Query 012680
Match_columns 458
No_of_seqs 467 out of 4181
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 1E-86 3.5E-91 689.5 30.6 403 1-411 32-437 (443)
2 3kl4_A SRP54, signal recogniti 100.0 1.8E-84 6.1E-89 672.8 26.0 397 1-399 28-432 (433)
3 2xxa_A Signal recognition part 100.0 9.3E-79 3.2E-83 632.7 32.4 398 1-401 31-432 (433)
4 2ffh_A Protein (FFH); SRP54, s 100.0 3.8E-79 1.3E-83 632.0 26.7 388 1-401 31-418 (425)
5 2j37_W Signal recognition part 100.0 7.7E-77 2.6E-81 626.9 10.5 453 1-456 32-497 (504)
6 2v3c_C SRP54, signal recogniti 100.0 1.6E-72 5.3E-77 585.7 13.3 395 1-400 30-427 (432)
7 1j8m_F SRP54, signal recogniti 100.0 6.1E-41 2.1E-45 332.6 20.3 265 1-266 29-296 (297)
8 1zu4_A FTSY; GTPase, signal re 100.0 2.1E-39 7.3E-44 324.7 20.0 262 1-269 37-313 (320)
9 1vma_A Cell division protein F 100.0 1.3E-38 4.6E-43 316.8 20.2 252 1-265 48-305 (306)
10 3e70_C DPA, signal recognition 100.0 1.5E-37 5.2E-42 312.0 19.2 266 1-267 56-326 (328)
11 1ls1_A Signal recognition part 100.0 2.7E-37 9.4E-42 306.2 19.9 265 1-267 31-295 (295)
12 2jqe_A SRP54, signal recogniti 100.0 1.1E-38 3.6E-43 270.3 2.0 115 289-409 2-118 (119)
13 1hq1_A Signal recognition part 100.0 4E-38 1.4E-42 261.0 3.8 103 296-400 1-104 (105)
14 1mfq_C SRP54, signal recogniti 100.0 1E-37 3.5E-42 266.5 5.3 108 294-401 12-124 (129)
15 1qb2_A SRP54, human signal rec 100.0 2.5E-37 8.5E-42 258.2 6.5 104 296-399 1-109 (109)
16 2yhs_A FTSY, cell division pro 100.0 1.1E-35 3.9E-40 310.1 19.7 264 1-268 228-497 (503)
17 2og2_A Putative signal recogni 100.0 4.4E-34 1.5E-38 289.6 20.1 261 1-265 90-359 (359)
18 1rj9_A FTSY, signal recognitio 100.0 1.4E-33 4.7E-38 280.6 16.9 254 1-265 32-303 (304)
19 3b9q_A Chloroplast SRP recepto 100.0 1E-32 3.6E-37 274.1 19.7 261 1-265 33-302 (302)
20 2px0_A Flagellar biosynthesis 100.0 1.5E-32 5.1E-37 272.3 19.9 252 1-265 42-296 (296)
21 1dul_A Signal recognition part 99.9 6.5E-28 2.2E-32 184.1 4.7 66 332-399 4-69 (69)
22 3la6_A Tyrosine-protein kinase 99.7 1.2E-16 4.2E-21 157.1 12.7 148 68-224 90-269 (286)
23 3bfv_A CAPA1, CAPB2, membrane 99.7 5.3E-16 1.8E-20 151.4 14.8 147 68-223 80-258 (271)
24 3cio_A ETK, tyrosine-protein k 99.7 7.3E-16 2.5E-20 152.5 13.8 150 68-225 102-282 (299)
25 2ph1_A Nucleotide-binding prot 99.6 3E-16 1E-20 151.9 10.5 169 70-246 18-227 (262)
26 3ea0_A ATPase, para family; al 99.6 2.6E-16 8.9E-21 149.7 9.8 165 69-245 3-205 (245)
27 4dzz_A Plasmid partitioning pr 99.6 7.9E-16 2.7E-20 142.3 12.1 151 71-239 2-161 (206)
28 1hyq_A MIND, cell division inh 99.6 1.2E-15 4.1E-20 147.0 10.8 165 71-246 3-197 (263)
29 3k9g_A PF-32 protein; ssgcid, 99.6 1.6E-15 5.5E-20 146.7 11.7 170 68-251 25-236 (267)
30 3end_A Light-independent proto 99.6 1E-15 3.6E-20 151.3 10.2 167 69-247 40-246 (307)
31 3fwy_A Light-independent proto 99.6 6.9E-16 2.3E-20 153.7 8.4 168 69-248 47-254 (314)
32 1g3q_A MIND ATPase, cell divis 99.6 1.4E-15 4.7E-20 144.1 9.3 165 71-246 3-198 (237)
33 3q9l_A Septum site-determining 99.6 3.1E-15 1E-19 143.6 11.3 167 71-247 3-213 (260)
34 2oze_A ORF delta'; para, walke 99.6 3.9E-15 1.3E-19 146.3 11.2 152 77-237 44-242 (298)
35 2afh_E Nitrogenase iron protei 99.6 3.7E-15 1.3E-19 146.1 10.6 170 70-246 2-212 (289)
36 1cp2_A CP2, nitrogenase iron p 99.6 4E-15 1.4E-19 143.8 10.4 169 71-246 2-209 (269)
37 3kjh_A CO dehydrogenase/acetyl 99.6 3.2E-15 1.1E-19 142.1 8.0 155 73-239 3-211 (254)
38 1wcv_1 SOJ, segregation protei 99.5 1.8E-14 6.2E-19 138.8 10.3 162 69-239 5-201 (257)
39 3pg5_A Uncharacterized protein 99.5 7.8E-14 2.7E-18 141.5 12.9 42 71-112 2-44 (361)
40 2xj4_A MIPZ; replication, cell 99.5 8E-14 2.7E-18 136.6 10.2 114 70-192 4-135 (286)
41 3ug7_A Arsenical pump-driving 99.5 2.2E-13 7.7E-18 137.5 12.9 41 69-109 25-65 (349)
42 3cwq_A Para family chromosome 99.5 6.8E-14 2.3E-18 131.0 8.3 143 72-239 3-152 (209)
43 1byi_A Dethiobiotin synthase; 99.5 1E-13 3.6E-18 130.1 9.0 171 72-249 3-207 (224)
44 3zq6_A Putative arsenical pump 99.5 3.5E-13 1.2E-17 134.6 13.0 40 70-109 14-53 (324)
45 3fkq_A NTRC-like two-domain pr 99.4 8.4E-13 2.9E-17 134.4 15.1 175 65-250 138-352 (373)
46 3ez9_A Para; DNA binding, wing 99.4 8.8E-14 3E-18 143.0 6.4 163 68-239 109-341 (403)
47 2woo_A ATPase GET3; tail-ancho 99.4 1.3E-12 4.3E-17 130.9 14.4 41 69-109 18-58 (329)
48 3iqw_A Tail-anchored protein t 99.4 9.2E-13 3.1E-17 132.2 12.7 42 69-110 15-56 (334)
49 2woj_A ATPase GET3; tail-ancho 99.4 1E-12 3.5E-17 132.9 12.9 40 70-109 18-59 (354)
50 3ez2_A Plasmid partition prote 99.4 7E-13 2.4E-17 136.0 11.7 162 69-239 107-338 (398)
51 3p32_A Probable GTPase RV1496/ 99.4 2E-12 6.7E-17 130.8 11.2 143 69-222 78-230 (355)
52 1yrb_A ATP(GTP)binding protein 99.3 2.3E-12 7.9E-17 123.6 9.2 149 69-221 13-183 (262)
53 1ihu_A Arsenical pump-driving 99.3 4.3E-12 1.5E-16 136.6 10.2 42 68-109 6-47 (589)
54 3io3_A DEHA2D07832P; chaperone 99.3 5.6E-12 1.9E-16 127.1 10.0 41 69-109 17-59 (348)
55 2p67_A LAO/AO transport system 99.3 6.2E-12 2.1E-16 126.5 9.0 236 68-316 54-315 (341)
56 3igf_A ALL4481 protein; two-do 99.3 2.6E-11 9E-16 123.2 13.0 39 70-109 2-40 (374)
57 3fgn_A Dethiobiotin synthetase 99.2 1.1E-11 3.8E-16 119.4 8.0 174 68-250 24-226 (251)
58 3of5_A Dethiobiotin synthetase 99.2 1.2E-11 4.1E-16 117.5 7.9 170 69-246 3-206 (228)
59 1ihu_A Arsenical pump-driving 99.1 8.9E-11 3E-15 126.3 5.8 42 70-111 327-368 (589)
60 3qxc_A Dethiobiotin synthetase 99.0 1.3E-09 4.5E-14 104.3 11.2 148 69-222 20-202 (242)
61 2wsm_A Hydrogenase expression/ 98.8 1E-08 3.4E-13 95.4 10.6 135 69-222 29-167 (221)
62 2www_A Methylmalonic aciduria 98.8 9.3E-09 3.2E-13 103.6 9.5 142 69-222 73-225 (349)
63 3vqt_A RF-3, peptide chain rel 98.8 7.5E-10 2.6E-14 118.1 -0.7 148 69-239 30-184 (548)
64 2r8r_A Sensor protein; KDPD, P 98.7 1.6E-08 5.6E-13 95.3 8.3 90 71-165 7-97 (228)
65 2qm8_A GTPase/ATPase; G protei 98.7 2.3E-08 7.9E-13 100.3 9.6 143 68-221 53-205 (337)
66 3j25_A Tetracycline resistance 98.7 1.1E-08 3.8E-13 111.0 6.1 146 70-239 2-151 (638)
67 4a0g_A Adenosylmethionine-8-am 98.6 7.5E-08 2.6E-12 107.4 9.7 96 152-250 201-299 (831)
68 4fn5_A EF-G 1, elongation fact 98.6 1E-07 3.5E-12 104.7 10.5 226 69-314 12-263 (709)
69 2rdo_7 EF-G, elongation factor 98.5 2E-07 7E-12 102.1 9.6 149 69-237 9-164 (704)
70 2xex_A Elongation factor G; GT 98.4 2.5E-07 8.4E-12 101.4 8.3 221 69-314 9-252 (693)
71 1dar_A EF-G, elongation factor 98.4 2.6E-07 8.9E-12 101.1 7.8 222 69-314 11-254 (691)
72 2hf9_A Probable hydrogenase ni 98.4 8.4E-07 2.9E-11 82.5 8.8 136 69-222 37-177 (226)
73 1u94_A RECA protein, recombina 98.3 3.9E-06 1.3E-10 84.6 11.8 107 45-165 44-154 (356)
74 2dr3_A UPF0273 protein PH0284; 98.2 8.9E-06 3.1E-10 76.2 12.6 52 51-109 11-62 (247)
75 1xp8_A RECA protein, recombina 98.2 8.2E-06 2.8E-10 82.5 13.0 108 45-165 55-165 (366)
76 1xjc_A MOBB protein homolog; s 98.2 1.5E-06 5.3E-11 78.3 6.8 41 69-109 3-43 (169)
77 2cvh_A DNA repair and recombin 98.2 1.3E-05 4.3E-10 74.0 12.5 49 50-108 7-55 (220)
78 2h5e_A Peptide chain release f 98.2 3.7E-07 1.3E-11 96.9 2.2 150 69-239 12-166 (529)
79 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 5.2E-06 1.8E-10 79.7 9.9 42 69-110 3-44 (260)
80 3hr8_A Protein RECA; alpha and 98.1 2.7E-05 9.4E-10 78.3 14.6 58 44-108 41-99 (356)
81 2zr9_A Protein RECA, recombina 98.1 1.1E-05 3.7E-10 81.1 11.4 108 45-165 42-152 (349)
82 3izq_1 HBS1P, elongation facto 98.1 1.2E-05 4E-10 86.8 11.6 50 3-55 55-104 (611)
83 4a1f_A DNAB helicase, replicat 98.1 3.2E-05 1.1E-09 77.3 13.9 183 17-221 7-207 (338)
84 2w0m_A SSO2452; RECA, SSPF, un 98.1 2.7E-05 9.3E-10 72.0 12.6 53 50-109 10-62 (235)
85 3k53_A Ferrous iron transport 98.1 2.9E-06 1E-10 81.8 5.7 134 70-240 3-143 (271)
86 3bgw_A DNAB-like replicative h 98.1 7.9E-05 2.7E-09 77.2 16.7 42 69-110 196-237 (444)
87 3iev_A GTP-binding protein ERA 98.1 1.1E-05 3.9E-10 79.4 9.7 116 69-222 9-135 (308)
88 3bh0_A DNAB-like replicative h 98.0 8.7E-05 3E-09 73.3 15.8 40 69-108 67-106 (315)
89 3tr5_A RF-3, peptide chain rel 98.0 9.2E-07 3.2E-11 93.8 0.4 150 69-238 12-165 (528)
90 2i1q_A DNA repair and recombin 98.0 9.3E-05 3.2E-09 73.0 14.3 139 11-164 42-216 (322)
91 2z43_A DNA repair and recombin 98.0 3.8E-05 1.3E-09 76.2 11.4 106 50-165 94-216 (324)
92 2obn_A Hypothetical protein; s 98.0 1.8E-05 6.1E-10 79.1 9.0 156 70-239 152-331 (349)
93 1v5w_A DMC1, meiotic recombina 98.0 6.2E-05 2.1E-09 75.3 12.9 106 50-165 109-232 (343)
94 1gvn_B Zeta; postsegregational 97.9 2.5E-05 8.6E-10 76.2 9.6 66 36-110 5-70 (287)
95 2e87_A Hypothetical protein PH 97.9 7.3E-06 2.5E-10 82.4 5.9 23 69-91 166-188 (357)
96 2c78_A Elongation factor TU-A; 97.9 1.5E-05 5.2E-10 81.5 8.3 127 70-222 11-141 (405)
97 1jwy_B Dynamin A GTPase domain 97.9 5.4E-05 1.8E-09 74.1 11.9 21 71-91 25-45 (315)
98 3iby_A Ferrous iron transport 97.9 1.7E-05 5.6E-10 76.2 7.8 89 152-241 47-145 (256)
99 2dy1_A Elongation factor G; tr 97.9 1.9E-05 6.5E-10 86.0 9.1 225 69-324 8-253 (665)
100 3io5_A Recombination and repai 97.9 1.9E-05 6.6E-10 78.0 8.2 103 49-165 11-124 (333)
101 1n0w_A DNA repair protein RAD5 97.9 4.8E-05 1.7E-09 71.1 10.6 53 49-108 10-68 (243)
102 2q6t_A DNAB replication FORK h 97.9 0.00024 8.2E-09 73.4 16.2 40 69-108 199-239 (444)
103 2r6a_A DNAB helicase, replicat 97.9 0.00029 1E-08 73.0 16.9 40 69-108 202-242 (454)
104 3lda_A DNA repair protein RAD5 97.9 8.5E-05 2.9E-09 75.9 12.5 107 49-165 164-286 (400)
105 2ged_A SR-beta, signal recogni 97.9 2.3E-05 8E-10 70.4 7.2 45 44-91 25-69 (193)
106 2xtp_A GTPase IMAP family memb 97.9 3.1E-05 1.1E-09 73.8 8.3 23 69-91 21-43 (260)
107 3t34_A Dynamin-related protein 97.8 2.7E-05 9.3E-10 78.2 7.9 74 152-225 135-219 (360)
108 2zts_A Putative uncharacterize 97.8 0.00023 7.8E-09 66.6 13.0 53 50-109 17-70 (251)
109 1wf3_A GTP-binding protein; GT 97.8 6.5E-05 2.2E-09 73.8 9.4 117 71-223 8-131 (301)
110 2orw_A Thymidine kinase; TMTK, 97.8 9.6E-05 3.3E-09 67.2 9.5 37 70-106 3-39 (184)
111 3lxx_A GTPase IMAP family memb 97.7 6.5E-05 2.2E-09 70.6 8.5 23 69-91 28-50 (239)
112 3i8s_A Ferrous iron transport 97.7 7.7E-05 2.6E-09 72.1 8.6 134 70-240 3-146 (274)
113 2p5t_B PEZT; postsegregational 97.7 0.00039 1.3E-08 66.1 12.7 42 68-112 30-71 (253)
114 1d2e_A Elongation factor TU (E 97.7 0.0001 3.6E-09 75.1 9.1 124 71-222 4-132 (397)
115 3a1s_A Iron(II) transport prot 97.7 5.3E-05 1.8E-09 72.7 6.5 132 71-239 6-143 (258)
116 3lxw_A GTPase IMAP family memb 97.7 3.2E-05 1.1E-09 73.6 4.8 23 69-91 20-42 (247)
117 2b8t_A Thymidine kinase; deoxy 97.6 0.00013 4.5E-09 68.6 8.9 102 69-179 11-114 (223)
118 3j2k_7 ERF3, eukaryotic polype 97.6 3.7E-05 1.3E-09 79.6 5.6 24 69-92 16-39 (439)
119 3ec2_A DNA replication protein 97.6 0.00014 4.7E-09 65.2 8.7 38 70-107 38-76 (180)
120 1ega_A Protein (GTP-binding pr 97.6 7.1E-05 2.4E-09 73.5 7.2 118 70-223 8-130 (301)
121 1q57_A DNA primase/helicase; d 97.6 0.00038 1.3E-08 73.1 13.2 40 69-108 241-281 (503)
122 1cr0_A DNA primase/helicase; R 97.6 0.00039 1.3E-08 67.5 12.4 40 69-108 34-74 (296)
123 4a74_A DNA repair and recombin 97.6 0.00042 1.4E-08 63.9 12.0 53 49-108 11-69 (231)
124 2i3b_A HCR-ntpase, human cance 97.6 3.2E-05 1.1E-09 70.9 4.1 27 72-98 3-29 (189)
125 1g5t_A COB(I)alamin adenosyltr 97.6 0.00039 1.3E-08 63.9 11.3 90 69-163 28-131 (196)
126 3cb4_D GTP-binding protein LEP 97.6 8.8E-05 3E-09 79.6 7.7 132 69-223 3-137 (599)
127 2dyk_A GTP-binding protein; GT 97.6 0.00023 7.9E-09 61.4 9.1 20 72-91 3-22 (161)
128 2wji_A Ferrous iron transport 97.6 0.00013 4.6E-09 64.1 7.2 70 152-222 49-121 (165)
129 1nrj_B SR-beta, signal recogni 97.6 0.00016 5.4E-09 66.4 7.9 23 69-91 11-33 (218)
130 2aka_B Dynamin-1; fusion prote 97.6 0.00049 1.7E-08 66.5 11.7 22 70-91 26-47 (299)
131 4dhe_A Probable GTP-binding pr 97.6 0.00019 6.4E-09 66.1 8.4 22 70-91 29-50 (223)
132 2x2e_A Dynamin-1; nitration, h 97.5 0.00025 8.7E-09 71.0 9.9 21 71-91 32-52 (353)
133 2ehv_A Hypothetical protein PH 97.5 0.00022 7.5E-09 66.8 8.8 40 69-108 29-69 (251)
134 2ywe_A GTP-binding protein LEP 97.5 0.00015 5.1E-09 77.8 8.5 128 70-223 6-139 (600)
135 2yvu_A Probable adenylyl-sulfa 97.5 6.9E-05 2.4E-09 67.6 5.1 43 68-110 11-53 (186)
136 2g0t_A Conserved hypothetical 97.5 0.00099 3.4E-08 66.6 13.7 147 70-239 169-331 (350)
137 1np6_A Molybdopterin-guanine d 97.5 8.5E-05 2.9E-09 67.1 5.3 40 70-109 6-45 (174)
138 3uie_A Adenylyl-sulfate kinase 97.5 0.00022 7.7E-09 65.1 8.2 43 69-111 24-66 (200)
139 3def_A T7I23.11 protein; chlor 97.5 0.00011 3.9E-09 70.3 6.2 23 69-91 35-57 (262)
140 1h65_A Chloroplast outer envel 97.5 0.00013 4.4E-09 70.1 6.6 22 70-91 39-60 (270)
141 3b1v_A Ferrous iron uptake tra 97.5 0.0002 7E-09 69.2 8.0 88 152-240 48-141 (272)
142 1tf7_A KAIC; homohexamer, hexa 97.5 0.00035 1.2E-08 73.8 10.5 101 50-162 268-380 (525)
143 3p26_A Elongation factor 1 alp 97.5 0.00018 6.2E-09 75.2 8.2 23 71-93 34-56 (483)
144 2axn_A 6-phosphofructo-2-kinas 97.5 0.00064 2.2E-08 71.8 12.2 43 68-110 33-75 (520)
145 1jny_A EF-1-alpha, elongation 97.5 0.00014 4.7E-09 75.1 6.8 25 69-93 5-29 (435)
146 1xx6_A Thymidine kinase; NESG, 97.4 0.00037 1.3E-08 63.9 8.8 97 69-178 7-105 (191)
147 4dcu_A GTP-binding protein ENG 97.4 0.00013 4.3E-09 75.8 6.3 117 70-222 23-144 (456)
148 1f60_A Elongation factor EEF1A 97.4 0.00036 1.2E-08 72.5 9.6 23 71-93 8-30 (458)
149 2wjg_A FEOB, ferrous iron tran 97.4 0.00018 6.2E-09 64.1 6.4 22 70-91 7-28 (188)
150 1svi_A GTP-binding protein YSX 97.4 0.0007 2.4E-08 60.6 10.2 23 69-91 22-44 (195)
151 1pzn_A RAD51, DNA repair and r 97.4 0.0011 3.7E-08 66.4 12.3 52 49-107 117-174 (349)
152 2qu8_A Putative nucleolar GTP- 97.4 0.00082 2.8E-08 62.4 10.7 23 69-91 28-50 (228)
153 2hjg_A GTP-binding protein ENG 97.4 0.00019 6.6E-09 74.0 6.8 117 72-223 5-125 (436)
154 2elf_A Protein translation elo 97.4 0.00015 5.1E-09 73.4 5.6 22 70-91 21-42 (370)
155 3pqc_A Probable GTP-binding pr 97.4 0.00068 2.3E-08 60.4 9.5 21 71-91 24-44 (195)
156 1nlf_A Regulatory protein REPA 97.4 0.0012 4.2E-08 63.4 11.8 40 69-108 29-78 (279)
157 2ce2_X GTPase HRAS; signaling 97.3 0.00036 1.2E-08 60.1 7.0 20 72-91 5-24 (166)
158 3cmw_A Protein RECA, recombina 97.3 0.00075 2.6E-08 79.8 11.6 89 69-165 731-823 (1706)
159 3bos_A Putative DNA replicatio 97.3 0.00046 1.6E-08 63.7 8.1 40 69-108 51-90 (242)
160 2kjq_A DNAA-related protein; s 97.3 0.00043 1.5E-08 60.7 7.2 38 70-107 36-73 (149)
161 1z0f_A RAB14, member RAS oncog 97.3 0.00036 1.2E-08 61.2 6.8 22 70-91 15-36 (179)
162 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00058 2E-08 67.6 8.8 34 70-106 123-156 (331)
163 3cmu_A Protein RECA, recombina 97.3 0.0005 1.7E-08 82.3 9.7 87 69-162 1426-1515(2050)
164 3lv8_A DTMP kinase, thymidylat 97.3 0.00093 3.2E-08 63.2 9.8 41 68-108 25-65 (236)
165 2lkc_A Translation initiation 97.3 0.00018 6.2E-09 63.3 4.6 23 69-91 7-29 (178)
166 3tkl_A RAS-related protein RAB 97.3 0.00016 5.4E-09 64.9 4.2 22 70-91 16-37 (196)
167 2p5s_A RAS and EF-hand domain 97.3 0.00057 2E-08 61.8 7.9 23 69-91 27-49 (199)
168 3t61_A Gluconokinase; PSI-biol 97.3 0.001 3.4E-08 60.6 9.5 38 69-111 17-54 (202)
169 1nks_A Adenylate kinase; therm 97.3 0.00019 6.4E-09 64.4 4.4 37 71-107 2-38 (194)
170 2il1_A RAB12; G-protein, GDP, 97.3 0.00049 1.7E-08 62.0 7.2 21 71-91 27-47 (192)
171 3cmu_A Protein RECA, recombina 97.3 0.00098 3.3E-08 79.8 11.6 87 69-165 382-474 (2050)
172 2qpt_A EH domain-containing pr 97.3 0.00035 1.2E-08 74.3 7.2 23 69-91 64-86 (550)
173 2j69_A Bacterial dynamin-like 97.2 0.00036 1.2E-08 76.3 7.2 33 69-107 68-100 (695)
174 3sjy_A Translation initiation 97.2 0.00019 6.6E-09 73.2 4.8 23 69-91 7-29 (403)
175 1g16_A RAS-related protein SEC 97.2 0.0004 1.4E-08 60.4 6.1 21 71-91 4-24 (170)
176 1n0u_A EF-2, elongation factor 97.2 0.00027 9.2E-09 78.9 6.2 64 152-222 97-163 (842)
177 3mca_A HBS1, elongation factor 97.2 7.7E-05 2.6E-09 80.1 1.8 25 70-94 177-201 (592)
178 1u8z_A RAS-related protein RAL 97.2 0.00032 1.1E-08 60.6 5.5 21 71-91 5-25 (168)
179 3clv_A RAB5 protein, putative; 97.2 0.00034 1.2E-08 62.5 5.8 24 69-92 6-29 (208)
180 4bas_A ADP-ribosylation factor 97.2 0.00037 1.3E-08 62.6 6.0 23 69-91 16-38 (199)
181 1a7j_A Phosphoribulokinase; tr 97.2 0.00021 7.2E-09 69.7 4.7 42 69-110 4-45 (290)
182 2hxs_A RAB-26, RAS-related pro 97.2 0.00084 2.9E-08 58.9 8.1 22 70-91 6-27 (178)
183 2a9k_A RAS-related protein RAL 97.2 0.00035 1.2E-08 61.8 5.4 22 70-91 18-39 (187)
184 1ky3_A GTP-binding protein YPT 97.2 0.00059 2E-08 60.0 6.7 22 70-91 8-29 (182)
185 1z2a_A RAS-related protein RAB 97.2 0.00019 6.6E-09 62.3 3.4 21 71-91 6-26 (168)
186 2efe_B Small GTP-binding prote 97.2 0.00043 1.5E-08 61.0 5.7 21 71-91 13-33 (181)
187 1zun_B Sulfate adenylate trans 97.2 0.00094 3.2E-08 68.8 9.0 66 151-223 102-171 (434)
188 3t1o_A Gliding protein MGLA; G 97.2 0.00053 1.8E-08 61.2 6.3 66 151-223 72-149 (198)
189 1rz3_A Hypothetical protein rb 97.2 0.00039 1.3E-08 63.6 5.5 42 69-110 21-62 (201)
190 2erx_A GTP-binding protein DI- 97.2 0.00032 1.1E-08 61.0 4.7 21 71-91 4-24 (172)
191 1kht_A Adenylate kinase; phosp 97.1 0.00026 8.9E-09 63.4 4.1 38 70-107 3-40 (192)
192 1knq_A Gluconate kinase; ALFA/ 97.1 0.002 6.9E-08 57.0 9.8 37 69-110 7-43 (175)
193 3zvr_A Dynamin-1; hydrolase, D 97.1 0.0016 5.4E-08 71.6 10.7 73 152-225 149-233 (772)
194 1upt_A ARL1, ADP-ribosylation 97.1 0.0003 1E-08 61.3 4.1 23 69-91 6-28 (171)
195 1m7g_A Adenylylsulfate kinase; 97.1 0.0003 1E-08 64.8 4.3 42 69-110 24-66 (211)
196 1mky_A Probable GTP-binding pr 97.1 0.0011 3.9E-08 68.2 9.1 116 72-222 3-123 (439)
197 1z0j_A RAB-22, RAS-related pro 97.1 0.00037 1.3E-08 60.6 4.7 21 71-91 7-27 (170)
198 2pez_A Bifunctional 3'-phospho 97.1 0.00035 1.2E-08 62.4 4.6 42 69-110 4-45 (179)
199 3gee_A MNME, tRNA modification 97.1 0.00032 1.1E-08 73.3 4.8 71 151-224 279-358 (476)
200 1qf9_A UMP/CMP kinase, protein 97.1 0.0034 1.1E-07 56.0 11.1 34 69-107 5-38 (194)
201 1r8s_A ADP-ribosylation factor 97.1 0.00067 2.3E-08 58.7 6.2 66 151-223 42-115 (164)
202 3tw8_B RAS-related protein RAB 97.1 0.00013 4.4E-09 64.3 1.5 22 70-91 9-30 (181)
203 2y8e_A RAB-protein 6, GH09086P 97.1 0.00039 1.3E-08 61.0 4.6 21 71-91 15-35 (179)
204 1m8p_A Sulfate adenylyltransfe 97.1 0.00058 2E-08 73.0 6.6 43 68-110 394-437 (573)
205 1r2q_A RAS-related protein RAB 97.1 0.00062 2.1E-08 59.0 5.7 21 71-91 7-27 (170)
206 2fh5_B SR-beta, signal recogni 97.1 0.0005 1.7E-08 62.8 5.3 22 70-91 7-28 (214)
207 2gj8_A MNME, tRNA modification 97.1 0.001 3.6E-08 58.9 7.2 22 70-91 4-25 (172)
208 2hjg_A GTP-binding protein ENG 97.1 0.0006 2E-08 70.3 6.3 23 69-91 174-196 (436)
209 1uj2_A Uridine-cytidine kinase 97.0 0.00038 1.3E-08 66.1 4.4 42 68-109 20-66 (252)
210 1ek0_A Protein (GTP-binding pr 97.0 0.00053 1.8E-08 59.5 4.9 20 72-91 5-24 (170)
211 3cph_A RAS-related protein SEC 97.0 0.00048 1.7E-08 62.6 4.8 22 70-91 20-41 (213)
212 3c8u_A Fructokinase; YP_612366 97.0 0.001 3.5E-08 61.1 7.1 42 69-110 21-62 (208)
213 3cmw_A Protein RECA, recombina 97.0 0.001 3.4E-08 78.8 8.5 91 69-165 1430-1522(1706)
214 3l0i_B RAS-related protein RAB 97.0 8.2E-05 2.8E-09 67.5 -0.4 22 70-91 33-54 (199)
215 3con_A GTPase NRAS; structural 97.0 0.00044 1.5E-08 61.8 4.4 21 71-91 22-42 (190)
216 1r5b_A Eukaryotic peptide chai 97.0 0.00034 1.2E-08 72.9 4.0 65 151-222 119-194 (467)
217 3e1s_A Exodeoxyribonuclease V, 97.0 0.0025 8.6E-08 68.1 10.7 36 70-105 204-239 (574)
218 2bme_A RAB4A, RAS-related prot 97.0 0.00069 2.4E-08 60.1 5.4 21 71-91 11-31 (186)
219 4b3f_X DNA-binding protein smu 97.0 0.0011 3.9E-08 71.7 8.1 34 72-105 207-240 (646)
220 3qq5_A Small GTP-binding prote 97.0 0.00029 9.9E-09 72.5 3.2 84 154-240 84-173 (423)
221 1fnn_A CDC6P, cell division co 97.0 0.0077 2.6E-07 59.9 13.7 101 72-177 46-148 (389)
222 3bc1_A RAS-related protein RAB 97.0 0.00029 1E-08 62.6 2.9 22 70-91 11-32 (195)
223 2bov_A RAla, RAS-related prote 97.0 0.00087 3E-08 60.4 6.1 22 70-91 14-35 (206)
224 1zj6_A ADP-ribosylation factor 97.0 0.0021 7.2E-08 57.2 8.5 23 69-91 15-37 (187)
225 1zo1_I IF2, translation initia 97.0 0.0006 2.1E-08 71.6 5.6 24 69-92 3-26 (501)
226 2j9r_A Thymidine kinase; TK1, 97.0 0.0012 4E-08 61.6 6.9 39 68-106 26-64 (214)
227 1zd9_A ADP-ribosylation factor 97.0 0.00046 1.6E-08 61.9 4.1 22 70-91 22-43 (188)
228 1x3s_A RAS-related protein RAB 97.0 0.00035 1.2E-08 62.4 3.3 22 70-91 15-36 (195)
229 1nij_A Hypothetical protein YJ 97.0 0.0018 6.1E-08 63.9 8.7 37 70-108 4-40 (318)
230 2gf0_A GTP-binding protein DI- 97.0 0.0012 4E-08 59.2 6.7 23 69-91 7-29 (199)
231 2fg5_A RAB-22B, RAS-related pr 97.0 0.00071 2.4E-08 60.8 5.2 22 70-91 23-44 (192)
232 1kao_A RAP2A; GTP-binding prot 97.0 0.0015 5.2E-08 56.2 7.2 21 71-91 4-24 (167)
233 1fzq_A ADP-ribosylation factor 97.0 0.0014 4.8E-08 58.4 7.0 23 69-91 15-37 (181)
234 2b6h_A ADP-ribosylation factor 97.0 0.0015 5.2E-08 58.8 7.3 23 69-91 28-50 (192)
235 2qtf_A Protein HFLX, GTP-bindi 96.9 0.0054 1.9E-07 61.7 12.0 22 70-91 179-200 (364)
236 3avx_A Elongation factor TS, e 96.9 0.0022 7.4E-08 73.2 9.8 127 70-223 296-426 (1289)
237 2a5j_A RAS-related protein RAB 96.9 0.00071 2.4E-08 60.7 4.9 21 71-91 22-42 (191)
238 1wb1_A Translation elongation 96.9 0.0008 2.7E-08 70.4 5.9 63 151-222 71-138 (482)
239 1c1y_A RAS-related protein RAP 96.9 0.0011 3.9E-08 57.2 6.0 21 71-91 4-24 (167)
240 2qby_B CDC6 homolog 3, cell di 96.9 0.0034 1.2E-07 62.5 10.3 40 69-108 44-91 (384)
241 3q85_A GTP-binding protein REM 96.9 0.0015 5E-08 56.8 6.7 20 72-91 4-23 (169)
242 1vg8_A RAS-related protein RAB 96.9 0.0003 1E-08 63.7 2.3 22 70-91 8-29 (207)
243 1zbd_A Rabphilin-3A; G protein 96.9 0.00063 2.1E-08 61.5 4.4 21 71-91 9-29 (203)
244 3zvl_A Bifunctional polynucleo 96.9 0.003 1E-07 64.7 10.0 37 68-109 256-292 (416)
245 2h17_A ADP-ribosylation factor 96.9 0.00074 2.5E-08 60.0 4.7 23 69-91 20-42 (181)
246 2o52_A RAS-related protein RAB 96.9 0.00078 2.7E-08 61.1 4.9 22 70-91 25-46 (200)
247 2oil_A CATX-8, RAS-related pro 96.9 0.00061 2.1E-08 61.0 4.1 21 71-91 26-46 (193)
248 1c9k_A COBU, adenosylcobinamid 96.9 0.00062 2.1E-08 61.8 4.0 32 72-107 1-32 (180)
249 1g7s_A Translation initiation 96.9 0.00096 3.3E-08 71.5 6.2 24 69-92 4-27 (594)
250 1ksh_A ARF-like protein 2; sma 96.9 0.0018 6.3E-08 57.4 7.1 23 69-91 17-39 (186)
251 2hup_A RAS-related protein RAB 96.9 0.0014 4.7E-08 59.6 6.4 21 71-91 30-50 (201)
252 3tqc_A Pantothenate kinase; bi 96.9 0.00033 1.1E-08 69.4 2.3 43 68-110 90-134 (321)
253 1nn5_A Similar to deoxythymidy 96.9 0.00086 3E-08 61.2 4.9 36 69-104 8-43 (215)
254 2bcg_Y Protein YP2, GTP-bindin 96.9 0.00036 1.2E-08 63.4 2.2 21 71-91 9-29 (206)
255 1l8q_A Chromosomal replication 96.8 0.0022 7.5E-08 62.9 8.1 39 70-108 37-75 (324)
256 2h57_A ADP-ribosylation factor 96.8 0.00097 3.3E-08 59.6 5.1 23 69-91 20-42 (190)
257 3geh_A MNME, tRNA modification 96.8 0.0005 1.7E-08 71.6 3.5 23 70-92 224-246 (462)
258 4dsu_A GTPase KRAS, isoform 2B 96.8 0.00089 3E-08 59.3 4.7 21 71-91 5-25 (189)
259 4dcu_A GTP-binding protein ENG 96.8 0.0017 5.9E-08 67.2 7.6 23 69-91 194-216 (456)
260 2ew1_A RAS-related protein RAB 96.8 0.0015 5.1E-08 59.6 6.3 21 71-91 27-47 (201)
261 1wms_A RAB-9, RAB9, RAS-relate 96.8 0.0016 5.5E-08 57.0 6.2 21 71-91 8-28 (177)
262 2fn4_A P23, RAS-related protei 96.8 0.0014 4.6E-08 57.6 5.7 22 70-91 9-30 (181)
263 3umf_A Adenylate kinase; rossm 96.8 0.006 2E-07 56.9 10.4 40 68-111 27-66 (217)
264 4fcw_A Chaperone protein CLPB; 96.8 0.0044 1.5E-07 59.9 9.9 43 69-111 46-88 (311)
265 1z08_A RAS-related protein RAB 96.8 0.0008 2.7E-08 58.5 4.1 21 71-91 7-27 (170)
266 2qby_A CDC6 homolog 1, cell di 96.8 0.0046 1.6E-07 61.2 10.2 40 69-108 44-86 (386)
267 2g6b_A RAS-related protein RAB 96.8 0.00058 2E-08 60.1 3.2 22 70-91 10-31 (180)
268 3dz8_A RAS-related protein RAB 96.8 0.0011 3.7E-08 59.5 5.1 22 70-91 23-44 (191)
269 1ly1_A Polynucleotide kinase; 96.8 0.0006 2.1E-08 60.3 3.3 37 70-110 2-38 (181)
270 4eaq_A DTMP kinase, thymidylat 96.8 0.015 5E-07 54.5 13.0 36 68-104 24-59 (229)
271 4eun_A Thermoresistant glucoki 96.8 0.0089 3.1E-07 54.3 11.2 37 69-110 28-64 (200)
272 2w58_A DNAI, primosome compone 96.8 0.00087 3E-08 60.9 4.3 38 70-107 54-91 (202)
273 2gf9_A RAS-related protein RAB 96.8 0.00057 2E-08 61.1 3.0 21 71-91 23-43 (189)
274 1f6b_A SAR1; gtpases, N-termin 96.8 0.00072 2.5E-08 61.4 3.7 22 70-91 25-46 (198)
275 1kk1_A EIF2gamma; initiation o 96.8 0.0012 4E-08 67.5 5.6 22 70-91 10-31 (410)
276 1odf_A YGR205W, hypothetical 3 96.8 0.00087 3E-08 65.4 4.4 43 68-110 29-74 (290)
277 3kkq_A RAS-related protein M-R 96.8 0.0019 6.3E-08 57.1 6.2 22 70-91 18-39 (183)
278 1z06_A RAS-related protein RAB 96.8 0.00071 2.4E-08 60.5 3.5 22 70-91 20-41 (189)
279 1m2o_B GTP-binding protein SAR 96.7 0.00074 2.5E-08 60.8 3.5 22 70-91 23-44 (190)
280 2fv8_A H6, RHO-related GTP-bin 96.7 0.00098 3.4E-08 60.7 4.3 22 70-91 25-46 (207)
281 1x6v_B Bifunctional 3'-phospho 96.7 0.00094 3.2E-08 71.9 4.7 59 47-111 35-93 (630)
282 3t5d_A Septin-7; GTP-binding p 96.7 0.0023 7.8E-08 61.4 7.1 21 71-91 9-29 (274)
283 2yc2_C IFT27, small RAB-relate 96.7 0.0017 5.9E-08 58.4 5.9 21 71-91 21-41 (208)
284 1moz_A ARL1, ADP-ribosylation 96.7 0.0013 4.4E-08 58.1 4.8 23 69-91 17-39 (183)
285 1qhx_A CPT, protein (chloramph 96.7 0.00086 2.9E-08 59.5 3.6 37 70-109 3-39 (178)
286 2nzj_A GTP-binding protein REM 96.7 0.0026 9E-08 55.4 6.6 22 70-91 4-25 (175)
287 2rhm_A Putative kinase; P-loop 96.7 0.00097 3.3E-08 59.8 3.8 37 69-110 4-40 (193)
288 2plr_A DTMP kinase, probable t 96.7 0.0013 4.3E-08 59.9 4.6 34 69-103 3-36 (213)
289 2z0h_A DTMP kinase, thymidylat 96.7 0.0014 4.6E-08 59.0 4.7 34 72-105 2-35 (197)
290 2f6r_A COA synthase, bifunctio 96.7 0.0037 1.3E-07 60.4 8.1 36 68-109 73-108 (281)
291 2v1u_A Cell division control p 96.7 0.012 3.9E-07 58.3 11.9 41 69-109 43-89 (387)
292 2wwf_A Thymidilate kinase, put 96.7 0.0014 4.9E-08 59.7 4.8 35 69-103 9-43 (212)
293 4a9a_A Ribosome-interacting GT 96.7 0.0017 5.8E-08 65.7 5.7 117 67-221 69-194 (376)
294 2fu5_C RAS-related protein RAB 96.7 0.0017 5.8E-08 57.4 5.1 21 71-91 9-29 (183)
295 3llu_A RAS-related GTP-binding 96.7 0.0033 1.1E-07 56.6 7.2 21 70-90 20-40 (196)
296 2pbr_A DTMP kinase, thymidylat 96.7 0.0014 4.8E-08 58.6 4.6 33 72-104 2-34 (195)
297 2f7s_A C25KG, RAS-related prot 96.6 0.00087 3E-08 61.3 3.2 21 71-91 26-46 (217)
298 1s1m_A CTP synthase; CTP synth 96.6 0.011 3.8E-07 62.3 12.0 40 71-110 4-45 (545)
299 2gco_A H9, RHO-related GTP-bin 96.6 0.0011 3.7E-08 60.1 3.7 21 71-91 26-46 (201)
300 3te6_A Regulatory protein SIR3 96.6 0.04 1.4E-06 54.3 15.2 55 45-108 29-90 (318)
301 3q72_A GTP-binding protein RAD 96.6 0.0018 6.1E-08 56.1 5.0 20 72-91 4-23 (166)
302 2orv_A Thymidine kinase; TP4A 96.6 0.0045 1.5E-07 58.3 7.9 39 68-106 17-55 (234)
303 3t15_A Ribulose bisphosphate c 96.6 0.0018 6.1E-08 63.0 5.4 36 68-106 34-69 (293)
304 3gj0_A GTP-binding nuclear pro 96.6 0.0015 5E-08 60.1 4.5 65 151-222 62-132 (221)
305 4gzl_A RAS-related C3 botulinu 96.6 0.00065 2.2E-08 61.9 2.0 23 69-91 29-51 (204)
306 1vco_A CTP synthetase; tetrame 96.6 0.0097 3.3E-07 62.9 11.2 40 70-109 12-53 (550)
307 1gtv_A TMK, thymidylate kinase 96.6 0.00069 2.3E-08 61.9 2.2 36 72-107 2-37 (214)
308 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.028 9.6E-07 52.6 13.5 73 69-164 38-110 (262)
309 2cxx_A Probable GTP-binding pr 96.6 0.0057 1.9E-07 54.1 8.0 20 72-91 3-22 (190)
310 3h4m_A Proteasome-activating n 96.6 0.0051 1.7E-07 58.8 8.1 72 69-163 50-121 (285)
311 3vaa_A Shikimate kinase, SK; s 96.5 0.0013 4.3E-08 60.0 3.5 40 64-108 19-58 (199)
312 2j1l_A RHO-related GTP-binding 96.5 0.0015 5.2E-08 59.9 4.1 22 70-91 34-55 (214)
313 4tmk_A Protein (thymidylate ki 96.5 0.018 6E-07 53.5 11.3 33 70-102 3-36 (213)
314 4djt_A GTP-binding nuclear pro 96.5 0.0008 2.8E-08 61.6 2.1 22 70-91 11-32 (218)
315 3bwd_D RAC-like GTP-binding pr 96.5 0.0012 4.2E-08 58.1 3.3 22 70-91 8-29 (182)
316 3oes_A GTPase rhebl1; small GT 96.5 0.00038 1.3E-08 63.1 -0.1 22 70-91 24-45 (201)
317 3t5g_A GTP-binding protein RHE 96.5 0.0012 4.1E-08 58.3 3.1 22 70-91 6-27 (181)
318 3cpj_B GTP-binding protein YPT 96.5 0.0012 4.3E-08 60.8 3.3 21 71-91 14-34 (223)
319 3asz_A Uridine kinase; cytidin 96.5 0.0022 7.7E-08 58.5 5.0 38 69-109 5-42 (211)
320 3kb2_A SPBC2 prophage-derived 96.5 0.0012 4.1E-08 57.9 3.1 35 71-110 2-36 (173)
321 2gks_A Bifunctional SAT/APS ki 96.5 0.0028 9.6E-08 67.3 6.3 41 69-109 371-411 (546)
322 3reg_A RHO-like small GTPase; 96.5 0.00093 3.2E-08 60.0 2.1 22 70-91 23-44 (194)
323 3izy_P Translation initiation 96.5 0.00061 2.1E-08 72.1 1.0 24 69-92 3-26 (537)
324 1y63_A LMAJ004144AAA protein; 96.5 0.0016 5.4E-08 58.6 3.7 36 68-107 8-43 (184)
325 3trf_A Shikimate kinase, SK; a 96.5 0.0015 5E-08 58.4 3.4 35 70-109 5-39 (185)
326 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.001 3.4E-08 58.8 2.2 21 71-91 6-26 (186)
327 1s0u_A EIF-2-gamma, translatio 96.5 0.0063 2.1E-07 62.0 8.5 24 68-91 6-29 (408)
328 2atv_A RERG, RAS-like estrogen 96.5 0.0035 1.2E-07 56.3 5.9 23 69-91 27-49 (196)
329 1m7b_A RND3/RHOE small GTP-bin 96.4 0.0015 5.2E-08 58.1 3.4 22 70-91 7-28 (184)
330 3th5_A RAS-related C3 botulinu 95.4 0.0005 1.7E-08 62.4 0.0 23 69-91 29-51 (204)
331 3jvv_A Twitching mobility prot 96.4 0.0096 3.3E-07 59.7 9.4 83 70-162 123-206 (356)
332 1g8f_A Sulfate adenylyltransfe 96.4 0.0031 1.1E-07 66.3 5.9 40 69-108 394-435 (511)
333 3syl_A Protein CBBX; photosynt 96.4 0.022 7.4E-07 55.0 11.5 31 69-99 66-96 (309)
334 2chg_A Replication factor C sm 96.4 0.022 7.4E-07 51.2 10.7 35 72-106 40-74 (226)
335 2q3h_A RAS homolog gene family 96.4 0.0027 9.2E-08 57.1 4.6 23 69-91 19-41 (201)
336 2v54_A DTMP kinase, thymidylat 96.4 0.0016 5.5E-08 58.9 3.0 35 69-105 3-37 (204)
337 2x77_A ADP-ribosylation factor 96.3 0.00051 1.7E-08 61.4 -0.4 22 69-90 21-42 (189)
338 1gwn_A RHO-related GTP-binding 96.3 0.0019 6.3E-08 59.1 3.4 22 70-91 28-49 (205)
339 3o47_A ADP-ribosylation factor 96.3 0.0027 9.2E-08 62.9 4.8 20 71-90 166-185 (329)
340 1lnz_A SPO0B-associated GTP-bi 96.3 0.00069 2.4E-08 67.7 0.4 20 72-91 160-179 (342)
341 3cbq_A GTP-binding protein REM 96.3 0.0087 3E-07 54.0 7.8 21 70-90 23-43 (195)
342 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0083 2.8E-07 59.1 8.1 74 69-164 44-117 (322)
343 4edh_A DTMP kinase, thymidylat 96.3 0.0033 1.1E-07 58.4 4.9 36 69-104 5-40 (213)
344 2eyu_A Twitching motility prot 96.3 0.029 1E-06 53.6 11.6 37 69-105 24-61 (261)
345 1ukz_A Uridylate kinase; trans 96.3 0.0021 7.2E-08 58.3 3.4 36 67-107 12-47 (203)
346 1w5s_A Origin recognition comp 96.3 0.059 2E-06 53.8 14.5 40 69-108 49-96 (412)
347 2f1r_A Molybdopterin-guanine d 96.3 0.0022 7.4E-08 57.6 3.4 38 71-108 3-40 (171)
348 2bwj_A Adenylate kinase 5; pho 96.3 0.0021 7.3E-08 57.8 3.3 35 69-108 11-45 (199)
349 3pzx_A Formate--tetrahydrofola 96.3 0.0042 1.4E-07 64.1 5.8 44 69-115 56-103 (557)
350 2c5m_A CTP synthase; cytidine 96.3 0.019 6.5E-07 54.3 9.6 42 69-110 22-65 (294)
351 1tev_A UMP-CMP kinase; ploop, 96.2 0.0023 8E-08 57.1 3.4 34 69-107 2-35 (196)
352 2z4s_A Chromosomal replication 96.2 0.01 3.5E-07 61.1 8.7 39 70-108 130-170 (440)
353 3ld9_A DTMP kinase, thymidylat 96.2 0.0055 1.9E-07 57.4 6.0 42 68-109 19-61 (223)
354 1sq5_A Pantothenate kinase; P- 96.2 0.0036 1.2E-07 61.3 5.0 43 68-110 78-122 (308)
355 1jbk_A CLPB protein; beta barr 96.2 0.0037 1.3E-07 55.0 4.6 38 69-106 42-86 (195)
356 3d8b_A Fidgetin-like protein 1 96.2 0.022 7.4E-07 56.8 10.8 36 68-106 115-150 (357)
357 3dpu_A RAB family protein; roc 96.2 0.0048 1.6E-07 65.1 6.1 84 151-241 96-186 (535)
358 2iyv_A Shikimate kinase, SK; t 96.2 0.0018 6.1E-08 57.8 2.4 33 71-108 3-35 (184)
359 2qt1_A Nicotinamide riboside k 96.2 0.0038 1.3E-07 56.9 4.7 38 68-109 19-56 (207)
360 4gp7_A Metallophosphoesterase; 96.2 0.0041 1.4E-07 55.3 4.7 23 68-90 7-29 (171)
361 2ewv_A Twitching motility prot 96.2 0.023 7.8E-07 57.2 10.7 37 69-105 135-172 (372)
362 3szr_A Interferon-induced GTP- 96.2 0.0086 2.9E-07 64.3 7.9 74 152-225 146-230 (608)
363 3eie_A Vacuolar protein sortin 96.2 0.013 4.4E-07 57.5 8.6 73 69-164 50-122 (322)
364 2j0v_A RAC-like GTP-binding pr 96.2 0.002 6.7E-08 58.7 2.5 21 71-91 10-30 (212)
365 1xzp_A Probable tRNA modificat 96.2 0.0051 1.8E-07 64.2 5.9 23 70-92 243-265 (482)
366 3b9p_A CG5977-PA, isoform A; A 96.1 0.011 3.8E-07 56.8 8.0 73 69-164 53-125 (297)
367 3upu_A ATP-dependent DNA helic 96.1 0.023 7.9E-07 58.7 10.7 34 72-105 47-81 (459)
368 3tlx_A Adenylate kinase 2; str 96.1 0.0062 2.1E-07 57.4 5.9 34 69-107 28-61 (243)
369 2atx_A Small GTP binding prote 96.1 0.0018 6.1E-08 58.0 2.0 21 71-91 19-39 (194)
370 2vli_A Antibiotic resistance p 96.1 0.0019 6.5E-08 57.4 2.1 26 69-94 4-29 (183)
371 2qgz_A Helicase loader, putati 96.1 0.004 1.4E-07 61.1 4.6 38 70-107 152-190 (308)
372 1uf9_A TT1252 protein; P-loop, 96.1 0.0026 9E-08 57.4 3.1 36 68-109 6-41 (203)
373 1kag_A SKI, shikimate kinase I 96.1 0.0023 7.9E-08 56.4 2.6 34 70-108 4-37 (173)
374 2c95_A Adenylate kinase 1; tra 96.1 0.0029 9.8E-08 56.8 3.2 34 69-107 8-41 (196)
375 3sr0_A Adenylate kinase; phosp 96.1 0.0063 2.1E-07 56.2 5.6 86 72-165 2-87 (206)
376 2jeo_A Uridine-cytidine kinase 96.1 0.0049 1.7E-07 58.0 4.9 45 64-108 19-68 (245)
377 3r7w_A Gtpase1, GTP-binding pr 96.1 0.0071 2.4E-07 59.1 6.2 21 71-91 4-24 (307)
378 3lvq_E ARF-GAP with SH3 domain 96.1 0.0063 2.2E-07 63.4 6.1 66 151-223 364-437 (497)
379 2p65_A Hypothetical protein PF 96.1 0.0045 1.6E-07 54.4 4.3 37 70-106 43-86 (187)
380 3lw7_A Adenylate kinase relate 96.1 0.0028 9.7E-08 55.2 2.9 28 71-102 2-29 (179)
381 1mky_A Probable GTP-binding pr 96.0 0.0056 1.9E-07 63.0 5.3 23 69-91 179-201 (439)
382 2cdn_A Adenylate kinase; phosp 96.0 0.0037 1.3E-07 56.7 3.5 35 68-107 18-52 (201)
383 3iij_A Coilin-interacting nucl 96.0 0.0034 1.2E-07 55.8 3.3 34 69-107 10-43 (180)
384 1zp6_A Hypothetical protein AT 96.0 0.0035 1.2E-07 56.2 3.3 36 69-107 8-43 (191)
385 3ec1_A YQEH GTPase; atnos1, at 96.0 0.021 7.3E-07 57.3 9.5 25 71-95 163-187 (369)
386 3h2y_A GTPase family protein; 96.0 0.014 4.9E-07 58.6 8.1 24 71-94 161-184 (368)
387 3q3j_B RHO-related GTP-binding 96.0 0.0028 9.6E-08 58.2 2.7 22 70-91 27-48 (214)
388 1e6c_A Shikimate kinase; phosp 96.0 0.0033 1.1E-07 55.3 2.9 33 71-108 3-35 (173)
389 2vo1_A CTP synthase 1; pyrimid 96.0 0.057 2E-06 51.4 11.5 42 69-110 22-65 (295)
390 1sxj_E Activator 1 40 kDa subu 96.0 0.023 7.8E-07 55.9 9.4 26 69-95 36-61 (354)
391 3d3q_A TRNA delta(2)-isopenten 95.9 0.0044 1.5E-07 61.7 4.0 35 70-109 7-41 (340)
392 2npi_A Protein CLP1; CLP1-PCF1 95.9 0.0043 1.5E-07 64.4 3.9 41 69-109 137-178 (460)
393 2iwr_A Centaurin gamma 1; ANK 95.9 0.013 4.3E-07 51.4 6.5 21 71-91 8-28 (178)
394 1aky_A Adenylate kinase; ATP:A 95.9 0.0042 1.4E-07 57.3 3.3 34 69-107 3-36 (220)
395 3cm0_A Adenylate kinase; ATP-b 95.9 0.0039 1.3E-07 55.5 3.1 34 69-107 3-36 (186)
396 1njg_A DNA polymerase III subu 95.9 0.03 1E-06 50.8 9.2 29 69-97 44-72 (250)
397 2ze6_A Isopentenyl transferase 95.9 0.0045 1.6E-07 58.8 3.6 34 71-109 2-35 (253)
398 1zuh_A Shikimate kinase; alpha 95.9 0.0041 1.4E-07 54.6 3.1 35 69-108 6-40 (168)
399 3v9p_A DTMP kinase, thymidylat 95.9 0.006 2.1E-07 57.3 4.4 36 69-104 24-63 (227)
400 3aez_A Pantothenate kinase; tr 95.8 0.0083 2.8E-07 59.0 5.4 42 68-109 88-131 (312)
401 1via_A Shikimate kinase; struc 95.8 0.0039 1.3E-07 55.3 2.8 33 71-108 5-37 (175)
402 3nva_A CTP synthase; rossman f 95.8 0.07 2.4E-06 55.7 12.6 41 70-110 3-45 (535)
403 2pt5_A Shikimate kinase, SK; a 95.8 0.0044 1.5E-07 54.2 3.1 32 72-108 2-33 (168)
404 3n70_A Transport activator; si 95.8 0.018 6.2E-07 49.5 6.9 36 71-107 25-60 (145)
405 1d2n_A N-ethylmaleimide-sensit 95.8 0.014 4.6E-07 55.6 6.6 34 69-105 63-96 (272)
406 1lv7_A FTSH; alpha/beta domain 95.8 0.03 1E-06 52.7 8.8 35 69-106 44-78 (257)
407 3bs4_A Uncharacterized protein 95.7 0.015 5.2E-07 55.7 6.7 52 50-108 8-59 (260)
408 3c5c_A RAS-like protein 12; GD 95.7 0.0088 3E-07 53.4 4.7 22 70-91 21-42 (187)
409 3ihw_A Centg3; RAS, centaurin, 95.7 0.0073 2.5E-07 53.9 4.2 22 70-91 20-41 (184)
410 2qp9_X Vacuolar protein sortin 95.7 0.02 6.8E-07 57.1 7.8 73 69-164 83-155 (355)
411 1ltq_A Polynucleotide kinase; 95.7 0.0043 1.5E-07 60.0 2.7 37 70-110 2-38 (301)
412 3exa_A TRNA delta(2)-isopenten 95.7 0.016 5.3E-07 57.1 6.6 34 70-108 3-36 (322)
413 1zak_A Adenylate kinase; ATP:A 95.7 0.0046 1.6E-07 57.1 2.7 34 69-107 4-37 (222)
414 1jjv_A Dephospho-COA kinase; P 95.6 0.0063 2.1E-07 55.3 3.3 33 70-108 2-34 (206)
415 1w4r_A Thymidine kinase; type 95.6 0.024 8.1E-07 51.9 7.1 38 69-106 19-56 (195)
416 2qor_A Guanylate kinase; phosp 95.6 0.004 1.4E-07 56.8 2.0 26 69-94 11-36 (204)
417 2grj_A Dephospho-COA kinase; T 95.6 0.0077 2.6E-07 55.0 3.8 36 69-109 11-46 (192)
418 4b4t_K 26S protease regulatory 95.6 0.023 8E-07 58.3 7.8 70 68-160 204-273 (428)
419 1ak2_A Adenylate kinase isoenz 95.6 0.0076 2.6E-07 56.2 3.8 34 69-107 15-48 (233)
420 3be4_A Adenylate kinase; malar 95.5 0.0067 2.3E-07 55.9 3.4 34 69-107 4-37 (217)
