012680 207 IEIGITGAILTKLDGD-SRG--GAALSVKEVSGKPIKLVGRGERMED 250 (458)
Q Consensus 207 ~~~~i~GvIlnk~D~~-~~~--g~~~~i~~~~g~pI~fig~g~~v~d 250 (458)
.++.+.|+|+|+++.. ... .....+.+.++.|+ +|..|...+
T Consensus 160 ~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~gi~v--lg~ip~~~~ 204 (222)
T PRK00090 160 RGLPLAGWVANGIPPEPGLRHAENLATLERLLPAPL--LGELPYLAE 204 (222)
T ss_pred CCCCeEEEEEccCCCcchhHHHHHHHHHHHHcCCCe--EEecCCCCC
Confidence 3567889999999865 211 23345566788888 888877543
No 101
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.02 E-value=1.5e-09 Score=93.42 Aligned_cols=90 Identities=27% Similarity=0.330 Sum_probs=60.6
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecC--------CCccChHHHHHhh
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA--------GTEVKPSQIAKQG 144 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~--------~~~~~~~~i~~~~ 144 (458)
|+++|++|+||||++.+|+.+|+++|++|+++|+|+ +...+.+..... ....++.. +.........++.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~-~~~~~i~~g~~~~~~~g~~~~~n~~~~~~ 78 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVG-EIKLLLVMGMGRPGGEGCYCPENALLNAL 78 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccC-CceEEEEecccccCCCCCEehhhHHHHHH
Confidence 788999999999999999999999999999999998 322222221111 11110111 1111111356777
Q ss_pred HHHHHhcCCcEEEEeCCcccc
Q 012680 145 LEEAKKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 145 l~~~~~~~~DvVIIDtpg~l~ 165 (458)
+.++...++|++|+||++.+.
T Consensus 79 l~~~~~~~~~~vivDt~ag~e 99 (116)
T cd02034 79 LRHLVLTRDEQVVVDTEAGLE 99 (116)
T ss_pred HHHeEccCCCEEEEecHHHHH
Confidence 777655789999999998863
No 102
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.01 E-value=5.6e-10 Score=109.79 Aligned_cols=160 Identities=21% Similarity=0.311 Sum_probs=82.8
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh-hHhHhhhhheeeeee-ceeeeecccCCCCC--
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGI-TGAILTKLDGDSRG-- 225 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~-~~~~~~~~~~~~~~i-~GvIlnk~D~~~~~-- 225 (458)
+.++++.||||||..... ..+..... ..+.+++|+|+..+. ......+.+....++ ..+++||+|.....
T Consensus 61 ~~~~~i~liDtPG~~~f~----~~~~~~l~--~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~ 134 (268)
T cd04170 61 WKGHKINLIDTPGYADFV----GETRAALR--AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFD 134 (268)
T ss_pred ECCEEEEEEECcCHHHHH----HHHHHHHH--HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHH
Confidence 357899999999975322 22222222 248899999996552 222222222223333 34799999976432
Q ss_pred cceeeeeeccCCceeE----eecCCccccC---C-----CCCcchhhhhhhcccchhHHHHHHHHHHh---HHhHHHHHH
Q 012680 226 GAALSVKEVSGKPIKL----VGRGERMEDL---E-----PFYPDRMAGRILGMGDVLSFVEKAQEVMQ---QEDAEEMQK 290 (458)
Q Consensus 226 g~~~~i~~~~g~pI~f----ig~g~~v~dl---~-----~f~p~~~~sr~lG~~dv~~l~e~~~e~~~---e~~~~~~~~ 290 (458)
.....+.+.++.++.. ++.++.+..+ - .|.+........-..+.....+.+++.+. .+.++++++
T Consensus 135 ~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e 214 (268)
T cd04170 135 KTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELME 214 (268)
T ss_pred HHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 2334455556665531 2333332211 1 11110000000112233333444454442 233444555
Q ss_pred HHh-hcccChhHHHHHHHHHHhhccc
Q 012680 291 KIM-SANFDFNDFLKQTRTVARMGSM 315 (458)
Q Consensus 291 k~~-~~~~~~edl~~~l~~~~~~g~~ 315 (458)
+++ .++++.+++.+.++.....|.+
T Consensus 215 ~yl~~~~~~~~~l~~~l~~~~~~~~~ 240 (268)
T cd04170 215 KYLEGGELTEEELHAGLRRALRAGLL 240 (268)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhCCE
Confidence 555 4699999999999999988854
No 103
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.01 E-value=5.5e-10 Score=108.04 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=105.2
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 152 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~ 152 (458)
|++.|++|+||||++.+|......-.+..-+-+.+.+ .+.. ......++.+... ...+.+.+
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~----~D~~-~~e~~rg~ti~~~-------------~~~~~~~~ 63 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTR----TDTM-ELERQRGITIFSA-------------VASFQWED 63 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCccc----CCCc-hhHhhCCCceeee-------------eEEEEECC
Confidence 7889999999999999998654321110001111110 0000 0011122222111 01112357
Q ss_pred CcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhhee--eeeeceeeeecccCCC--CCcc
Q 012680 153 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNI--EIGITGAILTKLDGDS--RGGA 227 (458)
Q Consensus 153 ~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~--~~~i~GvIlnk~D~~~--~~g~ 227 (458)
+.+.|+||||...........+ . ..+.+++|+|+..+ +...+..+.+.. ..++ -+++||+|... ....
T Consensus 64 ~~i~liDTPG~~~f~~~~~~~l----~--~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~-iivvNK~D~~~a~~~~~ 136 (237)
T cd04168 64 TKVNLIDTPGHMDFIAEVERSL----S--VLDGAILVISAVEGVQAQTRILWRLLRKLNIPT-IIFVNKIDRAGADLEKV 136 (237)
T ss_pred EEEEEEeCCCccchHHHHHHHH----H--HhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECccccCCCHHHH
Confidence 8899999999864322222211 1 24888999999655 222222333222 2333 37999999763 2344
Q ss_pred eeeeeeccCCceeEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHHHHH
Q 012680 228 ALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTR 307 (458)
Q Consensus 228 ~~~i~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~~l~ 307 (458)
+.++.+.++.++..+-. |...+. +. ....+.+..-|.+.+.+++.+.+++..++++.+++++.++
T Consensus 137 ~~~i~~~~~~~~~~~~~-p~~~~~--~~------------~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~ 201 (237)
T cd04168 137 YQEIKEKLSSDIVPMQK-VGLAPN--IC------------ETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELS 201 (237)
T ss_pred HHHHHHHHCCCeEEEEC-CcEeee--ee------------eeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 55666777765533221 111110 00 0111112333344444555555555566999999999999
Q ss_pred HHHhhcc
Q 012680 308 TVARMGS 314 (458)
Q Consensus 308 ~~~~~g~ 314 (458)
.....|.
T Consensus 202 ~~~~~~~ 208 (237)
T cd04168 202 ARIAKRK 208 (237)
T ss_pred HHHHhCC
Confidence 9999884
No 104
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=98.96 E-value=1.7e-09 Score=98.47 Aligned_cols=141 Identities=25% Similarity=0.217 Sum_probs=74.0
Q ss_pred eecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCch---h-hhHHhh---hccccc--cceecCC-CccC-------
Q 012680 75 LAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA---A-IDQLVI---LGEQVG--VPVYTAG-TEVK------- 136 (458)
Q Consensus 75 i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~---a-~~~l~~---~~~~~g--v~v~~~~-~~~~------- 136 (458)
++|. +|+||||++.+|+.+|+++|++|.++........ . .+.+.. ...... .++.... ....
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 81 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKTNSDALLLQNISGTALDWDEVNPYAFALPLSPHIAADQEG 81 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCCchHHHHHHHHcCCCCchhccCCeeeCCCCChHHHHHHhC
Confidence 3444 9999999999999999999999998742221111 0 011110 000000 0011110 0000
Q ss_pred ---hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhhe-eeee
Q 012680 137 ---PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIG 210 (458)
Q Consensus 137 ---~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~ 210 (458)
..+.+.+.+..+. .+||+||||+||.+............+...+. +++++|+++..+ .++......+. ..++
T Consensus 82 ~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~-~~vilV~~~~~~~~~~~~~~~~~l~~~~~~ 159 (166)
T TIGR00347 82 RPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLLQ-LPVILVVRVKLGTINHTLLTVEHARQTGLT 159 (166)
T ss_pred CCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHhC-CCEEEEECCCCcHHHHHHHHHHHHHHCCCC
Confidence 0112344555543 68999999999875421100001122333333 788999988443 22222233333 3678
Q ss_pred eceeeee
Q 012680 211 ITGAILT 217 (458)
Q Consensus 211 i~GvIln 217 (458)
+.|+|+|
T Consensus 160 i~gvv~N 166 (166)
T TIGR00347 160 LAGVILN 166 (166)
T ss_pred eEEEEeC
Confidence 8999987
No 105
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.94 E-value=1.2e-09 Score=107.43 Aligned_cols=222 Identities=15% Similarity=0.128 Sum_probs=107.0
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc-cCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~-~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
|.|+++|++|+||||++.+|.+....-.. ..-++... .+....+. .......++.+.... ..+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~-~g~v~~~~~~~~t~~D~-~~~e~~rg~si~~~~-------------~~~~ 67 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIRE-AGAVKARKSRKHATSDW-MEIEKQRGISVTSSV-------------MQFE 67 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCccc-CceecccccCCCccCCC-cHHHHhCCCCeEEEE-------------EEEe
Confidence 68999999999999999999765432111 11111100 00000000 011112232222110 1123
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeee-ceeeeecccCCCCC--
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGDSRG-- 225 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlnk~D~~~~~-- 225 (458)
+.++.+.|+||||...+.......+ -..+.+++|+|+..+ +......+.+....++ .-+++||+|.....
T Consensus 68 ~~~~~i~liDTPG~~df~~~~~~~l------~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~ 141 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTYRTL------TAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPL 141 (267)
T ss_pred eCCEEEEEEECCCchHHHHHHHHHH------HHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHH
Confidence 4678999999999753322222221 235889999999654 2222233333322222 34789999975432
Q ss_pred cceeeeeeccCCcee----EeecCCcc---ccCCCCCcchhhhhhhcc--cchhHHHHHHHHHHhHHhHHHHHHHHhh-c
Q 012680 226 GAALSVKEVSGKPIK----LVGRGERM---EDLEPFYPDRMAGRILGM--GDVLSFVEKAQEVMQQEDAEEMQKKIMS-A 295 (458)
Q Consensus 226 g~~~~i~~~~g~pI~----fig~g~~v---~dl~~f~p~~~~sr~lG~--~dv~~l~e~~~e~~~e~~~~~~~~k~~~-~ 295 (458)
..+..+.+.++.++. +++.+..+ .|+-......+..- .|. .....+-+...|.+.+. .+++++++.+ .
T Consensus 142 ~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~-~~~~~~~~~~~p~~~~e~~~e~-~~~l~e~~~e~~ 219 (267)
T cd04169 142 ELLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDRG-AGGATIAPEETKGLDDPKLDEL-GGDLAEQLREEL 219 (267)
T ss_pred HHHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecCC-CCCccceeccCCcccHHHHHhc-CHHHHHHHhCCC
Confidence 223455666676553 23444332 22221111111000 010 00011011111333333 3445555555 4
Q ss_pred ccChhHHHHHHHHHHhhccc
Q 012680 296 NFDFNDFLKQTRTVARMGSM 315 (458)
Q Consensus 296 ~~~~edl~~~l~~~~~~g~~ 315 (458)
+++.+++.+.++.....|.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~ 239 (267)
T cd04169 220 ELLEGAGPEFDQEAFLAGEL 239 (267)
T ss_pred ccchhhhHHHhHHHHHcCCE
Confidence 79999988888888877743
No 106
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=98.94 E-value=3.7e-09 Score=94.84 Aligned_cols=115 Identities=25% Similarity=0.323 Sum_probs=69.6
Q ss_pred eEEEeec-cccccchhHhhHHHHHHHhcCCceEEeeccccCchhh------------h---------------HHhhhcc
Q 012680 71 TVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------D---------------QLVILGE 122 (458)
Q Consensus 71 ~iI~i~G-~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~------------~---------------~l~~~~~ 122 (458)
++|.++| .+|+||||+|.+||..+++.|++|++||+|.+.+... + .+..+..
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 4677777 6999999999999999999999999999998765321 1 1111111
Q ss_pred ---ccccceecCCCccChHH-----HHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc
Q 012680 123 ---QVGVPVYTAGTEVKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 193 (458)
Q Consensus 123 ---~~gv~v~~~~~~~~~~~-----i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~ 193 (458)
..++.+++......+.. .+...+..++ ..||+||||+|+....... .. +.. ..|.+++|+.+.
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~--~~---~l~--~~D~ii~v~~~~ 151 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDT--QA---VLE--LADKIILVVRPD 151 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHH--HH---HHT--THSEEEEEEETT
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHH--HH---HHH--HCCEEEEEECCC
Confidence 12344444333222222 3455666665 4899999999998763221 00 111 248889988763
No 107
>COG1159 Era GTPase [General function prediction only]
Probab=98.90 E-value=3.3e-09 Score=103.50 Aligned_cols=187 Identities=18% Similarity=0.239 Sum_probs=110.0
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
-.++++|.|.+||||+..+|. |.|+.+++--++ + +.....|+.. .
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~------G~KisIvS~k~Q---T-----TR~~I~GI~t---------------------~ 51 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALV------GQKISIVSPKPQ---T-----TRNRIRGIVT---------------------T 51 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHh------cCceEeecCCcc---h-----hhhheeEEEE---------------------c
Confidence 378889999999999999997 999998874322 1 1222223322 1
Q ss_pred cCCcEEEEeCCccccccHHHHHHHH--HHHhhcCcceEEEEEeccc--hhhHhHhhhhheeeee-eceeeeecccCCCCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNIEIG-ITGAILTKLDGDSRG 225 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~--~l~~~~~~~~vllVvda~~--g~~~~~~~~~~~~~~~-i~GvIlnk~D~~~~~ 225 (458)
+++.+|+|||||.+.....+...|. .....-..|-+++|+|+.. +.....++..+.. .+ ..-+++||+|.....
T Consensus 52 ~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-~~~pvil~iNKID~~~~~ 130 (298)
T COG1159 52 DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK-TKTPVILVVNKIDKVKPK 130 (298)
T ss_pred CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh-cCCCeEEEEEccccCCcH
Confidence 4789999999998765333332221 2222334588899999943 3322233333333 21 234789999976444
Q ss_pred cceeeeeeccCCceeEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHH-------hHHhHHHHHHHHhhcccC
Q 012680 226 GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-------QQEDAEEMQKKIMSANFD 298 (458)
Q Consensus 226 g~~~~i~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~-------~e~~~~~~~~k~~~~~~~ 298 (458)
..++.+.+.. ....+|.....+|..-|.+ +..+.+...+.+ .++...+...++...++.
T Consensus 131 ~~l~~~~~~~-------------~~~~~f~~ivpiSA~~g~n-~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEii 196 (298)
T COG1159 131 TVLLKLIAFL-------------KKLLPFKEIVPISALKGDN-VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEII 196 (298)
T ss_pred HHHHHHHHHH-------------HhhCCcceEEEeeccccCC-HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHH
Confidence 3222222221 1112333333344444444 556666666655 456677777888888888
Q ss_pred hhHHHHHHH
Q 012680 299 FNDFLKQTR 307 (458)
Q Consensus 299 ~edl~~~l~ 307 (458)
.|.++..++
T Consensus 197 REk~~~~l~ 205 (298)
T COG1159 197 REKLLLLLR 205 (298)
T ss_pred HHHHHHhcc
Confidence 888777654
No 108
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.87 E-value=8.3e-09 Score=96.84 Aligned_cols=171 Identities=26% Similarity=0.347 Sum_probs=95.6
Q ss_pred EEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCc---hhhhHHhhhccccc----cceecCCCccChHHHH--
Q 012680 72 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---AAIDQLVILGEQVG----VPVYTAGTEVKPSQIA-- 141 (458)
Q Consensus 72 iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp---~a~~~l~~~~~~~g----v~v~~~~~~~~~~~i~-- 141 (458)
.++++|. +|+|||+++..|+.+|.++|.+|.++..=.... ...+.+..+..... ...+.......|.-..
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDDEDAELIRELFGLSEPPDDPSPYTFDEPASPHLAAEL 81 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCSSHHHHHHHHCCTCCCHHHHECEEESSSS-HHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCCchHHHHHHHhCCCcccccccccccCcccCHHHHhhc
Confidence 5677777 999999999999999999999998665321111 11122221111100 0111111122222111
Q ss_pred -------Hhh-HHHHHhcCCcEEEEeCCccccc---cHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhh-ee
Q 012680 142 -------KQG-LEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NI 207 (458)
Q Consensus 142 -------~~~-l~~~~~~~~DvVIIDtpg~l~~---d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~ 207 (458)
.+. +..+ ...+|++||+++|.... ...+.. ++.+.+. .++++|+++..+ .++...+..+ ..
T Consensus 82 ~~~~~~~~~i~~~~l-~~~~D~vlVEGag~~~~~~~~~~~n~---dia~~L~-a~vIlV~~~~~g~i~~~l~~~~~~~~~ 156 (199)
T PF13500_consen 82 EGVDIDLERIIYKEL-AEEYDVVLVEGAGGLMVPIFSGDLNA---DIAKALG-APVILVASGRLGTINHTLLTIEALKQR 156 (199)
T ss_dssp HT----HHHHHHHHC-HTTTCEEEEEESSSTTSECCTTEEHH---HHHHHHT--EEEEEEESSTTHHHHHHHHHHHHHCT
T ss_pred cCCcccHHHHHHHHH-hhcCCEEEEeCCcccCcccccChHHH---HHHHHcC-CCEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 111 1232 35899999999988764 222233 3334444 688999988544 3333333333 34
Q ss_pred eeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCccccCC
Q 012680 208 EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE 252 (458)
Q Consensus 208 ~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v~dl~ 252 (458)
++++.|+|+|+++.. .....+.+.++.|+ +|..|...++.
T Consensus 157 g~~v~GvI~N~~~~~---~~~~~l~~~~~i~v--lg~iP~~~~L~ 196 (199)
T PF13500_consen 157 GIRVLGVILNRVPEP---ENLEALREKSGIPV--LGVIPEDPDLS 196 (199)
T ss_dssp TS-EEEEEEEECTCC---HHHHHHHHHHCCEE--CE---SSTT--
T ss_pred CCCEEEEEEECCCCH---HHHHHHHHhCCCCE--EEECCCCcccc
Confidence 678999999998655 35556667788888 88888777654
No 109
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.82 E-value=1.8e-08 Score=81.80 Aligned_cols=34 Identities=50% Similarity=0.759 Sum_probs=31.7
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEee
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 105 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd 105 (458)
+++++|++|+||||++.+||..|++.|++|+++|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4678899999999999999999999999999988
No 110
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.80 E-value=3.7e-08 Score=91.01 Aligned_cols=146 Identities=23% Similarity=0.315 Sum_probs=84.0
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceec--CCCcc-ChHHHHHhhHHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--AGTEV-KPSQIAKQGLEEA 148 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~--~~~~~-~~~~i~~~~l~~~ 148 (458)
+++++|--||||||+..+|.. ....|+++.+|-+|..... +|.-.. ...++++.. .++-. +....+...+..+
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~-iD~~~l--~~~~~~v~~l~~gcicc~~~~~~~~~l~~l 77 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVN-IDAELL--QEDGVPVVELNNGCICCTLRDDLVEALRRL 77 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTH-HHHHHH--HTTT-EEEEECTTTESS-TTS-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccc-cchhhh--cccceEEEEecCCCcccccHHHHHHHHHHH
Confidence 788999999999999999998 6678999999999865433 332211 122443333 22211 1122233444444
Q ss_pred Hh-c--CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeee-ceeeeecccCC
Q 012680 149 KK-K--NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGD 222 (458)
Q Consensus 149 ~~-~--~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlnk~D~~ 222 (458)
.. . .+|+|||++.|..+.. .++..-..+...+..+.++.|+|+..-.........+.+.+.. .-||+||.|..
T Consensus 78 ~~~~~~~~d~IiIE~sG~a~p~-~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 78 LREYEERPDRIIIETSGLADPA-PLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLV 154 (178)
T ss_dssp CCCCHGC-SEEEEEEECSSGGG-GHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGH
T ss_pred HHhcCCCcCEEEECCccccccc-hhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccC
Confidence 32 3 5899999999965433 2322234555566678899999994432222222222233333 34899999864
No 111
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.80 E-value=7.8e-09 Score=93.63 Aligned_cols=136 Identities=26% Similarity=0.299 Sum_probs=86.0
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-----------hHHhh------hccccccceec
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI------LGEQVGVPVYT 130 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-----------~~l~~------~~~~~gv~v~~ 130 (458)
++|.+|+++|++||||||+|.+|...|.++|++|.++|+|..|.+.. +.+.. +-...|+-++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviv 100 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIV 100 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 46889999999999999999999999999999999999998664422 12221 22234666555
Q ss_pred CCCccChHHHHHhhHHHHH-hcCCcEEEEeCCccccc--c------HHHHHHHHHHHhhcCcc----eEEEEEec--cch
Q 012680 131 AGTEVKPSQIAKQGLEEAK-KKNVDVVIVDTAGRLQI--D------KAMMDELKDVKRVLNPT----EVLLVVDA--MTG 195 (458)
Q Consensus 131 ~~~~~~~~~i~~~~l~~~~-~~~~DvVIIDtpg~l~~--d------~~l~~el~~l~~~~~~~----~vllVvda--~~g 195 (458)
+ ..+|....++...... ...|=-|+||||--.+. | .+...++..+..+-.|+ ..-+++|. .+.
T Consensus 101 a--~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE~P~~Pel~l~t~~~~v 178 (197)
T COG0529 101 A--FISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEAPENPELHLDTDRNSV 178 (197)
T ss_pred E--eeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCCCCCCCeeEeccccCCH
Confidence 4 5556655554444433 24577899999976653 2 12333444444333332 33666665 333
Q ss_pred hhHhHhhhhh
Q 012680 196 QEAAALVTTF 205 (458)
Q Consensus 196 ~~~~~~~~~~ 205 (458)
.+.+..+..+
T Consensus 179 ee~v~~i~~~ 188 (197)
T COG0529 179 EECVEQILDL 188 (197)
T ss_pred HHHHHHHHHH
Confidence 4545444433
No 112
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.78 E-value=2.9e-08 Score=105.34 Aligned_cols=174 Identities=22% Similarity=0.315 Sum_probs=95.6
Q ss_pred EEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccc-----cC-c--hhh--hHHh-hhc---c-ccc-cce-ecC---
Q 012680 73 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDV-----YR-P--AAI--DQLV-ILG---E-QVG-VPV-YTA--- 131 (458)
Q Consensus 73 I~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~-----~r-p--~a~--~~l~-~~~---~-~~g-v~v-~~~--- 131 (458)
|+|+|. +++|||++++.|+++|+++|++|.....-. .. + ... .++. ..+ . ... .|+ +..
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~~~ 80 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPKGN 80 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcCCC
Confidence 467777 899999999999999999999999555320 00 0 001 1111 010 0 000 111 111
Q ss_pred --------CCccC--------------hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHH---HHHHHHHHhhcCcceE
Q 012680 132 --------GTEVK--------------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAM---MDELKDVKRVLNPTEV 186 (458)
Q Consensus 132 --------~~~~~--------------~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l---~~el~~l~~~~~~~~v 186 (458)
+.... ..+.+++.+..+. .+||+||||++|.+.. ..+ -.....+...+. .++
T Consensus 81 ~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~-~~~~~~d~s~~~lA~~l~-apV 157 (475)
T TIGR00313 81 FTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAE-INLLKRDLANMRIAELAN-ADA 157 (475)
T ss_pred CcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccc-cccCcCCchHHHHHHHhC-CCE
Confidence 10010 0122344454443 5799999999987642 000 011223333443 678
Q ss_pred EEEEeccchh---hHhHhhhhhee--eeeeceeeeecccCCCCC--cceeeeeeccCCceeEeecCCccccC
Q 012680 187 LLVVDAMTGQ---EAAALVTTFNI--EIGITGAILTKLDGDSRG--GAALSVKEVSGKPIKLVGRGERMEDL 251 (458)
Q Consensus 187 llVvda~~g~---~~~~~~~~~~~--~~~i~GvIlnk~D~~~~~--g~~~~i~~~~g~pI~fig~g~~v~dl 251 (458)
++|+|...+. .+......+.. ...+.|+|+|+++.+... ..+..+.+.+|+|+ +|+.+...++
T Consensus 158 ILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~~gipv--LG~ip~~~~l 227 (475)
T TIGR00313 158 ILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEELTGIPV--LGVLPYDENL 227 (475)
T ss_pred EEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHhhCCCE--EEEecCCCcC
Confidence 9999985542 22222222232 257899999999865211 22233455679998 8888877665
No 113
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.76 E-value=6.2e-08 Score=89.33 Aligned_cols=144 Identities=23% Similarity=0.321 Sum_probs=94.4
Q ss_pred CC-eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCc---cChHHHHHhh
Q 012680 69 RP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE---VKPSQIAKQG 144 (458)
Q Consensus 69 ~p-~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~---~~~~~i~~~~ 144 (458)
+| ..|-+.|++||||||+..++...|+++ +++.+|..|.+...-.+.+... .+.+++...+. ..+......+
T Consensus 11 ~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~~~a 86 (202)
T COG0378 11 RPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMNLEA 86 (202)
T ss_pred CceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCCcHHHHHHH
Confidence 45 678888999999999999999999988 9999999999875444444432 45555443222 2355566677
Q ss_pred HHHHHhc--CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCC
Q 012680 145 LEEAKKK--NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 145 l~~~~~~--~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
++++... ..|++||++.|.+... ...++ ...-.++|+|...|.+.-...--..-. -.-+|+||.|..
T Consensus 87 i~~l~~~~~~~Dll~iEs~GNL~~~--~sp~L-------~d~~~v~VidvteGe~~P~K~gP~i~~--aDllVInK~DLa 155 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVGNLVCP--FSPDL-------GDHLRVVVIDVTEGEDIPRKGGPGIFK--ADLLVINKTDLA 155 (202)
T ss_pred HHHHhhcCCcCCEEEEecCcceecc--cCcch-------hhceEEEEEECCCCCCCcccCCCceeE--eeEEEEehHHhH
Confidence 7776532 3799999999955311 01111 113568899998887655432111111 234899999976
Q ss_pred CCCcc
Q 012680 223 SRGGA 227 (458)
Q Consensus 223 ~~~g~ 227 (458)
...+.
T Consensus 156 ~~v~~ 160 (202)
T COG0378 156 PYVGA 160 (202)
T ss_pred HHhCc
Confidence 55544
No 114
>PRK00784 cobyric acid synthase; Provisional
Probab=98.75 E-value=2.2e-08 Score=106.72 Aligned_cols=176 Identities=20% Similarity=0.292 Sum_probs=96.9
Q ss_pred EEEeecc-ccccchhHhhHHHHHHHhcCCceEEeecc-----cc-Cch-----hhhHHhhh-cc-----ccccceecC--
Q 012680 72 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGD-----VY-RPA-----AIDQLVIL-GE-----QVGVPVYTA-- 131 (458)
Q Consensus 72 iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D-----~~-rp~-----a~~~l~~~-~~-----~~gv~v~~~-- 131 (458)
-++|+|. +|+|||++++.|+++|+++|++|.....= .. .++ ....+... .. ..+..++..
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P~~~~~~s 83 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLLKPQS 83 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCCCchhccCCEEecCCC
Confidence 4777777 99999999999999999999988854430 00 000 00011000 00 000001100
Q ss_pred ---------CC-------------ccChHHHHHhhHHHHHhcCCcEEEEeCCcccc-c---cHHHHHHHHHHHhhcCcce
Q 012680 132 ---------GT-------------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ-I---DKAMMDELKDVKRVLNPTE 185 (458)
Q Consensus 132 ---------~~-------------~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~-~---d~~l~~el~~l~~~~~~~~ 185 (458)
+. .....+.+.+.+..+. ..+|++|||++|.+. . +.. .....+...+. .+
T Consensus 84 p~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~--~~~~dlak~l~-~P 159 (488)
T PRK00784 84 DRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRD--IANMGFAEAAD-AP 159 (488)
T ss_pred CCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCC--chhHHHHHHcC-CC
Confidence 00 0011223344454433 589999999986654 1 111 12334555555 78
Q ss_pred EEEEEeccch---hhHhHhhhhhee--eeeeceeeeecccCCCC--CcceeeeeeccCCceeEeecCCccccCCC
Q 012680 186 VLLVVDAMTG---QEAAALVTTFNI--EIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMEDLEP 253 (458)
Q Consensus 186 vllVvda~~g---~~~~~~~~~~~~--~~~i~GvIlnk~D~~~~--~g~~~~i~~~~g~pI~fig~g~~v~dl~~ 253 (458)
+++|+++..+ ..+......+.. ...+.|||+|+++.+.. ......+.+.+++|+ +|..|...++..
T Consensus 160 VILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~gipv--LG~iP~~~~L~~ 232 (488)
T PRK00784 160 VILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELTGVPV--LGVLPYLDDLRL 232 (488)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCCcCCCc
Confidence 9999998443 222222233332 35889999999986421 111222445578888 888888776553
No 115
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.73 E-value=7.4e-08 Score=91.13 Aligned_cols=140 Identities=19% Similarity=0.274 Sum_probs=79.3
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCC-ccChHHHHHhhHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLE 146 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~-~~~~~~i~~~~l~ 146 (458)
+.+++|.++|..|+||||+..+|+..+. .+.+|.++..|+......+.+...+ ..+..+..+. ..........++.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~~~--~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRKYG--APAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHHcC--CcEEEEcCCCcccCChHHHHHHHH
Confidence 4688999999999999999999988765 3579999999986432222332221 1122222222 1111222234454
Q ss_pred HHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhH-hhhhheeeeeeceeeeecccCC
Q 012680 147 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 147 ~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
.+...++|+|||||.|.+.... .. .+.....+.|+|+..+..... ....+. ...-+++||+|..
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~----~~-----~~~~~~~i~Vvd~~~~d~~~~~~~~~~~---~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA----DF-----DLGEHMRVVLLSVTEGDDKPLKYPGMFK---EADLIVINKADLA 161 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc----cc-----ccccCeEEEEEecCcccchhhhhHhHHh---hCCEEEEEHHHcc
Confidence 4433478999999999532111 00 112244467778754432211 111111 1124899999974
No 116
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3e-08 Score=108.65 Aligned_cols=222 Identities=21% Similarity=0.224 Sum_probs=124.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+.|.|.+.++-.+|||||+..|.++-....+.--+-+++. ..| ........|+.+-.+... +
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~----~~D-~~e~EqeRGITI~saa~s-------------~ 70 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAA----TMD-WMEQEQERGITITSAATT-------------L 70 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCc----cCC-CcHHHHhcCCEEeeeeeE-------------E
Confidence 5789999999999999999999876654333111111111 111 112233456655443221 1
Q ss_pred Hhc-CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeee-ceeeeecccCCC--
Q 012680 149 KKK-NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGDS-- 223 (458)
Q Consensus 149 ~~~-~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlnk~D~~~-- 223 (458)
.|. +|.+.||||||...+-.+...+|+.+ |.+++|+|+..| +...+.+|......++ .-+++||+|...
T Consensus 71 ~~~~~~~iNlIDTPGHVDFt~EV~rslrvl------DgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 71 FWKGDYRINLIDTPGHVDFTIEVERSLRVL------DGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred EEcCceEEEEeCCCCccccHHHHHHHHHhh------cceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccC
Confidence 345 48999999999987655555555443 899999999666 5555666666655555 348899999752
Q ss_pred CCcceeeeeeccCCcee----EeecCCcccc---CCCCCcchhh-hhhhc----ccchhHHHHHHHHHHhH---HhHHHH
Q 012680 224 RGGAALSVKEVSGKPIK----LVGRGERMED---LEPFYPDRMA-GRILG----MGDVLSFVEKAQEVMQQ---EDAEEM 288 (458)
Q Consensus 224 ~~g~~~~i~~~~g~pI~----fig~g~~v~d---l~~f~p~~~~-sr~lG----~~dv~~l~e~~~e~~~e---~~~~~~ 288 (458)
.......+...++.++. .+|..+.+.+ +.......|. +-... ..+..+..+.+++.+.+ +-++++
T Consensus 145 ~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l 224 (697)
T COG0480 145 FYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEEL 224 (697)
T ss_pred hhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHH
Confidence 22333445555555333 3344222221 1110111111 00000 01222222333333321 223566
Q ss_pred HHHHhhc-ccChhHHHHHHHHHHhhcc
Q 012680 289 QKKIMSA-NFDFNDFLKQTRTVARMGS 314 (458)
Q Consensus 289 ~~k~~~~-~~~~edl~~~l~~~~~~g~ 314 (458)
+++++++ +++.+++.+.++.-...+.
T Consensus 225 ~e~yl~g~e~~~~~i~~~i~~~~~~~~ 251 (697)
T COG0480 225 MEKYLEGEEPTEEEIKKALRKGTIAGK 251 (697)
T ss_pred HHHHhcCCCccHHHHHHHHHHhhhccc
Confidence 7777766 8999999999988887743
No 117
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.69 E-value=5e-08 Score=86.03 Aligned_cols=126 Identities=24% Similarity=0.227 Sum_probs=79.7
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 152 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~ 152 (458)
++++|+ |+||||++..|+.+|.++|.+|..+.+...
T Consensus 3 ~~~~~~-~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~------------------------------------------- 38 (134)
T cd03109 3 GFGTGT-DIGKTVATAILARALKEKGYRVAPLKPVQT------------------------------------------- 38 (134)
T ss_pred EEeCCC-CcCHHHHHHHHHHHHHHCCCeEEEEecCCC-------------------------------------------
Confidence 445574 499999999999999999999996554421
Q ss_pred CcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhh-eeeeeeceeeeecccCCCC--Ccc
Q 012680 153 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDSR--GGA 227 (458)
Q Consensus 153 ~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlnk~D~~~~--~g~ 227 (458)
+|++|||++|.+......-....++...++ .++++|.+...+ .++...+... ...+.+.|+|.|+++.... ...
T Consensus 39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~ 117 (134)
T cd03109 39 YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLN 117 (134)
T ss_pred CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhh
Confidence 699999999887631100111223344443 578888877433 2232222222 3366788999999875432 122
Q ss_pred eeeeeeccCCceeEeecC
Q 012680 228 ALSVKEVSGKPIKLVGRG 245 (458)
Q Consensus 228 ~~~i~~~~g~pI~fig~g 245 (458)
...+.+.++.|+ +|..
T Consensus 118 ~~~i~~~~gip~--LG~I 133 (134)
T cd03109 118 VETIERLTGIPV--LGIV 133 (134)
T ss_pred HHHHHHhcCCCE--EEeC
Confidence 445566777777 6654
No 118
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.68 E-value=1.3e-07 Score=85.67 Aligned_cols=144 Identities=19% Similarity=0.255 Sum_probs=79.4
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecC--CC-----ccChHHHHHhh
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA--GT-----EVKPSQIAKQG 144 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~--~~-----~~~~~~i~~~~ 144 (458)
+++++|..|+||||+...++... .|+++.++..|..... ++...... .+..++.. +. ..+-...+.+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~-~d~~~~~~--~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVG-IDNQLVVD--TDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccc-hhHHHHhC--CCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 67899999999999999887653 4889988887754333 22221111 22223322 11 11111222222
Q ss_pred HHHH--HhcCCcEEEEeCCccccccHHHHHHH---HHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeee-ceeeeec
Q 012680 145 LEEA--KKKNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK 218 (458)
Q Consensus 145 l~~~--~~~~~DvVIIDtpg~l~~d~~l~~el---~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlnk 218 (458)
+..+ ....+|+|+|||||..... .....+ ..+......+.++.|+|+............+..++.. .-||+||
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~p~-~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk 155 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLADPG-PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNK 155 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCCHH-HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEec
Confidence 2332 1247999999999987532 223221 1233444568889999986543322211222222222 3389999
Q ss_pred ccC
Q 012680 219 LDG 221 (458)
Q Consensus 219 ~D~ 221 (458)
+|.
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 983
No 119
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.66 E-value=1.2e-07 Score=90.19 Aligned_cols=177 Identities=24% Similarity=0.278 Sum_probs=103.6
Q ss_pred eEEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccc---cCchhhhHHhhhccccccc-------eecCCCccChHH
Q 012680 71 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDV---YRPAAIDQLVILGEQVGVP-------VYTAGTEVKPSQ 139 (458)
Q Consensus 71 ~iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~---~rp~a~~~l~~~~~~~gv~-------v~~~~~~~~~~~ 139 (458)
+.++++|. .|+|||.+++.|+.+++.+|++|.....=- ...+..++...+.+..+++ .|....+.+|.-
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~sPhl 82 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPLSPHL 82 (223)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCCCchHHHHHHhcCCCcccccccceecCCCCCcHH
Confidence 46788888 999999999999999999999988544210 0000001222222222222 122222333332
Q ss_pred ------------HHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhH-hHhhhh
Q 012680 140 ------------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEA-AALVTT 204 (458)
Q Consensus 140 ------------i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~-~~~~~~ 204 (458)
.+...+..+. ..||+|||+++|++.+.-.--..+.++....+ .++++|+....| ..+ +....-
T Consensus 83 Aa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~-lpvILV~~~~LGtINHtlLt~eal 160 (223)
T COG0132 83 AAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQ-LPVILVVGIKLGTINHTLLTVEAL 160 (223)
T ss_pred HHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcC-CCEEEEecCCccHHHHHHHHHHHH
Confidence 1233333444 48999999999998752111123344445454 788999987444 333 332223
Q ss_pred heeeeeeceeeeecccCCCCCc--ceeeeeeccCCceeEeecCCccccC
Q 012680 205 FNIEIGITGAILTKLDGDSRGG--AALSVKEVSGKPIKLVGRGERMEDL 251 (458)
Q Consensus 205 ~~~~~~i~GvIlnk~D~~~~~g--~~~~i~~~~g~pI~fig~g~~v~dl 251 (458)
-..++++.|+|+|......... ....+...++.|+ .|..|...+.
