Query 012682
Match_columns 458
No_of_seqs 350 out of 1228
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01989 STK_N The N-terminal d 100.0 1.5E-27 3.2E-32 213.0 18.1 146 16-178 1-146 (146)
2 PRK15456 universal stress prot 99.9 3E-23 6.5E-28 185.0 16.4 139 14-176 2-142 (142)
3 PRK15005 universal stress prot 99.9 1.4E-22 3.1E-27 180.2 16.1 141 14-176 2-144 (144)
4 PRK09982 universal stress prot 99.9 1.6E-21 3.5E-26 174.4 13.6 138 14-178 3-140 (142)
5 PRK15118 universal stress glob 99.9 4E-21 8.6E-26 171.4 13.2 138 13-177 2-139 (144)
6 PF00582 Usp: Universal stress 99.8 1.8E-20 4E-25 161.9 14.0 139 14-176 2-140 (140)
7 cd01988 Na_H_Antiporter_C The 99.8 6.5E-20 1.4E-24 159.6 16.3 132 16-176 1-132 (132)
8 cd01987 USP_OKCHK USP domain i 99.8 9.9E-20 2.1E-24 157.9 13.9 123 16-176 1-124 (124)
9 PRK10116 universal stress prot 99.8 1.4E-19 3.1E-24 160.6 14.5 138 13-177 2-139 (142)
10 PRK11175 universal stress prot 99.8 5.5E-19 1.2E-23 176.5 15.4 146 13-178 2-147 (305)
11 PRK11175 universal stress prot 99.8 1.2E-17 2.5E-22 166.9 15.4 144 12-178 150-301 (305)
12 cd00293 USP_Like Usp: Universa 99.7 2.5E-16 5.4E-21 134.7 15.6 130 16-175 1-130 (130)
13 COG0589 UspA Universal stress 99.7 6E-16 1.3E-20 137.2 16.8 147 13-178 4-153 (154)
14 PRK12652 putative monovalent c 99.4 3.4E-12 7.5E-17 130.8 14.6 107 11-145 2-123 (357)
15 PRK10490 sensor protein KdpD; 99.1 9.6E-10 2.1E-14 125.7 16.4 128 12-178 248-375 (895)
16 COG2205 KdpD Osmosensitive K+ 99.0 4.4E-09 9.4E-14 115.0 14.7 139 10-185 244-382 (890)
17 cd01984 AANH_like Adenine nucl 98.0 2.3E-05 5.1E-10 63.6 7.9 85 17-174 1-85 (86)
18 PLN03159 cation/H(+) antiporte 96.6 0.018 3.8E-07 66.0 12.2 155 9-179 453-618 (832)
19 TIGR02432 lysidine_TilS_N tRNA 96.2 0.066 1.4E-06 49.8 11.9 95 16-147 1-111 (189)
20 PF01171 ATP_bind_3: PP-loop f 94.9 0.37 8E-06 44.7 11.5 93 16-145 1-106 (182)
21 cd01992 PP-ATPase N-terminal d 94.8 0.28 6.1E-06 45.2 10.5 95 16-147 1-108 (185)
22 cd01993 Alpha_ANH_like_II This 91.9 1.9 4.2E-05 39.4 10.8 38 16-54 1-40 (185)
23 PLN03159 cation/H(+) antiporte 91.7 3.5 7.6E-05 47.6 14.9 151 14-179 630-796 (832)
24 PRK10696 tRNA 2-thiocytidine b 91.7 2.7 6E-05 41.3 12.3 96 12-146 27-142 (258)
25 cd07653 F-BAR_CIP4-like The F- 89.4 3.6 7.7E-05 40.1 10.7 82 325-406 115-196 (251)
26 PRK09510 tolA cell envelope in 89.0 16 0.00035 38.3 15.5 13 348-360 116-128 (387)
27 PF09726 Macoilin: Transmembra 88.8 7.6 0.00016 43.9 13.9 18 322-339 418-435 (697)
28 PLN03086 PRLI-interacting fact 88.4 2 4.4E-05 47.0 8.8 32 389-420 35-66 (567)
29 COG0037 MesJ tRNA(Ile)-lysidin 88.0 4.6 0.0001 40.1 10.7 39 14-55 21-59 (298)
30 TIGR00268 conserved hypothetic 87.7 5.6 0.00012 39.0 10.8 36 13-53 11-46 (252)
31 PTZ00121 MAEBL; Provisional 85.9 14 0.00031 44.3 14.0 21 7-27 86-107 (2084)
32 KOG0994 Extracellular matrix g 84.9 14 0.00031 43.3 13.2 93 319-411 1616-1716(1758)
33 PRK13820 argininosuccinate syn 82.9 14 0.0003 39.0 11.5 38 13-53 1-38 (394)
34 KOG0163 Myosin class VI heavy 81.0 37 0.00079 38.5 14.0 21 401-421 966-986 (1259)
35 PRK12342 hypothetical protein; 79.8 21 0.00046 35.3 11.0 88 22-148 32-122 (254)
36 PTZ00121 MAEBL; Provisional 79.1 37 0.00081 41.1 13.9 31 4-34 664-697 (2084)
37 cd01990 Alpha_ANH_like_I This 79.0 20 0.00043 33.5 10.3 33 17-53 1-33 (202)
38 PF06364 DUF1068: Protein of u 77.5 23 0.0005 32.7 9.5 48 371-418 103-155 (176)
39 PRK05253 sulfate adenylyltrans 77.4 9.9 0.00021 38.6 8.1 40 13-53 26-65 (301)
40 cd07654 F-BAR_FCHSD The F-BAR 75.7 35 0.00076 33.9 11.3 38 324-361 119-156 (264)
41 PF05262 Borrelia_P83: Borreli 75.2 43 0.00094 36.3 12.5 10 135-144 66-75 (489)
42 COG1842 PspA Phage shock prote 75.2 84 0.0018 30.5 15.3 92 322-415 31-137 (225)
43 PF07946 DUF1682: Protein of u 75.2 12 0.00026 38.2 8.1 85 330-414 229-317 (321)
44 cd07657 F-BAR_Fes_Fer The F-BA 74.8 34 0.00073 33.5 10.8 83 324-406 114-196 (237)
45 PTZ00491 major vault protein; 73.2 45 0.00097 38.4 12.4 44 401-447 765-808 (850)
46 PF05917 DUF874: Helicobacter 73.0 40 0.00087 33.8 10.6 81 349-429 133-213 (398)
47 COG3064 TolA Membrane protein 72.8 61 0.0013 33.0 11.9 13 398-410 177-189 (387)
48 PF00769 ERM: Ezrin/radixin/mo 72.4 72 0.0016 31.3 12.5 32 332-363 8-39 (246)
49 KOG2357 Uncharacterized conser 71.4 13 0.00027 39.1 7.1 65 350-421 359-423 (440)
50 PLN00200 argininosuccinate syn 71.0 54 0.0012 34.7 11.9 37 14-54 5-41 (404)
51 KOG4722 Zn-finger protein [Gen 70.9 48 0.001 35.0 11.1 82 336-417 365-449 (672)
52 PF09726 Macoilin: Transmembra 70.1 50 0.0011 37.5 12.1 28 325-352 548-575 (697)
53 cd07656 F-BAR_srGAP The F-BAR 69.8 67 0.0015 31.5 11.6 41 325-365 120-160 (241)