421 3e2i_A Thymidine kinase; Zn-bi 95.5 0.016 5.3E-07 54.0 5.8 39 68-106 26-64 (219)
422 1sxj_B Activator 1 37 kDa subu 95.5 0.042 1.4E-06 52.9 9.2 27 70-97 43-69 (323)
423 2r2a_A Uncharacterized protein 95.5 0.0074 2.5E-07 55.4 3.6 39 69-107 4-48 (199)
424 4b4t_M 26S protease regulatory 95.5 0.023 7.9E-07 58.4 7.5 70 68-160 213-282 (434)
425 1zd8_A GTP:AMP phosphotransfer 95.5 0.0053 1.8E-07 56.9 2.4 34 69-107 6-39 (227)
426 1vht_A Dephospho-COA kinase; s 95.5 0.0093 3.2E-07 54.7 4.0 34 69-108 3-36 (218)
427 1a5t_A Delta prime, HOLB; zinc 95.5 0.098 3.4E-06 51.4 11.8 28 69-96 23-50 (334)
428 4b4t_L 26S protease subunit RP 95.5 0.027 9.3E-07 57.9 7.8 70 68-160 213-282 (437)
429 3tau_A Guanylate kinase, GMP k 95.4 0.0055 1.9E-07 56.2 2.3 26 69-94 7-32 (208)
430 3hjn_A DTMP kinase, thymidylat 95.4 0.012 4E-07 53.9 4.5 34 72-105 2-35 (197)
431 2if2_A Dephospho-COA kinase; a 95.4 0.0067 2.3E-07 55.0 2.9 32 71-108 2-33 (204)
432 3crm_A TRNA delta(2)-isopenten 95.4 0.0085 2.9E-07 59.2 3.7 36 69-109 4-39 (323)
433 3pxi_A Negative regulator of g 95.4 0.021 7.3E-07 62.7 7.1 39 71-109 522-560 (758)
434 2bbw_A Adenylate kinase 4, AK4 95.3 0.0085 2.9E-07 56.3 3.3 26 69-94 26-51 (246)
435 3ake_A Cytidylate kinase; CMP 95.3 0.0082 2.8E-07 54.3 3.1 32 72-108 4-35 (208)
436 4i1u_A Dephospho-COA kinase; s 95.3 0.06 2.1E-06 49.8 9.0 34 69-108 8-41 (210)
437 1bif_A 6-phosphofructo-2-kinas 95.3 0.01 3.5E-07 61.6 4.1 41 68-108 37-77 (469)
438 2qag_A Septin-2, protein NEDD5 95.3 0.016 5.6E-07 58.0 5.5 20 72-91 39-58 (361)
439 3llm_A ATP-dependent RNA helic 95.3 0.1 3.4E-06 48.5 10.6 124 70-196 76-220 (235)
440 2jaq_A Deoxyguanosine kinase; 95.3 0.0087 3E-07 53.8 3.1 24 72-95 2-25 (205)
441 1kgd_A CASK, peripheral plasma 95.3 0.0079 2.7E-07 53.8 2.7 26 69-94 4-29 (180)
442 1tf7_A KAIC; homohexamer, hexa 95.3 0.044 1.5E-06 57.6 8.9 40 69-108 38-78 (525)
443 3foz_A TRNA delta(2)-isopenten 95.2 0.016 5.3E-07 57.0 4.9 35 69-108 9-43 (316)
444 3a00_A Guanylate kinase, GMP k 95.2 0.0073 2.5E-07 54.2 2.4 26 70-95 1-26 (186)
445 3a8t_A Adenylate isopentenyltr 95.2 0.014 5E-07 57.9 4.6 36 69-109 39-74 (339)
446 1sxj_C Activator 1 40 kDa subu 95.2 0.039 1.3E-06 54.3 7.7 32 73-104 49-80 (340)
447 2j41_A Guanylate kinase; GMP, 95.1 0.0073 2.5E-07 54.5 2.2 26 69-94 5-30 (207)
448 3nh6_A ATP-binding cassette SU 95.1 0.053 1.8E-06 53.1 8.3 33 63-95 73-105 (306)
449 1cke_A CK, MSSA, protein (cyti 95.1 0.011 3.7E-07 54.4 3.1 33 70-107 5-37 (227)
450 3vfd_A Spastin; ATPase, microt 95.1 0.039 1.3E-06 55.5 7.5 73 69-164 147-219 (389)
451 2r62_A Cell division protease 95.0 0.0097 3.3E-07 56.3 2.8 25 70-94 44-68 (268)
452 3u61_B DNA polymerase accessor 95.0 0.077 2.6E-06 51.5 9.3 36 69-107 47-82 (324)
453 3fb4_A Adenylate kinase; psych 95.0 0.012 4E-07 53.9 3.1 31 72-107 2-32 (216)
454 3hws_A ATP-dependent CLP prote 95.0 0.016 5.4E-07 57.8 4.3 35 69-106 50-84 (363)
455 2zan_A Vacuolar protein sortin 95.0 0.022 7.4E-07 58.7 5.4 36 69-106 166-201 (444)
456 2ce7_A Cell division protein F 95.0 0.056 1.9E-06 56.2 8.5 73 69-164 48-120 (476)
457 3tr0_A Guanylate kinase, GMP k 94.9 0.012 4E-07 53.2 2.9 26 69-94 6-31 (205)
458 3eph_A TRNA isopentenyltransfe 94.8 0.061 2.1E-06 54.7 8.1 34 70-108 2-35 (409)
459 1z6t_A APAF-1, apoptotic prote 94.8 0.038 1.3E-06 58.5 7.0 41 69-109 146-190 (591)
460 4b4t_J 26S protease regulatory 94.8 0.03 1E-06 57.0 5.8 69 69-160 181-249 (405)
461 1e4v_A Adenylate kinase; trans 94.8 0.014 4.9E-07 53.4 3.2 30 72-106 2-31 (214)
462 3pxg_A Negative regulator of g 94.8 0.028 9.7E-07 58.2 5.8 27 70-96 201-227 (468)
463 1ofh_A ATP-dependent HSL prote 94.8 0.022 7.5E-07 54.7 4.6 37 69-108 49-85 (310)
464 3cr8_A Sulfate adenylyltranfer 94.8 0.016 5.3E-07 61.6 3.8 41 69-109 368-409 (552)
465 4hlc_A DTMP kinase, thymidylat 94.7 0.023 8E-07 52.2 4.4 33 71-104 3-35 (205)
466 1jr3_A DNA polymerase III subu 94.7 0.067 2.3E-06 52.7 8.1 28 69-96 37-64 (373)
467 4b4t_I 26S protease regulatory 94.7 0.036 1.2E-06 56.8 6.1 70 68-160 214-283 (437)
468 2wkq_A NPH1-1, RAS-related C3 94.7 0.02 6.9E-07 55.5 4.1 23 69-91 154-176 (332)
469 3dl0_A Adenylate kinase; phosp 94.7 0.013 4.3E-07 53.7 2.4 31 72-107 2-32 (216)
470 3ney_A 55 kDa erythrocyte memb 94.6 0.015 5.2E-07 53.3 2.7 26 69-94 18-43 (197)
471 1lvg_A Guanylate kinase, GMP k 94.6 0.014 4.9E-07 53.1 2.5 27 69-95 3-29 (198)
472 4dkx_A RAS-related protein RAB 94.5 0.039 1.3E-06 51.1 5.4 20 72-91 15-34 (216)
473 2bjv_A PSP operon transcriptio 94.5 0.037 1.3E-06 52.3 5.4 41 71-111 30-70 (265)
474 2c9o_A RUVB-like 1; hexameric 94.5 0.042 1.4E-06 56.7 6.2 27 69-95 62-88 (456)
475 2xb4_A Adenylate kinase; ATP-b 94.5 0.018 6.2E-07 53.3 3.1 23 72-94 2-24 (223)
476 3r20_A Cytidylate kinase; stru 94.5 0.019 6.4E-07 54.1 3.2 34 69-107 8-41 (233)
477 3hu3_A Transitional endoplasmi 94.5 0.039 1.3E-06 57.6 5.8 35 69-106 237-271 (489)
478 4b4t_H 26S protease regulatory 94.5 0.045 1.6E-06 56.5 6.2 70 68-160 241-310 (467)
479 3cf0_A Transitional endoplasmi 94.5 0.021 7.2E-07 55.4 3.5 34 69-105 48-81 (301)
480 3cf2_A TER ATPase, transitiona 94.4 0.12 4.1E-06 57.1 9.9 36 68-106 236-271 (806)
481 2bdt_A BH3686; alpha-beta prot 94.4 0.019 6.4E-07 51.3 2.8 34 71-108 3-36 (189)
482 1tue_A Replication protein E1; 94.4 0.021 7.1E-07 52.8 3.1 26 70-95 58-83 (212)
483 1qvr_A CLPB protein; coiled co 94.4 0.065 2.2E-06 59.7 7.7 40 71-110 589-628 (854)
484 2qmh_A HPR kinase/phosphorylas 94.3 0.034 1.2E-06 51.2 4.3 33 69-107 33-65 (205)
485 2ocp_A DGK, deoxyguanosine kin 94.3 0.019 6.4E-07 53.7 2.7 27 69-95 1-27 (241)
486 3lnc_A Guanylate kinase, GMP k 94.2 0.016 5.5E-07 53.8 1.9 27 68-94 25-52 (231)
487 1q3t_A Cytidylate kinase; nucl 94.2 0.028 9.5E-07 52.4 3.6 36 68-108 14-49 (236)
488 2h92_A Cytidylate kinase; ross 94.2 0.019 6.5E-07 52.5 2.4 33 70-107 3-35 (219)
489 1iqp_A RFCS; clamp loader, ext 94.2 0.14 4.7E-06 49.3 8.7 27 72-98 48-74 (327)
490 1r6b_X CLPA protein; AAA+, N-t 94.1 0.11 3.7E-06 57.0 8.6 37 70-109 488-524 (758)
491 2dby_A GTP-binding protein; GD 94.0 0.11 3.7E-06 52.2 7.8 22 72-93 3-24 (368)
492 2gk6_A Regulator of nonsense t 94.0 0.051 1.7E-06 58.4 5.7 34 72-105 197-231 (624)
493 3vkw_A Replicase large subunit 94.0 0.15 5.1E-06 52.4 8.9 107 69-192 160-269 (446)
494 4e22_A Cytidylate kinase; P-lo 94.0 0.025 8.6E-07 53.5 2.9 26 69-94 26-51 (252)
495 1qvr_A CLPB protein; coiled co 93.9 0.075 2.6E-06 59.3 7.1 38 69-106 190-234 (854)
496 3qf4_A ABC transporter, ATP-bi 93.9 0.13 4.6E-06 54.7 8.7 28 68-95 367-394 (587)
497 1z6g_A Guanylate kinase; struc 93.9 0.021 7.1E-07 52.8 2.1 27 68-94 21-47 (218)
498 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.067 2.3E-06 52.9 5.8 81 70-163 171-251 (330)
499 4g1u_C Hemin import ATP-bindin 93.8 0.13 4.6E-06 49.1 7.6 33 63-95 30-62 (266)
500 3sfz_A APAF-1, apoptotic pepti 93.7 0.1 3.5E-06 59.6 7.9 39 69-107 146-188 (1249)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-86 Score=689.54 Aligned_cols=403 Identities=36% Similarity=0.631 Sum_probs=357.5
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++||+.+|++|||+++++.+|++++++++.++++..+++|.++++++++++|.++|++....+... .+|++|+++|++|
T Consensus 32 l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~L~~~~~~~~~~-~~p~vIlivG~~G 110 (443)
T 3dm5_A 32 VRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGIQG 110 (443)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTTSSCCCCCCC-SSSEEEEEECCTT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhcCcccccccC-CCCeEEEEECcCC
Confidence 478999999999999999999999999999999999999999999999999999999743333332 3689999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
|||||++.+||.+|+++|++|+++++|+|||++++|+..++...+++++......+|.+++.+++..+...+||+|||||
T Consensus 111 ~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDT 190 (443)
T 3dm5_A 111 SGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDT 190 (443)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999998888888999999999998877899999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCcee
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~ 240 (458)
||+++.+..++.++..+..+..|++++||+|+++++++.+.++.|++.+++.|||+||+|+++++|.++++.+.++.||.
T Consensus 191 aGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~ 270 (443)
T 3dm5_A 191 AGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIK 270 (443)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSSCSSHHHHHHHHHTTCCCEE
T ss_pred CCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCCcccccHHHHHHHHHCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHh--HHHHHHHHhhcccChhHHHHHHHHHHhhccchhh
Q 012680 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQED--AEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRV 318 (458)
Q Consensus 241 fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~--~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~ 318 (458)
|+|+|++++||++|+|++++++++|+||+.+++|++++.+++++ ++ +.+++.+|+||++||++|++++.||||+++|
T Consensus 271 fig~Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~-~~~k~~~~~f~l~d~~~q~~~~~kmg~~~~~ 349 (443)
T 3dm5_A 271 FIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEE-DIERFLRGKFTLKDMYAQLEAMRKMGPLKQI 349 (443)
T ss_dssp EEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHH-HHHHHHTTCCCHHHHHHHHHHHHTTCC----
T ss_pred EEEcCCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHHH-HHHHHhhCCcCHHHHHHHHHHHHhccCHHHH
Confidence 99999999999999999999999999999999999999998776 64 8899999999999999999999999999999
Q ss_pred hhccCCCCC-CChHHHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHHHH
Q 012680 319 IGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 397 (458)
Q Consensus 319 ~~~~pg~~~-~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~ 397 (458)
++|||||++ +++...+.+++++++|++||+|||++||+||++| ++||++|||+|||++++|||+||+||++|++|||
T Consensus 350 ~~m~pg~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~--~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~ 427 (443)
T 3dm5_A 350 LRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEII--NYSRIKRIARGSGTSTKDVKELLDQYRQMKKLFK 427 (443)
T ss_dssp ---------------CCCCHHHHHHHHHHHTTSCHHHHHCGGGC--CHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCchhhcchhhhhhhHHHHHHHHHHHHcCCHHHhcCchhc--ChHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999984 5443344568999999999999999999999999 5899999999999999999999999999987777
Q ss_pred HHhhhhcCCCCCCc
Q 012680 398 NLMGVMEGGSLPAL 411 (458)
Q Consensus 398 ~~~~~~~~~~~~~~ 411 (458)
+|. +|+|++|
T Consensus 428 ~~~----~~~~~~~ 437 (443)
T 3dm5_A 428 SMN----KRQLSRL 437 (443)
T ss_dssp TCC----SCCCC--
T ss_pred HHc----CCCHHHH
Confidence 764 3555543
No 2
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=1.8e-84 Score=672.82 Aligned_cols=397 Identities=35% Similarity=0.592 Sum_probs=354.9
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++||+.+|++|||++++|++|++++++++.+.++..+++|.++++++++++|.++|++..........+|++|+++|++|
T Consensus 28 l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~G 107 (433)
T 3kl4_A 28 IKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQG 107 (433)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCC
Confidence 47999999999999999999999999999999999999999999999999999999975333222234689999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
|||||++.+||.+|+++|++|+++++|+||+++++++..++...+++++......+|..++..++..+.+.+||+|||||
T Consensus 108 sGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDT 187 (433)
T 3kl4_A 108 SGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDT 187 (433)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999998877788999988999988778999999999
Q ss_pred Ccccc--ccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCc
Q 012680 161 AGRLQ--IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238 (458)
Q Consensus 161 pg~l~--~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~p 238 (458)
||+++ .+..++.++..+..++.|+++++|+|+++++++.+.+..|++.+++.|||+||+|+++++|.++++...++.|
T Consensus 188 aGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTKlD~~a~~G~als~~~~~g~P 267 (433)
T 3kl4_A 188 AGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGAT 267 (433)
T ss_dssp CCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEECGGGCSCHHHHHHHHHHHTCE
T ss_pred CCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEEEEecccccccchHHHHHHHHHCCC
Confidence 99998 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhc--ccChhHHHHHHHHHHhhccch
Q 012680 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA--NFDFNDFLKQTRTVARMGSMS 316 (458)
Q Consensus 239 I~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~--~~~~edl~~~l~~~~~~g~~~ 316 (458)
|.|+|+|++++|+++|+|++++++++|+||+.+++|++++.+++++++++++++.+| +||++||++|++++.||||++
T Consensus 268 i~fig~Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg~~~ 347 (433)
T 3kl4_A 268 IKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLS 347 (433)
T ss_dssp EEEEECCSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHCCSSS
T ss_pred EEEEECCCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCHH
Confidence 999999999999999999999999999999999999999999999889999999999 899999999999999999999
Q ss_pred hhhhccCCCCC-CC---hHHHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHH
Q 012680 317 RVIGMIPGMGK-IT---PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQM 392 (458)
Q Consensus 317 ~~~~~~pg~~~-~~---~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~ 392 (458)
+|++|||||++ ++ +.+.+.+++++++|++||+|||++||+||++| ++||++|||+|||++++|||+||+||++|
T Consensus 348 ~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~--~~sr~~ria~gsg~~~~~v~~ll~~~~~~ 425 (433)
T 3kl4_A 348 KVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNII--DKSRMRRIAEGSGLEVEEVRELLEWYNNM 425 (433)
T ss_dssp GGGGTTTCCCCCSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCGGGC--CHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCccccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCchhc--cHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 99999999984 44 23455678899999999999999999999999 58999999999999999999999999999
Q ss_pred HHHHHHH
Q 012680 393 RVRMKNL 399 (458)
Q Consensus 393 ~~~~~~~ 399 (458)
++|||+|
T Consensus 426 ~~~~~~~ 432 (433)
T 3kl4_A 426 NRLLKMV 432 (433)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 9888876
No 3
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=9.3e-79 Score=632.68 Aligned_cols=398 Identities=50% Similarity=0.802 Sum_probs=360.5
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++||+.+|++|||+++++++|++++++++.+.++..+++|.+++.++++++|.+++++...++.+...+|++|+++|++|
T Consensus 31 l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~G 110 (433)
T 2xxa_A 31 LREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQG 110 (433)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCC
Confidence 47899999999999999999999999999999999999999999999999999999976556666666789999999999
Q ss_pred ccchhHhhHHHHHHHhc-CCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 81 VGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~-G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
+||||++++||.+|+++ |++|+++|+|+|++++++++..+....|+++++.+...+|.+++.+++..+.+.+||+||||
T Consensus 111 vGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIID 190 (433)
T 2xxa_A 111 AGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVD 190 (433)
T ss_dssp SSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999998 99999999999999999999888888899999887777888888888888776789999999
Q ss_pred CCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCce
Q 012680 160 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 160 tpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
|||+++.+..++.++..+..+..|+++++|+|+.+++++.+.++.|+..+++.|||+||+|++.+++.+.++.+.++.||
T Consensus 191 TpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i~gvVlnK~D~~~~~g~~l~i~~~~~~Pi 270 (433)
T 2xxa_A 191 TAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270 (433)
T ss_dssp CCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSCCCCEEEECTTSSSCCTHHHHHHHHHCCCE
T ss_pred CCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCCCeEEEEecCCCCccHHHHHHHHHHHCCCe
Confidence 99999888889999988888889999999999998999999899998888999999999999998888999999999999
Q ss_pred eEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhc-ccChhHHHHHHHHHHhhccchhh
Q 012680 240 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRV 318 (458)
Q Consensus 240 ~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~-~~~~edl~~~l~~~~~~g~~~~~ 318 (458)
.|+|++++++++.+|+|.+++++++|++|+.+++|.+++.++++.++++.+++.++ +|+++||++|++++.+||+++++
T Consensus 271 ~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~ 350 (433)
T 2xxa_A 271 KFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASL 350 (433)
T ss_dssp EEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSCHHH
T ss_pred EEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhh
Confidence 99999999999999999999999999999999999999998888889999999999 89999999999999999999999
Q ss_pred hhccCCCCCCChHHHH--HHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHHH
Q 012680 319 IGMIPGMGKITPAQVR--EAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRM 396 (458)
Q Consensus 319 ~~~~pg~~~~~~~~~~--~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~ 396 (458)
++||||++++++ +.+ .++++++++++||+|||++||+||++| ++||++|||+|||++++|||+||+||++|++||
T Consensus 351 ~~~lPg~~~~~~-~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~--~~sr~~ria~gsg~~~~~v~~l~~~~~~~~~~~ 427 (433)
T 2xxa_A 351 MGKLPGMGQIPD-NVKSQMDDKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMM 427 (433)
T ss_dssp HCC----------------CHHHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcCcchhhh-hhhccccHHHHHHHHHHHHcCCHHHhcCcccc--CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999987642 233 567889999999999999999999999 579999999999999999999999999999988
Q ss_pred HHHhh
Q 012680 397 KNLMG 401 (458)
Q Consensus 397 ~~~~~ 401 (458)
|+|.+
T Consensus 428 ~~~~~ 432 (433)
T 2xxa_A 428 KKMKK 432 (433)
T ss_dssp HHCC-
T ss_pred HHhcC
Confidence 88753
No 4
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=3.8e-79 Score=632.04 Aligned_cols=388 Identities=46% Similarity=0.757 Sum_probs=351.6
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++||+.+|++|||++++|++|++++++++.+.++..+++|.+++.++++++|...+++...++.+. +|.+++++|++|
T Consensus 31 l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~i~l~--~~~vi~i~G~~G 108 (425)
T 2ffh_A 31 LREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLK--DRNLWFLVGLQG 108 (425)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHHTTSSCCCCCCC--SSEEEEEECCTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHhCCCcccccCC--CCeEEEEECCCC
Confidence 478999999999999999999999999999999999999999999999999999998765556665 788999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
+||||++.+||.+++..|++|+++++|+++|++++++..++...|+++++.+...+|.+++.+++..++..+||+|||||
T Consensus 109 sGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~~~DvVIIDT 188 (425)
T 2ffh_A 109 SGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDT 188 (425)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 99999999999999999999999999999999999998888888999998877778888888888887667899999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCcee
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~ 240 (458)
||+++.+..++.++..+...+.|+++++|+|+.+++++.+.++.|++.+++.|||+||+|++.+++.++++.+.+|.||.
T Consensus 189 aG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~ 268 (425)
T 2ffh_A 189 AGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIY 268 (425)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEE
T ss_pred CCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEE
Confidence 99999888899999888888899999999999989999999999988899999999999999999999999999999999
Q ss_pred EeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHHHHHHHHhhccchhhhh
Q 012680 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIG 320 (458)
Q Consensus 241 fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~~~ 320 (458)
|+|.|++++|+++|+|++++++++|++|+.+++|++++.+++++.+.+. . +|+++||++|++++.|||+++++++
T Consensus 269 flg~Ge~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~----~-~f~~~d~~~ql~~~~kmg~~~~~~~ 343 (425)
T 2ffh_A 269 FAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA----K-ELSLEDFLKQMQNLKRLGPFSEILG 343 (425)
T ss_dssp EEECSSSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC----------------CCCHHHHHHHHHHHHHTCCCTTGGG
T ss_pred EEeCCCChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHH----H-hcCHHHHHHHHHHhhCcCChhhhhc
Confidence 9999999999999999999999999999999999998877665554443 2 8999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHHHHHHh
Q 012680 321 MIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM 400 (458)
Q Consensus 321 ~~pg~~~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 400 (458)
|+||+++ +++.+++++++|++||+|||++||+||++| ++||++|||+|||++++|||+||+||++|++|||+|.
T Consensus 344 ~~Pg~~~----~~~~~~~~~~~~~~i~~smt~~e~~~p~~~--~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 417 (425)
T 2ffh_A 344 LLPGVPQ----GLKVDEKAIKRLEAIVLSMTPEERKDPRIL--NGSRRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLE 417 (425)
T ss_dssp TSCSCSC----CTTSCHHHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCchh----hccccHHHHHHHHHHHHcCCHHHhcCcccc--ChHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999973 223568899999999999999999999999 5799999999999999999999999999999988876
Q ss_pred h
Q 012680 401 G 401 (458)
Q Consensus 401 ~ 401 (458)
+
T Consensus 418 ~ 418 (425)
T 2ffh_A 418 K 418 (425)
T ss_dssp C
T ss_pred C
Confidence 4
No 5
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=7.7e-77 Score=626.87 Aligned_cols=453 Identities=29% Similarity=0.531 Sum_probs=386.0
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++||+.+|++|||++++|++|++++++++.+.++..+++|.+++.++++++|.+++++...++.+.+.+|++|+++|++|
T Consensus 32 l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~G 111 (504)
T 2j37_W 32 LKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQG 111 (504)
T ss_dssp HHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHHhccccchhccccCCCeEEEEECCCC
Confidence 47899999999999999999999999999999999999999999999999999999976656655556789999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
|||||++.+||.+|+++|++|++|++|+|||++++++..++...+++++......+|.+++.+++..+.+.+||+|||||
T Consensus 112 vGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~~~DvvIIDT 191 (504)
T 2j37_W 112 SGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDT 191 (504)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 99999999999999999999999999999999999998888888999988766778888888888888778999999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCcee
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~ 240 (458)
||+.+.+..++.++..+...+.|+.+++|+|+..++++.+.+..|++.+++.++|+||+|...+++.+.++.+.+|.||.
T Consensus 192 pG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 192 SGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPII 271 (504)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEE
T ss_pred CCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeCCccccchHHHHHHHHHhCCCeE
Confidence 99998777788888777776789999999999888888888888877778889999999999888888888889999999
Q ss_pred EeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHHHHHHHHhhccchhhhh
Q 012680 241 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIG 320 (458)
Q Consensus 241 fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~~~ 320 (458)
|+|++++++++.+|+|..++++++|.||+.+++|.+.+. .+++++++.+++.+++|+++||+++++++.+||++++|++
T Consensus 272 fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~-~~~~~~~l~~k~~~g~~~l~d~~~~l~~~~~~G~~~~~~~ 350 (504)
T 2j37_W 272 FIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILG 350 (504)
T ss_dssp EEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT-TTCCCTTTTTSCTTSGGGGCCCHHHHHHCCCCCCCCSSCC
T ss_pred EeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999998877 4555677888999999999999999999999999999999
Q ss_pred ccCCCCC--CChHHHHHHHHhhHHHHHHHHhCCcccccC---ccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHH
Q 012680 321 MIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVR 395 (458)
Q Consensus 321 ~~pg~~~--~~~~~~~~~~~~~~~~~~~i~smt~~e~~~---p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~ 395 (458)
||||++. ++..+...+++.++|+++||+|||++||+| |++|..++||++|||+|||++++|||+||+||++|++|
T Consensus 351 ~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~ 430 (504)
T 2j37_W 351 MIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQM 430 (504)
T ss_dssp CCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHCTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCC
T ss_pred hccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999987 543233456889999999999999999999 99996568999999999999999999999999999999
Q ss_pred HHHHhhh---hcCCCCCC-ccc-hHHH-h-hcccCCCCcchhcccc-chhhhhhcCCCCCCCCCCCCCC
Q 012680 396 MKNLMGV---MEGGSLPA-LSN-LEDA-L-KSEQKAPPGTARRKRR-SESRRQFVDPASTRPSPRGFGG 456 (458)
Q Consensus 396 ~~~~~~~---~~~~~~~~-~~~-~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 456 (458)
||+|.+. +++|.|+. ++. .+.+ + +..+.++|.|.+.-.+ +++++.++++....+ .+|||
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 497 (504)
T 2j37_W 431 VKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAA--GNMKG 497 (504)
T ss_dssp CCCCSCTTHHHHTCCCCSSHHHHHHHHHCCCCCCSHHHHHHHHHHTTSSSSHHHHHHC-----------
T ss_pred HHHhcccccCCcCCchhhhhhhhhhhHHHHHHHhhcCHHHHHhcCCCchHHHHHHHHhcccc--ccccc
Confidence 9988652 23344441 111 1111 1 3458888888887766 778888888765433 44443
No 6
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=1.6e-72 Score=585.73 Aligned_cols=395 Identities=38% Similarity=0.676 Sum_probs=338.7
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++|++.+|++|||+++++++|+++++++.++.++..++++.+++.+++++++.+++++...++.+..++|++|+++|++|
T Consensus 30 ~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~G 109 (432)
T 2v3c_C 30 IKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQG 109 (432)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHHhCCCCcCccccCCCCeEEEEECCCC
Confidence 36899999999999999999999999999999888899999999999999999999976545555545678999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCC-CccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~-~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
+||||++.+||.+++++|++|+++++|+|||++++++..++...|+++++.. ...+|..++.+++..+ .+||+||||
T Consensus 110 vGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~--~~~D~vIID 187 (432)
T 2v3c_C 110 SGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF--KKADVLIID 187 (432)
T ss_dssp SSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT--SSCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh--hCCCEEEEc
Confidence 9999999999999999999999999999999999999888888899998876 4556666666666665 689999999
Q ss_pred CCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeee-eeceeeeecccCCCCCcceeeeeeccCCc
Q 012680 160 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-GITGAILTKLDGDSRGGAALSVKEVSGKP 238 (458)
Q Consensus 160 tpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~-~i~GvIlnk~D~~~~~g~~~~i~~~~g~p 238 (458)
|||+++.+..++.++..+.....|+.+++|+|+..++++...+..|+..+ ++.|+|+||+|...+++.+.++.+.++.|
T Consensus 188 T~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~~~~g~~l~~~~~~~~p 267 (432)
T 2v3c_C 188 TAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAP 267 (432)
T ss_dssp CCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSCSTTHHHHHHHHHSSCC
T ss_pred CCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCccchHHHHHHHHHHCCC
Confidence 99999888888888888888888999999999998888888888888777 88999999999998888888888899999
Q ss_pred eeEeecCCccccCCCCCcchhhhhhhcccchhHHHHHHHHHHhHHhHHHHHHHHhhcccChhHHHHHHHHHHhhccchhh
Q 012680 239 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRV 318 (458)
Q Consensus 239 I~fig~g~~v~dl~~f~p~~~~sr~lG~~dv~~l~e~~~e~~~e~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~ 318 (458)
+.|+|.|++++++.+|+|..++++++|+||+.+++|.+.+.+++++ +++.+++..++|+++||++|++++.+|||+++|
T Consensus 268 i~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~ 346 (432)
T 2v3c_C 268 IKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESIDAIMRGKFTLNELMTQLEAIENMGSMKKI 346 (432)
T ss_dssp EEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTHHHHCCSCCHHHHHHHHTTTTSCC------
T ss_pred EEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999887776 889999999999999999999999999999999
Q ss_pred hhccCCCCCCC-hHHHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHHHH
Q 012680 319 IGMIPGMGKIT-PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 397 (458)
Q Consensus 319 ~~~~pg~~~~~-~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~ 397 (458)
++||||++.+. ..+.+.+++++++|++||+|||++||+||++| ++||++|||+|||++++|||+||+||++|++||+
T Consensus 347 ~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i--~~sr~~rI~~gsg~~~~~v~~ll~~~~~~~~~~~ 424 (432)
T 2v3c_C 347 LSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII--KASRIRRIARGSGTTENDVREVLRYYETTKNAID 424 (432)
T ss_dssp -----------------CCHHHHHHHHHHHTTSCHHHHSSCTTC--CHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc--CHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999987642 22233457789999999999999999999999 5899999999999999999999999999988888
Q ss_pred HHh
Q 012680 398 NLM 400 (458)
Q Consensus 398 ~~~ 400 (458)
++-
T Consensus 425 ~~~ 427 (432)
T 2v3c_C 425 KLH 427 (432)
T ss_dssp CC-
T ss_pred Hhh
Confidence 753
No 7
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=6.1e-41 Score=332.59 Aligned_cols=265 Identities=39% Similarity=0.646 Sum_probs=241.4
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceee-eEeccCCCeEEEeeccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQ 79 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~-~~~~~~~p~iI~i~G~~ 79 (458)
++||+.+|++|||+++++++|++++++++.+.++..+++|.+++++++.+++...+++...+ +.+... +.+++++|++
T Consensus 29 ~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~~vi~i~G~~ 107 (297)
T 1j8m_F 29 IKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPDKI-PYVIMLVGVQ 107 (297)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTTCSCCCCCSCSSS-SEEEEEECSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHhccccccccccCCC-CeEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999999999976544 555443 8899999999
Q ss_pred cccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 80 GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 80 GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
|+||||++.+||.+++..|++|+++|+|++||++.+++..+....|+++++.....+|.+++.+++..+.+.+||+||||
T Consensus 108 G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViID 187 (297)
T 1j8m_F 108 GTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVD 187 (297)
T ss_dssp CSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999999999999999999999999999999999888888899998876667888888888888876799999999
Q ss_pred CCcccc--ccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCC
Q 012680 160 TAGRLQ--IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGK 237 (458)
Q Consensus 160 tpg~l~--~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~ 237 (458)
|||+++ .+..++.++..+.....++.+++|+|+.+++++.+.++.|++.+++.|+|+||+|...+++.+.++...++.
T Consensus 188 Tpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~i~gvVlnk~D~~~~~g~~~~~~~~~~~ 267 (297)
T 1j8m_F 188 TAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGA 267 (297)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEEEEEECGGGCTTHHHHHHHHHTTTC
T ss_pred CCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhCCCCEEEEeCCCCCcchHHHHHHHHHHCc
Confidence 999998 777788888888778889999999999888888888888887788899999999999888888899999999
Q ss_pred ceeEeecCCccccCCCCCcchhhhhhhcc
Q 012680 238 PIKLVGRGERMEDLEPFYPDRMAGRILGM 266 (458)
Q Consensus 238 pI~fig~g~~v~dl~~f~p~~~~sr~lG~ 266 (458)
||.|+++|++++|+.+|+|++++++++|+
T Consensus 268 pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~ 296 (297)
T 1j8m_F 268 TIKFIGTGEKIDELEVFNPRRFVARLHHH 296 (297)
T ss_dssp CEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred CEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 99999999999999999999999999986
No 8
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=2.1e-39 Score=324.67 Aligned_cols=262 Identities=29% Similarity=0.504 Sum_probs=228.9
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccce-----eeeEeccCCCeEEEe
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV-----SELVFAKSRPTVILL 75 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~-----~~~~~~~~~p~iI~i 75 (458)
++||+.+|++|||+++++++|++++++++.+.++..+ +.++++++|.+++++.. .++.+...++.++++
T Consensus 37 ~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~i 110 (320)
T 1zu4_A 37 FEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFEN------IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFML 110 (320)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHH------HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHH------HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEE
Confidence 4799999999999999999999999999888765432 88999999999998765 567776678899999
Q ss_pred eccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcc---cccccee-cCCCccChHHHHHhhHHHHHhc
Q 012680 76 AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE---QVGVPVY-TAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 76 ~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~---~~gv~v~-~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
+|++|+||||++.+||.+++..|++|+++|+|++++++.+++..+.+ ..+++++ ......+|...+.+.+......
T Consensus 111 vG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~~~~~~ 190 (320)
T 1zu4_A 111 VGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQ 190 (320)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998888877765 6788888 4334566776677777766567
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcC------cceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG 225 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~------~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~ 225 (458)
+||+|||||||+++.+..++.++..+..++. |+.+++|+++.+++++++.++.|++.+++.|+|+||+|.+..+
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~~~~~~~~~i~GvVltk~d~~~~~ 270 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKG 270 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHTTTSCCCEEEEECGGGCSCT
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHHHHHhhcCCCcEEEEeCCCCCCch
Confidence 9999999999999987778888877666543 7899999999988888888888988889999999999999999
Q ss_pred cceeeeeeccCCceeEeecCCccccCCCCCcchhhhhhhcccch
Q 012680 226 GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 269 (458)
Q Consensus 226 g~~~~i~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~dv 269 (458)
+.+.++...++.||.|+++|++++|+++|+|++|+++++| +++
T Consensus 271 g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~-~~~ 313 (320)
T 1zu4_A 271 GIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS-GFM 313 (320)
T ss_dssp THHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG-GGC
T ss_pred hHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC-Ccc
Confidence 9999999999999999999999999999999999999998 544
No 9
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=1.3e-38 Score=316.76 Aligned_cols=252 Identities=38% Similarity=0.642 Sum_probs=225.4
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++||+.+|++|||+++++++|++++++ .+|. +.++++++|.++++... ++.+...+|.+++++|++|
T Consensus 48 ~~~l~~~L~~~dv~~~~~~~~~~~~~~----------~~~~--~~~~~~~~l~~~l~~~~-~~~~~~~~~~vi~ivG~~G 114 (306)
T 1vma_A 48 REELEELLIQADVGVETTEYILERLEE----------KDGD--ALESLKEIILEILNFDT-KLNVPPEPPFVIMVVGVNG 114 (306)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTT----------CCSC--HHHHHHHHHHHHTCSCC-CCCCCSSSCEEEEEECCTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHh----------cCHH--HHHHHHHHHHHHhCCCC-CCcccCCCCeEEEEEcCCC
Confidence 479999999999999999999999977 3454 89999999999998654 5555556789999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
+||||++.+||.+++..|.+|+++++|++|+++.+++..+....+++++......+|..++.+++..+...+||+|||||
T Consensus 115 sGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDt 194 (306)
T 1vma_A 115 TGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDT 194 (306)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred ChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999999999999999999999999999999999988888888999887766677877777777776668999999999
Q ss_pred CccccccHHHHHHHHHHHhhc------CcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeec
Q 012680 161 AGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 234 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~ 234 (458)
||....+..++.++..+...+ .|+++++|+|+.+++++++.++.|.+..++.|+|+||+|.+.++|.+.++...