T Consensus 161 ~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~--~g~~p~~~~~ 207 (223)
T COG0132 161 RARGLPLAGWVANGINPELDHYAEINATLLKRIGAPL--LGIIPYLPES 207 (223)
T ss_pred HHCCCCEEEEEEccCCCchhHHHHHHHHHHHhcCCCc--cccccCCccc
Confidence 3557899999999987553221 2224666788888 6766665543
No 120
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.66 E-value=1.2e-07 Score=91.20 Aligned_cols=174 Identities=18% Similarity=0.201 Sum_probs=93.8
Q ss_pred EEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCc-----hhh-hHHhhhccccccce---------ecCC---
Q 012680 72 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-----AAI-DQLVILGEQVGVPV---------YTAG--- 132 (458)
Q Consensus 72 iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp-----~a~-~~l~~~~~~~gv~v---------~~~~--- 132 (458)
.++++|. +|+|||+++..|+.+|.++|++|.++..=..+. ... .....+....+++. +...
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p~~~~~~~a~ 83 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVSSIELPYEAVNPIALSEEESS 83 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccCCccCCCCCchHHHHHHHHhcCCCCCHHhccCeecCCCcCh
Confidence 4777776 999999999999999999999988655311110 000 00111111111110 1100
Q ss_pred ----CccChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh--hHhHhhhhh-
Q 012680 133 ----TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF- 205 (458)
Q Consensus 133 ----~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~--~~~~~~~~~- 205 (458)
...+. +.+.+.+..+. .+||+||||++|++...-.....+..+.... ..++++|+....+. ++.-....+
T Consensus 84 ~~~~~~i~~-~~i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~-~~pvilV~~~~lg~in~~lLt~~~l~ 160 (231)
T PRK12374 84 VAHSCPINY-TLMSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQE-QLPVLMVVGIQEGCINHALLTAQAIA 160 (231)
T ss_pred HHcCCcCCH-HHHHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHh-CCCEEEEECCCcChHHHHHHHHHHHH
Confidence 01111 12344444433 6899999999996653110001122222223 37888888775442 222222223
Q ss_pred eeeeeeceeeeecccCCCCC--cceeeeeeccCCceeEeecCCcccc
Q 012680 206 NIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPIKLVGRGERMED 250 (458)
Q Consensus 206 ~~~~~i~GvIlnk~D~~~~~--g~~~~i~~~~g~pI~fig~g~~v~d 250 (458)
..++.+.|+|+|+++..... .....+.+..+.|+ +|..|...+
T Consensus 161 ~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~~~~~--lg~iP~~~~ 205 (231)
T PRK12374 161 NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPL--IGELPYLPR 205 (231)
T ss_pred hCCCcEEEEEEeCccCchhhhhhHHHHHHHhcCCCE--EEEeCCCCC
Confidence 34778999999999865221 11233345567777 777766544
No 121
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.66 E-value=1.9e-08 Score=97.25 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=28.7
Q ss_pred eeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 75 LAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 75 i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++|++||||||+|.++..++...|++|.+|..||..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence 579999999999999999999999999999999843
No 122
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.65 E-value=1.5e-07 Score=90.61 Aligned_cols=42 Identities=24% Similarity=0.447 Sum_probs=37.4
Q ss_pred EEEe-eccccccchhHhhHHHHHHHhcCCceEEeeccccCchh
Q 012680 72 VILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 113 (458)
Q Consensus 72 iI~i-~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a 113 (458)
++++ .|+||+||||++.+||.+++++|++|+++|+|+..+..
T Consensus 4 i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~ 46 (241)
T PRK13886 4 IHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATF 46 (241)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchh
Confidence 4444 49999999999999999999999999999999988754
No 123
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.63 E-value=3e-07 Score=93.46 Aligned_cols=124 Identities=21% Similarity=0.266 Sum_probs=79.0
Q ss_pred cCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc-----hhhh---------HHhhhccccccceecCC
Q 012680 67 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-----AAID---------QLVILGEQVGVPVYTAG 132 (458)
Q Consensus 67 ~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp-----~a~~---------~l~~~~~~~gv~v~~~~ 132 (458)
...+.+++++|+.+|||||++.-||..+-++|++|.++|+|+-.+ +.+. .+..+.......+=...
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~is 149 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSIS 149 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccC
Confidence 345779999999999999999999999999999999999998543 2211 11111111111111111
Q ss_pred CccChHH---HHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEec
Q 012680 133 TEVKPSQ---IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 192 (458)
Q Consensus 133 ~~~~~~~---i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda 192 (458)
+...+.. .+..+++.+. +..|++||||||...-. ..+.-..++...++|+.++.+-++
T Consensus 150 P~~~~~~~i~~v~rL~~~a~-~~~~~ilIdT~GWi~G~-~g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 150 PQGFPGRYIAGVARLVDLAK-KEADFILIDTDGWIKGW-GGLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred CCCChHHHHHHHHHHHHHhh-ccCCEEEEcCCCceeCc-hHHHHHHHHHhhcCCCEEEEeccc
Confidence 1222222 2345555554 34799999999987632 233344567777888887766444
No 124
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.62 E-value=1.6e-07 Score=104.07 Aligned_cols=141 Identities=23% Similarity=0.275 Sum_probs=81.7
Q ss_pred EEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 72 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 72 iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
.++++|. +|+|||+++..|+.+|.++|++|.+...+...|........ .+..+......+.+.+.+..+.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~--------~~~~~~~~~~~~~I~~~~~~l~- 74 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEA--------LLASGQLDELLEEIVARYHALA- 74 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHH--------HHhccCChHHHHHHHHHHHHhc-
Confidence 4677766 99999999999999999999999976643332221111111 0111111112233344454433
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhH---hh-hhhe--eeeeeceeeeec--cc
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAA---LV-TTFN--IEIGITGAILTK--LD 220 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~---~~-~~~~--~~~~i~GvIlnk--~D 220 (458)
.+||+||||+++....+.........+...+. .++++|+++..+ .++.+ .. ..|. ....+.|+|+|+ ++
T Consensus 75 ~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~-~pVILV~~~~~~si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v~ 153 (684)
T PRK05632 75 KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLG-AEVVLVSSGGNDTPEELAERIELAASSFGGAKNANILGVIINKLNAP 153 (684)
T ss_pred cCCCEEEEeCcCCCCcCcccCchHHHHHHHhC-CCEEEEECCCCCChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCCC
Confidence 68999999998654421100111234444454 789999987422 22222 22 2332 457889999999 55
Q ss_pred CC
Q 012680 221 GD 222 (458)
Q Consensus 221 ~~ 222 (458)
..
T Consensus 154 ~~ 155 (684)
T PRK05632 154 VD 155 (684)
T ss_pred HH
Confidence 44
No 125
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.57 E-value=1.7e-07 Score=84.55 Aligned_cols=44 Identities=39% Similarity=0.536 Sum_probs=39.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCch
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 112 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~ 112 (458)
+|.+|+++|.+||||||+|..|...|...|.+|.++|+|..|..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 36899999999999999999999999999999999999977654
No 126
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.51 E-value=9.2e-08 Score=102.58 Aligned_cols=159 Identities=21% Similarity=0.243 Sum_probs=81.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchh-hhHHhhhccccccceecCCCccChHHHHHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-IDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a-~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
..+.|+++|+.|+||||++.+|.++.... .+..-++.-...... .|. .......|+.+..... .
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i-~~~g~v~~~~~~~~~~~D~-~~~E~~rgiSi~~~~~-------------~ 73 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAI-QEAGTVKGRKSGRHATSDW-MEMEKQRGISVTSSVM-------------Q 73 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCc-cccceeeccccCccccCCC-cHHHHhhCCceeeeeE-------------E
Confidence 56799999999999999999997543321 111122210000000 010 0111223333322111 1
Q ss_pred HHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeee-ceeeeecccCCCCC
Q 012680 148 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGDSRG 225 (458)
Q Consensus 148 ~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlnk~D~~~~~ 225 (458)
+.+.++.+.|+||||...+.......+ ...|.+++|+|+..+ +.....+..+....++ .-+++||+|.....
T Consensus 74 ~~~~~~~inliDTPG~~df~~~~~~~l------~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 74 FPYRDCLINLLDTPGHEDFSEDTYRTL------TAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred EEECCEEEEEEECCCchhhHHHHHHHH------HHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccC
Confidence 123578899999999754332222222 125899999999655 2222233333222222 34789999975432
Q ss_pred --cceeeeeeccCCcee----EeecCCcc
Q 012680 226 --GAALSVKEVSGKPIK----LVGRGERM 248 (458)
Q Consensus 226 --g~~~~i~~~~g~pI~----fig~g~~v 248 (458)
..+..+.+.++.++. ++|.+..+
T Consensus 148 ~~~~l~~i~~~l~~~~~p~~~Pig~~~~f 176 (526)
T PRK00741 148 PLELLDEIEEVLGIACAPITWPIGMGKRF 176 (526)
T ss_pred HHHHHHHHHHHhCCCCeeEEeccccCCce
Confidence 223455566666543 34555443
No 127
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=98.48 E-value=3.3e-07 Score=87.21 Aligned_cols=41 Identities=37% Similarity=0.447 Sum_probs=38.2
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
-+.|++.|+||+||||.++.||..|++-+.+|++|+.||.+
T Consensus 19 lKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 19 LKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred eeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 46788999999999999999999999999999999999965
No 128
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.48 E-value=4e-07 Score=101.17 Aligned_cols=129 Identities=21% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..+.|+++|+.++||||++.+|...........-+-+.+. ..|... .....|+.+-... ..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~----~~D~~~-~e~~rgiti~~~~-------------~~~ 70 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAA----TMDWME-QEKERGITITSAA-------------TTV 70 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCcc----ccCCCH-HHHhcCCCEecce-------------EEE
Confidence 5689999999999999999999764432111000001000 001000 1111233221110 111
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh-hHhHhhhhhe--eeeeeceeeeecccCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFN--IEIGITGAILTKLDGD 222 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~-~~~~~~~~~~--~~~~i~GvIlnk~D~~ 222 (458)
.+.++.++++||||....... ...... ..|.+++|+|+..+. .....++.+. ...++ -+++||+|..
T Consensus 71 ~~~~~~i~liDTPG~~~~~~~----~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~ 140 (689)
T TIGR00484 71 FWKGHRINIIDTPGHVDFTVE----VERSLR--VLDGAVAVLDAVGGVQPQSETVWRQANRYEVPR-IAFVNKMDKT 140 (689)
T ss_pred EECCeEEEEEECCCCcchhHH----HHHHHH--HhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCE-EEEEECCCCC
Confidence 235788999999998643222 211111 238899999996542 1111222221 12333 3799999975
No 129
>PRK00007 elongation factor G; Reviewed
Probab=98.44 E-value=8.9e-07 Score=98.37 Aligned_cols=130 Identities=22% Similarity=0.229 Sum_probs=68.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..+.|+++|+.++||||++.+|.+...... +..-++.. ....|... .....|+.+-.... .+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~-~~g~v~~~---~~~~D~~~-~E~~rg~ti~~~~~-------------~~ 70 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNH-KIGEVHDG---AATMDWME-QEQERGITITSAAT-------------TC 70 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCC---cccCCCCH-HHHhCCCCEeccEE-------------EE
Confidence 467999999999999999999976554321 11001100 00011110 11122332222111 12
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhh--eeeeeeceeeeecccCCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTF--NIEIGITGAILTKLDGDS 223 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~--~~~~~i~GvIlnk~D~~~ 223 (458)
.+.++.+.+|||||...+ ..++..... ..|.+++|+|+..+ +.....+..+ ....++ -+++||+|...
T Consensus 71 ~~~~~~~~liDTPG~~~f----~~ev~~al~--~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~-iv~vNK~D~~~ 141 (693)
T PRK00007 71 FWKDHRINIIDTPGHVDF----TIEVERSLR--VLDGAVAVFDAVGGVEPQSETVWRQADKYKVPR-IAFVNKMDRTG 141 (693)
T ss_pred EECCeEEEEEeCCCcHHH----HHHHHHHHH--HcCEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence 345789999999997542 223222222 23788999999655 2211222222 223333 38999999753
No 130
>PRK12739 elongation factor G; Reviewed
Probab=98.44 E-value=9.8e-07 Score=98.06 Aligned_cols=130 Identities=21% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..+.|+++|+.++||||++..|.+...... +..-++. +....|.+. .....|+.+-.... .+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~-~~~~v~~---~~~~~D~~~-~E~~rgiti~~~~~-------------~~ 68 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSH-KIGEVHD---GAATMDWME-QEQERGITITSAAT-------------TC 68 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCcc-ccccccC---CccccCCCh-hHhhcCCCccceeE-------------EE
Confidence 568899999999999999999986544211 1110110 000111110 11122222211110 12
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhh--eeeeeeceeeeecccCCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTF--NIEIGITGAILTKLDGDS 223 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~--~~~~~i~GvIlnk~D~~~ 223 (458)
.+.++.+++|||||...+ ..++..... ..|.+++|+|+..+ +.....+..+ ....++ -+++||+|...
T Consensus 69 ~~~~~~i~liDTPG~~~f----~~e~~~al~--~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~-iv~iNK~D~~~ 139 (691)
T PRK12739 69 FWKGHRINIIDTPGHVDF----TIEVERSLR--VLDGAVAVFDAVSGVEPQSETVWRQADKYGVPR-IVFVNKMDRIG 139 (691)
T ss_pred EECCEEEEEEcCCCHHHH----HHHHHHHHH--HhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence 246789999999997542 223222222 23889999999655 2111222222 123343 38999999763
No 131
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.43 E-value=4.7e-07 Score=89.31 Aligned_cols=139 Identities=16% Similarity=0.223 Sum_probs=75.8
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC----chhhhHHhhhccccccc---eecCCCcc--ChHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR----PAAIDQLVILGEQVGVP---VYTAGTEV--KPSQIA 141 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r----p~a~~~l~~~~~~~gv~---v~~~~~~~--~~~~i~ 141 (458)
++|.++|.+||||||++.+|+..|+++| +|.+|+.|+.. ++ .|..... ..|.+ .++..... ....-+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g-~Ds~~~~--~aGa~~v~~~s~~~~~~~~~~~~l 77 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDG-TDTGRHF--DAGADVVYGLTDGEWVASGRDRSL 77 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCC-CCcHHHH--HCCCcEEEEecCCeEEEEecCCCH
Confidence 4899999999999999999999999999 89999999854 32 1111111 11111 11111110 000112
Q ss_pred HhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc---hhhHhHhhhhheeeeeeceeeeec
Q 012680 142 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT---GQEAAALVTTFNIEIGITGAILTK 218 (458)
Q Consensus 142 ~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~---g~~~~~~~~~~~~~~~i~GvIlnk 218 (458)
.+.+..+. .++|+||||+++......-.+..+ ...+++++.-...+ ..+.++.+...++.+.+ ..++|+
T Consensus 78 ~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~------~~~~~~~l~p~~~s~~d~~~lve~~~~~~~~l~~-~~li~~ 149 (274)
T PRK14493 78 DDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDM------DADSDVVARAPTAADLDTEDLVAALESQPPYVTL-ESLVAK 149 (274)
T ss_pred HHHHHhhC-cCCCEEEEECCCCCCCCEEEEEec------ccCCcEEEecCCCCccCHHHHHHHHHhcCCCCCH-HHHHHH
Confidence 33344443 479999999998765322111111 01132333322211 23445555555554544 367777
Q ss_pred ccC
Q 012680 219 LDG 221 (458)
Q Consensus 219 ~D~ 221 (458)
+..
T Consensus 150 ~~~ 152 (274)
T PRK14493 150 VKR 152 (274)
T ss_pred Hhc
Confidence 754
No 132
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.7e-06 Score=88.01 Aligned_cols=104 Identities=24% Similarity=0.471 Sum_probs=76.2
Q ss_pred hhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcc
Q 012680 43 QLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE 122 (458)
Q Consensus 43 ~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~ 122 (458)
..+..-.+||...||++.. +..++++.|-||.||||+...++..+++++ +|++|.+. ....|.+..++
T Consensus 73 ~Ri~tg~~EldRVLGGG~V-------~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE----ES~~QiklRA~ 140 (456)
T COG1066 73 PRISTGIEELDRVLGGGLV-------PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE----ESLQQIKLRAD 140 (456)
T ss_pred ccccCChHHHHhhhcCCcc-------cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCC----cCHHHHHHHHH
Confidence 3467788999999998754 467899999999999999999999999998 99999986 45667777777
Q ss_pred ccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 123 QVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 123 ~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
..|++.... ...+..-+.+.+..+...++|++|||+
T Consensus 141 RL~~~~~~l--~l~aEt~~e~I~~~l~~~~p~lvVIDS 176 (456)
T COG1066 141 RLGLPTNNL--YLLAETNLEDIIAELEQEKPDLVVIDS 176 (456)
T ss_pred HhCCCccce--EEehhcCHHHHHHHHHhcCCCEEEEec
Confidence 766543111 111111223334444457899999997
No 133
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.43 E-value=1.3e-06 Score=86.41 Aligned_cols=138 Identities=17% Similarity=0.263 Sum_probs=84.1
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCC---ccChHHHHHhh
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---EVKPSQIAKQG 144 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~---~~~~~~i~~~~ 144 (458)
.+..++.++|.+|+||||+...|...|... +++.++..|.......+-+ ...|++++.... .-.....+..+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~rI----~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARI----RATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHHH----HhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 457799999999999999999999888754 5899999997654322222 223455443322 22223456677
Q ss_pred HHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeee-ceeeeecccCC
Q 012680 145 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGD 222 (458)
Q Consensus 145 l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlnk~D~~ 222 (458)
+..+...+.|++||++.|.+.....+ . + .....+.|++...+.+. ...|...+.. .-+|+||+|..
T Consensus 177 l~~L~~~~~d~liIEnvGnLvcPa~f--d---l----ge~~~v~vlsV~eg~dk---plKyp~~f~~ADIVVLNKiDLl 243 (290)
T PRK10463 177 APRLPLDDNGILFIENVGNLVCPASF--D---L----GEKHKVAVLSVTEGEDK---PLKYPHMFAAASLMLLNKVDLL 243 (290)
T ss_pred HHHHhhcCCcEEEEECCCCccCCCcc--c---h----hhceeEEEEECcccccc---chhccchhhcCcEEEEEhHHcC
Confidence 77777678899999999974211111 1 1 11223456666555331 1123222222 34899999974
No 134
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.42 E-value=2e-06 Score=82.21 Aligned_cols=107 Identities=24% Similarity=0.361 Sum_probs=65.7
Q ss_pred HHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhh--cc-ccc
Q 012680 49 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL--GE-QVG 125 (458)
Q Consensus 49 ~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~--~~-~~g 125 (458)
.++|.++++++.. ...++.++|.+|+||||++..+|...++.|.+|++++++.+.+..+.++... .. ..+
T Consensus 9 i~~lD~~l~GGi~-------~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~ 81 (225)
T PRK09361 9 CKMLDELLGGGFE-------RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSN 81 (225)
T ss_pred cHHHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhC
Confidence 4667888865532 4679999999999999999999999999999999999994444333333211 00 012
Q ss_pred cceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCcc
Q 012680 126 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 163 (458)
Q Consensus 126 v~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~ 163 (458)
+.++.........+.+......+. .++++||||+-..
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~a 118 (225)
T PRK09361 82 IIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATS 118 (225)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHH
Confidence 323322111111112222222222 5789999999654
No 135
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.40 E-value=2.6e-06 Score=80.92 Aligned_cols=53 Identities=34% Similarity=0.450 Sum_probs=44.8
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.+|..+++++.. +..++.++|.+|+||||++..+|..++.+|.+|++++++..
T Consensus 6 ~~LD~~l~GGi~-------~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 6 KGLDELLGGGVE-------RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred hHHHHHhcCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 467777765432 46899999999999999999999999989999999998743
No 136
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.40 E-value=1.2e-06 Score=82.66 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=58.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhc-c--ccccceecCCCccChHHHHHhhH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG-E--QVGVPVYTAGTEVKPSQIAKQGL 145 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~-~--~~gv~v~~~~~~~~~~~i~~~~l 145 (458)
+..++.++|++|+|||+++..++....+.|.+|++++++-+.+..+.+..... + ..++.++...........+....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 90 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTS 90 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHH
Confidence 46899999999999999999999999888999999999854444333322110 0 12233332211111111233333
Q ss_pred HHHHhcCCcEEEEeCCcc
Q 012680 146 EEAKKKNVDVVIVDTAGR 163 (458)
Q Consensus 146 ~~~~~~~~DvVIIDtpg~ 163 (458)
..+.+..+++|+||+-..
T Consensus 91 ~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 91 KFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHhhcCccEEEEeCcHH
Confidence 333444789999998554
No 137
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.39 E-value=3.3e-07 Score=82.74 Aligned_cols=132 Identities=25% Similarity=0.337 Sum_probs=74.7
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
-|+++|.|.|||||+-.+|. |.++.+-. .|+. +.....|... ..
T Consensus 2 ~ialvG~PNvGKStLfN~Lt------g~~~~v~n----~pG~-----Tv~~~~g~~~---------------------~~ 45 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT------GAKQKVGN----WPGT-----TVEKKEGIFK---------------------LG 45 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEEEEE----STTS-----SSEEEEEEEE---------------------ET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCceecC----CCCC-----CeeeeeEEEE---------------------ec
Confidence 37889999999999999887 76644211 1211 1111111111 13
Q ss_pred CCcEEEEeCCccccccHHHHHHH--HHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeee-ceeeeecccCCCCCcce
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSRGGAA 228 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el--~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlnk~D~~~~~g~~ 228 (458)
+..+.+||+||..........|. ......-++|-+++|+|+..-+........+.+ .++ .-+++||+|...+.+..
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e-~g~P~vvvlN~~D~a~~~g~~ 124 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLE-LGIPVVVVLNKMDEAERKGIE 124 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHH-TTSSEEEEEETHHHHHHTTEE
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEEeCHHHHHHcCCE
Confidence 57899999999765422111111 112223467999999999766555555544432 233 34899999987666544
Q ss_pred e---eeeeccCCcee
Q 012680 229 L---SVKEVSGKPIK 240 (458)
Q Consensus 229 ~---~i~~~~g~pI~ 240 (458)
. .+.+.+|+||.
T Consensus 125 id~~~Ls~~Lg~pvi 139 (156)
T PF02421_consen 125 IDAEKLSERLGVPVI 139 (156)
T ss_dssp E-HHHHHHHHTS-EE
T ss_pred ECHHHHHHHhCCCEE
Confidence 3 45567899984
No 138
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.38 E-value=9.9e-07 Score=88.96 Aligned_cols=150 Identities=20% Similarity=0.276 Sum_probs=81.3
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCC-----ccChHHHHHhh
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-----EVKPSQIAKQG 144 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~-----~~~~~~i~~~~ 144 (458)
-.+.+++|--||||||+..+|... ..|++++++-.|.... .+|.-........+.-+..++ ..+-...+.+.
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v-~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l 80 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEV-SVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCc-cccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHH
Confidence 358999999999999999999754 3689999998885432 233221111111121122222 11111222222
Q ss_pred HHHHHh--cCCcEEEEeCCccccccHHHHHHH---HHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeee-ceeeeec
Q 012680 145 LEEAKK--KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK 218 (458)
Q Consensus 145 l~~~~~--~~~DvVIIDtpg~l~~d~~l~~el---~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlnk 218 (458)
+..... ..+|+|||+|.|... ...++..+ ..+...+.-+.++.|||+............+..++.. .-||+||
T Consensus 81 ~~~~~~~~~~~d~IvIEttG~a~-p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~IvlnK 159 (318)
T PRK11537 81 LDNLDKGNIQFDRLVIECTGMAD-PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK 159 (318)
T ss_pred HHHHhccCCCCCEEEEECCCccC-HHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEec
Confidence 222221 159999999999864 22333332 1223333447789999996543222211112222222 3489999
Q ss_pred ccCCC
Q 012680 219 LDGDS 223 (458)
Q Consensus 219 ~D~~~ 223 (458)
+|...
T Consensus 160 ~Dl~~ 164 (318)
T PRK11537 160 TDVAG 164 (318)
T ss_pred cccCC
Confidence 99754
No 139
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.1e-06 Score=89.59 Aligned_cols=158 Identities=24% Similarity=0.324 Sum_probs=95.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh---cCCceEEeecc-ccCchhhhHHhhhccccccceecCCCccChHHHHHhh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK---QGKSCMLVAGD-VYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 144 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~---~G~kVllVd~D-~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~ 144 (458)
+.|..+|..+|-+||||++.+|..+-.. .| -|.+- ..+.+..|++ ...++.|+.+.++--
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG----~Vk~rk~~~~a~SDWM-~iEkqRGISVtsSVM----------- 74 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAG----TVKGRKSGKHAKSDWM-EIEKQRGISVTSSVM----------- 74 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcc----eeeeccCCcccccHHH-HHHHhcCceEEeeEE-----------
Confidence 4568889999999999999999765332 12 11111 1122233333 466778888876521
Q ss_pred HHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHh-Hhhhhh--eeeeeeceeeeecccC
Q 012680 145 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTF--NIEIGITGAILTKLDG 221 (458)
Q Consensus 145 l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~-~~~~~~--~~~~~i~GvIlnk~D~ 221 (458)
+....++-+.|+||||.-.+.++....|.++ |.+++|+|+.-|-+.- ..+-.. ..+++|. -++||+|.
T Consensus 75 --qF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAv------DsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~-TFiNKlDR 145 (528)
T COG4108 75 --QFDYADCLVNLLDTPGHEDFSEDTYRTLTAV------DSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIF-TFINKLDR 145 (528)
T ss_pred --EeccCCeEEeccCCCCccccchhHHHHHHhh------heeeEEEecccCccHHHHHHHHHHhhcCCceE-EEeecccc
Confidence 1123577799999999887766666555443 8889999997663221 111111 2244442 58899998
Q ss_pred CCCC--cceeeeeeccCC---cee-EeecCCccccC
Q 012680 222 DSRG--GAALSVKEVSGK---PIK-LVGRGERMEDL 251 (458)
Q Consensus 222 ~~~~--g~~~~i~~~~g~---pI~-fig~g~~v~dl 251 (458)
..+. ..+.++.+.+++ |+. +||.|..+..+
T Consensus 146 ~~rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F~Gv 181 (528)
T COG4108 146 EGRDPLELLDEIEEELGIQCAPITWPIGMGKDFKGV 181 (528)
T ss_pred ccCChHHHHHHHHHHhCcceecccccccCCccccee
Confidence 7655 334445555544 443 57777665443
No 140
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.32 E-value=2.2e-06 Score=80.45 Aligned_cols=123 Identities=22% Similarity=0.229 Sum_probs=66.7
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEe--eccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV--d~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
.|+++|+.++||||++..|.....+.|..-... ..| ... .....|+.+-.... .+.
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d--------~~~-~E~~rg~Ti~~~~~-------------~~~ 61 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEID--------KAP-EEKARGITINTAHV-------------EYE 61 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhccccccccccccc--------CCh-hhhhcCccEEeeee-------------Eec
Confidence 588899999999999999988766555321100 011 100 11122332221110 112
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeeec--eeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGIT--GAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~--GvIlnk~D~~ 222 (458)
++++.+++|||||... +..++.. .....|.+++|+|+..+ .........+....++. -+++||+|..
T Consensus 62 ~~~~~i~~iDtPG~~~----~~~~~~~--~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 62 TANRHYAHVDCPGHAD----YIKNMIT--GAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred CCCeEEEEEECcCHHH----HHHHHHH--HhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 2467899999999753 2333221 22235889999999654 11111222222233443 3678999974
No 141
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.30 E-value=1e-06 Score=91.80 Aligned_cols=101 Identities=27% Similarity=0.396 Sum_probs=72.1
Q ss_pred HHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccc-eeeeE----ecc-CCCeEEEeec
Q 012680 4 IRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGE-VSELV----FAK-SRPTVILLAG 77 (458)
Q Consensus 4 i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~-~~~~~----~~~-~~p~iI~i~G 77 (458)
+.+.|+++||++.++..+++.++++....+. .......+.+.+.+.+.+.++.. ...+. +.. .+|.+|+++|
T Consensus 185 LaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~--~~~~ra~VR~~V~~~L~~~l~~~~a~~y~la~~i~~~k~p~vil~~G 262 (475)
T PRK12337 185 LAQSLMAAGLAPDVARRLARETERDLRRSGD--RVVRRDQLRRKVEALLLEEAGEEVARRYRLLRSIRRPPRPLHVLIGG 262 (475)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccCCCeEEEEEC
Confidence 6789999999999999999999988743221 11223456777777777766532 11111 112 3689999999
Q ss_pred cccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 78 LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 78 ~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.+|+||||++.+||..+.- ..++..|..|
T Consensus 263 ~~G~GKSt~a~~LA~~lg~----~~ii~tD~iR 291 (475)
T PRK12337 263 VSGVGKSVLASALAYRLGI----TRIVSTDAVR 291 (475)
T ss_pred CCCCCHHHHHHHHHHHcCC----cEEeehhHHH
Confidence 9999999999999977642 2378888755
No 142
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.29 E-value=5.9e-06 Score=77.84 Aligned_cols=140 Identities=21% Similarity=0.275 Sum_probs=76.3
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcc--ccccc-eecCCCc-----cChHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE--QVGVP-VYTAGTE-----VKPSQIA 141 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~--~~gv~-v~~~~~~-----~~~~~i~ 141 (458)
|..+.++|.+|+||||+...+...+... .++.++..|.+.....+.+...+. ..++- +...+.. .+... .
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ 78 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASM-N 78 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHH-H
Confidence 4578999999999999999998877653 568888888776432222222111 00110 1011111 11111 1
Q ss_pred HhhHHHHH--hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeee-ceeeeec
Q 012680 142 KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK 218 (458)
Q Consensus 142 ~~~l~~~~--~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlnk 218 (458)
..++.... ..++|++||+|.|... ....... + .+.+++|+|+..+.+.... ....+.. .-+|+||
T Consensus 79 ~~~L~~l~~~~~~~D~iiIEt~G~~l-~~~~~~~-------l-~~~~i~vvD~~~~~~~~~~---~~~qi~~ad~~~~~k 146 (199)
T TIGR00101 79 LEAVAEMEARFPPLEMVFIESGGDNL-SATFSPE-------L-ADLTIFVIDVAAGDKIPRK---GGPGITRSDLLVINK 146 (199)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCc-ccccchh-------h-hCcEEEEEEcchhhhhhhh---hHhHhhhccEEEEEh
Confidence 22233322 2469999999999421 1111111 1 2668999999766543221 1122222 3389999
Q ss_pred ccCCC
Q 012680 219 LDGDS 223 (458)
Q Consensus 219 ~D~~~ 223 (458)
.|...
T Consensus 147 ~d~~~ 151 (199)
T TIGR00101 147 IDLAP 151 (199)
T ss_pred hhccc
Confidence 99763
No 143
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.29 E-value=8.2e-06 Score=78.52 Aligned_cols=55 Identities=29% Similarity=0.501 Sum_probs=45.6
Q ss_pred HhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 47 IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 47 ~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.-.+.|.++++++.. ++.+++++|.+|+||||++..+++...++|.+|++++++-
T Consensus 9 tGi~~LD~~l~gG~~-------~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 9 TGNEELDRKLGGGIP-------FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cCCHHHHHhhCCCCc-------CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 334667888876532 5689999999999999999999988888899999999973
No 144
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.27 E-value=3.1e-06 Score=81.53 Aligned_cols=113 Identities=25% Similarity=0.347 Sum_probs=71.5
Q ss_pred HHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcccc-
Q 012680 46 KIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV- 124 (458)
Q Consensus 46 ~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~- 124 (458)
++..++|.+.+++... +..++++.|.+|+||||++.+++..+.++|.++++++++......++++..++...
T Consensus 7 ~~~~~~ld~~l~ggi~-------~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~ 79 (230)
T PRK08533 7 ELSRDELHKRLGGGIP-------AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDIN 79 (230)
T ss_pred EEEEeeeehhhCCCCC-------CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchH
Confidence 4455677777775421 35699999999999999999999988889999999998866555555543222111
Q ss_pred ------ccceecCCC-ccC---hHHHHHhhHHHHHhcCCcEEEEeCCcccc
Q 012680 125 ------GVPVYTAGT-EVK---PSQIAKQGLEEAKKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 125 ------gv~v~~~~~-~~~---~~~i~~~~l~~~~~~~~DvVIIDtpg~l~ 165 (458)
.+.++...+ ... ....+...+......++++++||.|....
T Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 80 KKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 111111100 111 12233444444434578999999988653
No 145
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.27 E-value=3e-06 Score=81.97 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=45.3
Q ss_pred CcEEEEeCCccccc-----cHHHHHHHHH-HHhhcC-c-ceEEEEEeccch---hhHhHhhhhheeeeeeceeeeecccC
Q 012680 153 VDVVIVDTAGRLQI-----DKAMMDELKD-VKRVLN-P-TEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDG 221 (458)
Q Consensus 153 ~DvVIIDtpg~l~~-----d~~l~~el~~-l~~~~~-~-~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlnk~D~ 221 (458)
.|+.||||||.... .......+.. +...+. + +-+++|+|+..+ +++.+.++.+.+...-+-+|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 79999999999743 1222223322 222232 3 356788887433 45567777666543334479999998
Q ss_pred CCCCcce
Q 012680 222 DSRGGAA 228 (458)
Q Consensus 222 ~~~~g~~ 228 (458)
...+..+
T Consensus 205 ~~~~~~~ 211 (240)
T smart00053 205 MDEGTDA 211 (240)
T ss_pred CCccHHH
Confidence 7655433
No 146
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.27 E-value=7.5e-07 Score=82.74 Aligned_cols=128 Identities=22% Similarity=0.236 Sum_probs=66.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
-++|+++|+.|+||||++.+|.............-.. ....+... .....++..-....... ..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~----~~~~~~~~-~e~~~~~ti~~~~~~~~-----------~~ 66 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETK----NAFLDKHP-EERERGITIDLSFISFE-----------KN 66 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHH----HCHHHSSH-HHHHCTSSSSSEEEEEE-----------BT
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccc----cccccccc-hhhhccccccccccccc-----------cc
Confidence 4689999999999999999998766432221110000 00000000 00111111100000000 02
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-h----hHhHhhhhheeeeeeceeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-Q----EAAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~----~~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
...+.+.||||||... +..++... ...+|.+++|||+..+ + +.+..+..+ .++ .-|++||+|..
T Consensus 67 ~~~~~i~~iDtPG~~~----f~~~~~~~--~~~~D~ailvVda~~g~~~~~~~~l~~~~~~--~~p-~ivvlNK~D~~ 135 (188)
T PF00009_consen 67 ENNRKITLIDTPGHED----FIKEMIRG--LRQADIAILVVDANDGIQPQTEEHLKILREL--GIP-IIVVLNKMDLI 135 (188)
T ss_dssp ESSEEEEEEEESSSHH----HHHHHHHH--HTTSSEEEEEEETTTBSTHHHHHHHHHHHHT--T-S-EEEEEETCTSS
T ss_pred ccccceeecccccccc----eeecccce--ecccccceeeeeccccccccccccccccccc--ccc-eEEeeeeccch
Confidence 3578899999999753 33333222 2346899999999644 1 122222222 233 44899999976
No 147
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.25 E-value=3.3e-06 Score=82.79 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=36.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+..+++++|.+|+||||+|..++...+++|.+|++++.+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 4679999999999999999999999888999999999883
No 148
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.24 E-value=2.3e-06 Score=78.52 Aligned_cols=43 Identities=35% Similarity=0.604 Sum_probs=39.1
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+++.+|+++|.+||||||++..|+..+...|.++.+++.|..+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4678999999999999999999999999889999999999654
No 149
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.23 E-value=1.1e-05 Score=68.90 Aligned_cols=91 Identities=29% Similarity=0.310 Sum_probs=59.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
+..+++.|++|+||||++..||..+...++.+.+++++........... ....................+..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999887778898988865543322111 0011111112233334455555555
Q ss_pred hcCCcEEEEeCCccccc
Q 012680 150 KKNVDVVIVDTAGRLQI 166 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~ 166 (458)
...++++|||.+..+..
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 44579999999988764
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.23 E-value=1.5e-06 Score=85.66 Aligned_cols=116 Identities=18% Similarity=0.211 Sum_probs=62.4
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
.|+++|.+|+||||+..+|. |.++..+..-++ .. .....++. . ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~------~~~~~~vs~~~~---TT-----r~~i~~i~--~-------------------~~ 46 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH------GQKISITSPKAQ---TT-----RNRISGIH--T-------------------TG 46 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcEeecCCCCC---cc-----cCcEEEEE--E-------------------cC
Confidence 47888999999999999987 666654432211 10 00111111 0 13
Q ss_pred CCcEEEEeCCccccccHHHHHHHH--HHHhhcCcceEEEEEeccchhhHhHhhhhheeeeee-ceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~--~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlnk~D~~ 222 (458)
++.++++||||.......+...+. .....-.+|.+++|+|+.......+.+..+....+. .-+|+||+|..
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCC
Confidence 467999999997643222211111 111223468889999995432221222111111122 34889999975
No 151
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.22 E-value=1.1e-05 Score=71.68 Aligned_cols=93 Identities=22% Similarity=0.270 Sum_probs=57.8
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhh---ccccccceecCCCccChHH-HHHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL---GEQVGVPVYTAGTEVKPSQ-IAKQGLEE 147 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~---~~~~gv~v~~~~~~~~~~~-i~~~~l~~ 147 (458)
+++++|++|+||||++..++..+...|.+|++++++.........+... ....+..++.......... ........
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 3678999999999999999999999999999999986554333222111 1112233333322222222 11222233
Q ss_pred HHhcCCcEEEEeCCccc
Q 012680 148 AKKKNVDVVIVDTAGRL 164 (458)
Q Consensus 148 ~~~~~~DvVIIDtpg~l 164 (458)
....+++++|||.+..+
T Consensus 81 ~~~~~~~~lviDe~~~~ 97 (165)
T cd01120 81 RERGGDDLIILDELTRL 97 (165)
T ss_pred HhCCCCEEEEEEcHHHH
Confidence 34467899999998765
No 152
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.21 E-value=1.1e-05 Score=81.05 Aligned_cols=106 Identities=21% Similarity=0.321 Sum_probs=67.4
Q ss_pred hHHHhHHHHHHhhc-cceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcc
Q 012680 44 LVKIVRDELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE 122 (458)
Q Consensus 44 ~~~~v~~el~~llg-~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~ 122 (458)
.+..-...|..+|| ++.. +.+++.+.|++|+||||+|..++....+.|.+|++||+.-. .++. +..