54 KOG4661 Hsp27-ERE-TATA-binding 69.6 25 0.00055 38.3 9.0 71 363-433 619-690 (940)
55 TIGR00342 thiazole biosynthesi 69.5 50 0.0011 34.4 11.3 40 9-53 167-206 (371)
56 PF02887 PK_C: Pyruvate kinase 69.3 8 0.00017 33.1 4.5 48 123-181 4-51 (117)
57 KOG0994 Extracellular matrix g 68.7 1.3E+02 0.0028 36.0 14.7 38 324-361 1417-1454(1758)
58 PRK06569 F0F1 ATP synthase sub 67.0 76 0.0017 29.1 10.5 8 441-448 112-119 (155)
59 cd01712 ThiI ThiI is required 66.9 90 0.002 28.4 11.4 34 16-54 1-34 (177)
60 KOG2072 Translation initiation 66.9 1.1E+02 0.0023 35.2 13.4 58 348-405 585-642 (988)
61 KOG4807 F-actin binding protei 66.8 42 0.00092 35.1 9.6 81 325-405 301-406 (593)
62 TIGR00591 phr2 photolyase PhrI 66.7 49 0.0011 35.2 10.8 87 26-144 36-122 (454)
63 PF10174 Cast: RIM-binding pro 66.5 1.3E+02 0.0028 34.6 14.4 106 324-429 366-486 (775)
64 KOG0161 Myosin class II heavy 66.1 89 0.0019 39.5 13.8 81 326-410 1467-1547(1930)
65 PRK10660 tilS tRNA(Ile)-lysidi 65.6 30 0.00065 36.9 8.9 42 12-54 13-55 (436)
66 TIGR00032 argG argininosuccina 65.0 58 0.0013 34.3 10.7 33 16-53 1-33 (394)
67 KOG4001 Axonemal dynein light 64.8 1.2E+02 0.0025 29.1 11.3 66 333-398 153-219 (259)
68 KOG0646 WD40 repeat protein [G 64.6 12 0.00026 39.7 5.4 39 324-362 430-468 (476)
69 PRK00509 argininosuccinate syn 64.3 90 0.0019 33.0 11.9 37 14-54 2-38 (399)
70 cd01995 ExsB ExsB is a transcr 64.1 74 0.0016 28.6 10.1 33 16-53 1-33 (169)
71 cd01986 Alpha_ANH_like Adenine 64.0 64 0.0014 26.6 8.9 33 17-54 1-33 (103)
72 PF00875 DNA_photolyase: DNA p 63.5 37 0.00079 30.6 7.9 78 96-181 52-129 (165)
73 PRK03359 putative electron tra 63.4 38 0.00082 33.5 8.5 88 23-148 34-125 (256)
74 cd01713 PAPS_reductase This do 63.0 89 0.0019 27.3 10.3 35 16-52 1-35 (173)
75 PF05701 WEMBL: Weak chloropla 62.3 1.3E+02 0.0028 33.0 13.1 26 325-350 312-337 (522)
76 PF12824 MRP-L20: Mitochondria 61.1 21 0.00046 32.9 5.9 16 321-337 85-100 (164)
77 TIGR02039 CysD sulfate adenyly 60.9 48 0.001 33.5 8.8 39 14-53 19-57 (294)
78 cd01996 Alpha_ANH_like_III Thi 60.6 1.1E+02 0.0023 27.1 10.3 33 16-52 3-35 (154)
79 KOG2072 Translation initiation 60.5 89 0.0019 35.8 11.3 7 349-355 758-764 (988)
80 cd07680 F-BAR_PACSIN1 The F-BA 60.5 71 0.0015 31.7 9.8 80 325-404 115-201 (258)
81 PF05546 She9_MDM33: She9 / Md 60.5 1.6E+02 0.0035 28.2 12.8 58 324-381 41-102 (207)
82 TIGR00884 guaA_Cterm GMP synth 59.3 1.4E+02 0.0031 30.3 12.0 36 15-54 17-52 (311)
83 COG2086 FixA Electron transfer 59.0 45 0.00098 33.1 8.1 88 20-147 32-123 (260)
84 cd07647 F-BAR_PSTPIP The F-BAR 58.5 1.4E+02 0.003 29.0 11.4 83 325-409 102-191 (239)
85 PF10211 Ax_dynein_light: Axon 58.4 1.6E+02 0.0036 27.6 14.3 32 331-362 86-118 (189)
86 COG1606 ATP-utilizing enzymes 57.7 1.3E+02 0.0027 30.0 10.7 36 15-54 18-53 (269)
87 PRK14665 mnmA tRNA-specific 2- 57.2 1.7E+02 0.0036 30.5 12.4 36 13-53 4-39 (360)
88 cd07671 F-BAR_PSTPIP1 The F-BA 55.8 1.7E+02 0.0038 28.6 11.6 83 325-409 102-191 (242)
89 PF06730 FAM92: FAM92 protein; 55.8 1.3E+02 0.0029 29.1 10.4 86 324-409 81-167 (219)
90 PF05262 Borrelia_P83: Borreli 55.2 2.8E+02 0.0062 30.2 13.9 11 45-55 50-60 (489)
91 PF00448 SRP54: SRP54-type pro 55.0 80 0.0017 29.7 8.9 114 16-175 4-120 (196)
92 PF12128 DUF3584: Protein of u 54.8 3.2E+02 0.007 33.1 15.9 27 325-351 603-629 (1201)
93 TIGR03556 photolyase_8HDF deox 54.8 93 0.002 33.5 10.4 46 96-144 54-99 (471)
94 KOG0161 Myosin class II heavy 54.6 2.3E+02 0.005 36.0 14.5 100 325-428 1065-1170(1930)
95 PF02844 GARS_N: Phosphoribosy 54.3 11 0.00025 31.8 2.6 37 121-164 48-84 (100)
96 cd01994 Alpha_ANH_like_IV This 53.9 1.2E+02 0.0026 28.5 9.8 34 16-54 1-34 (194)
97 COG4942 Membrane-bound metallo 53.1 2.2E+02 0.0048 30.3 12.4 89 326-414 175-271 (420)
98 cd01997 GMP_synthase_C The C-t 53.1 1.8E+02 0.0038 29.4 11.4 35 16-54 1-35 (295)
99 KOG0288 WD40 repeat protein Ti 53.0 1.2E+02 0.0025 32.2 10.1 22 324-345 50-71 (459)
100 TIGR02113 coaC_strep phosphopa 52.3 48 0.001 30.8 6.8 42 135-176 76-119 (177)
101 KOG4403 Cell surface glycoprot 51.7 2.2E+02 0.0048 30.4 11.8 74 325-402 249-322 (575)
102 PF14943 MRP-S26: Mitochondria 51.5 2E+02 0.0044 26.7 13.7 117 325-441 34-161 (170)
103 cd07678 F-BAR_FCHSD1 The F-BAR 51.5 1.6E+02 0.0035 29.3 10.6 41 324-364 118-158 (263)
104 PRK04863 mukB cell division pr 51.3 5.7E+02 0.012 32.0 17.1 14 439-452 435-448 (1486)
105 KOG4364 Chromatin assembly fac 49.9 3E+02 0.0064 31.1 12.9 22 415-436 353-374 (811)
106 KOG2077 JNK/SAPK-associated pr 49.6 3.2E+02 0.0069 30.3 12.9 93 326-420 298-418 (832)
107 cd07655 F-BAR_PACSIN The F-BAR 49.4 1.9E+02 0.0041 28.4 10.9 83 324-406 114-203 (258)
108 PF06409 NPIP: Nuclear pore co 49.1 1.3E+02 0.0029 29.3 9.1 50 325-376 94-146 (265)