T Consensus 195 pg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~~~~~~i~gvVlTk~D~~~~gG~~l~~~~~ 274 (306)
T 1vma_A 195 AGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARE 274 (306)
T ss_dssp CCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEEEECGGGCSCTTHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEeCCCCccchHHHHHHHHH
Confidence 999887888888888777664 37899999999999988888888888899999999999999999999999999
Q ss_pred cCCceeEeecCCccccCCCCCcchhhhhhhc
Q 012680 235 SGKPIKLVGRGERMEDLEPFYPDRMAGRILG 265 (458)
Q Consensus 235 ~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG 265 (458)
++.||.|+++|++++|+++|+|++++++++|
T Consensus 275 ~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~ 305 (306)
T 1vma_A 275 LGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS 305 (306)
T ss_dssp HCCCEEEEECSSSGGGEEECCHHHHHHHHTC
T ss_pred HCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9999999999999999999999999999986
No 10
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=1.5e-37 Score=311.99 Aligned_cols=266 Identities=36% Similarity=0.600 Sum_probs=240.5
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEe-----ccCCCeEEEe
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVF-----AKSRPTVILL 75 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~-----~~~~p~iI~i 75 (458)
++||+.+|++|||+++++++|++++++++.+.++..+.+|.+++.+++++++.+++++.. .+.+ ...+|.++++
T Consensus 56 ~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~g~vi~l 134 (328)
T 3e70_C 56 LDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSR-RIDLIEEIRKAEKPYVIMF 134 (328)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHHSCCSS-CCCHHHHHHSSCSSEEEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHhCCcc-ccchhhhcccCCCCeEEEE
Confidence 478999999999999999999999999999999988999999999999999999999653 2322 3457899999
Q ss_pred eccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcE
Q 012680 76 AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDV 155 (458)
Q Consensus 76 ~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~Dv 155 (458)
+|++||||||++.+||.++...|.+|.++++|++++++.+++..+....|++++......+|...+.+.+......++|+
T Consensus 135 vG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~ 214 (328)
T 3e70_C 135 VGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDV 214 (328)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSE
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999998999998887777788888888887776678999
Q ss_pred EEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeecc
Q 012680 156 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 235 (458)
Q Consensus 156 VIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~ 235 (458)
++|||+|+.+.+..++.++..+..++.|++.++|+|+.+++++.+.++.|++..+++++|+||+|++.++|.+.++...+
T Consensus 215 vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~ 294 (328)
T 3e70_C 215 VLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVI 294 (328)
T ss_dssp EEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHH
T ss_pred hHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHH
Confidence 99999999988888999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred CCceeEeecCCccccCCCCCcchhhhhhhccc
Q 012680 236 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 236 g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~ 267 (458)
+.||.|+++|++++|+++|+|++++++++|-.
T Consensus 295 ~~pi~~i~~Ge~v~dl~~~~~~~~~~~llg~~ 326 (328)
T 3e70_C 295 DAPILFVGVGQGYDDLRPFEKEWFLERIFGEE 326 (328)
T ss_dssp TCCEEEEECSSSTTCEEECCHHHHHHHHTC--
T ss_pred CCCEEEEeCCCCccccccCCHHHHHHHHhCCc
Confidence 99999999999999999999999999999854
No 11
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=2.7e-37 Score=306.23 Aligned_cols=265 Identities=51% Similarity=0.816 Sum_probs=230.9
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
+++++.+|+.+|+++.+++++++++.....|..+..+.++.+++.+++.+++...++.....+.+. ++.+++++|++|
T Consensus 31 l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~--~~~~i~i~g~~G 108 (295)
T 1ls1_A 31 LREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLK--DRNLWFLVGLQG 108 (295)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHTTSSCCCCCCC--SSEEEEEECCTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHHCCCCceeecC--CCeEEEEECCCC
Confidence 468999999999999999999999999888877655667778889999999999987543445555 688999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
+||||++.+||.+++..|.+|+++|+|++++.+.+++..+.+..|+++++.+...+|.++.+.++..+...+||+|||||
T Consensus 109 ~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDt 188 (295)
T 1ls1_A 109 SGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDT 188 (295)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999999999999999999999999988887777778899988766677888878888887657899999999
Q ss_pred CccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCcee
Q 012680 161 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 240 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~ 240 (458)
||..+.|...+.++..+...+.|+.+++|+|+.+++++.+.++.|++.+++.|+|+||+|.+.+++.+.++.+.+|.||.
T Consensus 189 pp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~i~givlnk~d~~~~~g~~~~~~~~~~~pi~ 268 (295)
T 1ls1_A 189 AGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIY 268 (295)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEECGGGCSSCHHHHHHHHHHCCCEE
T ss_pred CCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCCCCEEEEECCCCCccHHHHHHHHHHHCcCEE
Confidence 99998888889999888888889999999999888888888888888889999999999999999999999999999999
Q ss_pred EeecCCccccCCCCCcchhhhhhhccc
Q 012680 241 LVGRGERMEDLEPFYPDRMAGRILGMG 267 (458)
Q Consensus 241 fig~g~~v~dl~~f~p~~~~sr~lG~~ 267 (458)
|+|+|++++|+++|+|++++++++|+|
T Consensus 269 ~i~~g~~~~dl~~f~~~~~~~~ll~~g 295 (295)
T 1ls1_A 269 FAGVSEKPEGLEPFYPERLAGRILGMG 295 (295)
T ss_dssp EEC------CCEECCHHHHHHHHTTCC
T ss_pred EEeCCCCccccccCCHHHHHHHHhcCC
Confidence 999999999999999999999999986
No 12
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.1e-38 Score=270.28 Aligned_cols=115 Identities=25% Similarity=0.502 Sum_probs=100.0
Q ss_pred HHHHhhcccChhHHHHHHHHHHhhccchhhhhccC-CCCC-CChHHHHHHHHhhHHHHHHHHhCCcccccCccccccChh
Q 012680 289 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPV 366 (458)
Q Consensus 289 ~~k~~~~~~~~edl~~~l~~~~~~g~~~~~~~~~p-g~~~-~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~ 366 (458)
.+++.+++||++||++|++++.||||+++|++||| |+++ ++..+.+.+++++++|++||+|||++||+||+|| ++|
T Consensus 2 ~~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~~~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P~ii--~~S 79 (119)
T 2jqe_A 2 SGTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNPKII--DSS 79 (119)
T ss_dssp ---CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCCSSCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCGGGC--CHH
T ss_pred hhHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchhhccchhhHhhhHHHHHHHHHHHHhCCHHHHhChhhc--CHH
Confidence 35678899999999999999999999999999999 9987 6533344578899999999999999999999999 589
Q ss_pred hhhhhccccCchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 012680 367 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 409 (458)
Q Consensus 367 r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~ 409 (458)
|++|||+||||+++|||+||+||++|++|||+|. +|++|
T Consensus 80 R~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m~----~g~~~ 118 (119)
T 2jqe_A 80 RIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMK----KNKLP 118 (119)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTTCC----SCCCC
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc----cCCCC
Confidence 9999999999999999999999999977777654 45565
No 13
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=100.00 E-value=4e-38 Score=261.00 Aligned_cols=103 Identities=41% Similarity=0.678 Sum_probs=72.6
Q ss_pred ccChhHHHHHHHHHHhhccchhhhhccCCCCCCCh-HHHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccc
Q 012680 296 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQD 374 (458)
Q Consensus 296 ~~~~edl~~~l~~~~~~g~~~~~~~~~pg~~~~~~-~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~g 374 (458)
+||++||++|++++.||||+++|++||||+++++. .+.+.+++++++|++||+|||++||+||++| ++||++|||+|
T Consensus 1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P~ii--~~SR~~RIA~G 78 (105)
T 1hq1_A 1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAG 78 (105)
T ss_dssp CCCHHHHHHHHTC----------------------------CCSSHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCCcccchhhhhhhHHHHHHHHHHHHcCCHHHhhChhhc--CHHHHHHHHcc
Confidence 49999999999999999999999999999987653 2344568899999999999999999999999 57999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHh
Q 012680 375 SGKTEQQVSQLVAQLFQMRVRMKNLM 400 (458)
Q Consensus 375 sg~~~~~v~~ll~~~~~~~~~~~~~~ 400 (458)
||++++|||+||+||++|++|||+|.
T Consensus 79 SG~~v~eVn~LLkqf~~m~kmmk~m~ 104 (105)
T 1hq1_A 79 SGMQVQDVNRLLKQFDDMQRMMKKMK 104 (105)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999875
No 14
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=100.00 E-value=1e-37 Score=266.50 Aligned_cols=108 Identities=27% Similarity=0.553 Sum_probs=94.9
Q ss_pred hcccChhHHHHHHHHHHhhccchhhhhccCCCCC--CChHHHHHHHHhhHHHHHHHHhCCcccccC---ccccccChhhh
Q 012680 294 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRR 368 (458)
Q Consensus 294 ~~~~~~edl~~~l~~~~~~g~~~~~~~~~pg~~~--~~~~~~~~~~~~~~~~~~~i~smt~~e~~~---p~~~~~~~~r~ 368 (458)
.|+|||+||++|++++.||||+++|++||||+++ ++..+.+.+++++++|++||+|||++||+| |+||..++||+
T Consensus 12 ~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~ii~~~~SRk 91 (129)
T 1mfq_C 12 HGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRI 91 (129)
T ss_dssp CSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC--------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHHHHHHCTHHH
T ss_pred cCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCCccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcccccCChHHH
Confidence 4689999999999999999999999999999987 554445578899999999999999999999 99995558999
Q ss_pred hhhccccCchHHHHHHHHHHHHHHHHHHHHHhh
Q 012680 369 KRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 401 (458)
Q Consensus 369 ~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 401 (458)
+|||+||||+++|||+||+||++|++|||+|.+
T Consensus 92 ~RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm~~ 124 (129)
T 1mfq_C 92 QRVARGSGVSTRDVQELLTQYTKFAQMVKKMGG 124 (129)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998887653
No 15
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=100.00 E-value=2.5e-37 Score=258.21 Aligned_cols=104 Identities=27% Similarity=0.558 Sum_probs=93.6
Q ss_pred ccChhHHHHHHHHHHhhccchhhhhccCCCCC-C-ChHHHHHHHHhhHHHHHHHHhCCcccccC---ccccccChhhhhh
Q 012680 296 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-I-TPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKR 370 (458)
Q Consensus 296 ~~~~edl~~~l~~~~~~g~~~~~~~~~pg~~~-~-~~~~~~~~~~~~~~~~~~i~smt~~e~~~---p~~~~~~~~r~~r 370 (458)
+||++||++|++++.||||+++|++||||+++ + +..+.+.+++++++|++||+|||++||+| |+||+.++||++|
T Consensus 1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~R 80 (109)
T 1qb2_A 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQR 80 (109)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCcccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCccccccchHHHHH
Confidence 49999999999999999999999999999987 5 43445578899999999999999999999 9999755899999
Q ss_pred hccccCchHHHHHHHHHHHHHHHHHHHHH
Q 012680 371 VAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399 (458)
Q Consensus 371 ia~gsg~~~~~v~~ll~~~~~~~~~~~~~ 399 (458)
||+|||++++|||+||+||++|++|||+|
T Consensus 81 IA~GSG~~v~eVn~LLkqf~~m~kmmk~m 109 (109)
T 1qb2_A 81 VARGSGVSTRDVQELLTQYTKFAQMVKKM 109 (109)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988864
No 16
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=1.1e-35 Score=310.13 Aligned_cols=264 Identities=38% Similarity=0.640 Sum_probs=233.0
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
+++|+.+||+|||++.++++|++++++++.+. .+++.+++.++++++|.++|+.....+++.-.++.+++++|.+|
T Consensus 228 l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNG 303 (503)
T 2yhs_A 228 FEELEEQLLIADVGVETTRKIITNLTEGASRK----QLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNG 303 (503)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH----TCCBGGGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCc
Confidence 36899999999999999999999999988764 45678899999999999999976666777667789999999999
Q ss_pred ccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEeC
Q 012680 81 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 160 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDt 160 (458)
|||||++.+|+.++...|.+|.+.++|+++.++.+|+..+....++.++.......+...+.+.+......+||+|||||
T Consensus 304 SGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDT 383 (503)
T 2yhs_A 304 VGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADT 383 (503)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999988999999999999988888887766666788777655556777777777777668899999999
Q ss_pred CccccccHHHHHHHHHHHhhc------CcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeec
Q 012680 161 AGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 234 (458)
Q Consensus 161 pg~l~~d~~l~~el~~l~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~ 234 (458)
+|+++.+..++.++..+..+. .|+.++||+|++++++++..++.|+..++++|+|+||+|++.++|.+.++...
T Consensus 384 aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~ 463 (503)
T 2yhs_A 384 AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQ 463 (503)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHH
T ss_pred CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHH
Confidence 999988888888887776543 37899999999999999999999999899999999999999999999999999
Q ss_pred cCCceeEeecCCccccCCCCCcchhhhhhhcccc
Q 012680 235 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 268 (458)
Q Consensus 235 ~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG~~d 268 (458)
++.||.|+|+|++++|+.+|++++|+++++|+.+
T Consensus 464 ~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~~~ 497 (503)
T 2yhs_A 464 FGIPIRYIGVGERIEDLRPFKADDFIEALFARED 497 (503)
T ss_dssp HCCCEEEEECSSSGGGEEECCHHHHHHHHHCC--
T ss_pred HCCCEEEEecCCChhhcccCCHHHHHHHHhcccc
Confidence 9999999999999999999999999999998763
No 17
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.4e-34 Score=289.63 Aligned_cols=261 Identities=35% Similarity=0.611 Sum_probs=227.1
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccce--eeeEeccCCCeEEEeecc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV--SELVFAKSRPTVILLAGL 78 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~--~~~~~~~~~p~iI~i~G~ 78 (458)
++||+.+|++|||+++++++|++++++++.+.++ ++.+++.++++++|.++++... .++++.-.++.+++++|+
T Consensus 90 ~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~ 165 (359)
T 2og2_A 90 LDELEEALLVSDFGPKITVRIVERLREDIMSGKL----KSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGV 165 (359)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSC----CSHHHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcC
Confidence 3689999999999999999999999999888754 5778999999999999999765 567766667899999999
Q ss_pred ccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCc-cChHHHHHhhHHHHHhcCCcEEE
Q 012680 79 QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQIAKQGLEEAKKKNVDVVI 157 (458)
Q Consensus 79 ~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~-~~~~~i~~~~l~~~~~~~~DvVI 157 (458)
+||||||++.+||.++...+.+|.+.++|++|+++.+|+..+....+++++..... ..|...+.+.+......++|+++
T Consensus 166 nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~l 245 (359)
T 2og2_A 166 NGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVL 245 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHH
Confidence 99999999999999999889999999999999998889887776678888876655 67777777777665556789999
Q ss_pred EeCCccccccHHHHHHHHHHHhh------cCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeee
Q 012680 158 VDTAGRLQIDKAMMDELKDVKRV------LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 231 (458)
Q Consensus 158 IDtpg~l~~d~~l~~el~~l~~~------~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i 231 (458)
+||+|+.+.+...+.+|...... ..|+++++|+|++++++....+..|....+++++|+||+|++.++|.+.++
T Consensus 246 ldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi 325 (359)
T 2og2_A 246 CDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSV 325 (359)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHH
T ss_pred HHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHH
Confidence 99999988777777777533332 247888999999899999999988988889999999999999999999999
Q ss_pred eeccCCceeEeecCCccccCCCCCcchhhhhhhc
Q 012680 232 KEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 265 (458)
Q Consensus 232 ~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG 265 (458)
...++.||.|+|.|++++|+++|+|++|+++++|
T Consensus 326 ~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 326 VEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp HHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999875
No 18
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=1.4e-33 Score=280.57 Aligned_cols=254 Identities=37% Similarity=0.627 Sum_probs=218.0
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhcccee-----eeEecc-------C
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS-----ELVFAK-------S 68 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~-----~~~~~~-------~ 68 (458)
++||+.+|++|||+++++++|++++++++. +++.++++++|.+++++... ++.+.. .
T Consensus 32 ~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (304)
T 1rj9_A 32 LEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEP 100 (304)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHHHHTTTTCTTCHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCcccccccccccccccccccccCC
Confidence 478999999999999999999999988654 57889999999999986542 343322 2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
++.+++++|++||||||++.+||.++...+.+|.+.++|++++++.+++..+....+++++.......|...+.+.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999988999999999999998888888776666788777666667777676767665
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhc------CcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
...++|++++||+|+.+.+...+.++......+ .|+.+++++|+.+++++.+.++.|....+++++|+||.|..
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 556899999999999887777777775544332 47889999999999999999999988889999999999999
Q ss_pred CCCcceeeeeeccCCceeEeecCCccccCCCCCcchhhhhhhc
Q 012680 223 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 265 (458)
Q Consensus 223 ~~~g~~~~i~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG 265 (458)
.++|.+.++.+.++.||.|+|+|++++|+++|+|++++++++|
T Consensus 261 a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 261 AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp CCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred ccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999886
No 19
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-32 Score=274.07 Aligned_cols=261 Identities=35% Similarity=0.619 Sum_probs=222.2
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccce--eeeEeccCCCeEEEeecc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV--SELVFAKSRPTVILLAGL 78 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~--~~~~~~~~~p~iI~i~G~ 78 (458)
++||+.+|++|||+++++++|++++++++.+.++ .+.+++.++++++|.++++... .++++.-.++.+++++|+
T Consensus 33 ~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~ 108 (302)
T 3b9q_A 33 LDELEEALLVSDFGPKITVRIVERLREDIMSGKL----KSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGV 108 (302)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSC----CSHHHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcC
Confidence 3689999999999999999999999999887653 5678899999999999998764 456666667899999999
Q ss_pred ccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCc-cChHHHHHhhHHHHHhcCCcEEE
Q 012680 79 QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQIAKQGLEEAKKKNVDVVI 157 (458)
Q Consensus 79 ~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~-~~~~~i~~~~l~~~~~~~~DvVI 157 (458)
+||||||++.+||.++...+.+|.+.++|++++++.+|+..+....+++++..... ..|...+.+.+......++|.++
T Consensus 109 nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~l 188 (302)
T 3b9q_A 109 NGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVL 188 (302)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcchH
Confidence 99999999999999999889999999999999988888887766667888776555 66776677777655445789999
Q ss_pred EeCCccccccHHHHHHHHHHHhhc------CcceEEEEEeccchhhHhHhhhhheeeeeeceeeeecccCCCCCcceeee
Q 012680 158 VDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 231 (458)
Q Consensus 158 IDtpg~l~~d~~l~~el~~l~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i 231 (458)
+||+|+.+.+...+.++......+ .|+++++|+|++++++....+..|....+++++|+||+|++.++|.+.++
T Consensus 189 ldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 189 CDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp ECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred HhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 999999887777777765333222 47888999999889999888888887788999999999999999999999
Q ss_pred eeccCCceeEeecCCccccCCCCCcchhhhhhhc
Q 012680 232 KEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 265 (458)
Q Consensus 232 ~~~~g~pI~fig~g~~v~dl~~f~p~~~~sr~lG 265 (458)
...++.||.|++.|++++|+++|+|++++++++|
T Consensus 269 ~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp HHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9999999999999999999999999999999875
No 20
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=100.00 E-value=1.5e-32 Score=272.28 Aligned_cols=252 Identities=24% Similarity=0.321 Sum_probs=207.0
Q ss_pred ChhHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeecccc
Q 012680 1 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 80 (458)
Q Consensus 1 ~~~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~G 80 (458)
++|++.+|+++||+.+++++|++++++..++.. .+++ +++.++++++|.++++... .+.+. .++.+++++|++|
T Consensus 42 ~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~l~~~~-~~~~~-~~g~vi~lvG~~G 115 (296)
T 2px0_A 42 LRKAEKLLQETGIKESTKTNTLKKLLRFSVEAG---GLTE-ENVVGKLQEILCDMLPSAD-KWQEP-IHSKYIVLFGSTG 115 (296)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSS---CCCT-TTHHHHHHHHHHTTSCCGG-GSCCC-CCSSEEEEEESTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHhhccc---CCCH-HHHHHHHHHHHHHHhCCcc-ccccc-CCCcEEEEECCCC
Confidence 368999999999999999999999954444433 3444 6789999999999998643 23322 3578999999999
Q ss_pred ccchhHhhHHHHHHHh-cCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhcCCcEEEEe
Q 012680 81 VGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 159 (458)
Q Consensus 81 sGKTT~a~~LA~~L~~-~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIID 159 (458)
+||||++.+||.+++. .|++|+++++|++++++.+++..++...|++++... ++.+ ++.++..+ .+||+||||
T Consensus 116 sGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~---~~~~-l~~al~~~--~~~dlvIiD 189 (296)
T 2px0_A 116 AGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCY---TKEE-FQQAKELF--SEYDHVFVD 189 (296)
T ss_dssp SSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCS---SHHH-HHHHHHHG--GGSSEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecC---CHHH-HHHHHHHh--cCCCEEEEe
Confidence 9999999999999985 899999999999999999999888888888776532 2333 45555543 679999999
Q ss_pred CCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhh-HhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCc
Q 012680 160 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 238 (458)
Q Consensus 160 tpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~-~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~p 238 (458)
|||+...+...+.++..+.....++++++|+|++.+.. +.+.+..|. .+++.|+|+||+|.+.+++.+.++...+|.|
T Consensus 190 T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~~~~~~~~~~~p 268 (296)
T 2px0_A 190 TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVFNILAESKIG 268 (296)
T ss_dssp CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCCHHHHHHHHTCSCC
T ss_pred CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccchhHHHHHHHHHCcC
Confidence 99999887777777776655455788999999977744 444455565 5788999999999999999999999999999
Q ss_pred eeEeecCCcc-ccCCCCCcchhhhhhhc
Q 012680 239 IKLVGRGERM-EDLEPFYPDRMAGRILG 265 (458)
Q Consensus 239 I~fig~g~~v-~dl~~f~p~~~~sr~lG 265 (458)
|.|++.|+++ +|+.+|+|+.++++++|
T Consensus 269 i~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 269 VGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp CSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred EEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 9999999999 89999999999999886
No 21
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=99.94 E-value=6.5e-28 Score=184.06 Aligned_cols=66 Identities=38% Similarity=0.509 Sum_probs=61.4
Q ss_pred HHHHHHHhhHHHHHHHHhCCcccccCccccccChhhhhhhccccCchHHHHHHHHHHHHHHHHHHHHH
Q 012680 332 QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 399 (458)
Q Consensus 332 ~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~ 399 (458)
+.+.++++++++++||+|||++||+||++| ++||++|||+|||++++|||+||+||++|++|||+|
T Consensus 4 ~~~~~e~~lkr~~aII~SMT~~Er~nP~ii--~~SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m 69 (69)
T 1dul_A 4 NDFLEQKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 69 (69)
T ss_dssp HHHHHCCHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHcCCHHHHhCcccc--CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 579999999999999999999999999999998874
No 22
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.68 E-value=1.2e-16 Score=157.15 Aligned_cols=148 Identities=22% Similarity=0.302 Sum_probs=99.5
Q ss_pred CCCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh---------------------hhccccc
Q 012680 68 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQVG 125 (458)
Q Consensus 68 ~~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~---------------------~~~~~~g 125 (458)
.++++|+++ +++|+||||+|.+||..|++.|++|++||+|+++|.....+. ......+
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 169 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAK 169 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCC
Confidence 356777777 679999999999999999999999999999998875432221 0011245
Q ss_pred cceecCCC-ccChHHH-----HHhhHHHHHhcCCcEEEEeCCcccccc-HHHHHHHHHHHhhcCcceEEEEEecc-ch-h
Q 012680 126 VPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQID-KAMMDELKDVKRVLNPTEVLLVVDAM-TG-Q 196 (458)
Q Consensus 126 v~v~~~~~-~~~~~~i-----~~~~l~~~~~~~~DvVIIDtpg~l~~d-~~l~~el~~l~~~~~~~~vllVvda~-~g-~ 196 (458)
+.+++.+. ..++.++ +.+.++.+. ..||+|||||||.+... ... +.. .+|.+++|+.+. +. .
T Consensus 170 l~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~~------l~~--~aD~vllVv~~~~~~~~ 240 (286)
T 3la6_A 170 FDLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAI------VGR--HVGTTLMVARYAVNTLK 240 (286)
T ss_dssp EEEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHH------HTT--TCSEEEEEEETTTSBHH
T ss_pred EEEEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchHHHHH------HHH--HCCeEEEEEeCCCCcHH
Confidence 66776654 3345543 355666654 57999999999987642 211 111 248899999883 33 3
Q ss_pred hHhHhhhhhe-eeeeeceeeeecccCCCC
Q 012680 197 EAAALVTTFN-IEIGITGAILTKLDGDSR 224 (458)
Q Consensus 197 ~~~~~~~~~~-~~~~i~GvIlnk~D~~~~ 224 (458)
.+......+. ...++.|+|+|+++....
T Consensus 241 ~~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 241 EVETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 3333333332 246789999999986543
No 23
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.67 E-value=5.3e-16 Score=151.44 Aligned_cols=147 Identities=22% Similarity=0.336 Sum_probs=97.3
Q ss_pred CCCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhh---------------------hccccc
Q 012680 68 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------------------LGEQVG 125 (458)
Q Consensus 68 ~~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~---------------------~~~~~g 125 (458)
.++++|+++ .++|+||||+|.+||..|++.|+||++||+|+++|.....+.. .....+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 159 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIED 159 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCC
Confidence 356788887 5699999999999999999999999999999988754322110 001146
Q ss_pred cceecCCC-ccChHHH-----HHhhHHHHHhcCCcEEEEeCCccccc-cHHHHHHHHHHHhhcCcceEEEEEecc-ch-h
Q 012680 126 VPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDAM-TG-Q 196 (458)
Q Consensus 126 v~v~~~~~-~~~~~~i-----~~~~l~~~~~~~~DvVIIDtpg~l~~-d~~l~~el~~l~~~~~~~~vllVvda~-~g-~ 196 (458)
+.+++.+. ..++.++ +.+.++.++ ..||+|||||||.+.. +...+... +|.+++|+.+. +. .
T Consensus 160 l~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l~~~--------aD~vilVv~~~~~~~~ 230 (271)
T 3bfv_A 160 LDVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQLFSKF--------TGNVVYVVNSENNNKD 230 (271)
T ss_dssp EEEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHHHHHHH--------HCEEEEEEETTSCCHH
T ss_pred EEEEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHHHHHHH--------CCEEEEEEeCCCCcHH
Confidence 67776654 3445443 355666654 5799999999998754 22222211 38899999883 33 3
Q ss_pred hHhHhhhhhe-eeeeeceeeeecccCCC
Q 012680 197 EAAALVTTFN-IEIGITGAILTKLDGDS 223 (458)
Q Consensus 197 ~~~~~~~~~~-~~~~i~GvIlnk~D~~~ 223 (458)
.+......+. ...++.|+|+|++|...
T Consensus 231 ~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 231 EVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 3333333332 25678999999998654
No 24
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.65 E-value=7.3e-16 Score=152.53 Aligned_cols=150 Identities=26% Similarity=0.334 Sum_probs=98.8
Q ss_pred CCCeEEEeec-cccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh---------------------hhccccc
Q 012680 68 SRPTVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQVG 125 (458)
Q Consensus 68 ~~p~iI~i~G-~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~---------------------~~~~~~g 125 (458)
.++++|++++ ++|+||||+|.+||..|++.|+||++||+|+++|.....+. ......+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 181 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 181 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCC
Confidence 3567888875 69999999999999999999999999999998765432221 0001246
Q ss_pred cceecCCC-ccChHHH-----HHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc-ch-hh
Q 012680 126 VPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QE 197 (458)
Q Consensus 126 v~v~~~~~-~~~~~~i-----~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~-~g-~~ 197 (458)
+.+++.+. ..++.++ +.+.++.+. ..||+|||||||.+...... .+.. .+|.+++|+.+. +. ..
T Consensus 182 l~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-----~l~~--~ad~vilV~~~~~~~~~~ 253 (299)
T 3cio_A 182 FDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAA-----VVGR--SVGTSLLVARFGLNTAKE 253 (299)
T ss_dssp EEEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-----HHGG--GCSEEEEEEETTTSCTTH
T ss_pred EEEEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHH-----HHHH--HCCEEEEEEcCCCChHHH
Confidence 67776654 3344443 355666654 67999999999987542211 1111 248889999873 22 33
Q ss_pred HhHhhhhhe-eeeeeceeeeecccCCCCC
Q 012680 198 AAALVTTFN-IEIGITGAILTKLDGDSRG 225 (458)
Q Consensus 198 ~~~~~~~~~-~~~~i~GvIlnk~D~~~~~ 225 (458)
+...+..+. ..+++.|+|+|+++.....
T Consensus 254 ~~~~~~~l~~~~~~~~GvVlN~~~~~~~~ 282 (299)
T 3cio_A 254 VSLSMQRLEQAGVNIKGAILNGVIKRAST 282 (299)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEECCCCCSS
T ss_pred HHHHHHHHHhCCCCeEEEEEeCCccCCCC
Confidence 333333332 2567899999999976443
No 25
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.65 E-value=3e-16 Score=151.88 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=98.4
Q ss_pred CeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhc---------------cccccceecCCC
Q 012680 70 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---------------EQVGVPVYTAGT 133 (458)
Q Consensus 70 p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~---------------~~~gv~v~~~~~ 133 (458)
+++|+++ ++||+||||+|.+||.+|+++|++|++||+|++.+.....+.... ...++.+++.+.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~ 97 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQF 97 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGG
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccc
Confidence 4466655 889999999999999999999999999999999875422221100 112344444322
Q ss_pred ccC------------hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc--hhhHh
Q 012680 134 EVK------------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAA 199 (458)
Q Consensus 134 ~~~------------~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~--g~~~~ 199 (458)
... ....+++.+..+.+..||+|||||||.+.... .. .......|.+++|+.+.. ...+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~--~~----~~~~~~aD~viiv~~~~~~s~~~~~ 171 (262)
T 2ph1_A 98 LLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAP--LT----VMQDAKPTGVVVVSTPQELTAVIVE 171 (262)
T ss_dssp GSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHH--HH----HHHHHCCSEEEEEECSSSCCHHHHH
T ss_pred cCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHH--HH----HHhhccCCeEEEEecCccchHHHHH
Confidence 110 11233344433323689999999999875211 11 111113588888887632 22222
Q ss_pred Hhhhhhe-eeeeeceeeeecccCCC----------CCcceeeeeeccCCceeEeecCC
Q 012680 200 ALVTTFN-IEIGITGAILTKLDGDS----------RGGAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 200 ~~~~~~~-~~~~i~GvIlnk~D~~~----------~~g~~~~i~~~~g~pI~fig~g~ 246 (458)
.....+. ..+++.|+|+|+++... ....+..+.+.+|.|+ ++..+
T Consensus 172 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~Ip 227 (262)
T 2ph1_A 172 KAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGF--FTSIP 227 (262)
T ss_dssp HHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSE--EEECC
T ss_pred HHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCe--EEEee
Confidence 2222221 24567899999997421 0122345556677776 44443
No 26
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.65 E-value=2.6e-16 Score=149.73 Aligned_cols=165 Identities=18% Similarity=0.126 Sum_probs=103.7
Q ss_pred CCeEEEee-ccccccchhHhhHHHHHHHhc-CCceEEeeccccCchhhhHH-------------hh-------------h
Q 012680 69 RPTVILLA-GLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQL-------------VI-------------L 120 (458)
Q Consensus 69 ~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~rp~a~~~l-------------~~-------------~ 120 (458)
.+++|+++ ++||+||||+|.+||.+|+++ |++|++||+|++.+.....+ .. .
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ 82 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence 45667666 789999999999999999998 99999999999843321111 00 0
Q ss_pred ccccccceecCCCccCh-----HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch
Q 012680 121 GEQVGVPVYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 195 (458)
Q Consensus 121 ~~~~gv~v~~~~~~~~~-----~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g 195 (458)
....++.+++.+..... .+.+.+.++.+. ..||+|||||||.+.... . .+ ...+|.+++|+.+...
T Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~---~---~~--l~~ad~viiv~~~~~~ 153 (245)
T 3ea0_A 83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHVG---V---WV--LEHLDELCIVTTPSLQ 153 (245)
T ss_dssp EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTH---H---HH--GGGCSEEEEEECSSHH
T ss_pred ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHH---H---HH--HHHCCEEEEEecCcHH
Confidence 11245666665432211 234456666654 579999999999875321 1 11 1124888888877321
Q ss_pred --h---hHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecC
Q 012680 196 --Q---EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 245 (458)
Q Consensus 196 --~---~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g 245 (458)
. ...+.+..+.......|+|+|+++...... ...+.+.+|.|+ ++..
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~-~~~~~~~~~~~v--~~~i 205 (245)
T 3ea0_A 154 SLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT-SDEIEKVIGRPI--SKRI 205 (245)
T ss_dssp HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC-HHHHHHHHTSCE--EEEE
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC-HHHHHHHhCCCe--EEEC
Confidence 2 223333333334566889999998664332 244556678877 4444
No 27
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.64 E-value=7.9e-16 Score=142.33 Aligned_cols=151 Identities=20% Similarity=0.158 Sum_probs=96.9
Q ss_pred eEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 71 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 71 ~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
++|+++ ++||+||||++.+||.+|+++|++|++||+|++...... + .....++++++.+. ..+.+.+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~-~--~~~~~~~~~~~~~~-----~~l~~~l~~l~ 73 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNW-S--KAGKAAFDVFTAAS-----EKDVYGIRKDL 73 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH-H--TTSCCSSEEEECCS-----HHHHHTHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHH-H--hcCCCCCcEEecCc-----HHHHHHHHHhc
Confidence 456665 889999999999999999999999999999987654321 1 12334566666532 45566677765
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc-chhhHhHh---hhhh---eeeeeeceeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAAL---VTTF---NIEIGITGAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~-~g~~~~~~---~~~~---~~~~~i~GvIlnk~D~~ 222 (458)
..||+|||||||.... ..... .. ..|.+++|+.+. ....+... +..+ +..+.+ ++|+|+++..
T Consensus 74 -~~yD~viiD~~~~~~~--~~~~~----l~--~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~ 143 (206)
T 4dzz_A 74 -ADYDFAIVDGAGSLSV--ITSAA----VM--VSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEM 143 (206)
T ss_dssp -TTSSEEEEECCSSSSH--HHHHH----HH--HCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTT
T ss_pred -CCCCEEEEECCCCCCH--HHHHH----HH--HCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCC
Confidence 5799999999998742 11111 11 147888888773 22222222 2222 334566 9999999865
Q ss_pred CC-CcceeeeeeccCCce
Q 012680 223 SR-GGAALSVKEVSGKPI 239 (458)
Q Consensus 223 ~~-~g~~~~i~~~~g~pI 239 (458)
.. ...+....+.+|.|+
T Consensus 144 ~~~~~~~~~~l~~~~~~v 161 (206)
T 4dzz_A 144 ATMLNVLKESIKDTGVKA 161 (206)
T ss_dssp EEEEHHHHHHHHHHTCCB
T ss_pred chHHHHHHHHHHHcCCce
Confidence 32 122333344466666
No 28
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.62 E-value=1.2e-15 Score=147.04 Aligned_cols=165 Identities=19% Similarity=0.239 Sum_probs=99.9
Q ss_pred eEEEe-eccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-------------hHHhhh--------ccccccce
Q 012680 71 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLVIL--------GEQVGVPV 128 (458)
Q Consensus 71 ~iI~i-~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-------------~~l~~~--------~~~~gv~v 128 (458)
++|++ +++||+||||++.+||.+|+++|++|++||+|++.+... +.+... ....++.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~ 82 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKV 82 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEE
Confidence 45555 488999999999999999999999999999999643321 111100 01235555
Q ss_pred ecCCCccCh-----HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHh
Q 012680 129 YTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL 201 (458)
Q Consensus 129 ~~~~~~~~~-----~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~ 201 (458)
++.....+. .+.+.+.+..+. ..||+|||||||...... .. +.. .+|.+++|+.+... ..+...
T Consensus 83 lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~--~~----~~~--~ad~vi~v~~~~~~~~~~~~~~ 153 (263)
T 1hyq_A 83 VPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERSA--VI----AIA--AAQELLLVVNPEISSITDGLKT 153 (263)
T ss_dssp EECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHHH--HH----HHH--HSSEEEEEECSSHHHHHHHHHH
T ss_pred EcCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChHH--HH----HHH--HCCEEEEEeCCChhHHHHHHHH
Confidence 553222111 223445555554 689999999999875211 11 111 24788888877322 233333
Q ss_pred hhhhee-eeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCC
Q 012680 202 VTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 202 ~~~~~~-~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~ 246 (458)
...+.. ...+.|+|+|+++..........+.+.++.|+ ++..+
T Consensus 154 ~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~--~~~Ip 197 (263)
T 1hyq_A 154 KIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKV--IGLIP 197 (263)
T ss_dssp HHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCE--EEEEE
T ss_pred HHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCe--EEECC
Confidence 222221 45678999999987644333444555677776 44443
No 29
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.62 E-value=1.6e-15 Score=146.75 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=97.9
Q ss_pred CCCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhh--------------------------
Q 012680 68 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL-------------------------- 120 (458)
Q Consensus 68 ~~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~-------------------------- 120 (458)
.++++|+++ ++||+||||+|.+||.+|+ +|++|++||+|++.+....-....
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 103 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTI 103 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHhh
Confidence 356777776 8899999999999999999 999999999999875432110000
Q ss_pred -ccccccceecCCCccC---------hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEE
Q 012680 121 -GEQVGVPVYTAGTEVK---------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 190 (458)
Q Consensus 121 -~~~~gv~v~~~~~~~~---------~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVv 190 (458)
....|+.+++.+.... ....+.+.+..+. ..||+|||||||.+.. .... . ...+|.+++|+
T Consensus 104 ~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~--~~~~----~--l~~aD~vivv~ 174 (267)
T 3k9g_A 104 INVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDV--TLKN----A--LLCSDYVIIPM 174 (267)
T ss_dssp EEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSH--HHHH----H--HTTCSEEEEEE
T ss_pred ccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccH--HHHH----H--HHHCCeEEEEe
Confidence 0013555555443211 1234555665544 6899999999998742 1111 1 12258888888
Q ss_pred eccc-h-h---hHhHhhhhheeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCccccC
Q 012680 191 DAMT-G-Q---EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDL 251 (458)
Q Consensus 191 da~~-g-~---~~~~~~~~~~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v~dl 251 (458)
.+.. . . ...+.+..+.....+ ++|+|+++.......+....+. +.|+ ++..|..+.+
T Consensus 175 ~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~~~~~~~~~~~~~l~~-~~~~--~~~Ip~~~~~ 236 (267)
T 3k9g_A 175 TAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRFKKNRTHKTLFEILKT-KDRF--LGTISEREDL 236 (267)
T ss_dssp ESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEECTTCSCCHHHHHHTT-STTE--EEEEEC----
T ss_pred CCChHHHHHHHHHHHHHHHHhccCCE-EEEEecccCcchHHHHHHHHhc-Cccc--ceecCcHHHH
Confidence 7732 2 2 222333334333444 5999999544333322222222 4555 5666554443
No 30
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.61 E-value=1e-15 Score=151.29 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=102.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-----------hHHhh--------------hccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI--------------LGEQ 123 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-----------~~l~~--------------~~~~ 123 (458)
++++|+++|+||+||||+|++||.+|+++|++|++||+|++.+... +.+.. ....
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~~ 119 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEGF 119 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEECG
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhccCC
Confidence 5678888899999999999999999999999999999999764321 11100 0113
Q ss_pred cccceecCCCccCh-------HHHHHhhHHHH-HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch
Q 012680 124 VGVPVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 195 (458)
Q Consensus 124 ~gv~v~~~~~~~~~-------~~i~~~~l~~~-~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g 195 (458)
.|+.+++.+..... .......+... ....||+|||||||.+..... . .....+|.+++|+.+...
T Consensus 120 ~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~-~------~~l~~aD~viiv~~~~~~ 192 (307)
T 3end_A 120 NGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-A------APLQHADQAVVVTANDFD 192 (307)
T ss_dssp GGCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-G------GGGGTCSEEEEEECSSHH
T ss_pred CCceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHHH-H------HHHHHCCEEEEEecCcHH
Confidence 46666654432111 11112233331 235799999999997653210 0 011235888888877322
Q ss_pred --hhH---hHhhhhh--eeeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCc
Q 012680 196 --QEA---AALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 247 (458)
Q Consensus 196 --~~~---~~~~~~~--~~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~ 247 (458)
..+ .+.+..+ +..+.+.|+|+|+++.. ..+..+.+.+|.|+ ++..+.
T Consensus 193 s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~---~~~~~~~~~~g~~v--~~~Ip~ 246 (307)
T 3end_A 193 SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRR--LAHMPD 246 (307)
T ss_dssp HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCE--EEEECC
T ss_pred HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH---HHHHHHHHHcCCCc--eeeCCc
Confidence 232 3333322 34677789999999853 33455566778887 454433
No 31
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.61 E-value=6.9e-16 Score=153.75 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=100.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-----------hHHhh--------------hccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI--------------LGEQ 123 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-----------~~l~~--------------~~~~ 123 (458)
+.+||+|+||||+||||+|.|||.+|++.|+||++||+|++.+... +.... ....
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 126 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEGF 126 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEECG
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeecC
Confidence 5689999999999999999999999999999999999998754321 11000 0111
Q ss_pred cccceecCCCccChH----HHHHhhHHH----HHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc--
Q 012680 124 VGVPVYTAGTEVKPS----QIAKQGLEE----AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-- 193 (458)
Q Consensus 124 ~gv~v~~~~~~~~~~----~i~~~~l~~----~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~-- 193 (458)
.++.+++.+...... ......+.. ..++.||++++|||+...... +. ..+..++.+++|+.+.
T Consensus 127 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~-~~------~al~aAd~viIvt~~e~~ 199 (314)
T 3fwy_A 127 NGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGG-FA------APLQHADQAVVVTANDFD 199 (314)
T ss_dssp GGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGG-GG------GGGGTCSEEEEEECSSHH
T ss_pred CCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhh-hH------hHHhhCCeEEEEeCCcHH
Confidence 244555443221111 111111221 124679999999998754211 10 1122358889888772
Q ss_pred chh---hHhHhhhhhee--eeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCCcc
Q 012680 194 TGQ---EAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 248 (458)
Q Consensus 194 ~g~---~~~~~~~~~~~--~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~~v 248 (458)
.-+ .....+..+.. ...+.|+|+|+.+.. ..+..+.+.++.++ ++..|..
T Consensus 200 Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~---~~v~~~a~~~~~~~--lg~IP~d 254 (314)
T 3fwy_A 200 SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRR--LAHMPDL 254 (314)
T ss_dssp HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCE--EEEECCC
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch---hHHHHHHHHhCCeE--EEEecCc
Confidence 222 23333344432 456789999986543 23345556677777 5655543
No 32
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.60 E-value=1.4e-15 Score=144.11 Aligned_cols=165 Identities=22% Similarity=0.299 Sum_probs=98.9
Q ss_pred eEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-------------hHHhhh--------cc-ccccc
Q 012680 71 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLVIL--------GE-QVGVP 127 (458)
Q Consensus 71 ~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-------------~~l~~~--------~~-~~gv~ 127 (458)
++|+++ ++||+||||++.+||.+|+++|++|++||+|++.+... +.+... .. ..++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 456665 78999999999999999999999999999999653221 111100 00 13444
Q ss_pred eecCCCccCh-----HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhH
Q 012680 128 VYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAA 200 (458)
Q Consensus 128 v~~~~~~~~~-----~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~ 200 (458)
+++.....+. .+.+.+.+..+. ..||+|||||||....+. ..+ ....|.+++|+.+... ..+..
T Consensus 83 ~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~------~~~--~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 83 VLPGAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLDA------MSA--MLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EECCCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHHH------HHH--HTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEeCCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHHH------HHH--HHHCCeEEEEecCCcccHHHHHH
Confidence 5542211111 122344455544 679999999999875211 111 1235788888877422 23333
Q ss_pred hhhhhee-eeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCC
Q 012680 201 LVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 201 ~~~~~~~-~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~ 246 (458)
....+.. ...+.|+|+|+++..........+.+.++.|+ ++..+
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~--~~~Ip 198 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPL--LAVIP 198 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCE--EEEEE
T ss_pred HHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccc--eeeCC
Confidence 3322221 45678999999997654433444555677776 44443
No 33
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.60 E-value=3.1e-15 Score=143.56 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=100.8
Q ss_pred eEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh------------------------hhccccc
Q 012680 71 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV------------------------ILGEQVG 125 (458)
Q Consensus 71 ~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~------------------------~~~~~~g 125 (458)
++|+++ ++||+||||+|.+||.+|+++|++|++||+|++.+.....+. ......+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 466665 789999999999999999999999999999995443211110 0001135
Q ss_pred cceecCCCccC----hHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHh
Q 012680 126 VPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAA 199 (458)
Q Consensus 126 v~v~~~~~~~~----~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~ 199 (458)
+.+++.+.... ....+.+.+..+....||+|||||||.+... ... + ...+|.+++|+++... ..+.
T Consensus 83 l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~--~~~----~--l~~ad~vi~v~~~~~~s~~~~~ 154 (260)
T 3q9l_A 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--ALM----A--LYFADEAIITTNPEVSSVRDSD 154 (260)
T ss_dssp EEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHH--HHH----H--HHTCSEEEEEECSSHHHHHHHH
T ss_pred EEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHH--HHH----H--HHhCCEEEEEecCChhHHHHHH
Confidence 66665443211 2234566666665328999999999977521 111 1 1135888999887322 2222
Q ss_pred Hhhhhhee---------eeeeceeeeecccCCC--CCcc--eeeeeeccCCceeEeecCCc
Q 012680 200 ALVTTFNI---------EIGITGAILTKLDGDS--RGGA--ALSVKEVSGKPIKLVGRGER 247 (458)
Q Consensus 200 ~~~~~~~~---------~~~i~GvIlnk~D~~~--~~g~--~~~i~~~~g~pI~fig~g~~ 247 (458)
.....+.. .....|+|+|+++... +... ...+.+.+|.|+ ++..|.
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ip~ 213 (260)
T 3q9l_A 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKL--VGVIPE 213 (260)
T ss_dssp HHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEE--EEEEEC
T ss_pred HHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCce--EEecCC
Confidence 22222211 1135689999998642 1112 245566678887 455543
No 34
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.59 E-value=3.9e-15 Score=146.31 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=92.7
Q ss_pred ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcc-----------------------ccccceecCCC
Q 012680 77 GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE-----------------------QVGVPVYTAGT 133 (458)
Q Consensus 77 G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~-----------------------~~gv~v~~~~~ 133 (458)
++||+||||+|.+||.+|+++|++|++||+|++.+........... ..++++++.+.
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~vlp~~~ 123 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTDNLDLIPGTF 123 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESSSSEEEECCCG
T ss_pred CCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccCCCeEEEeCCc
Confidence 5999999999999999999999999999999987642111000000 13455665543
Q ss_pred ccCh-------------HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--h--
Q 012680 134 EVKP-------------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q-- 196 (458)
Q Consensus 134 ~~~~-------------~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~-- 196 (458)
.... ...+.+.+..+. ..||+|||||||.+... .... +. ..|.+++|+.+... .
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~--~~~~---l~---~aD~viiv~~~~~~s~~~~ 194 (298)
T 2oze_A 124 DLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVY--TNNA---IV---ASDYVMIPLQAEEESTNNI 194 (298)
T ss_dssp GGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHH--HHHH---HH---HCSEEEEEECGGGCCHHHH
T ss_pred hHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHH--HHHH---HH---HCCeEEEEecCcHHHHHHH
Confidence 2211 122344454443 67999999999987521 1111 11 14888999877321 2
Q ss_pred -hHhHhhh----hheeeeeeceeeeecccCCCC--CcceeeeeeccCC
Q 012680 197 -EAAALVT----TFNIEIGITGAILTKLDGDSR--GGAALSVKEVSGK 237 (458)
Q Consensus 197 -~~~~~~~----~~~~~~~i~GvIlnk~D~~~~--~g~~~~i~~~~g~ 237 (458)
...+.+. .++..+.+.|+|+|++|.... ...+..+.+.++.