T Consensus 35 ~i~TGi~~LD~~Lg~GGlp-------~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~----~~~~--~a~ 101 (321)
T TIGR02012 35 TISTGSLSLDLALGVGGLP-------RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA----LDPV--YAR 101 (321)
T ss_pred eecCCCHHHHHHhcCCCCc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch----hHHH--HHH
Confidence 45566678888887 5432 46899999999999999999999999999999999998621 1111 122
Q ss_pred ccccc---eecCCCccChHHHHHhhHHH-HHhcCCcEEEEeCCccc
Q 012680 123 QVGVP---VYTAGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRL 164 (458)
Q Consensus 123 ~~gv~---v~~~~~~~~~~~i~~~~l~~-~~~~~~DvVIIDtpg~l 164 (458)
..|++ ++...+ ....+.+ ..+.. ++...+++||||+...+
T Consensus 102 ~lGvd~~~l~v~~p-~~~eq~l-~~~~~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 102 KLGVDIDNLLVSQP-DTGEQAL-EIAETLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HcCCCHHHeEEecC-CCHHHHH-HHHHHHhhccCCcEEEEcchhhh
Confidence 22322 111111 1122222 22222 23467999999997654
No 153
>PRK13351 elongation factor G; Reviewed
Probab=98.21 E-value=6.5e-06 Score=91.57 Aligned_cols=146 Identities=20% Similarity=0.185 Sum_probs=72.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..+.|+++|+.|+||||++..|......-.+ ..-++...+-.+... .....++.+.... ..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~-~~~v~~~~~~~d~~~----~e~~r~~ti~~~~-------------~~~ 68 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHK-MGEVEDGTTVTDWMP----QEQERGITIESAA-------------TSC 68 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccc-cccccCCcccCCCCH----HHHhcCCCcccce-------------EEE
Confidence 4578999999999999999999754321110 000110000000000 0111122111110 011
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhh-HhHhhhhhe--eeeeeceeeeecccCCCC-
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALVTTFN--IEIGITGAILTKLDGDSR- 224 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~-~~~~~~~~~--~~~~i~GvIlnk~D~~~~- 224 (458)
.+.++.+.|+||||..... .+...... ..|.+++|+|+..+.. .....+.+. ...++ -+|+||+|....
T Consensus 69 ~~~~~~i~liDtPG~~df~----~~~~~~l~--~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-iiviNK~D~~~~~ 141 (687)
T PRK13351 69 DWDNHRINLIDTPGHIDFT----GEVERSLR--VLDGAVVVFDAVTGVQPQTETVWRQADRYGIPR-LIFINKMDRVGAD 141 (687)
T ss_pred EECCEEEEEEECCCcHHHH----HHHHHHHH--hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEECCCCCCCC
Confidence 2357889999999975432 22222222 2488999999965421 112222221 13333 379999996532
Q ss_pred -CcceeeeeeccCCce
Q 012680 225 -GGAALSVKEVSGKPI 239 (458)
Q Consensus 225 -~g~~~~i~~~~g~pI 239 (458)
...+.++...++.++
T Consensus 142 ~~~~~~~i~~~l~~~~ 157 (687)
T PRK13351 142 LFKVLEDIEERFGKRP 157 (687)
T ss_pred HHHHHHHHHHHHCCCe
Confidence 223344555555543
No 154
>PRK00089 era GTPase Era; Reviewed
Probab=98.21 E-value=8.5e-06 Score=81.02 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=66.1
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
-+|++.|.+||||||+...|. |.++..+...+.... ....+ ++. .
T Consensus 6 g~V~iiG~pn~GKSTLin~L~------g~~~~~vs~~~~tt~--------~~i~~--i~~-------------------~ 50 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTR--------HRIRG--IVT-------------------E 50 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHh------CCceeecCCCCCccc--------ccEEE--EEE-------------------c
Confidence 478999999999999998886 777766554322110 00001 111 1
Q ss_pred cCCcEEEEeCCccccccHHHHHHHH--HHHhhcCcceEEEEEeccc--hhhHhHhhhhhee-eeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNI-EIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~--~l~~~~~~~~vllVvda~~--g~~~~~~~~~~~~-~~~i~GvIlnk~D~~ 222 (458)
.+++++++||||.......+...+. .......+|.+++|+|+.. ............. ..+ .-+|+||+|..
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcCC
Confidence 3478999999997653322211111 1122334688899999854 2222222222221 122 34889999975
No 155
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.20 E-value=1e-05 Score=71.68 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=62.8
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...|+++|.+|+||||++..|. |.++..+..++... .......+ .
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~------~~~~~~~~~~~~~~----------~~~~~~~~-------------------~ 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTT----------RNRIRGIY-------------------T 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCceEeccCCCCce----------eceEEEEE-------------------E
Confidence 3579999999999999999886 55655443321100 00000000 1
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHH--HHHhhcCcceEEEEEeccch--hhHhHhhhhheeeeeeceeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~--~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
..+++++++||||...........+. ........+.+++|+|+... +........+...-....+|+||+|..
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 13578999999997643211111110 11122345788999998543 222222222211111234899999975
No 156
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.19 E-value=6.2e-06 Score=87.99 Aligned_cols=109 Identities=20% Similarity=0.189 Sum_probs=75.0
Q ss_pred HHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcccc
Q 012680 45 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV 124 (458)
Q Consensus 45 ~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~ 124 (458)
++.-.++|.+++|++.. +..+++++|.+|+||||++..+++..+++|.+|+++.++-.. +++...+...
T Consensus 245 ~~tGi~~lD~~lgGG~~-------~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~----~~i~~~~~~l 313 (484)
T TIGR02655 245 VSSGVVRLDEMCGGGFF-------KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESR----AQLLRNAYSW 313 (484)
T ss_pred cCCChHhHHHHhcCCcc-------CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCH----HHHHHHHHHc
Confidence 45556788888887643 568999999999999999999999999999999999988433 2333223333
Q ss_pred cc-----------ceecCC-CccChHHHHHhhHHHHHhcCCcEEEEeCCccc
Q 012680 125 GV-----------PVYTAG-TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 164 (458)
Q Consensus 125 gv-----------~v~~~~-~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l 164 (458)
|+ .++... ....+.+.+...++.+...++++|+||+-..+
T Consensus 314 g~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 314 GIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred CCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 32 222211 22344555555566665568999999985543
No 157
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.17 E-value=1e-05 Score=74.53 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=34.4
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
++++.|.+|+|||+++..++....+.|.+|++++++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 36788999999999999999999999999999998753
No 158
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.17 E-value=1e-05 Score=77.41 Aligned_cols=108 Identities=21% Similarity=0.312 Sum_probs=65.7
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccccCchhhhHHhhhc-------
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILG------- 121 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~rp~a~~~l~~~~------- 121 (458)
+.|.++++++.. ++.+++++|.+|+|||+++..+++..+++ |.+|+++..+.-.....+++..++
T Consensus 6 ~~LD~~l~GGip-------~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~ 78 (226)
T PF06745_consen 6 PGLDELLGGGIP-------KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYE 78 (226)
T ss_dssp TTHHHHTTTSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHH
T ss_pred hhHHHhhcCCCC-------CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHh
Confidence 457778865543 57899999999999999999999988888 999999998743322222222111
Q ss_pred cccccceecCCC------ccChHHHHHhhHHHHHhcCCcEEEEeCCccc
Q 012680 122 EQVGVPVYTAGT------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 164 (458)
Q Consensus 122 ~~~gv~v~~~~~------~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l 164 (458)
..-.+.++.... ..++..+.......+...++++|+||+-..+
T Consensus 79 ~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 79 DSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp HTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred hcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 111233332222 1234444444334444456799999985544
No 159
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.16 E-value=6.1e-06 Score=72.98 Aligned_cols=58 Identities=31% Similarity=0.514 Sum_probs=48.1
Q ss_pred HhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh
Q 012680 47 IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI 114 (458)
Q Consensus 47 ~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~ 114 (458)
+.+++..++++ ++.-+|+++|.+||||||+|++|..+|.++|+-...+|+|-.|.+..
T Consensus 18 v~k~eRq~l~~----------qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN 75 (207)
T KOG0635|consen 18 VTKEERQKLLK----------QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN 75 (207)
T ss_pred ccHHHHHHHhc----------CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc
Confidence 44555555554 35679999999999999999999999999999999999998776543
No 160
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.16 E-value=1.5e-05 Score=82.12 Aligned_cols=105 Identities=25% Similarity=0.419 Sum_probs=67.7
Q ss_pred hHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccc
Q 012680 44 LVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ 123 (458)
Q Consensus 44 ~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~ 123 (458)
.+..-..+|.++||++.. +..++++.|.+|+||||++..+|..+++.|.+|++++++- ..+++......
T Consensus 63 ri~TGi~eLD~vLgGGi~-------~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE----s~~qi~~Ra~r 131 (372)
T cd01121 63 RIPTGIEELDRVLGGGLV-------PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE----SPEQIKLRADR 131 (372)
T ss_pred ccccCCHHHHHhhcCCcc-------CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc----CHHHHHHHHHH
Confidence 355566788888886542 4579999999999999999999999999999999998863 23344333333
Q ss_pred cccceec--CCCccChHHHHHhhHHHHHhcCCcEEEEeCCcc
Q 012680 124 VGVPVYT--AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 163 (458)
Q Consensus 124 ~gv~v~~--~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~ 163 (458)
.++..-. .....+ .+ ..++.+...++++||||.-..
T Consensus 132 lg~~~~~l~l~~e~~-le---~I~~~i~~~~~~lVVIDSIq~ 169 (372)
T cd01121 132 LGISTENLYLLAETN-LE---DILASIEELKPDLVIIDSIQT 169 (372)
T ss_pred cCCCcccEEEEccCc-HH---HHHHHHHhcCCcEEEEcchHH
Confidence 3322100 001111 12 223333345799999998543
No 161
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.15 E-value=2.1e-06 Score=92.25 Aligned_cols=133 Identities=21% Similarity=0.239 Sum_probs=70.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc-CchhhhHHhhhccccccceecCCCccChHHHHHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~-rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
+.+.|+++|++|+||||++.+|.++...-. +..-++.+.. +....|. .......|+.+..... .
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~-~~g~v~~~g~~~~t~~D~-~~~E~~rgisi~~~~~-------------~ 74 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQ-TAGAVKGRGSQRHAKSDW-MEMEKQRGISITTSVM-------------Q 74 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCcc-ccceeccccccccccCCC-CHHHHhcCCcEEEEEE-------------E
Confidence 567999999999999999999976432211 1112221110 1111111 1122223444322211 1
Q ss_pred HHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeee-ceeeeecccCC
Q 012680 148 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD 222 (458)
Q Consensus 148 ~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlnk~D~~ 222 (458)
+.+.++.+.|+||||...+.......+ ...|.+++|+|+..+ +.....+.......++ .-+++||+|..
T Consensus 75 ~~~~~~~inliDTPG~~df~~~~~~~l------~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 75 FPYRDCLVNLLDTPGHEDFSEDTYRTL------TAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred EeeCCeEEEEEECCChhhHHHHHHHHH------HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 123578999999999753322222221 235899999999654 2222223222222222 34799999975
No 162
>PHA02542 41 41 helicase; Provisional
Probab=98.14 E-value=8.1e-05 Score=78.99 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=43.4
Q ss_pred HHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 49 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 49 ~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
...|.++++++. .+...++++|.||+||||++.++|...++.|++|++++++...
T Consensus 176 ~~~LD~~t~gGl-------~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~ 230 (473)
T PHA02542 176 LEILNKITKGGA-------ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAE 230 (473)
T ss_pred cHHHHHhccCCC-------CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCH
Confidence 455666662221 2456889999999999999999999988889999999998644
No 163
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.13 E-value=3.3e-05 Score=74.67 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=44.1
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
..|.++++++.. +..+++++|.+|+||||++..+++...++|.+|++++++-
T Consensus 8 ~~LD~~l~GG~~-------~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 8 PGMDEILHGGIP-------ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred HhHHHHhcCCCc-------CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 567777776542 4689999999999999999999988778899999999875
No 164
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.12 E-value=2.2e-05 Score=79.07 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=48.5
Q ss_pred hhHHHhHHHHHHhhc-cceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 43 QLVKIVRDELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 43 ~~~~~v~~el~~llg-~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
..+..-...|..+|| ++.. +.+++.+.|++|+||||+|..++...++.|.+|++||+.
T Consensus 34 ~~isTGi~~LD~~Lg~GGlp-------~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 34 EVIPTGSLSLDIALGIGGYP-------KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred ceecCCCHHHHHHhcCCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 345566678888888 5532 467999999999999999999999999999999999985
No 165
>PRK12740 elongation factor G; Reviewed
Probab=98.10 E-value=4.3e-06 Score=92.70 Aligned_cols=140 Identities=19% Similarity=0.259 Sum_probs=69.0
Q ss_pred eccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcE
Q 012680 76 AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDV 155 (458)
Q Consensus 76 ~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~Dv 155 (458)
+|++|+||||++.+|++... ..+...+.|.. ....+.+ ......|+.+-.. ...+.+.++++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g---~i~~~~~~~~~-~~~~d~~-~~e~~rgiTi~~~-------------~~~~~~~~~~i 62 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTG---AIHRIGEVEDG-TTTMDFM-PEERERGISITSA-------------ATTCEWKGHKI 62 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcC---CCccCccccCC-cccCCCC-hHHHhcCCCeeec-------------eEEEEECCEEE
Confidence 48999999999999976633 21111111110 0111111 1112233332211 11123467999
Q ss_pred EEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhh-HhHhhhhheeeeee-ceeeeecccCCCCC--cceeee
Q 012680 156 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALVTTFNIEIGI-TGAILTKLDGDSRG--GAALSV 231 (458)
Q Consensus 156 VIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~-~~~~~~~~~~~~~i-~GvIlnk~D~~~~~--g~~~~i 231 (458)
+||||||...... +.... ...+|.+++|+|+..+.. .......+....++ .-+|+||+|..... .....+
T Consensus 63 ~liDtPG~~~~~~----~~~~~--l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l 136 (668)
T PRK12740 63 NLIDTPGHVDFTG----EVERA--LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQL 136 (668)
T ss_pred EEEECCCcHHHHH----HHHHH--HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHH
Confidence 9999999754222 22111 123589999999965421 11112222212222 23799999975322 223344
Q ss_pred eeccCCce
Q 012680 232 KEVSGKPI 239 (458)
Q Consensus 232 ~~~~g~pI 239 (458)
.+.++.|+
T Consensus 137 ~~~l~~~~ 144 (668)
T PRK12740 137 QEKLGAPV 144 (668)
T ss_pred HHHHCCCc
Confidence 45556554
No 166
>PRK09354 recA recombinase A; Provisional
Probab=98.10 E-value=1.1e-05 Score=81.92 Aligned_cols=105 Identities=19% Similarity=0.329 Sum_probs=68.0
Q ss_pred hHHHhHHHHHHhhc-cceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc-cCchhhhHHhhhc
Q 012680 44 LVKIVRDELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILG 121 (458)
Q Consensus 44 ~~~~v~~el~~llg-~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~-~rp~a~~~l~~~~ 121 (458)
.+..-...|..+|| ++.. +.+++.+.|++|+||||+|..++....+.|.+|++||+.- ..|. +.
T Consensus 40 ~isTGi~~LD~~LG~GGip-------~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~-------~a 105 (349)
T PRK09354 40 VISTGSLALDIALGIGGLP-------RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-------YA 105 (349)
T ss_pred eecCCcHHHHHHhcCCCCc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH-------HH
Confidence 45566778888888 6532 4689999999999999999999999999999999999862 1122 12
Q ss_pred cccccce---ecCCCccChHHHHHhhHHH-HHhcCCcEEEEeCCccc
Q 012680 122 EQVGVPV---YTAGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRL 164 (458)
Q Consensus 122 ~~~gv~v---~~~~~~~~~~~i~~~~l~~-~~~~~~DvVIIDtpg~l 164 (458)
...|+++ +... +....+.+ ..+.. ++...+++||||+...+
T Consensus 106 ~~lGvdld~lli~q-p~~~Eq~l-~i~~~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 106 KKLGVDIDNLLVSQ-PDTGEQAL-EIADTLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHcCCCHHHeEEec-CCCHHHHH-HHHHHHhhcCCCCEEEEeChhhh
Confidence 2223321 1111 11222222 22222 23467999999996654
No 167
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.07 E-value=8.5e-06 Score=80.96 Aligned_cols=101 Identities=25% Similarity=0.389 Sum_probs=75.1
Q ss_pred HHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceee-eE----e-ccCCCeEEEeec
Q 012680 4 IRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LV----F-AKSRPTVILLAG 77 (458)
Q Consensus 4 i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~-~~----~-~~~~p~iI~i~G 77 (458)
+.+.|..+++++.++-++...|.+....++. -....+.+.+++++.|.+..+..... +. + ....|.+|+++|
T Consensus 22 L~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~--~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G 99 (301)
T PRK04220 22 LARSLTAAGMKPSIAYEIASEIEEELKKEGI--KEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGG 99 (301)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHcCC--EEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 5688999999998888888888877666542 23345678888888888877654221 11 1 124688999999
Q ss_pred cccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 78 LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 78 ~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.+||||||+|.+||..| |.. .++.+|..|
T Consensus 100 ~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 100 ASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 99999999999999888 444 467899766
No 168
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.06 E-value=2.5e-05 Score=82.39 Aligned_cols=104 Identities=25% Similarity=0.482 Sum_probs=68.2
Q ss_pred HHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcccc
Q 012680 45 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV 124 (458)
Q Consensus 45 ~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~ 124 (458)
+..-..+|.+++|++.. +..++++.|.+|+||||++..++..++++|.+|+++++.- ..+++.......
T Consensus 62 i~TGi~~LD~~LgGGi~-------~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee----s~~qi~~ra~rl 130 (446)
T PRK11823 62 ISTGIGELDRVLGGGLV-------PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE----SASQIKLRAERL 130 (446)
T ss_pred ccCCcHHHHHHhcCCcc-------CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc----cHHHHHHHHHHc
Confidence 55566788888886543 4579999999999999999999999998899999999863 233443323333
Q ss_pred ccc---eecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCccc
Q 012680 125 GVP---VYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 164 (458)
Q Consensus 125 gv~---v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l 164 (458)
+.+ ++.. ...+ . .+.+..+...++++||||....+
T Consensus 131 g~~~~~l~~~-~e~~-l---~~i~~~i~~~~~~lVVIDSIq~l 168 (446)
T PRK11823 131 GLPSDNLYLL-AETN-L---EAILATIEEEKPDLVVIDSIQTM 168 (446)
T ss_pred CCChhcEEEe-CCCC-H---HHHHHHHHhhCCCEEEEechhhh
Confidence 321 1111 1111 1 22233334457899999986543
No 169
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.06 E-value=1.8e-05 Score=72.36 Aligned_cols=124 Identities=17% Similarity=0.179 Sum_probs=63.9
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 152 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~ 152 (458)
|+++|.+|+||||+...|.......++...+.+........ +. ..++...... ..+....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~-------------~~~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKE-ER------ERGITIKSGV-------------ATFEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHH-HH------HcCCCeecce-------------EEEeeCC
Confidence 78889999999999999986654444444433322111110 00 1111111000 0001136
Q ss_pred CcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh--hHhHhhhhhee-eeeeceeeeecccCCC
Q 012680 153 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGDS 223 (458)
Q Consensus 153 ~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~--~~~~~~~~~~~-~~~i~GvIlnk~D~~~ 223 (458)
++++|+||||...........+ ..++.+++|+|+..+. ...+....... ..+ .-+++||+|...
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~~------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~ 128 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRGL------SVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVG 128 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHH------HhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCcc
Confidence 7899999999654322211111 1358899999985432 11122221111 122 348899999753
No 170
>PRK04296 thymidine kinase; Provisional
Probab=98.04 E-value=1.7e-05 Score=74.12 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=54.5
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeec--cccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG--DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~--D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.+++++|++|+||||.+..++..+...|++|+++.. |. +... .......|+++... ......+.+.. +..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~-~~~~----~~i~~~lg~~~~~~-~~~~~~~~~~~-~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD-RYGE----GKVVSRIGLSREAI-PVSSDTDIFEL-IEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc-cccC----CcEecCCCCcccce-EeCChHHHHHH-HHh-
Confidence 588999999999999999999999999999999843 43 2111 11223334332110 01122222222 222
Q ss_pred HhcCCcEEEEeCCcccc
Q 012680 149 KKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~ 165 (458)
...++|+|+||-...+.
T Consensus 75 ~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred hCCCCCEEEEEccccCC
Confidence 33579999999997764
No 171
>PRK04328 hypothetical protein; Provisional
Probab=98.03 E-value=2.9e-05 Score=75.71 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=44.2
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+.|.++|+++.. +..+++++|.+|+|||+++..+++...++|.++++++++-
T Consensus 10 ~~LD~lL~GGip-------~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 10 PGMDEILYGGIP-------ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred hhHHHHhcCCCc-------CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 467788876532 4679999999999999999999988888899999999875
No 172
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.03 E-value=1.8e-05 Score=81.75 Aligned_cols=117 Identities=20% Similarity=0.350 Sum_probs=73.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
.+|+++|.|.|||||+-..|+ |.++.+|+-- |+... .. +|. .+.|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~D~---pGvTR-----Dr-----~y~----------------~~~~ 48 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVSDT---PGVTR-----DR-----IYG----------------DAEW 48 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCeeeEeecC---CCCcc-----CC-----ccc----------------eeEE
Confidence 479999999999999999998 8888877621 11100 00 111 1234
Q ss_pred cCCcEEEEeCCcccccc-HHHHHHH--HHHHhhcCcceEEEEEeccch--hhHhHhhhhheeeeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQID-KAMMDEL--KDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d-~~l~~el--~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
.+..+.+|||+|....+ ..+...+ +....+-.+|-++||||+..| ......+..+...-...-+|+||+|+.
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 57789999999987654 3344333 223333456899999999665 222233333332223345899999986
No 173
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=80.77 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=83.0
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhH--HhhhccccccceecCCC-----ccChHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ--LVILGEQVGVPVYTAGT-----EVKPSQIAKQ 143 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~--l~~~~~~~gv~v~~~~~-----~~~~~~i~~~ 143 (458)
.+.+++|-=||||||+..+|..... |+|+++|-.+. ..-.+|. +.. .....+.-++.|+ ..+-...+.+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEf-GEvgID~~~~l~-~~~e~~~El~nGCICCT~r~dl~~~~~~ 77 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEF-GEVGIDGGALLS-DTGEEVVELTNGCICCTVRDDLLPALER 77 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecC-ccccccCCCccc-cCCccEEEeCCceEEEeccchhHHHHHH
Confidence 3788999999999999999976655 99999887763 3223331 111 1111111122222 1122333333
Q ss_pred hHHHHHhcCCcEEEEeCCccccccHHHHHHHH---HHHhhcCcceEEEEEeccchhhHhH-hhhhheeeeee-ceeeeec
Q 012680 144 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK---DVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGI-TGAILTK 218 (458)
Q Consensus 144 ~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~---~l~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i-~GvIlnk 218 (458)
... ...++|+|||+|.|.... ...+..+. .+...+.-+.++-|||+........ ....+..++.. .-+|+||
T Consensus 78 L~~--~~~~~D~ivIEtTGlA~P-~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK 154 (323)
T COG0523 78 LLR--RRDRPDRLVIETTGLADP-APVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNK 154 (323)
T ss_pred HHh--ccCCCCEEEEeCCCCCCC-HHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEec
Confidence 333 235699999999997642 22232221 2333344477899999954322221 22333333333 3389999
Q ss_pred ccCCCCC
Q 012680 219 LDGDSRG 225 (458)
Q Consensus 219 ~D~~~~~ 225 (458)
.|.-...
T Consensus 155 ~Dlv~~~ 161 (323)
T COG0523 155 TDLVDAE 161 (323)
T ss_pred ccCCCHH
Confidence 9976544
No 174
>PRK15494 era GTPase Era; Provisional
Probab=98.02 E-value=6.7e-06 Score=83.78 Aligned_cols=117 Identities=18% Similarity=0.300 Sum_probs=61.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...|+++|.+|+||||+...|. |.++..+..- +.. +.....+ ++.
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~------~~k~~ivs~k---~~t-----Tr~~~~~--~~~------------------- 96 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRII------GEKLSIVTPK---VQT-----TRSIITG--IIT------------------- 96 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHh------CCceeeccCC---CCC-----ccCcEEE--EEE-------------------
Confidence 3478899999999999998885 5555433321 111 0001111 111
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHH--HHHhhcCcceEEEEEeccch-hhHh-Hhhhhhee-eeeeceeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTG-QEAA-ALVTTFNI-EIGITGAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~--~l~~~~~~~~vllVvda~~g-~~~~-~~~~~~~~-~~~i~GvIlnk~D~~ 222 (458)
..++.++|+||||.......+...+. .+.....+|.+++|+|+..+ .+.. ..+..... ...+ -+|+||+|..
T Consensus 97 ~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~-IlViNKiDl~ 173 (339)
T PRK15494 97 LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVP-IFLLNKIDIE 173 (339)
T ss_pred eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEEhhcCc
Confidence 13567999999997532211211111 11123346888999998543 1111 11211111 1222 3789999974
No 175
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.99 E-value=4.7e-05 Score=68.41 Aligned_cols=37 Identities=32% Similarity=0.429 Sum_probs=32.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
+.-|.++|.|||||||++.+++-.|...|++|.=+-+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 4568999999999999999999999999999874443
No 176
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.99 E-value=4.2e-05 Score=80.89 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=67.0
Q ss_pred HHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcccc
Q 012680 45 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV 124 (458)
Q Consensus 45 ~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~ 124 (458)
++.-..+|.+++|++.. +..++++.|.+|+||||++..++..+++.|.+|++++++-. .+|+...+...
T Consensus 76 i~TGi~~LD~vLgGGi~-------~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs----~~qi~~ra~rl 144 (454)
T TIGR00416 76 FSSGFGELDRVLGGGIV-------PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES----LQQIKMRAIRL 144 (454)
T ss_pred cccCcHHHHHHhcCCcc-------CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC----HHHHHHHHHHc
Confidence 44556788888876542 46799999999999999999999999998999999998632 33443333333
Q ss_pred ccceec--CCCccChHHHHHhhHHHHHhcCCcEEEEeCCcc
Q 012680 125 GVPVYT--AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 163 (458)
Q Consensus 125 gv~v~~--~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~ 163 (458)
++..-. .-...+. +.+ ...+...++++||||.-..
T Consensus 145 g~~~~~l~~~~e~~~-~~I---~~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 145 GLPEPNLYVLSETNW-EQI---CANIEEENPQACVIDSIQT 181 (454)
T ss_pred CCChHHeEEcCCCCH-HHH---HHHHHhcCCcEEEEecchh
Confidence 322100 0011122 222 2333445799999997443
No 177
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.98 E-value=1.4e-05 Score=72.23 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=34.1
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
|+.++|..||||||++.+|+..|..+|++|.++..|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 5788999999999999999999999999999998764
No 178
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.97 E-value=2e-05 Score=74.67 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=35.1
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.+++|+|||||||-|..+...|...|++|.+|..||..
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN 42 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN 42 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc
Confidence 46789999999999999999999999999999999854
No 179
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.97 E-value=3.8e-05 Score=78.27 Aligned_cols=120 Identities=17% Similarity=0.278 Sum_probs=69.5
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccc------cccceecCCC-ccChHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ------VGVPVYTAGT-EVKPSQIAKQ 143 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~------~gv~v~~~~~-~~~~~~i~~~ 143 (458)
.+.+++|--|+||||+..+|... ..|.+++++-.|.... .+|........ .++.-+..++ ..+-.+-+..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~-~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~ 81 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDL-GIDGEILKACGIEGCSEENIVELANGCICCTVADDFIP 81 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccc-cchHHHHhccccccCCcceEEEeCCCCccccCcHHHHH
Confidence 48899999999999999999763 3689999999885543 23322111100 0111122222 1111223344
Q ss_pred hHHHHH--hcCCcEEEEeCCccccccHHHHHHHH--HHHhhcCcceEEEEEeccc
Q 012680 144 GLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMT 194 (458)
Q Consensus 144 ~l~~~~--~~~~DvVIIDtpg~l~~d~~l~~el~--~l~~~~~~~~vllVvda~~ 194 (458)
++..+. ...+|+|||+|.|... ...++..+. .+...+.-+.++.|||+..
T Consensus 82 ~l~~l~~~~~~~d~IvIEtsG~a~-P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 82 TMTKLLARRQRPDHILIETSGLAL-PKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCC-HHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 444443 2469999999999754 233333331 2222334477899999953
No 180
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=6.8e-06 Score=86.76 Aligned_cols=222 Identities=15% Similarity=0.150 Sum_probs=125.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+-|.|-++.+--+||||++....+|-.... .+-+.|.. ++.-+...+....|+.+-.+.. .+
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~---~i~ev~~~--~a~md~m~~er~rgITiqSAAt-------------~~ 99 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIK---HIGEVRGG--GATMDSMELERQRGITIQSAAT-------------YF 99 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceee---eccccccC--ceeeehHHHHHhcCceeeecee-------------ee
Confidence 467899999999999999998876654321 11111111 2222223344556666544322 22
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeeece-eeeecccCC--CC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITG-AILTKLDGD--SR 224 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~G-vIlnk~D~~--~~ 224 (458)
.|.+|.+.||||||...+.-+....|+.+ |..++|+++..| +.....++......++.- .++||+|.- ..
T Consensus 100 ~w~~~~iNiIDTPGHvDFT~EVeRALrVl------DGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 100 TWRDYRINIIDTPGHVDFTFEVERALRVL------DGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASP 173 (721)
T ss_pred eeccceeEEecCCCceeEEEEehhhhhhc------cCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCCh
Confidence 35689999999999987655444555443 889999999666 555666666655555533 688999953 22
Q ss_pred Ccceeeeeecc-------CCcee----EeecCCccccCC-CCCcchh--hhhhhcccchhHHHHHHHHHHhH---HhHHH
Q 012680 225 GGAALSVKEVS-------GKPIK----LVGRGERMEDLE-PFYPDRM--AGRILGMGDVLSFVEKAQEVMQQ---EDAEE 287 (458)
Q Consensus 225 ~g~~~~i~~~~-------g~pI~----fig~g~~v~dl~-~f~p~~~--~sr~lG~~dv~~l~e~~~e~~~e---~~~~~ 287 (458)
...+..+...+ .+|+. |-|...-+.... .|+++.. +..-.-+++...+.+..++.+.| +-++.
T Consensus 174 ~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~ 253 (721)
T KOG0465|consen 174 FRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDET 253 (721)
T ss_pred HHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 22222222222 23332 222222111100 1111111 11112244566666666666643 34556
Q ss_pred HHHHHhhc-ccChhHHHHHHHHHHhhcc
Q 012680 288 MQKKIMSA-NFDFNDFLKQTRTVARMGS 314 (458)
Q Consensus 288 ~~~k~~~~-~~~~edl~~~l~~~~~~g~ 314 (458)
+.+.++++ +++.+++...++...-.+.
T Consensus 254 l~e~fLee~~ps~~~l~~aIRr~Ti~r~ 281 (721)
T KOG0465|consen 254 LAEMFLEEEEPSAQQLKAAIRRATIKRS 281 (721)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHhhcc
Confidence 66666655 8999999998887765544
No 181
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.95 E-value=1.9e-05 Score=88.22 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=73.4
Q ss_pred hHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCc----eEEeeccccCchhhhHHhhhccc
Q 012680 48 VRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS----CMLVAGDVYRPAAIDQLVILGEQ 123 (458)
Q Consensus 48 v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~k----VllVd~D~~rp~a~~~l~~~~~~ 123 (458)
..+.+.+++... ...+.|+++|+.|+||||++.+|.+....-.+. ..+.|.+ +. ...
T Consensus 5 ~~~~~~~~~~~~--------~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~---~~--------e~~ 65 (720)
T TIGR00490 5 MIDKIKELMWKP--------KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFD---EQ--------EQE 65 (720)
T ss_pred HHHHHHHHhhCc--------ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCC---HH--------HHh
Confidence 345556665521 246799999999999999999997643211110 1111111 00 001
Q ss_pred cccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHh
Q 012680 124 VGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL 201 (458)
Q Consensus 124 ~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~ 201 (458)
.|+.+-...... ...+.+.+|+++||||||...+.......+ ...|.+++|+|+..+ ......
T Consensus 66 rg~Ti~~~~~~~---------~~~~~~~~~~i~liDTPG~~~f~~~~~~al------~~aD~~llVvda~~g~~~~t~~~ 130 (720)
T TIGR00490 66 RGITINAANVSM---------VHEYEGNEYLINLIDTPGHVDFGGDVTRAM------RAVDGAIVVVCAVEGVMPQTETV 130 (720)
T ss_pred hcchhhccccee---------EEeecCCceEEEEEeCCCccccHHHHHHHH------HhcCEEEEEEecCCCCCccHHHH
Confidence 111111000000 001134678999999999865433222222 234899999999654 222222
Q ss_pred hhh-heeeeeeceeeeecccCC
Q 012680 202 VTT-FNIEIGITGAILTKLDGD 222 (458)
Q Consensus 202 ~~~-~~~~~~i~GvIlnk~D~~ 222 (458)
... .....++. +++||+|..
T Consensus 131 ~~~~~~~~~p~i-vviNKiD~~ 151 (720)
T TIGR00490 131 LRQALKENVKPV-LFINKVDRL 151 (720)
T ss_pred HHHHHHcCCCEE-EEEEChhcc
Confidence 221 12334443 899999975
No 182
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.95 E-value=7.7e-05 Score=73.58 Aligned_cols=109 Identities=21% Similarity=0.272 Sum_probs=72.9
Q ss_pred hHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc-cCchhhhHHhhhcccccc
Q 012680 48 VRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGV 126 (458)
Q Consensus 48 v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~-~rp~a~~~l~~~~~~~gv 126 (458)
-.-.|.++||++.. ..+|+=+.|+.||||||+|..++....+.|.++.+||+.- ++|..+.++.... ..++
T Consensus 45 Gs~~LD~~LGGGl~-------~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-~d~l 116 (279)
T COG0468 45 GSLALDEALGGGLP-------RGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-LDNL 116 (279)
T ss_pred cchhHHHHhcCCcc-------cceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh-hcce
Confidence 34456677775532 4689999999999999999999999999999999999864 7888777765331 2234
Q ss_pred ceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCcccc
Q 012680 127 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 127 ~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~ 165 (458)
.+..........+++........ +.+|+|+||+-..+.
T Consensus 117 ~v~~~~~~e~q~~i~~~~~~~~~-~~i~LvVVDSvaa~~ 154 (279)
T COG0468 117 LVSQPDTGEQQLEIAEKLARSGA-EKIDLLVVDSVAALV 154 (279)
T ss_pred eEecCCCHHHHHHHHHHHHHhcc-CCCCEEEEecCcccc
Confidence 44333222222233333333322 259999999966543
No 183
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.94 E-value=8e-06 Score=88.97 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=67.9
Q ss_pred eEEEeeccccccchhHhhHHHHHHHh--cCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~--~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
|.|+++|+.++||||++.+|.+.... +...|- + ...|.. ......|+.+...... +
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~--~------~~~D~~-~~ErerGiTI~~~~~~-------------v 59 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVA--E------RVMDSN-DLERERGITILAKNTA-------------I 59 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccce--e------ecccCc-hHHHhCCccEEeeeEE-------------E
Confidence 57999999999999999999764321 111111 0 011111 1122345544432111 1
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhh--eeeeeeceeeeecccCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTF--NIEIGITGAILTKLDGD 222 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~--~~~~~i~GvIlnk~D~~ 222 (458)
.+.++.+.||||||...+ ..++..... .+|.+++|+|+..+ +......+.. ...+++ -|++||+|..
T Consensus 60 ~~~~~kinlIDTPGh~DF----~~ev~~~l~--~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~~ 129 (594)
T TIGR01394 60 RYNGTKINIVDTPGHADF----GGEVERVLG--MVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDRP 129 (594)
T ss_pred EECCEEEEEEECCCHHHH----HHHHHHHHH--hCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCCC
Confidence 245788999999997533 233333322 34899999999654 1111112211 223333 4899999974
No 184
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.94 E-value=2.5e-05 Score=73.88 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=36.9
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh-hHhHhhhhheeeeee--ceeeeecccCCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGI--TGAILTKLDGDS 223 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~-~~~~~~~~~~~~~~i--~GvIlnk~D~~~ 223 (458)
.+..+.|+||||...+ ..++. .....++.+++|+|+..+. ........+....++ .-+|+||+|...
T Consensus 75 ~~~~~~liDTpG~~~~----~~~~~--~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 75 PKRKFIIADTPGHEQY----TRNMV--TGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred CCceEEEEECCcHHHH----HHHHH--HhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 5678999999996432 12221 1223468899999996541 111111222222222 225789999753
No 185
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.94 E-value=4.1e-05 Score=72.94 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=42.4
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcC------CceEEeeccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQG------KSCMLVAGDV 108 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G------~kVllVd~D~ 108 (458)
.+|.++++++.. ...++.++|.+|+|||+++..+|......| .+|++++++-
T Consensus 6 ~~lD~~l~GG~~-------~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 6 KALDELLGGGIP-------TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred HHHHHHhCCCCc-------CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 567777764432 457999999999999999999998887777 8999999863
No 186
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.94 E-value=8.1e-05 Score=73.05 Aligned_cols=40 Identities=30% Similarity=0.297 Sum_probs=36.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~ 108 (458)
+..+++++|.+|+||||++..++..++.. |++|++++++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 45689999999999999999999998877 99999999875
No 187
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.92 E-value=3.1e-05 Score=74.21 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=38.3
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh--hHhHhhhhh-eeeeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~--~~~~~~~~~-~~~~~i~GvIlnk~D~~ 222 (458)
.++.+.|+||||...........+ ..+|.+++|+|+..+. ......+.. ...++ .-+++||+|..
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l------~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 138 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAAL------RLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRL 138 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHH------HhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcc
Confidence 367899999999875433222222 2358899999996552 222222221 22333 34889999963
No 188
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.92 E-value=9.1e-05 Score=74.59 Aligned_cols=143 Identities=20% Similarity=0.225 Sum_probs=79.9
Q ss_pred cccchHHHHHHHHHHhhhhhcccccccc-----CccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchh
Q 012680 11 ADVSLPVVRRFVQAVSEQAVGVGLIRGV-----RPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTT 85 (458)
Q Consensus 11 adv~~~vv~~~~~~v~~~~~~~~~~~~~-----~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT 85 (458)
.+++...|.++++.+...... ....+. ......+..-..+|.++||++.. ...++.++|.+|+|||+
T Consensus 40 ~gls~~~~~~i~~~~~~~~~~-~~~ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~-------~G~iteI~G~~GsGKTq 111 (313)
T TIGR02238 40 KGLSEAKVDKIKEAASKIINP-GFITAFEISQKRKKVLKITTGSQALDGILGGGIE-------SMSITEVFGEFRCGKTQ 111 (313)
T ss_pred cCCCHHHHHHHHHHHHhhhcc-cCccHHHHHHhhccCceeCCCCHHHHHHhCCCCc-------CCeEEEEECCCCCCcCH
Confidence 677777788877766654321 111000 00001233445677788876543 46799999999999999
Q ss_pred HhhHHHHHHH------hcCCceEEeeccc-cCchhhhHHhhhcccccc---------ceecCCCccChHHHHHhhHHHHH
Q 012680 86 VSAKLANYLK------KQGKSCMLVAGDV-YRPAAIDQLVILGEQVGV---------PVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 86 ~a~~LA~~L~------~~G~kVllVd~D~-~rp~a~~~l~~~~~~~gv---------~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
+|..|+.... ..|.+|++||+.- |+|.-+.+. ++..++ .+........-.+.+......+.