109 KOG2891 Surface glycoprotein [ 48.4 2.7E+02 0.0058 28.0 11.3 51 328-378 284-352 (445)
110 cd02067 B12-binding B12 bindin 48.3 85 0.0018 26.5 7.3 66 105-175 22-87 (119)
111 TIGR01162 purE phosphoribosyla 48.3 70 0.0015 29.4 6.9 67 100-177 15-84 (156)
112 PRK00919 GMP synthase subunit 48.2 2.5E+02 0.0053 28.6 11.6 36 15-54 22-57 (307)
113 PF04007 DUF354: Protein of un 47.7 23 0.00051 36.4 4.2 81 98-184 15-97 (335)
114 PRK04527 argininosuccinate syn 47.4 2.5E+02 0.0054 29.8 11.8 36 14-54 2-37 (400)
115 KOG1144 Translation initiation 47.1 1.2E+02 0.0025 34.9 9.5 20 400-419 260-279 (1064)
116 PRK14664 tRNA-specific 2-thiou 47.0 2.1E+02 0.0046 29.8 11.2 34 14-52 5-38 (362)
117 PF10458 Val_tRNA-synt_C: Valy 46.8 73 0.0016 24.5 6.0 18 326-343 1-18 (66)
118 TIGR00289 conserved hypothetic 46.6 2.7E+02 0.0058 27.0 11.1 93 16-146 2-96 (222)
119 PF09388 SpoOE-like: Spo0E lik 46.3 24 0.00053 25.1 2.9 36 327-362 2-37 (45)
120 TIGR02765 crypto_DASH cryptoch 46.1 1.1E+02 0.0025 32.1 9.3 47 96-145 60-106 (429)
121 PF00731 AIRC: AIR carboxylase 46.1 57 0.0012 29.7 6.0 67 99-176 16-85 (150)
122 PF12107 VEK-30: Plasminogen ( 45.7 19 0.00041 20.4 1.7 10 328-337 2-11 (17)
123 KOG1029 Endocytic adaptor prot 45.4 5.4E+02 0.012 29.8 14.6 37 326-362 326-362 (1118)
124 cd07679 F-BAR_PACSIN2 The F-BA 45.2 1.4E+02 0.0031 29.7 9.0 81 325-405 115-202 (258)
125 PF10186 Atg14: UV radiation r 43.4 3.2E+02 0.007 26.6 15.3 77 330-406 21-105 (302)
126 PRK00074 guaA GMP synthase; Re 43.2 2.1E+02 0.0046 31.2 10.9 35 15-53 216-250 (511)
127 PRK09722 allulose-6-phosphate 43.1 58 0.0013 31.7 6.0 43 100-144 157-199 (229)
128 COG0552 FtsY Signal recognitio 43.1 2.1E+02 0.0045 29.6 10.0 122 9-175 135-264 (340)
129 cd01985 ETF The electron trans 43.0 2.2E+02 0.0047 26.0 9.7 57 124-186 80-138 (181)
130 PRK14561 hypothetical protein; 42.8 2.2E+02 0.0048 26.6 9.8 31 16-52 2-32 (194)
131 cd07658 F-BAR_NOSTRIN The F-BA 42.5 2.5E+02 0.0054 27.3 10.4 35 325-359 105-146 (239)
132 cd07676 F-BAR_FBP17 The F-BAR 42.5 2.3E+02 0.0049 27.9 10.1 78 328-405 120-197 (253)
133 COG1422 Predicted membrane pro 42.0 41 0.0009 32.0 4.5 31 325-356 69-99 (201)
134 KOG2412 Nuclear-export-signal 41.9 5.1E+02 0.011 28.5 13.2 19 325-343 160-178 (591)
135 COG4741 Predicted secreted end 41.6 1.9E+02 0.004 26.6 8.3 35 366-400 44-78 (175)
136 KOG1363 Predicted regulator of 41.5 87 0.0019 33.8 7.5 11 439-449 418-428 (460)
137 PF01012 ETF: Electron transfe 41.4 1.8E+02 0.0038 26.1 8.7 81 24-147 14-102 (164)
138 PTZ00266 NIMA-related protein 40.6 1.6E+02 0.0035 35.0 10.0 14 9-22 21-34 (1021)
139 PRK12858 tagatose 1,6-diphosph 40.5 4.3E+02 0.0094 27.3 12.5 132 15-179 84-251 (340)
140 PRK00143 mnmA tRNA-specific 2- 40.4 4E+02 0.0086 27.4 12.0 35 15-54 1-35 (346)
141 KOG1029 Endocytic adaptor prot 40.3 3.1E+02 0.0067 31.6 11.4 6 333-338 324-329 (1118)
142 TIGR00420 trmU tRNA (5-methyla 40.3 3.5E+02 0.0076 28.0 11.6 33 15-52 1-33 (352)
143 cd07675 F-BAR_FNBP1L The F-BAR 40.3 3.8E+02 0.0082 26.5 12.0 73 329-401 120-192 (252)
144 PRK08745 ribulose-phosphate 3- 39.8 56 0.0012 31.6 5.3 43 100-144 159-201 (223)
145 PRK08091 ribulose-phosphate 3- 39.7 56 0.0012 31.8 5.3 42 101-144 168-209 (228)
146 KOG0971 Microtubule-associated 39.3 3.3E+02 0.0071 31.9 11.6 47 330-376 256-309 (1243)
147 PRK13982 bifunctional SbtC-lik 39.0 91 0.002 33.8 7.2 41 136-178 147-189 (475)
148 PRK14974 cell division protein 39.0 2.9E+02 0.0062 28.5 10.6 70 104-176 189-261 (336)
149 KOG1962 B-cell receptor-associ 38.7 80 0.0017 30.5 6.0 54 322-375 151-207 (216)
150 smart00224 GGL G protein gamma 38.6 33 0.00071 26.4 2.8 29 325-353 2-30 (63)
151 PRK10867 signal recognition pa 38.6 4.9E+02 0.011 27.8 12.6 98 14-153 101-201 (433)
152 KOG1187 Serine/threonine prote 38.4 16 0.00035 37.9 1.4 19 439-457 65-83 (361)
153 KOG2002 TPR-containing nuclear 38.2 3.1E+02 0.0068 32.2 11.4 20 408-427 851-870 (1018)
154 PRK14057 epimerase; Provisiona 38.0 69 0.0015 31.7 5.6 42 101-144 182-223 (254)
155 PRK05370 argininosuccinate syn 37.9 3.3E+02 0.0071 29.3 10.9 32 122-153 109-140 (447)
156 TIGR03573 WbuX N-acetyl sugar 37.7 3.1E+02 0.0066 28.2 10.7 35 15-53 60-94 (343)
157 KOG3866 DNA-binding protein of 37.6 2.2E+02 0.0048 29.1 9.0 93 329-421 109-206 (442)
158 TIGR00364 exsB protein. This p 37.4 3.4E+02 0.0074 25.2 10.3 31 17-52 1-31 (201)
159 KOG4326 Mitochondrial F1F0-ATP 37.1 1.2E+02 0.0027 24.1 5.7 36 372-409 30-65 (81)
160 KOG4119 G protein gamma subuni 37.1 69 0.0015 25.5 4.4 30 324-353 9-38 (71)
161 cd07672 F-BAR_PSTPIP2 The F-BA 37.0 4.1E+02 0.0088 25.9 11.3 84 325-410 103-193 (240)
162 KOG0163 Myosin class VI heavy 36.6 7.3E+02 0.016 28.8 14.2 21 98-118 489-509 (1259)