T Consensus 195 ~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 195 QNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence 2222222 234567889999999987542 1233344555554
No 35
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.58 E-value=3.7e-15 Score=146.09 Aligned_cols=170 Identities=17% Similarity=0.192 Sum_probs=99.3
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhH------------Hhhh-------------cccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVIL-------------GEQV 124 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~------------l~~~-------------~~~~ 124 (458)
.++|+++|+||+||||+|.+||.+|+++|++|++||+|++.+..... +... ....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 81 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYG 81 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGG
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCC
Confidence 35777789999999999999999999999999999999987543211 1100 0123
Q ss_pred ccceecCCCccCh-----HHHH--HhhHHHHH--hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccc-
Q 012680 125 GVPVYTAGTEVKP-----SQIA--KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT- 194 (458)
Q Consensus 125 gv~v~~~~~~~~~-----~~i~--~~~l~~~~--~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~- 194 (458)
|+.+++.+..... .+.. ...+..+. ...||+|||||||.+..+. +...+ .....|.+++|+.+..
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~-~~~~~----~~~~aD~viiv~~~~~~ 156 (289)
T 2afh_E 82 GVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGG-FAMPI----RENKAQEIYIVCSGEMM 156 (289)
T ss_dssp GCEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTT-TTHHH----HTTCCCEEEEEECSSHH
T ss_pred CeEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccch-hhhhh----hhhhCCEEEEEecCCHH
Confidence 4555554322110 1111 12222221 2579999999998764322 11111 1123588888887732
Q ss_pred h-hh---HhHhhhhhe--eeeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCC
Q 012680 195 G-QE---AAALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 195 g-~~---~~~~~~~~~--~~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~ 246 (458)
. .. ..+.+..+. ..+.+.|+|+|+++..........+.+.+|.|+ ++..+
T Consensus 157 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~g~~~--l~~Ip 212 (289)
T 2afh_E 157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELIIALANKLGTQM--IHFVP 212 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHHHHHHHHHTSCE--EEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHHHHHHHHHHHcCccc--cccCC
Confidence 1 22 223333332 245678999999875332233444555677776 34443
No 36
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.58 E-value=4e-15 Score=143.84 Aligned_cols=169 Identities=17% Similarity=0.153 Sum_probs=99.3
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhH------------Hhhh-----------ccccccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVIL-----------GEQVGVP 127 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~------------l~~~-----------~~~~gv~ 127 (458)
++|+++|+||+||||+|.+||.+|+++|++|++||+|++.+....- +... ....++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~ 81 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR 81 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence 4677789999999999999999999999999999999987543211 1110 1123566
Q ss_pred eecCCCccCh-----HHHH--HhhHHHHH--hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--h
Q 012680 128 VYTAGTEVKP-----SQIA--KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q 196 (458)
Q Consensus 128 v~~~~~~~~~-----~~i~--~~~l~~~~--~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~ 196 (458)
+++.+..... .+.. ...+..+. ...||+|||||||.+..+. +...+ . ...+|.+++|+.+... .
T Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~-~~~~~---~-~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGG-FAMPI---R-EGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTT-TTHHH---H-TTSCCEEEEEECSSHHHHH
T ss_pred EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhhh-hhhhh---h-HhhCCEEEEeecCchhhHH
Confidence 6654432110 1111 11222221 3569999999998764321 11111 0 1135888888877321 2
Q ss_pred hH---hHhhhhhee--eeeeceeeeecccCCCCCcceeeeeeccCCceeEeecCC
Q 012680 197 EA---AALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 197 ~~---~~~~~~~~~--~~~i~GvIlnk~D~~~~~g~~~~i~~~~g~pI~fig~g~ 246 (458)
.+ .+.+..+.. .+++.|+|+|+++..........+.+.+|.|+ ++..+
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~~~~v--~~~Ip 209 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQL--IHFVP 209 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHHHHHHHHTCCE--EEEEC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhHHHHHHHHHHcCCcc--cccCC
Confidence 22 233333322 45678999999975433333444555677776 34443
No 37
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.56 E-value=3.2e-15 Score=142.08 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=91.5
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHH-------------------hhhc------------
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------------------VILG------------ 121 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l-------------------~~~~------------ 121 (458)
|+++|+||+||||+|.+||.+|+++|+||++||+|++ +.....+ ....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPK 81 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCc
Confidence 4459999999999999999999999999999999996 3221111 0000
Q ss_pred ----------cccccce-ecCCC------c-cChH-HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcC
Q 012680 122 ----------EQVGVPV-YTAGT------E-VKPS-QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN 182 (458)
Q Consensus 122 ----------~~~gv~v-~~~~~------~-~~~~-~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~ 182 (458)
...++.+ +..+. . ..+. ..+++.+..+....||+|||||||.+.... ... ...
T Consensus 82 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~--~~~------l~~ 153 (254)
T 3kjh_A 82 VDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLT--RGT------AKA 153 (254)
T ss_dssp CTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCC--HHH------HTT
T ss_pred hhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHHH--HHH------HHH
Confidence 0012222 22111 0 1111 346777777634789999999999875321 111 123
Q ss_pred cceEEEEEecc-chhhHhHhhhhheeee--eeceeeeecccCCCCCcceeeeeeccC-Cce
Q 012680 183 PTEVLLVVDAM-TGQEAAALVTTFNIEI--GITGAILTKLDGDSRGGAALSVKEVSG-KPI 239 (458)
Q Consensus 183 ~~~vllVvda~-~g~~~~~~~~~~~~~~--~i~GvIlnk~D~~~~~g~~~~i~~~~g-~pI 239 (458)
.|.+++|+++. .....+..+..+.... ...++|+|+++... ....+.+.++ .++
T Consensus 154 aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~~---~~~~~~~~~~~~~~ 211 (254)
T 3kjh_A 154 VDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIK---EEKLIKKHLPEDKI 211 (254)
T ss_dssp CSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCHH---HHHHHHHHSCGGGE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCChh---HHHHHHHHhcCCcc
Confidence 58889998873 2222223332333333 34679999998532 2233445555 444
No 38
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.53 E-value=1.8e-14 Score=138.85 Aligned_cols=162 Identities=25% Similarity=0.318 Sum_probs=95.0
Q ss_pred CCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhh---------hcc---------cccccee
Q 012680 69 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------LGE---------QVGVPVY 129 (458)
Q Consensus 69 ~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~---------~~~---------~~gv~v~ 129 (458)
++++|+++ ++||+||||+|.+||.+|+++|++|++||+|++.+.. ..+.. +.. ..++.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~-~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~vl 83 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNAT-SGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLL 83 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHTTCCCSCCHHHHHTTCCGGGTCEEETTEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHH-HHhCCCCCCCHHHHHcCCCHHHHccccCCEEEE
Confidence 45677776 7899999999999999999999999999999975422 11100 000 1345566
Q ss_pred cCCCccChH--HHHH--hhHHHHHh-cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--h---hHh
Q 012680 130 TAGTEVKPS--QIAK--QGLEEAKK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q---EAA 199 (458)
Q Consensus 130 ~~~~~~~~~--~i~~--~~l~~~~~-~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~---~~~ 199 (458)
+.+...... ++.. ..+..+.. ..||+|||||||.+... .... + . .+|.+++|+.+... . ...
T Consensus 84 p~~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~~--~~~~---l-~--~aD~viiv~~~~~~s~~~~~~~~ 155 (257)
T 1wcv_1 84 PATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPL--TLNA---L-A--AAEGVVVPVQAEYYALEGVAGLL 155 (257)
T ss_dssp CCCTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCHH--HHHH---H-H--HCSEEEEEEESSTHHHHHHHHHH
T ss_pred eCChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCHH--HHHH---H-H--HCCeEEEEecCchHHHHHHHHHH
Confidence 554322111 1110 22322221 57999999999987521 1111 1 1 24888999987322 1 222
Q ss_pred Hhhhh----heeeeeeceeeeecccCCCCC--cceeeeeeccCCce
Q 012680 200 ALVTT----FNIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPI 239 (458)
Q Consensus 200 ~~~~~----~~~~~~i~GvIlnk~D~~~~~--g~~~~i~~~~g~pI 239 (458)
+.+.. ++..+++.|+|+|+++..... .....+.+.+|.|+
T Consensus 156 ~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 156 ATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHTCTTCEEEEEEEESBCTTCSHHHHHHHHHHHHHGGGB
T ss_pred HHHHHHHHHhCCCceEEEEEEEeECCCcHHHHHHHHHHHHHccccc
Confidence 22222 234567789999999865322 12233444456665
No 39
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.51 E-value=7.8e-14 Score=141.48 Aligned_cols=42 Identities=38% Similarity=0.464 Sum_probs=37.5
Q ss_pred eEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCch
Q 012680 71 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 112 (458)
Q Consensus 71 ~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~ 112 (458)
++|+++ ++||+||||+|.+||.+|++.|+||++||+|++.+.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~ 44 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNA 44 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTT
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCCh
Confidence 455665 899999999999999999999999999999998754
No 40
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.48 E-value=8e-14 Score=136.63 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=72.6
Q ss_pred CeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhc---------ccccc-ceecCCC--ccC
Q 012680 70 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---------EQVGV-PVYTAGT--EVK 136 (458)
Q Consensus 70 p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~---------~~~gv-~v~~~~~--~~~ 136 (458)
+++|+++ ++||+||||+|.+||.+|+++|++|++||+|+..+.....+.... ...++ ++++... ...
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 83 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAE 83 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTT
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcC
Confidence 4566666 789999999999999999999999999999994444332221110 11234 4444311 111
Q ss_pred hH-----HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEec
Q 012680 137 PS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 192 (458)
Q Consensus 137 ~~-----~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda 192 (458)
+. ..+.+.+..+. ..||+|||||||.+... .. .+ ...+|.+++|+.+
T Consensus 84 ~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~--~~----~~--l~~aD~viiv~~~ 135 (286)
T 2xj4_A 84 RPEEEQVAGFEAAFARAM-AECDFILIDTPGGDSAI--TR----MA--HGRADLVVTPMND 135 (286)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHH--HH----HH--HHTCSEEEEEEES
T ss_pred hhhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHH--HH----HH--HHHCCEEEEEEcC
Confidence 11 14455666654 67999999999987421 11 11 1235888888876
No 41
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.47 E-value=2.2e-13 Score=137.50 Aligned_cols=41 Identities=37% Similarity=0.535 Sum_probs=37.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
..++++++|+||+||||+|++||.+|++.|+||++||+|++
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45677777999999999999999999999999999999994
No 42
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.47 E-value=6.8e-14 Score=131.00 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=85.0
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
|.+.+++||+||||++.+||.+|+++| +|++||+|++.+.. ..+.. . ....++++. . .+..+. .
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~-~-~l~~~vi~~-------~----~l~~l~-~ 66 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR-G-SLPFKVVDE-------R----QAAKYA-P 66 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH-S-CCSSEEEEG-------G----GHHHHG-G
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC-C-CCCcceeCH-------H----HHHHhh-h
Confidence 334458999999999999999999999 99999999987543 22211 1 111112221 1 344443 6
Q ss_pred CCcEEEEeCCcc-ccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhhee--eeeeceeeeecccCCC-CC
Q 012680 152 NVDVVIVDTAGR-LQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI--EIGITGAILTKLDGDS-RG 225 (458)
Q Consensus 152 ~~DvVIIDtpg~-l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~--~~~i~GvIlnk~D~~~-~~ 225 (458)
.||+|||||||. ..... .. +. ..+|.+++|+.+... ..+......+.. ... .++|+|+++... ..
T Consensus 67 ~yD~viiD~p~~~~~~~~--~~----~l--~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~~ 137 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDEDL--EA----LA--DGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSKD 137 (209)
T ss_dssp GCSEEEEEEECCCSSSHH--HH----HH--HTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSCH
T ss_pred cCCEEEEeCCCCcCcHHH--HH----HH--HHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccchH
Confidence 899999999998 54211 11 11 134788888877322 222222222221 233 579999998764 22
Q ss_pred -cceeeeeeccCCce
Q 012680 226 -GAALSVKEVSGKPI 239 (458)
Q Consensus 226 -g~~~~i~~~~g~pI 239 (458)
..+....+.+|.|+
T Consensus 138 ~~~~~~~l~~~g~~v 152 (209)
T 3cwq_A 138 GDEARQLLTTAGLPL 152 (209)
T ss_dssp HHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHcCCch
Confidence 22223333366665
No 43
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.46 E-value=1e-13 Score=130.09 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=95.7
Q ss_pred EEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCch---------hhhHHhhhccc----ccc--ceecCCCcc
Q 012680 72 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA---------AIDQLVILGEQ----VGV--PVYTAGTEV 135 (458)
Q Consensus 72 iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~---------a~~~l~~~~~~----~gv--~v~~~~~~~ 135 (458)
+|+++ +++|+||||+|.+||.+|+++|+||+++|.....+. ....+...... .+. ..+......
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTSP 82 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEESSCSCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEeCCCCCH
Confidence 55565 679999999999999999999999999864222111 01111111110 011 111111000
Q ss_pred ----------ChHHHHHhhHHHHHhcCCcEEEEeCCcccccc--H-HHHHHHHHHHhhcCcceEEEEEeccch--hhHhH
Q 012680 136 ----------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID--K-AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAA 200 (458)
Q Consensus 136 ----------~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d--~-~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~ 200 (458)
.....+.+.++.+. .+||+|||||||.+... . ..... +..... +++++|+.+... .++..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~---l~~~~~-~~vi~v~~~~~~~~~~~~~ 157 (224)
T 1byi_A 83 HIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFAD---WVTQEQ-LPVILVVGVKLGCINHAML 157 (224)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHH---HHHHHT-CCEEEEEECSTTHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHH---HHHHhC-CCEEEEecCCCCcHHHHHH
Confidence 11234455666654 68999999999877521 0 11111 222121 468888877322 23333
Q ss_pred hhhhh-eeeeeeceeeeecccCCCCC--cceeeeeeccCCceeEeecCCccc
Q 012680 201 LVTTF-NIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPIKLVGRGERME 249 (458)
Q Consensus 201 ~~~~~-~~~~~i~GvIlnk~D~~~~~--g~~~~i~~~~g~pI~fig~g~~v~ 249 (458)
.+..+ +..+.+.|+|+|+++..... .....+.+.++.|+ ++..|...
T Consensus 158 ~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~v--l~~Ip~~~ 207 (224)
T 1byi_A 158 TAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPL--LGEIPWLA 207 (224)
T ss_dssp HHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCE--EEEECCCT
T ss_pred HHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCE--EEECCCCc
Confidence 33332 34677899999999865322 23344555678887 56665554
No 44
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.45 E-value=3.5e-13 Score=134.61 Aligned_cols=40 Identities=35% Similarity=0.600 Sum_probs=37.0
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.++++++|+||+||||+|++||.+++++|++|++||+|+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4677777999999999999999999999999999999993
No 45
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.44 E-value=8.4e-13 Score=134.38 Aligned_cols=175 Identities=17% Similarity=0.142 Sum_probs=99.1
Q ss_pred eccCCCeEEEee-ccccccchhHhhHHHHHHHhcCCceEEeeccccCc-----------hhhhHHhh-------------
Q 012680 65 FAKSRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-----------AAIDQLVI------------- 119 (458)
Q Consensus 65 ~~~~~p~iI~i~-G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp-----------~a~~~l~~------------- 119 (458)
....++++|+++ |+||+||||+|.+||.+|+++|++|++||+|.+.. ...+.+..
T Consensus 138 ~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~ 217 (373)
T 3fkq_A 138 GENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLE 217 (373)
T ss_dssp CCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHH
T ss_pred ccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHH
Confidence 334567888887 68999999999999999999999999999993221 01111110
Q ss_pred -h--ccccccceecCCCccC-----hHHHHHhhHHHHH-hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEE
Q 012680 120 -L--GEQVGVPVYTAGTEVK-----PSQIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 190 (458)
Q Consensus 120 -~--~~~~gv~v~~~~~~~~-----~~~i~~~~l~~~~-~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVv 190 (458)
. ....|+.+++.+.... ....+...+..+. +..||+||||||+....+. ..+ ...+|.+++|+
T Consensus 218 ~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~~------~~~--l~~aD~vivv~ 289 (373)
T 3fkq_A 218 SCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEK------LKL--LSKAWRIIVVN 289 (373)
T ss_dssp HTCEECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHHH------HHH--HTTCSEEEEEE
T ss_pred HHhhcCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHHH------HHH--HHHCCEEEEEe
Confidence 0 1124666665443211 1122334444443 3589999999998764211 111 12358888888
Q ss_pred eccc-h----hhHhHhhhhheeeeeeceeeeecccCCCCC-cceeeeeeccCCceeEeecCCcccc
Q 012680 191 DAMT-G----QEAAALVTTFNIEIGITGAILTKLDGDSRG-GAALSVKEVSGKPIKLVGRGERMED 250 (458)
Q Consensus 191 da~~-g----~~~~~~~~~~~~~~~i~GvIlnk~D~~~~~-g~~~~i~~~~g~pI~fig~g~~v~d 250 (458)
.+.. + .++.+.++.+....+ .++|.|+.+...+. ..+.......++|+ +|..|....
T Consensus 290 ~~~~~s~~~l~~~~~~l~~l~~~~~-~~vv~N~~~v~~~~~~~~~~fl~~~~l~~--lG~IP~D~~ 352 (373)
T 3fkq_A 290 DGSQLSNYKFMRAYESVVLLEQNDD-INIIRNMNMIYNKFSNKNSEMLSNISIKT--IGGAPRYEH 352 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSTT-CCCGGGEEEEECSCCTTTCCCCCSCSCEE--EEECCCCTT
T ss_pred cCCchHHHHHHHHHHHHHHhcccCC-cEEEehhHHHHHHHHHHHHHHhhcCCccc--eeecCCCCC
Confidence 7732 2 444444444443322 45666665432222 22222332334444 888765443
No 46
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.42 E-value=8.8e-14 Score=142.96 Aligned_cols=163 Identities=17% Similarity=0.227 Sum_probs=83.5
Q ss_pred CCCeEEEee-ccccccchhHhhHHHHHHH------hcCCceEEeeccccCchhh----------------hHHhh-----
Q 012680 68 SRPTVILLA-GLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAAI----------------DQLVI----- 119 (458)
Q Consensus 68 ~~p~iI~i~-G~~GsGKTT~a~~LA~~L~------~~G~kVllVd~D~~rp~a~----------------~~l~~----- 119 (458)
.++++|+++ |+||+||||++++||.+|+ +.|++|++||+|++..... +.+..
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 188 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIGSILETAAQAMLNNLDAE 188 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----------CCHHHHHHHTCCHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCcccCcccccHHHHHHhccccc
Confidence 356777776 8999999999999999999 6899999999998653210 00000
Q ss_pred --------hccccccceecCCCccC-----hHH--------------HHHhhHHHHHhcCCcEEEEeCCccccccHHHHH
Q 012680 120 --------LGEQVGVPVYTAGTEVK-----PSQ--------------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMD 172 (458)
Q Consensus 120 --------~~~~~gv~v~~~~~~~~-----~~~--------------i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~ 172 (458)
.....|+.+++.+.... ... +.+..+..+ +.+||+|||||||.+.. ....
T Consensus 189 ~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~yD~VIID~pP~~~~--~~~~ 265 (403)
T 3ez9_A 189 TLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRV-ADDYDFIFIDTGPHLDP--FLLN 265 (403)
T ss_dssp HHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGS-GGGCSEEEEEECSSCSH--HHHH
T ss_pred ccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHH-hhcCCEEEEECCCCccH--HHHH
Confidence 01124566666543310 000 112233333 36799999999998752 1111
Q ss_pred HHHHHHhhcCcceEEEEEeccch---------hh---HhHhhhhheeeeeecee--eeecccCCCCC-cceeeeeeccCC
Q 012680 173 ELKDVKRVLNPTEVLLVVDAMTG---------QE---AAALVTTFNIEIGITGA--ILTKLDGDSRG-GAALSVKEVSGK 237 (458)
Q Consensus 173 el~~l~~~~~~~~vllVvda~~g---------~~---~~~~~~~~~~~~~i~Gv--Ilnk~D~~~~~-g~~~~i~~~~g~ 237 (458)
.+ . .+|.+++|+.+... .. ..+.+..+....++.|+ ++|+++..... .....+.+.+|.
T Consensus 266 al---~---~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~~~~~~~~~~~~~~g~ 339 (403)
T 3ez9_A 266 GL---A---ASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKRDHETSHSLAREVYAS 339 (403)
T ss_dssp HH---H---HCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CHHHHHHHHHHHHHHTT
T ss_pred HH---H---HCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCchhHHHHHHHHHHHhhH
Confidence 11 1 24888888876211 11 22222333445566554 56777633111 222344556787
Q ss_pred ce
Q 012680 238 PI 239 (458)
Q Consensus 238 pI 239 (458)
++
T Consensus 340 ~v 341 (403)
T 3ez9_A 340 NI 341 (403)
T ss_dssp SE
T ss_pred hh
Confidence 77
No 47
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.42 E-value=1.3e-12 Score=130.93 Aligned_cols=41 Identities=37% Similarity=0.430 Sum_probs=38.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
..++++++|+||+||||++++||.+|+++|+||++||+|++
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35677788999999999999999999999999999999987
No 48
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.41 E-value=9.2e-13 Score=132.21 Aligned_cols=42 Identities=38% Similarity=0.438 Sum_probs=38.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.+++++++|+||+||||+|++||.+|++.|++|++||+|+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 467888889999999999999999999999999999999754
No 49
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.41 E-value=1e-12 Score=132.93 Aligned_cols=40 Identities=33% Similarity=0.441 Sum_probs=37.0
Q ss_pred CeEEEeeccccccchhHhhHHHHHHH--hcCCceEEeecccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVY 109 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~--~~G~kVllVd~D~~ 109 (458)
.++++++|+||+||||++++||..|+ +.|+||++||+|+.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 46777779999999999999999999 89999999999994
No 50
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.41 E-value=7e-13 Score=135.95 Aligned_cols=162 Identities=19% Similarity=0.230 Sum_probs=92.8
Q ss_pred CCeEEEee-ccccccchhHhhHHHHHHH------hcCCceEEeeccccCchhh----------------hHHh-------
Q 012680 69 RPTVILLA-GLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAAI----------------DQLV------- 118 (458)
Q Consensus 69 ~p~iI~i~-G~~GsGKTT~a~~LA~~L~------~~G~kVllVd~D~~rp~a~----------------~~l~------- 118 (458)
.+++|+++ ++||+||||+|++||.+|+ ++|++|++||+|++.+... +.+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSREE 186 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCHHHHSSCCSCHHHHHHHCCCHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCccccccccccHHHHHHhhccccc
Confidence 46777776 8999999999999999999 4799999999999653210 0000
Q ss_pred ------hhccccccceecCCCccC-----hH--------------HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHH
Q 012680 119 ------ILGEQVGVPVYTAGTEVK-----PS--------------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDE 173 (458)
Q Consensus 119 ------~~~~~~gv~v~~~~~~~~-----~~--------------~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~e 173 (458)
......|+.+++.+.... .. ..++..+..+. .+||+|||||||.+... ....
T Consensus 187 ~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~--~~~~ 263 (398)
T 3ez2_A 187 LLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAF--LKNA 263 (398)
T ss_dssp HHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHH--HHHH
T ss_pred cHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHH--HHHH
Confidence 001124566666543310 00 12234555544 68999999999987521 1111
Q ss_pred HHHHHhhcCcceEEEEEeccch---------h---hHhHhhhhheeeeeeceeee--ecccCCC-CCcceeeeeeccCCc
Q 012680 174 LKDVKRVLNPTEVLLVVDAMTG---------Q---EAAALVTTFNIEIGITGAIL--TKLDGDS-RGGAALSVKEVSGKP 238 (458)
Q Consensus 174 l~~l~~~~~~~~vllVvda~~g---------~---~~~~~~~~~~~~~~i~GvIl--nk~D~~~-~~g~~~~i~~~~g~p 238 (458)
+ . .+|.+++|+.+... . ...+.+..+.....+.|+|. |+.+... .......+.+.+|.+
T Consensus 264 l---~---~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~~~~~~~~~l~~~~g~~ 337 (398)
T 3ez2_A 264 L---A---SANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVFGGD 337 (398)
T ss_dssp H---H---HCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCHHHHHHHHHHHHHHGGG
T ss_pred H---H---HCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCchhHHHHHHHHHHHhccc
Confidence 1 1 24888888876211 1 12222333444666667654 4443221 112233444556666
Q ss_pred e
Q 012680 239 I 239 (458)
Q Consensus 239 I 239 (458)
+
T Consensus 338 v 338 (398)
T 3ez2_A 338 M 338 (398)
T ss_dssp B
T ss_pred c
Confidence 5
No 51
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.36 E-value=2e-12 Score=130.82 Aligned_cols=143 Identities=20% Similarity=0.238 Sum_probs=86.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhh-------HHhhhccccccceecCCCccCh---H
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-------QLVILGEQVGVPVYTAGTEVKP---S 138 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~-------~l~~~~~~~gv~v~~~~~~~~~---~ 138 (458)
++.+|+++|++|+||||++.+|+..++..|++|+++++|+..+.... ....+....++.+...+..... .
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 56789999999999999999999999999999999999987764211 1112222234554443322111 2
Q ss_pred HHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeeec
Q 012680 139 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK 218 (458)
Q Consensus 139 ~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlnk 218 (458)
...++.+..+...++|++||||||....... + .-.+|.+++|+|+..+........... .. ...+|+||
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~-------~--~~~aD~vl~V~d~~~~~~~~~l~~~~~-~~-p~ivVlNK 226 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEVA-------V--ANMVDTFVLLTLARTGDQLQGIKKGVL-EL-ADIVVVNK 226 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHHH-------H--HTTCSEEEEEEESSTTCTTTTCCTTSG-GG-CSEEEEEC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHHH-------H--HHhCCEEEEEECCCCCccHHHHHHhHh-hc-CCEEEEEC
Confidence 2334555555567899999999996542111 1 123588999999865543321111111 11 23589999
Q ss_pred ccCC
Q 012680 219 LDGD 222 (458)
Q Consensus 219 ~D~~ 222 (458)
+|..
T Consensus 227 ~Dl~ 230 (355)
T 3p32_A 227 ADGE 230 (355)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 9975
No 52
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.33 E-value=2.3e-12 Score=123.64 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=80.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchh-------------hhHHhhhccccccceecC-CCc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------IDQLVILGEQVGVPVYTA-GTE 134 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a-------------~~~l~~~~~~~gv~v~~~-~~~ 134 (458)
++.+++++|++||||||++.+||.+++ .|++|++||+|++.... .+.........+..+++. ...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 467888889999999999999999999 99999999999975432 000000000000000100 000
Q ss_pred cChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhh------h--hhe
Q 012680 135 VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV------T--TFN 206 (458)
Q Consensus 135 ~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~------~--~~~ 206 (458)
......+.+.+..+. .+||++||||||...... .......+...+..+-+++|+|+....+..... . ...
T Consensus 92 ~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~-~~~l~~~~~~~~~~~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 169 (262)
T 1yrb_A 92 MEKFNEYLNKILRLE-KENDYVLIDTPGQMETFL-FHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR 169 (262)
T ss_dssp HTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHH-HSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhh-hhhhHHHHHHHHhhceEEeccchhhhcCHHHHHHHHHHHHHHhcc
Confidence 011233444555543 469999999999864211 000011122222225667788875432221111 0 111
Q ss_pred eeeeeceeeeecccC
Q 012680 207 IEIGITGAILTKLDG 221 (458)
Q Consensus 207 ~~~~i~GvIlnk~D~ 221 (458)
...++ .+|+||+|.
T Consensus 170 ~~~p~-~iv~NK~D~ 183 (262)
T 1yrb_A 170 LGATT-IPALNKVDL 183 (262)
T ss_dssp HTSCE-EEEECCGGG
T ss_pred cCCCe-EEEEecccc
Confidence 12333 388999985
No 53
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.30 E-value=4.3e-12 Score=136.62 Aligned_cols=42 Identities=38% Similarity=0.554 Sum_probs=39.3
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
+.+++++++|+||+||||++++||.+++++|+||++||+|+.
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~ 47 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 457899999999999999999999999999999999999984
No 54
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.29 E-value=5.6e-12 Score=127.13 Aligned_cols=41 Identities=32% Similarity=0.422 Sum_probs=38.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH--hcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~--~~G~kVllVd~D~~ 109 (458)
..++++++|+||+||||+|++||.+++ +.|++|++||+|+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 457999999999999999999999999 89999999999964
No 55
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.27 E-value=6.2e-12 Score=126.49 Aligned_cols=236 Identities=17% Similarity=0.197 Sum_probs=115.7
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHh-------hhccccccceecCCCc--c-Ch
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-------ILGEQVGVPVYTAGTE--V-KP 137 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~-------~~~~~~gv~v~~~~~~--~-~~ 137 (458)
.+..+++++|++|+||||++.+|+..+...|.+|.+++.|++.+.....+. .+....+..+.+.... . ..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 356789999999999999999999999999999999999998754211110 0000111111111110 0 01
Q ss_pred HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeee
Q 012680 138 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 217 (458)
Q Consensus 138 ~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIln 217 (458)
.....+.+..+.+.+|+++||||||....... + ...+|.+++|+|+..+... ...+......+ ..+|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~-------~--~~~aD~vl~Vvd~~~~~~~-~~l~~~~~~~p-~ivv~N 202 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETE-------V--ARMVDCFISLQIAGGGDDL-QGIKKGLMEVA-DLIVIN 202 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH-------H--HTTCSEEEEEECC-------CCCCHHHHHHC-SEEEEC
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHH-------H--HHhCCEEEEEEeCCccHHH-HHHHHhhhccc-CEEEEE
Confidence 11122333344457899999999997642211 1 1245889999998655321 11111000111 348999
Q ss_pred cccCCCCCcce---eeeee---c-------cCCceeEee--cCCccccCCCCCcchhhhhhhcccchhH-HHHHHHHHHh
Q 012680 218 KLDGDSRGGAA---LSVKE---V-------SGKPIKLVG--RGERMEDLEPFYPDRMAGRILGMGDVLS-FVEKAQEVMQ 281 (458)
Q Consensus 218 k~D~~~~~g~~---~~i~~---~-------~g~pI~fig--~g~~v~dl~~f~p~~~~sr~lG~~dv~~-l~e~~~e~~~ 281 (458)
|+|........ ..+.+ . +..|+.+++ .++.++++...-.... ...-..+.+.. ..+.+.+.+.
T Consensus 203 K~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~-~~~~~~~~~~~~r~~~~~~~~~ 281 (341)
T 2p67_A 203 KDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK-TALTASGRLQQVRQQQSVEWLR 281 (341)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH-HHHHhCChHHHHHHHHHHHHHH
Confidence 99975321110 11111 0 123454444 4444444321101000 00000011111 1112222222
Q ss_pred HHhHHHHHHHHhhcccChhHHHHHHHHHHhhccch
Q 012680 282 QEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMS 316 (458)
Q Consensus 282 e~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~~~ 316 (458)
+.-.+.+++++.++ ++.++++..++.....|.+.
T Consensus 282 e~i~e~l~~~~~~~-~~~~~~~~~l~~~v~~~~~~ 315 (341)
T 2p67_A 282 KQTEEEVLNHLFAN-EDFDRYYRQTLLAVKNNTLS 315 (341)
T ss_dssp HHHHHHHHHHHHHC-HHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhC-cchhHHHHHHHHHHHhCCCC
Confidence 33344556666664 78888888888877777543
No 56
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.26 E-value=2.6e-11 Score=123.22 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=36.2
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
+++++++|+||+||||++++||.++++.|++|++||+ +.
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~ 40 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AE 40 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CC
Confidence 4688899999999999999999999999999999999 54
No 57
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.23 E-value=1.1e-11 Score=119.36 Aligned_cols=174 Identities=17% Similarity=0.197 Sum_probs=99.1
Q ss_pred CCCeEEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccC--chhhhHHhhhccccccc----eecCCCccC----
Q 012680 68 SRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVP----VYTAGTEVK---- 136 (458)
Q Consensus 68 ~~p~iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r--p~a~~~l~~~~~~~gv~----v~~~~~~~~---- 136 (458)
...+.++|+|. +|+||||+++.|+.+|+++|++|.+...=... +...|. ..+....+++ .+....+..
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~-~~~~~~~g~~~~~~~~~~~~p~sP~~a 102 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDL-AEVGRLAGVTQLAGLARYPQPMAPAAA 102 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHH-HHHHHHHCCCEEEEEEECSSSSCHHHH
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHH-HHHHHHcCCCCCCCCeeECCCCChHHH
Confidence 34578888887 89999999999999999999999977610000 111111 1111111221 111111111
Q ss_pred ---------hHHHHHhhHHHHHhcCCcEEEEeCCccccc--cH--HHHHHHHHHHhhcCcceEEEEEeccch--hhHhHh
Q 012680 137 ---------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DK--AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL 201 (458)
Q Consensus 137 ---------~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~--d~--~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~ 201 (458)
..+.+.+.+..+ ...||+||||++|.+.. +. ....+ +...+. .++++|+++..+ ..+...
T Consensus 103 a~~~~~~~~~~~~i~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~~ad---la~~l~-~pVILV~~~~~g~i~~~~lt 177 (251)
T 3fgn_A 103 AEHAGMALPARDQIVRLIADL-DRPGRLTLVEGAGGLLVELAEPGVTLRD---VAVDVA-AAALVVVTADLGTLNHTKLT 177 (251)
T ss_dssp HHHTTCCCCCHHHHHHHHHTT-CCTTCEEEEECSSSTTCEEETTTEEHHH---HHHHTT-CEEEEEECSSTTHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHH-HhcCCEEEEECCCCCcCCcCcccchHHH---HHHHcC-CCEEEEEcCCCccHHHHHHH
Confidence 112334444443 36899999999987742 11 12222 333343 889999998543 223222
Q ss_pred hhhh-eeeeeeceeeeecccCCCC--CcceeeeeeccCCceeEeecCCcccc
Q 012680 202 VTTF-NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMED 250 (458)
Q Consensus 202 ~~~~-~~~~~i~GvIlnk~D~~~~--~g~~~~i~~~~g~pI~fig~g~~v~d 250 (458)
...+ ..++.+.|+|+|++.++.. ........+.. +|+ +|..|+.++
T Consensus 178 ~~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpv--LG~iP~~~~ 226 (251)
T 3fgn_A 178 LEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMV--RAALPAGAA 226 (251)
T ss_dssp HHHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCE--EEEEETTGG
T ss_pred HHHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCE--EEEeeCCCC
Confidence 2222 4578899999999964321 11122333344 787 888877654
No 58
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.23 E-value=1.2e-11 Score=117.48 Aligned_cols=170 Identities=19% Similarity=0.252 Sum_probs=98.8
Q ss_pred CCeEEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCchh-------hhHHhhhcc------ccccceecCCCc
Q 012680 69 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------IDQLVILGE------QVGVPVYTAGTE 134 (458)
Q Consensus 69 ~p~iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a-------~~~l~~~~~------~~gv~v~~~~~~ 134 (458)
+.+.++|+|. +|+||||+++.|+.+|+++|++|.+...=...+.. .+.+..... ..+...+.. +
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~--p 80 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESILNAYKHKFTAAEINLISFNQ--A 80 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHHHHTTTSSCHHHHCSEEESS--S
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHHHhcCCCCChhhEEEEEECC--C
Confidence 3467888887 99999999999999999999999976510001111 121111110 011111111 1
Q ss_pred cCh------------HHHHHhhHHHHHhcCCcEEEEeCCccccc---cHHHHHHHHHHHhhcCcceEEEEEeccch--hh
Q 012680 135 VKP------------SQIAKQGLEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE 197 (458)
Q Consensus 135 ~~~------------~~i~~~~l~~~~~~~~DvVIIDtpg~l~~---d~~l~~el~~l~~~~~~~~vllVvda~~g--~~ 197 (458)
..| .+.+.+.+......+||+||||+||.+.. +..... ++...+. .++++|+++..+ .+
T Consensus 81 ~sp~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~a---dla~~l~-~pviLV~~~~~~~i~~ 156 (228)
T 3of5_A 81 VAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQL---DLIKALQ-IPVLLVSAIKVGCINH 156 (228)
T ss_dssp SCHHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHH---HHHHHHT-CCEEEEEECSTTHHHH
T ss_pred CCHHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchhHH---HHHHHcC-CCEEEEEcCCcchHHH
Confidence 111 12234444441236899999999987643 111222 2333333 789999998543 23
Q ss_pred HhHhhhh-heeeeeeceeeeecccCCC-CC-cceeeeeeccCCceeEeecCC
Q 012680 198 AAALVTT-FNIEIGITGAILTKLDGDS-RG-GAALSVKEVSGKPIKLVGRGE 246 (458)
Q Consensus 198 ~~~~~~~-~~~~~~i~GvIlnk~D~~~-~~-g~~~~i~~~~g~pI~fig~g~ 246 (458)
+...... ...++.+.|+|+|+++.+. +. .....+.+.+|.|+ +|..|
T Consensus 157 ~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pv--LG~iP 206 (228)
T 3of5_A 157 TLLTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKC--SAKIS 206 (228)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCC--SEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCE--EEECC
Confidence 3222222 2457788999999998763 22 23444556689999 88877
No 59
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.06 E-value=8.9e-11 Score=126.34 Aligned_cols=42 Identities=36% Similarity=0.426 Sum_probs=37.0
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
..+++++|++|+||||++++||..++++|++|+++|+|++.+
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~ 368 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAH 368 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC--
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCccc
Confidence 456777799999999999999999999999999999998743
No 60
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.01 E-value=1.3e-09 Score=104.26 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=86.8
Q ss_pred CCeEEEeecc-ccccchhHhhHHHHHHHhcCCceEEee-----ccccCchhhhHHhh---hcccc-ccce-----ecCCC
Q 012680 69 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA-----GDVYRPAAIDQLVI---LGEQV-GVPV-----YTAGT 133 (458)
Q Consensus 69 ~p~iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd-----~D~~rp~a~~~l~~---~~~~~-gv~v-----~~~~~ 133 (458)
..+.++|+|. +|+|||++++.|+.+|+++|++|.+.. ++.......|.... ..... +++. +....
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~ 99 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHK 99 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSS
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECC
Confidence 4578888887 999999999999999999999999876 22110011111110 01111 2221 11111
Q ss_pred ccC--------------hHHHHHhhHHHHHhcCCcEEEEeCCccccc---cHHHHHHHHHHHhhcCcceEEEEEeccch-
Q 012680 134 EVK--------------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG- 195 (458)
Q Consensus 134 ~~~--------------~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~---d~~l~~el~~l~~~~~~~~vllVvda~~g- 195 (458)
+.. ..+.+.+.+..+. ..||+||||++|.+.. +.....+ +...+. .++++|+++..+
T Consensus 100 p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~ad---lA~~l~-~pVILV~~~~lg~ 174 (242)
T 3qxc_A 100 VSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLD---FALKLK-AKMLLISHDNLGL 174 (242)
T ss_dssp SSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHH---HHHHHT-CEEEEEECCSTTH
T ss_pred CCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHH---HHHHcC-CCEEEEEcCCCcH
Confidence 111 1223445555543 6899999999988753 1112223 333333 789999998544
Q ss_pred -hhHhHhhhhh-eeeeeeceeeeecccCC
Q 012680 196 -QEAAALVTTF-NIEIGITGAILTKLDGD 222 (458)
Q Consensus 196 -~~~~~~~~~~-~~~~~i~GvIlnk~D~~ 222 (458)
..+......+ ..++. .|+|+|+++.+
T Consensus 175 i~~~~lt~~~l~~~g~~-~GvIlN~v~~~ 202 (242)
T 3qxc_A 175 INDCLLNDFLLKSHQLD-YKIAINLKGNN 202 (242)
T ss_dssp HHHHHHHHHHHHTSSSC-EEEEECCCTTC
T ss_pred HHHHHHHHHHHHhCCCC-EEEEEeCCCCc
Confidence 2222223333 45778 99999999865
No 61
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.85 E-value=1e-08 Score=95.42 Aligned_cols=135 Identities=15% Similarity=0.213 Sum_probs=79.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCC---ccChHHHHHhhH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---EVKPSQIAKQGL 145 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~---~~~~~~i~~~~l 145 (458)
...+++++|.+||||||++.+|+..+... +++.+++.|+..+.....+. ..+..+...+. .........+.+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVR----RFGIKAEAISTGKECHLDAHMIYHRL 103 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHH----TTTCEEEECCCTTCSSCCHHHHHTTG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHH----hCCCcEEEecCCceeecccHHHHHHH
Confidence 45689999999999999999999888655 88999999987542222221 12333222111 111122333333
Q ss_pred HHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeee-ceeeeecccCC
Q 012680 146 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGD 222 (458)
Q Consensus 146 ~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlnk~D~~ 222 (458)
. ...++|++||||+|.+..... + ...++.+++|+|+..+..... .+....+. .-+|+||+|..
T Consensus 104 ~--~~~~~d~iiidt~G~~~~~~~-------~--~~~~~~~i~vvd~~~~~~~~~---~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 104 K--KFSDCDLLLIENVGNLICPVD-------F--DLGENYRVVMVSVTEGDDVVE---KHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp G--GGTTCSEEEEEEEEBSSGGGG-------C--CCSCSEEEEEEEGGGCTTHHH---HCHHHHHTCSEEEEECGGGH
T ss_pred H--hcCCCCEEEEeCCCCCCCCch-------h--ccccCcEEEEEeCCCcchhhh---hhhhhhhcCCEEEEecccCC
Confidence 3 346799999999995321110 0 023467899999866532211 11111111 34899999963
No 62
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.81 E-value=9.3e-09 Score=103.61 Aligned_cols=142 Identities=18% Similarity=0.212 Sum_probs=74.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhh-------hHHhhhccccccceecCC--Ccc--Ch
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------DQLVILGEQVGVPVYTAG--TEV--KP 137 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~-------~~l~~~~~~~gv~v~~~~--~~~--~~ 137 (458)
...++.++|.+|+||||+...|+..+...+.+|.++..|++.+... ..+..++......+...+ +.. ..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3568999999999999999999999988899999999998875321 111111111122221111 000 01
Q ss_pred HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeee
Q 012680 138 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 217 (458)
Q Consensus 138 ~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIln 217 (458)
.. ..+.+..+...++|++|+||||....+. . +. -..+.+++|+|+..+.+......... .. ..-+|+|
T Consensus 153 r~-~~~~~~~~~~~~~~~iliDT~Gi~~~~~----~---l~--~~~d~vl~V~d~~~~~~~~~i~~~il-~~-~~ivVlN 220 (349)
T 2www_A 153 RT-TNEAILLCEGAGYDIILIETVGVGQSEF----A---VA--DMVDMFVLLLPPAGGDELQGIKRGII-EM-ADLVAVT 220 (349)
T ss_dssp TT-HHHHHHHHHHTTCSEEEEECCCC--CHH----H---HH--TTCSEEEEEECCC------------C-CS-CSEEEEC
T ss_pred HH-HHHHHHhhccCCCCEEEEECCCcchhhh----h---HH--hhCCEEEEEEcCCcchhHHHhHHHHH-hc-CCEEEEe
Confidence 11 1222333334789999999999653221 1 11 13578899999865532211111111 11 1347889
Q ss_pred cccCC
Q 012680 218 KLDGD 222 (458)
Q Consensus 218 k~D~~ 222 (458)
|+|..
T Consensus 221 K~Dl~ 225 (349)
T 2www_A 221 KSDGD 225 (349)
T ss_dssp CCSGG
T ss_pred eecCC
Confidence 99974
No 63
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.75 E-value=7.5e-10 Score=118.07 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=83.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH---hcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 145 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~---~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l 145 (458)
+.|.|+|+|+.++||||++.+|.++-. +.|. +-+.+..+....|.. ......|+.+......
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~---V~~~~~~~~~~~D~~-~~EreRGITI~s~~~~----------- 94 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGS---VKARKAARHATSDWM-AMERERGISVTTSVMQ----------- 94 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHH---HHHC---------------------CTTTEEE-----------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccce---eecCccccccccCCh-HHHHHCCCcEeeceEE-----------
Confidence 468999999999999999999976532 1110 000010011111111 1234456555433211
Q ss_pred HHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeeec-eeeeecccCCC
Q 012680 146 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGIT-GAILTKLDGDS 223 (458)
Q Consensus 146 ~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~-GvIlnk~D~~~ 223 (458)
+.|++|.+.||||||...+..+....|.. .|.+++|||+..| +.....++......++. -+++||+|...
T Consensus 95 --~~~~~~~iNlIDTPGHvDF~~Ev~raL~~------~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 95 --FPYRDRVVNLLDTPGHQDFSEDTYRVLTA------VDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp --EEETTEEEEEECCCCGGGCSHHHHHHHHS------CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred --EEECCEEEEEEeCCCcHHHHHHHHHHHHh------cCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh
Confidence 23578999999999998776655555433 3999999999766 44455556555544553 37999999763
Q ss_pred CC--cceeeeeeccCCce
Q 012680 224 RG--GAALSVKEVSGKPI 239 (458)
Q Consensus 224 ~~--g~~~~i~~~~g~pI 239 (458)
.. ..+..+.+.++..+
T Consensus 167 ad~~~~~~~i~~~l~~~~ 184 (548)
T 3vqt_A 167 LHPLDVMADIEQHLQIEC 184 (548)
T ss_dssp CCHHHHHHHHHHHHTSEE
T ss_pred cchhHhhhhhhhhcCCce
Confidence 32 34455666666544
No 64
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.75 E-value=1.6e-08 Score=95.32 Aligned_cols=90 Identities=21% Similarity=0.171 Sum_probs=56.7
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecC-CCccChHHHHHhhHHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~-~~~~~~~~i~~~~l~~~~ 149 (458)
-.|++.|+||+||||++.++|..++++|++|++++.|++.......+..-.......++.. +......+ +..+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~-----l~~~L 81 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMD-----LDALL 81 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECC-----HHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCccccccc-----HHHHH
Confidence 4577789999999999999999999999999999999986554433321111110001111 11100000 11111
Q ss_pred hcCCcEEEEeCCcccc
Q 012680 150 KKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~ 165 (458)
...+|++|||++|..+
T Consensus 82 ~~~pdlvIVDElG~~~ 97 (228)
T 2r8r_A 82 KAAPSLVLVDELAHTN 97 (228)
T ss_dssp HHCCSEEEESCTTCBC
T ss_pred hcCCCEEEEeCCCCCC
Confidence 2479999999998754
No 65
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.74 E-value=2.3e-08 Score=100.25 Aligned_cols=143 Identities=19% Similarity=0.210 Sum_probs=79.7
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchh---h----hHHhhhccccccceecCCCccC---h
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---I----DQLVILGEQVGVPVYTAGTEVK---P 137 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a---~----~~l~~~~~~~gv~v~~~~~~~~---~ 137 (458)
.+..++.++|++|+||||+...|+..+...+.+|.++..|+..... + ..+..+....++.+.+...... .
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 3567999999999999999999999988888999999999864321 0 0111111111222211111111 1
Q ss_pred HHHHHhhHHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeeeceeeee
Q 012680 138 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 217 (458)
Q Consensus 138 ~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIln 217 (458)
.....+.+..+...++|++||||||....+..+ . -..+-+++|+|+..+.+. .......... ..-+++|
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v-------~--~~~d~vl~v~d~~~~~~~-~~i~~~i~~~-~~ivvlN 201 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSETAV-------A--DLTDFFLVLMLPGAGDEL-QGIKKGIFEL-ADMIAVN 201 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH-------H--TTSSEEEEEECSCC-------CCTTHHHH-CSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH-------H--hhCCEEEEEEcCCCcccH-HHHHHHHhcc-ccEEEEE
Confidence 112233333344578999999999986532111 1 134777888887544321 1111000011 1346779
Q ss_pred cccC
Q 012680 218 KLDG 221 (458)
Q Consensus 218 k~D~ 221 (458)
|+|.