T Consensus 112 l~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~---a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~ 188 (313)
T TIGR02238 112 LSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAI---AERFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFS 188 (313)
T ss_pred HHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHH---HHHcCCChHHhcCcEEEecCCCHHHHHHHHHHHHHHhh
Confidence 9999986543 2356999999864 555544333 222222 11111111111122223222333
Q ss_pred hcCCcEEEEeCCccc
Q 012680 150 KKNVDVVIVDTAGRL 164 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l 164 (458)
..++++||||+-..+
T Consensus 189 ~~~~~LvVIDSisal 203 (313)
T TIGR02238 189 EEPFRLLIVDSIMAL 203 (313)
T ss_pred ccCCCEEEEEcchHh
Confidence 457999999986543
No 189
>PRK05973 replicative DNA helicase; Provisional
Probab=97.92 E-value=7e-05 Score=72.32 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=37.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
+..+++++|.||+||||++..++...+++|++|++++++-.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 45789999999999999999999999889999999998754
No 190
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.91 E-value=3e-05 Score=73.56 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=21.8
Q ss_pred eEEEeeccccccchhHhhHHHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKK 96 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~ 96 (458)
|.|+++|+.|+||||++.+|......
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~ 26 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHD 26 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 35889999999999999999875543
No 191
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.91 E-value=2.2e-05 Score=74.86 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.1
Q ss_pred EEeeccccccchhHhhHHHHHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
|+++|+.|+||||++.+|.+...
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g 24 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLG 24 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhc
Confidence 68899999999999999986643
No 192
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.91 E-value=0.00015 Score=69.84 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=37.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~ 109 (458)
+..+++++|.+|+||||++.+++..++.. |.+|++++++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 45799999999999999999999999887 999999998853
No 193
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.89 E-value=0.0001 Score=70.32 Aligned_cols=52 Identities=29% Similarity=0.402 Sum_probs=43.0
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
..|.++++++.. +..++++.|.+|+|||+++..+++...++|++|++++++-
T Consensus 3 ~~LD~~l~gGi~-------~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 3 PGLDEMLGGGFP-------EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred hhhHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 356777765432 4678999999999999999999998888899999999874
No 194
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.89 E-value=4.1e-05 Score=70.38 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=35.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.+.++.++|.+||||||++.+|...|..+|++|..|..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 466999999999999999999999999999999998764
No 195
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.88 E-value=0.00011 Score=82.50 Aligned_cols=134 Identities=25% Similarity=0.243 Sum_probs=72.9
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
..|+++|.++|||||+..+|. |.+.. + .+ ..|+.+-..... ...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt------g~~~~-v-gn---------------~pGvTve~k~g~-------------~~~ 47 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT------GARQR-V-GN---------------WAGVTVERKEGQ-------------FST 47 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCCc-c-CC---------------CCCceEeeEEEE-------------EEc
Confidence 368899999999999999884 32221 1 00 111111000000 012
Q ss_pred cCCcEEEEeCCccccccH----HHHHHH--HHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeee-ceeeeecccCCC
Q 012680 151 KNVDVVIVDTAGRLQIDK----AMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDS 223 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~----~l~~el--~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlnk~D~~~ 223 (458)
.++++.++||||...... ....|. ......-.+|-+++|+|+...+.......... +.++ .-+++||+|...
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~-e~giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLL-ELGIPCIVALNMLDIAE 126 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHH-HcCCCEEEEEEchhhhh
Confidence 467899999999865321 111121 11111125788999999976544333222222 2233 348999999764
Q ss_pred CCcc---eeeeeeccCCceeE
Q 012680 224 RGGA---ALSVKEVSGKPIKL 241 (458)
Q Consensus 224 ~~g~---~~~i~~~~g~pI~f 241 (458)
+.+. ...+.+.+|.|+..
T Consensus 127 ~~~i~id~~~L~~~LG~pVvp 147 (772)
T PRK09554 127 KQNIRIDIDALSARLGCPVIP 147 (772)
T ss_pred ccCcHHHHHHHHHHhCCCEEE
Confidence 3332 23455668888854
No 196
>PLN03127 Elongation factor Tu; Provisional
Probab=97.86 E-value=7.4e-05 Score=78.90 Aligned_cols=125 Identities=21% Similarity=0.238 Sum_probs=67.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEe--eccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 146 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV--d~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~ 146 (458)
+...|+++|+.++||||++.+|..+..+.|..-... .+|... .....|+.+-....
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~---------~E~~rGiTi~~~~~------------- 117 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAP---------EEKARGITIATAHV------------- 117 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCCh---------hHhhcCceeeeeEE-------------
Confidence 345688889999999999999987766555431111 122110 11112222111100
Q ss_pred HHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhheeeeeec--eeeeecccCC
Q 012680 147 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT--GAILTKLDGD 222 (458)
Q Consensus 147 ~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~--GvIlnk~D~~ 222 (458)
.+..+++.+++|||||... ++..+.. .+..+|.+++|+|+..+ ....+.+. +....++. -+++||+|..
T Consensus 118 ~~~~~~~~i~~iDtPGh~~----f~~~~~~--g~~~aD~allVVda~~g~~~qt~e~l~-~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 118 EYETAKRHYAHVDCPGHAD----YVKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHIL-LARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred EEcCCCeEEEEEECCCccc----hHHHHHH--HHhhCCEEEEEEECCCCCchhHHHHHH-HHHHcCCCeEEEEEEeeccC
Confidence 0112456799999999753 2333222 22346899999999544 11122221 22233443 3679999975
No 197
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.86 E-value=4.3e-05 Score=74.30 Aligned_cols=39 Identities=38% Similarity=0.669 Sum_probs=35.0
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+|+++|.+||||||++..|+.+|...|++|.+++.|..+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 478999999999999999999999889999999888544
No 198
>PTZ00035 Rad51 protein; Provisional
Probab=97.86 E-value=0.00016 Score=73.52 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=61.1
Q ss_pred cccchHHHHHHHHHHhhhhhcccccccc-----CccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchh
Q 012680 11 ADVSLPVVRRFVQAVSEQAVGVGLIRGV-----RPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTT 85 (458)
Q Consensus 11 adv~~~vv~~~~~~v~~~~~~~~~~~~~-----~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT 85 (458)
.+++..-|.++++.+++.... +...+. ......+..-..+|.++||++.. ...++.++|.+|+||||
T Consensus 62 ~gis~~~~~~i~~~~~~~~~~-~~~ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~-------~G~iteI~G~~GsGKT~ 133 (337)
T PTZ00035 62 KGISEAKVEKIKEAASKLVPM-GFISATEYLEARKNIIRITTGSTQLDKLLGGGIE-------TGSITELFGEFRTGKTQ 133 (337)
T ss_pred hCCCHHHHHHHHHHHHHhccc-CCCCHHHHHHhhccCccccCCcHHHHHHhCCCCC-------CCeEEEEECCCCCchhH
Confidence 677777777777766654321 110000 00011233445677777776542 46799999999999999
Q ss_pred HhhHHHHHHHh------cCCceEEeeccc-cCchhhhH
Q 012680 86 VSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQ 116 (458)
Q Consensus 86 ~a~~LA~~L~~------~G~kVllVd~D~-~rp~a~~~ 116 (458)
++..|+..... .+.+|++||..- ++|..+.+
T Consensus 134 l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ 171 (337)
T PTZ00035 134 LCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ 171 (337)
T ss_pred HHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHH
Confidence 99999876542 456899999853 55554433
No 199
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.85 E-value=8.2e-05 Score=73.37 Aligned_cols=106 Identities=26% Similarity=0.371 Sum_probs=59.7
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
.|+++|.|||||||+|..|+.+|...+++|.+|+-|..+ ... +. +.....+......++..+......
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---------~~~--~~-y~~~~~Ek~~R~~l~s~v~r~ls~ 70 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---------IDR--ND-YADSKKEKEARGSLKSAVERALSK 70 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----------TT--SS-S--GGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---------cch--hh-hhchhhhHHHHHHHHHHHHHhhcc
Confidence 689999999999999999999999999999999865221 000 11 111111112223345555555544
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 193 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~ 193 (458)
-++||+|..-... .+-.++..+++.......++-+++.
T Consensus 71 -~~iVI~Dd~nYiK---g~RYelyclAr~~~~~~c~i~~~~~ 108 (270)
T PF08433_consen 71 -DTIVILDDNNYIK---GMRYELYCLARAYGTTFCVIYCDCP 108 (270)
T ss_dssp --SEEEE-S---SH---HHHHHHHHHHHHTT-EEEEEEEE--
T ss_pred -CeEEEEeCCchHH---HHHHHHHHHHHHcCCCEEEEEECCC
Confidence 3899999876653 6667888888877655555555553
No 200
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=7.8e-06 Score=82.62 Aligned_cols=145 Identities=23% Similarity=0.272 Sum_probs=93.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+.+.|-+..+-.+||||++..+.++...- -+.+|+-.-..+.++.......|+.+.+... .+
T Consensus 36 kirnigiiahidagktttterily~ag~~-----~s~g~vddgdtvtdfla~erergitiqsaav-------------~f 97 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAI-----HSAGDVDDGDTVTDFLAIERERGITIQSAAV-------------NF 97 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhh-----hcccccCCCchHHHHHHHHHhcCceeeeeee-------------ec
Confidence 34788888999999999999997654321 1122322223444444455566777665422 23
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhH-hHhhhhheeeeeece-eeeecccCC--CC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEIGITG-AILTKLDGD--SR 224 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~-~~~~~~~~~~~~i~G-vIlnk~D~~--~~ 224 (458)
.|++|.+.+|||||...+.- |+....+++ |.++.|+|++.|-++ .-.+|......++.. .++||+|.. ..
T Consensus 98 dwkg~rinlidtpghvdf~l----everclrvl--dgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anf 171 (753)
T KOG0464|consen 98 DWKGHRINLIDTPGHVDFRL----EVERCLRVL--DGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANF 171 (753)
T ss_pred ccccceEeeecCCCcceEEE----EHHHHHHHh--cCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhh
Confidence 57899999999999876532 222233333 788999999877433 334566666677744 799999965 33
Q ss_pred CcceeeeeeccCC
Q 012680 225 GGAALSVKEVSGK 237 (458)
Q Consensus 225 ~g~~~~i~~~~g~ 237 (458)
..++.++.+.+|.
T Consensus 172 e~avdsi~ekl~a 184 (753)
T KOG0464|consen 172 ENAVDSIEEKLGA 184 (753)
T ss_pred hhHHHHHHHHhCC
Confidence 4556677777664
No 201
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.84 E-value=2.7e-05 Score=74.66 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=64.9
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-------hH-Hhhhccccccc-eecCCCccChHHHHHh
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------DQ-LVILGEQVGVP-VYTAGTEVKPSQIAKQ 143 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-------~~-l~~~~~~~gv~-v~~~~~~~~~~~i~~~ 143 (458)
++++|..|+||||++..|.......|.-......|.++...- .. ...... .|.. .+....... .
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~-~~~~~~~~~~~~~~------~ 74 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDS-DGEVVNYPDNHLSE------S 74 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCC-CCceecCCCCcccc------c
Confidence 567799999999999999864444444444343332221100 00 000000 0100 000000000 0
Q ss_pred hHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhh-heeeeeeceeeeeccc
Q 012680 144 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLD 220 (458)
Q Consensus 144 ~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~-~~~~~~i~GvIlnk~D 220 (458)
..+.+...++.+.+|||||.... ..++..-.....+|.+++|+|+..+ ......+.. ...+++ .-+|+||+|
T Consensus 75 ~~~~~~~~~~~i~liDtpG~~~~----~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D 149 (224)
T cd04165 75 DIEICEKSSKLVTFIDLAGHERY----LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKID 149 (224)
T ss_pred cceeeeeCCcEEEEEECCCcHHH----HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 01111234678999999996432 2222111111246888999998543 111222211 122334 348999999
Q ss_pred CC
Q 012680 221 GD 222 (458)
Q Consensus 221 ~~ 222 (458)
..
T Consensus 150 ~~ 151 (224)
T cd04165 150 LA 151 (224)
T ss_pred cc
Confidence 64
No 202
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00019 Score=72.69 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=93.4
Q ss_pred CCeEEEee-ccccccchhHhhHHHHHHHh-cCCceEEeeccccCchh---------------------hhHH----hhhc
Q 012680 69 RPTVILLA-GLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAA---------------------IDQL----VILG 121 (458)
Q Consensus 69 ~p~iI~i~-G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~~rp~a---------------------~~~l----~~~~ 121 (458)
+.+++.+. .+||+|=||+|.++|+.++. .+..|+++|.|.+.-.+ .+|. ....
T Consensus 103 ~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~ 182 (366)
T COG4963 103 QGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTR 182 (366)
T ss_pred hceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHhc
Confidence 45677777 56999999999999999986 48999999999643211 1110 0011
Q ss_pred cccccceecCCCccChH-----HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc--
Q 012680 122 EQVGVPVYTAGTEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-- 194 (458)
Q Consensus 122 ~~~gv~v~~~~~~~~~~-----~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~-- 194 (458)
...+..++......... ......+..+ ...||+||+|-| +.+.+....+ +...+++++|++.+.
T Consensus 183 ~~~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~-~~~~~~vV~Dlp---~~~~~~t~~v-----L~~Sd~iviv~e~sl~s 253 (366)
T COG4963 183 LASGLKLLAAPTELAKNYDLKTGAVERLLDLL-RGSFDFVVVDLP---NIWTDWTRQV-----LSGSDEIVIVAEPSLAS 253 (366)
T ss_pred cCCCceeecCCcchhhhcccccchHHHHHHHh-hccCCeEEEcCC---CccchHHHHH-----HhcCCeEEEEecccHHH
Confidence 12344444443222111 1223334443 368999999999 2222222211 223589999998732
Q ss_pred ---hhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCc
Q 012680 195 ---GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238 (458)
Q Consensus 195 ---g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~p 238 (458)
+.+.+...+.+...-.-.-.|+|+++...... ...+.+.++++
T Consensus 254 lR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~~-~~dl~~~~~i~ 299 (366)
T COG4963 254 LRNAKELLDELKRLRPNDPKPILVLNRVGVPKRPE-PSDLEEILGIE 299 (366)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCCC-HHHHHHHhCCc
Confidence 24555555666655555668999998765544 33333344443
No 203
>CHL00071 tufA elongation factor Tu
Probab=97.82 E-value=5.5e-05 Score=79.05 Aligned_cols=128 Identities=22% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+...|+++|+.++||||++..|...+.....+..... +..|+.. .....|+.+-..... +
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~------~~~d~~~-~e~~rg~T~~~~~~~-------------~ 70 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKY------DEIDSAP-EEKARGITINTAHVE-------------Y 70 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCcccccccccc------ccccCCh-hhhcCCEeEEccEEE-------------E
Confidence 3456888999999999999999865442111111000 0111111 112233332111000 1
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhheeeeeec-e-eeeecccCCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT-G-AILTKLDGDS 223 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~-G-vIlnk~D~~~ 223 (458)
.++++.+++|||||.. .+...+ +..+..+|.+++|+|+..+ ....+.+ .+....++. . +++||+|...
T Consensus 71 ~~~~~~~~~iDtPGh~----~~~~~~--~~~~~~~D~~ilVvda~~g~~~qt~~~~-~~~~~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 71 ETENRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSAADGPMPQTKEHI-LLAKQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred ccCCeEEEEEECCChH----HHHHHH--HHHHHhCCEEEEEEECCCCCcHHHHHHH-HHHHHcCCCEEEEEEEccCCCC
Confidence 1245679999999953 233333 2222345899999999644 1122222 222233443 3 5799999753
No 204
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.82 E-value=1.4e-05 Score=83.37 Aligned_cols=169 Identities=24% Similarity=0.368 Sum_probs=99.6
Q ss_pred EEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCchh---------------hhHH-hhhcc------------
Q 012680 72 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---------------IDQL-VILGE------------ 122 (458)
Q Consensus 72 iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a---------------~~~l-~~~~~------------ 122 (458)
.|++.|. +.+|||++++.|...++++|++|. ||++.. ..|+ +.++.
T Consensus 3 ~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~-----PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvL 77 (486)
T COG1492 3 AIMVQGTTSDAGKSFLVAGLCRILARRGYRVA-----PFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVL 77 (486)
T ss_pred ccEEEeccCCcchhhhhhhhhHHHHhcCCccC-----CCchhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEE
Confidence 4777777 999999999999999999999998 776431 1111 10110
Q ss_pred -----ccccceecCCC---ccChHH-----------HHHhhHHHHHhcCCcEEEEeCCccccc----cHHHHHHHHHHHh
Q 012680 123 -----QVGVPVYTAGT---EVKPSQ-----------IAKQGLEEAKKKNVDVVIVDTAGRLQI----DKAMMDELKDVKR 179 (458)
Q Consensus 123 -----~~gv~v~~~~~---~~~~~~-----------i~~~~l~~~~~~~~DvVIIDtpg~l~~----d~~l~~el~~l~~ 179 (458)
..+..++..+. ..++.+ .+.++++.+ ...||+|+++.+|.... +.++. .+ .+..
T Consensus 78 LKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l-~~~~d~Vv~EGAGSpaEiNlr~~Di~-Nm-~~a~ 154 (486)
T COG1492 78 LKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERL-DREYDVVVIEGAGSPAEINLRDRDIA-NM-GVAE 154 (486)
T ss_pred EeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHh-hhcccEEEEecCCChhhcCccccccc-ce-eeeh
Confidence 01112222111 111111 223444443 36899999999887642 11111 11 1112
Q ss_pred hcCcceEEEEEeccchhhHhHhh---hhh--eeeeeeceeeeecccCCCC--CcceeeeeeccCCceeEeecCCccccC
Q 012680 180 VLNPTEVLLVVDAMTGQEAAALV---TTF--NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMEDL 251 (458)
Q Consensus 180 ~~~~~~vllVvda~~g~~~~~~~---~~~--~~~~~i~GvIlnk~D~~~~--~g~~~~i~~~~g~pI~fig~g~~v~dl 251 (458)
.. ..++++|.|-..|-..+... .-+ ..+-.+.|+|+||+.++.. ...+..+.+.+|.|+ +|+.|..++.
T Consensus 155 ~~-dapvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~v--lGv~P~~~~~ 230 (486)
T COG1492 155 IA-DAPVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELTGVPV--LGVLPYLKDA 230 (486)
T ss_pred hc-CCCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHhhCCee--Eeeccccccc
Confidence 22 26789999876543332222 112 2245789999999998743 244556667799999 9999888663
No 205
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.81 E-value=0.00018 Score=66.03 Aligned_cols=42 Identities=33% Similarity=0.472 Sum_probs=37.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
++|.+|+++|.+||||||++..|+..|...+..+.+++.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 367899999999999999999999999888888888887743
No 206
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.80 E-value=2.2e-05 Score=89.06 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=68.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCc----eEEeeccccCchhhhHHhhhccccccceecCCCccChH---HHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKS----CMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPS---QIA 141 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~k----VllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~---~i~ 141 (458)
..|.|+++|+.++||||++.+|......-..+ ..+.|.+ + .....|+.+.......... ..+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~-------~----~E~~rgiti~~~~~~~~~~~~~~~~ 86 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR-------A----DEAERGITIKSTGISLYYEMTDESL 86 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCc-------H----HHHHhCCceecceeEEEeecccccc
Confidence 56899999999999999999997554311111 1111111 1 1112232222111000000 000
Q ss_pred HhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeee-ceeeeecc
Q 012680 142 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKL 219 (458)
Q Consensus 142 ~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlnk~ 219 (458)
...-......++-+.||||||...+ ..++... +..+|.+++|+|+..| +...+.++......++ .-+++||+
T Consensus 87 ~~~~~~~~~~~~~inliDtPGh~dF----~~e~~~a--l~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~ 160 (843)
T PLN00116 87 KDFKGERDGNEYLINLIDSPGHVDF----SSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
T ss_pred cccccccCCCceEEEEECCCCHHHH----HHHHHHH--HhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECC
Confidence 0000000113566789999998643 3333221 1235899999999665 2222333322222222 24899999
Q ss_pred cCC
Q 012680 220 DGD 222 (458)
Q Consensus 220 D~~ 222 (458)
|..
T Consensus 161 D~~ 163 (843)
T PLN00116 161 DRC 163 (843)
T ss_pred ccc
Confidence 976
No 207
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.79 E-value=0.00026 Score=67.75 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=42.7
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+.|.++++++.. +..++++.|.+|+||||++.+++....++|.+|++++++.
T Consensus 7 ~~LD~~l~GGi~-------~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 7 EGLDKLLEGGIP-------RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred hhHHHhhcCCCc-------CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 467777754432 4679999999999999999999987778899999999864
No 208
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.79 E-value=3.8e-05 Score=73.74 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=33.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
+++.++|.+||||||++.+|+..|.++|++|.++..
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 589999999999999999999999999999999953
No 209
>PRK12736 elongation factor Tu; Reviewed
Probab=97.79 E-value=8.8e-05 Score=77.15 Aligned_cols=127 Identities=21% Similarity=0.258 Sum_probs=67.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+...|+++|+.++||||++..|.......|........ ..+... .....|+.+-..... +
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~------~~d~~~-~E~~rg~T~~~~~~~-------------~ 70 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYD------SIDAAP-EEKERGITINTAHVE-------------Y 70 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchh------hhcCCH-HHHhcCccEEEEeeE-------------e
Confidence 34668888999999999999998665544432111000 011110 111223322111000 1
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhheeeeeec--eeeeecccCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT--GAILTKLDGD 222 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~--GvIlnk~D~~ 222 (458)
...++.++||||||.. .++..+ +.....+|.+++|+|+..+ ....+.+ .+....++. -+++||+|..
T Consensus 71 ~~~~~~i~~iDtPGh~----~f~~~~--~~~~~~~d~~llVvd~~~g~~~~t~~~~-~~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 71 ETEKRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVAATDGPMPQTREHI-LLARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred cCCCcEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCchhHHHHH-HHHHHcCCCEEEEEEEecCCc
Confidence 1245689999999953 223332 2222346889999999654 1111222 222233443 3679999964
No 210
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.79 E-value=0.0002 Score=66.35 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=32.1
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHh----------cCCceEEeecccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKK----------QGKSCMLVAGDVY 109 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~----------~G~kVllVd~D~~ 109 (458)
..+.+++|.+|+||||++..++..++. .+.+|+++++|-.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 468999999999999999999999886 5789999999854
No 211
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.79 E-value=3.5e-05 Score=81.33 Aligned_cols=133 Identities=17% Similarity=0.266 Sum_probs=67.1
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceE-Eeec-------cccCch-hhhHHhhhccccccceecCCCccChHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM-LVAG-------DVYRPA-AIDQLVILGEQVGVPVYTAGTEVKPSQI 140 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVl-lVd~-------D~~rp~-a~~~l~~~~~~~gv~v~~~~~~~~~~~i 140 (458)
...++++|+.++||||++..|.+.+..-..+.+ -+.. +.+..+ ..|.. ......|+.+-..
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~-~~Er~rGiTi~~~--------- 76 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKL-KAERERGITIDIA--------- 76 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCC-HhHHhcCceEEEE---------
Confidence 456888899999999999999876542110000 0000 000000 01111 1111223322111
Q ss_pred HHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh--------hHhHhhhhheeeeeec
Q 012680 141 AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--------EAAALVTTFNIEIGIT 212 (458)
Q Consensus 141 ~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~--------~~~~~~~~~~~~~~i~ 212 (458)
+..+.+.++.+.||||||... +...+.. .+..+|.+++|+|+..+. ........+....++.
T Consensus 77 ----~~~~~~~~~~i~liDtPGh~d----f~~~~~~--g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 77 ----LWKFETTKYYCTVIDAPGHRD----FIKNMIT--GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred ----EEEecCCCEEEEEEECCCHHH----HHHHHHh--hhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCC
Confidence 111223578899999999653 2333222 223468999999996541 1112222233344552
Q ss_pred --eeeeecccCC
Q 012680 213 --GAILTKLDGD 222 (458)
Q Consensus 213 --GvIlnk~D~~ 222 (458)
-|++||+|..
T Consensus 147 ~iIV~vNKmD~~ 158 (447)
T PLN00043 147 QMICCCNKMDAT 158 (447)
T ss_pred cEEEEEEcccCC
Confidence 3568999964
No 212
>PTZ00416 elongation factor 2; Provisional
Probab=97.78 E-value=1.7e-05 Score=89.87 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=67.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCce--EEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSC--MLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 146 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kV--llVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~ 146 (458)
..+.|+++|+.++||||++..|......-.... .....|. ++ .....|+.+.............. .
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~-~~--------~E~~rgiti~~~~~~~~~~~~~~---~ 85 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDT-RA--------DEQERGITIKSTGISLYYEHDLE---D 85 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeeccc-ch--------hhHhhcceeeccceEEEeecccc---c
Confidence 467999999999999999999976443111100 0001111 00 11122332221110000000000 0
Q ss_pred HHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeee-ceeeeecccCC
Q 012680 147 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD 222 (458)
Q Consensus 147 ~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlnk~D~~ 222 (458)
.-...++-+.||||||...+ ..++... +...|.+++|+|+..| +...+.++......++ .-+++||+|..
T Consensus 86 ~~~~~~~~i~liDtPG~~~f----~~~~~~a--l~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 86 GDDKQPFLINLIDSPGHVDF----SSEVTAA--LRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ccCCCceEEEEEcCCCHHhH----HHHHHHH--HhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 00113567999999998753 3333222 2235899999999654 2222223322222222 34889999986
No 213
>PRK06526 transposase; Provisional
Probab=97.78 E-value=0.00018 Score=70.40 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=74.7
Q ss_pred HHHHhcccchHHHHHHHHHHhhhhhccc-cccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccch
Q 012680 6 RALLEADVSLPVVRRFVQAVSEQAVGVG-LIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKT 84 (458)
Q Consensus 6 ~~Ll~adv~~~vv~~~~~~v~~~~~~~~-~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKT 84 (458)
..|+++.+...-.+.+-.+++...+... -...+..... ..+-...+..+.. ..+-. .+..++++|++|+|||
T Consensus 40 ~~ll~~E~~~R~~~~~~~~lk~a~~p~~~~le~fd~~~~-~~~~~~~~~~l~~-----~~fi~-~~~nlll~Gp~GtGKT 112 (254)
T PRK06526 40 AACLQREVAARESHGGEGRIRAARFPARKSLEEFDFDHQ-RSLKRDTIAHLGT-----LDFVT-GKENVVFLGPPGTGKT 112 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccCccC-CCcchHHHHHHhc-----Cchhh-cCceEEEEeCCCCchH
Confidence 4566666666666666666665444332 1111111111 1111222222211 11112 3457899999999999
Q ss_pred hHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCccc
Q 012680 85 TVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 164 (458)
Q Consensus 85 T~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l 164 (458)
+++.+|+..+.+.|++|.++.+. ..++++... . ..+ .....+..+ ..+|++|||-.|..
T Consensus 113 hLa~al~~~a~~~g~~v~f~t~~----~l~~~l~~~-~-------~~~-------~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 113 HLAIGLGIRACQAGHRVLFATAA----QWVARLAAA-H-------HAG-------RLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred HHHHHHHHHHHHCCCchhhhhHH----HHHHHHHHH-H-------hcC-------cHHHHHHHh--ccCCEEEEcccccC
Confidence 99999999999999999876543 122222211 0 000 111223332 46899999999987
Q ss_pred cccHHH
Q 012680 165 QIDKAM 170 (458)
Q Consensus 165 ~~d~~l 170 (458)
..+...
T Consensus 172 ~~~~~~ 177 (254)
T PRK06526 172 PFEPEA 177 (254)
T ss_pred CCCHHH
Confidence 654433
No 214
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.78 E-value=7.2e-05 Score=75.20 Aligned_cols=109 Identities=23% Similarity=0.352 Sum_probs=65.2
Q ss_pred hhHHHhHHHHHHhhc-cceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc-cCchhhhHHhhh
Q 012680 43 QLVKIVRDELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVIL 120 (458)
Q Consensus 43 ~~~~~v~~el~~llg-~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~-~rp~a~~~l~~~ 120 (458)
.++..-..+|...|| ++.. ..+++-+.|+.++||||++..+...+.+.|..+++||++- ..|..... +
T Consensus 32 ~~i~TG~~~LD~aLg~GG~p-------~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~---l 101 (322)
T PF00154_consen 32 EVISTGSPALDYALGIGGLP-------RGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAES---L 101 (322)
T ss_dssp -EE--S-HHHHHHTSSSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHH---T
T ss_pred ceEecCCcccchhhccCccc-------cCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHh---c
Confidence 456677778888887 4322 4679999999999999999999998888899999999852 22332222 2
Q ss_pred cccc-ccceecCCCccChHHHHHhhHHHH-HhcCCcEEEEeCCcccc
Q 012680 121 GEQV-GVPVYTAGTEVKPSQIAKQGLEEA-KKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 121 ~~~~-gv~v~~~~~~~~~~~i~~~~l~~~-~~~~~DvVIIDtpg~l~ 165 (458)
+-.. .+-+... +..+.+...++.+ +...+|+|+||+.+.+.
T Consensus 102 Gvdl~rllv~~P----~~~E~al~~~e~lirsg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 102 GVDLDRLLVVQP----DTGEQALWIAEQLIRSGAVDLVVVDSVAALV 144 (322)
T ss_dssp T--GGGEEEEE-----SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B
T ss_pred CccccceEEecC----CcHHHHHHHHHHHhhcccccEEEEecCcccC
Confidence 2111 1212221 2223333344443 45678999999988775
No 215
>PRK00049 elongation factor Tu; Reviewed
Probab=97.78 E-value=6.2e-05 Score=78.36 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=66.9
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEe--eccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV--d~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
...|+++|+.++||||++..|.....+.|..-... ..| ... .....|+..-.....
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d--------~~~-~E~~rg~Ti~~~~~~------------- 69 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQID--------KAP-EEKARGITINTAHVE------------- 69 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhcc--------CCh-HHHhcCeEEeeeEEE-------------
Confidence 35688889999999999999987766554311100 111 110 111223322111000
Q ss_pred HHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeeec--eeeeecccCC
Q 012680 148 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGIT--GAILTKLDGD 222 (458)
Q Consensus 148 ~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~--GvIlnk~D~~ 222 (458)
+.+.++.+++|||||.. .+..++.. ....+|.+++|+|+..+ .........+....++. -|++||+|..
T Consensus 70 ~~~~~~~i~~iDtPG~~----~f~~~~~~--~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 70 YETEKRHYAHVDCPGHA----DYVKNMIT--GAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred EcCCCeEEEEEECCCHH----HHHHHHHh--hhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc
Confidence 11245689999999964 33333322 22346899999999654 11111112222233343 2478999975
No 216
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.77 E-value=2.4e-05 Score=87.58 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=72.9
Q ss_pred HhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCc----eEEeeccccCchhhhHHhhhcc
Q 012680 47 IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS----CMLVAGDVYRPAAIDQLVILGE 122 (458)
Q Consensus 47 ~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~k----VllVd~D~~rp~a~~~l~~~~~ 122 (458)
...+.+.+++... ...|.|+++|+.++||||++.+|.+....-..+ ..+.|.+ + ...
T Consensus 5 ~~~~~~~~~~~~~--------~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~---~--------~E~ 65 (731)
T PRK07560 5 KMVEKILELMKNP--------EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFD---E--------EEQ 65 (731)
T ss_pred HHHHHHHHHhhch--------hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCcc---H--------HHH
Confidence 3455666666531 246899999999999999999997654321111 1111111 0 111
Q ss_pred ccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHh
Q 012680 123 QVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAAL 201 (458)
Q Consensus 123 ~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~ 201 (458)
..|+.+-........ .....++.+.||||||...+.. ++..... ..|.+++|+|+..+ +.....
T Consensus 66 ~rgiTi~~~~~~~~~---------~~~~~~~~i~liDtPG~~df~~----~~~~~l~--~~D~avlVvda~~g~~~~t~~ 130 (731)
T PRK07560 66 ARGITIKAANVSMVH---------EYEGKEYLINLIDTPGHVDFGG----DVTRAMR--AVDGAIVVVDAVEGVMPQTET 130 (731)
T ss_pred HhhhhhhccceEEEE---------EecCCcEEEEEEcCCCccChHH----HHHHHHH--hcCEEEEEEECCCCCCccHHH
Confidence 112221111000000 0011367799999999875432 2222222 23889999999655 211222
Q ss_pred hhhh--eeeeeeceeeeecccCC
Q 012680 202 VTTF--NIEIGITGAILTKLDGD 222 (458)
Q Consensus 202 ~~~~--~~~~~i~GvIlnk~D~~ 222 (458)
++.. ....+. -+++||+|..
T Consensus 131 ~~~~~~~~~~~~-iv~iNK~D~~ 152 (731)
T PRK07560 131 VLRQALRERVKP-VLFINKVDRL 152 (731)
T ss_pred HHHHHHHcCCCe-EEEEECchhh
Confidence 2221 223333 4889999964
No 217
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.76 E-value=0.00016 Score=62.37 Aligned_cols=106 Identities=19% Similarity=0.339 Sum_probs=59.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc-----CCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-----GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 143 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-----G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~ 143 (458)
..++++++|++|+||||++..++..+... ..+++.+.+.... ....-...+....+.+... .....+....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLKS---RQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSSS---TS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccccc---cCCHHHHHHH
Confidence 45689999999999999999999988764 6777878776555 1111122223333333222 2334444444
Q ss_pred hHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHh
Q 012680 144 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179 (458)
Q Consensus 144 ~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~ 179 (458)
....+......++|||-.-.+. +...+..+..+.+
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLF-SDEFLEFLRSLLN 113 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHH-THHHHHHHHHHTC
T ss_pred HHHHHHhcCCeEEEEeChHhcC-CHHHHHHHHHHHh
Confidence 4444443444689999877653 4555555555444
No 218
>PRK06696 uridine kinase; Validated
Probab=97.76 E-value=4.6e-05 Score=72.90 Aligned_cols=43 Identities=30% Similarity=0.545 Sum_probs=38.7
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
..|.+|.|+|.+||||||+|..|+..|...|..|.++..|-|.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3688999999999999999999999999889999988888665
No 219
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.75 E-value=0.00014 Score=70.94 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.2
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.+-.|++.|.+|+||||+...|.
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLl 52 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIF 52 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHh
Confidence 46688899999999999998876
No 220
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.74 E-value=0.00047 Score=67.43 Aligned_cols=58 Identities=22% Similarity=0.450 Sum_probs=45.9
Q ss_pred HHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhH
Q 012680 52 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 116 (458)
Q Consensus 52 l~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~ 116 (458)
|.++++++.. ..++++++|.||+|||+++.+++...++.|.+|++|..|-.......+
T Consensus 12 lD~~l~GG~p-------~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 12 LDEILGGGLP-------RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred hHHHhcCCCc-------CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 5556664432 467999999999999999999999999999999999998654433333
No 221
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.74 E-value=7.9e-05 Score=77.80 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=36.8
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hh--HhHhhhhheeeeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QE--AAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~--~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
.++.+.||||||...+ ..++.. .+..+|.+++|+|+..+ ++ ....+..+. ..-.-+++||+|..
T Consensus 78 ~~~~~~liDtPGh~~f----~~~~~~--~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~--~~~iivviNK~D~~ 146 (406)
T TIGR02034 78 DKRKFIVADTPGHEQY----TRNMAT--GASTADLAVLLVDARKGVLEQTRRHSYIASLLG--IRHVVLAVNKMDLV 146 (406)
T ss_pred CCeEEEEEeCCCHHHH----HHHHHH--HHhhCCEEEEEEECCCCCccccHHHHHHHHHcC--CCcEEEEEEecccc
Confidence 5678999999996432 222221 22345889999999654 21 122222221 22123689999975
No 222
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.73 E-value=0.00045 Score=70.36 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=59.2
Q ss_pred cccchHHHHHHHHHHhhhhhcccccccc-----CccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchh
Q 012680 11 ADVSLPVVRRFVQAVSEQAVGVGLIRGV-----RPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTT 85 (458)
Q Consensus 11 adv~~~vv~~~~~~v~~~~~~~~~~~~~-----~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT 85 (458)
.+++..-+.++++.++..... ....+. ......+..-..+|.++||++.. ...++.++|.+|+|||+
T Consensus 70 ~g~s~~~~~ki~~~a~~~~~~-~~~ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~-------~G~ItEI~G~~GsGKTq 141 (344)
T PLN03187 70 KGLSEAKVDKICEAAEKLLNQ-GFITGSDALLKRKSVVRITTGSQALDELLGGGIE-------TRCITEAFGEFRSGKTQ 141 (344)
T ss_pred cCCCHHHHHHHHHHHHHhhcc-cCCcHHHHHhhhccCceecCCcHhHHhhcCCCCC-------CCeEEEEecCCCCChhH
Confidence 566666677766655543211 110000 00011233444567777776532 45799999999999999
Q ss_pred HhhHHHHHHHh---c---CCceEEeecc-ccCchhhhH
Q 012680 86 VSAKLANYLKK---Q---GKSCMLVAGD-VYRPAAIDQ 116 (458)
Q Consensus 86 ~a~~LA~~L~~---~---G~kVllVd~D-~~rp~a~~~ 116 (458)
+|..|+...+. . +.+|++||.. .|+|.-+.+
T Consensus 142 l~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ 179 (344)
T PLN03187 142 LAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP 179 (344)
T ss_pred HHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH
Confidence 99999875542 1 3689999985 356654444
No 223
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.72 E-value=5.8e-05 Score=79.72 Aligned_cols=66 Identities=15% Similarity=0.280 Sum_probs=40.1
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh--------hHhHhhhhheeeeeec--eeeeecc
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--------EAAALVTTFNIEIGIT--GAILTKL 219 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~--------~~~~~~~~~~~~~~i~--GvIlnk~ 219 (458)
+.++.+.||||||... +..++... +..+|.+++|||+..|- ........+...+++. -|++||+
T Consensus 82 ~~~~~i~lIDtPGh~~----f~~~~~~g--~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKm 155 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRD----FIKNMITG--TSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKM 155 (446)
T ss_pred cCCeEEEEEECCChHH----HHHHHHHh--hhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcc
Confidence 4678899999999543 33333222 23468899999996541 1222223333345553 3689999
Q ss_pred cC
Q 012680 220 DG 221 (458)
Q Consensus 220 D~ 221 (458)
|.