163 PRK12563 sulfate adenylyltrans 36.4 1.6E+02 0.0034 30.2 8.1 47 5-52 28-74 (312)
164 KOG3054 Uncharacterized conser 36.0 3.6E+02 0.0079 26.7 9.9 6 335-340 110-115 (299)
165 PF13935 Ead_Ea22: Ead/Ea22-li 35.9 1.8E+02 0.0038 25.9 7.5 16 396-411 124-139 (139)
166 PF00631 G-gamma: GGL domain; 35.8 44 0.00096 25.9 3.2 32 324-355 4-35 (68)
167 cd07656 F-BAR_srGAP The F-BAR 35.6 4.3E+02 0.0094 25.8 11.5 57 325-381 106-162 (241)
168 TIGR01425 SRP54_euk signal rec 35.6 5.4E+02 0.012 27.5 12.3 97 16-155 103-202 (429)
169 PRK01565 thiamine biosynthesis 34.8 5.6E+02 0.012 26.9 12.3 40 9-53 171-210 (394)
170 cd00068 GGL G protein gamma su 34.6 50 0.0011 24.9 3.2 29 325-353 2-30 (57)
171 COG0036 Rpe Pentose-5-phosphat 34.4 97 0.0021 30.1 5.8 41 100-143 158-198 (220)
172 COG0041 PurE Phosphoribosylcar 34.3 2E+02 0.0043 26.4 7.4 63 103-176 22-87 (162)
173 cd01999 Argininosuccinate_Synt 34.2 3.7E+02 0.0081 28.2 10.7 34 17-54 1-34 (385)
174 PRK01269 tRNA s(4)U8 sulfurtra 34.0 4.1E+02 0.0089 28.7 11.3 40 9-53 172-211 (482)
175 PRK08349 hypothetical protein; 33.8 3.9E+02 0.0085 24.8 10.8 34 15-53 1-34 (198)
176 COG2268 Uncharacterized protei 33.6 7E+02 0.015 27.6 13.4 20 407-426 434-453 (548)
177 PF04518 Effector_1: Effector 33.0 1.1E+02 0.0023 32.2 6.3 62 380-444 198-261 (379)
178 PF02310 B12-binding: B12 bind 32.5 2.3E+02 0.0051 23.5 7.5 38 105-144 23-60 (121)
179 PLN02316 synthase/transferase 32.3 1.1E+02 0.0025 36.3 7.1 12 404-415 290-301 (1036)
180 PRK00109 Holliday junction res 32.3 63 0.0014 28.8 4.0 51 123-177 42-97 (138)
181 PHA03155 hypothetical protein; 32.1 1.3E+02 0.0029 26.0 5.6 23 321-343 7-29 (115)
182 KOG2891 Surface glycoprotein [ 32.0 5.4E+02 0.012 25.9 10.9 21 338-358 290-310 (445)
183 TIGR00959 ffh signal recogniti 31.9 6.3E+02 0.014 26.9 12.1 97 13-151 99-198 (428)
184 cd07684 F-BAR_srGAP3 The F-BAR 31.7 5.2E+02 0.011 25.6 10.7 34 330-363 127-160 (253)
185 KOG2606 OTU (ovarian tumor)-li 31.7 1.4E+02 0.0029 30.3 6.5 34 325-358 15-48 (302)
186 KOG1467 Translation initiation 31.7 4.6E+02 0.01 28.6 10.7 68 107-184 407-476 (556)
187 PF12128 DUF3584: Protein of u 31.5 1E+03 0.022 28.9 15.4 30 329-358 621-650 (1201)
188 KOG1466 Translation initiation 31.3 1.4E+02 0.0031 29.8 6.4 60 108-178 179-241 (313)
189 PF05812 Herpes_BLRF2: Herpesv 31.3 1.8E+02 0.0039 25.4 6.4 44 323-366 4-54 (118)
190 TIGR00511 ribulose_e2b2 ribose 31.2 1.4E+02 0.003 30.3 6.7 60 107-178 163-226 (301)
191 COG2102 Predicted ATPases of P 31.2 5E+02 0.011 25.2 10.6 92 16-145 2-96 (223)
192 PF12325 TMF_TATA_bd: TATA ele 31.1 3.6E+02 0.0078 23.6 8.5 41 319-359 13-53 (120)
193 TIGR01069 mutS2 MutS2 family p 31.0 5.9E+02 0.013 29.4 12.4 17 122-138 271-287 (771)
194 KOG2412 Nuclear-export-signal 31.0 7.3E+02 0.016 27.4 12.1 18 324-341 166-183 (591)
195 TIGR00273 iron-sulfur cluster- 30.9 1.4E+02 0.003 31.9 7.0 60 84-144 38-97 (432)
196 PF01008 IF-2B: Initiation fac 30.9 85 0.0018 31.0 5.1 61 108-178 156-219 (282)
197 cd07649 F-BAR_GAS7 The F-BAR ( 30.7 5.1E+02 0.011 25.2 12.5 34 325-358 103-143 (233)
198 PF11559 ADIP: Afadin- and alp 30.6 3.9E+02 0.0084 23.7 12.0 70 323-396 53-122 (151)
199 PHA03162 hypothetical protein; 30.5 2.1E+02 0.0045 25.5 6.7 23 322-344 13-35 (135)
200 KOG1003 Actin filament-coating 30.2 4.9E+02 0.011 24.9 11.4 35 328-362 3-37 (205)
201 KOG2417 Predicted G-protein co 30.2 4.1E+02 0.0088 27.8 9.7 19 328-346 185-203 (462)
202 PRK14471 F0F1 ATP synthase sub 30.1 4.1E+02 0.009 23.9 11.8 21 330-350 50-70 (164)
203 cd03364 TOPRIM_DnaG_primases T 29.5 1.1E+02 0.0024 24.0 4.6 30 14-43 43-72 (79)
204 TIGR00250 RNAse_H_YqgF RNAse H 29.4 1.3E+02 0.0027 26.5 5.4 54 121-178 34-92 (130)
205 KOG2689 Predicted ubiquitin re 29.4 2.9E+02 0.0062 27.8 8.2 15 410-424 156-170 (290)
206 cd01714 ETF_beta The electron 29.2 96 0.0021 29.3 4.9 61 123-186 96-158 (202)
207 PRK13337 putative lipid kinase 29.2 2.2E+02 0.0049 28.4 7.9 68 103-178 25-92 (304)
208 PF12777 MT: Microtubule-bindi 29.0 4.5E+02 0.0097 27.0 10.2 29 325-353 11-39 (344)
209 PTZ00323 NAD+ synthase; Provis 28.8 6.2E+02 0.013 25.6 11.9 42 13-54 45-86 (294)
210 cd01998 tRNA_Me_trans tRNA met 28.7 6.6E+02 0.014 25.8 11.8 33 16-53 1-33 (349)
211 PRK11914 diacylglycerol kinase 28.6 2.6E+02 0.0056 27.9 8.2 65 104-178 33-97 (306)
212 PF05911 DUF869: Plant protein 28.5 4.3E+02 0.0093 30.6 10.6 14 439-452 729-743 (769)
213 PF07795 DUF1635: Protein of u 28.5 1.1E+02 0.0024 29.5 5.1 37 327-363 24-60 (214)
214 PRK05579 bifunctional phosphop 28.3 2.4E+02 0.0051 29.8 8.1 40 135-176 82-123 (399)
215 PF07046 CRA_rpt: Cytoplasmic 28.2 2E+02 0.0044 20.2 4.9 9 386-394 13-21 (42)