T Consensus 202 K~Dl 205 (337)
T 2qm8_A 202 KADD 205 (337)
T ss_dssp CCST
T ss_pred chhc
Confidence 9994
No 66
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.69 E-value=1.1e-08 Score=111.02 Aligned_cols=146 Identities=23% Similarity=0.237 Sum_probs=85.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
.|.|.+.|+.++||||++.+|.++-..-...-.+-+.+. ..|.. ......|+.+...... +.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~----~~D~~-~~EreRGITI~s~~~~-------------~~ 63 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTT----RTDNT-LLERQRGITIQTGITS-------------FQ 63 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCC----STTCS-TTHHHHSSCSSCCCCC-------------CB
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCc----ccCCc-HHHHhCCCcEEeeeEE-------------EE
Confidence 467899999999999999999876643211101111111 11111 1223446655443222 13
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeee-ceeeeecccCCCCC--
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGDSRG-- 225 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlnk~D~~~~~-- 225 (458)
|++|.+.||||||...+..+....| ++ .|.+++|||+..| +...+.++......++ .-+++||+|.....
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~raL----~~--~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~ 137 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYRSL----SV--LDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLS 137 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHHHH----TT--CSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSH
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHH----HH--hCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHH
Confidence 4688999999999886544444433 32 4999999999766 3333444444433333 24789999975322
Q ss_pred cceeeeeeccCCce
Q 012680 226 GAALSVKEVSGKPI 239 (458)
Q Consensus 226 g~~~~i~~~~g~pI 239 (458)
....++.+.++.++
T Consensus 138 ~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 138 TVYQDIKEKLSAEI 151 (638)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhCCCc
Confidence 33455666666655
No 67
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.61 E-value=7.5e-08 Score=107.44 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=54.5
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhh-heeeeeeceeeeecccCCCCCcce
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLDGDSRGGAA 228 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~-~~~~~~i~GvIlnk~D~~~~~g~~ 228 (458)
.+|++||+++|.+......-.....+.+.+. .+++||+|+..+ ..++-.... ...++.+.|||+|+.+........
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~-~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~~~~l~ 279 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFR-LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLT 279 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGC-CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCTHHHHH
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchhHHHHHH
Confidence 7999999999876531110011234555555 789999998544 122211111 234788999999987633222111
Q ss_pred eeeeeccCCceeEeecCCcccc
Q 012680 229 LSVKEVSGKPIKLVGRGERMED 250 (458)
Q Consensus 229 ~~i~~~~g~pI~fig~g~~v~d 250 (458)
..+.+ +.|+..+|..|...+
T Consensus 280 ~~l~~--~~~v~vLg~lP~~~~ 299 (831)
T 4a0g_A 280 SYLRN--KVPVLVLPPVPKDPS 299 (831)
T ss_dssp HHTTT--SSCEEEECCCCCCTT
T ss_pred HHHHh--CCCceeeCCCCCCCH
Confidence 22222 455556898887654
No 68
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.60 E-value=1e-07 Score=104.72 Aligned_cols=226 Identities=16% Similarity=0.180 Sum_probs=107.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH---hcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 145 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~---~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l 145 (458)
+-|.|+|+|+.++||||++-.|.++-. +.|. | -+.+. ..|.. ......|+.+...........
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~-v--~~~~~----~~D~~-~~E~eRGITI~s~~~s~~~~~------ 77 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGE-V--HDGAA----TTDWM-VQEQERGITITSAAVTTFWKG------ 77 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECC------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCce-e--cCCCc----cCCCh-HHHHHcCCeEEeeeEEEEecc------
Confidence 358999999999999999999987653 2221 1 11110 11111 122334554433211110000
Q ss_pred HHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhheeeeee-ceeeeecccCCC
Q 012680 146 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGDS 223 (458)
Q Consensus 146 ~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlnk~D~~~ 223 (458)
.....++|-+.||||||...+..+....|. + .|.+++|||+..| +...+.++......++ .-+++||+|...
T Consensus 78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr----~--~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLR----V--LDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp TTSCSCCEEEEEECCCSCTTCHHHHHHHHH----H--CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred CcCCCCCEEEEEEeCCCCcccHHHHHHHHH----H--hCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 000113678999999999876555444443 3 3899999999766 3333444443333333 348999999753
Q ss_pred CC--cceeeeeeccCCcee----EeecCCcccc---CCCCCcchhhhhh--------hcccchhHHHHHHHHHH----hH
Q 012680 224 RG--GAALSVKEVSGKPIK----LVGRGERMED---LEPFYPDRMAGRI--------LGMGDVLSFVEKAQEVM----QQ 282 (458)
Q Consensus 224 ~~--g~~~~i~~~~g~pI~----fig~g~~v~d---l~~f~p~~~~sr~--------lG~~dv~~l~e~~~e~~----~e 282 (458)
.. ..+.++...++..+. .++.++.+.. +..+....+.+.. ....+..+..+.+++.+ .+
T Consensus 152 a~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 231 (709)
T 4fn5_A 152 ANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAE 231 (709)
T ss_dssp CCHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHh
Confidence 22 233344444443322 2343333211 1111110000000 01122333333333333 22
Q ss_pred HhHHHHHHHHhhcccChhHHHHHHHHHHhhcc
Q 012680 283 EDAEEMQKKIMSANFDFNDFLKQTRTVARMGS 314 (458)
Q Consensus 283 ~~~~~~~~k~~~~~~~~edl~~~l~~~~~~g~ 314 (458)
.+...+..++..++++.+++...++.....|.
T Consensus 232 ~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (709)
T 4fn5_A 232 ANEELMNKYLEEGELSEAEIKEGLRLRTLACE 263 (709)
T ss_dssp SSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHhhhhce
Confidence 23334444555668999999888887665554
No 69
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.51 E-value=2e-07 Score=102.15 Aligned_cols=149 Identities=19% Similarity=0.202 Sum_probs=71.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH---hcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 145 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~---~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l 145 (458)
..+.|+++|++|+||||++.+|..... +.| +| |... ...+... .....++.+............
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g-~v-----~~g~-~~~D~~~-~E~~rgiTi~~~~~~~~~~~~----- 75 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIG-EV-----HDGA-ATMDWME-QEQERGITITSAATTAFWSGM----- 75 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCccccc-cc-----CCCc-eeecChh-hHHhcCceeeeceEEEEECCc-----
Confidence 457899999999999999999975421 222 11 1110 0000000 011122222111000000000
Q ss_pred HHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhh-HhHhhhhheeeeee-ceeeeecccCCC
Q 012680 146 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALVTTFNIEIGI-TGAILTKLDGDS 223 (458)
Q Consensus 146 ~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~-~~~~~~~~~~~~~i-~GvIlnk~D~~~ 223 (458)
......+++.||||||...+.......+ . .+|.+++|+|+..+.. .....+......++ .-+|+||+|...
T Consensus 76 -~~~~~~~~i~liDTPG~~df~~~~~~~l----~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 76 -AKQYEPHRINIIDTPGHVDFTIEVERSM----R--VLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred -cccCCceeEEEEeCCCccchHHHHHHHH----H--HCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 0112358999999999864332222222 2 2489999999965521 11222222222222 237899999753
Q ss_pred CC--cceeeeeeccCC
Q 012680 224 RG--GAALSVKEVSGK 237 (458)
Q Consensus 224 ~~--g~~~~i~~~~g~ 237 (458)
.. ..+..+.+.++.
T Consensus 149 ~~~~~~~~~l~~~l~~ 164 (704)
T 2rdo_7 149 ANFLKVVNQIKTRLGA 164 (704)
T ss_pred ccHHHHHHHHHHHhCC
Confidence 22 233334444444
No 70
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.45 E-value=2.5e-07 Score=101.36 Aligned_cols=221 Identities=17% Similarity=0.203 Sum_probs=100.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..+.|+++|++|+||||++.+|...........-+-+.+ ...+. .......++.+..... .+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~----~~~D~-~~~e~~~giTi~~~~~-------------~~ 70 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGA----SQMDW-MEQEQDRGITITSAAT-------------TA 70 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC------------------------------CCSEE-------------EE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCc----eeccc-chhhhhcCceEeeeeE-------------EE
Confidence 457899999999999999999975432111100000000 00010 0001111222111100 01
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhh-HhHhhhhheeeeee-ceeeeecccCCCCC-
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALVTTFNIEIGI-TGAILTKLDGDSRG- 225 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~-~~~~~~~~~~~~~i-~GvIlnk~D~~~~~- 225 (458)
.+.++.+.|+||||...+.......+. .+|.+++|+|+..+.. .....+......++ .-+|+||+|.....
T Consensus 71 ~~~~~~i~liDTPG~~df~~~~~~~l~------~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~ 144 (693)
T 2xex_A 71 AWEGHRVNIIDTPGHVDFTVEVERSLR------VLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANF 144 (693)
T ss_dssp EETTEEEEEECCCCCSSCCHHHHHHHH------HCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCH
T ss_pred EECCeeEEEEECcCCcchHHHHHHHHH------HCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccch
Confidence 124688999999998765443333322 1589999999965421 11112221111222 33789999976432
Q ss_pred -cceeeeeeccCCce----eEeecCCccccCCCCCcc---hhh-h------hhhcccchhHHHHHHHHHH----hHHhHH
Q 012680 226 -GAALSVKEVSGKPI----KLVGRGERMEDLEPFYPD---RMA-G------RILGMGDVLSFVEKAQEVM----QQEDAE 286 (458)
Q Consensus 226 -g~~~~i~~~~g~pI----~fig~g~~v~dl~~f~p~---~~~-s------r~lG~~dv~~l~e~~~e~~----~e~~~~ 286 (458)
..+..+.+.++.+. ..++.+..++.+...-+. .|- + ..--..+..+..+.+++.+ .+++.
T Consensus 145 ~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd- 223 (693)
T 2xex_A 145 EYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSD- 223 (693)
T ss_dssp HHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCH-
Confidence 12233333344321 133333333221111000 000 0 0000112223334444443 33333
Q ss_pred HHHHHHhh-cccChhHHHHHHHHHHhhcc
Q 012680 287 EMQKKIMS-ANFDFNDFLKQTRTVARMGS 314 (458)
Q Consensus 287 ~~~~k~~~-~~~~~edl~~~l~~~~~~g~ 314 (458)
.+++++++ .+++.+++...++.....|.
T Consensus 224 ~l~e~~l~~~~~~~~~~~~~l~~~~~~~~ 252 (693)
T 2xex_A 224 ELMEKYLGDEEISVSELKEAIRQATTNVE 252 (693)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 44555554 48999999999988887764
No 71
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.43 E-value=2.6e-07 Score=101.12 Aligned_cols=222 Identities=18% Similarity=0.149 Sum_probs=100.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..+.|+++|++|+||||++.+|...........- ++ .. ....+.. ......++.+..... .+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~-v~--~~-~~~~d~~-~~E~~~giTi~~~~~-------------~~ 72 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE-VH--EG-AATMDFM-EQERERGITITAAVT-------------TC 72 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC---------------------------------CCEE-------------EE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccce-ec--CC-ceeccCc-hhhhhcccccccceE-------------EE
Confidence 4578999999999999999999754321100000 11 00 0001100 011111221111100 01
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhH-hHhhhhheeeeee-ceeeeecccCCCCC-
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEIGI-TGAILTKLDGDSRG- 225 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~-~~~~~~~~~~~~i-~GvIlnk~D~~~~~- 225 (458)
.+.++.+.||||||...+.......+ . .+|.+++|+|+..+... ....+......++ .-+|+||+|.....
T Consensus 73 ~~~~~~i~liDTPG~~df~~~~~~~l----~--~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~ 146 (691)
T 1dar_A 73 FWKDHRINIIDTPGHVDFTIEVERSM----R--VLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADL 146 (691)
T ss_dssp EETTEEEEEECCCSSTTCHHHHHHHH----H--HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCH
T ss_pred EECCeEEEEEECcCccchHHHHHHHH----H--HCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCH
Confidence 12468999999999865333222222 2 24899999999654211 1112211111222 23789999976332
Q ss_pred -cceeeeeeccCCcee----EeecCCccccCCC-CC--cchhh-h------hhhcccchhHHHHHHHHHH----hHHhHH
Q 012680 226 -GAALSVKEVSGKPIK----LVGRGERMEDLEP-FY--PDRMA-G------RILGMGDVLSFVEKAQEVM----QQEDAE 286 (458)
Q Consensus 226 -g~~~~i~~~~g~pI~----fig~g~~v~dl~~-f~--p~~~~-s------r~lG~~dv~~l~e~~~e~~----~e~~~~ 286 (458)
.....+.+.++.+.. +++.+..+..+.. +. +..+. . ...-..+..+..+.+++.+ .+++.+
T Consensus 147 ~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~ 226 (691)
T 1dar_A 147 WLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDEN 226 (691)
T ss_dssp HHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 222334444443221 2333333222110 00 00000 0 0000112333344444444 334444
Q ss_pred HHHHHHhhcccChhHHHHHHHHHHhhcc
Q 012680 287 EMQKKIMSANFDFNDFLKQTRTVARMGS 314 (458)
Q Consensus 287 ~~~~k~~~~~~~~edl~~~l~~~~~~g~ 314 (458)
.+.+.+...+++.+++...++.....|.
T Consensus 227 l~e~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (691)
T 1dar_A 227 IMLKYLEGEEPTEEELVAAIRKGTIDLK 254 (691)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHhCc
Confidence 4444444558999999999988887763
No 72
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.37 E-value=8.4e-07 Score=82.54 Aligned_cols=136 Identities=19% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecC--CC--ccChHHHHHhh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA--GT--EVKPSQIAKQG 144 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~--~~--~~~~~~i~~~~ 144 (458)
++..|+++|.+||||||++.+|+..+... +++.+++.|+..+...+.+. ..+..++.. +. .....+ ..+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~----~~~~~~~~~~~~~~~~l~~~~-~~~~ 110 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERME----KHGAKVVPLNTGKECHLDAHL-VGHA 110 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHHH----TTTCEEEEEECTTCSSCCHHH-HHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHHH----hcCCcEEEecCCceEeccHHH-HHHH
Confidence 45678888999999999999999887655 78999999976432222221 112222221 11 111111 1333
Q ss_pred HHHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHh-HhhhhheeeeeeceeeeecccCC
Q 012680 145 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 145 l~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~-~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
+..+...++|++++||+|.+..... + . ......+.|+|+..+.... .....+. ...-+|+||+|..
T Consensus 111 ~~~l~~~~~d~~~id~~g~i~~~~s-------~-~-~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 111 LEDLNLDEIDLLFIENVGNLICPAD-------F-D-LGTHKRIVVISTTEGDDTIEKHPGIMK---TADLIVINKIDLA 177 (226)
T ss_dssp HTTSCGGGCSEEEEECCSCSSGGGG-------C-C-CSCSEEEEEEEGGGCTTTTTTCHHHHT---TCSEEEEECGGGH
T ss_pred HHHHhcCCCCEEEEeCCCCccCcch-------h-h-hccCcEEEEEecCcchhhHhhhhhHhh---cCCEEEEeccccC
Confidence 3333335679999999996432111 0 0 1234456777764332111 1111111 1135899999964
No 73
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.28 E-value=3.9e-06 Score=84.60 Aligned_cols=107 Identities=20% Similarity=0.301 Sum_probs=68.0
Q ss_pred HHHhHHHHHHhhc-cceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc-CchhhhHHhhhcc
Q 012680 45 VKIVRDELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGE 122 (458)
Q Consensus 45 ~~~v~~el~~llg-~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~-rp~a~~~l~~~~~ 122 (458)
+..-...|..+++ ++.. +..+++++|++|+||||+|.+++..+++.|.+|++++++.. .+.. ...++.
T Consensus 44 i~TG~~~LD~~Lg~GGl~-------~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~---a~~~g~ 113 (356)
T 1u94_A 44 ISTGSLSLDIALGAGGLP-------MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGV 113 (356)
T ss_dssp ECCSCHHHHHHTSSSSEE-------TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH---HHHTTC
T ss_pred ccCCCHHHHHHhccCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH---HHHcCC
Confidence 4445567888887 4432 46799999999999999999999999999999999998532 1211 111111
Q ss_pred -ccccceecCCCccChHHHHHhhHHHH-HhcCCcEEEEeCCcccc
Q 012680 123 -QVGVPVYTAGTEVKPSQIAKQGLEEA-KKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 123 -~~gv~v~~~~~~~~~~~i~~~~l~~~-~~~~~DvVIIDtpg~l~ 165 (458)
..++.++.. +..+.+.+.+..+ ....+|+||||+...+.
T Consensus 114 ~~~~l~i~~~----~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 114 DIDNLLCSQP----DTGEQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp CGGGCEEECC----SSHHHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred ChhheeeeCC----CCHHHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 112222221 1222233333332 23679999999988765
No 74
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.24 E-value=8.9e-06 Score=76.25 Aligned_cols=52 Identities=27% Similarity=0.338 Sum_probs=42.5
Q ss_pred HHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 51 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 51 el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
+|.+++++... +..+++++|.+|+||||++.+++..+...|.+|++++.+..
T Consensus 11 ~LD~~l~gGl~-------~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 11 GVDEILHGGIP-------ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp THHHHTTTSEE-------TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred hHHHHcCCCCC-------CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 45566654432 46799999999999999999999999888999999998753
No 75
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.23 E-value=8.2e-06 Score=82.55 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=67.9
Q ss_pred HHHhHHHHHHhhc-cceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcc-
Q 012680 45 VKIVRDELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE- 122 (458)
Q Consensus 45 ~~~v~~el~~llg-~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~- 122 (458)
+..-..+|..+++ ++.. +..++.+.|.+|+||||+|.+++..+++.|.+|++++++....... ....+.
T Consensus 55 i~TG~~~LD~~Lg~GGl~-------~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~--a~~~g~d 125 (366)
T 1xp8_A 55 VSTGSLSLDLALGVGGIP-------RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY--ARALGVN 125 (366)
T ss_dssp ECCSCHHHHHHTSSSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH--HHHTTCC
T ss_pred ecCCCHHHHHHhCCCCcc-------CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH--HHHcCCC
Confidence 4445677888887 4432 4678999999999999999999999999999999999984221110 111111
Q ss_pred ccccceecCCCccChHHHHHhhHHHHH-hcCCcEEEEeCCcccc
Q 012680 123 QVGVPVYTAGTEVKPSQIAKQGLEEAK-KKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 123 ~~gv~v~~~~~~~~~~~i~~~~l~~~~-~~~~DvVIIDtpg~l~ 165 (458)
..++.+... .+ .+.+...+..+. ...+|+||||+...+.
T Consensus 126 ~~~l~i~~~---~~-~e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 126 TDELLVSQP---DN-GEQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp GGGCEEECC---SS-HHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHHceeecC---Cc-HHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 111222221 12 222333333332 3579999999987664
No 76
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.23 E-value=1.5e-06 Score=78.33 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=36.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.+.++.++|.+||||||++.+|+..|..+|++|.++..|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 35689999999999999999999999999999999998865
No 77
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.20 E-value=1.3e-05 Score=73.95 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=39.3
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
..|.+++++... +..+++++|++|+||||++..|+. ..|.+|++++++.
T Consensus 7 ~~LD~~l~Ggi~-------~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFA-------PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBC-------TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred HHHHHhhcCCCc-------CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 456666753321 457999999999999999999998 6689999999875
No 78
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.19 E-value=3.7e-07 Score=96.86 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=69.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..+.|+++|++|+||||++.+|............+.+.+.++....+... .....|+.+..... .+
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~-~E~~rGiTi~~~~~-------------~~ 77 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWME-MEKQRGISITTSVM-------------QF 77 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CCTTEE-------------EE
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccch-hcccCCcceeeeEE-------------EE
Confidence 35689999999999999999987532222222233343433332222211 11222332211100 01
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-hhHhHhhhhhee--eeeeceeeeecccCCCCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNI--EIGITGAILTKLDGDSRG 225 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-~~~~~~~~~~~~--~~~i~GvIlnk~D~~~~~ 225 (458)
.+.++.+.|+||||...+...... . ...+|.+++|+|+..+ +........... .++ .-+|+||+|.....
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~----~--l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~ 150 (529)
T 2h5e_A 78 PYHDCLVNLLDTPGHEDFSEDTYR----T--LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRD 150 (529)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHH----G--GGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSC
T ss_pred EECCeEEEEEECCCChhHHHHHHH----H--HHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCcccc
Confidence 125788999999998544322221 1 2235899999999654 222222222222 233 34789999976433
Q ss_pred c--ceeeeeeccCCce
Q 012680 226 G--AALSVKEVSGKPI 239 (458)
Q Consensus 226 g--~~~~i~~~~g~pI 239 (458)
. .+..+.+.++.++
T Consensus 151 ~~~~~~~i~~~l~~~~ 166 (529)
T 2h5e_A 151 PMELLDEVENELKIGC 166 (529)
T ss_dssp HHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHhCCCc
Confidence 1 2333444455443
No 79
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.18 E-value=5.2e-06 Score=79.71 Aligned_cols=42 Identities=38% Similarity=0.615 Sum_probs=37.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++.+|+++|.+||||||++..|+..|...|+.+++++.|..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 467999999999999999999999998889988888888544
No 80
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.15 E-value=2.7e-05 Score=78.33 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=49.2
Q ss_pred hHHHhHHHHHHhhc-cceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 44 LVKIVRDELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 44 ~~~~v~~el~~llg-~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+..-..+|..+|| +... +..++.+.|++|+||||++..++..+...|.+|++++++.
T Consensus 41 ~i~TG~~~LD~~Lg~GGi~-------~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 41 VIPTGSLAIDIATGVGGYP-------RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EECCSCHHHHHHTSSSSEE-------TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eecCCCHHHHHHhccCCcc-------CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 35566788999998 6543 5689999999999999999999999999999999999864
No 81
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.13 E-value=1.1e-05 Score=81.09 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=67.9
Q ss_pred HHHhHHHHHHhhc-cceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcc-
Q 012680 45 VKIVRDELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE- 122 (458)
Q Consensus 45 ~~~v~~el~~llg-~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~- 122 (458)
+..-..+|..+++ +... +..++.+.|++|+||||++..++..+.+.|.+|++++++...... ....++.
T Consensus 42 i~TG~~~LD~~Lg~GGl~-------~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~--~a~~lG~~ 112 (349)
T 2zr9_A 42 IPTGSISLDVALGIGGLP-------RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE--YAKKLGVD 112 (349)
T ss_dssp ECCSCHHHHHHTSSSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHTTCC
T ss_pred cccCCHHHHHHhccCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH--HHHHcCCC
Confidence 4455677888888 5532 467999999999999999999999999999999999987422111 1111111
Q ss_pred ccccceecCCCccChHHHHHhhHHHH-HhcCCcEEEEeCCcccc
Q 012680 123 QVGVPVYTAGTEVKPSQIAKQGLEEA-KKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 123 ~~gv~v~~~~~~~~~~~i~~~~l~~~-~~~~~DvVIIDtpg~l~ 165 (458)
..++.++.. .+..+ +...+..+ ....+++||||.+..+.
T Consensus 113 ~~~l~i~~~---~~~e~-~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 113 TDSLLVSQP---DTGEQ-ALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp GGGCEEECC---SSHHH-HHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHHeEEecC---CCHHH-HHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 111222211 12222 22223322 23569999999988764
No 82
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.2e-05 Score=86.78 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=23.8
Q ss_pred hHHHHHHhcccchHHHHHHHHHHhhhhhccccccccCccchhHHHhHHHHHHh
Q 012680 3 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKL 55 (458)
Q Consensus 3 ~i~~~Ll~adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~~~~v~~el~~l 55 (458)
++..+|-+..+++ ...++.++.+..+.++.+.-+|...+.+.+.+.+.++
T Consensus 55 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (611)
T 3izq_1 55 SLKLALFDNNFDL---ESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANI 104 (611)
T ss_dssp HHHHHHHHTTTCS---SHHHHHHHHTTCSSSCC--------------------
T ss_pred HHHHHHHHhhccH---HHHHHHHHHHhccccccCCCChHHHHHHHHHHHHHhh
Confidence 5777777777777 6677888888888888877777766666666655554
No 83
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.10 E-value=3.2e-05 Score=77.31 Aligned_cols=183 Identities=13% Similarity=0.186 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhhhh-ccccccccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHH
Q 012680 17 VVRRFVQAVSEQAV-GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 17 vv~~~~~~v~~~~~-~~~~~~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
++.+.++.+.+... +.+...++..+ ...|..++++- .+..+++++|.+|+||||++.++|..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~gi~TG-------~~~LD~~~gGl--------~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 7 VLESAMDLITENQRKGSLEVTGIPTG-------FVQLDNYTSGF--------NKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSBCCS-------CHHHHHHHCSB--------CTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcCcccCC-------ChHHHHHhcCC--------CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45556666665543 33333343332 35666667632 1457999999999999999999999999
Q ss_pred hcCCceEEeeccccCchhhhHHhhhccccccceecC-CCccChHH--HHHhhHHHHHhcCCcEEEEeCCccccccHHHHH
Q 012680 96 KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQ--IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMD 172 (458)
Q Consensus 96 ~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~-~~~~~~~~--i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~~ 172 (458)
..|.+|++++++.-.......+ ++...+++.-.. ....+..+ .+..+...+. +..+.|.|+|+. .. ..+..
T Consensus 72 ~~g~~Vl~fSlEms~~ql~~Rl--ls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~--~~~l~I~d~~~~-si-~~i~~ 145 (338)
T 4a1f_A 72 NDDRGVAVFSLEMSAEQLALRA--LSDLTSINMHDLESGRLDDDQWENLAKCFDHLS--QKKLFFYDKSYV-RI-EQIRL 145 (338)
T ss_dssp HTTCEEEEEESSSCHHHHHHHH--HHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHH--HSCEEEECCTTC-CH-HHHHH
T ss_pred HcCCeEEEEeCCCCHHHHHHHH--HHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHh--cCCeEEeCCCCC-cH-HHHHH
Confidence 9999999999875432222211 111122221110 00122222 2233333332 346777787653 21 12333
Q ss_pred HHHHHHhhcCcceEEEEEec---cch--------h---hHhHhhhhheeeeeeceeeeecccC
Q 012680 173 ELKDVKRVLNPTEVLLVVDA---MTG--------Q---EAAALVTTFNIEIGITGAILTKLDG 221 (458)
Q Consensus 173 el~~l~~~~~~~~vllVvda---~~g--------~---~~~~~~~~~~~~~~i~GvIlnk~D~ 221 (458)
.+..+.... +..-++|||. ... + ...+.++.+...+++.-++++.+..
T Consensus 146 ~ir~l~~~~-gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R 207 (338)
T 4a1f_A 146 QLRKLKSQH-KELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNR 207 (338)
T ss_dssp HHHHHHHHC-TTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred HHHHHHHhc-CCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 334443322 1345788886 111 1 1223345566677888788887753
No 84
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.10 E-value=2.7e-05 Score=72.00 Aligned_cols=53 Identities=26% Similarity=0.402 Sum_probs=41.7
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
..|..++++... +..+++++|++|+||||++..|+..+...|.+|++++.+..
T Consensus 10 ~~Ld~~~~ggi~-------~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 10 LDFDKLIQGGIP-------QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp HHHHGGGTTSEE-------TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred hHHHHHhcCCCc-------CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 345666643321 45699999999999999999999888888889999998753
No 85
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.08 E-value=2.9e-06 Score=81.84 Aligned_cols=134 Identities=21% Similarity=0.209 Sum_probs=71.2
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...|+++|.+|+||||+...|. |.+.. +. + .|+. .+...... +.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~------g~~~~-~~-~--~~~~-----------t~~~~~~~---------------~~ 46 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT------GLRQH-VG-N--WPGV-----------TVEKKEGI---------------ME 46 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH------TTCEE-EE-E--CTTS-----------SCEEEEEE---------------EE
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCCcc-cC-C--CCCe-----------EEEeeEEE---------------EE
Confidence 3578899999999999998885 33321 11 0 0100 11111000 01
Q ss_pred hcCCcEEEEeCCccccccHHHHHHH--HHHHhhcCcceEEEEEeccchhhHhHhhhhhee-e-eeeceeeeecccCCCC-
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI-E-IGITGAILTKLDGDSR- 224 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el--~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~-~-~~i~GvIlnk~D~~~~- 224 (458)
..++.+.|+||||..........+. ......-.++.+++|+|+............... . .+ .-+|+||+|....
T Consensus 47 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 47 YREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKN-IILVLNKFDLLKKK 125 (271)
T ss_dssp ETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCS-EEEEEECHHHHHHH
T ss_pred ECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCC-EEEEEEChhcCccc
Confidence 1356799999999765432222221 112222357899999999766443333322221 2 22 3488999994321
Q ss_pred --CcceeeeeeccCCcee
Q 012680 225 --GGAALSVKEVSGKPIK 240 (458)
Q Consensus 225 --~g~~~~i~~~~g~pI~ 240 (458)
......+.+.+|.|+.
T Consensus 126 ~~~~~~~~l~~~lg~~~~ 143 (271)
T 3k53_A 126 GAKIDIKKMRKELGVPVI 143 (271)
T ss_dssp TCCCCHHHHHHHHSSCEE
T ss_pred ccHHHHHHHHHHcCCcEE
Confidence 1123345556677763
No 86
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=98.07 E-value=7.9e-05 Score=77.22 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=37.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+..+++++|.||+||||++.++|...+.+|.+|++++++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 457999999999999999999999999889999999988543
No 87
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.06 E-value=1.1e-05 Score=79.40 Aligned_cols=116 Identities=17% Similarity=0.280 Sum_probs=64.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
++-.|+++|.+|+||||+...|. |.++..+...+... .....+ ++.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~------g~~~~i~s~~~~tT--------~~~~~~--~~~------------------ 54 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLL------GTKVSIISPKAGTT--------RMRVLG--VKN------------------ 54 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSSCCC--------CSCEEE--EEE------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHh------CCCccccCCCCCce--------eeEEEE--EEe------------------
Confidence 45789999999999999998885 55554332221100 000001 111
Q ss_pred Hhc-CCcEEEEeCCcccccc------HHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHh-hhhhee-eeeeceeeee
Q 012680 149 KKK-NVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL-VTTFNI-EIGITGAILT 217 (458)
Q Consensus 149 ~~~-~~DvVIIDtpg~l~~d------~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~-~~~~~~-~~~i~GvIln 217 (458)
.. +++++|+||||..... ..+....... .-.+|.+++|+|+..+ ...... ...+.. ..+ .-+|+|
T Consensus 55 -~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~--l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~N 130 (308)
T 3iev_A 55 -IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS--LEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVIN 130 (308)
T ss_dssp -ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH--HHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEE
T ss_pred -cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHH--hhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEE
Confidence 12 6789999999986432 1222221111 1235889999999643 222222 222221 222 347899
Q ss_pred cccCC
Q 012680 218 KLDGD 222 (458)
Q Consensus 218 k~D~~ 222 (458)
|+|..
T Consensus 131 K~Dl~ 135 (308)
T 3iev_A 131 KIDKI 135 (308)
T ss_dssp CGGGS
T ss_pred CccCC
Confidence 99975
No 88
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.04 E-value=8.7e-05 Score=73.28 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=36.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+..+++++|.+|+||||++.++|...+.+|.+|++++++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 4679999999999999999999999998899999999874
No 89
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.00 E-value=9.2e-07 Score=93.77 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=72.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..+.|+++|++|+||||++.+|..+-........+-+.+..+....+.. ......|+.+..... .+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~-~~e~~~GiTi~~~~~-------------~~ 77 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWM-ELEKQRGISVTTSVM-------------QF 77 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHH-HHHHHHCCSSSSSEE-------------EE
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccc-hhhhcCCeeEEEeEE-------------EE
Confidence 4578999999999999999999643211100000000000011111111 111122333221100 01
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh-hHhHhhhhheeeeee-ceeeeecccCCCCC-
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGI-TGAILTKLDGDSRG- 225 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~-~~~~~~~~~~~~~~i-~GvIlnk~D~~~~~- 225 (458)
.+.++.+.|+||||...+....... .-.+|.+++|+|+..+. ......+......++ .-+|+||+|.....
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~~------l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~ 151 (528)
T 3tr5_A 78 PYKDYLINLLDTPGHADFTEDTYRT------LTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPS 151 (528)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHHG------GGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCH
T ss_pred EeCCEEEEEEECCCchhHHHHHHHH------HHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccH
Confidence 2247889999999976543322211 22358999999996542 111222222222222 34889999975332
Q ss_pred -cceeeeeeccCCc
Q 012680 226 -GAALSVKEVSGKP 238 (458)
Q Consensus 226 -g~~~~i~~~~g~p 238 (458)
..+..+.+.++.+
T Consensus 152 ~~~l~ei~~~l~~~ 165 (528)
T 3tr5_A 152 IELLDEIESILRIH 165 (528)
T ss_dssp HHHHHHHHHHHCCE
T ss_pred HHHHHHHHHhhCCC
Confidence 2233344445543
No 90
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.97 E-value=9.3e-05 Score=73.00 Aligned_cols=139 Identities=20% Similarity=0.325 Sum_probs=78.2
Q ss_pred cccchHHHHHHHHHHhhhhhccccccccCccchh---------HHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccc
Q 012680 11 ADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQL---------VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 81 (458)
Q Consensus 11 adv~~~vv~~~~~~v~~~~~~~~~~~~~~p~~~~---------~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~Gs 81 (458)
.+++..-+.++++...+... .++.....+ +..-..+|..++++... +..++.++|.+|+
T Consensus 42 ~gis~~~a~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~GGl~-------~g~i~~i~G~~gs 109 (322)
T 2i1q_A 42 EGISEKAAAKMIMGARDLCD-----LGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLE-------SQSVTEFAGVFGS 109 (322)
T ss_dssp TTCCHHHHHHHHHHHHHHTT-----CSCCCTHHHHHHHTTCCEECCSCHHHHHHTTSSEE-------TTEEEEEEESTTS
T ss_pred hCcCHHHHHHHHHHHHHhhh-----hcCCcHHHHHHHhccCCeecCCChhHHHhcCCCcc-------CCeEEEEECCCCC
Confidence 56777778888777765421 122222222 12223566777754322 4679999999999
Q ss_pred cchhHhhHHHHHHH------------hcC----CceEEeeccc-cCchhhhHHhhhcccccc---------ceecCCCcc
Q 012680 82 GKTTVSAKLANYLK------------KQG----KSCMLVAGDV-YRPAAIDQLVILGEQVGV---------PVYTAGTEV 135 (458)
Q Consensus 82 GKTT~a~~LA~~L~------------~~G----~kVllVd~D~-~rp~a~~~l~~~~~~~gv---------~v~~~~~~~ 135 (458)
||||++..++.... ..| .+|++++++. +++..+.+. ....++ .+.......
T Consensus 110 GKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~---~~~~g~~~~~~~~~l~~~~~~~~~ 186 (322)
T 2i1q_A 110 GKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM---AEHAGIDGQTVLDNTFVARAYNSD 186 (322)
T ss_dssp SHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH---HHHHTCCHHHHHHTEEEEECSSHH
T ss_pred CHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH---HHHcCCCHHHHhcCEEEEeCCCHH
Confidence 99999999998642 235 7999999874 334322221 112222 222111111
Q ss_pred ChHHHHHhhHHHHHh-cCCcEEEEeCCccc
Q 012680 136 KPSQIAKQGLEEAKK-KNVDVVIVDTAGRL 164 (458)
Q Consensus 136 ~~~~i~~~~l~~~~~-~~~DvVIIDtpg~l 164 (458)
...+++......+.. .++++||||+-..+
T Consensus 187 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 187 MQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 111223333333333 56899999997765
No 91
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.96 E-value=3.8e-05 Score=76.17 Aligned_cols=106 Identities=18% Similarity=0.246 Sum_probs=62.7
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhc------CCceEEeeccc-cCchhhhHHhhhcc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV-YRPAAIDQLVILGE 122 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~------G~kVllVd~D~-~rp~a~~~l~~~~~ 122 (458)
..|..++++... +..++.++|.+|+||||++..++...... |.+|++++++. +++..+.+. ..
T Consensus 94 ~~LD~~L~GGl~-------~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~---~~ 163 (324)
T 2z43_A 94 QALDGLLAGGIE-------TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM---AK 163 (324)
T ss_dssp HHHHHHTTTSEE-------TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH---HH
T ss_pred hhHHHhcCCCCC-------CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH---HH
Confidence 456666654321 46799999999999999999999876654 78999999875 344322221 12
Q ss_pred cccc---------ceecCCCccChHHHHHhhHHHHHh-cCCcEEEEeCCcccc
Q 012680 123 QVGV---------PVYTAGTEVKPSQIAKQGLEEAKK-KNVDVVIVDTAGRLQ 165 (458)
Q Consensus 123 ~~gv---------~v~~~~~~~~~~~i~~~~l~~~~~-~~~DvVIIDtpg~l~ 165 (458)
..++ .+..........+++......+.. .++++||||+...+.
T Consensus 164 ~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 164 ALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred HhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 2222 122111100011222233333333 579999999977653
No 92
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.96 E-value=1.8e-05 Score=79.15 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=96.0
Q ss_pred CeEEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccce--ecCCCccChHHHHHhhHH
Q 012680 70 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV--YTAGTEVKPSQIAKQGLE 146 (458)
Q Consensus 70 p~iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v--~~~~~~~~~~~i~~~~l~ 146 (458)
.+.++++|. ..+||||++..|...+.++|+++.++..- ..-.+. ...+++. +..+. ....+...+.
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tg-----qtg~~~---~~~gi~~Dav~~df---~aG~ve~~~~ 220 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATG-----QTGVML---EGDGVALDAVRVDF---AAGAVEQMVM 220 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCS-----HHHHHH---HSCSCCGGGSBHHH---HHHHHHHHHH
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEecc-----chhhhh---hcCCcchhHHHHHH---HhhhHHHHHH
Confidence 467888888 89999999999999999999999975422 110111 1112211 11100 0011122222
Q ss_pred HHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-------------hhHhHhhhhh----e--e
Q 012680 147 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-------------QEAAALVTTF----N--I 207 (458)
Q Consensus 147 ~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-------------~~~~~~~~~~----~--~ 207 (458)
.+ .++||++||++.|.+.... ... ...+....+|+.+++|.++..+ .+....+..+ + .
T Consensus 221 ~~-~~~~d~vlVEGqGgl~~P~-~~~-t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~ 297 (349)
T 2obn_A 221 RY-GKNYDILHIEGQGSLLHPG-STA-TLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFG 297 (349)
T ss_dssp HH-TTTCSEEEECCCCCTTSTT-CCT-HHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSC
T ss_pred Hh-ccCCCEEEEeCCCcccCcC-hHh-HHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCC
Confidence 22 3579999999998876433 111 2366777788999999987321 2233333322 2 5
Q ss_pred eeeeceeeeecccCCC--CCcceeeeeeccCCce
Q 012680 208 EIGITGAILTKLDGDS--RGGAALSVKEVSGKPI 239 (458)
Q Consensus 208 ~~~i~GvIlnk~D~~~--~~g~~~~i~~~~g~pI 239 (458)
.+.+.|+++|..+.+. ....+..+.+.+|+|+
T Consensus 298 ~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glPv 331 (349)
T 2obn_A 298 TVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPC 331 (349)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHHHHHHCSCE
T ss_pred CCcEEEEEEECCCCCHHHHHHHHHHHHHHHCCCE
Confidence 6889999999987542 2245566777899998
No 93
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.95 E-value=6.2e-05 Score=75.30 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=62.1
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHh------cCCceEEeeccc-cCchhhhHHhhhcc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGE 122 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~------~G~kVllVd~D~-~rp~a~~~l~~~~~ 122 (458)
.+|..+++++.. +..++.++|.+|+||||++..+|..... .|.+|++++++. +.+..+.+ ...
T Consensus 109 ~~LD~~LgGGl~-------~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~---~~~ 178 (343)
T 1v5w_A 109 QEFDKLLGGGIE-------SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD---IAD 178 (343)
T ss_dssp HHHHHHTTSSBC-------SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH---HHH
T ss_pred hhHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH---HHH
Confidence 456666654321 4679999999999999999999987544 578999999875 23332222 111
Q ss_pred cccc---------ceecCCCccChHHHHHhhHHHHHh--cCCcEEEEeCCcccc
Q 012680 123 QVGV---------PVYTAGTEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQ 165 (458)
Q Consensus 123 ~~gv---------~v~~~~~~~~~~~i~~~~l~~~~~--~~~DvVIIDtpg~l~ 165 (458)
..++ .+..........+++..+...+.. .++++||||+...+.
T Consensus 179 ~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 179 RFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 2222 221111111111222222233333 578999999987654
No 94
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.95 E-value=2.5e-05 Score=76.21 Aligned_cols=66 Identities=24% Similarity=0.448 Sum_probs=50.8
Q ss_pred cccCccchhHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 36 RGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 36 ~~~~p~~~~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
..+++ +++.+++.+.+..+++... ....|.+|+++|++||||||++..|+..+. .....|++|.+|
T Consensus 5 ~~~s~-~~~~~~~~~~~~~~l~~~~-----~~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R 70 (287)
T 1gvn_B 5 VNFTD-KQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFK 70 (287)
T ss_dssp TCCCH-HHHHHHHHHHHHHHHTTCC-----CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHH
T ss_pred cCCCH-HHHHHHHHHHHHHHhcccc-----CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhH
Confidence 34555 6788899999999987532 234688999999999999999999976542 245778998775
No 95
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.94 E-value=7.3e-06 Score=82.41 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.2
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.+..++++|.+|+||||+...|+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45688999999999999998885
No 96
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.94 E-value=1.5e-05 Score=81.49 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=67.2
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...|+++|++|+||||++..|...+.+.|....... + ...+... .....|+.+...... +.
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~---~--~~~d~~~-~e~~~GiTi~~~~~~-------------~~ 71 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD---Y--GDIDKAP-EERARGITINTAHVE-------------YE 71 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCC---H--HHHSCSH-HHHHHTCCCSCEEEE-------------EE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccc---h--hhccCCH-HHHHcCCCEEeeeeE-------------ec
Confidence 457888999999999999999987777664211000 0 0011000 011122221110000 01
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh--hHhHhhhhheeeeeec--eeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGIT--GAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~--GvIlnk~D~~ 222 (458)
..++.+.|+||||..... ..+. .....+|.+++|+|+..+. ...+.. ......++. -+++||+|..
T Consensus 72 ~~~~~~~iiDtpG~~~f~----~~~~--~~~~~aD~~ilVvda~~g~~~qt~~~l-~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 72 TAKRHYSHVDCPGHADYI----KNMI--TGAAQMDGAILVVSAADGPMPQTREHI-LLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp CSSCEEEEEECCCSGGGH----HHHH--HHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHHTTCCCEEEEEECGGGC
T ss_pred cCCeEEEEEECCChHHHH----HHHH--HHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHHcCCCEEEEEEECcccc
Confidence 246789999999975432 2221 1223468999999996541 111111 121223443 3689999964
No 97
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.94 E-value=5.4e-05 Score=74.06 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.9
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..|+++|.+|+||||+..+|.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 468889999999999999986
No 98
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.93 E-value=1.7e-05 Score=76.19 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=49.2
Q ss_pred CCcEEEEeCCccccccHH----HHHH-H-HHHHhhcCcceEEEEEeccchhhHhHhhhhheeeeee-ceeeeecccCCCC
Q 012680 152 NVDVVIVDTAGRLQIDKA----MMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSR 224 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~----l~~e-l-~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlnk~D~~~~ 224 (458)
+.++.|+||||....... ...+ + ......-.++.+++|+|+............+.+ .++ .-+|+||+|....
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~-~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFE-LGKPVVVALNMMDIAEH 125 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTT-SCSCEEEEEECHHHHHH
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHH-cCCCEEEEEEChhcCCc
Confidence 458999999998654321 1111 1 112222457999999999765444433333322 222 3488999996533
Q ss_pred Ccc---eeeeeeccCCceeE
Q 012680 225 GGA---ALSVKEVSGKPIKL 241 (458)
Q Consensus 225 ~g~---~~~i~~~~g~pI~f 241 (458)
.+. ...+.+.+|+|+.+
T Consensus 126 ~~~~~~~~~l~~~lg~~vi~ 145 (256)
T 3iby_A 126 RGISIDTEKLESLLGCSVIP 145 (256)
T ss_dssp TTCEECHHHHHHHHCSCEEE
T ss_pred CCcHHHHHHHHHHcCCCEEE
Confidence 222 22344456777743
No 99
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.92 E-value=1.9e-05 Score=86.00 Aligned_cols=225 Identities=16% Similarity=0.150 Sum_probs=102.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh---cCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK---QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 145 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~---~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l 145 (458)
+.+.++++|++|+||||++..|+..... .| +| .+..... .. ... ....++.+......
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V--~~g~~~~-d~-~~~---e~~~giti~~~~~~----------- 68 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV--EEGTTTT-DY-TPE---AKLHRTTVRTGVAP----------- 68 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG--GGTCCSS-CC-SHH---HHHTTSCCSCEEEE-----------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee--cCCcccc-cC-CHH---HHhcCCeEEecceE-----------
Confidence 4578999999999999999999855432 12 12 1111000 00 000 00112222111000
Q ss_pred HHHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhh-HhHhhhhheeeeee-ceeeeecccCCC
Q 012680 146 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALVTTFNIEIGI-TGAILTKLDGDS 223 (458)
Q Consensus 146 ~~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~-~~~~~~~~~~~~~i-~GvIlnk~D~~~ 223 (458)
+.+..+.+.|+||||...+...... ... ..+.+++|+|+..+-+ .....+......++ .-+|+||+|..
T Consensus 69 --~~~~~~~~nliDTpG~~~f~~~~~~----~l~--~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~- 139 (665)
T 2dy1_A 69 --LLFRGHRVFLLDAPGYGDFVGEIRG----ALE--AADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG- 139 (665)
T ss_dssp --EEETTEEEEEEECCCSGGGHHHHHH----HHH--HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-
T ss_pred --EeeCCEEEEEEeCCCccchHHHHHH----HHh--hcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-
Confidence 0123678999999997643322222 222 2488899999855421 11122211111222 23789999975
Q ss_pred CC--cceeeeeeccCC--ce-eEeecCCccccCCC-CCcch--h----hhhhhcccchhHHHHHHHH----HHhHHhHHH
Q 012680 224 RG--GAALSVKEVSGK--PI-KLVGRGERMEDLEP-FYPDR--M----AGRILGMGDVLSFVEKAQE----VMQQEDAEE 287 (458)
Q Consensus 224 ~~--g~~~~i~~~~g~--pI-~fig~g~~v~dl~~-f~p~~--~----~sr~lG~~dv~~l~e~~~e----~~~e~~~~~ 287 (458)
.. ..+..+.+.++. |+ .+++.+..+..+.. +.... + .+...-..+..+..+.+++ .+.+.+.+.