T Consensus 156 D~ 157 (446)
T PTZ00141 156 DD 157 (446)
T ss_pred cc
Confidence 94
No 224
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.72 E-value=0.0001 Score=68.85 Aligned_cols=116 Identities=21% Similarity=0.277 Sum_probs=61.3
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
.|+++|++|+||||+...|. |.++.....+ .++. +.. ..... ....
T Consensus 2 ~i~lvG~~g~GKSsl~N~il------g~~~~~~~~~--~~~~-------T~~--~~~~~-----------------~~~~ 47 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTIL------GREVFESKLS--ASSV-------TKT--CQKES-----------------AVWD 47 (196)
T ss_pred EEEEECCCCCCHHHHHHHhh------CCCccccccC--CCCc-------ccc--cceee-----------------EEEC
Confidence 47889999999999999986 4444322211 0000 000 00000 0114
Q ss_pred CCcEEEEeCCcccccc---HHHHHHHHHHHhh--cCcceEEEEEeccc-hhhHhHhhhh----heee-eeeceeeeeccc
Q 012680 152 NVDVVIVDTAGRLQID---KAMMDELKDVKRV--LNPTEVLLVVDAMT-GQEAAALVTT----FNIE-IGITGAILTKLD 220 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d---~~l~~el~~l~~~--~~~~~vllVvda~~-g~~~~~~~~~----~~~~-~~i~GvIlnk~D 220 (458)
+..++||||||....+ .....++...... -.++.+++|+++.. .++....+.. |.+. ....-+++|+.|
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 5689999999987642 2333344332222 23577888988742 2222222222 2221 233457888887
Q ss_pred C
Q 012680 221 G 221 (458)
Q Consensus 221 ~ 221 (458)
.
T Consensus 128 ~ 128 (196)
T cd01852 128 D 128 (196)
T ss_pred c
Confidence 5
No 225
>PRK08233 hypothetical protein; Provisional
Probab=97.71 E-value=7.7e-05 Score=68.30 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=28.3
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
+.+|+++|.+||||||+|..|+..|.. ..+...|.+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~ 38 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRY 38 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCE
Confidence 578999999999999999999987742 345555544
No 226
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=4.6e-05 Score=79.86 Aligned_cols=130 Identities=21% Similarity=0.302 Sum_probs=87.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+-|.+.++.+--=||||++-.|.... ..++.+..+....|.+. +.++.|+.+-.-....-. +
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t-------g~i~~~~~q~q~LDkl~-vERERGITIkaQtasify----~------ 120 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT-------GTIDNNIGQEQVLDKLQ-VERERGITIKAQTASIFY----K------ 120 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh-------CCCCCCCchhhhhhhhh-hhhhcCcEEEeeeeEEEE----E------
Confidence 45888999999999999998885322 25666666666666654 445567766432211100 0
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hhHhHhhhhheeeeeeceeeeecccCCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS 223 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlnk~D~~~ 223 (458)
....|-+.+|||||...+..+....+.. ++.++|||||..| |+..+...+|..++.+. .|+||+|...
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaa------c~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iI-pVlNKIDlp~ 191 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAA------CDGALLVVDASQGVQAQTVANFYLAFEAGLAII-PVLNKIDLPS 191 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhh------cCceEEEEEcCcCchHHHHHHHHHHHHcCCeEE-EeeeccCCCC
Confidence 0134889999999998776555555432 5899999999766 66666667776666553 7899999763
No 227
>COG4240 Predicted kinase [General function prediction only]
Probab=97.71 E-value=0.00015 Score=68.64 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=54.9
Q ss_pred ccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcC-CceEEeeccccCchhhhHHh
Q 012680 40 PDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLV 118 (458)
Q Consensus 40 p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G-~kVllVd~D~~rp~a~~~l~ 118 (458)
+..++.+++.+--..++-. ..+..+..++|-|+.++|++||||||++..|-..|..+| ++++-.+.|-+--...+++.
T Consensus 21 ~p~~~~~~~~dl~Lpll~K-iap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~ 99 (300)
T COG4240 21 LPPAFAALAQDLHLPLLAK-IAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLR 99 (300)
T ss_pred CcHHHHHHHHHHHHHHHHh-hhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHH
Confidence 3345566666666555543 223333445799999999999999999999999999888 79998988754333334443
No 228
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.70 E-value=0.00011 Score=65.96 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.2
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
+|+++|.+|+||||+..+|.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~ 21 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIR 21 (168)
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 58899999999999998885
No 229
>PRK10218 GTP-binding protein; Provisional
Probab=97.69 E-value=3.9e-05 Score=83.67 Aligned_cols=123 Identities=25% Similarity=0.310 Sum_probs=66.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh--cCCce--EEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSC--MLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 144 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~--~G~kV--llVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~ 144 (458)
..+.|+++|+.++||||++.+|...... ....+ .+.|.+ ......|+.+......
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~-----------~~E~erGiTi~~~~~~---------- 62 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSN-----------DLEKERGITILAKNTA---------- 62 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccc-----------cccccCceEEEEEEEE----------
Confidence 4578999999999999999998753211 00000 111111 0112233333321111
Q ss_pred HHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhh--heeeeeeceeeeecccC
Q 012680 145 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTT--FNIEIGITGAILTKLDG 221 (458)
Q Consensus 145 l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~--~~~~~~i~GvIlnk~D~ 221 (458)
+.+.++.+.|+||||...+.. ++.... -..|.+++|+|+..+ +......+. ....+++ -|++||+|.
T Consensus 63 ---i~~~~~~inliDTPG~~df~~----~v~~~l--~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~ 132 (607)
T PRK10218 63 ---IKWNDYRINIVDTPGHADFGG----EVERVM--SMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDR 132 (607)
T ss_pred ---EecCCEEEEEEECCCcchhHH----HHHHHH--HhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCC
Confidence 123578899999999764332 222222 235899999999655 111112222 2223343 489999997
Q ss_pred C
Q 012680 222 D 222 (458)
Q Consensus 222 ~ 222 (458)
.
T Consensus 133 ~ 133 (607)
T PRK10218 133 P 133 (607)
T ss_pred C
Confidence 5
No 230
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.69 E-value=0.00098 Score=69.91 Aligned_cols=146 Identities=19% Similarity=0.305 Sum_probs=77.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeeccccCchhhhHHhhhccccccceecCCC-ccChH--HHHHhh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPS--QIAKQG 144 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~-~~~~~--~i~~~~ 144 (458)
+..+++++|.||+||||++.++|..++ +.|++|++++++.........+ .+...+++...... ..+.. ..+..+
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl--~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 270 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERL--LASKSGINTGNIRTGRFNDSDFNRLLNA 270 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 457899999999999999999998887 6799999999885332222211 12223333221110 11122 223344
Q ss_pred HHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc---c---hh-------hHhHhhhhheeeeee
Q 012680 145 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM---T---GQ-------EAAALVTTFNIEIGI 211 (458)
Q Consensus 145 l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~---~---g~-------~~~~~~~~~~~~~~i 211 (458)
+..+. +..+.|.|+|+. ..+ .+...+..+.... +..-++|||.. . +. ...+.++.+....++
T Consensus 271 ~~~l~--~~~l~i~d~~~~-t~~-~i~~~~r~~~~~~-~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i 345 (421)
T TIGR03600 271 VDRLS--EKDLYIDDTGGL-TVA-QIRSIARRIKRKK-GGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDV 345 (421)
T ss_pred HHHHh--cCCEEEECCCCC-CHH-HHHHHHHHHHHhc-CCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 44432 456666666543 221 2223333333221 12236777761 1 11 112223445556667
Q ss_pred ceeeeecccC
Q 012680 212 TGAILTKLDG 221 (458)
Q Consensus 212 ~GvIlnk~D~ 221 (458)
..++++.+..
T Consensus 346 ~Vi~lsQlnr 355 (421)
T TIGR03600 346 PVVLLAQLNR 355 (421)
T ss_pred cEEEecccCc
Confidence 6677777653
No 231
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.69 E-value=0.00015 Score=61.65 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=17.6
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|++.|.+|+||||+..+|.
T Consensus 2 V~iiG~~~~GKSTlin~l~ 20 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALT 20 (116)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6788999999999999987
No 232
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.68 E-value=0.00012 Score=70.09 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=40.2
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhc------CCceEEeeccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV 108 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~------G~kVllVd~D~ 108 (458)
..|.++++++.. ...++.++|.+|+||||++..++...... +.+|++++++-
T Consensus 6 ~~lD~~l~GGi~-------~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 6 KALDELLGGGIE-------TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred hhhHhhccCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 456667765432 46799999999999999999998765443 47899999864
No 233
>PRK06762 hypothetical protein; Provisional
Probab=97.68 E-value=0.00011 Score=66.71 Aligned_cols=38 Identities=42% Similarity=0.711 Sum_probs=31.9
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
|++|+++|.+||||||+|..|+..+ |..+.+++.|..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 6799999999999999999999877 4467788877544
No 234
>PRK12735 elongation factor Tu; Reviewed
Probab=97.67 E-value=0.00016 Score=75.24 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=65.8
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...|+++|+.++||||++..|...+.+.|..-..... ..++.. .....|+.+-..... +.
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~------~~d~~~-~E~~rGiT~~~~~~~-------------~~ 71 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYD------QIDNAP-EEKARGITINTSHVE-------------YE 71 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhh------hccCCh-hHHhcCceEEEeeeE-------------Ec
Confidence 3568888999999999999998766554431110000 011111 112223322111000 11
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhheeeeeec--eeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT--GAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~--GvIlnk~D~~ 222 (458)
..+..++||||||.. .+...+. ..+..+|.+++|+|+..+ ....+.+. +....++. -+++||+|..
T Consensus 72 ~~~~~i~~iDtPGh~----~f~~~~~--~~~~~aD~~llVvda~~g~~~qt~e~l~-~~~~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 72 TANRHYAHVDCPGHA----DYVKNMI--TGAAQMDGAILVVSAADGPMPQTREHIL-LARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred CCCcEEEEEECCCHH----HHHHHHH--hhhccCCEEEEEEECCCCCchhHHHHHH-HHHHcCCCeEEEEEEecCCc
Confidence 245678999999963 2333332 223356888999999653 11112222 22223343 2468999975
No 235
>PRK07667 uridine kinase; Provisional
Probab=97.67 E-value=7.1e-05 Score=70.06 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=37.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.+.+|.++|.+||||||+|..|+..|.+.|.+|.+++.|-|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 45799999999999999999999999999999999999864
No 236
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.67 E-value=0.00015 Score=63.96 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=37.6
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHH--HHhhcCcceEEEEEeccch--hhHhHhhhhheeeeeeceeeeecccCCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 223 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~--l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlnk~D~~~ 223 (458)
.++++.|+||||...........+.. ....-..+.+++|+|+... .........+...-...-+|+||+|...
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 35789999999986532211111111 1112235788999998533 1111111111111112348999999754
No 237
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.65 E-value=0.00036 Score=74.55 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=43.0
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDV 108 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~ 108 (458)
+.|.++++++.. +.++++++|.+|+||||++..+++.-+++ |.++++|.++-
T Consensus 8 ~gLD~il~GGlp-------~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 8 EGFDDISHGGLP-------IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred hhHHHhcCCCCC-------CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 567777776542 56899999999999999999998876665 99999999973
No 238
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.65 E-value=9.5e-05 Score=64.42 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=37.8
Q ss_pred CCcEEEEeCCccccccHHHH---HHHHHHHhhcCcceEEEEEeccchhhHhHh--hhhh-eeeeeeceeeeecccCCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMM---DELKDVKRVLNPTEVLLVVDAMTGQEAAAL--VTTF-NIEIGITGAILTKLDGDS 223 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~---~el~~l~~~~~~~~vllVvda~~g~~~~~~--~~~~-~~~~~i~GvIlnk~D~~~ 223 (458)
.++++|+||||......... .....+ ...++.+++|+|+......... ...+ ....+ .-+++||+|...
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~--~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~ 118 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRV--LERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLP 118 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHH--HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEccccCC
Confidence 67899999999754321110 111111 2235888999998554322222 2221 12223 348999999754
No 239
>PLN03126 Elongation factor Tu; Provisional
Probab=97.64 E-value=0.0002 Score=76.14 Aligned_cols=128 Identities=23% Similarity=0.240 Sum_probs=65.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...++++|+.++||||++..|...+...+.+.. ......|... .....|+.+-..... +.
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~------~~~~~~D~~~-~Er~rGiTi~~~~~~-------------~~ 140 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAP------KKYDEIDAAP-EERARGITINTATVE-------------YE 140 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccc------cccccccCCh-hHHhCCeeEEEEEEE-------------Ee
Confidence 456888899999999999999866543221110 0000011110 111123322111000 01
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh-hHhHhhhhheeeeeec--eeeeecccCCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGIT--GAILTKLDGDS 223 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~-~~~~~~~~~~~~~~i~--GvIlnk~D~~~ 223 (458)
.+++.+.||||||... +..++ +..+..+|.+++|+|+..+- ........+....++. -+++||+|...
T Consensus 141 ~~~~~i~liDtPGh~~----f~~~~--~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 141 TENRHYAHVDCPGHAD----YVKNM--ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred cCCcEEEEEECCCHHH----HHHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 2466889999999653 22333 12222458899999986541 1111112222233443 36799999743
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.64 E-value=5.1e-05 Score=80.77 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=21.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
..-.|+++|+.++||||++..|.+..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~ 51 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDT 51 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhc
Confidence 34577888999999999999998654
No 241
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.64 E-value=0.00025 Score=63.32 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.0
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+..|+++|.+|+||||+...|.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~ 23 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALL 23 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHh
Confidence 4468899999999999998885
No 242
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.64 E-value=7.4e-05 Score=67.79 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=36.1
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+.|+.++|..+|||||++.+|...|..+|++|.+|.-+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 569999999999999999999999999999999998653
No 243
>PRK08760 replicative DNA helicase; Provisional
Probab=97.64 E-value=0.0012 Score=70.38 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=36.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-cCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~~r 110 (458)
+..+++++|.||+||||++.++|...+. .|++|++++++...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 4578999999999999999999998874 59999999987643
No 244
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.63 E-value=0.00021 Score=66.94 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.6
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..|+++|.+||||||+...|.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~ 62 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALT 62 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHh
Confidence 578888999999999997775
No 245
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.63 E-value=0.00016 Score=67.27 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=35.7
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh--hHhHhhhhheeeeee-ceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGI-TGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i-~GvIlnk~D~~ 222 (458)
.++.+.|+||||... +..++. ...-.++.+++|+|+..+. ...+... +....++ .-+|+||+|..
T Consensus 66 ~~~~~~i~DtpG~~~----~~~~~~--~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 66 ENLQITLVDCPGHAS----LIRTII--GGAQIIDLMLLVVDATKGIQTQTAECLV-IGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred cCceEEEEECCCcHH----HHHHHH--HHHhhCCEEEEEEECCCCccHHHHHHHH-HHHHcCCCEEEEEECcccC
Confidence 468899999999742 222221 1122357889999996532 1111111 1111122 23889999964
No 246
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.62 E-value=0.00021 Score=62.66 Aligned_cols=32 Identities=34% Similarity=0.625 Sum_probs=26.0
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+|+++|++||||||++..|+..+. ..+++.|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 588999999999999988875544 56788884
No 247
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.62 E-value=0.0002 Score=67.24 Aligned_cols=90 Identities=22% Similarity=0.375 Sum_probs=47.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchh--hhHHhhhccccccceecCCCccChHHHHHhhH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA--IDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 145 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a--~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l 145 (458)
..|.++++.|.+||||||++..+...+. +..+.+|+.|.++... .+.+....... . ..........+....+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~-~---~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDE-A---SELTQKEASRLAEKLI 86 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCC-T---HHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhh-h---HHHHHHHHHHHHHHHH
Confidence 5799999999999999999998877665 5667889999887432 11211110000 0 0000111223445556
Q ss_pred HHHHhcCCcEEEEeCCccc
Q 012680 146 EEAKKKNVDVVIVDTAGRL 164 (458)
Q Consensus 146 ~~~~~~~~DvVIIDtpg~l 164 (458)
+.+...++++| +||....
T Consensus 87 ~~a~~~~~nii-~E~tl~~ 104 (199)
T PF06414_consen 87 EYAIENRYNII-FEGTLSN 104 (199)
T ss_dssp HHHHHCT--EE-EE--TTS
T ss_pred HHHHHcCCCEE-EecCCCC
Confidence 66666677654 4886653
No 248
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.61 E-value=0.00068 Score=59.58 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=37.5
Q ss_pred CCcEEEEeCCccccccHHHHH--HHHHHHhhcCcceEEEEEeccchh--hHhHhhhhheeeeeeceeeeecccCCCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMD--ELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDSR 224 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~--el~~l~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~GvIlnk~D~~~~ 224 (458)
++.++++||||.......... ..........++.+++|+|+.... ........ ....+ .-+|+||+|....
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~-vi~v~nK~D~~~~ 122 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-PADKP-IIVVLNKSDLLPD 122 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-hcCCC-EEEEEEchhcCCc
Confidence 567899999997543211110 001112223468889999996332 22222221 11222 3489999997543
No 249
>PRK15453 phosphoribulokinase; Provisional
Probab=97.60 E-value=0.00019 Score=70.70 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=39.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
++.+|+++|.+||||||++..|+..|...+.++.+++.|-|..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4679999999999999999999999988888899999998875
No 250
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.59 E-value=0.00011 Score=69.09 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=18.5
Q ss_pred EEEeeccccccchhHhhHHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLAN 92 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~ 92 (458)
.|.+.|+.|+||||++..|+.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~ 22 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSG 22 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578899999999999999953
No 251
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.59 E-value=0.0005 Score=73.94 Aligned_cols=57 Identities=30% Similarity=0.538 Sum_probs=45.4
Q ss_pred HHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 45 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 45 ~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
++.-...|.++++++.. +..++++.|.+|+|||+++..++...++.|.+|++++.+-
T Consensus 255 ~~tGi~~lD~~l~GG~~-------~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 255 ISSGVPDLDEMLGGGFF-------RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred ccCCcHHHHHhhcCCCC-------CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 34445566666664421 4678999999999999999999999989999999999874
No 252
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.59 E-value=0.00029 Score=73.35 Aligned_cols=124 Identities=23% Similarity=0.264 Sum_probs=65.9
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEe--eccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV--d~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
...|+++|+.++||||++..|...+.+.|..-... ..| ... .....|+.+-.....
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d--------~~~-~E~~rG~Ti~~~~~~------------- 69 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQID--------NAP-EEKARGITINTAHVE------------- 69 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhccccccccccc--------CCH-HHHhcCcceeeEEEE-------------
Confidence 45688889999999999999987666544421100 111 110 111223322111000
Q ss_pred HHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhheeeeeece--eeeecccCC
Q 012680 148 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITG--AILTKLDGD 222 (458)
Q Consensus 148 ~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~G--vIlnk~D~~ 222 (458)
+...++.+.|+||||... +...+ +.....+|.+++|+|+..+ ....+.+.. ....++.- +++||+|..
T Consensus 70 ~~~~~~~~~liDtpGh~~----f~~~~--~~~~~~~D~~ilVvda~~g~~~qt~e~l~~-~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 70 YETENRHYAHVDCPGHAD----YVKNM--ITGAAQMDGAILVVSATDGPMPQTREHILL-ARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred EcCCCEEEEEEECCchHH----HHHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHH-HHHcCCCEEEEEEEecccC
Confidence 012456789999999643 22222 2223346889999999653 122222221 12234432 468999964
No 253
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.58 E-value=0.00015 Score=65.92 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.2
Q ss_pred eEEEeeccccccchhHhhHHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANY 93 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~ 93 (458)
|.|+++|.+|+||||+..+|...
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~ 23 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLEL 23 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 254
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.57 E-value=0.00042 Score=69.26 Aligned_cols=52 Identities=27% Similarity=0.420 Sum_probs=36.4
Q ss_pred hhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEe
Q 012680 43 QLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 104 (458)
Q Consensus 43 ~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV 104 (458)
++-.+..++|.++++..... ......|++.|.+|+||||+...|. |.++..+
T Consensus 15 ~~~~~tq~~l~~~l~~l~~~----~~~~~rIllvGktGVGKSSliNsIl------G~~v~~v 66 (313)
T TIGR00991 15 QFPPATQTKLLELLGKLKEE----DVSSLTILVMGKGGVGKSSTVNSII------GERIATV 66 (313)
T ss_pred cCCHHHHHHHHHHHHhcccc----cccceEEEEECCCCCCHHHHHHHHh------CCCcccc
Confidence 44556677888888743221 2245678899999999999998886 6665433
No 255
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.56 E-value=0.00032 Score=64.88 Aligned_cols=43 Identities=37% Similarity=0.601 Sum_probs=38.4
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+++.+++++|.+|+||||++..|+..+...|..+.+++.|..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 3578999999999999999999999998888888899988655
No 256
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.56 E-value=0.00033 Score=70.72 Aligned_cols=62 Identities=26% Similarity=0.433 Sum_probs=44.7
Q ss_pred hHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhc------CCceEEeeccc-cCchhhhH
Q 012680 48 VRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV-YRPAAIDQ 116 (458)
Q Consensus 48 v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~------G~kVllVd~D~-~rp~a~~~ 116 (458)
....+.++|+++.. ...++.++|.+|+|||++|..++...... +.+|++||++- ++|..+.+
T Consensus 87 g~~~lD~~l~GGi~-------~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 87 GSKELDELLGGGIE-------TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred CCHHHHHHhcCCcc-------CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 34566666665432 46799999999999999999999876542 35899999964 45544433
No 257
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.56 E-value=0.0026 Score=66.97 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=36.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-cCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~~r 110 (458)
+..+++++|.||+||||++.++|..++. .|++|++++++...
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 4578999999999999999999998875 69999999998643
No 258
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.55 E-value=0.0005 Score=64.64 Aligned_cols=115 Identities=24% Similarity=0.322 Sum_probs=77.5
Q ss_pred hHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccc
Q 012680 44 LVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ 123 (458)
Q Consensus 44 ~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~ 123 (458)
+++.=++||...||++.. -+.++++-|..|+|||-++..+++-+-..|++|.+|....---..+.|+..+.-.
T Consensus 9 ii~~gndelDkrLGGGiP-------~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~yd 81 (235)
T COG2874 9 IIKSGNDELDKRLGGGIP-------VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYD 81 (235)
T ss_pred hccCCcHHHHhhccCCCc-------cCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCC
Confidence 456678999999998653 4678999999999999999999999999999999999765444555555433321
Q ss_pred c-------ccceecCC--CccC----hHHHHHhhHHHHHhcCCcEEEEeCCcccc
Q 012680 124 V-------GVPVYTAG--TEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 124 ~-------gv~v~~~~--~~~~----~~~i~~~~l~~~~~~~~DvVIIDtpg~l~ 165 (458)
. .+.+++.. +... ....+...++..+..+.|++|||+-....
T Consensus 82 v~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~ 136 (235)
T COG2874 82 VSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFA 136 (235)
T ss_pred chHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHh
Confidence 1 11222221 1111 11234445555555689999999855443
No 259
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.55 E-value=0.00023 Score=77.89 Aligned_cols=128 Identities=17% Similarity=0.235 Sum_probs=66.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh---cCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK---QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 145 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~---~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l 145 (458)
..|.++++|+.++||||++..|...... ++..-.+.| .+. .....|+.+.........
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD----------~~~-~ErerGiTi~~~~v~~~~-------- 66 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLD----------SMD-LERERGITIKAQAVRLNY-------- 66 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCccccccccccc----------Cch-HHhhcCCcccccEEEEEE--------
Confidence 4678999999999999999999764321 111111111 111 112223332211000000
Q ss_pred HHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hhHhHhhhhheeeeeeceeeeecccCC
Q 012680 146 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 146 ~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
......+|.+.|+||||...+.. ++..... .++.+++|+|+..+ ++...........++ .-+|+||+|..
T Consensus 67 ~~~dg~~~~lnLiDTPGh~dF~~----~v~~sl~--~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~ 139 (600)
T PRK05433 67 KAKDGETYILNLIDTPGHVDFSY----EVSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLP 139 (600)
T ss_pred EccCCCcEEEEEEECCCcHHHHH----HHHHHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence 00011357899999999865322 2222222 34889999999665 222121111222333 34889999974
No 260
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.54 E-value=0.00073 Score=63.27 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=33.7
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
+++.|+.||||||.|..+-.+...-|+++-+|..||.
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPA 42 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPA 42 (273)
T ss_pred EEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHH
Confidence 4566999999999999999999999999999999974
No 261
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.54 E-value=0.00016 Score=75.10 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=34.3
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
+|+.|+|..||||||++.+|+..|..+|++|.+|.-|
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4899999999999999999999999999999997654
No 262
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.53 E-value=0.0002 Score=70.00 Aligned_cols=40 Identities=30% Similarity=0.530 Sum_probs=37.4
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
+|.++|.+||||||++.+|+..|.+.|.+|.+++.|.|..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5889999999999999999999999999999999998876
No 263
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.53 E-value=0.00031 Score=62.48 Aligned_cols=20 Identities=40% Similarity=0.390 Sum_probs=18.1
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
+|+++|.+|+||||+..+|.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~ 21 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALT 21 (164)
T ss_pred EEEEEecCCCCHHHHHHHHh
Confidence 68889999999999998885
No 264
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.53 E-value=0.00018 Score=74.20 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=37.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.+++|.++|.+||||||++.+|...|.++|++|.+|..|..
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 35799999999999999999999999999999999997643
No 265
>PRK09165 replicative DNA helicase; Provisional
Probab=97.52 E-value=0.0019 Score=69.19 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=35.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc---------------CCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ---------------GKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~---------------G~kVllVd~D~~r 110 (458)
+..+++++|.||+||||++.++|...++. |++|+++.+....
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 45789999999999999999999888753 7899999987644
No 266
>PRK05595 replicative DNA helicase; Provisional
Probab=97.52 E-value=0.001 Score=70.28 Aligned_cols=41 Identities=29% Similarity=0.502 Sum_probs=35.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~~ 109 (458)
+..+++++|.||+||||++.++|..++ +.|++|++++++.-
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 456888999999999999999998876 57999999998753
No 267
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.51 E-value=0.0004 Score=66.61 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=22.5
Q ss_pred CCCeEEEeeccccccchhHhhHHHHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANY 93 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~ 93 (458)
.+|.+|+++|.+|+||||++..|...
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999888643
No 268
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.49 E-value=0.00011 Score=68.84 Aligned_cols=43 Identities=37% Similarity=0.584 Sum_probs=39.0
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++|.+|+++|.+|+||||++..|+..|...|..+.++|.|..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 3688999999999999999999999998889989999999765
No 269
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.49 E-value=0.00076 Score=72.53 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccccC
Q 012680 45 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYR 110 (458)
Q Consensus 45 ~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~r 110 (458)
++.-...|.++++++.. +..+++++|.+|+||||++..+++..+++ |.+|++++++-..
T Consensus 13 i~TGI~~LD~~l~GG~p-------~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 13 LPTGIEGFDDITHGGLP-------KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred ccCCchhHHHhhcCCCC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 34455677888865432 46899999999999999999999887777 9999999998543
No 270
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.48 E-value=0.0002 Score=64.24 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=17.8
Q ss_pred EEeeccccccchhHhhHHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLAN 92 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~ 92 (458)
|+++|.+|+||||+...|..
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 67899999999999988864
No 271
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=97.48 E-value=0.0012 Score=64.39 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=70.2
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccccCchhhhHHhhhccccccce
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 128 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v 128 (458)
..|.+++|+- .+..++++.|.+|+|||+++.++|..++.. |++|++++.+.........+ ++...+++.
T Consensus 7 ~~LD~~lgG~--------~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~--la~~s~v~~ 76 (259)
T PF03796_consen 7 PALDRLLGGL--------RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARL--LARLSGVPY 76 (259)
T ss_dssp HHHHHHHSSB---------TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHH--HHHHHTSTH
T ss_pred HHHHHHhcCC--------CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH--HHHhhcchh
Confidence 4566677642 145689999999999999999999999987 69999999986443322221 222233332
Q ss_pred ecCC-CccChH--HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEec
Q 012680 129 YTAG-TEVKPS--QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 192 (458)
Q Consensus 129 ~~~~-~~~~~~--~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda 192 (458)
-... ...++. +.+.++...+ ....+.|.|+|..- . ..+...+..+.... ...-++|||.
T Consensus 77 ~~i~~g~l~~~e~~~~~~~~~~l--~~~~l~i~~~~~~~-~-~~i~~~i~~~~~~~-~~~~~v~IDy 138 (259)
T PF03796_consen 77 NKIRSGDLSDEEFERLQAAAEKL--SDLPLYIEDTPSLT-I-DDIESKIRRLKREG-KKVDVVFIDY 138 (259)
T ss_dssp HHHHCCGCHHHHHHHHHHHHHHH--HTSEEEEEESSS-B-H-HHHHHHHHHHHHHS-TTEEEEEEEE
T ss_pred hhhhccccCHHHHHHHHHHHHHH--hhCcEEEECCCCCC-H-HHHHHHHHHHHhhc-cCCCEEEech
Confidence 1110 111122 2223334443 34567778877642 1 22333333443332 1233667775
No 272
>PRK05748 replicative DNA helicase; Provisional
Probab=97.47 E-value=0.0032 Score=66.67 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=36.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-cCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~~r 110 (458)
+..+++++|.||+||||++.++|...+. .|++|+++.++...
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~ 244 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGA 244 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCH
Confidence 4578999999999999999999998874 69999999987643
No 273
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=97.46 E-value=0.00013 Score=57.50 Aligned_cols=49 Identities=24% Similarity=0.626 Sum_probs=42.8
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHH
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDEL 52 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el 52 (458)
++||+.+|++|||+++++.+|+++++++..+ .+++++.+.+.++++++|
T Consensus 27 l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~---~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 27 LEELEEALIEADVGVEVAEKIIENIKKKLIK---KKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHHHHHHC---TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCHHHHHHHHHHHHHHHhc---ccCCCcHHHHHHHHHHHC
Confidence 4789999999999999999999999996665 456778889999999886
No 274
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.46 E-value=0.00016 Score=79.87 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.4
Q ss_pred EEEeeccccccchhHhhHHHHHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
-|+++|++++||||++..|.+...
T Consensus 26 ~i~iiGh~~~GKSTL~~~Ll~~~~ 49 (632)
T PRK05506 26 RFITCGSVDDGKSTLIGRLLYDSK 49 (632)
T ss_pred EEEEECCCCCChHHHHHHHHHHhC
Confidence 477889999999999999987553
No 275
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.45 E-value=0.00055 Score=68.78 Aligned_cols=59 Identities=27% Similarity=0.477 Sum_probs=42.3
Q ss_pred HHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHh------cCCceEEeeccc-cCchhh
Q 012680 49 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAI 114 (458)
Q Consensus 49 ~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~------~G~kVllVd~D~-~rp~a~ 114 (458)
...+.++||++.. ...++.++|.+|+||||+|..++...+. .+.+|++||++- +++..+
T Consensus 81 ~~~lD~~l~GGi~-------~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl 146 (310)
T TIGR02236 81 SKELDELLGGGIE-------TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI 146 (310)
T ss_pred CHHHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH
Confidence 3455566665432 4689999999999999999999887652 223899999864 455443
No 276
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.45 E-value=0.00088 Score=65.61 Aligned_cols=113 Identities=16% Similarity=0.234 Sum_probs=65.7
Q ss_pred HHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHh------cCCceEEeeccc-cCchhhhHH
Q 012680 45 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQL 117 (458)
Q Consensus 45 ~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~------~G~kVllVd~D~-~rp~a~~~l 117 (458)
+..-.+.|.++|+++.. ...|+=++|.+|+|||.+|..||....- .+.+|++||++- |.+.-+.++
T Consensus 20 i~Tg~~~lD~~L~GGi~-------~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i 92 (256)
T PF08423_consen 20 ISTGCKSLDELLGGGIP-------TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQI 92 (256)
T ss_dssp E--SSHHHHHHTTSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHH
T ss_pred eCCCCHHHHHhhCCCCC-------CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHH
Confidence 34445678888887653 4579999999999999999999875431 256899999875 455444443
Q ss_pred hhhcc------ccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCccc
Q 012680 118 VILGE------QVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 164 (458)
Q Consensus 118 ~~~~~------~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l 164 (458)
...-. ..++.++.......-...+......+...++.+||||+-..+
T Consensus 93 ~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 93 AERFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHHTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred hhccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 21100 112333322111111222333223333467899999986654
No 277
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.45 E-value=0.00029 Score=73.96 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.0
Q ss_pred CeEEEeeccccccchhHhhHHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
...++++|+.++||||++..|.+..
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~ 30 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYET 30 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHc
Confidence 3458888999999999999997544
No 278
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.45 E-value=0.00036 Score=76.29 Aligned_cols=130 Identities=18% Similarity=0.283 Sum_probs=65.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
.|.++++|+.|+||||++..|......-..+ + +.....+.+. .....|+.+......... ....
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~------~-~~~~~~D~~~-~ErerGiTi~~~~v~~~~--------~~~~ 66 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISER------E-MREQVLDSMD-LERERGITIKAQAVRLNY--------KAKD 66 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccc------c-ccccccCCCh-HHHhcCCCeeeeEEEEEE--------EcCC
Confidence 5789999999999999999987643210000 0 1111111110 112234433221000000 0000
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hhHhHhhhhheeeeeeceeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
...+.+.|+||||...+.. ++... ...++.+++|+|+..+ ++...........+. .-+|+||+|..
T Consensus 67 g~~~~l~liDTPG~~dF~~----~v~~~--l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~ 135 (595)
T TIGR01393 67 GETYVLNLIDTPGHVDFSY----EVSRS--LAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLP 135 (595)
T ss_pred CCEEEEEEEECCCcHHHHH----HHHHH--HHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCC
Confidence 1247899999999865322 22222 2235889999999654 222111111222333 34789999974
No 279
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.44 E-value=0.00027 Score=62.50 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=36.4
Q ss_pred CCcEEEEeCCccccccHH-HHHHH-HHHHhhcCcceEEEEEeccchhhHhHhhhhhe-eeeeeceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQIDKA-MMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFN-IEIGITGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~-l~~el-~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~-~~~~i~GvIlnk~D~~ 222 (458)
++++.|+||||....... ....+ ......-.++.+++|+|+.............. ...+ .-+++||+|..
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~ 114 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLP-VVVALNMIDEA 114 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCC-EEEEEehhhhc
Confidence 467999999997543210 00111 11111124688899999865433222222111 1222 34889999974
No 280
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.44 E-value=0.00043 Score=64.42 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.3
Q ss_pred CeEEEeeccccccchhHhhHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLAN 92 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~ 92 (458)
.|.|+++|.+|+||||+...|..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~ 24 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLK 24 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHH
Confidence 46899999999999999988864
No 281
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=97.44 E-value=0.0013 Score=65.44 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.4
Q ss_pred HhhHHHHHHHhcCCceEEeeccccC
Q 012680 86 VSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 86 ~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+++++|.+++++|++|++||+|+..
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4688999999999999999999865
No 282
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.42 E-value=0.00033 Score=69.69 Aligned_cols=117 Identities=17% Similarity=0.265 Sum_probs=63.5
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
-+.++++|.|.|||||+..+|. +.++-+- +| .+. ++...+- ++.
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT------~AkpEvA---~Y------PFT--TK~i~vG-------------------hfe 211 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLT------TAKPEVA---PY------PFT--TKGIHVG-------------------HFE 211 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHh------cCCCccC---CC------Ccc--ccceeEe-------------------eee
Confidence 4688999999999999998885 2222211 01 011 1111111 111
Q ss_pred hcCCcEEEEeCCccccccHHHHHHH--HHHHhhcC-cceEEEEEecc--chhhHhHhhhhh---eeeee-eceeeeeccc
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLN-PTEVLLVVDAM--TGQEAAALVTTF---NIEIG-ITGAILTKLD 220 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el--~~l~~~~~-~~~vllVvda~--~g~~~~~~~~~~---~~~~~-i~GvIlnk~D 220 (458)
.+...+=+|||||.+..+.+-++++ +++.++-. .+-+++++|++ .|.+...+..-| .+.+. ..-+|+||+|
T Consensus 212 ~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D 291 (346)
T COG1084 212 RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKID 291 (346)
T ss_pred cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 1345688999999998643322222 12211111 26778999983 444444433322 22233 3458999999
Q ss_pred CC
Q 012680 221 GD 222 (458)
Q Consensus 221 ~~ 222 (458)
..
T Consensus 292 ~~ 293 (346)
T COG1084 292 IA 293 (346)
T ss_pred cc
Confidence 54
No 283
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.42 E-value=0.00045 Score=72.42 Aligned_cols=115 Identities=22% Similarity=0.363 Sum_probs=59.2
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 152 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~ 152 (458)
|+++|.+|+||||+...|. |.+..+++.. |+... ... +. .+.+.+
T Consensus 2 i~ivG~~nvGKStL~n~l~------~~~~~~v~~~---~g~t~-------d~~---~~----------------~~~~~~ 46 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLT------GKRDAIVSDT---PGVTR-------DRK---YG----------------DAEWGG 46 (429)
T ss_pred EEEECCCCCCHHHHHHHHh------CCCcceecCC---CCccc-------Cce---EE----------------EEEECC
Confidence 7889999999999998885 3333333211 11100 000 00 001234
Q ss_pred CcEEEEeCCccccccHHHHHHHHH--HHhhcCcceEEEEEeccchh--hHhHhhhhhee-eeeeceeeeecccCCC
Q 012680 153 VDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGDS 223 (458)
Q Consensus 153 ~DvVIIDtpg~l~~d~~l~~el~~--l~~~~~~~~vllVvda~~g~--~~~~~~~~~~~-~~~i~GvIlnk~D~~~ 223 (458)
..+.|+||||.......+...+.. ....-.++.+++|+|+..+. .....+..+.. ..+ .-+|+||+|...
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~ 121 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDGKK 121 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEEEECccCCc
Confidence 569999999974322222222211 11122358899999996542 11122222211 122 337899999753
No 284
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.42 E-value=0.00075 Score=65.19 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=32.8
Q ss_pred eEEEeeccccccchhHhhHHHHHHHh------------cCCceEEeeccccC
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKK------------QGKSCMLVAGDVYR 110 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~------------~G~kVllVd~D~~r 110 (458)
.+.+++|++|+||||++..+|...+. .+.+|++++++-..