216 TIGR00606 rad50 rad50. This fa 28.2 1.2E+03 0.026 28.6 15.1 41 322-362 822-862 (1311)
217 KOG1265 Phospholipase C [Lipid 28.2 6.5E+02 0.014 29.7 11.6 93 328-423 1077-1184(1189)
218 cd07657 F-BAR_Fes_Fer The F-BA 28.2 5E+02 0.011 25.3 9.9 80 327-406 103-182 (237)
219 TIGR01765 tspaseT_teng_N trans 27.9 63 0.0014 25.3 2.9 21 335-355 13-33 (73)
220 PF11215 DUF3010: Protein of u 27.7 1.5E+02 0.0032 26.7 5.5 47 128-178 54-103 (138)
221 KOG0995 Centromere-associated 27.4 8.9E+02 0.019 26.9 14.4 8 439-446 329-336 (581)
222 PF07888 CALCOCO1: Calcium bin 27.3 8.8E+02 0.019 26.8 14.7 17 330-346 284-300 (546)
223 TIGR00290 MJ0570_dom MJ0570-re 27.1 5.8E+02 0.013 24.7 14.0 137 16-163 2-161 (223)
224 cd07677 F-BAR_FCHSD2 The F-BAR 26.9 6E+02 0.013 25.3 10.1 37 324-360 119-155 (260)
225 PF15437 PGBA_C: Plasminogen-b 26.7 3.6E+02 0.0077 22.1 7.0 13 423-435 71-83 (86)
226 PF11068 YlqD: YlqD protein; 26.6 4.6E+02 0.0099 23.3 9.2 40 360-399 34-77 (131)
227 PRK13054 lipid kinase; Reviewe 26.6 3.3E+02 0.0071 27.1 8.6 66 105-178 26-93 (300)
228 TIGR03545 conserved hypothetic 26.6 6.8E+02 0.015 27.7 11.5 92 329-425 164-261 (555)
229 PRK08576 hypothetical protein; 26.5 5.4E+02 0.012 27.6 10.4 33 15-52 235-267 (438)
230 PRK13055 putative lipid kinase 26.5 2.6E+02 0.0057 28.4 7.9 72 99-178 22-94 (334)
231 PRK09174 F0F1 ATP synthase sub 26.5 5.7E+02 0.012 24.3 12.4 30 330-362 95-124 (204)
232 PRK00247 putative inner membra 26.5 8.1E+02 0.018 26.2 11.6 22 320-341 279-300 (429)
233 PRK06372 translation initiatio 26.3 2E+02 0.0043 28.5 6.7 61 107-178 131-194 (253)
234 KOG0742 AAA+-type ATPase [Post 26.3 8.6E+02 0.019 26.3 17.0 19 408-426 166-184 (630)
235 PRK02261 methylaspartate mutas 26.0 3.1E+02 0.0066 24.3 7.3 41 105-147 26-66 (137)
236 PF00834 Ribul_P_3_epim: Ribul 25.9 33 0.00071 32.6 1.1 43 99-143 153-195 (201)
237 PRK06806 fructose-bisphosphate 25.9 4.6E+02 0.0099 26.3 9.3 75 99-175 117-206 (281)
238 KOG2129 Uncharacterized conser 25.9 5.1E+02 0.011 27.6 9.6 16 325-340 256-271 (552)
239 PRK08335 translation initiatio 25.8 2.2E+02 0.0048 28.5 7.0 61 107-178 157-220 (275)
240 PF05701 WEMBL: Weak chloropla 25.7 9E+02 0.02 26.4 14.8 32 325-356 133-164 (522)
241 TIGR02855 spore_yabG sporulati 25.5 1.8E+02 0.0039 29.2 6.1 48 98-145 116-163 (283)
242 PRK00247 putative inner membra 25.5 8.6E+02 0.019 26.1 12.4 15 125-139 89-103 (429)
243 smart00857 Resolvase Resolvase 25.2 4.1E+02 0.0089 22.9 8.1 72 101-178 23-104 (148)
244 PTZ00266 NIMA-related protein 25.1 7E+02 0.015 29.9 11.8 7 439-445 528-534 (1021)
245 PF13167 GTP-bdg_N: GTP-bindin 25.0 3.3E+02 0.0072 22.7 6.9 52 96-148 7-69 (95)
246 COG1390 NtpE Archaeal/vacuolar 24.8 6E+02 0.013 24.0 10.4 47 374-420 17-64 (194)
247 PRK00409 recombination and DNA 24.6 8.5E+02 0.018 28.2 12.3 21 122-142 276-296 (782)
248 cd02071 MM_CoA_mut_B12_BD meth 24.6 2.9E+02 0.0063 23.6 6.8 40 105-146 22-61 (122)
249 PF02601 Exonuc_VII_L: Exonucl 24.5 2E+02 0.0044 28.9 6.6 53 111-164 44-105 (319)
250 cd07686 F-BAR_Fer The F-BAR (F 24.5 6.7E+02 0.015 24.5 10.2 38 325-362 115-153 (234)
251 COG1817 Uncharacterized protei 24.2 1.9E+02 0.0041 29.7 6.1 80 98-181 15-95 (346)
252 PF06936 Selenoprotein_S: Sele 24.1 2.9E+02 0.0062 26.2 7.0 23 351-373 76-98 (190)
253 PF05582 Peptidase_U57: YabG p 24.0 1.9E+02 0.004 29.2 5.9 48 98-145 117-164 (287)
254 PRK00409 recombination and DNA 23.9 1.2E+03 0.025 27.1 14.2 19 325-343 519-537 (782)
255 PRK05772 translation initiatio 23.8 1.7E+02 0.0037 30.5 6.0 63 106-177 223-288 (363)
256 PRK08535 translation initiatio 23.7 2.1E+02 0.0046 29.0 6.6 60 107-178 168-231 (310)
257 cd07681 F-BAR_PACSIN3 The F-BA 23.7 5.4E+02 0.012 25.5 9.2 78 325-405 115-202 (258)
258 cd07682 F-BAR_srGAP2 The F-BAR 23.7 7.4E+02 0.016 24.7 10.9 33 330-362 127-159 (263)
259 KOG4325 Uncharacterized conser 23.5 2.8E+02 0.006 25.6 6.4 53 322-383 155-207 (212)
260 PF04849 HAP1_N: HAP1 N-termin 23.4 8.1E+02 0.017 25.0 13.6 99 324-425 169-283 (306)
261 KOG0933 Structural maintenance 23.3 1.3E+03 0.029 27.6 13.0 76 325-403 744-819 (1174)
262 PRK08384 thiamine biosynthesis 23.2 8.8E+02 0.019 25.4 11.4 40 9-53 175-214 (381)
263 PRK09039 hypothetical protein; 23.1 8.4E+02 0.018 25.1 11.7 40 326-365 113-152 (343)
264 TIGR00512 salvage_mtnA S-methy 23.1 1.8E+02 0.0039 30.0 5.9 62 107-177 203-267 (331)
265 cd07653 F-BAR_CIP4-like The F- 23.1 6.7E+02 0.015 24.0 10.0 17 345-361 121-137 (251)
266 PRK06247 pyruvate kinase; Prov 23.0 1.5E+02 0.0032 32.2 5.4 49 122-181 356-404 (476)
267 PF14182 YgaB: YgaB-like prote 23.0 1.7E+02 0.0038 23.7 4.5 31 325-355 43-73 (79)
268 PF13362 Toprim_3: Toprim doma 22.9 1.5E+02 0.0033 24.0 4.5 32 12-43 39-72 (96)