T Consensus 140 ~~~~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l 219 (665)
T 2dy1_A 140 GDYYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGL 219 (665)
T ss_dssp CCHHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 21 122233333441 11 12233322221100 00000 0 0000001112222233333 333334444
Q ss_pred HHHHHhhcccChhHHHHHHHHHHhhccchhhhhccCC
Q 012680 288 MQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG 324 (458)
Q Consensus 288 ~~~k~~~~~~~~edl~~~l~~~~~~g~~~~~~~~~pg 324 (458)
+.+.+...+++.+++...++.....|. ++-.++|
T Consensus 220 ~e~~l~~~~l~~~~~~~~~~~~~~~~~---~~pv~~~ 253 (665)
T 2dy1_A 220 LEKYLEGEEVTGEALEKAFHEAVRRGL---LYPVALA 253 (665)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHTTS---CEEEEEC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCC---eeEEEEe
Confidence 444444458999999999988887763 3444455
No 100
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.92 E-value=1.9e-05 Score=77.97 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=62.8
Q ss_pred HHHHHHhhc----cceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhc--CCceEEeeccc-cCchhhhHHhhhc
Q 012680 49 RDELVKLMG----GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDV-YRPAAIDQLVILG 121 (458)
Q Consensus 49 ~~el~~llg----~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~--G~kVllVd~D~-~rp~a~~~l~~~~ 121 (458)
..+|..+|| ++.. +. ++.+.|++|+||||++..++..+.+. |.+|++||+.- ..+.. ...++
T Consensus 11 i~~LD~~LGg~~~GGl~-------~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r---a~~lG 79 (333)
T 3io5_A 11 IPMMNIALSGEITGGMQ-------SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY---LRSMG 79 (333)
T ss_dssp CHHHHHHHHSSTTCCBC-------SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH---HHHTT
T ss_pred CHHHHHHhCCCCCCCCc-------CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH---HHHhC
Confidence 367778887 5432 23 78889999999999999999998876 88999999853 23322 11121
Q ss_pred cc-cccceecCCCccChHHHHHhhHHH---HHhcCCcEEEEeCCcccc
Q 012680 122 EQ-VGVPVYTAGTEVKPSQIAKQGLEE---AKKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 122 ~~-~gv~v~~~~~~~~~~~i~~~~l~~---~~~~~~DvVIIDtpg~l~ 165 (458)
-. .++.+.. +.+..++....++. +....+++||||+-..+.
T Consensus 80 vd~d~llv~~---~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 80 VDPERVIHTP---VQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp CCGGGEEEEE---CSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred CCHHHeEEEc---CCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 11 1122221 11222221223333 345679999999976654
No 101
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.91 E-value=4.8e-05 Score=71.07 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=40.6
Q ss_pred HHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHh------cCCceEEeeccc
Q 012680 49 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV 108 (458)
Q Consensus 49 ~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~------~G~kVllVd~D~ 108 (458)
...|..++++... +..++.++|++|+||||++..|+..... .+..|++++++.
T Consensus 10 ~~~LD~~l~ggi~-------~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 10 SKELDKLLQGGIE-------TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp CHHHHHHTTTSEE-------TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred ChHHHHhhcCCCc-------CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3567777865432 4679999999999999999999975432 367899998864
No 102
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.88 E-value=0.00024 Score=73.44 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=35.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-cCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~ 108 (458)
+..+++++|.+|+||||++.++|...+. .|.+|+++++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4579999999999999999999999886 589999999874
No 103
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.88 E-value=0.00029 Score=73.02 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=35.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-cCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~ 108 (458)
+..+++++|.+|+||||++.++|..++. .|.+|++++.+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4579999999999999999999999886 589999999875
No 104
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.88 E-value=8.5e-05 Score=75.94 Aligned_cols=107 Identities=18% Similarity=0.297 Sum_probs=62.2
Q ss_pred HHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHh------cCCceEEeeccc-cCchhhhHHhhhc
Q 012680 49 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILG 121 (458)
Q Consensus 49 ~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~------~G~kVllVd~D~-~rp~a~~~l~~~~ 121 (458)
..+|..+|++... +..++.++|++|+||||++..|+..... .+.+|+++++.. +++..+.+ ..
T Consensus 164 ~~~LD~lLgGGI~-------~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~---~a 233 (400)
T 3lda_A 164 SKNLDTLLGGGVE-------TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS---IA 233 (400)
T ss_dssp CHHHHHHTTTSEE-------TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH---HH
T ss_pred ChhHHHHhcCCcC-------CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH---HH
Confidence 4567777765432 4679999999999999999988765543 357899998864 33332222 12
Q ss_pred ccccc---------ceecCCCccChHHHHHhhHHHHHhcCCcEEEEeCCcccc
Q 012680 122 EQVGV---------PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 122 ~~~gv---------~v~~~~~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~ 165 (458)
...++ .+..........+.+..+...+...++++||||.+..+.
T Consensus 234 ~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~ 286 (400)
T 3lda_A 234 QRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALY 286 (400)
T ss_dssp HHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGC
T ss_pred HHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhC
Confidence 22222 222111110111223333344444678999999976643
No 105
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.86 E-value=2.3e-05 Score=70.44 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=28.0
Q ss_pred hHHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHH
Q 012680 44 LVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 44 ~~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
-.+.+.+++.+++...... .......|+++|.+||||||+...|.
T Consensus 25 ~~~~l~~~l~~~~~~~~~~---~~~~~~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 25 KISQWREWIDEKLGGGSGG---GGSYQPSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp BCHHHHHHHHHHC-----------CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCC---CCCCCCEEEEECCCCCCHHHHHHHHh
Confidence 3556666676666532211 11234578899999999999998875
No 106
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.85 E-value=3.1e-05 Score=73.78 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.0
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
++..|+++|.+|+||||++..|.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHh
Confidence 45678899999999999998886
No 107
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.84 E-value=2.7e-05 Score=78.21 Aligned_cols=74 Identities=16% Similarity=0.344 Sum_probs=40.8
Q ss_pred CCcEEEEeCCccccc-----cHHHHHHHHHH--HhhcCcceEEEEEeccc----hhhHhHhhhhheeeeeeceeeeeccc
Q 012680 152 NVDVVIVDTAGRLQI-----DKAMMDELKDV--KRVLNPTEVLLVVDAMT----GQEAAALVTTFNIEIGITGAILTKLD 220 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~-----d~~l~~el~~l--~~~~~~~~vllVvda~~----g~~~~~~~~~~~~~~~i~GvIlnk~D 220 (458)
..++.|+||||.... .......+..+ ...-.++.+++|+++.. .++....+..+...-...-+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999997653 11111122111 12335788888887632 13334444444432222447899999
Q ss_pred CCCCC
Q 012680 221 GDSRG 225 (458)
Q Consensus 221 ~~~~~ 225 (458)
.....
T Consensus 215 l~~~~ 219 (360)
T 3t34_A 215 LMDKG 219 (360)
T ss_dssp GCCTT
T ss_pred cCCCc
Confidence 75443
No 108
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.79 E-value=0.00023 Score=66.58 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=41.9
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHH-HhcCCceEEeecccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVY 109 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L-~~~G~kVllVd~D~~ 109 (458)
..|.++++++.. +..+++++|.+|+||||+|.++|... .+.|++|++++.+..
T Consensus 17 ~~LD~~l~GGl~-------~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 17 PGFDELIEGGFP-------EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTTGGGTTTSEE-------TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred HHHHHhhcCCCC-------CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 456777765432 46799999999999999999998765 456899999998743
No 109
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.78 E-value=6.5e-05 Score=73.79 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=62.3
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
..|+++|.+|+||||+...|. |.++..++.. |... .....+ ++ ..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~------g~~~~ivs~~---~~tT-----r~~i~~--i~-------------------~~ 52 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLL------GVKVAPISPR---PQTT-----RKRLRG--IL-------------------TE 52 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------TSCCSCCCSS---SCCC-----CSCEEE--EE-------------------EE
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCceeeecCC---CCce-----eEEEEE--EE-------------------Ee
Confidence 368899999999999998886 5554433211 1110 000000 01 11
Q ss_pred cCCcEEEEeCCccccccHHHHHHHH--HHHhhcCcceEEEEEeccchh--h---HhHhhhhheeeeeeceeeeecccCCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTGQ--E---AAALVTTFNIEIGITGAILTKLDGDS 223 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~--~l~~~~~~~~vllVvda~~g~--~---~~~~~~~~~~~~~i~GvIlnk~D~~~ 223 (458)
.++.++|+||||.......+...+. .....-.+|.+++|+|+.... . ..+.+.......+ .-+|+||+|...
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAAK 131 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGCS
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccCC
Confidence 3678999999997643211111111 112223468899999985431 1 1122222211222 347899999753
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.76 E-value=9.6e-05 Score=67.23 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=33.1
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
..+++++|+.|+||||++..++..+..+|++|+++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 4588999999999999999999999889999998754
No 111
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.75 E-value=6.5e-05 Score=70.61 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=19.8
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.+..|+++|.+|+||||+...|.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHc
Confidence 34678899999999999998876
No 112
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.71 E-value=7.7e-05 Score=72.09 Aligned_cols=134 Identities=19% Similarity=0.151 Sum_probs=70.0
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...|+++|.+|+||||+...|. |.+. .+... |+. .+..... . +.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~------g~~~-~v~~~---~g~-----------t~~~~~~--~-------------~~ 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT------GSRQ-RVGNW---AGV-----------TVERKEG--Q-------------FS 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH------TTCE-EEEEC---TTS-----------SSEEEEE--E-------------EE
T ss_pred ccEEEEECCCCCCHHHHHHHHh------CCCc-ccCCC---CCe-----------eEEEEEE--E-------------EE
Confidence 3468889999999999998885 3332 11110 110 0000000 0 01
Q ss_pred hcCCcEEEEeCCccccccH-----HHHHHH-HHHHhhcCcceEEEEEeccchhhHhHhhhhhee-eeeeceeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDK-----AMMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI-EIGITGAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~-----~l~~el-~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~-~~~i~GvIlnk~D~~ 222 (458)
..++.+.|+||||...... .+...+ ......-.++.+++|+|+............+.+ ..+ .-+|+||+|..
T Consensus 47 ~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p-~ivv~NK~Dl~ 125 (274)
T 3i8s_A 47 TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIP-CIVALNMLDIA 125 (274)
T ss_dssp CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCC-EEEEEECHHHH
T ss_pred eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCC-EEEEEECccch
Confidence 1356799999999765321 111111 112222357899999999765443333322221 222 34789999964
Q ss_pred CCCcc---eeeeeeccCCcee
Q 012680 223 SRGGA---ALSVKEVSGKPIK 240 (458)
Q Consensus 223 ~~~g~---~~~i~~~~g~pI~ 240 (458)
...+. ...+.+.+|.|+.
T Consensus 126 ~~~~~~~~~~~l~~~lg~~~i 146 (274)
T 3i8s_A 126 EKQNIRIEIDALSARLGCPVI 146 (274)
T ss_dssp HHTTEEECHHHHHHHHTSCEE
T ss_pred hhhhHHHHHHHHHHhcCCCEE
Confidence 32221 1233445677763
No 113
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.66 E-value=0.00039 Score=66.11 Aligned_cols=42 Identities=31% Similarity=0.585 Sum_probs=34.3
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCch
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 112 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~ 112 (458)
..|.+|+++|++||||||++..|+..+. ..+.+++.|.+|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQ 71 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHh
Confidence 4678999999999999999999987653 34678899987653
No 114
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.66 E-value=0.0001 Score=75.08 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=66.7
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCch-hhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~-a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
..|+++|+.|+||||++.+|.....+.|... +... ..+.. ......|+.+-.... .+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~-------~~~~~~~d~~-~~e~~~giTi~~~~~-------------~~~ 62 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAK-------FKKYEEIDNA-PEERARGITINAAHV-------------EYS 62 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBC-------CCCHHHHHSC-CEEEETTEEEECEEE-------------EEE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccc-------cchhhhhhcC-HHHHhcCcEEEeeeE-------------Eec
Confidence 4688899999999999999988776665421 0000 01111 011122322211000 011
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh--hHhHhhhhheeeeeec--eeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGIT--GAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~--GvIlnk~D~~ 222 (458)
..++.+.|+||||... ....+ ......+|.+++|+|+..+. ...+.. ......++. -+++||+|..
T Consensus 63 ~~~~~~~iiDtpG~~~----f~~~~--~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 63 TAARHYAHTDCPGHAD----YVKNM--ITGTAPLDGCILVVAANDGPMPQTREHL-LLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp CSSCEEEEEECSSHHH----HHHHH--HHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHTTCCCEEEEEECGGGC
T ss_pred cCCeEEEEEECCChHH----HHHHH--HhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHcCCCeEEEEEECcccC
Confidence 2467899999999743 22222 22234568999999996541 111111 111123443 3789999964
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.66 E-value=5.3e-05 Score=72.67 Aligned_cols=132 Identities=24% Similarity=0.331 Sum_probs=69.5
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHh
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 150 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~ 150 (458)
..|+++|.+||||||+...|. |.+.. +. + .| |+.+...... +..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~------g~~~~-~~-~--~p-------------g~tv~~~~~~-------------~~~ 49 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALT------GTKQY-VA-N--WP-------------GVTVEKKEGV-------------FTY 49 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------TTCEE-EE-E--CT-------------TSCCEEEEEE-------------EEE
T ss_pred eEEEEECCCCCCHHHHHHHHH------CCCCc-cc-C--CC-------------CceEEEEEEE-------------EEE
Confidence 468889999999999998885 33322 11 0 01 1111000000 011
Q ss_pred cCCcEEEEeCCccccccHHHHHH-H-HHHHhhcCcceEEEEEeccchhhHhHhhhhhee-eeeeceeeeecccCCCCCcc
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI-EIGITGAILTKLDGDSRGGA 227 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~e-l-~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~-~~~i~GvIlnk~D~~~~~g~ 227 (458)
.++.+.|+||||..........+ + ......-.++.+++|+|+...+........+.+ ..+ .-+|+||+|.....+.
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKK-VILAMTAIDEAKKTGM 128 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTC
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCC-EEEEEECcCCCCccch
Confidence 35789999999976432111111 1 112222357899999999765443333322221 222 3478999996432221
Q ss_pred ---eeeeeeccCCce
Q 012680 228 ---ALSVKEVSGKPI 239 (458)
Q Consensus 228 ---~~~i~~~~g~pI 239 (458)
+..+...+|+|+
T Consensus 129 ~~~~~~l~~~lg~~v 143 (258)
T 3a1s_A 129 KIDRYELQKHLGIPV 143 (258)
T ss_dssp CBCHHHHHHHHCSCE
T ss_pred HHHHHHHHHHcCCCE
Confidence 233444567666
No 116
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.65 E-value=3.2e-05 Score=73.58 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=19.7
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
++..|+++|.+|+||||+...|.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHh
Confidence 44678899999999999998875
No 117
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.65 E-value=0.00013 Score=68.57 Aligned_cols=102 Identities=12% Similarity=0.135 Sum_probs=59.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec--cccCchhhhHHhhhccccccceecCCCccChHHHHHhhHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG--DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 146 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~--D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~ 146 (458)
+..+++++|.+|+||||++..++..+..+|++|+++.. |. + + ..+ .....|+...... .....++...+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~-~~~---i~srlG~~~~~~~-~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-S-IRN---IQSRTGTSLPSVE-VESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-G-CSS---CCCCCCCSSCCEE-ESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-H-HHH---HHHhcCCCccccc-cCCHHHHHHHHHH
Confidence 46799999999999999999999999999999999843 32 1 1 111 2233343321111 1112222211111
Q ss_pred HHHhcCCcEEEEeCCccccccHHHHHHHHHHHh
Q 012680 147 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 179 (458)
Q Consensus 147 ~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~ 179 (458)
......+|+|+||-.-.+. .+....+..+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~--~~~ve~l~~L~~ 114 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFD--DRICEVANILAE 114 (223)
T ss_dssp TTSCTTCCEEEECSGGGSC--THHHHHHHHHHH
T ss_pred HhhCCCCCEEEEecCccCc--HHHHHHHHHHHh
Confidence 1112459999999987653 234444544444
No 118
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.65 E-value=3.7e-05 Score=79.59 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=20.4
Q ss_pred CCeEEEeeccccccchhHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLAN 92 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~ 92 (458)
....|+++|.+++||||+...|..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHH
Confidence 346788999999999999999854
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.64 E-value=0.00014 Score=65.18 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=33.5
Q ss_pred CeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeecc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGD 107 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D 107 (458)
+.++++.|++|+||||++..++..+. ..|..+.+++++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 56899999999999999999999987 779888887754
No 120
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.64 E-value=7.1e-05 Score=73.46 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=61.0
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
..+++++|++|+||||+...|. |.++..++.. |.. +.....++ +.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~------g~~~~i~s~~---~~t-----Tr~~~~gi--~~------------------- 52 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLL------GQKISITSRK---AQT-----TRHRIVGI--HT------------------- 52 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH------TCSEEECCCC---SSC-----CSSCEEEE--EE-------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHH------CCCccccCCC---CCc-----ceeeEEEE--EE-------------------
Confidence 4579999999999999999886 5565543321 111 00011111 11
Q ss_pred hcCCcEEEEeCCccc-cccHHHHHHHHH-HHhh-cCcceEEEEEeccchhhH-hHhhhhhee-eeeeceeeeecccCCC
Q 012680 150 KKNVDVVIVDTAGRL-QIDKAMMDELKD-VKRV-LNPTEVLLVVDAMTGQEA-AALVTTFNI-EIGITGAILTKLDGDS 223 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l-~~d~~l~~el~~-l~~~-~~~~~vllVvda~~g~~~-~~~~~~~~~-~~~i~GvIlnk~D~~~ 223 (458)
..++.++++||||.. .....+...+.. .... -..|.+++|+|+..-... ...+..... ..+ .-+|+||+|...
T Consensus 53 ~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P-~ilvlNK~D~~~ 130 (301)
T 1ega_A 53 EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAP-VILAVNKVDNVQ 130 (301)
T ss_dssp ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSC-EEEEEESTTTCC
T ss_pred ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCC-EEEEEECcccCc
Confidence 135689999999975 211111111111 1111 234667888998422111 111122211 222 347889999764
No 121
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.63 E-value=0.00038 Score=73.07 Aligned_cols=40 Identities=20% Similarity=0.119 Sum_probs=36.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~ 108 (458)
+..+++++|.+|+||||++.++|..++.. |.+|++++++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 45799999999999999999999999886 99999999875
No 122
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.63 E-value=0.00039 Score=67.49 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=35.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~ 108 (458)
+..+++++|++|+||||++..|+..+... |.+|++++.+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 45699999999999999999999988865 88999998764
No 123
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.63 E-value=0.00042 Score=63.94 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=38.5
Q ss_pred HHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHh------cCCceEEeeccc
Q 012680 49 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV 108 (458)
Q Consensus 49 ~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~------~G~kVllVd~D~ 108 (458)
...|..++++... +..+++++|++|+||||++..|+..+.. .+..+++++.+.
T Consensus 11 ~~~LD~~l~ggi~-------~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 11 SKSLDKLLGGGIE-------TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp CHHHHHHTTSSEE-------SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred ChhHHhHhcCCCC-------CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3566777754332 4679999999999999999999875543 245577777653
No 124
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.62 E-value=3.2e-05 Score=70.85 Aligned_cols=27 Identities=44% Similarity=0.652 Sum_probs=24.5
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcC
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQG 98 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G 98 (458)
+++++|++|+||||+...|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 688999999999999999999888667
No 125
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.61 E-value=0.00039 Score=63.89 Aligned_cols=90 Identities=20% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc--CchhhhHHhhhccccccceecCCCcc---Ch-----H
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY--RPAAIDQLVILGEQVGVPVYTAGTEV---KP-----S 138 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~--rp~a~~~l~~~~~~~gv~v~~~~~~~---~~-----~ 138 (458)
++.+++++|.| .||||.|..+|.....+|++|+++.+... ..+-.+-+..+ ++.+...+... .+ .
T Consensus 28 ~g~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 28 RGIIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCCEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHHHH
T ss_pred CceEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHHHH
Confidence 45677777776 99999999999999999999999976542 12222222222 23333222210 10 1
Q ss_pred HHHHhhHHHH----HhcCCcEEEEeCCcc
Q 012680 139 QIAKQGLEEA----KKKNVDVVIVDTAGR 163 (458)
Q Consensus 139 ~i~~~~l~~~----~~~~~DvVIIDtpg~ 163 (458)
..+..++..+ ....||+||+|-.+.
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTY 131 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 2233344433 346799999998754
No 126
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.59 E-value=8.8e-05 Score=79.64 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=57.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..+.|+++|+.|+||||++..|...-..- .+.+ +.....+... .....|+.+.......... ..
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i------~~~~-~~~~~~D~~~-~ErerGiTi~~~~~~~~~~--------~~ 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGL------SDRE-MEAQVLDSMD-LERERGITIKAQSVTLDYK--------AS 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC----------------------------------CEEEEEEE--------CT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCc------cccc-ccccccccch-hhhcccceeeeeEEEEEEe--------cC
Confidence 34689999999999999999987532110 0000 0011111110 1111222221110000000 00
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hhHhHhhhhheeeeeeceeeeecccCCC
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS 223 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlnk~D~~~ 223 (458)
....|.+.|+||||...+....... .. .+|.+++|+|+..+ ++...........++ .-+|+||+|...
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~----l~--~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~ 137 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRS----LA--ACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPA 137 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHH----HH--HCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCeEEEEEEECCCchHHHHHHHHH----HH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccc
Confidence 0124789999999986543322222 22 24889999999654 222221112222333 348899999753
No 127
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.59 E-value=0.00023 Score=61.41 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=17.9
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
.|+++|.+|+||||+...|.
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57888999999999998876
No 128
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.56 E-value=0.00013 Score=64.08 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=36.9
Q ss_pred CCcEEEEeCCccccccHH-HHHHH-HHHHhhcCcceEEEEEeccchhhHhHhhhhhee-eeeeceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQIDKA-MMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI-EIGITGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~-l~~el-~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~-~~~i~GvIlnk~D~~ 222 (458)
++.+.|+||||....... ....+ ........++.+++|+|+...+........+.. ..+ .-+|.||+|..
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 121 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGAN-LLLALNKMDLA 121 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCC-EEEEEECHHHH
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCC-EEEEEEchHhc
Confidence 457899999997643210 00111 111111256888999998654333222222221 222 34788999953
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.56 E-value=0.00016 Score=66.40 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.6
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
....|+++|.+|+||||+...|.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578899999999999998875
No 130
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.55 E-value=0.00049 Score=66.46 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.2
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3468899999999999998886
No 131
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.55 E-value=0.00019 Score=66.06 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=18.6
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...|+++|.+|+||||+...|.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~ 50 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLC 50 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHh
Confidence 4567888999999999998774
No 132
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.55 E-value=0.00025 Score=70.95 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.5
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..|+++|.+|+||||+..+|.
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~ 52 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFV 52 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHh
Confidence 368899999999999998885
No 133
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.54 E-value=0.00022 Score=66.77 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=33.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~ 108 (458)
+..+++++|++|+||||++..|+.... ..+..+.+++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 467999999999999999999986555 6677888887754
No 134
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.54 E-value=0.00015 Score=77.80 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=59.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHHH---hcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 146 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~---~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~ 146 (458)
.+.++++|+.|+||||++..|...-. ..+....+.| .+. .....|+.+..........
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D----------~~~-~ErerGITI~~~~~~~~~~-------- 66 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLD----------TLD-VERERGITVKMQAVRMFYK-------- 66 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC----------------------------------CCCCSEEEEEE--------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccc----------cch-hhhcccceeeeeEEEEEEE--------
Confidence 46889999999999999999975421 1111111111 110 1112233221110000000
Q ss_pred HHHhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hhHhHhhhhheeeeeeceeeeecccCCC
Q 012680 147 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS 223 (458)
Q Consensus 147 ~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlnk~D~~~ 223 (458)
......|.+.|+||||...+.. ++.... ..+|.+++|+|+..+ ++...........++ .-+|+||+|...
T Consensus 67 ~~dg~~~~inliDTPGh~dF~~----ev~r~l--~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 67 AKDGNTYKLHLIDTPGHVDFSY----EVSRAL--AACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp CTTSCEEEEEEECCCCSGGGHH----HHHHHH--HTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred cCCCCeEEEEEEECCCcHhHHH----HHHHHH--HhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 0001247889999999865433 222222 235899999999655 222111111222333 348899999753
No 135
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.54 E-value=6.9e-05 Score=67.57 Aligned_cols=43 Identities=40% Similarity=0.661 Sum_probs=38.3
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.++.+|+++|.+||||||++..|+..+...|.+|.+++.|..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 3578999999999999999999999999999999999988543
No 136
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=97.52 E-value=0.00099 Score=66.61 Aligned_cols=147 Identities=20% Similarity=0.230 Sum_probs=87.3
Q ss_pred CeEEEeecc-ccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 70 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 70 p~iI~i~G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.+.++++|. .++||||++..|...+.++|+++..+..-. .....+...+++.-..... .-.......+..+
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgq-------tg~li~~~~gv~~D~~~~~-~~ag~~e~~i~~~ 240 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQ-------TGILIGADAGYVIDAVPAD-FVSGVVEKAVLKL 240 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSH-------HHHHTTCSEECCGGGSBGG-GHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCc-------eeeeeccCCCCCCCceecc-hhhHHHHhhHHHh
Confidence 456777777 789999999999999999999998765321 1111222223322110000 0011112222233
Q ss_pred HhcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEecc--------------chhhHhHhhhhheeeeeecee
Q 012680 149 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--------------TGQEAAALVTTFNIEIGITGA 214 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~--------------~g~~~~~~~~~~~~~~~i~Gv 214 (458)
..+++|++||+.+|.+........ ...+..-.+|+.++++-++. .-++.......+. ..++.|+
T Consensus 241 ~~~~~D~ivVEGqGgl~~P~~~~v-~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l~-~~~V~gi 318 (350)
T 2g0t_A 241 EKTGKEIVFVEGQGALRHPAYGQV-TLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLS-NAKVIGG 318 (350)
T ss_dssp HHTTCSEEEEECCSCTTCTTTHHH-HHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHSS-SCEEEEE
T ss_pred hhcCCCEEEEccCeeccccCchHH-HHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHhc-CCcEEEE
Confidence 246899999999988764332221 23345556788888876542 1233444445454 6789999
Q ss_pred e-eecccCCCCCcceeeeeeccCCce
Q 012680 215 I-LTKLDGDSRGGAALSVKEVSGKPI 239 (458)
Q Consensus 215 I-lnk~D~~~~~g~~~~i~~~~g~pI 239 (458)
+ +|- .+.+|+|+
T Consensus 319 ~~lN~-------------~~~~glP~ 331 (350)
T 2g0t_A 319 VSLNG-------------GFETDLPV 331 (350)
T ss_dssp ECSSC-------------CCCCSSCE
T ss_pred EEcCc-------------hHHHCCCe
Confidence 9 997 56688888
No 137
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.51 E-value=8.5e-05 Score=67.12 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=35.9
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
..+++++|.+||||||++..|+..+...|++|.++..|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4689999999999999999999999989999999987753
No 138
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.51 E-value=0.00022 Score=65.11 Aligned_cols=43 Identities=37% Similarity=0.674 Sum_probs=37.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
++.+|+++|++||||||++..|+..+...|..+.++|.|..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 5789999999999999999999999987787777888885543
No 139
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.49 E-value=0.00011 Score=70.25 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.8
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+...|+++|.+|+||||+...|.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~ 57 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34578899999999999998886
No 140
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.49 E-value=0.00013 Score=70.13 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.2
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...|+++|.+|+||||+...|.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 4578889999999999998886
No 141
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.49 E-value=0.0002 Score=69.21 Aligned_cols=88 Identities=22% Similarity=0.168 Sum_probs=46.5
Q ss_pred CCcEEEEeCCccccccHHHH-HHH-HHHHhhcCcceEEEEEeccchhhHhHhhhhhee-eeeeceeeeecccCCCCCc--
Q 012680 152 NVDVVIVDTAGRLQIDKAMM-DEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI-EIGITGAILTKLDGDSRGG-- 226 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~-~el-~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~-~~~i~GvIlnk~D~~~~~g-- 226 (458)
++++.|+||||......... ..+ ......-.++.+++|+|++..+........+.+ ..+ .-+++||+|.....+
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~~ 126 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIP-VTIALNMIDVLDGQGKK 126 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSC-EEEEEECHHHHHHTTCC
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCC-EEEEEEChhhCCcCCcH
Confidence 56799999999764321100 111 111111247889999999765443333222222 222 347889999642221
Q ss_pred -ceeeeeeccCCcee
Q 012680 227 -AALSVKEVSGKPIK 240 (458)
Q Consensus 227 -~~~~i~~~~g~pI~ 240 (458)
....+.+.+|+|+.
T Consensus 127 ~~~~~l~~~lg~~vi 141 (272)
T 3b1v_A 127 INVDKLSYHLGVPVV 141 (272)
T ss_dssp CCHHHHHHHHTSCEE
T ss_pred HHHHHHHHHcCCCEE
Confidence 12233445677763
No 142
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.49 E-value=0.00035 Score=73.82 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=62.6
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhcccccc---
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV--- 126 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv--- 126 (458)
.+|..++++... +..+++++|.+|+||||++..++..+...|.+++++..+-.. .++.......|.
T Consensus 268 ~~ld~vL~g~i~-------~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~----~~l~~~~~~~g~~~~ 336 (525)
T 1tf7_A 268 VRLDEMCGGGFF-------KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR----AQLLRNAYSWGMDFE 336 (525)
T ss_dssp HHHHHHTTSSEE-------SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH----HHHHHHHHTTSCCHH
T ss_pred HHHHHHhCCCCC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH----HHHHHHHHHcCCCHH
Confidence 445566654321 467999999999999999999998888789888777754211 121111111111
Q ss_pred --------ceecCC-CccChHHHHHhhHHHHHhcCCcEEEEeCCc
Q 012680 127 --------PVYTAG-TEVKPSQIAKQGLEEAKKKNVDVVIVDTAG 162 (458)
Q Consensus 127 --------~v~~~~-~~~~~~~i~~~~l~~~~~~~~DvVIIDtpg 162 (458)
.+.... ...+..+..+.++..+...+++++|+| |-
T Consensus 337 ~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~ 380 (525)
T 1tf7_A 337 EMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SL 380 (525)
T ss_dssp HHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CH
T ss_pred HHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-Ch
Confidence 111111 123445556666666666789999999 53
No 143
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.49 E-value=0.00018 Score=75.23 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.9
Q ss_pred eEEEeeccccccchhHhhHHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANY 93 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~ 93 (458)
-.|+++|.+|+||||+...|...
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46788999999999999998754
No 144
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.47 E-value=0.00064 Score=71.81 Aligned_cols=43 Identities=40% Similarity=0.580 Sum_probs=38.1
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
..|.+|+++|.+|+||||++..|+.+|...+.++.+++.|.++
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 3578999999999999999999999998889899889988554
No 145
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.46 E-value=0.00014 Score=75.11 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANY 93 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~ 93 (458)
+...|+++|+.|+||||++..|...
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3467889999999999999998654
No 146
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.44 E-value=0.00037 Score=63.87 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEee--ccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 146 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd--~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~ 146 (458)
+.++.+++|+.|+||||.+..++..+..+|++|+++. .|. |.+ ... .....|+..... ...+.. +.++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~-~~~---i~s~~g~~~~a~-~~~~~~----~i~~ 76 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYS-KED---VVSHMGEKEQAV-AIKNSR----EILK 76 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CE---EECTTSCEEECE-EESSST----HHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cch-HHH---HHhhcCCceeeE-eeCCHH----HHHH
Confidence 4579999999999999999999999999999999986 342 111 011 111223221110 001111 2233
Q ss_pred HHHhcCCcEEEEeCCccccccHHHHHHHHHHH
Q 012680 147 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 178 (458)
Q Consensus 147 ~~~~~~~DvVIIDtpg~l~~d~~l~~el~~l~ 178 (458)
.+. ..||+|+||-+-.+. ......+..+.
T Consensus 77 ~~~-~~~dvViIDEaqfl~--~~~v~~l~~l~ 105 (191)
T 1xx6_A 77 YFE-EDTEVIAIDEVQFFD--DEIVEIVNKIA 105 (191)
T ss_dssp HCC-TTCSEEEECSGGGSC--THHHHHHHHHH
T ss_pred HHh-ccCCEEEEECCCCCC--HHHHHHHHHHH
Confidence 322 369999999877753 23344454443
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.44 E-value=0.00013 Score=75.83 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=55.0
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...|+++|.+||||||+...|. |.+...+... | |+..-... ..+.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~------~~~~~~v~~~---~-------------g~t~~~~~-------------~~~~ 67 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIA------GERISIVEDT---P-------------GVTRDRIY-------------SSAE 67 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHE------EEEEC---------------------------CEE-------------EECT
T ss_pred CCEEEEECCCCCcHHHHHHHHh------CCCCcccCCC---C-------------CcceeEEE-------------EEEE
Confidence 3579999999999999998884 4343322211 1 11000000 0001
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHH--hhcCcceEEEEEeccchh--hHhHhhhhhee-eeeeceeeeecccCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVK--RVLNPTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGD 222 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~--~~~~~~~vllVvda~~g~--~~~~~~~~~~~-~~~i~GvIlnk~D~~ 222 (458)
+.+..+.|+||||....+.....++.... ..-.++.+++|+|+..+. .....+..+.. ..+ .-+|+||+|..
T Consensus 68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~p-vilV~NK~D~~ 144 (456)
T 4dcu_A 68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNT 144 (456)
T ss_dssp TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSC-EEEEEECC---
T ss_pred ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCC-EEEEEECccch
Confidence 24678999999996532211122221111 112358899999985431 11222222221 222 34788999975
No 148
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.43 E-value=0.00036 Score=72.50 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.9
Q ss_pred eEEEeeccccccchhHhhHHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANY 93 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~ 93 (458)
..|+++|..++||||++..|...
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46888999999999999998754
No 149
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.43 E-value=0.00018 Score=64.10 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=19.3
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+..|+++|.+|+||||+...|+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999998886
No 150
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.42 E-value=0.0007 Score=60.60 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=19.7
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
....|+++|.+|+||||+...|.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35678899999999999998885
No 151
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.40 E-value=0.0011 Score=66.42 Aligned_cols=52 Identities=25% Similarity=0.403 Sum_probs=38.9
Q ss_pred HHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHh---c---CCceEEeecc
Q 012680 49 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK---Q---GKSCMLVAGD 107 (458)
Q Consensus 49 ~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~---~---G~kVllVd~D 107 (458)
..+|..+|++... +..++.++|++|+||||++..|+..+.. . |-+|+++++.
T Consensus 117 ~~~LD~lL~ggi~-------~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 117 SKSLDKLLGGGIE-------TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp CHHHHHHHTSSEE-------SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CHHHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 3556666664332 5689999999999999999999987643 2 3578888874
No 152
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.40 E-value=0.00082 Score=62.38 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.7
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
....|+++|.+|+||||+...|.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35678899999999999998875
No 153
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.39 E-value=0.00019 Score=73.99 Aligned_cols=117 Identities=20% Similarity=0.280 Sum_probs=52.6
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
.|+++|.+||||||+...|+ |.+..+++- .|+. ... ..... +.+.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~------~~~~~~v~~---~~g~-------T~d--~~~~~-----------------~~~~ 49 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIA------GERISIVED---TPGV-------TRD--RIYSS-----------------AEWL 49 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHE------EEECC-----------------------CEEEE-----------------CTTC
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeecC---CCCC-------ccc--eEEEE-----------------EEEC
Confidence 68899999999999998875 333332211 0110 000 00000 0124
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHH--HhhcCcceEEEEEeccchhhH--hHhhhhheeeeeeceeeeecccCCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGDS 223 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l--~~~~~~~~vllVvda~~g~~~--~~~~~~~~~~~~i~GvIlnk~D~~~ 223 (458)
+..+.|+||||....+..+...+... ...-.+|.+++|+|+..+... ...+..+...-...-+|+||+|...
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 57899999999753221122222111 111235888999998654221 1122212111112347899999754
No 154
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.37 E-value=0.00015 Score=73.37 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.3
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.+.|+++|.+++||||++..|.
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999998885
No 155
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.37 E-value=0.00068 Score=60.39 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..|+++|.+|+||||+...|.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467888999999999998774
No 156
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.36 E-value=0.0012 Score=63.44 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc----------CCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----------GKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~----------G~kVllVd~D~ 108 (458)
+..+++++|++|+||||++..++..++.. +.+|++++.+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 46799999999999999999999876642 35788887753
No 157
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.34 E-value=0.00036 Score=60.10 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=17.7
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...|.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57888999999999998875
No 158
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.33 E-value=0.00075 Score=79.82 Aligned_cols=89 Identities=20% Similarity=0.391 Sum_probs=57.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccce---ecCCCccChHHHHHhhH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV---YTAGTEVKPSQIAKQGL 145 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v---~~~~~~~~~~~i~~~~l 145 (458)
+..++++.|.+|+||||++.++|..+++.|.+|++++++... +++. +...|++. +... . .+.+.+...+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~----~ql~--A~~lGvd~~~L~i~~-~-~~leei~~~l 802 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPIY--ARKLGVDIDNLLCSQ-P-DTGEQALEIC 802 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC----CHHH--HHHTTCCGGGCEEEC-C-SSHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH----HHHH--HHHcCCChhheEEec-C-CcHHHHHHHH
Confidence 568999999999999999999999999999999999987432 2221 22223221 1111 1 1222232223
Q ss_pred HHH-HhcCCcEEEEeCCcccc
Q 012680 146 EEA-KKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 146 ~~~-~~~~~DvVIIDtpg~l~ 165 (458)
..+ ....+++||||.-..+.
T Consensus 803 ~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 803 DALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCC
T ss_pred HHHHHccCCCEEEEechhhhc
Confidence 322 23679999999866554
No 159
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.32 E-value=0.00046 Score=63.75 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=35.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+..++++|++|+||||++..++..+...|.++..++++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3568899999999999999999999998899999888753
No 160
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.32 E-value=0.00043 Score=60.65 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=33.0
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
..++++.|++|+||||++..++..+...|+++..+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 45888999999999999999999888788888877754
No 161
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.31 E-value=0.00036 Score=61.23 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.8
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3568888999999999998875
No 162
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.30 E-value=0.00058 Score=67.59 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=30.2
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
.+++++.|++|+||||++..+|.. .|.+|+++++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 467889999999999999999876 6889999988
No 163
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.30 E-value=0.0005 Score=82.30 Aligned_cols=87 Identities=21% Similarity=0.322 Sum_probs=56.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc-CchhhhHHhhhccc-cccceecCCCccChHHHHHhhHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQ-VGVPVYTAGTEVKPSQIAKQGLE 146 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~-rp~a~~~l~~~~~~-~gv~v~~~~~~~~~~~i~~~~l~ 146 (458)
+++++.++|++|+||||+|.+++....++|.+|++++++-. .+.. ...++.. ..+.+.. .++.+.+.+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~l~v~~----~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQ----PDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEEC----CSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCchhceeec----CChHHHHHHHHH
Confidence 57899999999999999999999999999999999998632 2222 1111110 0122222 223333323333
Q ss_pred -HHHhcCCcEEEEeCCc
Q 012680 147 -EAKKKNVDVVIVDTAG 162 (458)
Q Consensus 147 -~~~~~~~DvVIIDtpg 162 (458)
.++...+|+||||.-.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 2344689999999963
No 164
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.29 E-value=0.00093 Score=63.25 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=33.4
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.++.+|++.|.+||||||.+..|+.+|...|+++.++.-.|
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 35689999999999999999999999999999843333333
No 165
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.29 E-value=0.00018 Score=63.32 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.6
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
++..|+++|.+|+||||+...|.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45678899999999999998875
No 166
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.28 E-value=0.00016 Score=64.87 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=18.8
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+.-|+++|.+|+||||+...|.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3468889999999999998775
No 167
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.28 E-value=0.00057 Score=61.82 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.4
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+..-|+++|.+|+||||+...|.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 45678899999999999998775
No 168
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.27 E-value=0.001 Score=60.63 Aligned_cols=38 Identities=32% Similarity=0.618 Sum_probs=31.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
.+.+|+++|.+||||||++..|+..+ | ..++++|.+..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~~ 54 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALHP 54 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCcc
Confidence 46799999999999999999998776 3 45778887653
No 169
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.26 E-value=0.00019 Score=64.38 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=33.2
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.+|+++|.+||||||++..|+..|...|+.+.+++.|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 4789999999999999999999999889988888654
No 170
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.26 E-value=0.00049 Score=61.98 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=18.1
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 457888999999999998874
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.26 E-value=0.00098 Score=79.84 Aligned_cols=87 Identities=20% Similarity=0.362 Sum_probs=57.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccc-----eecCCCccChHHHHHh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-----VYTAGTEVKPSQIAKQ 143 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~-----v~~~~~~~~~~~i~~~ 143 (458)
++.++.+.|.+|+||||++.++|...++.|.+|+++++..... ++. +...|++ +.. . ...+.+..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~----~~~--a~~lGvd~~~L~I~~---~-~~~e~il~ 451 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PIY--ARKLGVDIDNLLCSQ---P-DTGEQALE 451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC----HHH--HHHTTCCTTTCEEEC---C-SSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH----HHH--HHHcCCCHHHeEEeC---C-CCHHHHHH
Confidence 5689999999999999999999999999999999999874322 111 1222222 221 1 12222323
Q ss_pred hHHHH-HhcCCcEEEEeCCcccc
Q 012680 144 GLEEA-KKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 144 ~l~~~-~~~~~DvVIIDtpg~l~ 165 (458)
.+..+ ....+++||||.-..+.
T Consensus 452 ~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 452 ICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGGGCC
T ss_pred HHHHHHHhcCCcEEEECCHHHhh
Confidence 33322 24679999999865543
No 172
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.26 E-value=0.00035 Score=74.27 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.9
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
....|+++|.+|+||||+...|.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Ll 86 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLL 86 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34688899999999999998886
No 173
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.24 E-value=0.00036 Score=76.32 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=25.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.+..|+++|.+|+||||+..+|. |.+++.++.+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLl------g~~~~~v~~~ 100 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALI------GENLLPSDVN 100 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH------TSSCSCCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCCCCCCC
Confidence 35578999999999999999887 6666554443
No 174
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.24 E-value=0.00019 Score=73.18 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.8
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+...|+++|.+|+||||+..+|.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~ 29 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAIT 29 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45678889999999999998875
No 175
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.24 E-value=0.0004 Score=60.40 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 357888999999999998875
No 176
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.24 E-value=0.00027 Score=78.93 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=38.6
Q ss_pred CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhH-hHhhhh--heeeeeeceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA-AALVTT--FNIEIGITGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~-~~~~~~--~~~~~~i~GvIlnk~D~~ 222 (458)
++.+.||||||...+.......+ -.+|.+++|+|+..+... ....+. ....+++ -+|+||+|..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l------~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAAL------RVTDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHH------HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHH------HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe-EEEEECCCcc
Confidence 57899999999876544332222 235899999999655211 111221 1223333 4899999964
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.23 E-value=7.7e-05 Score=80.09 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=20.9
Q ss_pred CeEEEeeccccccchhHhhHHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
...|+++|++++||||++..|....
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFEL 201 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3568889999999999999996543
No 178
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.23 E-value=0.00032 Score=60.63 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=18.3
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468888999999999998776
No 179
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.23 E-value=0.00034 Score=62.51 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.9
Q ss_pred CCeEEEeeccccccchhHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLAN 92 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~ 92 (458)
.+--|+++|.+|+||||+...|..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999988863
No 180
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.23 E-value=0.00037 Score=62.57 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=19.6
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
....|+++|.+||||||+...|.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 44678899999999999998774
No 181
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.23 E-value=0.00021 Score=69.74 Aligned_cols=42 Identities=21% Similarity=0.556 Sum_probs=34.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++.+|.++|.+||||||++..|+..|...|.++.++++|-+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 466899999999999999999999888888889999999765
No 182
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.21 E-value=0.00084 Score=58.93 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=18.7
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.--|+++|.+|+||||+...|.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 3468888999999999998875
No 183
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.19 E-value=0.00035 Score=61.79 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=18.9
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3568888999999999998876
No 184
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.18 E-value=0.00059 Score=60.00 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.9
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 4568888999999999998775
No 185
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.17 E-value=0.00019 Score=62.30 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.4
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 457888999999999998886
No 186
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.17 E-value=0.00043 Score=61.03 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 468888999999999998775
No 187
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.16 E-value=0.00094 Score=68.78 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=37.4
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh--hHhHhhhhheeeeee--ceeeeecccCCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGI--TGAILTKLDGDS 223 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i--~GvIlnk~D~~~ 223 (458)
.++.+.|+||||...... .+. .....+|.+++|+|+..+. ...+... +....++ .-+++||+|...
T Consensus 102 ~~~~~~iiDtpGh~~f~~----~~~--~~~~~aD~~ilVvDa~~g~~~qt~~~l~-~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTR----NMA--TGASTCDLAIILVDARYGVQTQTRRHSY-IASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGGHH----HHH--HHHTTCSEEEEEEETTTCSCHHHHHHHH-HHHHTTCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHHHH----HHH--HHHhhCCEEEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEEEEcCcCCc
Confidence 356799999999654322 221 1234568999999996541 1111111 1112232 347899999754
No 188
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.16 E-value=0.00053 Score=61.17 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=36.0
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch-----hhHhHhhhhhe-------eeeeeceeeeec
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-----QEAAALVTTFN-------IEIGITGAILTK 218 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g-----~~~~~~~~~~~-------~~~~i~GvIlnk 218 (458)
..+.+.|+||||....... .. . ..-..+.+++|+|+... ......+..+. ...+ .-+|.||
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~-~~---~--~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK 144 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNAS-RK---L--ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNK 144 (198)
T ss_dssp CEEEEEEEECCSCCSCSHH-HH---H--HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEEC
T ss_pred CceEEEEEeCCChHHHHHH-HH---H--HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEc
Confidence 3567999999996543221 11 1 12245888999999632 11122222211 1222 3378899
Q ss_pred ccCCC
Q 012680 219 LDGDS 223 (458)
Q Consensus 219 ~D~~~ 223 (458)
+|...
T Consensus 145 ~Dl~~ 149 (198)
T 3t1o_A 145 RDLPD 149 (198)
T ss_dssp TTSTT
T ss_pred hhccc
Confidence 99754
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.16 E-value=0.00039 Score=63.62 Aligned_cols=42 Identities=31% Similarity=0.350 Sum_probs=37.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++.++.++|.+||||||++..|+..+...|..|.+++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 578999999999999999999999998888889988888654
No 190
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.16 E-value=0.00032 Score=61.02 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357888999999999998875
No 191
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.15 E-value=0.00026 Score=63.38 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=32.3
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
+.+|+++|.+||||||++..|+..|...|.+..+++.|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 46899999999999999999999998888666666654
No 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.14 E-value=0.002 Score=57.01 Aligned_cols=37 Identities=27% Similarity=0.544 Sum_probs=30.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++.+++++|++||||||++..|+..+ | ..++++|...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~ 43 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLH 43 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcccc
Confidence 46799999999999999999988765 4 3567887654
No 193
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.12 E-value=0.0016 Score=71.60 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=40.2
Q ss_pred CCcEEEEeCCcccccc-----H---HHHHHH-HHHHhhcCcceEEEEEeccch---hhHhHhhhhheeeeeeceeeeecc
Q 012680 152 NVDVVIVDTAGRLQID-----K---AMMDEL-KDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKL 219 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d-----~---~l~~el-~~l~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlnk~ 219 (458)
..+++||||||..... . ....++ ..... -.++-+++|+|+... ++....+..+...-.-.-+|+||+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKi 227 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 227 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCc
Confidence 3579999999987521 1 122222 11111 234677888898543 333344444443222244899999
Q ss_pred cCCCCC
Q 012680 220 DGDSRG 225 (458)
Q Consensus 220 D~~~~~ 225 (458)
|.....