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 36788999999999999999987652 46789999987543
No 285
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.41 E-value=0.00051 Score=77.37 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=30.4
Q ss_pred eEEEeecc-ccccchhHhhHHHHHHHhcCCceEEee
Q 012680 71 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA 105 (458)
Q Consensus 71 ~iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd 105 (458)
+.++|+|. .|+|||.+++.|+.+++..|.+|.++.
T Consensus 28 ~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~y~K 63 (817)
T PLN02974 28 PAFAVWGANTAVGKTLVSAGLAAAAASRRSPVLYVK 63 (817)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 45677776 999999999999999999999888765
No 286
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.40 E-value=0.00051 Score=72.23 Aligned_cols=116 Identities=22% Similarity=0.352 Sum_probs=60.9
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
.|+++|.+|+||||+...|. |.+...++-. |+.. . ..... .+...
T Consensus 3 ~I~ivG~~~vGKStL~n~l~------~~~~~~v~~~---~~~t-------~----d~~~~---------------~~~~~ 47 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLT------GKRDAIVADT---PGVT-------R----DRIYG---------------EAEWL 47 (435)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeeCCC---CCCc-------c----cceEE---------------EEEEC
Confidence 57888999999999998885 4444333211 1100 0 00000 00123
Q ss_pred CCcEEEEeCCccccccHHHHHHHHH--HHhhcCcceEEEEEeccchhhH--hHhhhhhee-eeeeceeeeecccCCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTGQEA--AALVTTFNI-EIGITGAILTKLDGDS 223 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~--l~~~~~~~~vllVvda~~g~~~--~~~~~~~~~-~~~i~GvIlnk~D~~~ 223 (458)
++++.|+||||....+......+.. ....-.+|.+++|+|+..+... ......+.. ..+ .-+|+||+|...
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D~~~ 123 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVDGPD 123 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCcc
Confidence 5789999999986522212222221 1122346889999999654211 112211111 222 347899999643
No 287
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.39 E-value=0.00086 Score=65.82 Aligned_cols=120 Identities=17% Similarity=0.272 Sum_probs=67.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcc----------ccccceecCCCccChH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE----------QVGVPVYTAGTEVKPS 138 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~----------~~gv~v~~~~~~~~~~ 138 (458)
+-.+.+++|--|+||||+...++ ..+.|+|++++-...--...++....... ..+--|++.....+..
T Consensus 56 rIPvtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gv 133 (391)
T KOG2743|consen 56 RIPVTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGV 133 (391)
T ss_pred ccceEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHH
Confidence 34588899999999999987764 35679999988765332222221110000 0111222222222333
Q ss_pred HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHH---HHHHhhcCcceEEEEEecc
Q 012680 139 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAM 193 (458)
Q Consensus 139 ~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el---~~l~~~~~~~~vllVvda~ 193 (458)
..+.+.++ +...||+|+++|.|.... +++..-. ..+.+-+.-|.++-|||+.
T Consensus 134 raie~lvq--kkGkfD~IllETTGlAnP-aPia~~Fw~dd~l~sdVkLDGIVTvvD~K 188 (391)
T KOG2743|consen 134 RAIENLVQ--KKGKFDHILLETTGLANP-APIASMFWLDDELGSDVKLDGIVTVVDAK 188 (391)
T ss_pred HHHHHHHh--cCCCcceEEEeccCCCCc-HHHHHHHhhhhhhcCceeeeeEEEEEehh
Confidence 33444444 346899999999887542 2222111 2333444558889999984
No 288
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.0006 Score=63.79 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=34.3
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
..|+++|.|||||||++..||..|.+++++|..+..|
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 3688999999999999999999999999999988876
No 289
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.39 E-value=0.00014 Score=67.21 Aligned_cols=39 Identities=38% Similarity=0.530 Sum_probs=35.6
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+|.++|.+||||||+|..|+..+...|.++.++..|-|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 578999999999999999999999999999999998654
No 290
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.39 E-value=0.0011 Score=60.90 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.7
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
....|+++|.+|+||||+...|.
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~ 39 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALT 39 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh
Confidence 45578899999999999998775
No 291
>PRK09866 hypothetical protein; Provisional
Probab=97.39 E-value=0.0016 Score=70.45 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=39.2
Q ss_pred CCcEEEEeCCcccccc-HHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhheeee--eeceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQID-KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEI--GITGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d-~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~--~i~GvIlnk~D~~ 222 (458)
.+.+|||||||..... ..+...+.. .+-..|-+++|+|+... ......+......- ...-+|+||+|..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~e--qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQ--QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHH--HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 4789999999997532 222222222 23345899999999542 22222222222111 1344799999975
No 292
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.39 E-value=0.00029 Score=76.93 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=36.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
++++.++|..||||||++.+|...|.++|++|.+|..|.
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 579999999999999999999999999999999999843
No 293
>PRK05636 replicative DNA helicase; Provisional
Probab=97.38 E-value=0.0039 Score=66.84 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=36.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeeccccCc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRP 111 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~~rp 111 (458)
+..+++++|.+|+||||++.++|...+ +.|++|+++++..-..
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ 307 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKS 307 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHH
Confidence 457889999999999999999998877 4689999998876443
No 294
>PRK05439 pantothenate kinase; Provisional
Probab=97.38 E-value=0.00034 Score=70.15 Aligned_cols=43 Identities=30% Similarity=0.387 Sum_probs=37.9
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHh--cCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~--~G~kVllVd~D~~r 110 (458)
+.|.+|.|+|.+||||||+|..|+..|.+ .|.+|.++..|-|-
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 46889999999999999999999998876 47899999999764
No 295
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.38 E-value=0.00013 Score=65.49 Aligned_cols=40 Identities=38% Similarity=0.630 Sum_probs=35.7
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
+++++|.+||||||++..|+..+...|.++.+++.|..+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4788999999999999999999998899999899886554
No 296
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.37 E-value=0.00021 Score=63.46 Aligned_cols=37 Identities=35% Similarity=0.457 Sum_probs=31.5
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceE-Eeeccc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM-LVAGDV 108 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVl-lVd~D~ 108 (458)
+|+++|..||||||++..|..+|.++|++|. +.+.|.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 7899999999999999999999999999998 677776
No 297
>PF13245 AAA_19: Part of AAA domain
Probab=97.36 E-value=0.00024 Score=56.28 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=31.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhc----CCceEEeecc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQ----GKSCMLVAGD 107 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~----G~kVllVd~D 107 (458)
..++++.|++|+||||++.+++.++... +.+|+++...
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 4578889999999999999988888765 8899988643
No 298
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.34 E-value=0.00093 Score=66.54 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=30.1
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+++|+++|.+||||||+|..|+..+. ...+++.|.++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r 38 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLR 38 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHH
Confidence 56899999999999999999987662 45778888654
No 299
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.34 E-value=0.0015 Score=72.83 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=68.0
Q ss_pred hHHHhHHHHHHhhc-cceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc-cCchhhhHHhhhc
Q 012680 44 LVKIVRDELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILG 121 (458)
Q Consensus 44 ~~~~v~~el~~llg-~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~-~rp~a~~~l~~~~ 121 (458)
.+..-..+|..+|| ++.. +.+++.+.|.+|+||||++..++....+.|.+|++||+.- ++|.. +
T Consensus 40 ~isTGi~~LD~lLg~GGip-------~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~-------A 105 (790)
T PRK09519 40 VIPTGSIALDVALGIGGLP-------RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDY-------A 105 (790)
T ss_pred eecCCcHHHHHhhcCCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHH-------H
Confidence 44556678888887 5432 4689999999999999999999988888999999999863 23222 2
Q ss_pred cccccce---ecCCCccChHHHHHhhHHH-HHhcCCcEEEEeCCccc
Q 012680 122 EQVGVPV---YTAGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRL 164 (458)
Q Consensus 122 ~~~gv~v---~~~~~~~~~~~i~~~~l~~-~~~~~~DvVIIDtpg~l 164 (458)
+..|++. +.. ...+.+.+...+.. +....+++||||+-..+
T Consensus 106 ~~lGvDl~~llv~--~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 106 KKLGVDTDSLLVS--QPDTGEQALEIADMLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHcCCChhHeEEe--cCCCHHHHHHHHHHHhhcCCCeEEEEcchhhh
Confidence 2233321 111 11122323222333 33457999999985543
No 300
>PF13479 AAA_24: AAA domain
Probab=97.33 E-value=0.00043 Score=65.84 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=48.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.+..+++.|.+|+||||++..+ -+++++|+|--... +..+. +.+.+... ..+.+.+.+..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~----~~~~~---~~~~i~i~----s~~~~~~~~~~l 62 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDS----LKFLD---DGDVIPIT----SWEDFLEALDEL 62 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccc----hhhhc---CCCeeCcC----CHHHHHHHHHHH
Confidence 3567889999999999999777 68999999843111 11111 22233222 223334444433
Q ss_pred --HhcCCcEEEEeCCccc
Q 012680 149 --KKKNVDVVIVDTAGRL 164 (458)
Q Consensus 149 --~~~~~DvVIIDtpg~l 164 (458)
....||.|+||+...+
T Consensus 63 ~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 63 EEDEADYDTIVIDSISWL 80 (213)
T ss_pred HhccCCCCEEEEECHHHH
Confidence 2368999999997765
No 301
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.33 E-value=0.00097 Score=64.81 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=33.1
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
..+++.|++|+|||+++.++|.++.+.|++|+++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 468899999999999999999999999999998864
No 302
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.32 E-value=0.00073 Score=60.70 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=17.4
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+|+||||+...|.
T Consensus 3 v~ivG~~~~GKStl~~~l~ 21 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAIS 21 (170)
T ss_pred eEEECCCCCCHHHHHHHHh
Confidence 7889999999999998885
No 303
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.32 E-value=0.0002 Score=61.04 Aligned_cols=32 Identities=38% Similarity=0.594 Sum_probs=25.4
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+|+++|++||||||+|..||..+ |..+ ++.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~--i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV--ISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE--EEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE--EEecc
Confidence 68899999999999999998766 5544 45553
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.32 E-value=0.00041 Score=62.59 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=17.5
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|..++||||+..+|.
T Consensus 1 V~v~G~~ssGKSTliNaLl 19 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALL 19 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHH
Confidence 6788999999999999996
No 305
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.31 E-value=0.00048 Score=71.17 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=76.3
Q ss_pred CeEEEeeccccccchhHhhHHHHHHH--hcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~--~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
-|.|++..+---||||+.-+|...-. +.+..|.=--.| -..+.+..|+.++...+..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMD---------SnDlEkERGITILaKnTav------------ 63 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMD---------SNDLEKERGITILAKNTAV------------ 63 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcC---------ccchhhhcCcEEEecccee------------
Confidence 46888899999999999988854321 111122100011 1123455677777654322
Q ss_pred HHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hhHhHhhhhheeeeeeceeeeecccCC
Q 012680 148 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 148 ~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
.|+++.+.||||||...+- .|...+...+ |.++|+|||..| |.-.-.-+++...+.. -||+||+|..
T Consensus 64 -~~~~~~INIvDTPGHADFG----GEVERvl~MV--DgvlLlVDA~EGpMPQTrFVlkKAl~~gL~P-IVVvNKiDrp 133 (603)
T COG1217 64 -NYNGTRINIVDTPGHADFG----GEVERVLSMV--DGVLLLVDASEGPMPQTRFVLKKALALGLKP-IVVINKIDRP 133 (603)
T ss_pred -ecCCeEEEEecCCCcCCcc----chhhhhhhhc--ceEEEEEEcccCCCCchhhhHHHHHHcCCCc-EEEEeCCCCC
Confidence 3578999999999987543 4444444443 899999999544 4433333445444433 3899999976
No 306
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.30 E-value=0.00038 Score=68.54 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=85.8
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
--+++.|.|.+||||++..+. |.||..+..-+.. +... ...+++.
T Consensus 73 L~vavIG~PNvGKStLtN~mi------g~kv~~vS~K~~T--------Tr~~--ilgi~ts------------------- 117 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMI------GQKVSAVSRKVHT--------TRHR--ILGIITS------------------- 117 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhh------CCccccccccccc--------eeee--eeEEEec-------------------
Confidence 467788999999999999987 8888866533211 1111 1223332
Q ss_pred cCCcEEEEeCCcccccc-----HHHHHHHHHH-HhhcCcceEEEEEeccch-----hhHhHhhhhheeeeeec-eeeeec
Q 012680 151 KNVDVVIVDTAGRLQID-----KAMMDELKDV-KRVLNPTEVLLVVDAMTG-----QEAAALVTTFNIEIGIT-GAILTK 218 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d-----~~l~~el~~l-~~~~~~~~vllVvda~~g-----~~~~~~~~~~~~~~~i~-GvIlnk 218 (458)
+.+.+|++||||.+... -..+.-+.+. .++-.+|-+++|+|+... -..+.....+. .+. -+|+||
T Consensus 118 ~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys---~ips~lvmnk 194 (379)
T KOG1423|consen 118 GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS---KIPSILVMNK 194 (379)
T ss_pred CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh---cCCceeeccc
Confidence 57899999999987531 1111211111 222345888888898532 12333334343 232 268899
Q ss_pred ccCCCCCcceeeeeec-----------------cCCceeEeecCCccccCCCCCcchhhhhhhccc
Q 012680 219 LDGDSRGGAALSVKEV-----------------SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 219 ~D~~~~~g~~~~i~~~-----------------~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~ 267 (458)
+|.-..-..++...+. ...|= ...-+....|.-|....++|.+-|.|
T Consensus 195 id~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~--~~~~~~~~gwshfe~vF~vSaL~G~G 258 (379)
T KOG1423|consen 195 IDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPS--DEKWRTICGWSHFERVFMVSALYGEG 258 (379)
T ss_pred hhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCc--ccccccccCcccceeEEEEecccccC
Confidence 9865333222221111 11111 11112334455677777788888877
No 307
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.30 E-value=0.00092 Score=62.74 Aligned_cols=112 Identities=26% Similarity=0.306 Sum_probs=57.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
.++.++.|.+|+||||+...++..+...|++|+++..- .. +...+. +..++++............... -....
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT--~~-Aa~~L~---~~~~~~a~Ti~~~l~~~~~~~~-~~~~~ 90 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT--NK-AAKELR---EKTGIEAQTIHSFLYRIPNGDD-EGRPE 90 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS--HH-HHHHHH---HHHTS-EEEHHHHTTEECCEEC-CSSCC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc--HH-HHHHHH---HhhCcchhhHHHHHhcCCcccc-ccccc
Confidence 45888999999999999999999999999999988633 22 222222 2223322221000000000000 00000
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCc--ceEEEEEecc
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP--TEVLLVVDAM 193 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~--~~vllVvda~ 193 (458)
...++++|||=++.+. ...+ ..+...+.. ..+++|-|..
T Consensus 91 ~~~~~vliVDEasmv~--~~~~---~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVD--SRQL---ARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp -TSTSEEEESSGGG-B--HHHH---HHHHHHS-T-T-EEEEEE-TT
T ss_pred CCcccEEEEecccccC--HHHH---HHHHHHHHhcCCEEEEECCcc
Confidence 2467899999998875 2223 333333332 4567777763
No 308
>PRK08506 replicative DNA helicase; Provisional
Probab=97.30 E-value=0.0027 Score=67.60 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=37.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+..+++++|.||+|||+++.++|...++.|++|++++++.-.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~ 232 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPA 232 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCH
Confidence 457899999999999999999999988889999999988543
No 309
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.30 E-value=0.00053 Score=65.52 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=50.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.|..+++.|++|+||||++..|+ .++++++.|-.- ..+....++++...+. ..+.+.+.+.+..+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~-------~~l~g~~~~~v~~~d~-~~~~~~~~d~l~~~ 75 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSS-------KVLIGDENVDIADHDD-MPPIQAMVEFYVMQ 75 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccc-------hhccCCCCCceeecCC-CCCHHHHHHHHHHH
Confidence 36779999999999999998774 467889988421 1112223444444322 22333333444433
Q ss_pred H--hcCCcEEEEeCCccc
Q 012680 149 K--KKNVDVVIVDTAGRL 164 (458)
Q Consensus 149 ~--~~~~DvVIIDtpg~l 164 (458)
. ...||.|+||+...+
T Consensus 76 ~~~~~~ydtVVIDsI~~l 93 (220)
T TIGR01618 76 NIQAVKYDNIVIDNISAL 93 (220)
T ss_pred HhccccCCEEEEecHHHH
Confidence 2 256999999998765
No 310
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.30 E-value=0.0003 Score=66.42 Aligned_cols=41 Identities=34% Similarity=0.518 Sum_probs=35.3
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.++.+|.++|.+||||||++..|+..+ .+..+.+++.|.|.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 367899999999999999999999887 45678899998753
No 311
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.29 E-value=0.0019 Score=65.68 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=34.5
Q ss_pred EEeeccccccchhHhhHHHHHHH-hcCCceEEeeccccC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYR 110 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~~r 110 (458)
++++|.+|+||||++..|+.+|. ..|++|.+++.|-+=
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 67899999999999999999998 689999999998654
No 312
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.29 E-value=0.00061 Score=60.53 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=37.7
Q ss_pred EEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhH--hHhhhhheeeeeeceeeeecccCC
Q 012680 156 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 156 VIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~--~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
.+|||||-.-.+..+...|... ...++-+++|.|+...... -..+..|+. ++.| |+||+|..
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~t--a~dad~V~ll~dat~~~~~~pP~fa~~f~~--pvIG-VITK~Dl~ 102 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVT--AQDADVVLLLQDATEPRSVFPPGFASMFNK--PVIG-VITKIDLP 102 (143)
T ss_pred cEEECChhheeCHHHHHHHHHH--HhhCCEEEEEecCCCCCccCCchhhcccCC--CEEE-EEECccCc
Confidence 4599999876555555555333 2356888999999654322 223344542 3333 67999977
No 313
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.28 E-value=0.0014 Score=69.80 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=61.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.+..|+++|.+|+||||+...|. |.....+.. .|+.. .+.+.. .+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~------~~~~~~~s~---~~gtT-----------~d~~~~---------------~~ 254 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA------GEERSVVDD---VAGTT-----------VDPVDS---------------LI 254 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCcccccC---CCCcc-----------CCcceE---------------EE
Confidence 35678889999999999998885 222221110 01110 000000 00
Q ss_pred HhcCCcEEEEeCCccccc-----cHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhhe-eeeeeceeeeeccc
Q 012680 149 KKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLD 220 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~-----d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlnk~D 220 (458)
...+..+.|+||||.... ..+....+......-.++.+++|+|+..+ ......+.... ...+ .-+|+||+|
T Consensus 255 ~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~p-iIiV~NK~D 333 (472)
T PRK03003 255 ELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRA-LVLAFNKWD 333 (472)
T ss_pred EECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 013456789999995211 12223333333333456889999998644 22222222222 1222 348889999
Q ss_pred CC
Q 012680 221 GD 222 (458)
Q Consensus 221 ~~ 222 (458)
..
T Consensus 334 l~ 335 (472)
T PRK03003 334 LV 335 (472)
T ss_pred cC
Confidence 74
No 314
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.28 E-value=0.00074 Score=75.06 Aligned_cols=56 Identities=30% Similarity=0.498 Sum_probs=41.3
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcccccccee
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 129 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~ 129 (458)
-..+|.|.||+||||+.+.|.+.|...|++|++.+ |...|+|.+..--...++.+.
T Consensus 686 dy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLts---yThsAVDNILiKL~~~~i~~l 741 (1100)
T KOG1805|consen 686 DYALILGMPGTGKTTTISLLIKILVALGKKVLLTS---YTHSAVDNILIKLKGFGIYIL 741 (1100)
T ss_pred chheeecCCCCCchhhHHHHHHHHHHcCCeEEEEe---hhhHHHHHHHHHHhccCccee
Confidence 35677899999999999999999999999999875 555556655333333344333
No 315
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.28 E-value=0.00027 Score=66.01 Aligned_cols=39 Identities=36% Similarity=0.552 Sum_probs=33.8
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCc----eEEeeccccC
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKS----CMLVAGDVYR 110 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~k----VllVd~D~~r 110 (458)
||.|+|.+||||||+|..|+..|.+.|.. +.++..|.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 68899999999999999999999998877 6677777654
No 316
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.28 E-value=0.00085 Score=57.74 Aligned_cols=41 Identities=32% Similarity=0.464 Sum_probs=35.2
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
...++++|++|+||||++..++..+...+.++..+++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 45788999999999999999999988778889888876543
No 317
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.27 E-value=0.00037 Score=63.27 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=35.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
+++.++|.+|+||||++.+|+..|..+|++|.++..|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 589999999999999999999999999999999887654
No 318
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.27 E-value=0.0033 Score=63.17 Aligned_cols=43 Identities=35% Similarity=0.485 Sum_probs=38.1
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
..| .++++|+.-+||||++.-|..|..+.|++++.++.|+..+
T Consensus 102 ~GP-rv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~ 144 (415)
T KOG2749|consen 102 YGP-RVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG 144 (415)
T ss_pred cCC-EEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence 345 5678899999999999999999999999999999999764
No 319
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.27 E-value=0.00084 Score=71.53 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=60.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
+..|+++|.+||||||+...|+ |.+...++ + .|+. . ...+... +.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~------~~~~~~v~-~--~~gv-------T----~d~~~~~---------------~~ 82 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRIL------GRREAVVE-D--VPGV-------T----RDRVSYD---------------AE 82 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh------CcCccccc-C--CCCC-------C----EeeEEEE---------------EE
Confidence 3468999999999999998886 33322221 1 1110 0 0000000 01
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHH--HHhhcCcceEEEEEeccchhh--HhHhhhhhee-eeeeceeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTGQE--AAALVTTFNI-EIGITGAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~--l~~~~~~~~vllVvda~~g~~--~~~~~~~~~~-~~~i~GvIlnk~D~~ 222 (458)
..+..+.|+||||.......+...+.. ....-.+|.+++|+|+..+.. ....+..+.. ..+ .-+|+||+|..
T Consensus 83 ~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~Dl~ 159 (472)
T PRK03003 83 WNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKP-VILAANKVDDE 159 (472)
T ss_pred ECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCC
Confidence 235678999999965321112111211 112224689999999965421 1222222221 222 34789999975
No 320
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.26 E-value=0.0014 Score=66.70 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=43.1
Q ss_pred hHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHh------cCCceEEeeccc-cCchhhhHH
Q 012680 48 VRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQL 117 (458)
Q Consensus 48 v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~------~G~kVllVd~D~-~rp~a~~~l 117 (458)
-..+|..+|+++.. ...++.++|.+|+|||++|..|+..... .+.+|++||++- |+|.-+.++
T Consensus 108 G~~~LD~lL~GG~~-------~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qi 177 (342)
T PLN03186 108 GSRELDKILEGGIE-------TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQI 177 (342)
T ss_pred CCHHHHHhhcCCCc-------CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHH
Confidence 34456666664432 3578999999999999999999865431 124899999864 566544443
No 321
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.26 E-value=0.0013 Score=69.07 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=60.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.+..++++|.+|+||||+...|. |....++.-. ++. . .+.+.. . +
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll------~~~~~~~~~~---~gt-------t----~~~~~~--~-------------~ 216 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALL------GEERVIVSDI---AGT-------T----RDSIDT--P-------------F 216 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCceeecCC---CCc-------e----EEEEEE--E-------------E
Confidence 45678899999999999998875 3322222110 000 0 000000 0 0
Q ss_pred HhcCCcEEEEeCCccccc---c--HHHHHHHHHHHhhcCcceEEEEEeccchh--hHhHhhhhhe-eeeeeceeeeeccc
Q 012680 149 KKKNVDVVIVDTAGRLQI---D--KAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLD 220 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~---d--~~l~~el~~l~~~~~~~~vllVvda~~g~--~~~~~~~~~~-~~~~i~GvIlnk~D 220 (458)
...+.++.++||||.... + .+.......+...-.+|.+++|+|+..+. .....+.... ...+ .-+++||+|
T Consensus 217 ~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~D 295 (435)
T PRK00093 217 ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWD 295 (435)
T ss_pred EECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECcc
Confidence 013567999999996321 1 11111122222333468899999996442 1122222111 1222 348999999
Q ss_pred CC
Q 012680 221 GD 222 (458)
Q Consensus 221 ~~ 222 (458)
..
T Consensus 296 l~ 297 (435)
T PRK00093 296 LV 297 (435)
T ss_pred CC
Confidence 75
No 322
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.26 E-value=0.0019 Score=59.32 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=30.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
+.+.+++| .|.||||.|..+|...+.+|++|+++-+
T Consensus 6 Gli~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 6 GIIIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred cEEEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 44555555 9999999999999999999999988754
No 323
>PRK06761 hypothetical protein; Provisional
Probab=97.26 E-value=0.002 Score=63.83 Aligned_cols=42 Identities=31% Similarity=0.618 Sum_probs=34.9
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEE-eeccccCc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYRP 111 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVll-Vd~D~~rp 111 (458)
+++|+++|++||||||++..|+..|...|.+|.. .+.|..+|
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p 45 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHP 45 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCc
Confidence 4589999999999999999999999888888875 55665444
No 324
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.25 E-value=0.0015 Score=67.86 Aligned_cols=144 Identities=19% Similarity=0.234 Sum_probs=77.4
Q ss_pred HHHhHHHHHHhh-ccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccc
Q 012680 45 VKIVRDELVKLM-GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ 123 (458)
Q Consensus 45 ~~~v~~el~~ll-g~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~ 123 (458)
+.-+.+++.+.+ ..+... ......|--++++|.|.+||||+..+|. |..-++++.- |+..
T Consensus 153 i~dLld~v~~~l~~~e~~~-~~~~~~~ikiaiiGrPNvGKSsLiN~il------geeR~Iv~~~---aGTT--------- 213 (444)
T COG1160 153 IGDLLDAVLELLPPDEEEE-EEEETDPIKIAIIGRPNVGKSSLINAIL------GEERVIVSDI---AGTT--------- 213 (444)
T ss_pred HHHHHHHHHhhcCCccccc-ccccCCceEEEEEeCCCCCchHHHHHhc------cCceEEecCC---CCcc---------
Confidence 556777777776 322111 1111246778999999999999998886 4433333311 0110
Q ss_pred cccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCccccc---c--HHHHHHHHHHHhhcCcceEEEEEeccch--h
Q 012680 124 VGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI---D--KAMMDELKDVKRVLNPTEVLLVVDAMTG--Q 196 (458)
Q Consensus 124 ~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~---d--~~l~~el~~l~~~~~~~~vllVvda~~g--~ 196 (458)
.+.+.. .+.+++..+++|||+|.=.. . .+..+-.+.+...-.++-+++|+|+..+ +
T Consensus 214 --RD~I~~---------------~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~ 276 (444)
T COG1160 214 --RDSIDI---------------EFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISE 276 (444)
T ss_pred --ccceee---------------eEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchH
Confidence 000000 00124667999999986431 1 1222233334444446888999999654 2
Q ss_pred hHhHhhhhheeeeeeceeeeecccCCCC
Q 012680 197 EAAALVTTFNIEIGITGAILTKLDGDSR 224 (458)
Q Consensus 197 ~~~~~~~~~~~~~~i~GvIlnk~D~~~~ 224 (458)
...+.+....+.-.-.-|++||+|.-..
T Consensus 277 qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 277 QDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred HHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 2333333222222223488999997543
No 325
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.23 E-value=0.0019 Score=67.79 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.0
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+..++++|.+|+||||++..|.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~ 193 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALL 193 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4568888999999999998875
No 326
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.21 E-value=0.00047 Score=60.39 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=17.1
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+|+||||+...|.
T Consensus 3 i~~~G~~~~GKStl~~~l~ 21 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFV 21 (159)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7789999999999998874
No 327
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.21 E-value=0.0016 Score=66.81 Aligned_cols=116 Identities=19% Similarity=0.276 Sum_probs=60.0
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
..|+++|.+++||||+...|. |..+. + .|...+ +.+. ... .+.. .
T Consensus 190 ~~ValvG~~NvGKSSLln~L~------~~~~~-v-~~~~~t-T~d~---~~~-----~i~~------------------~ 234 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALT------GADVY-A-ADQLFA-TLDP---TTR-----RLDL------------------P 234 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCcee-e-ccCCcc-ccCC---EEE-----EEEe------------------C
Confidence 568888999999999998886 33322 1 111000 0010 000 0000 0
Q ss_pred cCCcEEEEeCCccccc-cHHHHHHHHH-HHhhcCcceEEEEEeccchhh--Hh----Hhhhhhee-eeeeceeeeecccC
Q 012680 151 KNVDVVIVDTAGRLQI-DKAMMDELKD-VKRVLNPTEVLLVVDAMTGQE--AA----ALVTTFNI-EIGITGAILTKLDG 221 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~-d~~l~~el~~-l~~~~~~~~vllVvda~~g~~--~~----~~~~~~~~-~~~i~GvIlnk~D~ 221 (458)
.+..+.|+||||.... ...+...... +.....+|.+++|+|++.... .. ........ ..+ .-+|+||+|.
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl 313 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDL 313 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecC
Confidence 2457999999997431 2222222221 222334688999999854321 11 12222211 122 3489999996
Q ss_pred C
Q 012680 222 D 222 (458)
Q Consensus 222 ~ 222 (458)
.
T Consensus 314 ~ 314 (351)
T TIGR03156 314 L 314 (351)
T ss_pred C
Confidence 4
No 328
>PRK06749 replicative DNA helicase; Provisional
Probab=97.19 E-value=0.0034 Score=66.02 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=81.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecC--C-CccChH--HHHHh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA--G-TEVKPS--QIAKQ 143 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~--~-~~~~~~--~i~~~ 143 (458)
+...+++.|.||.|||+++.++|...++.|++|++++++.........+ .+...+++.... + ...+.. ..+..
T Consensus 185 ~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R~--ls~~~~i~~~~l~~~~~~l~~~e~~~~~~ 262 (428)
T PRK06749 185 EGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRM--ASCVGEVSGGRLKNPKHRFAMEDWEKVSK 262 (428)
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHH--HHhccCCCHHHHhcCcccCCHHHHHHHHH
Confidence 4578999999999999999999999998899999999886443322222 222223332111 1 011222 22344
Q ss_pred hHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEec---cc---h------hh---HhHhhhhheee
Q 012680 144 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---MT---G------QE---AAALVTTFNIE 208 (458)
Q Consensus 144 ~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda---~~---g------~~---~~~~~~~~~~~ 208 (458)
++..+ .+..+-|.|+|+.. .+ .+...++.+........-++|||. .. . +. ..+.++.+..+
T Consensus 263 a~~~l--~~~~i~i~d~~~~t-~~-~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~~~~~r~~ei~~isr~LK~lAke 338 (428)
T PRK06749 263 AFAEI--GELPLEIYDNAGVT-VQ-DIWMQTRKLKRKHGDKKILIIVDYLQLITGDPKHKGNRFQEISEISRKLKLLARE 338 (428)
T ss_pred HHHHH--hcCCEEEECCCCCC-HH-HHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55444 34667888887753 21 233444444443221223777876 11 0 11 11222345556
Q ss_pred eeeceeeeecccC
Q 012680 209 IGITGAILTKLDG 221 (458)
Q Consensus 209 ~~i~GvIlnk~D~ 221 (458)
+++.-+++.++..
T Consensus 339 l~vpVi~lsQLnR 351 (428)
T PRK06749 339 LNVCVVALSQLSR 351 (428)
T ss_pred hCCeEEEEEecCc
Confidence 6666666666653
No 329
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.17 E-value=0.0011 Score=61.29 Aligned_cols=86 Identities=28% Similarity=0.492 Sum_probs=46.5
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...++++|+.|+|||++-..|.. |..+. ++.. . ..+...... .
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~-----~~~~~----------T~tS---~--e~n~~~~~~-----------------~ 45 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVN-----GKTVP----------TVTS---M--ENNIAYNVN-----------------N 45 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHH-----SS-------------B------S--SEEEECCGS-----------------S
T ss_pred CceEEEEcCCCCCHHHHHHHHhc-----CCcCC----------eecc---c--cCCceEEee-----------------c
Confidence 35789999999999999988864 21111 1111 1 111111100 0
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 195 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g 195 (458)
.....+-|||+||....-..+...+.... ..-.+++|||+.+.
T Consensus 46 ~~~~~~~lvD~PGH~rlr~~~~~~~~~~~---~~k~IIfvvDSs~~ 88 (181)
T PF09439_consen 46 SKGKKLRLVDIPGHPRLRSKLLDELKYLS---NAKGIIFVVDSSTD 88 (181)
T ss_dssp TCGTCECEEEETT-HCCCHHHHHHHHHHG---GEEEEEEEEETTTH
T ss_pred CCCCEEEEEECCCcHHHHHHHHHhhhchh---hCCEEEEEEeCccc
Confidence 12346899999998665444444432222 24789999999654
No 330
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.16 E-value=0.00063 Score=65.35 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=36.5
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEE-eeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVll-Vd~D~~r 110 (458)
.+|.++.++|++||||||++..|+..+...+..+.+ +..|.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 468899999999999999999999999987766666 7777554
No 331
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.15 E-value=0.00085 Score=75.23 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.2
Q ss_pred CCCeEEEeeccccccchhHhhHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKL 90 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~L 90 (458)
.+|.+|++.|+.++||||+...|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~L 310 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAI 310 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 35678999999999999999887
No 332
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.15 E-value=0.00087 Score=70.45 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=21.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
+...++++|+.++||||++..|...+
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~ 31 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKC 31 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHh
Confidence 34568889999999999999997644
No 333
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.14 E-value=0.0017 Score=58.25 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=18.1
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
.|+++|.+|+||||+...|.
T Consensus 2 ~i~~~G~~~~GKssli~~l~ 21 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT 21 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 58899999999999998885
No 334
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.13 E-value=0.0023 Score=71.67 Aligned_cols=117 Identities=16% Similarity=0.138 Sum_probs=61.8
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...|+++|.+|+||||+...|. +.+..+++ .+.+...+ .+.. .+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~------~~~~~~v~--~~~gtT~d------------~~~~---------------~~~ 494 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLT------HEERAVVN--DLAGTTRD------------PVDE---------------IVE 494 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CccccccC--CCCCCCcC------------ccee---------------EEE
Confidence 4578888999999999998885 33322222 01000100 0000 001
Q ss_pred hcCCcEEEEeCCccccc-----cHHHHHHHHHHHhhcCcceEEEEEeccchh--hHhHhhhhhe-eeeeeceeeeecccC
Q 012680 150 KKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDG 221 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~-----d~~l~~el~~l~~~~~~~~vllVvda~~g~--~~~~~~~~~~-~~~~i~GvIlnk~D~ 221 (458)
..+.++.|+||||.... ..+....+......-.++.+++|+|+..+. .......... ...+ .-+|+||+|.
T Consensus 495 ~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~p-iIiV~NK~DL 573 (712)
T PRK09518 495 IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRA-LVLVFNKWDL 573 (712)
T ss_pred ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEEchhc
Confidence 13567889999995321 112233333333334468899999996542 2222222221 1222 3489999997
Q ss_pred C
Q 012680 222 D 222 (458)
Q Consensus 222 ~ 222 (458)
.
T Consensus 574 ~ 574 (712)
T PRK09518 574 M 574 (712)
T ss_pred C
Confidence 4
No 335
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.0096 Score=65.96 Aligned_cols=27 Identities=41% Similarity=0.533 Sum_probs=23.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
-+..++|+|+.|+||||++..||..|.
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356788999999999999999998875
No 336
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.12 E-value=0.0025 Score=64.38 Aligned_cols=59 Identities=27% Similarity=0.401 Sum_probs=41.5
Q ss_pred HhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHh---cC---CceEEeeccc-cCch
Q 012680 47 IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK---QG---KSCMLVAGDV-YRPA 112 (458)
Q Consensus 47 ~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~---~G---~kVllVd~D~-~rp~ 112 (458)
.-..+|..+|+++.. +..++.++|.+|+||||++..++..... .| .+|++||+.- +++.
T Consensus 80 tg~~~lD~ll~gGi~-------~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~ 145 (316)
T TIGR02239 80 TGSKELDKLLGGGIE-------TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPE 145 (316)
T ss_pred CCCHHHHHHhcCCCC-------CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHH
Confidence 344566676665432 4679999999999999999999874321 33 4889999864 4444
No 337
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.12 E-value=0.0008 Score=59.83 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=35.7
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHh---hhhhee---eee-eceeeeecccCCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIG-ITGAILTKLDGDS 223 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~-i~GvIlnk~D~~~ 223 (458)
.+++.|+||||...... .. ... .-..+.+++|+|+......... ...+.. ..+ ..-+|.||+|...
T Consensus 42 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 42 NVSFTVWDVGGQDKIRP-LW---KHY--YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred CEEEEEEECCCChhhHH-HH---HHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 57899999999754211 11 111 1234888999999654322221 111111 111 2236789999754
No 338
>PRK11058 GTPase HflX; Provisional
Probab=97.11 E-value=0.002 Score=67.67 Aligned_cols=115 Identities=22% Similarity=0.318 Sum_probs=60.0
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
.|+++|.+++||||+..+|. |.++. +.--++ ...+.. .+ .+. ...
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt------~~~~~-v~~~~~--tTld~~------~~--~i~------------------l~~ 243 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRIT------EARVY-AADQLF--ATLDPT------LR--RID------------------VAD 243 (426)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcee-eccCCC--CCcCCc------eE--EEE------------------eCC
Confidence 57889999999999998885 44444 111111 001100 00 000 001
Q ss_pred CCcEEEEeCCccccc-cHHHHHHHH-HHHhhcCcceEEEEEeccchh--hHh----Hhhhhhee-eeeeceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQI-DKAMMDELK-DVKRVLNPTEVLLVVDAMTGQ--EAA----ALVTTFNI-EIGITGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~-d~~l~~el~-~l~~~~~~~~vllVvda~~g~--~~~----~~~~~~~~-~~~i~GvIlnk~D~~ 222 (458)
...++|+||||.... ...+...+. .+.....+|.+++|+|++... ... +.+..... ..+ .-+|+||+|..
T Consensus 244 ~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~ 322 (426)
T PRK11058 244 VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDML 322 (426)
T ss_pred CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCC
Confidence 236899999998432 223232222 222334568899999985432 221 11222221 222 23899999964
No 339
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.11 E-value=0.001 Score=57.03 Aligned_cols=68 Identities=31% Similarity=0.419 Sum_probs=43.0
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 152 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~ 152 (458)
|++.|++|+||||++..+|.++ |..+.-+++...... ........+...+..+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~--------------------~~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS--------------------YAGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS--------------------STTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc--------------------cccccccccccccccccccc
Confidence 5788999999999999999887 455666665411100 11223334555566655444
Q ss_pred -CcEEEEeCCcc
Q 012680 153 -VDVVIVDTAGR 163 (458)
Q Consensus 153 -~DvVIIDtpg~ 163 (458)
..+++||-.-.