269 PLN03188 kinesin-12 family pro 22.7 5.7E+02 0.012 31.2 10.3 31 393-425 1219-1250(1320)
270 TIGR00524 eIF-2B_rel eIF-2B al 22.7 1.6E+02 0.0034 29.9 5.3 62 107-178 175-240 (303)
271 PRK15411 rcsA colanic acid cap 22.6 4.7E+02 0.01 24.5 8.4 48 121-177 34-85 (207)
272 TIGR00640 acid_CoA_mut_C methy 22.4 2.1E+02 0.0045 25.2 5.5 64 105-173 25-88 (132)
273 cd07651 F-BAR_PombeCdc15_like 22.4 6.9E+02 0.015 23.9 11.0 69 335-409 120-188 (236)
274 KOG0978 E3 ubiquitin ligase in 22.3 7.8E+02 0.017 28.1 10.9 74 336-409 545-618 (698)
275 PF11839 DUF3359: Protein of u 22.3 4.8E+02 0.01 22.0 8.3 36 374-409 45-80 (96)
276 PTZ00419 valyl-tRNA synthetase 22.1 1.9E+02 0.004 34.4 6.5 19 324-342 924-942 (995)
277 KOG4364 Chromatin assembly fac 22.1 1.2E+03 0.026 26.5 12.4 23 373-395 296-318 (811)
278 KOG0976 Rho/Rac1-interacting s 21.9 1.3E+03 0.028 27.0 12.6 17 321-337 315-331 (1265)
279 KOG0979 Structural maintenance 21.9 7.8E+02 0.017 29.3 11.0 74 339-412 286-360 (1072)
280 PRK08334 translation initiatio 21.9 1.9E+02 0.0041 30.1 5.8 61 107-176 216-279 (356)
281 cd07685 F-BAR_Fes The F-BAR (F 21.8 7.7E+02 0.017 24.2 10.3 75 325-404 119-194 (237)
282 PLN03188 kinesin-12 family pro 21.8 9.9E+02 0.021 29.3 12.0 86 337-432 1083-1176(1320)
283 PF13155 Toprim_2: Toprim-like 21.7 1.8E+02 0.0039 23.3 4.7 29 14-42 47-75 (96)
284 TIGR02680 conserved hypothetic 21.7 1.6E+03 0.034 27.8 15.4 12 324-335 232-243 (1353)
285 PRK06371 translation initiatio 21.6 2.3E+02 0.0049 29.2 6.3 63 106-177 192-257 (329)
286 PF07926 TPR_MLP1_2: TPR/MLP1/ 21.5 5.5E+02 0.012 22.4 8.8 26 325-350 20-45 (132)
287 PF05957 DUF883: Bacterial pro 21.4 4.5E+02 0.0098 21.4 9.7 18 325-342 1-18 (94)
288 KOG4661 Hsp27-ERE-TATA-binding 21.4 8E+02 0.017 27.3 10.3 10 46-55 199-208 (940)
289 PF13662 Toprim_4: Toprim doma 21.4 1.3E+02 0.0028 23.7 3.6 29 14-42 46-74 (81)
290 PF10097 DUF2335: Predicted me 21.2 2.3E+02 0.0049 20.8 4.5 30 400-429 16-45 (50)
291 PF07046 CRA_rpt: Cytoplasmic 21.1 2.2E+02 0.0048 20.0 4.1 14 390-403 3-16 (42)
292 PF04822 Takusan: Takusan; In 21.1 1.1E+02 0.0023 25.2 3.0 22 320-342 11-32 (84)
293 TIGR03679 arCOG00187 arCOG0018 21.1 5.5E+02 0.012 24.4 8.6 31 19-54 2-33 (218)
294 PRK05720 mtnA methylthioribose 21.0 2.2E+02 0.0047 29.5 6.1 64 106-178 202-268 (344)
295 KOG3054 Uncharacterized conser 21.0 5.9E+02 0.013 25.2 8.5 16 417-432 164-179 (299)
296 cd02070 corrinoid_protein_B12- 20.8 3.3E+02 0.0072 25.5 6.9 43 105-149 105-147 (201)
297 COG1597 LCB5 Sphingosine kinas 20.5 2.4E+02 0.0052 28.4 6.2 74 96-178 19-92 (301)
298 PRK14472 F0F1 ATP synthase sub 20.3 6.6E+02 0.014 22.9 12.4 14 349-362 76-89 (175)
299 smart00493 TOPRIM topoisomeras 20.2 1.3E+02 0.0029 22.9 3.4 26 15-40 48-73 (76)
300 TIGR03798 ocin_TIGR03798 bacte 20.1 3E+02 0.0065 20.9 5.3 38 419-456 20-58 (64)
301 COG1184 GCD2 Translation initi 20.1 2.9E+02 0.0063 28.1 6.5 61 107-178 167-230 (301)
302 COG1196 Smc Chromosome segrega 20.1 1.6E+03 0.034 27.2 15.1 45 322-366 260-304 (1163)
No 1
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.95 E-value=1.5e-27 Score=213.01 Aligned_cols=146 Identities=49% Similarity=0.768 Sum_probs=122.5
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
+||||+|+|+.|.+||+||++++...+.. +++|||.++....+.+ .+. .+....+.+...+.+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~-l~ll~v~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~ 63 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQT-IVLVHVHPPITSIPSS--------SGK--------LEVASAYKQEEDKEA 63 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCc-EEEEEeccCcccCCCC--------ccc--------hHHHHHHHHHHHHHH
Confidence 59999999999999999999999877775 9999999764321110 010 012234455566778
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
+++|..+...|...|+.++..++.+|+|++.|+++|++.++|+||||+||++++.++|+|++|+.+|++++|++||||||
T Consensus 64 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 64 KELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEE
Confidence 88999999889888999999998867999999999999999999999999999999999866999999999999999999
Q ss_pred cCC
Q 012682 176 EKG 178 (458)
Q Consensus 176 ~kg 178 (458)
++|
T Consensus 144 ~~~ 146 (146)
T cd01989 144 SKG 146 (146)
T ss_pred eCc
Confidence 987
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.91 E-value=3e-23 Score=184.97 Aligned_cols=139 Identities=15% Similarity=0.113 Sum_probs=109.5
Q ss_pred CCeEEEeecCC--HHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 14 ALSVAVAVKGN--RKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 14 ~~~ILVAVDgS--~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
|++|||||||| +.|.+|++||+.++.. ++ +|+||||+++..... ..... ...+.+.+..