T Consensus 228 Dlv~~~ 233 (772)
T 3zvr_A 228 DLMDEG 233 (772)
T ss_dssp TSSCTT
T ss_pred ccCCcc
Confidence 976444
No 194
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.12 E-value=0.0003 Score=61.35 Aligned_cols=23 Identities=48% Similarity=0.717 Sum_probs=19.4
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
++..|+++|.+|+||||+...|.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34578899999999999998874
No 195
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.12 E-value=0.0003 Score=64.80 Aligned_cols=42 Identities=31% Similarity=0.442 Sum_probs=37.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D~~r 110 (458)
++.+|+++|.+||||||++..|+..|. ..|.++.+++.|..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 567999999999999999999999998 789989999987554
No 196
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.12 E-value=0.0011 Score=68.20 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=56.2
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
.|+++|.+||||||+...|. |.+..+++ | .|+. +.....+ .+ .+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~------~~~~~~v~-~--~~g~-----T~d~~~~--~~-------------------~~~ 47 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLV------KKKKAIVE-D--EEGV-----TRDPVQD--TV-------------------EWY 47 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHH------C----------------------CCSEE--EE-------------------EET
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCCceec-C--CCCC-----ccceeeE--EE-------------------EEC
Confidence 68899999999999998886 44433222 1 0111 0000000 00 123
Q ss_pred CCcEEEEeCCcccccc-HHHHHHHH--HHHhhcCcceEEEEEeccchhhHh-Hhhhhheeeeee-ceeeeecccCC
Q 012680 152 NVDVVIVDTAGRLQID-KAMMDELK--DVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGI-TGAILTKLDGD 222 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~d-~~l~~el~--~l~~~~~~~~vllVvda~~g~~~~-~~~~~~~~~~~i-~GvIlnk~D~~ 222 (458)
+..+.|+||||..... ..+...+. .....-.+|.+++|+|+..+.... ..+..+....+. .-+|+||+|..
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 4578999999975321 11111111 111223468899999985442111 111111111122 34789999964
No 197
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.11 E-value=0.00037 Score=60.55 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
--|+++|.+|+||||+...|.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 458888999999999998874
No 198
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.11 E-value=0.00035 Score=62.41 Aligned_cols=42 Identities=45% Similarity=0.709 Sum_probs=36.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++.+|+++|.+||||||++..|+..+...|..+..+|.|..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 467899999999999999999999987789888888877544
No 199
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.11 E-value=0.00032 Score=73.34 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=32.5
Q ss_pred cCCcEEEEeCCccccccHHHHHHH---HHHHhhcCcceEEEEEeccchhh------HhHhhhhheeeeeeceeeeecccC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQE------AAALVTTFNIEIGITGAILTKLDG 221 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el---~~l~~~~~~~~vllVvda~~g~~------~~~~~~~~~~~~~i~GvIlnk~D~ 221 (458)
.++.+.|+||||...... ..... ......-.++.+++|+|+..... .......+. ..+ .-+|+||+|.
T Consensus 279 ~g~~l~liDT~G~~~~~~-~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~p-iIvV~NK~Dl 355 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAGE-EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-AAK-FLTVANKLDR 355 (476)
T ss_dssp TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSE-EEEEEECTTS
T ss_pred CCeEEEEEECCCCCcchh-HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-CCC-EEEEEECcCC
Confidence 357899999999754211 11110 11222335688999999965432 222222222 222 3478999997
Q ss_pred CCC
Q 012680 222 DSR 224 (458)
Q Consensus 222 ~~~ 224 (458)
...
T Consensus 356 ~~~ 358 (476)
T 3gee_A 356 AAN 358 (476)
T ss_dssp CTT
T ss_pred CCc
Confidence 543
No 200
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.11 E-value=0.0034 Score=55.98 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=27.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.+.+|+++|.+||||||++..|+..+ | ..+++.|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 46799999999999999999988765 3 3566765
No 201
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.10 E-value=0.00067 Score=58.72 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=37.0
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHh---Hhhhhhee-----eeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI-----EIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~---~~~~~~~~-----~~~i~GvIlnk~D~~ 222 (458)
.++.+.|+||||...... . ... ..-.++.+++|+|+....+.. .....+.. ..+ .-+|.||+|..
T Consensus 42 ~~~~~~i~Dt~G~~~~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 114 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRP-L---WRH--YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLP 114 (164)
T ss_dssp SSCEEEEEECCCCGGGHH-H---HHH--HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEEcCCChhhHH-H---HHH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCc
Confidence 357899999999753211 1 111 123458889999986543222 22222211 222 34889999975
Q ss_pred C
Q 012680 223 S 223 (458)
Q Consensus 223 ~ 223 (458)
.
T Consensus 115 ~ 115 (164)
T 1r8s_A 115 N 115 (164)
T ss_dssp T
T ss_pred C
Confidence 4
No 202
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.10 E-value=0.00013 Score=64.27 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=18.6
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3467888999999999998774
No 203
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.09 E-value=0.00039 Score=61.00 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457888999999999998875
No 204
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.08 E-value=0.00058 Score=72.97 Aligned_cols=43 Identities=33% Similarity=0.518 Sum_probs=38.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcC-CceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G-~kVllVd~D~~r 110 (458)
+.+.+|+++|.+||||||++..|+..|..+| +++.++|.|..+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 4578999999999999999999999999888 889999988543
No 205
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.08 E-value=0.00062 Score=59.00 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.3
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468888999999999998875
No 206
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.07 E-value=0.0005 Score=62.77 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.6
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...|+++|.+|+||||+...|.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4568888999999999998876
No 207
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.06 E-value=0.001 Score=58.86 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.1
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...|+++|.+|+||||+...|+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4568899999999999998875
No 208
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.06 E-value=0.0006 Score=70.27 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.9
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.+.-|+++|.+|+||||+...|.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~ 196 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAML 196 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHh
Confidence 45678899999999999998886
No 209
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.05 E-value=0.00038 Score=66.12 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=34.6
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHh-----cCCceEEeecccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKK-----QGKSCMLVAGDVY 109 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~-----~G~kVllVd~D~~ 109 (458)
.+|.+|+++|.+||||||++..|+..|.- .+++|.++++|-+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 36789999999999999999999887753 2677889999854
No 210
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.04 E-value=0.00053 Score=59.49 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.7
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...|.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57888999999999998775
No 211
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.04 E-value=0.00048 Score=62.59 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.0
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578889999999999998775
No 212
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.04 E-value=0.001 Score=61.07 Aligned_cols=42 Identities=33% Similarity=0.457 Sum_probs=35.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++.++.++|++||||||++..|+..+...|..+..|..|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 578999999999999999999999887667778888877543
No 213
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.03 E-value=0.001 Score=78.79 Aligned_cols=91 Identities=21% Similarity=0.376 Sum_probs=57.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCC-ccChHHHHHhhHH-
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLE- 146 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~-~~~~~~i~~~~l~- 146 (458)
+.++|.+.|+.|+||||++..++....++|..++++|+.-. .++.. ....|+++-..-. .++..+.+...++
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~----~~~~~--~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA----LDPIY--ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC----CCHHH--HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC----CCHHH--HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 45899999999999999999999998899999999998632 12211 2333443211100 1111122222222
Q ss_pred HHHhcCCcEEEEeCCcccc
Q 012680 147 EAKKKNVDVVIVDTAGRLQ 165 (458)
Q Consensus 147 ~~~~~~~DvVIIDtpg~l~ 165 (458)
.+++..+|+|+||....+.
T Consensus 1504 ~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCC
T ss_pred HHHcCCCCEEEEccHHhCC
Confidence 2345789999999966554
No 214
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.03 E-value=8.2e-05 Score=67.51 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=18.3
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+.-|+++|.+|+||||+...|.
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSB
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 4567888999999999997663
No 215
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.03 E-value=0.00044 Score=61.79 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.6
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||++..|+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 467888999999999998886
No 216
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.02 E-value=0.00034 Score=72.91 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=34.1
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchh---------hHhHhhhhheeeeee--ceeeeecc
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGI--TGAILTKL 219 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~---------~~~~~~~~~~~~~~i--~GvIlnk~ 219 (458)
.++.+.|+||||..... ..+ ......+|.+++|+|+..+. ...+.+. .....++ .-|++||+
T Consensus 119 ~~~~~~iiDtPGh~~f~----~~~--~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~-~~~~~~vp~iivviNK~ 191 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYV----TNM--INGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LARTQGINHLVVVINKM 191 (467)
T ss_dssp SSEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHHTTCSSEEEEEECT
T ss_pred CCeEEEEEECCCcHHHH----HHH--HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHH-HHHHcCCCEEEEEEECc
Confidence 35679999999975322 221 12233468999999996542 1111111 1122333 24789999
Q ss_pred cCC
Q 012680 220 DGD 222 (458)
Q Consensus 220 D~~ 222 (458)
|..
T Consensus 192 Dl~ 194 (467)
T 1r5b_A 192 DEP 194 (467)
T ss_dssp TST
T ss_pred cCC
Confidence 974
No 217
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.01 E-value=0.0025 Score=68.06 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=32.9
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEee
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 105 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd 105 (458)
..+++++|.+|+||||++..++..+...|++|+++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 468999999999999999999999999999998775
No 218
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.00 E-value=0.00069 Score=60.06 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.3
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468888999999999998875
No 219
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.00 E-value=0.0011 Score=71.67 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=31.5
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEee
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 105 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd 105 (458)
+.+|.|+||+|||++.+.+...+.++|.+|+++.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 6788899999999999999999999999999876
No 220
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.00 E-value=0.00029 Score=72.50 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=43.4
Q ss_pred cEEEEeCCccccccH---HHHHHHHHHHhhcCcceEEEEEeccchhhHhHhhhhhee-eeeeceeeeecccCCCCCc--c
Q 012680 154 DVVIVDTAGRLQIDK---AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI-EIGITGAILTKLDGDSRGG--A 227 (458)
Q Consensus 154 DvVIIDtpg~l~~d~---~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~~~~~~-~~~i~GvIlnk~D~~~~~g--~ 227 (458)
.+.|+||||...... ....... .....++.+++|+|+............+.. ..+ .-+|+||+|...... .
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~--~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~~~~ 160 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKAR--RVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKAEEL 160 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHH--HHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCCTHH
T ss_pred eEEEEECcCCCcccchhHHHHHHHH--HHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccHHHH
Confidence 799999999764321 0111111 112246889999998322222222222211 222 348899999754332 2
Q ss_pred eeeeeeccCCcee
Q 012680 228 ALSVKEVSGKPIK 240 (458)
Q Consensus 228 ~~~i~~~~g~pI~ 240 (458)
...+.+.++.|+.
T Consensus 161 ~~~l~~~~g~~v~ 173 (423)
T 3qq5_A 161 KGLYESRYEAKVL 173 (423)
T ss_dssp HHHSSCCTTCCCC
T ss_pred HHHHHHHcCCCEE
Confidence 3344445566653
No 221
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.99 E-value=0.0077 Score=59.86 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=56.2
Q ss_pred EEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH-
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK- 149 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~- 149 (458)
.++++|++|+||||++..++..+... +..+..++|...... ..-+..+....+...- ................+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~l~~~~~--~~~~~~~~~~~~l~~~l~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF-TAIIGEIARSLNIPFP--RRGLSRDEFLALLVEHLRE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH-HHHHHHHHHHTTCCCC--SSCCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH-HHHHHHHHHHhCccCC--CCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999999888776 678888887544321 1111111122222211 111122233222222222
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHH
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDV 177 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l 177 (458)
.....++|||=+..+ +......+..+
T Consensus 123 ~~~~~vlilDE~~~l--~~~~~~~L~~~ 148 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL--APDILSTFIRL 148 (389)
T ss_dssp TTCCEEEEEETGGGS--CHHHHHHHHHH
T ss_pred cCCeEEEEEECcccc--chHHHHHHHHH
Confidence 134679999987766 34444444333
No 222
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.99 E-value=0.00029 Score=62.61 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=18.7
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+.-|+++|.+|+||||+...|.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 3468888999999999998775
No 223
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.99 E-value=0.00087 Score=60.41 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=18.7
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+||||||+...|.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 3568888999999999987775
No 224
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.99 E-value=0.0021 Score=57.23 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.7
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+...|+++|.+|+||||+...|.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 35578899999999999998875
No 225
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.99 E-value=0.0006 Score=71.55 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.6
Q ss_pred CCeEEEeeccccccchhHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLAN 92 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~ 92 (458)
++.+|++.|+.++||||++..|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~ 26 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRS 26 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHc
Confidence 466889999999999999988753
No 226
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.98 E-value=0.0012 Score=61.59 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=35.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
.+..+.+++|.-|+||||.+..++..+..+|++|+++..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 345789999999999999999999999999999999863
No 227
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.98 E-value=0.00046 Score=61.85 Aligned_cols=22 Identities=41% Similarity=0.425 Sum_probs=18.8
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3568888999999999998875
No 228
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.98 E-value=0.00035 Score=62.41 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=18.7
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3568888999999999998774
No 229
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.98 E-value=0.0018 Score=63.85 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=30.8
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
..+++++|..||||||+...|+... .|+++.++..|.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~ 40 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecC
Confidence 4589999999999999998887543 688999998774
No 230
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.0012 Score=59.23 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=19.4
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...-|+++|.+|+||||+...|.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~ 29 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34568888999999999998875
No 231
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.00071 Score=60.82 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.8
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHh
Confidence 3468888999999999998875
No 232
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.97 E-value=0.0015 Score=56.21 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358889999999999997775
No 233
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.96 E-value=0.0014 Score=58.40 Aligned_cols=23 Identities=48% Similarity=0.635 Sum_probs=19.5
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
....|+++|.+|+||||+...|.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHh
Confidence 45678899999999999998774
No 234
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.95 E-value=0.0015 Score=58.81 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=19.4
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+..-|+++|.+|+||||+...|.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 34568889999999999998774
No 235
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.94 E-value=0.0054 Score=61.67 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.4
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.++++++|.+|+||||+...|+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998886
No 236
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.94 E-value=0.0022 Score=73.21 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=63.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
...|+++|+.++||||++..|.....+.|.... .+ +. ..+... .....|+.+...... +.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f-~~---~a--~lD~~~-~ErerGITIdva~v~-------------f~ 355 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA-RA---FD--QIDNAP-EEKARGITINTSHVE-------------YD 355 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC----------------------------CCSCEE-------------EE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhcccccccc-cc---cc--cccccc-ccccCceeEEEEEEE-------------Ec
Confidence 356888899999999999999876655553110 00 00 011110 111223222111000 01
Q ss_pred hcCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch--hhHhHhhhhheeeeeec--eeeeecccCCC
Q 012680 150 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT--GAILTKLDGDS 223 (458)
Q Consensus 150 ~~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~--GvIlnk~D~~~ 223 (458)
..++.+.|+||||.... ...+ ......+|.+++|+|+..+ ....+.+. .....++. -+++||+|...
T Consensus 356 ~~~~kI~IIDTPGHedF----~~~m--i~gas~AD~aILVVDAtdGv~~QTrEhL~-ll~~lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 356 TPTRHYAHVDCPGHADY----VKNM--ITGAAQMDGAILVVAATDGPMPQTREHIL-LGRQVGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp CSSCEEEEEECCCHHHH----HHHH--HHTSCCCSEEEEEEETTTCSCTTHHHHHH-HHHHHTCSCEEEEEECCTTCC
T ss_pred CCCEEEEEEECCChHHH----HHHH--HHHHhhCCEEEEEEcCCccCcHHHHHHHH-HHHHcCCCeEEEEEeeccccc
Confidence 24578999999997532 2222 2223456899999999654 11111111 11123343 37899999753
No 237
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.94 E-value=0.00071 Score=60.68 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 467888999999999997775
No 238
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.92 E-value=0.0008 Score=70.37 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=37.9
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccch---hhH--hHhhhhheeeeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEA--AALVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g---~~~--~~~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
.++.+.|+||||.-. ....+. .....+|.+++|+|+..+ ++. +..+.. ..+++ -+++||+|..
T Consensus 71 ~~~~i~iiDtPGh~~----~~~~~~--~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~-IvviNK~Dl~ 138 (482)
T 1wb1_A 71 ENYRITLVDAPGHAD----LIRAVV--SAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPI-IVVITKSDNA 138 (482)
T ss_dssp TTEEEEECCCSSHHH----HHHHHH--HHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCB-CEEEECTTSS
T ss_pred CCEEEEEEECCChHH----HHHHHH--HHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCE-EEEEECCCcc
Confidence 357899999999632 222222 223346899999999653 222 222222 23444 5899999965
No 239
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.92 E-value=0.0011 Score=57.24 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=18.1
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357888999999999998875
No 240
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.92 E-value=0.0034 Score=62.53 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=33.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc--------CCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ--------GKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~--------G~kVllVd~D~ 108 (458)
.+..++++|++|+||||++..++..+... +..+..++|..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 46789999999999999999999988765 77788777643
No 241
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.92 E-value=0.0015 Score=56.82 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=17.5
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...|.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999998774
No 242
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.92 E-value=0.0003 Score=63.65 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=18.9
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 4568888999999999998775
No 243
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.92 E-value=0.00063 Score=61.51 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 468888999999999998775
No 244
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.91 E-value=0.003 Score=64.66 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=29.3
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
..|.+|+++|++||||||++..|+..+ | ..+|+.|..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~---~--~~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA---G--YVHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG---T--CEECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc---C--cEEEccchH
Confidence 457899999999999999998887533 3 466787754
No 245
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.90 E-value=0.00074 Score=60.02 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.3
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+..-|+++|.+|+||||+...|.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHh
Confidence 34678889999999999998875
No 246
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.89 E-value=0.00078 Score=61.12 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.7
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3467888999999999998875
No 247
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.89 E-value=0.00061 Score=61.04 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.3
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 468888999999999998775
No 248
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.88 E-value=0.00062 Score=61.78 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.7
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
+++++|.+||||||+|..|+.. |.++++++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~ 32 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecC
Confidence 3688899999999999998744 7788888874
No 249
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.88 E-value=0.00096 Score=71.53 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.6
Q ss_pred CCeEEEeeccccccchhHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLAN 92 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~ 92 (458)
++.+|++.|++|+||||++..|..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~ 27 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRG 27 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 456899999999999999988863
No 250
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.88 E-value=0.0018 Score=57.39 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=19.7
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+...|+++|.+|+||||+...|.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHT
T ss_pred CeeEEEEECCCCCCHHHHHHHHh
Confidence 45678899999999999998775
No 251
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.88 E-value=0.0014 Score=59.56 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=18.3
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 468888999999999998774
No 252
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.87 E-value=0.00033 Score=69.43 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=36.5
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHh--cCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~--~G~kVllVd~D~~r 110 (458)
..|.++.++|++||||||++..|+..+.. .+.+|.++..|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 46889999999999999999999888774 35679999998764
No 253
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.86 E-value=0.00086 Score=61.24 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEe
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 104 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV 104 (458)
+|.+|+++|.+||||||++..|+..|...|..|..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 467999999999999999999999998888887543
No 254
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.85 E-value=0.00036 Score=63.38 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.1
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~ 29 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 468888999999999997774
No 255
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.85 E-value=0.0022 Score=62.88 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=34.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+..++++|++|+||||++..++..+...|.++..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 457889999999999999999999988888999888763
No 256
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.85 E-value=0.00097 Score=59.64 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=18.8
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+...|+++|.+|+||||+...|.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTS
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34578889999999999997774
No 257
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.85 E-value=0.0005 Score=71.56 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.4
Q ss_pred CeEEEeeccccccchhHhhHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLAN 92 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~ 92 (458)
+..|+++|.+|+||||+...|..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~ 246 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQ 246 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 34588999999999999988863
No 258
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.84 E-value=0.00089 Score=59.28 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=18.4
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
--|+++|.+|+||||+...|.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468889999999999998885
No 259
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.84 E-value=0.0017 Score=67.21 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.9
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.+..|+++|.+|+||||+...|.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~ 216 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAML 216 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHh
Confidence 45678889999999999998875
No 260
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.83 E-value=0.0015 Score=59.63 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.4
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 467889999999999998775
No 261
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.83 E-value=0.0016 Score=57.03 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.4
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468889999999999998875
No 262
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.83 E-value=0.0014 Score=57.55 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.0
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4568888999999999998876
No 263
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.82 E-value=0.006 Score=56.91 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=30.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
.+|+||++.|+|||||||.|..|+..+ |.. .+-.+|..|.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~---g~~-hIstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF---HFN-HLSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH---CCE-EECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH---CCc-eEcHHHHHHH
Confidence 468999999999999999999998766 332 2334466653
No 264
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.82 E-value=0.0044 Score=59.91 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=35.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
+...++++|++|+||||++..++..+...+..+..++|..+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 3458999999999999999999999887777788888875543
No 265
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.82 E-value=0.0008 Score=58.51 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 468888999999999997775
No 266
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.82 E-value=0.0046 Score=61.20 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=33.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc---CCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ---GKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~---G~kVllVd~D~ 108 (458)
.+..++++|++|+||||++..++..+... +..+..++|..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 46789999999999999999999888765 77888888753
No 267
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.00058 Score=60.11 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.7
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+.-|+++|.+|+||||+...|.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3468888999999999998775
No 268
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.0011 Score=59.47 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=18.8
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.--|+++|.+|+||||+...|.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHh
Confidence 3468888999999999998775
No 269
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.81 E-value=0.0006 Score=60.33 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=28.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
|.+|+++|++||||||++..|+.. .....+++.|.++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHHH
Confidence 578999999999999999888762 2335677777544
No 270
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.80 E-value=0.015 Score=54.46 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=31.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEe
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 104 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV 104 (458)
.++.+|++.|.+||||||++..|+..|.. |..|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 35789999999999999999999999988 8877543
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.80 E-value=0.0089 Score=54.26 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=30.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
++.+++++|++||||||++..|+..+ | ..+++.|...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~~ 64 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAFH 64 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEcccccc
Confidence 56799999999999999999998776 4 3567887654
No 272
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.79 E-value=0.00087 Score=60.89 Aligned_cols=38 Identities=37% Similarity=0.377 Sum_probs=34.1
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
+..+++.|++|+||||++..++..+...|.++.++.+.
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 36889999999999999999999999889999888764
No 273
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.79 E-value=0.00057 Score=61.10 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=18.4
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468888999999999998875
No 274
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.78 E-value=0.00072 Score=61.37 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.7
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+.-|+++|.+|+||||+...|.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4467899999999999998774
No 275
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.78 E-value=0.0012 Score=67.48 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.2
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...|+++|+.++||||++..|.
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~ 31 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALT 31 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4578889999999999998885
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.77 E-value=0.00087 Score=65.40 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=34.6
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcC--CceEEe-eccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLV-AGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G--~kVllV-d~D~~r 110 (458)
.+|.+|.++|.+||||||++..|+..+...| .++.++ ..|.|-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 3678999999999999999999999998655 444444 888653
No 277
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.77 E-value=0.0019 Score=57.13 Aligned_cols=22 Identities=23% Similarity=0.458 Sum_probs=18.9
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3567888999999999998876
No 278
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.77 E-value=0.00071 Score=60.49 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=18.9
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 4578889999999999998775
No 279
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.75 E-value=0.00074 Score=60.81 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=18.4
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+..|+++|.+|+||||+...|.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3467899999999999998775
No 280
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.74 E-value=0.00098 Score=60.70 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.8
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHh
Confidence 4568889999999999997775
No 281
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.74 E-value=0.00094 Score=71.86 Aligned_cols=59 Identities=36% Similarity=0.572 Sum_probs=45.6
Q ss_pred HhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 47 IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 47 ~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
+-+++..+++|.. +..++.+|+++|.+||||||++..|+..|..+|..+..+|.|..|.
T Consensus 35 v~~~~r~~~~~~~------~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~ 93 (630)
T 1x6v_B 35 VSRNKRGQVVGTR------GGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 93 (630)
T ss_dssp CCHHHHHHHSSSS------SSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT
T ss_pred CCHHHHHHHhCCC------ccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh
Confidence 4455556665521 1125789999999999999999999999998899999888886543
No 282
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.73 E-value=0.0023 Score=61.44 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.4
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
..|+++|.+|+||||+...|.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 468899999999999998874
No 283
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.73 E-value=0.0017 Score=58.40 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=4.6
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~ 41 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFT 41 (208)
T ss_dssp EEEEEC---------------
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468888999999999998775
No 284
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.72 E-value=0.0013 Score=58.10 Aligned_cols=23 Identities=43% Similarity=0.679 Sum_probs=19.4
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
++..|+++|.+|+||||+...|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45678899999999999997764
No 285
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.72 E-value=0.00086 Score=59.48 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=28.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
+.+|+++|++||||||++..|+..+. .....++.|.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~---~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP---EPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS---SCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC---CCeEEeccchH
Confidence 56899999999999999998886653 34455567743
No 286
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.69 E-value=0.0026 Score=55.39 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=18.6
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+.-|+++|.+|+||||+...|.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCccHHHHHHHHh
Confidence 3468889999999999998775
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.69 E-value=0.00097 Score=59.78 Aligned_cols=37 Identities=35% Similarity=0.559 Sum_probs=29.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.|.+|+++|.+||||||++..|+..+ |. .+++.|..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~~--~~i~~D~~~ 40 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL---RL--PLLSKDAFK 40 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---TC--CEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CC--eEecHHHHH
Confidence 57899999999999999999998876 43 356777543
No 288
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.68 E-value=0.0013 Score=59.86 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=28.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEE
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML 103 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVll 103 (458)
++.+|+++|.+||||||++..|+..|...| .|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~ 36 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL 36 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE
Confidence 357899999999999999999999988777 5543
No 289
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.68 E-value=0.0014 Score=59.03 Aligned_cols=34 Identities=41% Similarity=0.665 Sum_probs=29.3
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEee
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 105 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd 105 (458)
+|+++|.+||||||++..|+..|...|..|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6889999999999999999999988899886443
No 290
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.68 E-value=0.0037 Score=60.42 Aligned_cols=36 Identities=33% Similarity=0.546 Sum_probs=28.7
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
..|.+|+++|.+||||||++..|+. .|. .++++|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~----lg~--~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN----LGA--YIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH----HTC--EEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH----CCC--cEEehhHH
Confidence 4578999999999999999988873 354 46788754
No 291
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.66 E-value=0.012 Score=58.34 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=33.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc------CCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~------G~kVllVd~D~~ 109 (458)
.+..++++|++|+||||++..++..+... +..+..++|...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 46689999999999999999999988764 666777776543
No 292
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.66 E-value=0.0014 Score=59.69 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=30.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEE
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML 103 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVll 103 (458)
++.+|+++|.+||||||++..|+..|...+..+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 46799999999999999999999999888877743
No 293
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0017 Score=65.65 Aligned_cols=117 Identities=16% Similarity=0.265 Sum_probs=61.7
Q ss_pred cCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHH
Q 012680 67 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 146 (458)
Q Consensus 67 ~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~ 146 (458)
+.+-.-|.++|.|.+||||+..+|. |.++.+ +| | | ..+.....|+-.
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt------~~~~~v--~~-~-p-----ftT~~~~~g~~~------------------ 115 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLT------GTESEA--AE-Y-E-----FTTLVTVPGVIR------------------ 115 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHH------SBCCCG--GG-T-C-----SSCCCEEEEEEE------------------
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHh------CCCCcc--cC-C-C-----CceeeeeeEEEE------------------
Confidence 3344678999999999999998886 434331 11 1 1 111111112111
Q ss_pred HHHhcCCcEEEEeCCccccccH---HHHHHHHHHHhhcCcceEEEEEeccchhhHhHhh----hhheeee--eeceeeee
Q 012680 147 EAKKKNVDVVIVDTAGRLQIDK---AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFNIEI--GITGAILT 217 (458)
Q Consensus 147 ~~~~~~~DvVIIDtpg~l~~d~---~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~~----~~~~~~~--~i~GvIln 217 (458)
..+..+.|+||||...... .+.... +..+-.+|-+++|+|+.......+.+ ..+...+ ...-+++|
T Consensus 116 ---~~~~~i~l~D~pGl~~~a~~~~~~g~~~--l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~n 190 (376)
T 4a9a_A 116 ---YKGAKIQMLDLPGIIDGAKDGRGRGKQV--IAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIK 190 (376)
T ss_dssp ---ETTEEEEEEECGGGCCC-----CHHHHH--HHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred ---eCCcEEEEEeCCCccCCchhhhHHHHHH--HHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhh
Confidence 1356799999999864211 111111 11222358899999996543222222 2222221 12347889
Q ss_pred cccC
Q 012680 218 KLDG 221 (458)
Q Consensus 218 k~D~ 221 (458)
|.|.
T Consensus 191 K~d~ 194 (376)
T 4a9a_A 191 KKEK 194 (376)
T ss_dssp ECSS
T ss_pred Hhhh
Confidence 9874
No 294
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.66 E-value=0.0017 Score=57.39 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=9.5
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEECCCCC----------
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468888999999999997775
No 295
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.66 E-value=0.0033 Score=56.58 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=17.0
Q ss_pred CeEEEeeccccccchhHhhHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKL 90 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~L 90 (458)
..-|+++|.+||||||+...|
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 456888899999999997533
No 296
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.65 E-value=0.0014 Score=58.63 Aligned_cols=33 Identities=42% Similarity=0.643 Sum_probs=28.7
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEe
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 104 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV 104 (458)
+|+++|.+||||||++..|+..|...|..+.-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 688999999999999999999998778876533
No 297
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.65 E-value=0.00087 Score=61.31 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=18.0
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHh
Confidence 468888999999999997775
No 298
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.65 E-value=0.011 Score=62.32 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=36.3
Q ss_pred eEEEee-cc-ccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 71 TVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 71 ~iI~i~-G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
+.|+++ |. +++||+++++.|++.|+++|++|..+..|||-
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~ 45 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYI 45 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCS
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccc
Confidence 578888 66 99999999999999999999999999999763
No 299
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.63 E-value=0.0011 Score=60.12 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.1
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468888999999999997775
No 300
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.04 Score=54.30 Aligned_cols=55 Identities=5% Similarity=-0.026 Sum_probs=38.8
Q ss_pred HHHhHHHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhc-------CCceEEeeccc
Q 012680 45 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-------GKSCMLVAGDV 108 (458)
Q Consensus 45 ~~~v~~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-------G~kVllVd~D~ 108 (458)
++.++..|...+.. ..|..++++|++|+|||+++..++..|... ...++.|.|-.
T Consensus 29 ~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 29 FTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp HHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred HHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 44455555555442 257789999999999999999999999753 24556666644
No 301
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.62 E-value=0.0018 Score=56.07 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=17.2
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47888999999999997763
No 302
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.62 E-value=0.0045 Score=58.28 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=34.9
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
....+.+++|.-|+||||.+..++..+..+|++|+++..
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp 55 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 55 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 346899999999999999999999999999999999883
No 303
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.62 E-value=0.0018 Score=63.02 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=30.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
..|+.+++.|++|+|||+++..+|..+ |.++..+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 357889999999999999999999877 666776665
No 304
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.61 E-value=0.0015 Score=60.12 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=35.9
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhH------hhhhheeeeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA------LVTTFNIEIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~------~~~~~~~~~~i~GvIlnk~D~~ 222 (458)
..+.+.|+||||.-.... +... ..-..+.+++|+|......... .+.......++ -+|+||+|..
T Consensus 62 ~~~~~~i~Dt~G~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 132 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGG-LRDG-----YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI-VLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEEEECSGGGTSC-CCHH-----HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCE-EEEEECTTSS
T ss_pred EEEEEEEEeCCChHHHhH-HHHH-----HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECCccc
Confidence 357899999999643211 1111 1113588899999865433221 11122223333 4788999965
No 305
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.61 E-value=0.00065 Score=61.91 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.0
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+..-|+++|.+|+||||+...|.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHH
Confidence 45678889999999999997775
No 306
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.61 E-value=0.0097 Score=62.89 Aligned_cols=40 Identities=20% Similarity=0.446 Sum_probs=36.6
Q ss_pred CeEEEee-cc-ccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 70 PTVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 70 p~iI~i~-G~-~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.+.|+++ |. +++||+++++.|++.|+++|++|..+..|||
T Consensus 12 ~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py 53 (550)
T 1vco_A 12 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPY 53 (550)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred eeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccc
Confidence 4678888 66 9999999999999999999999999999976
No 307
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.60 E-value=0.00069 Score=61.95 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=31.8
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
+|+++|.+||||||++..|+..|...|.+|.++.-+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~ 37 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 789999999999999999999998888888876543
No 308
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.60 E-value=0.028 Score=52.61 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=44.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.++.+++.|++|+||||++..+|..+ +..+..+++..+... +. ......+...+..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~~a 94 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV----------------IG----GLGAARVRSLFKEA 94 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS----------------ST----THHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh----------------cc----ChhHHHHHHHHHHH
Confidence 56778999999999999999998765 455665655422110 00 00122234445555
Q ss_pred HhcCCcEEEEeCCccc
Q 012680 149 KKKNVDVVIVDTAGRL 164 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l 164 (458)
......+++||-...+
T Consensus 95 ~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 95 RARAPCIVYIDEIDAV 110 (262)
T ss_dssp HHTCSEEEEEECC---
T ss_pred HhcCCeEEEEeCcchh
Confidence 4456789999976554
No 309
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.57 E-value=0.0057 Score=54.08 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.6
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...|.
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47888999999999998875
No 310
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.56 E-value=0.0051 Score=58.82 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=43.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.+..+++.|++|+||||++..+|..+ +..+..+.+....... .......+...+..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 106 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKKF--------------------IGEGASLVKDIFKLA 106 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCCS--------------------TTHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHhc--------------------cchHHHHHHHHHHHH
Confidence 46679999999999999999887654 4555555442111000 001122334445555
Q ss_pred HhcCCcEEEEeCCcc
Q 012680 149 KKKNVDVVIVDTAGR 163 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~ 163 (458)
......+++||=.-.
T Consensus 107 ~~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDA 121 (285)
T ss_dssp HHTCSEEEEEETTHH
T ss_pred HHcCCeEEEEECHHH
Confidence 555678999996543
No 311
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.54 E-value=0.0013 Score=60.00 Aligned_cols=40 Identities=30% Similarity=0.386 Sum_probs=28.4
Q ss_pred EeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 64 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 64 ~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+.-.++.+|+++|++||||||++..|+..+ |. .+++.|.
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l---~~--~~i~~d~ 58 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKL---NV--PFIDLDW 58 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---TC--CEEEHHH
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHHc---CC--CEEcchH
Confidence 3333456799999999999999999999777 33 3567663
No 312
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.54 E-value=0.0015 Score=59.89 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.9
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 3568888999999999998875
No 313
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.53 E-value=0.018 Score=53.46 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=29.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCC-ceE
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCM 102 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~-kVl 102 (458)
+.+|++.|..||||||.+..|+.+|...|+ .|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~ 36 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV 36 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce
Confidence 468999999999999999999999999998 554
No 314
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.53 E-value=0.0008 Score=61.59 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=18.3
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCT
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3568888999999999997664
No 315
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.53 E-value=0.0012 Score=58.08 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=18.5
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 4468888999999999997775
No 316
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.52 E-value=0.00038 Score=63.11 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.0
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHH
Confidence 4568889999999999998876
No 317
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.51 E-value=0.0012 Score=58.28 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=18.9
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...|+++|.+|+||||+...|.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 3568889999999999998875
No 318
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0012 Score=60.82 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~ 34 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFT 34 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 468888999999999998775
No 319
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.51 E-value=0.0022 Score=58.52 Aligned_cols=38 Identities=39% Similarity=0.494 Sum_probs=31.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
++.++.++|++||||||++..|+..+.. ++.+++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 5679999999999999999999876643 5788888764
No 320
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.51 E-value=0.0012 Score=57.88 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=27.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.+|+++|.+||||||++..|+..+ | ..+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL---K--YPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH---C--CCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CeeecCcccc
Confidence 478999999999999999988665 3 3467887544
No 321
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.50 E-value=0.0028 Score=67.25 Aligned_cols=41 Identities=34% Similarity=0.572 Sum_probs=37.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.+.+|+++|.+||||||++..|+..|...|+++.++|.|..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 57899999999999999999999999999999999999854
No 322
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.47 E-value=0.00093 Score=59.98 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.6
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.--|+++|.+|+||||+...|.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFS 44 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHh
Confidence 3568888999999999998775
No 323
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.47 E-value=0.00061 Score=72.10 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=20.0
Q ss_pred CCeEEEeeccccccchhHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLAN 92 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~ 92 (458)
++..|++.|++|+||||+...|..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~ 26 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRK 26 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345688899999999999988863
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.47 E-value=0.0016 Score=58.58 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=27.7
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.++.+|+++|.+||||||++..|+..+ .| ..++|+|
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 356789999999999999998887652 13 4567776
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.46 E-value=0.0015 Score=58.43 Aligned_cols=35 Identities=40% Similarity=0.525 Sum_probs=28.0
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
+++|+++|++||||||++..||..+ |. .++|.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~~--~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---KR--ILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---CC--CEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CC--CEEEChHH
Confidence 5688999999999999999998766 33 46777743
No 326
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.46 E-value=0.001 Score=58.79 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=17.9
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
--|+++|.+|+||||+...|.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357888999999999997774
No 327
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.46 E-value=0.0063 Score=61.98 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.2
Q ss_pred CCCeEEEeeccccccchhHhhHHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
++...|+++|+.++||||++..|.
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~ 29 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT 29 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Confidence 345678899999999999998875
No 328
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0035 Score=56.30 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=19.4
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+..-|+++|.+|+||||+...|.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34568889999999999998775
No 329
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.45 E-value=0.0015 Score=58.10 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.6
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 3457888999999999998775
No 330
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.43 E-value=0.0005 Score=62.36 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=18.8
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
+..-|+++|.+|+||||+...|.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 34568888999999999997764
No 331
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.41 E-value=0.0096 Score=59.69 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=48.2
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
..+++++|++||||||+...|+..+... |.+++.+. |+..... . .....+.-...+... ..+.+++..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~~-~-----~~~~~v~q~~~~~~~---~~~~~~La~a 192 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFVH-E-----SKKCLVNQREVHRDT---LGFSEALRSA 192 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCC-C-----CSSSEEEEEEBTTTB---SCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhhh-h-----ccccceeeeeecccc---CCHHHHHHHH
Confidence 4589999999999999999999888765 55555333 4321100 0 000001111111110 1123356666
Q ss_pred HhcCCcEEEEeCCc
Q 012680 149 KKKNVDVVIVDTAG 162 (458)
Q Consensus 149 ~~~~~DvVIIDtpg 162 (458)
...+.|++++|=|.
T Consensus 193 L~~~PdvillDEp~ 206 (356)
T 3jvv_A 193 LREDPDIILVGEMR 206 (356)
T ss_dssp TTSCCSEEEESCCC
T ss_pred hhhCcCEEecCCCC
Confidence 66789999999886
No 332
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.40 E-value=0.0031 Score=66.28 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=35.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-c-CCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-Q-GKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~-G~kVllVd~D~ 108 (458)
.+.+|+++|.+||||||++..||..|.. . |+.+.++|+|.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4679999999999999999999999986 5 47778999986
No 333
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.39 E-value=0.022 Score=54.97 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=27.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCC
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGK 99 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~ 99 (458)
++..++++|++|+||||++..+|..+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 4567999999999999999999999987654
No 334
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.022 Score=51.18 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=27.6
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
.++++|++|+||||++..++..+...+..+.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 38899999999999999999988766555444443
No 335
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.36 E-value=0.0027 Score=57.14 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=19.1
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...-|+++|.+|+||||+...|.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 34568888999999999998875
No 336
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.36 E-value=0.0016 Score=58.95 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=28.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEee
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 105 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd 105 (458)
++.+|+++|.+||||||++..|+..| .|.++..++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 46789999999999999999998776 366666554
No 337
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.35 E-value=0.00051 Score=61.36 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=18.9
Q ss_pred CCeEEEeeccccccchhHhhHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKL 90 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~L 90 (458)
++.-|+++|.+|+||||+...|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l 42 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 3557889999999999999777
No 338
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.34 E-value=0.0019 Score=59.14 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.8
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+|+||||+...|.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3568888999999999998775
No 339
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.34 E-value=0.0027 Score=62.86 Aligned_cols=20 Identities=50% Similarity=0.687 Sum_probs=17.5
Q ss_pred eEEEeeccccccchhHhhHH
Q 012680 71 TVILLAGLQGVGKTTVSAKL 90 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~L 90 (458)
..|+++|.+|+||||+...|
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l 185 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKL 185 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 36888999999999998776
No 340
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.33 E-value=0.00069 Score=67.72 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.2
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|+||||+...|.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~ 179 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVS 179 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSE
T ss_pred eeeeeCCCCCCHHHHHHHHH
Confidence 47889999999999997763
No 341
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.33 E-value=0.0087 Score=53.97 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.0
Q ss_pred CeEEEeeccccccchhHhhHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKL 90 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~L 90 (458)
..-|+++|.+||||||+...|
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHH
Confidence 356888899999999999776
No 342
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.30 E-value=0.0083 Score=59.10 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=45.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+++-+++.|++|+|||+++..+|..+. +..+..+++.... .. ........++..+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~----------~~----------~~g~~~~~~~~lf~~a 101 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLV----------SK----------WLGESEKLVKNLFQLA 101 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSC----------CS----------SCCSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHH----------hh----------hhhHHHHHHHHHHHHH
Confidence 567899999999999999999987762 4445544442110 00 0011223445555555
Q ss_pred HhcCCcEEEEeCCccc
Q 012680 149 KKKNVDVVIVDTAGRL 164 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l 164 (458)
......+++||=.-.+
T Consensus 102 ~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSL 117 (322)
T ss_dssp HHTSSEEEEEETTTGG
T ss_pred HhcCCcEEEeecHHHh
Confidence 5556789999964433
No 343
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.30 E-value=0.0033 Score=58.40 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=32.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEe
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 104 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV 104 (458)
++.+|++.|..||||||.+..|+.+|...|++|.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 467899999999999999999999999999998644
No 344
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.29 E-value=0.029 Score=53.58 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=29.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEee
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVA 105 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd 105 (458)
+..+++++|++||||||+...|+..+... .-+|.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 45699999999999999999999888654 44565444
No 345
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.29 E-value=0.0021 Score=58.33 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=28.7
Q ss_pred cCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 67 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 67 ~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
...+.+|+++|.+||||||++..|+..+ |. .++++|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 4467899999999999999999888654 43 566766
No 346
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.29 E-value=0.059 Score=53.82 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=32.4
Q ss_pred CCeEEEe--eccccccchhHhhHHHHHHHhc------CCceEEeeccc
Q 012680 69 RPTVILL--AGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i--~G~~GsGKTT~a~~LA~~L~~~------G~kVllVd~D~ 108 (458)
.+..+++ +|++|+||||++..++..+... +..++.++|..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 4567888 9999999999999999888754 66777787743
No 347
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.0022 Score=57.57 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=32.1
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+++++|.+||||||++..|+..+...|+++..|..|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 47899999999999999999999998888877776654
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.27 E-value=0.0021 Score=57.80 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+.+|+++|.+||||||++..|+..+. ..+++.|.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~ 45 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG-----FTHLSTGE 45 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT-----CEEEEHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHH
Confidence 356899999999999999999987763 35677653
No 349
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=96.27 E-value=0.0042 Score=64.06 Aligned_cols=44 Identities=32% Similarity=0.439 Sum_probs=37.1
Q ss_pred CCeEEEeec-cc---cccchhHhhHHHHHHHhcCCceEEeeccccCchhhh
Q 012680 69 RPTVILLAG-LQ---GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 115 (458)
Q Consensus 69 ~p~iI~i~G-~~---GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~ 115 (458)
..++|++++ .+ |.||||++.+||..|++.|+||+++ .++|....
T Consensus 56 ~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~ 103 (557)
T 3pzx_A 56 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGP 103 (557)
T ss_dssp CCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHH
T ss_pred CCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccc
Confidence 467888874 48 9999999999999999999999998 77776443
No 350
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=96.25 E-value=0.019 Score=54.32 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=38.0
Q ss_pred CCeEEEeecc--ccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~--~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
..+.|+++|- +|.||-.+|+.|+..|..+|++|..+..|||-
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYl 65 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYI 65 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCce
Confidence 3578888854 99999999999999999999999999999974
No 351
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.25 E-value=0.0023 Score=57.13 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=27.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
+|.+|+++|.+||||||++..|+..+ |. .+++.|
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 36789999999999999999998765 33 456765
No 352
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.24 E-value=0.01 Score=61.10 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=33.8
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhc--CCceEEeeccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDV 108 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~--G~kVllVd~D~ 108 (458)
+..+++.|++|+||||++..++..+... +.++..+++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 5578999999999999999999988776 78888888764
No 353
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.24 E-value=0.0055 Score=57.42 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=36.1
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHh-cCCceEEeecccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVY 109 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd~D~~ 109 (458)
.++.+|++.|..||||||.+..|+.+|.. .|++|.++.-.|.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 46789999999999999999999999999 9999987444443
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.23 E-value=0.0036 Score=61.31 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=34.9
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHH--hcCCceEEeeccccC
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYR 110 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~--~~G~kVllVd~D~~r 110 (458)
.++.++.++|++||||||++..|+..+. -.+-.|.++++|-+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 3578999999999999999999988776 345568888888543
No 355
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.23 E-value=0.0037 Score=54.98 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=30.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-------cCCceEEeec
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG 106 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-------~G~kVllVd~ 106 (458)
.+..++++|++|+||||++..++..+.. .+..+..+++
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 3557889999999999999999998876 3556665554
No 356
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.22 E-value=0.022 Score=56.82 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=28.4
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
..++.++++|++|+||||++..+|..+ +..+..+++
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 357789999999999999999998654 555665554
No 357
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.21 E-value=0.0048 Score=65.14 Aligned_cols=84 Identities=10% Similarity=0.058 Sum_probs=45.5
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhH---hhhhheeeeeeceeeeecccCCCCCcc
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIEIGITGAILTKLDGDSRGGA 227 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~---~~~~~~~~~~i~GvIlnk~D~~~~~g~ 227 (458)
..+.+.|+||||.-.... +.. .. .-.++.+++|+|+...++... .+..+....++ -+|.||+|.......