T Consensus 58 ~~~vl~iDe~d~ 69 (132)
T PF00004_consen 58 KPCVLFIDEIDK 69 (132)
T ss_dssp TSEEEEEETGGG
T ss_pred cceeeeeccchh
Confidence 68899986433
No 340
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.11 E-value=0.00051 Score=53.20 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=28.2
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
+|+++|.+|+||||++..|+..| .+.++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 47889999999999999999998 5677777764
No 341
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0007 Score=73.27 Aligned_cols=133 Identities=26% Similarity=0.288 Sum_probs=81.1
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
.++++|.|.+||||+-.+|. |.+.- .++-.|+.+--... .+...
T Consensus 5 ~valvGNPNvGKTtlFN~LT------G~~q~-----------------VgNwpGvTVEkkeg-------------~~~~~ 48 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALT------GANQK-----------------VGNWPGVTVEKKEG-------------KLKYK 48 (653)
T ss_pred eEEEecCCCccHHHHHHHHh------ccCce-----------------ecCCCCeeEEEEEE-------------EEEec
Confidence 48999999999999998886 32222 11122332221100 01125
Q ss_pred CCcEEEEeCCccccccHHHHHHH--HHHHhhcCcceEEEEEeccchhhHhHhhhhhee-eeeeceeeeecccCCCCCcce
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI-EIGITGAILTKLDGDSRGGAA 228 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el--~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~-~~~i~GvIlnk~D~~~~~g~~ 228 (458)
++++-|||.||....+....+|. ++...--+||-++-|+||+.-+..+...-+..+ +.+ .-+.+|++|...+.|.-
T Consensus 49 ~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 49 GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIP-MILALNMIDEAKKRGIR 127 (653)
T ss_pred CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCC-eEEEeccHhhHHhcCCc
Confidence 67899999999876533223332 222233457889999999766554444433322 333 44789999998776654
Q ss_pred e---eeeeccCCceeE
Q 012680 229 L---SVKEVSGKPIKL 241 (458)
Q Consensus 229 ~---~i~~~~g~pI~f 241 (458)
. .+.+.+|+||.+
T Consensus 128 ID~~~L~~~LGvPVv~ 143 (653)
T COG0370 128 IDIEKLSKLLGVPVVP 143 (653)
T ss_pred ccHHHHHHHhCCCEEE
Confidence 3 455679999964
No 342
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.10 E-value=0.002 Score=61.17 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=25.7
Q ss_pred cCCcEEEEeCCccccc---cHHHHHHHHHHHhh--cCcceEEEEEecc
Q 012680 151 KNVDVVIVDTAGRLQI---DKAMMDELKDVKRV--LNPTEVLLVVDAM 193 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~---d~~l~~el~~l~~~--~~~~~vllVvda~ 193 (458)
.+..+.||||||.... +.....++...... -.|+.++||++..
T Consensus 47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 47 DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG 94 (212)
T ss_dssp TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT
T ss_pred cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC
Confidence 4678999999998654 33455555443332 2357788888874
No 343
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.09 E-value=0.0012 Score=72.88 Aligned_cols=44 Identities=30% Similarity=0.582 Sum_probs=40.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCch
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 112 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~ 112 (458)
+|.+|+++|.+||||||++..|+..|...|..+.+++.|..|..
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~ 502 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHG 502 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhc
Confidence 58999999999999999999999999888999999999987754
No 344
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.09 E-value=0.00087 Score=69.13 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=35.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.|.+|.++|.+||||||++.+|...|..+ ++|.++..+.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~ 42 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHGC 42 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCC
Confidence 57899999999999999999999999999 9999998643
No 345
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.00095 Score=64.17 Aligned_cols=98 Identities=26% Similarity=0.383 Sum_probs=68.0
Q ss_pred HHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceee---eE---eccCCCeEEEeec
Q 012680 4 IRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE---LV---FAKSRPTVILLAG 77 (458)
Q Consensus 4 i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~---~~---~~~~~p~iI~i~G 77 (458)
+-++|..|+|.+.++..+.-.+++...+.+. .+-..+++.+ ++..+.+--+++... +. .....|.||++.|
T Consensus 20 L~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~--~~v~~~eir~-~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGG 96 (299)
T COG2074 20 LARSLTAAGVDPDLAYSIAIEIQEELKKEGI--RLVTKDEIRE-VYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIGG 96 (299)
T ss_pred HHHHHHhcccChhHHHHHHHHHHHHHHhCCC--eEeeHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhccCCCeEEEecC
Confidence 4689999999999999999999888776653 2233455666 555555443433211 10 1224588999999
Q ss_pred cccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 78 LQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 78 ~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+|+||||+|.-||..|. .+ .++..|.
T Consensus 97 asGVGkStIA~ElA~rLg---I~-~visTD~ 123 (299)
T COG2074 97 ASGVGKSTIAGELARRLG---IR-SVISTDS 123 (299)
T ss_pred CCCCChhHHHHHHHHHcC---Cc-eeecchH
Confidence 999999999999987664 32 3577774
No 346
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.08 E-value=0.0011 Score=61.21 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=18.1
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..|+++|.+|+||||+...|.
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~ 38 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLK 38 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 467889999999999997774
No 347
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.06 E-value=0.0043 Score=55.09 Aligned_cols=36 Identities=36% Similarity=0.655 Sum_probs=29.3
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCch
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 112 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~ 112 (458)
+++++|.+||||||++..|+..+ ...+++.|.++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccH
Confidence 47889999999999999998764 2467899988764
No 348
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.06 E-value=0.0023 Score=58.74 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=27.1
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
+++++|.+||||||+|..++.. .|.++++++..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~ 33 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATA 33 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc
Confidence 3678899999999999999865 57788888643
No 349
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.04 E-value=0.0019 Score=55.99 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.7
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...|.
T Consensus 3 ki~~~G~~~~GKstl~~~l~ 22 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLL 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57889999999999998775
No 350
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.04 E-value=0.0011 Score=59.64 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=17.9
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-++++|.+|+||||+...|.
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~ 24 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFK 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 357888999999999998773
No 351
>PRK08181 transposase; Validated
Probab=97.04 E-value=0.0016 Score=64.19 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=53.1
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...++++|++|+|||.++.+++..+.++|++|.++.+. ..++.+... . .. .. ..+.+..+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~----~L~~~l~~a-~-------~~---~~----~~~~l~~l- 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT----DLVQKLQVA-R-------RE---LQ----LESAIAKL- 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH----HHHHHHHHH-H-------hC---Cc----HHHHHHHH-
Confidence 45699999999999999999999999999999988753 223333211 0 00 01 11223333
Q ss_pred hcCCcEEEEeCCccccccHH
Q 012680 150 KKNVDVVIVDTAGRLQIDKA 169 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~ 169 (458)
..+|++|||=.|....+..
T Consensus 166 -~~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQA 184 (269)
T ss_pred -hcCCEEEEeccccccCCHH
Confidence 4789999998887665443
No 352
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.03 E-value=0.0021 Score=59.42 Aligned_cols=76 Identities=26% Similarity=0.414 Sum_probs=48.5
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...+++.|++|+|||.+|.+++..+.++|++|.++..+ ..++.+... ...+ . ..+.+..+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~----~L~~~l~~~--------~~~~---~----~~~~~~~l- 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS----DLLDELKQS--------RSDG---S----YEELLKRL- 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH----HHHHHHHCC--------HCCT---T----HCHHHHHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC----ceecccccc--------cccc---c----hhhhcCcc-
Confidence 45799999999999999999999999999999998754 223333210 0110 0 11223443
Q ss_pred hcCCcEEEEeCCccccc
Q 012680 150 KKNVDVVIVDTAGRLQI 166 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~ 166 (458)
.++|++|||=-|....
T Consensus 107 -~~~dlLilDDlG~~~~ 122 (178)
T PF01695_consen 107 -KRVDLLILDDLGYEPL 122 (178)
T ss_dssp -HTSSCEEEETCTSS--
T ss_pred -ccccEecccccceeee
Confidence 4789999998876554
No 353
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.03 E-value=0.0015 Score=58.06 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=17.6
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...|.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~ 21 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFM 21 (164)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999999988886
No 354
>PRK01184 hypothetical protein; Provisional
Probab=97.03 E-value=0.0015 Score=60.33 Aligned_cols=34 Identities=32% Similarity=0.506 Sum_probs=23.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeec-cccC
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYR 110 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~-D~~r 110 (458)
.+|+++|++||||||++. + +.+.|..+ +++ |..|
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~---~~~~g~~~--i~~~d~lr 36 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-I---AREMGIPV--VVMGDVIR 36 (184)
T ss_pred cEEEEECCCCCCHHHHHH-H---HHHcCCcE--EEhhHHHH
Confidence 489999999999999763 4 34557655 443 5443
No 355
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.02 E-value=0.0015 Score=59.96 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=46.6
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeec-cccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~-D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
+++++|.+||||||+|..|+..+ |.++.+++. +++..........|-...+-.+.....+.+ + .+.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~---l-~~~i~~~~- 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLD---L-AELLRADA- 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEeccccc---H-HHHHHhhc-
Confidence 68899999999999999998654 445555554 444433323333332222222222222222 1 12232211
Q ss_pred cCCcEEEEeCCccc
Q 012680 151 KNVDVVIVDTAGRL 164 (458)
Q Consensus 151 ~~~DvVIIDtpg~l 164 (458)
...++|+|||-..+
T Consensus 75 ~~~~~VlID~Lt~~ 88 (170)
T PRK05800 75 APGRCVLVDCLTTW 88 (170)
T ss_pred CCCCEEEehhHHHH
Confidence 34678999996554
No 356
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.02 E-value=0.0021 Score=66.79 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.7
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|.++|.++|||||+..+|.
T Consensus 160 adValVG~PNaGKSTLln~Lt 180 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVS 180 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHh
Confidence 358899999999999999886
No 357
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.02 E-value=0.0026 Score=67.23 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=37.4
Q ss_pred cCCcEEEEeCCccccccHHHH-HHH-HHHHhhcCcceEEEEEeccchhhHhH-hhhhhe-eeeeeceeeeecccCCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMM-DEL-KDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFN-IEIGITGAILTKLDGDS 223 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~-~el-~~l~~~~~~~~vllVvda~~g~~~~~-~~~~~~-~~~~i~GvIlnk~D~~~ 223 (458)
.++.+.|+||||.-......- ..+ ......-.++.+++|+|+....+... ...... ...+ .-+|+||+|...
T Consensus 249 ~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~p-iIlV~NK~Dl~~ 324 (442)
T TIGR00450 249 NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKP-FILVLNKIDLKI 324 (442)
T ss_pred CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCC-EEEEEECccCCC
Confidence 356789999999743221110 001 11222234688899999854432111 122221 1222 238999999753
No 358
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.01 E-value=0.00061 Score=65.17 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=33.6
Q ss_pred EEEeeccccccchhHhhHHHHHHHh--cCCceEEeeccccC
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 110 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~--~G~kVllVd~D~~r 110 (458)
+|.++|.+||||||++..|+..+.. .+.+|.++..|-|.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 4788999999999999999998875 56789999988764
No 359
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.00 E-value=0.0022 Score=58.10 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=36.4
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhH---hHhhhhhee-----eeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI-----EIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~---~~~~~~~~~-----~~~i~GvIlnk~D~~ 222 (458)
.++.+.|+||||..... .+. ....-.++.+++|+|+...... ......+.. ..+ .-+|.||.|..
T Consensus 41 ~~~~~~i~D~~G~~~~~-----~~~-~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~ 113 (167)
T cd04161 41 DKYEVCIFDLGGGANFR-----GIW-VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKK 113 (167)
T ss_pred CCEEEEEEECCCcHHHH-----HHH-HHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCc
Confidence 36789999999964211 110 0112245888999998544322 222222111 222 34889999975
Q ss_pred C
Q 012680 223 S 223 (458)
Q Consensus 223 ~ 223 (458)
.
T Consensus 114 ~ 114 (167)
T cd04161 114 N 114 (167)
T ss_pred C
Confidence 3
No 360
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.00 E-value=0.0024 Score=60.59 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=34.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.+..+++.|++|+||||++..++..+.+.|.++.+++|+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 456899999999999999999999988888899988876
No 361
>PRK07773 replicative DNA helicase; Validated
Probab=96.99 E-value=0.012 Score=67.40 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=35.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-cCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~~ 109 (458)
+..+++++|.||+|||+++.++|...+. .|++|+++.++..
T Consensus 216 ~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms 257 (886)
T PRK07773 216 PGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS 257 (886)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4578999999999999999999999885 4899999998763
No 362
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.98 E-value=0.0017 Score=68.68 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=68.2
Q ss_pred HHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcccc
Q 012680 45 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV 124 (458)
Q Consensus 45 ~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~ 124 (458)
+..+..+|.+++......-.. ..+..++++|.+|+||||+...|. |.++.++.. .|+..
T Consensus 192 i~~l~~~l~~l~~~~~~~~~~--~~~~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~---~~gtT---------- 250 (449)
T PRK05291 192 LEELIAELEALLASARQGEIL--REGLKVVIAGRPNVGKSSLLNALL------GEERAIVTD---IAGTT---------- 250 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hcCCEEEEECCCCCCHHHHHHHHh------CCCCcccCC---CCCcc----------
Confidence 344555555554422111011 123467889999999999998886 333322211 11110
Q ss_pred ccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHH--H-HHHHhhcCcceEEEEEeccchhh--Hh
Q 012680 125 GVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDE--L-KDVKRVLNPTEVLLVVDAMTGQE--AA 199 (458)
Q Consensus 125 gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~e--l-~~l~~~~~~~~vllVvda~~g~~--~~ 199 (458)
.+++.. .+...++.+.|+||||.-.... .... + ..+...-.+|.+++|+|+..... ..
T Consensus 251 -~d~~~~---------------~i~~~g~~i~l~DT~G~~~~~~-~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~ 313 (449)
T PRK05291 251 -RDVIEE---------------HINLDGIPLRLIDTAGIRETDD-EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDD 313 (449)
T ss_pred -cccEEE---------------EEEECCeEEEEEeCCCCCCCcc-HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHH
Confidence 000000 0011356789999999743221 1111 1 11222334688899999854421 12
Q ss_pred HhhhhheeeeeeceeeeecccCC
Q 012680 200 ALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 200 ~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
..... ....+ .-+|+||+|..
T Consensus 314 ~~l~~-~~~~p-iiiV~NK~DL~ 334 (449)
T PRK05291 314 EILEE-LKDKP-VIVVLNKADLT 334 (449)
T ss_pred HHHHh-cCCCC-cEEEEEhhhcc
Confidence 22221 12222 34899999974
No 363
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.98 E-value=0.0013 Score=61.88 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=17.4
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
.|+++|++||||||+...|.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~ 21 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLT 21 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 57889999999999997774
No 364
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.97 E-value=0.00089 Score=61.07 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.0
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..+++.|.+|+||||+...|.
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~ 36 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFL 36 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHc
Confidence 457788999999999997775
No 365
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.96 E-value=0.0018 Score=72.13 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.3
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
++++|++.|+.|+||||+...|.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~ 265 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIR 265 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999998774
No 366
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=96.96 E-value=0.0025 Score=66.79 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.8
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|.++|.+++||||+..+|.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt 179 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVS 179 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHH
Confidence 368899999999999998886
No 367
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=96.96 E-value=0.0023 Score=56.84 Aligned_cols=19 Identities=47% Similarity=0.702 Sum_probs=16.8
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+||||||+...+.
T Consensus 2 i~i~G~~~~GKTsl~~~~~ 20 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK 20 (160)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6788999999999998775
No 368
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00086 Score=62.06 Aligned_cols=37 Identities=38% Similarity=0.523 Sum_probs=28.0
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEee-ccccCchh
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-GDVYRPAA 113 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd-~D~~rp~a 113 (458)
.|++.|+|||||||+|..||.. +.+.-+| .|.+|++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~-----~~i~hlstgd~~r~~~ 39 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK-----LGLPHLDTGDILRAAI 39 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH-----hCCcEEcHhHHhHhhh
Confidence 4788899999999999999876 3345566 56666543
No 369
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.95 E-value=0.0019 Score=67.63 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=19.5
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+...|+++|+.|+||||++..|.
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~ 30 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALT 30 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhh
Confidence 34568888999999999998884
No 370
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.95 E-value=0.0017 Score=58.89 Aligned_cols=21 Identities=48% Similarity=0.642 Sum_probs=17.8
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..++++|.+||||||+...|.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~ 35 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHc
Confidence 457788999999999987775
No 371
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.94 E-value=0.0021 Score=57.99 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.0
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...++++|++|+||||+...|.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHh
Confidence 4568899999999999998775
No 372
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.94 E-value=0.002 Score=70.38 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.9
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+|.++++.|+.++||||+...|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~ 108 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIR 108 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 55689999999999999998773
No 373
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.93 E-value=0.0028 Score=64.34 Aligned_cols=88 Identities=26% Similarity=0.354 Sum_probs=55.8
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
..+++.|++|+|||+++.++|..+..+|++|++++++- .++.+.... +.. ... ....+..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~----l~~~l~~~~-------~~~--~~~----~~~~~~~l-- 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE----LIEILREIR-------FNN--DKE----LEEVYDLL-- 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH----HHHHHHHHH-------hcc--chh----HHHHHHHh--
Confidence 56999999999999999999999999999999888642 222232100 000 000 01113333
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHH
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDV 177 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l 177 (458)
.++|++|||--|...........+-.+
T Consensus 245 ~~~DLLIIDDlG~e~~t~~~~~~Lf~i 271 (329)
T PRK06835 245 INCDLLIIDDLGTEKITEFSKSELFNL 271 (329)
T ss_pred ccCCEEEEeccCCCCCCHHHHHHHHHH
Confidence 478999999887765444333344333
No 374
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.93 E-value=0.00075 Score=63.07 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=31.9
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+|.++|.+||||||++..|+..+ .+.++.++..|.|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 57899999999999999999888 46678999998654
No 375
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.93 E-value=0.0017 Score=57.88 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=17.3
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|++.|.+|+||||+...|.
T Consensus 3 i~v~G~~~vGKTsli~~l~ 21 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFV 21 (161)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999998875
No 376
>PRK09183 transposase/IS protein; Provisional
Probab=96.93 E-value=0.0048 Score=60.50 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=32.8
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
...+++.|++|+|||+++..|+..+...|++|.++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 4578899999999999999999888889999998764
No 377
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0019 Score=58.55 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=21.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
+++++++|-||+||||++..+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 6799999999999999997776655
No 378
>PRK08006 replicative DNA helicase; Provisional
Probab=96.92 E-value=0.02 Score=61.01 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=36.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~~r 110 (458)
+..++++.|.||.||||++.++|...+ +.|++|+++.+..-.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~ 265 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPG 265 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 457889999999999999999999887 469999999988543
No 379
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.91 E-value=0.068 Score=55.26 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=33.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcC--CceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G--~kVllVd~D~~r 110 (458)
.|..++++|++|+||||++..++..+...+ ..+..++|....
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 456788999999999999999999988764 667777775443
No 380
>PLN03118 Rab family protein; Provisional
Probab=96.91 E-value=0.0013 Score=62.07 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=18.1
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-++++|.+|+||||+...|+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~ 35 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFI 35 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 457788999999999998885
No 381
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.91 E-value=0.0043 Score=57.88 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=32.9
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
-.|.+.+.+|.||||.|..+|...+..|++|+++-+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 477788889999999999999999999999999875
No 382
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.91 E-value=0.0015 Score=57.75 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=17.1
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|++.|.+||||||+...|.
T Consensus 2 i~i~G~~~~GKTsli~~l~ 20 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFV 20 (160)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999998885
No 383
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.91 E-value=0.0021 Score=58.61 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=18.3
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
+-|+++|.+|+||||+...+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~ 22 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFV 22 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999998776
No 384
>PRK07004 replicative DNA helicase; Provisional
Probab=96.91 E-value=0.012 Score=62.43 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=37.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeeccccCch
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPA 112 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~~rp~ 112 (458)
+...++++|.||+|||+++.++|...+ +.|++|+++.+......
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~q 256 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQ 256 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHH
Confidence 457899999999999999999999887 46999999998865443
No 385
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.90 E-value=0.0015 Score=58.29 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=34.8
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHh------hhhheeeeeeceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~------~~~~~~~~~i~GvIlnk~D~~ 222 (458)
.+.+.|+||||..... .+.. . ..-.++.+++|+|.....+.... ........ ..-+|.||.|..
T Consensus 51 ~~~l~i~Dt~G~~~~~-~~~~---~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~ 120 (164)
T cd04101 51 TVELFIFDSAGQELYS-DMVS---N--YWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHM-PGVLVGNKMDLA 120 (164)
T ss_pred EEEEEEEECCCHHHHH-HHHH---H--HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC-CEEEEEECcccc
Confidence 4789999999853211 1111 1 12346888999998654332211 11121111 234788999974
No 386
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.90 E-value=0.0016 Score=58.42 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=35.2
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhH---hHhh---hhheeeeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALV---TTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~---~~~~---~~~~~~~~i~GvIlnk~D~~ 222 (458)
..+++.|+||||.-.... +. .. ..-..+.+++|+|....... .... .......++ -+|.||+|..
T Consensus 47 ~~~~~~i~Dt~G~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~-ivv~nK~Dl~ 117 (161)
T cd04124 47 KTILVDFWDTAGQERFQT-MH---AS--YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPC-IVVANKIDLD 117 (161)
T ss_pred EEEEEEEEeCCCchhhhh-hh---HH--HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEECccCc
Confidence 357788999999643211 11 11 12245888999998544222 1111 222222332 4899999964
No 387
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0039 Score=60.99 Aligned_cols=79 Identities=30% Similarity=0.461 Sum_probs=52.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.+..+++.|++|+|||.++++++..+.+.|++|+++.. |..+..+...-. .+. .. .+....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~----~el~~~Lk~~~~--------~~~---~~---~~l~~~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA----PDLLSKLKAAFD--------EGR---LE---EKLLREL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH----HHHHHHHHHHHh--------cCc---hH---HHHHHHh
Confidence 45689999999999999999999999988999998864 123333321111 000 00 0111112
Q ss_pred HhcCCcEEEEeCCcccccc
Q 012680 149 KKKNVDVVIVDTAGRLQID 167 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d 167 (458)
..+|+.|||=-|....+
T Consensus 166 --~~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 166 --KKVDLLIIDDIGYEPFS 182 (254)
T ss_pred --hcCCEEEEecccCccCC
Confidence 47999999988776544
No 388
>PRK05642 DNA replication initiation factor; Validated
Probab=96.90 E-value=0.004 Score=60.12 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=33.5
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
..+++.|++|+|||.++.+++..+.++|++|.+++++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 5688999999999999999999888889999998865
No 389
>PRK13695 putative NTPase; Provisional
Probab=96.90 E-value=0.0094 Score=54.50 Aligned_cols=31 Identities=42% Similarity=0.542 Sum_probs=26.9
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceE
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM 102 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVl 102 (458)
.++++|.+|+||||++..++..+...|.++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4788999999999999999988877787754
No 390
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.89 E-value=0.0012 Score=71.65 Aligned_cols=43 Identities=33% Similarity=0.600 Sum_probs=38.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHh-cCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~~r 110 (458)
+++.+|+++|.+||||||++..|+..|.. .|..+.++|.|..|
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 35789999999999999999999999986 78889999999553
No 391
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.88 E-value=0.0016 Score=63.59 Aligned_cols=44 Identities=34% Similarity=0.431 Sum_probs=39.5
Q ss_pred cCCCeEEEeeccccccchhHhhHHHHHHHhcCCc--eEEeeccccC
Q 012680 67 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS--CMLVAGDVYR 110 (458)
Q Consensus 67 ~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~k--VllVd~D~~r 110 (458)
.+.|.||.++|.+|+||||+|..|+..+++.+.+ |-+|..|-|.
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh 124 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH 124 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc
Confidence 4578999999999999999999999999988765 9999999876
No 392
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0037 Score=61.41 Aligned_cols=129 Identities=26% Similarity=0.288 Sum_probs=71.9
Q ss_pred CCC-eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHH
Q 012680 68 SRP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 146 (458)
Q Consensus 68 ~~p-~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~ 146 (458)
.+| -.|..+|+-.-||||+++++...|++.|.... .+.| .++.. ...+..|+.+-.+..+.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~-~~y~-----~id~a-PeEk~rGITIntahvey----------- 70 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEA-KAYD-----QIDNA-PEEKARGITINTAHVEY----------- 70 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccc-cchh-----hhccC-chHhhcCceeccceeEE-----------
Confidence 345 35566699999999999999999998873222 2222 11111 12233455443321110
Q ss_pred HHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hhHhHhhhhheeeeeeceeeeecccCC
Q 012680 147 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 147 ~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
...+--|..+||||.-..-..+ +..+.+.|..+||+.|..| |.-..++..-.-.++..-+++||+|.-
T Consensus 71 --et~~rhyahVDcPGHaDYvKNM------ItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv 141 (394)
T COG0050 71 --ETANRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV 141 (394)
T ss_pred --ecCCceEEeccCCChHHHHHHH------hhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc
Confidence 1134568899999975321222 2223345899999988544 333222222222333345789999854
No 393
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.88 E-value=0.0012 Score=65.72 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=36.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhc--CCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~--G~kVllVd~D~~r 110 (458)
+.|.+|.++|.+||||||++..|...+.+. +.+|.++..|.|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 468899999999999999999888877743 4579999999765
No 394
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=96.87 E-value=0.0028 Score=57.17 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=34.3
Q ss_pred EEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhH-hhhhheeeeeeceeeeecccCC
Q 012680 157 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 157 IIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
++||||..........++.. ..-.++.+++|+|+........ ....+....+ .-+++||+|..
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~--~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~-ii~v~nK~Dl~ 104 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALIT--TLQDVDMLIYVHGANDPESRLPAGLLDIGVSKR-QIAVISKTDMP 104 (158)
T ss_pred cccCCccccCCHHHHHHHHH--HHhcCCEEEEEEeCCCcccccCHHHHhccCCCC-eEEEEEccccC
Confidence 58999974333233333221 1235688999999965532211 1122221222 34899999964
No 395
>PRK06904 replicative DNA helicase; Validated
Probab=96.87 E-value=0.022 Score=60.63 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=77.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-cCCceEEeeccccCchhhhHHhhhccccccceec--CCCccChHH--HHHh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--AGTEVKPSQ--IAKQ 143 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~--~~~~~~~~~--i~~~ 143 (458)
+...++++|.||+|||+++.++|...+. .|++|+++.++.-.......+ ++...+++... .+...+..+ .+..
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rl--la~~s~v~~~~i~~g~~l~~~e~~~~~~ 297 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRM--LASLSRVDQTKIRTGQNLDQQDWAKISS 297 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHhhCCCCHHHhccCCCCCHHHHHHHHH
Confidence 4578999999999999999999998875 599999999886443332222 22223333221 111122222 2233
Q ss_pred hHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEec---cc--h------hh---HhHhhhhheeee
Q 012680 144 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---MT--G------QE---AAALVTTFNIEI 209 (458)
Q Consensus 144 ~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda---~~--g------~~---~~~~~~~~~~~~ 209 (458)
++..+. ....+-|.|+|+.- . ..+...+..+.... ...-++|||. .. + ++ ..+.++.+..++
T Consensus 298 a~~~l~-~~~~l~I~d~~~~t-~-~~i~~~~r~~~~~~-~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 373 (472)
T PRK06904 298 TVGMFK-QKPNLYIDDSSGLT-P-TELRSRARRVYREN-GGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKEL 373 (472)
T ss_pred HHHHHh-cCCCEEEECCCCCC-H-HHHHHHHHHHHHhC-CCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 344332 23456777777642 2 12233333332211 1122677775 11 1 11 122234455566
Q ss_pred eeceeeeecccC
Q 012680 210 GITGAILTKLDG 221 (458)
Q Consensus 210 ~i~GvIlnk~D~ 221 (458)
++.-|++.++..
T Consensus 374 ~ipVi~lsQLnR 385 (472)
T PRK06904 374 KVPVVALSQLNR 385 (472)
T ss_pred CCeEEEEEecCc
Confidence 666677776653
No 396
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.87 E-value=0.01 Score=55.73 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=26.4
Q ss_pred EEEeeccccccchhHhhHHHHHHHhc-CCceEEe
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLV 104 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllV 104 (458)
+++++|++||||||+...|+.++... +.++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~ 36 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI 36 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE
Confidence 68999999999999999998888754 4454443
No 397
>PRK08727 hypothetical protein; Validated
Probab=96.86 E-value=0.0051 Score=59.31 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=33.0
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
..+++.|++|+|||+++.+++..+.+.|++|.++.++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 3589999999999999999999999999999988743
No 398
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=96.86 E-value=0.0026 Score=56.49 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=35.7
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhH---hHhhhhh------e-eeeeeceeeeeccc
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTF------N-IEIGITGAILTKLD 220 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~---~~~~~~~------~-~~~~i~GvIlnk~D 220 (458)
.++.+.|+||||...... +. .. ..-.++.+++|+|+...... ......+ . ...+ .-+|+||+|
T Consensus 43 ~~~~~~l~Dt~G~~~~~~-~~---~~--~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D 115 (162)
T cd04157 43 GNLSFTAFDMSGQGKYRG-LW---EH--YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMD 115 (162)
T ss_pred CCEEEEEEECCCCHhhHH-HH---HH--HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCcc
Confidence 356789999999753211 11 11 11245889999998654321 1111111 1 1222 347999999
Q ss_pred CC
Q 012680 221 GD 222 (458)
Q Consensus 221 ~~ 222 (458)
..
T Consensus 116 l~ 117 (162)
T cd04157 116 LP 117 (162)
T ss_pred cc
Confidence 75
No 399
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.85 E-value=0.004 Score=58.27 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.0
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...|.
T Consensus 3 kI~i~G~~g~GKSSLin~L~ 22 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR 22 (197)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998886
No 400
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.85 E-value=0.0037 Score=55.23 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=17.3
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+|+||||+...|+
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6788999999999998886
No 401
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.84 E-value=0.0028 Score=69.25 Aligned_cols=63 Identities=25% Similarity=0.306 Sum_probs=36.3
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hhHhHhhhhheeeeee--ceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGI--TGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i--~GvIlnk~D~~ 222 (458)
++.+.|+||||.-. +...+ +......|.+++|+|+..+ ++. +.+... ...++ .-|++||+|..
T Consensus 49 ~~~v~~iDtPGhe~----f~~~~--~~g~~~aD~aILVVDa~~G~~~qT~-ehl~il-~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 49 DYRLGFIDVPGHEK----FISNA--IAGGGGIDAALLVVDADEGVMTQTG-EHLAVL-DLLGIPHTIVVITKADRV 116 (581)
T ss_pred CEEEEEEECCCHHH----HHHHH--HhhhccCCEEEEEEECCCCCcHHHH-HHHHHH-HHcCCCeEEEEEECCCCC
Confidence 46789999999532 22222 2223346899999999653 222 222111 12233 34889999975
No 402
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.84 E-value=0.0018 Score=57.62 Aligned_cols=19 Identities=37% Similarity=0.732 Sum_probs=17.3
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|++.|.+|+||||+...|.
T Consensus 3 v~v~G~~~~GKTtli~~l~ 21 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFT 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7888999999999998885
No 403
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=96.84 E-value=0.0053 Score=65.47 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.4
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+++||||+...|.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls 180 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALS 180 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHh
Confidence 4568889999999999998886
No 404
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=96.83 E-value=0.0013 Score=72.03 Aligned_cols=89 Identities=24% Similarity=0.255 Sum_probs=47.9
Q ss_pred CCcEEEEeCCccccccHHHHH-HH-HHHHhhcCcceEEEEEeccchhhHhHhhhhhe-eeeeeceeeeecccCCCCCcc-
Q 012680 152 NVDVVIVDTAGRLQIDKAMMD-EL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFN-IEIGITGAILTKLDGDSRGGA- 227 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~-el-~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~-~~~~i~GvIlnk~D~~~~~g~- 227 (458)
++.+.++||||.......... .+ ......-.+|-+++|+|+...+.......... .+.+ .-+++||+|...+.+.
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~i~ 118 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIP-MILALNLVDEAEKKGIR 118 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCC-EEEEEehhHHHHhCCCh
Confidence 456899999997653211111 11 11112224688899999966544333333222 1222 3488999997533321
Q ss_pred --eeeeeeccCCceeE
Q 012680 228 --ALSVKEVSGKPIKL 241 (458)
Q Consensus 228 --~~~i~~~~g~pI~f 241 (458)
...+.+..|.|+..
T Consensus 119 ~d~~~L~~~lg~pvv~ 134 (591)
T TIGR00437 119 IDEEKLEERLGVPVVP 134 (591)
T ss_pred hhHHHHHHHcCCCEEE
Confidence 23345556777743
No 405
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=96.82 E-value=0.0039 Score=58.51 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=16.9
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+||||||+...+.
T Consensus 3 I~ivG~~~vGKTsLi~~~~ 21 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFL 21 (198)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6888999999999998775
No 406
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.81 E-value=0.01 Score=63.98 Aligned_cols=132 Identities=26% Similarity=0.364 Sum_probs=76.8
Q ss_pred HHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCC--ceEEeeccccCchhhhHHhhhccc
Q 012680 46 KIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGK--SCMLVAGDVYRPAAIDQLVILGEQ 123 (458)
Q Consensus 46 ~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~--kVllVd~D~~rp~a~~~l~~~~~~ 123 (458)
-.++++|-+.++ ...+|+++|-.||||||- |+.||-..|+ +-.+.+.-|.|.+++.-..+.++.
T Consensus 358 f~~R~~ll~~ir-----------~n~vvvivgETGSGKTTQ---l~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 358 FACRDQLLSVIR-----------ENQVVVIVGETGSGKTTQ---LAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred HHHHHHHHHHHh-----------hCcEEEEEecCCCCchhh---hHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHH
Confidence 355666666665 245899999999999985 5666766654 456666688888877665555555
Q ss_pred cccc--------eecCCC--------ccChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHH-HHHHHHHhhcCcceE
Q 012680 124 VGVP--------VYTAGT--------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM-DELKDVKRVLNPTEV 186 (458)
Q Consensus 124 ~gv~--------v~~~~~--------~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~-~el~~l~~~~~~~~v 186 (458)
.|++ +...+. ......++++.+..-....|.+||+|-+---..+.++. .-++.+..- ..|--
T Consensus 424 M~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlK 502 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLK 502 (1042)
T ss_pred hCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccce
Confidence 4332 221111 11122355666665555689999999875433333332 323322222 22444
Q ss_pred EEEEec
Q 012680 187 LLVVDA 192 (458)
Q Consensus 187 llVvda 192 (458)
++|..|
T Consensus 503 liVtSA 508 (1042)
T KOG0924|consen 503 LIVTSA 508 (1042)
T ss_pred EEEeec
Confidence 666655
No 407
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.81 E-value=0.002 Score=56.47 Aligned_cols=19 Identities=53% Similarity=0.672 Sum_probs=16.8
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+|+||||+...|.
T Consensus 2 i~i~G~~~~GKssl~~~l~ 20 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIA 20 (159)
T ss_pred EEEEcCCCCCHHHHHHHHc
Confidence 6788999999999998774
No 408
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.80 E-value=0.0014 Score=67.88 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=36.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
+|.+|.|+|.+||||||++..|...+...|.++..|..|-|
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 68899999999999999999998888777889998988754
No 409
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.80 E-value=0.0073 Score=55.68 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.1
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~ 45 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALT 45 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh
Confidence 3458889999999999998886
No 410
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.79 E-value=0.0031 Score=65.88 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.0
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...|+++|+.++||||++.+|.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt 25 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALT 25 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHh
Confidence 3468888999999999998884
No 411
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.79 E-value=0.03 Score=50.80 Aligned_cols=88 Identities=22% Similarity=0.204 Sum_probs=50.4
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc--CchhhhHHhhhccccccceecCCCc-----cChHH---HH
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY--RPAAIDQLVILGEQVGVPVYTAGTE-----VKPSQ---IA 141 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~--rp~a~~~l~~~~~~~gv~v~~~~~~-----~~~~~---i~ 141 (458)
+.+.+|. |.||||.|..+|...+.+|++|+++..=-. ..+-..-+..+ .++.++..+.. .++.+ .+
T Consensus 5 i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l---~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 5 IQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL---PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC---CCcEEEECCCCCccCCCChHHHHHHH
Confidence 4444455 999999999999999999999999543211 11222223322 24444443321 11222 22
Q ss_pred HhhHH----HHHhcCCcEEEEeCCcc
Q 012680 142 KQGLE----EAKKKNVDVVIVDTAGR 163 (458)
Q Consensus 142 ~~~l~----~~~~~~~DvVIIDtpg~ 163 (458)
+++++ .+....||++|+|=-..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHh
Confidence 33333 23346899999996443
No 412
>PLN02796 D-glycerate 3-kinase
Probab=96.78 E-value=0.0035 Score=63.66 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=36.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+|.+|.++|.+||||||++..|...+...|.++..+..|-+.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 678999999999999999999999998778888888877443
No 413
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=96.78 E-value=0.0026 Score=69.19 Aligned_cols=118 Identities=16% Similarity=0.158 Sum_probs=63.1
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
..|+++|++|+||||+...|. |.++..+. .+++.+... .. +.. ..
T Consensus 119 lrIvLVGKTGVGKSSLINSIL------Gekvf~vs--s~~~~TTr~-------~e--i~~------------------~i 163 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIF------GEVKFSTD--AFGMGTTSV-------QE--IEG------------------LV 163 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cccccccc--CCCCCceEE-------EE--EEE------------------EE
Confidence 468999999999999999886 55544332 222322110 00 000 01
Q ss_pred cCCcEEEEeCCcccccc------HHHHHHHHHHHhhcCcceEEEEEecc-chh-----hHhHhh-hhheee-eeeceeee
Q 012680 151 KNVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAM-TGQ-----EAAALV-TTFNIE-IGITGAIL 216 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d------~~l~~el~~l~~~~~~~~vllVvda~-~g~-----~~~~~~-~~~~~~-~~i~GvIl 216 (458)
.+..+.||||||..... .....++..+.....++.+++|.... ... .+++.+ ..|.+. +.-.-||+
T Consensus 164 dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVF 243 (763)
T TIGR00993 164 QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTL 243 (763)
T ss_pred CCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEE
Confidence 35679999999998642 12223333333333466666665432 111 122222 223332 23355899
Q ss_pred ecccCCC
Q 012680 217 TKLDGDS 223 (458)
Q Consensus 217 nk~D~~~ 223 (458)
|+.|...