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~-~~-~l~llhv~~~~~~~~----------~~~~~-------~~~~~~~~~~ 62 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQD-DG-VIHLLHVLPGSASLS----------LHRFA-------ADVRRFEEHL 62 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhc-CC-eEEEEEEecCccccc----------ccccc-------cchhhHHHHH
Confidence 78999999999 4899999999998765 45 599999998642110 00000 0112344555
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCce
Q 012682 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~ 171 (458)
++.+++.|..+.+.+...+++++..+.. |+|++.|+++|++.++||||||+||++ +.++|+|| |+.+|+++++ ||
T Consensus 63 ~~~~~~~l~~~~~~~~~~~~~v~~~v~~-G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS-~a~~v~~~a~--~p 137 (142)
T PRK15456 63 QHEAEERLQTMVSHFTIDPSRIKQHVRF-GSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGS-NASSVIRHAN--LP 137 (142)
T ss_pred HHHHHHHHHHHHHHhCCCCcceEEEEcC-CChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCc-cHHHHHHcCC--CC
Confidence 6667777777777666567888877766 999999999999999999999999986 78899996 9999999999 99
Q ss_pred EEEEc
Q 012682 172 VYGVE 176 (458)
Q Consensus 172 VlVV~ 176 (458)
|+||+
T Consensus 138 VLvV~ 142 (142)
T PRK15456 138 VLVVR 142 (142)
T ss_pred EEEeC
Confidence 99995
No 3
>PRK15005 universal stress protein F; Provisional
Probab=99.89 E-value=1.4e-22 Score=180.15 Aligned_cols=141 Identities=12% Similarity=0.106 Sum_probs=106.3
Q ss_pred CCeEEEeecCCHH--hHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 14 ALSVAVAVKGNRK--SRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 14 ~~~ILVAVDgS~~--S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
|++||||||||+. +.+|++||++++...++. |+||||+++..... . .+ ..+.. .. ......
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~-l~ll~v~~~~~~~~-~--------~~-~~~~~----~~--~~~~~~ 64 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAE-VHFLTVIPSLPYYA-S--------LG-LAYSA----EL--PAMDDL 64 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCe-EEEEEEEccCcccc-c--------cc-ccccc----cc--hHHHHH
Confidence 6899999999997 589999999999877774 99999998642211 0 00 00000 00 001223
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCce
Q 012682 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~ 171 (458)
++.+++.|..+.+.+...+++++..+.. |+|++.|++++++.++||||||+|+ +++.++|+|| |+.+|++++| ||
T Consensus 65 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~-G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS-~a~~vl~~a~--cp 139 (144)
T PRK15005 65 KAEAKSQLEEIIKKFKLPTDRVHVHVEE-GSPKDRILELAKKIPADMIIIASHR-PDITTYLLGS-NAAAVVRHAE--CS 139 (144)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeC-CCHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecc-hHHHHHHhCC--CC
Confidence 3444556666666566667788888765 9999999999999999999999994 6789999997 9999999999 99
Q ss_pred EEEEc
Q 012682 172 VYGVE 176 (458)
Q Consensus 172 VlVV~ 176 (458)
|+||+
T Consensus 140 VlvVr 144 (144)
T PRK15005 140 VLVVR 144 (144)
T ss_pred EEEeC
Confidence 99995
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.87 E-value=1.6e-21 Score=174.43 Aligned_cols=138 Identities=16% Similarity=0.182 Sum_probs=104.3
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHH
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKW 93 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~ 93 (458)
|++||||||||+.|.+|+++|+.++...++ +|+||||+++..... + +.+.+ ..+...+...+
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a-~l~llhV~~~~~~~~-~---------~~~~~-------~~~~~~~~~~~ 64 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDA-HLTLIHIDDGLSELY-P---------GIYFP-------ATEDILQLLKN 64 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCC-eEEEEEEccCcchhc-h---------hhhcc-------chHHHHHHHHH
Confidence 789999999999999999999999987788 499999987642110 0 01111 01123344455
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEE
Q 012682 94 KTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVY 173 (458)
Q Consensus 94 ~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~Vl 173 (458)
.+++.|.++...+.. ..++..+.. |+|++.|+++|++.++||||||+| ++++.++| | |+.+|+++++ |||+
T Consensus 65 ~~~~~l~~~~~~~~~--~~~~~~v~~-G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~--va~~V~~~s~--~pVL 135 (142)
T PRK09982 65 KSDNKLYKLTKNIQW--PKTKLRIER-GEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P--AYRGMINKMS--ADLL 135 (142)
T ss_pred HHHHHHHHHHHhcCC--CcceEEEEe-cCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H--HHHHHHhcCC--CCEE
Confidence 566677776655532 335555544 999999999999999999999986 88888877 4 9999999999 9999
Q ss_pred EEcCC
Q 012682 174 GVEKG 178 (458)
Q Consensus 174 VV~kg 178 (458)
||+..