T Consensus 96 ~~~~~~i~Dt~G~e~~~~-~~~---~~--l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pv-ilV~NK~Dl~~~~~v 168 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHA-SHQ---FF--MTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPV-IVVMNKIDENPSYNI 168 (535)
T ss_dssp TTCEEEEECCCSCCTTTT-TCH---HH--HHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCE-EEEECCTTTCTTCCC
T ss_pred ceEEEEEEECCcHHHHHH-HHH---HH--ccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCE-EEEEECCCccccccc
Confidence 367899999999533211 111 11 113588899999965543332 22333333443 389999997543221
Q ss_pred ----eeeeeeccCCceeE
Q 012680 228 ----ALSVKEVSGKPIKL 241 (458)
Q Consensus 228 ----~~~i~~~~g~pI~f 241 (458)
+.......+.|+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~ 186 (535)
T 3dpu_A 169 EQKKINERFPAIENRFHR 186 (535)
T ss_dssp CHHHHHHHCGGGTTCEEE
T ss_pred CHHHHHHHHHhcCCceEE
Confidence 22233345666643
No 358
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.19 E-value=0.0018 Score=57.84 Aligned_cols=33 Identities=42% Similarity=0.625 Sum_probs=26.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+|+++|.+||||||++..|+..| |. .++|.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~D~ 35 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL---GV--GLLDTDV 35 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH---TC--CEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CC--CEEeCch
Confidence 368999999999999999998765 33 4678774
No 359
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.19 E-value=0.0038 Score=56.89 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=30.3
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.++.+|+++|.+||||||++..|+..+. .+.+++.|.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 3568999999999999999988874321 5788998865
No 360
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.19 E-value=0.0041 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.0
Q ss_pred CCCeEEEeeccccccchhHhhHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKL 90 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~L 90 (458)
.++.+++++|++||||||++..+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 35779999999999999999763
No 361
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.18 E-value=0.023 Score=57.23 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=30.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEee
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVA 105 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd 105 (458)
+..+++++|++||||||+...|+..+... ..+|.+++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 45799999999999999999999988765 45665555
No 362
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.16 E-value=0.0086 Score=64.33 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=39.1
Q ss_pred CCcEEEEeCCccccc-----cHHHHHHHHHHHhh-c-CcceE-EEEEecc---chhhHhHhhhhheeeeeeceeeeeccc
Q 012680 152 NVDVVIVDTAGRLQI-----DKAMMDELKDVKRV-L-NPTEV-LLVVDAM---TGQEAAALVTTFNIEIGITGAILTKLD 220 (458)
Q Consensus 152 ~~DvVIIDtpg~l~~-----d~~l~~el~~l~~~-~-~~~~v-llVvda~---~g~~~~~~~~~~~~~~~i~GvIlnk~D 220 (458)
..+++|+|.||.... |......+..+... + .+..+ ++|+++. ..+.+...+..+.....-+-+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 367999999975432 33333344333333 2 23333 4444542 224556666666554344558999999
Q ss_pred CCCCC
Q 012680 221 GDSRG 225 (458)
Q Consensus 221 ~~~~~ 225 (458)
.-..+
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 65443
No 363
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.16 E-value=0.013 Score=57.49 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=45.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+++-+++.|++|+|||+++.++|..+ +..+..+++.. +. ... .......++..+..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~--------l~--~~~----------~g~~~~~~~~~f~~a 106 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD--------LV--SKW----------MGESEKLVKQLFAMA 106 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHH--------HH--TTT----------GGGHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHH--------Hh--hcc----------cchHHHHHHHHHHHH
Confidence 46789999999999999999998764 45555554421 10 000 011223345555555
Q ss_pred HhcCCcEEEEeCCccc
Q 012680 149 KKKNVDVVIVDTAGRL 164 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l 164 (458)
......+++||=...+
T Consensus 107 ~~~~~~vl~iDEid~l 122 (322)
T 3eie_A 107 RENKPSIIFIDQVDAL 122 (322)
T ss_dssp HHTSSEEEEEECGGGG
T ss_pred HhcCCeEEEechhhhh
Confidence 5556789999965544
No 364
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.16 E-value=0.002 Score=58.65 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=18.1
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|++.|.+|+||||+...|.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~ 30 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYT 30 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 468888999999999997775
No 365
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.15 E-value=0.0051 Score=64.23 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.5
Q ss_pred CeEEEeeccccccchhHhhHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLAN 92 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~ 92 (458)
+..|+++|.+|+||||+...|..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~ 265 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLN 265 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHC
Confidence 34688999999999999988863
No 366
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.15 E-value=0.011 Score=56.79 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=43.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+++.+++.|++|+||||++..+|..+ +.....+++..... . .........+..+..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~----------~----------~~~~~~~~~~~~~~~~ 109 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTS----------K----------YVGDGEKLVRALFAVA 109 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSS----------S----------SCSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhh----------c----------ccchHHHHHHHHHHHH
Confidence 46789999999999999999988755 34444444321100 0 0011223344445555
Q ss_pred HhcCCcEEEEeCCccc
Q 012680 149 KKKNVDVVIVDTAGRL 164 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l 164 (458)
......+++||=...+
T Consensus 110 ~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 110 RHMQPSIIFIDEVDSL 125 (297)
T ss_dssp HHTCSEEEEEETGGGT
T ss_pred HHcCCcEEEeccHHHh
Confidence 5456789999976544
No 367
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.13 E-value=0.023 Score=58.65 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=30.1
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCC-ceEEee
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVA 105 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~-kVllVd 105 (458)
.+++.|.+|+||||++..++.+|...|. +|+++.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 7889999999999999999999998887 666654
No 368
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.13 E-value=0.0062 Score=57.44 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=27.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
+|.+|+++|++||||||++..|+..+ | ..++++|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~---g--~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH---C--YCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence 57899999999999999999998765 3 3455553
No 369
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0018 Score=57.97 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.4
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+|+||||+...|.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~ 39 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 468888999999999998876
No 370
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.12 E-value=0.0019 Score=57.41 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=18.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
+|.+|+++|.+||||||++..|+..|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999998887654
No 371
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.11 E-value=0.004 Score=61.09 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=34.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHH-hcCCceEEeecc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGD 107 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~-~~G~kVllVd~D 107 (458)
+..+++.|++|+|||+++.+++..+. +.|++|.++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 46889999999999999999999999 899999988764
No 372
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.11 E-value=0.0026 Score=57.38 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=28.7
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.+|.+|+++|.+||||||++..|+.. | ..++|+|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----C--CEEEcccHH
Confidence 35789999999999999999888753 5 456788743
No 373
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.10 E-value=0.0023 Score=56.37 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=26.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+.+|+++|++||||||++..||..+. ..++|+|.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~-----~~~id~d~ 37 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN-----MEFYDSDQ 37 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT-----CEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEeccH
Confidence 45799999999999999988876543 35677763
No 374
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.10 E-value=0.0029 Score=56.80 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=27.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
++.+|+++|.+||||||++..|+..+ |. .+++.|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l---~~--~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY---GY--THLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence 46789999999999999999998766 33 356665
No 375
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.10 E-value=0.0063 Score=56.21 Aligned_cols=86 Identities=26% Similarity=0.327 Sum_probs=48.4
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHHhc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 151 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~~~ 151 (458)
+|++.|+|||||||.|..|+..+ |. +.+-.+|..|...... ..++.... .++.. ...-|.+++...+.... .
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~---g~-~~istGdllR~~i~~~-t~lg~~~~-~~~~~-G~lvpd~iv~~lv~~~l-~ 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK---GF-VHISTGDILREAVQKG-TPLGKKAK-EYMER-GELVPDDLIIALIEEVF-P 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CC-EEEEHHHHHHHHHHHT-CHHHHHHH-HHHHH-TCCCCHHHHHHHHHHHC-C
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CC-eEEcHHHHHHHHHHhc-ChhhhhHH-HHHhc-CCcCCHHHHHHHHHHhh-c
Confidence 57888999999999999998765 33 2344467766432110 01111100 01111 22335566655565544 3
Q ss_pred CCcEEEEeCCcccc
Q 012680 152 NVDVVIVDTAGRLQ 165 (458)
Q Consensus 152 ~~DvVIIDtpg~l~ 165 (458)
..+-+|+|+=|+..
T Consensus 74 ~~~~~ilDGfPRt~ 87 (206)
T 3sr0_A 74 KHGNVIFDGFPRTV 87 (206)
T ss_dssp SSSCEEEESCCCSH
T ss_pred cCCceEecCCchhH
Confidence 45678999866643
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.09 E-value=0.0049 Score=58.04 Aligned_cols=45 Identities=27% Similarity=0.445 Sum_probs=30.4
Q ss_pred EeccCCCeEEEeeccccccchhHhhHHHHHHHhc-----CCceEEeeccc
Q 012680 64 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-----GKSCMLVAGDV 108 (458)
Q Consensus 64 ~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-----G~kVllVd~D~ 108 (458)
.+.-.++.+|.++|+.||||||++..|+..+... ..++.+++.|.
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 3433467899999999999999999998766321 23455666553
No 377
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.07 E-value=0.0071 Score=59.14 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.7
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
.-|+++|.+||||||+...|.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~ 24 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIF 24 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999987764
No 378
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.06 E-value=0.0063 Score=63.39 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=37.4
Q ss_pred cCCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEeccchhhHhHh---hhhhee-----eeeeceeeeecccCC
Q 012680 151 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI-----EIGITGAILTKLDGD 222 (458)
Q Consensus 151 ~~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda~~g~~~~~~---~~~~~~-----~~~i~GvIlnk~D~~ 222 (458)
.++.+.|+||||.-...... ....-.++.+++|+|+......... ...+.. ..+ .-+|+||+|..
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~------~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~ 436 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLW------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLP 436 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGG------GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSS
T ss_pred CCEEEEEEECCCcHHHHHHH------HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCC
Confidence 46789999999964332110 1112246889999998654332222 122211 222 34788999975
Q ss_pred C
Q 012680 223 S 223 (458)
Q Consensus 223 ~ 223 (458)
.
T Consensus 437 ~ 437 (497)
T 3lvq_E 437 D 437 (497)
T ss_dssp S
T ss_pred c
Confidence 3
No 379
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.06 E-value=0.0045 Score=54.39 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=29.2
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHh-------cCCceEEeec
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG 106 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~-------~G~kVllVd~ 106 (458)
+..++++|++|+||||++..++..+.. .+..+..+++
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 456789999999999999999998876 3555555543
No 380
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.05 E-value=0.0028 Score=55.23 Aligned_cols=28 Identities=36% Similarity=0.694 Sum_probs=22.5
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceE
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 102 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVl 102 (458)
.+|+++|++||||||++..| .+.|+.++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 37899999999999999887 44576644
No 381
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.01 E-value=0.0056 Score=63.01 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.9
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.+..++++|.+||||||+...|.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHh
Confidence 35678899999999999998876
No 382
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.01 E-value=0.0037 Score=56.75 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=28.0
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
..|.+|+++|.+||||||++..|+..+ |.. +++.|
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 356799999999999999999998776 433 56664
No 383
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.01 E-value=0.0034 Score=55.83 Aligned_cols=34 Identities=38% Similarity=0.445 Sum_probs=26.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.+.+|+++|.+||||||++..|+..+ | ..+++.|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~---~--~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS---G--LKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh---C--CeEEEHH
Confidence 35678899999999999999998766 3 3455655
No 384
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.00 E-value=0.0035 Score=56.15 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=27.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
++.+++++|++||||||++..|+.. .+.....++.|
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 4679999999999999999888753 23334566665
No 385
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.00 E-value=0.021 Score=57.33 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.1
Q ss_pred eEEEeeccccccchhHhhHHHHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
+.++++|.+|+||||+...|.....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~ 187 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEAT 187 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhcc
Confidence 4688999999999999999976543
No 386
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.99 E-value=0.014 Score=58.64 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.3
Q ss_pred eEEEeeccccccchhHhhHHHHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
..++++|.+|+||||+...|....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 468899999999999999887543
No 387
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.98 E-value=0.0028 Score=58.20 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=18.8
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+||||||+...|.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~ 48 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLA 48 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHh
Confidence 3568888999999999998775
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.97 E-value=0.0033 Score=55.29 Aligned_cols=33 Identities=39% Similarity=0.585 Sum_probs=26.6
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+|+++|.+||||||++..|+..| |. .++|.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d~ 35 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL---GY--EFVDTDI 35 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CC--cEEcccH
Confidence 478999999999999999998766 33 4677774
No 389
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=95.97 E-value=0.057 Score=51.44 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=38.3
Q ss_pred CCeEEEeecc--ccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 69 RPTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 69 ~p~iI~i~G~--~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
..+.|+++|- +|-||=.+|+.|+..|+.+|++|.++..|||-
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYl 65 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYI 65 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSS
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccce
Confidence 4678888864 99999999999999999999999999999974
No 390
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.023 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=22.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
.|. ++++|++|+||||++..|+..+.
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 355 89999999999999999998654
No 391
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.95 E-value=0.0044 Score=61.74 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=30.1
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
+.+|+++|++||||||++..||..+. +.+|++|.+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 36899999999999999999987663 678999975
No 392
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.0043 Score=64.43 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=31.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~ 109 (458)
+..+++++|+.||||||++..|+-++... |+++++++.|+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~ 178 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ 178 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCcc
Confidence 45689999999999999999998877654 525456777754
No 393
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.90 E-value=0.013 Score=51.36 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=18.2
Q ss_pred eEEEeeccccccchhHhhHHH
Q 012680 71 TVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA 91 (458)
--|++.|.+||||||+...|.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457888999999999998775
No 394
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.88 E-value=0.0042 Score=57.28 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=27.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
++.+|++.|.+||||||++..||..|. . .+++.|
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~--~~i~~d 36 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH---A--AHLATG 36 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC---C--EEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---c--eEEehh
Confidence 467899999999999999999987763 3 456664
No 395
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.87 E-value=0.0039 Score=55.51 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=26.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
++.+|+++|.+||||||++..|+..+ |. .+++.|
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 35689999999999999999998766 33 456664
No 396
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.87 E-value=0.03 Score=50.75 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=24.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ 97 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~ 97 (458)
.+..++++|++|+||||++..++..+...
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35689999999999999999999877644
No 397
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.87 E-value=0.0045 Score=58.81 Aligned_cols=34 Identities=26% Similarity=0.218 Sum_probs=27.4
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.+|+++|++||||||++..||..+. ..+++.|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~-----~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG-----WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC-----CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC-----CeEEeccHH
Confidence 4789999999999999999987653 346787753
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.86 E-value=0.0041 Score=54.62 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=26.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
...+|+++|.+||||||++..||..| |. -++|+|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~--~~id~D~ 40 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL---KL--EVLDTDM 40 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH---TC--CEEEHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 35689999999999999998888765 43 4567763
No 399
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.86 E-value=0.006 Score=57.27 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=29.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc----CCceEEe
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----GKSCMLV 104 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~----G~kVllV 104 (458)
++.+|++.|..||||||.+..|+.+|... |++|.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 46789999999999999999999999988 9998643
No 400
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.83 E-value=0.0083 Score=59.02 Aligned_cols=42 Identities=31% Similarity=0.362 Sum_probs=34.7
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhc-C-CceEEeecccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVY 109 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G-~kVllVd~D~~ 109 (458)
.++.++.++|++||||||++..|+..+... | .+|.+|..|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 467899999999999999999999888643 4 56888887764
No 401
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.83 E-value=0.0039 Score=55.26 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=26.5
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+|+++|++||||||++..||..+. ..++|.|.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~-----~~~~d~d~ 37 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD-----LVFLDSDF 37 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcccH
Confidence 3688999999999999999987663 35677774
No 402
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=95.82 E-value=0.07 Score=55.74 Aligned_cols=41 Identities=32% Similarity=0.407 Sum_probs=37.3
Q ss_pred CeEEEeecc--ccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 70 PTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 70 p~iI~i~G~--~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
.+.|+++|- +|.||-.+++.|+..|+.+|++|..+..|||-
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpyl 45 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYI 45 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcce
Confidence 467888854 99999999999999999999999999999974
No 403
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.82 E-value=0.0044 Score=54.23 Aligned_cols=32 Identities=31% Similarity=0.313 Sum_probs=25.7
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+|+++|.+||||||++..|+..+ |. .++++|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~--~~i~~d~ 33 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NI--PFYDVDE 33 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TC--CEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CC--CEEECcH
Confidence 58899999999999999988766 33 4567764
No 404
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.79 E-value=0.018 Score=49.49 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=28.7
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.-+++.|.+|+|||++|..++......+.... ++|.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 35789999999999999998876666666666 6664
No 405
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.77 E-value=0.014 Score=55.63 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=26.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEee
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 105 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd 105 (458)
.+..++++|++|+||||+|..+|..+ +..+..++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 46789999999999999999998763 45544443
No 406
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.75 E-value=0.03 Score=52.68 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=26.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
.|+-++++|++|+||||++..++..+ +..+..+++
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~ 78 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISG 78 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECS
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeH
Confidence 35568899999999999999998765 344444443
No 407
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.73 E-value=0.015 Score=55.66 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=44.5
Q ss_pred HHHHHhhccceeeeEeccCCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 50 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 50 ~el~~llg~~~~~~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
..|.++++++.. +.++++++|-+|+||||++..++..-.++|.+++++..+-
T Consensus 8 ~~LD~~l~GGl~-------~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e 59 (260)
T 3bs4_A 8 EELDREIGKIKK-------HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY 59 (260)
T ss_dssp HHHHHHHCCBCT-------TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred HHHHHHhCCCCC-------CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC
Confidence 567888887642 5678999999999999999999998889999999999874
No 408
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.72 E-value=0.0088 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.7
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
..-|+++|.+||||||+...|.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 3568888999999999998775
No 409
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.72 E-value=0.0073 Score=53.91 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=18.6
Q ss_pred CeEEEeeccccccchhHhhHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA 91 (458)
.--|+++|.+||||||+...|.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3567888999999999998775
No 410
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.71 E-value=0.02 Score=57.12 Aligned_cols=73 Identities=22% Similarity=0.334 Sum_probs=44.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+++-+++.|++|+|||+++..+|..+ +..+..+++. .+. ... + ......++..+..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~--------~l~--~~~-----~-----g~~~~~~~~~f~~a 139 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS--------DLV--SKW-----M-----GESEKLVKQLFAMA 139 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHH--------HHH--SCC-------------CHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHH--------HHh--hhh-----c-----chHHHHHHHHHHHH
Confidence 45678899999999999999998876 4455544432 110 000 0 01123344445555
Q ss_pred HhcCCcEEEEeCCccc
Q 012680 149 KKKNVDVVIVDTAGRL 164 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l 164 (458)
......++|||=...+
T Consensus 140 ~~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 140 RENKPSIIFIDQVDAL 155 (355)
T ss_dssp HHTSSEEEEEECGGGG
T ss_pred HHcCCeEEEEechHhh
Confidence 5456789999965443
No 411
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.68 E-value=0.0043 Score=59.96 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=28.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
|.+|+++|.+||||||++..|+..+ .| ..+++.|.+|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~--~~--~~~i~~D~~r 38 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN--PG--FYNINRDDYR 38 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS--TT--EEEECHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC--CC--cEEecccHHH
Confidence 5689999999999999998887632 13 4677877554
No 412
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.68 E-value=0.016 Score=57.12 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=28.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+.+|+++|++||||||++..||..+ ...+|++|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 5689999999999999999998654 356888885
No 413
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.67 E-value=0.0046 Score=57.09 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=27.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.|.+|++.|++||||||++..||..|. ...++.|
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~-----~~~i~~d 37 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ-----LAHISAG 37 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC-----CEECCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CceecHH
Confidence 467899999999999999999987764 2456654
No 414
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.61 E-value=0.0063 Score=55.33 Aligned_cols=33 Identities=36% Similarity=0.491 Sum_probs=25.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+.+|.++|.+||||||++..|+. .|. .++|+|.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~----lg~--~~id~d~ 34 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD----LGV--PLVDADV 34 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT----TTC--CEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH----CCC--cccchHH
Confidence 35889999999999999988864 354 4568774
No 415
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.59 E-value=0.024 Score=51.89 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=33.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
..++.+++|+.|+||||.....+..+..+|++|+++..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 46799999999999999988888888888999999974
No 416
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.59 E-value=0.004 Score=56.80 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
++++|+++|++||||||++..|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 56789999999999999999998766
No 417
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.58 E-value=0.0077 Score=54.95 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=28.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.-.+|.++|..||||||++..|+..+ | ..++|+|.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 34689999999999999998887653 5 467888854
No 418
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.023 Score=58.28 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=44.4
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
.+|+=+++.|+||+|||++|.++|..+ |.....+++.-.. . .........++..+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~-------------------~-~~~Ge~e~~ir~lF~~ 260 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFV-------------------H-KYLGEGPRMVRDVFRL 260 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTC-------------------C-SSCSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhh-------------------c-cccchhHHHHHHHHHH
Confidence 367889999999999999999998765 4445544432100 0 0011123345666666
Q ss_pred HHhcCCcEEEEeC
Q 012680 148 AKKKNVDVVIVDT 160 (458)
Q Consensus 148 ~~~~~~DvVIIDt 160 (458)
++....-+++||-
T Consensus 261 A~~~aP~IifiDE 273 (428)
T 4b4t_K 261 ARENAPSIIFIDE 273 (428)
T ss_dssp HHHTCSEEEEEEC
T ss_pred HHHcCCCeeechh
Confidence 6655667888885
No 419
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.55 E-value=0.0076 Score=56.18 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=27.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.+..|++.|.+||||||++..||..|. ..+++.|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~-----~~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC-----VCHLATG 48 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT-----CEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CceecHH
Confidence 456899999999999999999998763 3456664
No 420
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.55 E-value=0.0067 Score=55.90 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=26.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
++..|++.|.+||||||++..||..| |. .+++.|
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 37 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY---GL--AHLSTG 37 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence 34578899999999999999999877 43 355654
No 421
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.54 E-value=0.016 Score=54.00 Aligned_cols=39 Identities=8% Similarity=-0.070 Sum_probs=34.0
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
....+.+++|.-|+||||.+..++..+..+|++|+++..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 356899999999999999998889988889999998854
No 422
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.54 E-value=0.042 Score=52.91 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=23.3
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQ 97 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~ 97 (458)
|. ++++|++|+||||++..++..+...
T Consensus 43 ~~-~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 43 PH-MIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp CC-EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred Ce-EEEECcCCCCHHHHHHHHHHHhcCC
Confidence 44 8899999999999999999887643
No 423
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.54 E-value=0.0074 Score=55.44 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH-----hcC-CceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK-----KQG-KSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~-----~~G-~kVllVd~D 107 (458)
-+.+++++|.+|+|||+.|..++..+. +.| ++|.+..+|
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 356889999999999999988876654 567 666556555
No 424
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.023 Score=58.42 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=44.1
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
.+|+-+++.|+||+|||++|.++|..+ |.....+++...- . .........++..+..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~-------------------~-~~vGese~~ir~lF~~ 269 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLV-------------------Q-MYIGEGAKLVRDAFAL 269 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC-------------------S-SCSSHHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhh-------------------h-cccchHHHHHHHHHHH
Confidence 357899999999999999999988665 4445544432100 0 0001123345666666
Q ss_pred HHhcCCcEEEEeC
Q 012680 148 AKKKNVDVVIVDT 160 (458)
Q Consensus 148 ~~~~~~DvVIIDt 160 (458)
+.....-+|+||-
T Consensus 270 A~~~aP~IifiDE 282 (434)
T 4b4t_M 270 AKEKAPTIIFIDE 282 (434)
T ss_dssp HHHHCSEEEEEEC
T ss_pred HHhcCCeEEeecc
Confidence 6655667888885
No 425
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.47 E-value=0.0053 Score=56.92 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=26.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
++.+|+++|.+||||||++..|+..+ |. .+++.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 46789999999999999999988755 33 456654
No 426
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.47 E-value=0.0093 Score=54.74 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=27.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.|.+|+++|.+||||||++..|+. .|. .++|+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~----lg~--~~id~D~ 36 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD----LGI--NVIDADI 36 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH----cCC--EEEEccH
Confidence 467999999999999999988874 354 5677773
No 427
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.47 E-value=0.098 Score=51.45 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK 96 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~ 96 (458)
.|..++++|++|+||||++..+|..+..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 4678999999999999999999988764
No 428
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.027 Score=57.94 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=44.5
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
.+|+=+++.|+||+|||++|.++|..+ |.....+++.-.- . .........++..+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~-------------------s-k~~Gese~~ir~~F~~ 269 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIV-------------------D-KYIGESARIIREMFAY 269 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTC-------------------C-SSSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhc-------------------c-ccchHHHHHHHHHHHH
Confidence 367899999999999999999998765 4455555432110 0 0011123345666666
Q ss_pred HHhcCCcEEEEeC
Q 012680 148 AKKKNVDVVIVDT 160 (458)
Q Consensus 148 ~~~~~~DvVIIDt 160 (458)
+.....-+|+||-
T Consensus 270 A~~~~P~IifiDE 282 (437)
T 4b4t_L 270 AKEHEPCIIFMDE 282 (437)
T ss_dssp HHHSCSEEEEEEC
T ss_pred HHhcCCceeeeec
Confidence 6656677888874
No 429
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.45 E-value=0.0055 Score=56.24 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=22.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
++.+++++|++||||||++..|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 56799999999999999998887654
No 430
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.44 E-value=0.012 Score=53.88 Aligned_cols=34 Identities=41% Similarity=0.665 Sum_probs=30.2
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEee
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 105 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd 105 (458)
.|++-|.-||||||.+..|+.+|.++|++|.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4677799999999999999999999999997553
No 431
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.43 E-value=0.0067 Score=54.95 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=25.5
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+|+++|.+||||||++..|+. + | +.++++|.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 3789999999999999988876 3 4 45667764
No 432
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.41 E-value=0.0085 Score=59.25 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=29.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
.+++|+++|++||||||++..||..+. ..++++|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP-----CELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccch
Confidence 356899999999999999999986542 578888853
No 433
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.35 E-value=0.021 Score=62.73 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=33.2
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
..++++|++|+|||++|..||..+...+..+..++|..+
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 379999999999999999999999777778887877533
No 434
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.34 E-value=0.0085 Score=56.28 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
+|.+|+++|++||||||++..|+..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998776
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.33 E-value=0.0082 Score=54.25 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=26.8
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+|+++|.+||||||++..|+..|. +.++|.|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-----~~~~d~d~ 35 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-----VPYLSSGL 35 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----Cceeccch
Confidence 899999999999999999987663 45678774
No 436
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.33 E-value=0.06 Score=49.80 Aligned_cols=34 Identities=41% Similarity=0.454 Sum_probs=26.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
...-|.++|..||||||++..|+ +.|. -++|+|.
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~----~~g~--~vidaD~ 41 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFA----ARGA--SLVDTDL 41 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHH----HTTC--EEEEHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHH----HCCC--cEEECcH
Confidence 35678999999999999996664 4464 5678885
No 437
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.31 E-value=0.01 Score=61.59 Aligned_cols=41 Identities=34% Similarity=0.443 Sum_probs=33.5
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
..+.+|+++|.+||||||++..|+..+...+..+..++.|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 35778999999999999999999999887776666666553
No 438
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.31 E-value=0.016 Score=57.98 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=17.4
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
.|+++|.+|+||||+...|.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 47889999999999998763
No 439
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.30 E-value=0.1 Score=48.49 Aligned_cols=124 Identities=19% Similarity=0.279 Sum_probs=59.7
Q ss_pred CeEEEeeccccccchhHhhHHHHH-HHhcCC--ceEEeeccccCchhhhHHhhhccccc----ccee-c---------CC
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANY-LKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVG----VPVY-T---------AG 132 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~-L~~~G~--kVllVd~D~~rp~a~~~l~~~~~~~g----v~v~-~---------~~ 132 (458)
...++++|+.||||||+...+... +...+. .+.++-..+.+..+...........+ ..+- . ..
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPH 155 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSS
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCC
Confidence 358899999999999877655443 233333 33444444555433222221211111 1100 0 00
Q ss_pred C---ccChHHHHHhhHHHHHhcCCcEEEEeCCccccccHHHH-HHHHHHHhhcCcceEEEEEeccchh
Q 012680 133 T---EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM-DELKDVKRVLNPTEVLLVVDAMTGQ 196 (458)
Q Consensus 133 ~---~~~~~~i~~~~l~~~~~~~~DvVIIDtpg~l~~d~~l~-~el~~l~~~~~~~~vllVvda~~g~ 196 (458)
. ...|. .+.+.+.. .-.+++++|||-+-....+.... ..+..+.... ++.-++++.|+...
T Consensus 156 ~~Ivv~Tpg-~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~ 220 (235)
T 3llm_A 156 ASIMFCTVG-VLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDT 220 (235)
T ss_dssp SEEEEEEHH-HHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCC
T ss_pred CeEEEECHH-HHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCH
Confidence 0 01222 22222322 23578999999986543333333 3444444443 34446666775543
No 440
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.27 E-value=0.0087 Score=53.79 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.6
Q ss_pred EEEeeccccccchhHhhHHHHHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
+|++.|.+||||||++..|+..|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 688999999999999999988774
No 441
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.26 E-value=0.0079 Score=53.78 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
+.++++++|++||||||++..|+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35699999999999999999987654
No 442
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.25 E-value=0.044 Score=57.57 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=29.7
Q ss_pred CCeEEEeeccccccchhHhhHHH-HHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA-~~L~~~G~kVllVd~D~ 108 (458)
+..+++++|++||||||++..++ ..+...+..++++++..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 46799999999999999999964 33444355577777643
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.24 E-value=0.016 Score=57.01 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=29.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.|++|+++|++||||||++..||..+ ..-+|.+|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 46899999999999999999998664 356788885
No 444
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.22 E-value=0.0073 Score=54.24 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
+++++++|++||||||++..|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45789999999999999999987665
No 445
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.20 E-value=0.014 Score=57.89 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=29.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
++.+|+++|+.||||||++..||..+ ..-+|++|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 45799999999999999999998543 3568999964
No 446
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.15 E-value=0.039 Score=54.29 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=25.1
Q ss_pred EEeeccccccchhHhhHHHHHHHhcCCceEEe
Q 012680 73 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 104 (458)
Q Consensus 73 I~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV 104 (458)
++++|++|+||||++..+|..+...+.++.++
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 88999999999999999998876544333333
No 447
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.14 E-value=0.0073 Score=54.55 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
++.+++++|++||||||++..|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999888665
No 448
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.11 E-value=0.053 Score=53.11 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=25.2
Q ss_pred eEeccCCCeEEEeeccccccchhHhhHHHHHHH
Q 012680 63 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 63 ~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
+++.=.+..+++++|++||||||+...|+..+.
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 344334567999999999999999988775443
No 449
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.09 E-value=0.011 Score=54.42 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=25.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
+.+|+++|++||||||++..|+..+ | +.++|.|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 4589999999999999998887654 3 3456655
No 450
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.06 E-value=0.039 Score=55.55 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=43.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.++.+++.|++|+|||+++..+|.. .+..+..++|....... . ......+...+..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~~l~~~~---------------~-----g~~~~~~~~~~~~a 203 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAASLTSKY---------------V-----GEGEKLVRALFAVA 203 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSCCC---------------------------CHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHHHhhccc---------------c-----chHHHHHHHHHHHH
Confidence 4678999999999999999888755 35666666653211100 0 00112334445555
Q ss_pred HhcCCcEEEEeCCccc
Q 012680 149 KKKNVDVVIVDTAGRL 164 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l 164 (458)
......+++||=.-.+
T Consensus 204 ~~~~~~il~iDEid~l 219 (389)
T 3vfd_A 204 RELQPSIIFIDQVDSL 219 (389)
T ss_dssp HHSSSEEEEEETGGGG
T ss_pred HhcCCeEEEEECchhh
Confidence 5456679999965443
No 451
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.05 E-value=0.0097 Score=56.33 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.7
Q ss_pred CeEEEeeccccccchhHhhHHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
|+-+++.|++|+||||++..+|..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4558899999999999999998765
No 452
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.02 E-value=0.077 Score=51.55 Aligned_cols=36 Identities=36% Similarity=0.530 Sum_probs=28.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.|.++++.|++|+||||++..++..+ +..+..+++.
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~ 82 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGS 82 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccc
Confidence 46788999999999999999998665 4556555543
No 453
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.00 E-value=0.012 Score=53.87 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=24.1
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.|+++|++||||||++..|+..+ |. .+++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY---EI--PHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--cEeeHH
Confidence 47889999999999999998765 43 445653
No 454
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.00 E-value=0.016 Score=57.75 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=27.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
++..+++.|++|+|||++|..||..+ +.....++|
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 45678999999999999999998776 455554544
No 455
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.98 E-value=0.022 Score=58.73 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=27.7
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
+++-+++.|++|+|||+++..+|..+ .+..+..+++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~ 201 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 201 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence 56789999999999999999998765 2444544444
No 456
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.96 E-value=0.056 Score=56.22 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=44.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.|+-++++|++|+||||++..+|..+ +.....+++..+.. . +. + ......+..+..+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~----------~------~~-g---~~~~~~r~lf~~A 104 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVE----------L------FV-G---VGAARVRDLFAQA 104 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTT----------C------CT-T---HHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHH----------H------Hh-c---ccHHHHHHHHHHH
Confidence 35568899999999999999998654 44444444321100 0 00 0 0122345556666
Q ss_pred HhcCCcEEEEeCCccc
Q 012680 149 KKKNVDVVIVDTAGRL 164 (458)
Q Consensus 149 ~~~~~DvVIIDtpg~l 164 (458)
......+++||=+..+
T Consensus 105 ~~~~p~ILfIDEid~l 120 (476)
T 2ce7_A 105 KAHAPCIVFIDEIDAV 120 (476)
T ss_dssp HHTCSEEEEEETGGGT
T ss_pred HhcCCCEEEEechhhh
Confidence 6567889999976443
No 457
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.95 E-value=0.012 Score=53.16 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
++.+++++|++||||||++..|+..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999887654
No 458
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.85 E-value=0.061 Score=54.68 Aligned_cols=34 Identities=35% Similarity=0.566 Sum_probs=28.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
+.+|+|+|++||||||++..||..+. ..+|++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 56899999999999999999998774 34788885
No 459
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.84 E-value=0.038 Score=58.45 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=29.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH--hcCC--ceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK--KQGK--SCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~--~~G~--kVllVd~D~~ 109 (458)
.++++.|+|++|+||||++..++.... ...+ .|..++++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 468999999999999999998875432 2222 3666665543
No 460
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.03 Score=57.00 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=43.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
+|+=+++.|+||+|||++|.++|..+ |.....+++...- . .........++..+..+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~-------------------s-k~vGese~~vr~lF~~A 237 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELV-------------------Q-KYIGEGSRMVRELFVMA 237 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGS-------------------C-SSTTHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhh-------------------c-cccchHHHHHHHHHHHH
Confidence 57889999999999999999998655 3444444432100 0 00111234456667777
Q ss_pred HhcCCcEEEEeC
Q 012680 149 KKKNVDVVIVDT 160 (458)
Q Consensus 149 ~~~~~DvVIIDt 160 (458)
+....-+|+||=
T Consensus 238 r~~aP~IIFiDE 249 (405)
T 4b4t_J 238 REHAPSIIFMDE 249 (405)
T ss_dssp HHTCSEEEEEES
T ss_pred HHhCCceEeeec
Confidence 666677888884
No 461
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.83 E-value=0.014 Score=53.39 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=24.0
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
.|+++|.+||||||++..|+..+ |.. +++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~--~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIP--QIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCC--EEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCe--EEeH
Confidence 47889999999999999998766 443 4555
No 462
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.81 E-value=0.028 Score=58.22 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=23.6
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHh
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKK 96 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~ 96 (458)
+..++++|++|+||||++..||..+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 446789999999999999999998865
No 463
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.79 E-value=0.022 Score=54.65 Aligned_cols=37 Identities=32% Similarity=0.508 Sum_probs=29.8
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+..++++|++|+|||+++..++..+ +..+..+++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 45678899999999999999999877 55667677653
No 464
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.78 E-value=0.016 Score=61.56 Aligned_cols=41 Identities=32% Similarity=0.596 Sum_probs=34.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhc-CCceEEeecccc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY 109 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~-G~kVllVd~D~~ 109 (458)
++.+++++|.+||||||++..|+..+... |..+.++|.|..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 46799999999999999999999998754 457878898843
No 465
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.73 E-value=0.023 Score=52.22 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=28.7
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEe
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 104 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllV 104 (458)
+.|++-|.-||||||.+..|+.+|. +|++|.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 5788889999999999999999996 58888754
No 466
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.72 E-value=0.067 Score=52.70 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=24.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK 96 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~ 96 (458)
.+..++++|++|+||||++..++..+..
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999987753
No 467
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.036 Score=56.75 Aligned_cols=70 Identities=21% Similarity=0.325 Sum_probs=43.9
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
.+|+=|++.|+||+|||++|.++|..+. .....+++.. + +. .........++..+..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~---~~fi~v~~s~--------l-----------~s-k~vGesek~ir~lF~~ 270 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS---ATFLRIVGSE--------L-----------IQ-KYLGDGPRLCRQIFKV 270 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT---CEEEEEESGG--------G-----------CC-SSSSHHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC---CCEEEEEHHH--------h-----------hh-ccCchHHHHHHHHHHH
Confidence 3578899999999999999999986653 4444444321 0 00 0011123455666666
Q ss_pred HHhcCCcEEEEeC
Q 012680 148 AKKKNVDVVIVDT 160 (458)
Q Consensus 148 ~~~~~~DvVIIDt 160 (458)
+.....-+|+||-
T Consensus 271 Ar~~aP~IIfiDE 283 (437)
T 4b4t_I 271 AGENAPSIVFIDE 283 (437)
T ss_dssp HHHTCSEEEEEEE
T ss_pred HHhcCCcEEEEeh
Confidence 6655667888874
No 468
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.69 E-value=0.02 Score=55.48 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.2
Q ss_pred CCeEEEeeccccccchhHhhHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA 91 (458)
...-|+++|.+|+||||+...+.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~ 176 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYT 176 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHH
T ss_pred ceeEEEEECCCCCChHHHHHHHH
Confidence 34568889999999999997775
No 469
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.67 E-value=0.013 Score=53.68 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=23.7
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.|+++|++||||||++..|+..+ | ..+++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---G--IPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---S--CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CcEEeHH
Confidence 47889999999999998887554 3 3456663
No 470
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.61 E-value=0.015 Score=53.33 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
++++++++|++|+||||++..|+..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 56799999999999999999887554
No 471
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.56 E-value=0.014 Score=53.05 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=22.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
++++++++|++|+||||+...|+..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356899999999999999999987653
No 472
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.54 E-value=0.039 Score=51.07 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=17.4
Q ss_pred EEEeeccccccchhHhhHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLA 91 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA 91 (458)
-|+++|.+|||||++...+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~ 34 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHH
Confidence 47888999999999997764
No 473
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.54 E-value=0.037 Score=52.29 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=33.4
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 111 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp 111 (458)
..++++|.+|+|||+++..++..+...+..+..++|..+..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 45888999999999999999887776677788888765543
No 474
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.52 E-value=0.042 Score=56.69 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.9
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
+|+-+++.|++|+|||++|..+|..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 457799999999999999999998864
No 475
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.51 E-value=0.018 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.0
Q ss_pred EEEeeccccccchhHhhHHHHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
+|++.|.+||||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 476
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.50 E-value=0.019 Score=54.09 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=27.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
.|.+|++.|++||||||++..|+..|. ..+++.|
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg-----~~~~d~g 41 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG-----ARYLDTG 41 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT-----CEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCcccCC
Confidence 467899999999999999999987663 3456665
No 477
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.46 E-value=0.039 Score=57.64 Aligned_cols=35 Identities=40% Similarity=0.567 Sum_probs=27.6
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
.++-+++.|++|+|||+++..++..+ +..+..++|
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~ 271 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 271 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEc
Confidence 56779999999999999998887654 556665654
No 478
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.045 Score=56.53 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=44.7
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 147 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~ 147 (458)
.+|+=|++.|+||+|||++|.++|..+ |.....+++... +. .........++..+..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L-------------------~s-k~vGesek~ir~lF~~ 297 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSEL-------------------VQ-KYVGEGARMVRELFEM 297 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG-------------------CC-CSSSHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHh-------------------hc-ccCCHHHHHHHHHHHH
Confidence 368899999999999999999998665 344444443210 00 0011123455666777
Q ss_pred HHhcCCcEEEEeC
Q 012680 148 AKKKNVDVVIVDT 160 (458)
Q Consensus 148 ~~~~~~DvVIIDt 160 (458)
+.....-+|+||-
T Consensus 298 Ar~~aP~IIfiDE 310 (467)
T 4b4t_H 298 ARTKKACIIFFDE 310 (467)
T ss_dssp HHHTCSEEEEEEC
T ss_pred HHhcCCceEeecc
Confidence 6666677888885
No 479
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.45 E-value=0.021 Score=55.43 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEee
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 105 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd 105 (458)
+++.+++.|++|+||||++..+|..+ +.....++
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 56789999999999999999998765 34444444
No 480
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.45 E-value=0.12 Score=57.09 Aligned_cols=36 Identities=39% Similarity=0.553 Sum_probs=28.3
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeec
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 106 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~ 106 (458)
.+|+-|++.|++|+|||+++.++|..+ |..+..|++
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~ 271 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 271 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEh
Confidence 468899999999999999998887543 555665554
No 481
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.38 E-value=0.019 Score=51.35 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=24.9
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.+++++|++||||||++..|+.. .+.. ..++.|.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~---~~g~-~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ---LDNS-AYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH---SSSE-EEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc---cCCe-EEEcccc
Confidence 47899999999999999999752 2222 4566663
No 482
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.37 E-value=0.021 Score=52.83 Aligned_cols=26 Identities=12% Similarity=0.419 Sum_probs=22.9
Q ss_pred CeEEEeeccccccchhHhhHHHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
.+.+++.|++|+||||+|.+||..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998873
No 483
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.36 E-value=0.065 Score=59.74 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=34.5
Q ss_pred eEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccC
Q 012680 71 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 110 (458)
Q Consensus 71 ~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~r 110 (458)
..++++|++|+|||++|..|+..+...+..+..++|..+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 5889999999999999999999998777788888876544
No 484
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.30 E-value=0.034 Score=51.16 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=26.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
..+.|+++|++|+||||++..|+ ++|. -+|..|
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdD 65 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV----QRGH--RLIADD 65 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence 46789999999999999997765 4565 566766
No 485
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.29 E-value=0.019 Score=53.68 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
+|.+|++.|..||||||++..|+.+|.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999988774
No 486
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.18 E-value=0.016 Score=53.75 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=17.5
Q ss_pred CCCeEEEeeccccccchhHhhHHH-HHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLA-NYL 94 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA-~~L 94 (458)
.++.+++++|++||||||++..|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356799999999999999998887 654
No 487
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.18 E-value=0.028 Score=52.38 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=28.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccc
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 108 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~ 108 (458)
.++.+|.++|.+||||||++..|+..| | +.++|.|.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l---g--~~~~d~d~ 49 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF---G--FTYLDTGA 49 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc---C--CceecCCC
Confidence 356789999999999999998887654 4 35677763
No 488
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.18 E-value=0.019 Score=52.52 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=26.4
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 107 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D 107 (458)
|.+|+++|.+||||||++..|+..+ | ..++|+|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d 35 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL---S--MIYVDTG 35 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---C--CceecCC
Confidence 5689999999999999998887654 4 3567776
No 489
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.16 E-value=0.14 Score=49.27 Aligned_cols=27 Identities=44% Similarity=0.537 Sum_probs=23.1
Q ss_pred EEEeeccccccchhHhhHHHHHHHhcC
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKKQG 98 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~~G 98 (458)
.++++|++|+||||++..++..+...+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 388999999999999999998876443
No 490
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.06 E-value=0.11 Score=57.04 Aligned_cols=37 Identities=35% Similarity=0.476 Sum_probs=29.8
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeecccc
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 109 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~ 109 (458)
...++++|++|+|||+++..||..+ |.....+++..+
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~ 524 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEY 524 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGC
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhh
Confidence 3578999999999999999999888 566666776533
No 491
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.00 E-value=0.11 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=18.7
Q ss_pred EEEeeccccccchhHhhHHHHH
Q 012680 72 VILLAGLQGVGKTTVSAKLANY 93 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~ 93 (458)
.++++|.+|+||||+...|...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3788999999999999888643
No 492
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.00 E-value=0.051 Score=58.45 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=29.5
Q ss_pred EEEeeccccccchhHhhHHHHHHHh-cCCceEEee
Q 012680 72 VILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVA 105 (458)
Q Consensus 72 iI~i~G~~GsGKTT~a~~LA~~L~~-~G~kVllVd 105 (458)
+.++.|++|+||||++..++..+.+ .+.+|+++.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 6788999999999999999998886 678888665
No 493
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.99 E-value=0.15 Score=52.43 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=56.1
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 148 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~ 148 (458)
.-++.++.|.+|+||||+..+++.. .+++++. +.+.+ .+.+.......+... ......... ...+...
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~-----~~~lVlT--pT~~a-a~~l~~kl~~~~~~~-~~~~~V~T~---dsfL~~~ 227 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF-----EEDLILV--PGRQA-AEMIRRRANASGIIV-ATKDNVRTV---DSFLMNY 227 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT-----TTCEEEE--SCHHH-HHHHHHHHTTTSCCC-CCTTTEEEH---HHHHHTT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc-----CCeEEEe--CCHHH-HHHHHHHhhhcCccc-cccceEEEe---HHhhcCC
Confidence 4579999999999999999887632 4566665 33333 233332211111100 000000111 1111111
Q ss_pred Hhc---CCcEEEEeCCccccccHHHHHHHHHHHhhcCcceEEEEEec
Q 012680 149 KKK---NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 192 (458)
Q Consensus 149 ~~~---~~DvVIIDtpg~l~~d~~l~~el~~l~~~~~~~~vllVvda 192 (458)
... .+|++|||=...++ ...+. .+.....+..++++-|.
T Consensus 228 ~~~~~~~~d~liiDE~sm~~--~~~l~---~l~~~~~~~~vilvGD~ 269 (446)
T 3vkw_A 228 GKGARCQFKRLFIDEGLMLH--TGCVN---FLVEMSLCDIAYVYGDT 269 (446)
T ss_dssp TSSCCCCCSEEEEETGGGSC--HHHHH---HHHHHTTCSEEEEEECT
T ss_pred CCCCCCcCCEEEEeCcccCC--HHHHH---HHHHhCCCCEEEEecCc
Confidence 111 28999999887664 22332 23344556778888887
No 494
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.97 E-value=0.025 Score=53.49 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=22.2
Q ss_pred CCeEEEeeccccccchhHhhHHHHHH
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
++.+|+++|++||||||++..||..|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999998887554
No 495
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.93 E-value=0.075 Score=59.26 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-------cCCceEEeec
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG 106 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-------~G~kVllVd~ 106 (458)
.+..++++|++|+||||++..||..+.. .|.++..+++
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 3456789999999999999999998865 3666666665
No 496
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.89 E-value=0.13 Score=54.75 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=23.2
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
.+..+++++|++||||||+...|+..+.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4567999999999999999988875544
No 497
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.87 E-value=0.021 Score=52.80 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.1
Q ss_pred CCCeEEEeeccccccchhHhhHHHHHH
Q 012680 68 SRPTVILLAGLQGVGKTTVSAKLANYL 94 (458)
Q Consensus 68 ~~p~iI~i~G~~GsGKTT~a~~LA~~L 94 (458)
.++.+++++|++||||||++..|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356789999999999999999998765
No 498
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.85 E-value=0.067 Score=52.86 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=45.8
Q ss_pred CeEEEeeccccccchhHhhHHHHHHHhcCCceEEeeccccCchhhhHHhhhccccccceecCCCccChHHHHHhhHHHHH
Q 012680 70 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 149 (458)
Q Consensus 70 p~iI~i~G~~GsGKTT~a~~LA~~L~~~G~kVllVd~D~~rp~a~~~l~~~~~~~gv~v~~~~~~~~~~~i~~~~l~~~~ 149 (458)
..+++++|++||||||+...|+..+......|.+-+.+.+... .+ ...+.++. + .....+.++..+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~------~~--~~~i~~~~-g----gg~~~r~~la~aL 237 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK------HH--KNYTQLFF-G----GNITSADCLKSCL 237 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS------SC--SSEEEEEC-B----TTBCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc------cc--hhEEEEEe-C----CChhHHHHHHHHh
Confidence 4589999999999999998888766543334443332211110 01 11122221 1 1112234455555
Q ss_pred hcCCcEEEEeCCcc
Q 012680 150 KKNVDVVIVDTAGR 163 (458)
Q Consensus 150 ~~~~DvVIIDtpg~ 163 (458)
..+.|++|+|=|..
T Consensus 238 ~~~p~ilildE~~~ 251 (330)
T 2pt7_A 238 RMRPDRIILGELRS 251 (330)
T ss_dssp TSCCSEEEECCCCS
T ss_pred hhCCCEEEEcCCCh
Confidence 57899999997764
No 499
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.78 E-value=0.13 Score=49.07 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=25.1
Q ss_pred eEeccCCCeEEEeeccccccchhHhhHHHHHHH
Q 012680 63 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK 95 (458)
Q Consensus 63 ~~~~~~~p~iI~i~G~~GsGKTT~a~~LA~~L~ 95 (458)
++++=.+..++.++|++||||||+...|+-.+.
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 333334567999999999999999988875443
No 500
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.73 E-value=0.1 Score=59.61 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=28.5
Q ss_pred CCeEEEeeccccccchhHhhHHHHHHHh-c---CCceEEeecc
Q 012680 69 RPTVILLAGLQGVGKTTVSAKLANYLKK-Q---GKSCMLVAGD 107 (458)
Q Consensus 69 ~p~iI~i~G~~GsGKTT~a~~LA~~L~~-~---G~kVllVd~D 107 (458)
.++++.++|++|+||||+|..++..... . ...|..++..
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 5789999999999999999888765432 1 2245566654
Done!