T Consensus 244 ThgD~lp 250 (763)
T TIGR00993 244 THAASAP 250 (763)
T ss_pred eCCccCC
Confidence 9998753
No 414
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.78 E-value=0.0037 Score=56.48 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=36.1
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhH---hHhhhhhe---eeeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN---IEIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~---~~~~~~~~---~~~~i~GvIlnk~D~~ 222 (458)
.++.+.|+||||....... .. . ..-..+.+++|+|+...... ......+. ...++ -+|.||.|..
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~-~~---~--~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~pi-ilv~NK~Dl~ 112 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKY-WK---R--YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPL-VVLANKQDLP 112 (164)
T ss_pred CCeEEEEEECCCCcchhHH-HH---H--HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcE-EEEEeCcCCc
Confidence 4677999999997532211 11 1 11235888999998554322 12122221 22333 3888999965
No 415
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.78 E-value=0.01 Score=54.49 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=25.6
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeec-cccC
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYR 110 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~-D~~r 110 (458)
+|+++|++||||||+|..||..+ | +..++. |..|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~---~--~~~is~~d~lr 35 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF---G--FTHLSAGDLLR 35 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc---C--CeEEECChHHH
Confidence 57889999999999999998765 3 344554 5444
No 416
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.78 E-value=0.0027 Score=69.34 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+|.+|++.|++++||||+..+|.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~ 27 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIR 27 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999998883
No 417
>PHA00729 NTP-binding motif containing protein
Probab=96.78 E-value=0.0014 Score=62.74 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.4
Q ss_pred eEEEeeccccccchhHhhHHHHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
..|+++|+||+||||+|.+|+..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998765
No 418
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.77 E-value=0.0017 Score=60.34 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=32.8
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
+.+|++.|..||||||++..|+..|...|++|.++..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4689999999999999999999999999999876543
No 419
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=96.77 E-value=0.0025 Score=57.71 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=35.5
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHh---Hhhhhheee--e--eeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE--I--GITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~---~~~~~~~~~--~--~i~GvIlnk~D~~ 222 (458)
.++.+.|+||||...... . ... .....+.+++|+|....+... .....+... . ...-++.||.|..
T Consensus 41 ~~~~i~l~Dt~G~~~~~~-~---~~~--~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 41 KNLKFTIWDVGGKHKLRP-L---WKH--YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred CCEEEEEEECCCChhcch-H---HHH--HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 357899999999643211 1 111 112358889999985543222 211212111 1 1234788999975
No 420
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.77 E-value=0.0022 Score=57.70 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=14.9
Q ss_pred eeccccccchhHhhHHH
Q 012680 75 LAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 75 i~G~~GsGKTT~a~~LA 91 (458)
+.|.+||||||+...|.
T Consensus 1 iiG~~~~GKStll~~l~ 17 (176)
T cd01881 1 LVGLPNVGKSTLLNALT 17 (176)
T ss_pred CCCCCCCcHHHHHHHHh
Confidence 46999999999998776
No 421
>PRK06321 replicative DNA helicase; Provisional
Probab=96.76 E-value=0.013 Score=62.49 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=37.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeeccccCch
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPA 112 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~~rp~ 112 (458)
+...++++|.||+|||+++.++|...+ +.|++|++++++.-...
T Consensus 225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~q 269 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQ 269 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 357899999999999999999999887 46999999998864433
No 422
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.75 E-value=0.0023 Score=57.35 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=17.2
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+||||||+...+.
T Consensus 4 ki~i~G~~~vGKSsli~~~~ 23 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFA 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47788999999999997774
No 423
>PRK06893 DNA replication initiation factor; Validated
Probab=96.74 E-value=0.0045 Score=59.48 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=33.1
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
..+++.|++|+|||+++.+++..+.++|.+|.++.++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 3688999999999999999999999889999888764
No 424
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.74 E-value=0.0038 Score=56.44 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.8
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...+.
T Consensus 4 ki~vvG~~~vGKTsli~~~~ 23 (170)
T cd04115 4 KIIVIGDSNVGKTCLTYRFC 23 (170)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57888999999999998875
No 425
>PRK08840 replicative DNA helicase; Provisional
Probab=96.74 E-value=0.0076 Score=64.03 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=35.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~~ 109 (458)
+...+++.|.||+||||++.++|...+ +.|++|+++.+..-
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 457889999999999999999999887 46999999998854
No 426
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.74 E-value=0.0024 Score=56.79 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.2
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+||||||++..|.
T Consensus 3 i~~vG~~~vGKTsli~~l~ 21 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYC 21 (168)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999998875
No 427
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.014 Score=58.23 Aligned_cols=90 Identities=24% Similarity=0.354 Sum_probs=59.2
Q ss_pred eEEEeeccccccchhHhhHHHHHHHh----cC------CceEEeeccccCchhhhHHhhhccccccc--------eecCC
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKK----QG------KSCMLVAGDVYRPAAIDQLVILGEQVGVP--------VYTAG 132 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~----~G------~kVllVd~D~~rp~a~~~l~~~~~~~gv~--------v~~~~ 132 (458)
...++.|.+|+||||++.-|..+|+. -| .+|++|.|..+|+.....+.......|++ .....
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~ 169 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS 169 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc
Confidence 45566699999999999888877763 14 47999999999998877665444444332 21111
Q ss_pred C------ccChHHHHHhhHHHHHhcCCcEEEEeCC
Q 012680 133 T------EVKPSQIAKQGLEEAKKKNVDVVIVDTA 161 (458)
Q Consensus 133 ~------~~~~~~i~~~~l~~~~~~~~DvVIIDtp 161 (458)
. ...| .+.++....+....+|+||||+-
T Consensus 170 Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 170 GAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred cCCCccccccH-HHHHHHHHHHHHhCCCeEEEcch
Confidence 1 1222 33455555555568999999983
No 428
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0013 Score=62.30 Aligned_cols=40 Identities=33% Similarity=0.456 Sum_probs=34.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++.+|.++|.+||||||+|..|...|... +|.++..|-|-
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YY 46 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYY 46 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccc
Confidence 34789999999999999999999888754 88999998764
No 429
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.73 E-value=0.0065 Score=58.67 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=33.8
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
..+++.|++|+|||+++..++..+.+.|++|.++.+|
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 4788999999999999999999988889999998876
No 430
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.73 E-value=0.0029 Score=55.21 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=17.0
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+|+||||+...|.
T Consensus 3 v~liG~~~vGKSsL~~~l~ 21 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQ 21 (142)
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7889999999999998774
No 431
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.73 E-value=0.0086 Score=55.54 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=25.9
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEe
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 104 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV 104 (458)
..+++++|++||||||+...|+..+... .++..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~i 58 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITI 58 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEE
Confidence 4589999999999999999988766543 334433
No 432
>PRK04040 adenylate kinase; Provisional
Probab=96.71 E-value=0.002 Score=60.12 Aligned_cols=26 Identities=46% Similarity=0.631 Sum_probs=23.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
|.+|+++|.+||||||++..|+..|.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 67899999999999999999998875
No 433
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.71 E-value=0.0053 Score=56.44 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=17.8
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..+++.|.+||||||+...|.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 345999999999999998764
No 434
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.70 E-value=0.004 Score=55.43 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=17.6
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||++..|.
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFV 22 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37888999999999998885
No 435
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.70 E-value=0.022 Score=64.49 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=24.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
-+..++|+|+.|+||||++..||..|-
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998875
No 436
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.70 E-value=0.0031 Score=58.89 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||++..+.
T Consensus 7 ~kivvvG~~~vGKTsli~~l~ 27 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFA 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 358888999999999998775
No 437
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.69 E-value=0.0016 Score=61.47 Aligned_cols=41 Identities=32% Similarity=0.455 Sum_probs=33.0
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.++.+|.++|++||||||++..|+..+.. ..+.++..|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~ 44 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNYY 44 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEecccccc
Confidence 35679999999999999999999887754 457778887653
No 438
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.69 E-value=0.0036 Score=56.18 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.7
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..++++|.+|+||||+...|.
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568889999999999998875
No 439
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.69 E-value=0.0034 Score=55.82 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=17.4
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...+.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~ 23 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFI 23 (164)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47888999999999987775
No 440
>PTZ00301 uridine kinase; Provisional
Probab=96.68 E-value=0.0022 Score=60.98 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=32.4
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhc-C-CceEEeeccccC
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVYR 110 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~-G-~kVllVd~D~~r 110 (458)
.+|.++|.+||||||+|.+|+..+... | ..|.++..|-|.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 689999999999999999999887543 4 346688888764
No 441
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.68 E-value=0.0014 Score=58.78 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=16.9
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+|+||||++..|.
T Consensus 3 i~i~G~~~~GKSsli~~l~ 21 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYT 21 (171)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999998775
No 442
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=96.68 E-value=0.0029 Score=56.43 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhH---hHhhhhh-e----eeeeeceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTF-N----IEIGITGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~---~~~~~~~-~----~~~~i~GvIlnk~D~~ 222 (458)
+..+.|+||||...... +.. .....++.+++|+|+...... .+....+ . ... ..-+|+||+|..
T Consensus 42 ~~~~~i~Dt~G~~~~~~-----~~~-~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-piiiv~nK~Dl~ 113 (158)
T cd04151 42 NLKFQVWDLGGQTSIRP-----YWR-CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGA-VLLVFANKQDMP 113 (158)
T ss_pred CEEEEEEECCCCHHHHH-----HHH-HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC-cEEEEEeCCCCC
Confidence 56789999999753211 100 111245888999998543221 1212211 1 122 234899999975
No 443
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.68 E-value=0.0017 Score=55.48 Aligned_cols=68 Identities=19% Similarity=0.077 Sum_probs=36.7
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhh-------hhheeeeeeceeeeecccCCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV-------TTFNIEIGITGAILTKLDGDS 223 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~-------~~~~~~~~i~GvIlnk~D~~~ 223 (458)
..+++.++|+||........ .......+.+++|+|+.......... ......-...-+|+||+|...
T Consensus 43 ~~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 43 KKVKLQIWDTAGQERFRSLR------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEEEEEecCChHHHHhHH------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 36789999999965322111 11122357889999986543222111 111111112348889999753
Q ss_pred C
Q 012680 224 R 224 (458)
Q Consensus 224 ~ 224 (458)
.
T Consensus 117 ~ 117 (157)
T cd00882 117 E 117 (157)
T ss_pred c
Confidence 3
No 444
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.67 E-value=0.0026 Score=62.82 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=46.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC--chhhhHHhhhccccccceecCCCccChHHHHHhhHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 146 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r--p~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~ 146 (458)
+.-.|+++|+.|||||||.+++.-|+-+.-.+..+-==||.- ......+. .-.+.|.++ .....++.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI-~QREvG~dT----------~sF~~aLr 192 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLI-NQREVGRDT----------LSFANALR 192 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhh-hHHHhcccH----------HHHHHHHH
Confidence 345899999999999999999999987653333222224311 00001110 111122221 22345666
Q ss_pred HHHhcCCcEEEEe
Q 012680 147 EAKKKNVDVVIVD 159 (458)
Q Consensus 147 ~~~~~~~DvVIID 159 (458)
.+..++.|+|+|-
T Consensus 193 aALReDPDVIlvG 205 (353)
T COG2805 193 AALREDPDVILVG 205 (353)
T ss_pred HHhhcCCCEEEEe
Confidence 6667899999983
No 445
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=96.66 E-value=0.0031 Score=57.26 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=35.5
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHh---Hhhhhhee-----eeeeceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI-----EIGITGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~---~~~~~~~~-----~~~i~GvIlnk~D~~ 222 (458)
++.+.|+||||..... .+.. .....++.+++|+|+....... .....+.. .. ..-+|.||+|..
T Consensus 52 ~~~~~l~Dt~G~~~~~-----~~~~-~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~-piilv~NK~Dl~ 123 (168)
T cd04149 52 NVKFNVWDVGGQDKIR-----PLWR-HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDA-LLLVFANKQDLP 123 (168)
T ss_pred CEEEEEEECCCCHHHH-----HHHH-HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCC-cEEEEEECcCCc
Confidence 5679999999974321 1110 1122458899999986543222 22222211 12 234788999964
No 446
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.66 E-value=0.0031 Score=56.83 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=36.3
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHh-------hhhheeeeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL-------VTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~-------~~~~~~~~~i~GvIlnk~D~~ 222 (458)
..+++.|+||||......... .. ....+.+++|+|.....+.... +.......+ .-+|.||+|..
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~ 116 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLA----AE--IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLR 116 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHh----hh--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcc
Confidence 457899999998753221111 11 2345778889888654433221 122222222 34778999974
No 447
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.65 E-value=0.0039 Score=56.14 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.1
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...+.
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~ 24 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFS 24 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 357889999999999998875
No 448
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.65 E-value=0.002 Score=59.52 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=31.3
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
+|++.|..||||||++..|+..|...|++|..+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 68899999999999999999999999999876543
No 449
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.64 E-value=0.0032 Score=57.58 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=36.0
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh---hHhHhhhhheee--e--eeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIE--I--GITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~---~~~~~~~~~~~~--~--~i~GvIlnk~D~~ 222 (458)
..+.+.|+||||...... + .... .-.++.+++|+|.+... ++.+....+... . ....+|.||.|..
T Consensus 55 ~~~~l~l~D~~G~~~~~~-~---~~~~--~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 55 KNISFTVWDVGGQDKIRP-L---WRHY--YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred CCEEEEEEECCCChhhHH-H---HHHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 356799999999643211 1 1111 22458889999985432 222222222111 1 1245899999964
No 450
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=96.62 E-value=0.0044 Score=59.31 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=33.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.+-+|+++|+|+.|||++|.+|+.||.-.|.++-+..+--+
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~y 51 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDY 51 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccc
Confidence 46789999999999999999999999999999997776433
No 451
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.62 E-value=0.013 Score=64.84 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=31.8
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEee
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 105 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd 105 (458)
.++++.|+||+||||++..+...+.+.|++|+++.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 46778999999999999999999999999999876
No 452
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.61 E-value=0.006 Score=56.21 Aligned_cols=19 Identities=26% Similarity=0.618 Sum_probs=17.3
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+||||||+...+.
T Consensus 3 i~v~G~~~vGKSsli~~~~ 21 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFT 21 (188)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7889999999999998875
No 453
>PRK06921 hypothetical protein; Provisional
Probab=96.61 E-value=0.0062 Score=60.02 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=33.3
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeec
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAG 106 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~ 106 (458)
...+++.|.+|+|||+++.++|..+.++ |++|+++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4578999999999999999999999887 999998874
No 454
>COG2403 Predicted GTPase [General function prediction only]
Probab=96.61 E-value=0.014 Score=59.04 Aligned_cols=134 Identities=26% Similarity=0.371 Sum_probs=75.4
Q ss_pred EEEeecc-ccccchhHhhHHHHHHHhcCCceEEeec-cccCchhhhH----Hhhhccc--------------cccceecC
Q 012680 72 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQ----LVILGEQ--------------VGVPVYTA 131 (458)
Q Consensus 72 iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~-D~~rp~a~~~----l~~~~~~--------------~gv~v~~~ 131 (458)
+|.++|. .|+|||+++..+++.|+.+|++|.+|.. -+++..-+++ +....+. ..++....
T Consensus 128 viaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~I~tg~~ 207 (449)
T COG2403 128 VIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESYIPTGGG 207 (449)
T ss_pred eEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCceecCCchhhhHHHHhCHhhccccccchhhHHHHhhccccccc
Confidence 5666655 9999999999999999999999998875 2344322111 1111110 01111100
Q ss_pred C-CccChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc-hhhHhHhhhhheeee
Q 012680 132 G-TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALVTTFNIEI 209 (458)
Q Consensus 132 ~-~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~-g~~~~~~~~~~~~~~ 209 (458)
. ...+-..+++++. ...|+|+.|+.+.-- -.+.||..++|+|+.. +++.....-.+ .+
T Consensus 208 vlAGvdy~~vlke~~-----~~aD~IlwdGgnndf-------------Pfvkpd~~Ivvvda~rpg~ei~~~pGe~--~i 267 (449)
T COG2403 208 VLAGVDYGTVLKEGE-----KEADFILWDGGNNDF-------------PFVKPDLHIVVVDALRPGEEIGSFPGEL--RI 267 (449)
T ss_pred eEeeeeHHHHHHHHh-----hhccEEEEeCCCCCC-------------CcccCCeeEEEecCCCCchhhccCCCce--ee
Confidence 0 0111222333332 235999999977531 1134688899999954 55543322222 22
Q ss_pred ee-ceeeeecccCCCCC
Q 012680 210 GI-TGAILTKLDGDSRG 225 (458)
Q Consensus 210 ~i-~GvIlnk~D~~~~~ 225 (458)
+. ..||+||+|....+
T Consensus 268 rlAD~VIItkveea~~~ 284 (449)
T COG2403 268 RLADLVIITKVEEAMAE 284 (449)
T ss_pred eeccEEEEecccccchH
Confidence 32 45899999976433
No 455
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.60 E-value=0.0018 Score=58.63 Aligned_cols=35 Identities=34% Similarity=0.532 Sum_probs=28.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
++..|+++|++||||||++..||..+ | ..++|.|.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l---~--~~~~d~d~ 37 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL---G--YDFIDTDH 37 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh---C--CCEEEChH
Confidence 46789999999999999999999877 3 34667763
No 456
>PRK04213 GTP-binding protein; Provisional
Probab=96.57 E-value=0.01 Score=55.25 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..|+++|.+|+||||+...|.
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~ 30 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELT 30 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 467888999999999998874
No 457
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.56 E-value=0.0039 Score=52.69 Aligned_cols=19 Identities=42% Similarity=0.695 Sum_probs=17.1
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|++.|..||||||+...|+
T Consensus 2 I~V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 6788999999999998876
No 458
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.55 E-value=0.0051 Score=56.99 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=16.7
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+||||||++..+.
T Consensus 3 i~vvG~~~vGKTSli~~~~ 21 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFK 21 (191)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6788999999999997774
No 459
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.54 E-value=0.0076 Score=56.21 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=16.9
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+|+||||+...+.
T Consensus 2 v~vvG~~~vGKTsll~~~~ 20 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFL 20 (198)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999998774
No 460
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.54 E-value=0.0012 Score=68.61 Aligned_cols=132 Identities=18% Similarity=0.281 Sum_probs=75.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..|...+..+---||||++-.|.....- ++---.+....|.+. +.+..|+.+-....... ...-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~-------~~~Rem~~Q~LDsMd-iERERGITIKaq~v~l~--------Yk~~ 71 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGG-------LSEREMRAQVLDSMD-IERERGITIKAQAVRLN--------YKAK 71 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcC-------cChHHHHHHhhhhhh-hHhhcCceEEeeEEEEE--------EEeC
Confidence 3467777888888999999888654331 111111111222222 23344554322110000 0000
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hhHhHhhhhheeeeeeceeeeecccCCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS 223 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlnk~D~~~ 223 (458)
..+.|-+-+|||||...+.-+...+|+ .+..++|||||+.| |+.++....+...+.|. -|+||+|..+
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLA------ACEGalLvVDAsQGveAQTlAN~YlAle~~LeIi-PViNKIDLP~ 142 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLA------ACEGALLVVDASQGVEAQTLANVYLALENNLEII-PVLNKIDLPA 142 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHh------hCCCcEEEEECccchHHHHHHHHHHHHHcCcEEE-EeeecccCCC
Confidence 114688999999999876554444443 25889999999877 45555555665566553 6899999753
No 461
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.53 E-value=0.0088 Score=67.01 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=60.9
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
..|+++|.+++||||+...|. |.+..+++- .|+.. . ..... ...+
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~------~~~~~iv~~---~pGvT-------~----d~~~~---------------~~~~ 320 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRIL------GRREAVVED---TPGVT-------R----DRVSY---------------DAEW 320 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCceeecC---CCCee-------E----EEEEE---------------EEEE
Confidence 578999999999999998886 444333321 11110 0 00000 0012
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHH--HHhhcCcceEEEEEeccchhhH--hHhhhhheeeeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~--l~~~~~~~~vllVvda~~g~~~--~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
.+..+.++||||.......+...+.. ....-.+|.+++|+|+..+... ...+..+...-...-+|+||+|..
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 45678999999965311111111111 1112246899999999654211 112222222111234788999974
No 462
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.53 E-value=0.0055 Score=59.74 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=23.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK 96 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~ 96 (458)
++.+++++|++|+||||++..++..+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 3558899999999999999999877663
No 463
>PRK06547 hypothetical protein; Provisional
Probab=96.53 E-value=0.0022 Score=58.96 Aligned_cols=38 Identities=34% Similarity=0.387 Sum_probs=29.9
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.++.+|+++|.+||||||++..|+..+ | +.+++.|.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~---~--~~~~~~d~~~ 50 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART---G--FQLVHLDDLY 50 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh---C--CCeeccccee
Confidence 357899999999999999999998763 2 4566777543
No 464
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.52 E-value=0.0039 Score=55.38 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.2
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|++.|.+||||||+...|.
T Consensus 2 ki~liG~~~~GKSsli~~l~ 21 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFM 21 (161)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999999998774
No 465
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.52 E-value=0.0032 Score=56.84 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.7
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-++++|.+|+||||++..+.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~ 25 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFT 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57889999999999998774
No 466
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.52 E-value=0.0097 Score=60.26 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=31.2
Q ss_pred eEEEe--eccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 71 TVILL--AGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 71 ~iI~i--~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
.||.+ ...||+|||+++..|+.+|.++|++|.++.=
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsR 87 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSR 87 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECC
Confidence 36666 3569999999999999999999999999874
No 467
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.51 E-value=0.0067 Score=55.93 Aligned_cols=20 Identities=50% Similarity=0.690 Sum_probs=17.2
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+||||||+...+.
T Consensus 19 kv~lvG~~~vGKTsli~~~~ 38 (182)
T PTZ00133 19 RILMVGLDAAGKTTILYKLK 38 (182)
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 47888999999999987773
No 468
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.51 E-value=0.0053 Score=62.89 Aligned_cols=37 Identities=38% Similarity=0.662 Sum_probs=32.1
Q ss_pred eEEEeeccccccchhHhhHHHHHH--HhcCCceEEeecc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYL--KKQGKSCMLVAGD 107 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L--~~~G~kVllVd~D 107 (458)
.+++|.|.+|+|||.++..|+..+ ...+.+++++...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n 40 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGN 40 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEec
Confidence 578899999999999999999999 6778888877654
No 469
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.51 E-value=0.0043 Score=58.36 Aligned_cols=114 Identities=20% Similarity=0.213 Sum_probs=61.8
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
.-|++.|.+|+||||++..|....-..++...++..++. ...... .
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~----------------~~~~~~------------------~ 51 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPA----------------KTIEPY------------------R 51 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEE----------------EEEEeC------------------C
Confidence 468888999999999999987655544444332222110 000000 0
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhh-------hhhee-eeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV-------TTFNI-EIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~-------~~~~~-~~~i~GvIlnk~D~~ 222 (458)
..+++.++||+|..... ++.. .....++.+++|.|........+.. ..... ... .-++.||+|..
T Consensus 52 ~~~~~~~~Dt~gq~~~~-----~~~~-~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~ 124 (219)
T COG1100 52 RNIKLQLWDTAGQEEYR-----SLRP-EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLF 124 (219)
T ss_pred CEEEEEeecCCCHHHHH-----HHHH-HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCce-EEEEecccccc
Confidence 14678999999975321 1111 1223467888888875432222222 11111 122 33778999976
Q ss_pred CCC
Q 012680 223 SRG 225 (458)
Q Consensus 223 ~~~ 225 (458)
.+.
T Consensus 125 ~~~ 127 (219)
T COG1100 125 DEQ 127 (219)
T ss_pred cch
Confidence 443
No 470
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.49 E-value=0.0048 Score=55.36 Aligned_cols=19 Identities=53% Similarity=0.761 Sum_probs=16.5
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+||||||+...+.
T Consensus 3 v~~~G~~~~GKTsli~~l~ 21 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLK 21 (159)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6778999999999998773
No 471
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.49 E-value=0.0056 Score=54.59 Aligned_cols=19 Identities=26% Similarity=0.644 Sum_probs=17.1
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|++.|.+||||||++.++.
T Consensus 3 i~v~G~~~~GKTsli~~~~ 21 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFV 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999998885
No 472
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.49 E-value=0.011 Score=56.18 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=29.2
Q ss_pred eEeccCCCeEEEeeccccccchhHhhHHH--HHHHhcCCce
Q 012680 63 LVFAKSRPTVILLAGLQGVGKTTVSAKLA--NYLKKQGKSC 101 (458)
Q Consensus 63 ~~~~~~~p~iI~i~G~~GsGKTT~a~~LA--~~L~~~G~kV 101 (458)
+.+....+++++++|+.|+||||+...++ ..++..|.-|
T Consensus 22 ~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 22 TEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred EEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 33434345899999999999999999888 4566667543
No 473
>PLN02348 phosphoribulokinase
Probab=96.48 E-value=0.0034 Score=64.67 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcC---------------CceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG---------------KSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G---------------~kVllVd~D~~r 110 (458)
..|.+|.|+|.+||||||++..|+..|...+ ..+.++..|-|.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 4678999999999999999999999997542 468889998764
No 474
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.47 E-value=0.0047 Score=55.43 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=17.5
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+||||||++..|.
T Consensus 2 ki~viG~~~~GKSsl~~~l~ 21 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYV 21 (172)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37889999999999998875
No 475
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.47 E-value=0.0056 Score=56.43 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=36.2
Q ss_pred cCCcEEEEeCCccccccHHHHHHH-HHHHhhcCcceEEEEEeccchhhHh---Hhhhhhee-----eeeeceeeeecccC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDEL-KDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI-----EIGITGAILTKLDG 221 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el-~~l~~~~~~~~vllVvda~~g~~~~---~~~~~~~~-----~~~i~GvIlnk~D~ 221 (458)
.++.+.|+|+||.... ..+ ... ...++.+++|+|++...+.. .....+.. .. ..-+|.||+|.
T Consensus 59 ~~~~~~i~D~~Gq~~~-----~~~~~~~--~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~-piilv~NK~Dl 130 (181)
T PLN00223 59 KNISFTVWDVGGQDKI-----RPLWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-VLLVFANKQDL 130 (181)
T ss_pred CCEEEEEEECCCCHHH-----HHHHHHH--hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCC-CEEEEEECCCC
Confidence 3577999999996321 111 111 12358899999996543222 22222211 12 23478899997
Q ss_pred CC
Q 012680 222 DS 223 (458)
Q Consensus 222 ~~ 223 (458)
..
T Consensus 131 ~~ 132 (181)
T PLN00223 131 PN 132 (181)
T ss_pred CC
Confidence 53
No 476
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.46 E-value=0.014 Score=60.93 Aligned_cols=141 Identities=23% Similarity=0.284 Sum_probs=77.3
Q ss_pred HHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccc
Q 012680 46 KIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG 125 (458)
Q Consensus 46 ~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~g 125 (458)
+.+.+++.+++......--+ ..+.-++++|+|.+|||++..+|+ ++...+|. |. |++..+
T Consensus 195 ~~~~~~l~~ll~~~~~g~il--r~G~kvvIiG~PNvGKSSLLNaL~------~~d~AIVT-dI--~GTTRD--------- 254 (454)
T COG0486 195 EELIAELDELLATAKQGKIL--REGLKVVIIGRPNVGKSSLLNALL------GRDRAIVT-DI--AGTTRD--------- 254 (454)
T ss_pred HHHHHHHHHHHHhhhhhhhh--hcCceEEEECCCCCcHHHHHHHHh------cCCceEec-CC--CCCccc---------
Confidence 34555666665432211111 135678899999999999998887 55556554 21 121111
Q ss_pred cceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCccccccH--HHHHHHHHHHhhcCcceEEEEEeccch--hhHhHh
Q 012680 126 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK--AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL 201 (458)
Q Consensus 126 v~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~--~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~ 201 (458)
++...- .-.++-+.|+||+|.=..+. +-..--+....+-.+|-+++|+|++.. ......
T Consensus 255 --viee~i---------------~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~ 317 (454)
T COG0486 255 --VIEEDI---------------NLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL 317 (454)
T ss_pred --eEEEEE---------------EECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH
Confidence 111100 01578899999999754321 111111334444457999999999663 222222
Q ss_pred hhhheeeeeeceeeeecccCCCC
Q 012680 202 VTTFNIEIGITGAILTKLDGDSR 224 (458)
Q Consensus 202 ~~~~~~~~~i~GvIlnk~D~~~~ 224 (458)
........+ .-+|+||.|....
T Consensus 318 ~~~~~~~~~-~i~v~NK~DL~~~ 339 (454)
T COG0486 318 IELLPKKKP-IIVVLNKADLVSK 339 (454)
T ss_pred HHhcccCCC-EEEEEechhcccc
Confidence 231111122 3489999997643
No 477
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.46 E-value=0.0077 Score=66.20 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=35.2
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hh--HhHhhhhheeeeeeceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QE--AAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~--~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
+..+.||||||.-. +...+ +......|.+++|+|+..+ ++ .+..+..+ .....-||+||+|..
T Consensus 50 g~~i~~IDtPGhe~----fi~~m--~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l--gi~~iIVVlNKiDlv 117 (614)
T PRK10512 50 GRVLGFIDVPGHEK----FLSNM--LAGVGGIDHALLVVACDDGVMAQTREHLAILQLT--GNPMLTVALTKADRV 117 (614)
T ss_pred CcEEEEEECCCHHH----HHHHH--HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCccC
Confidence 34578999999632 22222 1223345888999998543 22 12222211 222223899999974
No 478
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.45 E-value=0.011 Score=54.03 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=27.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.++|+++|.+||||||++..|+..+. ..-+.++.|.+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~---~~~~~~~~D~~~ 39 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA---EPWLHFGVDSFI 39 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC---CCccccCccHHH
Confidence 45899999999999999988876653 222345666544
No 479
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=96.45 E-value=0.012 Score=59.93 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.4
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.=|.++|.+++||||+..+|.
T Consensus 159 adVglVG~PNaGKSTLln~ls 179 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVS 179 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHH
Confidence 457889999999999998885
No 480
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.45 E-value=0.017 Score=52.06 Aligned_cols=33 Identities=33% Similarity=0.612 Sum_probs=26.6
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
|+++|++||||||++..|+..+. ..+++.|.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-----~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-----AKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-----CeEEeCcccc
Confidence 46789999999999999987763 4567888664
No 481
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.45 E-value=0.0059 Score=66.68 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.0
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
++.+|++.|++++||||+..+|.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~ 25 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIR 25 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34589999999999999998885
No 482
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.44 E-value=0.0042 Score=55.25 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=17.1
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
++++|.+|+||||+...|.
T Consensus 3 i~v~G~~~~GKSsli~~l~ 21 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFT 21 (161)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999998875
No 483
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.44 E-value=0.014 Score=59.53 Aligned_cols=116 Identities=15% Similarity=0.231 Sum_probs=59.2
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccccCchhhhHHhhhccccccceecC-CCccChHHHHHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQIAKQGLEE 147 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~-~~~~~~~~i~~~~l~~ 147 (458)
..+++++|++||||||+...|..++.+. +.+++.+ -|+. +... .. ....+.. ...... ....+++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-Edp~-----E~~~--~~--~~~~i~q~evg~~~-~~~~~~l~~ 190 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-EDPI-----EYVH--RN--KRSLINQREVGLDT-LSFANALRA 190 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-cCCh-----hhhc--cC--ccceEEccccCCCC-cCHHHHHHH
Confidence 4689999999999999999998877653 4455433 3321 1110 00 0111110 000000 112334444
Q ss_pred HHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhh
Q 012680 148 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV 202 (458)
Q Consensus 148 ~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~ 202 (458)
+...+.|++++|=+. |.+..... +.....-..++.++.+.....+...+
T Consensus 191 ~lr~~pd~i~vgEir----d~~~~~~~--l~aa~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 191 ALREDPDVILIGEMR----DLETVELA--LTAAETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred hhccCCCEEEEeCCC----CHHHHHHH--HHHHHcCCcEEEEEcCCCHHHHHHHH
Confidence 445789999999875 22222221 11222224466666775444444433
No 484
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.39 E-value=0.024 Score=59.94 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=32.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhc--CCceEEeeccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDV 108 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~--G~kVllVd~D~ 108 (458)
.-+++.|++|+|||+++.+++..+.+. +.+|++++++-
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 348899999999999999999988765 67899888763
No 485
>PRK07261 topology modulation protein; Provisional
Probab=96.38 E-value=0.023 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEeeccccccchhHhhHHHHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
.|+++|.+||||||++..|+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987654
No 486
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.38 E-value=0.0067 Score=54.49 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.9
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
+++.|.+|+||||+...+.
T Consensus 5 i~iiG~~~vGKTsli~~~~ 23 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFT 23 (166)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6788999999999998875
No 487
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=96.37 E-value=0.01 Score=54.63 Aligned_cols=20 Identities=45% Similarity=0.627 Sum_probs=17.4
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+||||||+...+.
T Consensus 5 kv~~vG~~~~GKTsli~~~~ 24 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLK 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47788999999999998874
No 488
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0022 Score=57.87 Aligned_cols=38 Identities=45% Similarity=0.690 Sum_probs=28.6
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchh
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 113 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a 113 (458)
+|.++|++||||||++..||..+. ++ ++-.+++||.-+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g---l~-~vsaG~iFR~~A 39 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG---LK-LVSAGTIFREMA 39 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC---Cc-eeeccHHHHHHH
Confidence 688999999999999999987764 33 345567666433
No 489
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.34 E-value=0.012 Score=52.89 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=17.4
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|++.|.+|+||||+...|.
T Consensus 3 ki~i~G~~~~GKSsli~~l~ 22 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYA 22 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37889999999999998775
No 490
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.34 E-value=0.0081 Score=53.69 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=17.8
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-++++|.+||||||+..+|.
T Consensus 5 ki~vvG~~~~GKSsli~~l~ 24 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFT 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47789999999999998885
No 491
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.33 E-value=0.0025 Score=59.90 Aligned_cols=39 Identities=31% Similarity=0.549 Sum_probs=31.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
.+.+|+++|.+|+||||++..||..+ |..+ ++..|..|.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~~r~ 40 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDYLRE 40 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHHHHH
Confidence 36799999999999999999998764 5544 688886553
No 492
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=96.33 E-value=0.013 Score=59.46 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.6
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+++||||+..+|.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt 178 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVS 178 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHh
Confidence 457888999999999998885
No 493
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.33 E-value=0.012 Score=56.21 Aligned_cols=19 Identities=26% Similarity=0.732 Sum_probs=17.0
Q ss_pred EEeeccccccchhHhhHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA 91 (458)
|+++|.+|+||||++..+.
T Consensus 3 I~lvG~~gvGKTsLi~~~~ 21 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFT 21 (221)
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 7889999999999998774
No 494
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.062 Score=57.68 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK 96 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~ 96 (458)
-+..++++|++|+||||+|..+|..+--
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3567899999999999999999988753
No 495
>PRK14531 adenylate kinase; Provisional
Probab=96.32 E-value=0.026 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.3
Q ss_pred eEEEeeccccccchhHhhHHHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
..|+++|++||||||++..||..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358889999999999999998776
No 496
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.32 E-value=0.0032 Score=59.31 Aligned_cols=34 Identities=35% Similarity=0.574 Sum_probs=26.7
Q ss_pred EEEeeccccccchhHhhHHHHHH--------HhcCCceEEee
Q 012680 72 VILLAGLQGVGKTTVSAKLANYL--------KKQGKSCMLVA 105 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L--------~~~G~kVllVd 105 (458)
+.++.|+||+||||+++.++..+ ...+.+++++.
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~ 60 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS 60 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeec
Confidence 67888999999999999999988 45688888776
No 497
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.0055 Score=62.86 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=67.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCC--ccChHHHH-----Hh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT--EVKPSQIA-----KQ 143 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~--~~~~~~i~-----~~ 143 (458)
-.+++.|+.-+||||+...|.+.+.. || +..++.+...+...|-..+...- .....+.- ..
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~-------id-----~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~ 75 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGE-------ID-----KRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDV 75 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCC-------CC-----HHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEE
Confidence 45677799999999999999765432 21 11233333333323322111000 00000000 00
Q ss_pred hHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch----------hhHhHhhhhheeeeeece
Q 012680 144 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG----------QEAAALVTTFNIEIGITG 213 (458)
Q Consensus 144 ~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g----------~~~~~~~~~~~~~~~i~G 213 (458)
+...+..+.|.+-||||||.= ++...+ +..+.++|..+|||||..+ |.-.........++.-.-
T Consensus 76 ~~~~fet~k~~~tIiDaPGHr----dFvknm--ItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lI 149 (428)
T COG5256 76 AHSKFETDKYNFTIIDAPGHR----DFVKNM--ITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLI 149 (428)
T ss_pred EEEEeecCCceEEEeeCCchH----HHHHHh--hcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEE
Confidence 111122356889999999932 222222 3334456889999999554 211111111111233344
Q ss_pred eeeecccCCC
Q 012680 214 AILTKLDGDS 223 (458)
Q Consensus 214 vIlnk~D~~~ 223 (458)
|.+||+|...
T Consensus 150 VavNKMD~v~ 159 (428)
T COG5256 150 VAVNKMDLVS 159 (428)
T ss_pred EEEEcccccc
Confidence 7889999764
No 498
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.31 E-value=0.0055 Score=55.33 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=17.3
Q ss_pred EEeeccccccchhHhhHHHHH
Q 012680 73 ILLAGLQGVGKTTVSAKLANY 93 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~ 93 (458)
|+|+|.+|+||||++..|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999866
No 499
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.30 E-value=0.0051 Score=57.36 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=30.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEe
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 104 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV 104 (458)
+.+|++.|..||||||++..|+..|...|+.+.+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 56899999999999999999999998888766643
No 500
>PRK12377 putative replication protein; Provisional
Probab=96.29 E-value=0.0039 Score=60.76 Aligned_cols=75 Identities=27% Similarity=0.432 Sum_probs=50.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
..+++.|++|+|||+++.+++..+.+.|++|.++... .....+... +... . ...+.+..+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~----~l~~~l~~~--------~~~~--~----~~~~~l~~l-- 161 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP----DVMSRLHES--------YDNG--Q----SGEKFLQEL-- 161 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH----HHHHHHHHH--------Hhcc--c----hHHHHHHHh--
Confidence 4789999999999999999999999999999888753 223332211 0000 0 011223333
Q ss_pred cCCcEEEEeCCcccc
Q 012680 151 KNVDVVIVDTAGRLQ 165 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~ 165 (458)
..+|++|||=-|...
T Consensus 162 ~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 162 CKVDLLVLDEIGIQR 176 (248)
T ss_pred cCCCEEEEcCCCCCC
Confidence 579999999877654
Done!