T Consensus 136 vv~~~ 140 (142)
T PRK09982 136 IVPFI 140 (142)
T ss_pred EecCC
Confidence 99853
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.86 E-value=4e-21 Score=171.37 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=98.1
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
.|++||||+|||+.|+.||+||+.++...++ +|+||||.++.... .....+ .....+.+...
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~-----------~~~~~~------~~~~~~~~~~~ 63 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYNA-KVSLIHVDVNYSDL-----------YTGLID------VNLGDMQKRIS 63 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhCC-EEEEEEEccChhhh-----------hhhhhh------cchHHHHHHHH
Confidence 4799999999999999999999999877777 59999995332110 001000 00112222333
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceE
Q 012682 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (458)
Q Consensus 93 ~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~V 172 (458)
+...+.+.. ++...|+.+...++..|+|++.|+++|++.++||||||+|| +++. . +|| |+.+|+++++ |||
T Consensus 64 ~~~~~~l~~---~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~-~-lgS-va~~v~~~a~--~pV 134 (144)
T PRK15118 64 EETHHALTE---LSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWS-K-LMS-SARQLINTVH--VDM 134 (144)
T ss_pred HHHHHHHHH---HHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHH-H-HHH-HHHHHHhhCC--CCE
Confidence 333344433 33456777655555559999999999999999999999997 4444 4 585 9999999999 999
Q ss_pred EEEcC
Q 012682 173 YGVEK 177 (458)
Q Consensus 173 lVV~k 177 (458)
+||+.
T Consensus 135 Lvv~~ 139 (144)
T PRK15118 135 LIVPL 139 (144)
T ss_pred EEecC
Confidence 99985
No 6
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.85 E-value=1.8e-20 Score=161.90 Aligned_cols=139 Identities=24% Similarity=0.236 Sum_probs=100.5
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHH
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKW 93 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~ 93 (458)
+++||||+|+++.+..|++||+.++...++ +|++|||++...... ... .......... .
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~-~i~~l~v~~~~~~~~-----------~~~--------~~~~~~~~~~-~ 60 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGA-EITLLHVIPPPPQYS-----------FSA--------AEDEESEEEA-E 60 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTC-EEEEEEEEESCHCHH-----------HHH--------HHHHHHHHHH-H
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCC-eEEEEEeeccccccc-----------ccc--------cccccccccc-c
Confidence 689999999999999999999999988778 499999998752110 000 0000000000 0
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEE
Q 012682 94 KTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVY 173 (458)
Q Consensus 94 ~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~Vl 173 (458)
............+...+.......+..|++.++|++++++.++|+||||+++++++.++++|+ ++.+|++++| |||+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs-~~~~l~~~~~--~pVl 137 (140)
T PF00582_consen 61 EEEQARQAEAEEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGS-VAEKLLRHAP--CPVL 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHH-HHHHHHHHTS--SEEE
T ss_pred hhhhhhhHHHHHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCC-HHHHHHHcCC--CCEE
Confidence 001011111123333445555555566999999999999999999999999999999999996 9999999999 9999
Q ss_pred EEc
Q 012682 174 GVE 176 (458)
Q Consensus 174 VV~ 176 (458)
||+
T Consensus 138 vv~ 140 (140)
T PF00582_consen 138 VVP 140 (140)
T ss_dssp EEE
T ss_pred EeC
Confidence 996
No 7
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.84 E-value=6.5e-20 Score=159.65 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=109.8
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
+||||+|+++++..+|++|..++...+. +|+++||+++..... .. . ........
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~-~v~ll~v~~~~~~~~----------~~-----------~----~~~~~~~~ 54 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNG-EIIPLNVIEVPNHSS----------PS-----------Q----LEVNVQRA 54 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCC-eEEEEEEEecCCCCC----------cc-----------h----hHHHHHHH
Confidence 5999999999999999999999987667 599999998642110 00 0 01122445
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
++.+..+...+...|++++..+..+|+|.++|++++++.++|+||||+++++++.++++|| ++.+|+++++ |||+||
T Consensus 55 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs-~~~~v~~~~~--~pvlvv 131 (132)
T cd01988 55 RKLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGG-VIDQVLESAP--CDVAVV 131 (132)
T ss_pred HHHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCc-hHHHHHhcCC--CCEEEe
Confidence 6778888888888899998888767999999999999999999999999999998899996 9999999999 999998
Q ss_pred c
Q 012682 176 E 176 (458)
Q Consensus 176 ~ 176 (458)
+
T Consensus 132 ~ 132 (132)
T cd01988 132 K 132 (132)
T ss_pred C
Confidence 5
No 8
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.83 E-value=9.9e-20 Score=157.94 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=100.0
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
+||||||+++.+..||+||+.++...+.. |++|||.++.. ... ....
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~-l~ll~v~~~~~---------------~~~-----------------~~~~ 47 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAP-WYVVYVETPRL---------------NRL-----------------SEAE 47 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCC-EEEEEEecCcc---------------ccC-----------------CHHH
Confidence 59999999999999999999999877775 99999987531 100 0112
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhC-CCCceEEE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICV-PSFCTVYG 174 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~A-p~~C~VlV 174 (458)
++.+..+...+...++++ .++.+|+|+++|+++++++++|+||||+|+++++.++|+|| ++.+|++++ + |||+|
T Consensus 48 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs-~~~~v~~~a~~--~~v~v 122 (124)
T cd01987 48 RRRLAEALRLAEELGAEV--VTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGS-LVDRLLRRAGN--IDVHI 122 (124)
T ss_pred HHHHHHHHHHHHHcCCEE--EEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhccc-HHHHHHHhCCC--CeEEE
Confidence 345556666666666654 34456899999999999999999999999999999999996 999999999 5 99999
Q ss_pred Ec
Q 012682 175 VE 176 (458)
Q Consensus 175 V~ 176 (458)
|.
T Consensus 123 ~~ 124 (124)
T cd01987 123 VA 124 (124)
T ss_pred eC
Confidence 84
No 9
>PRK10116 universal stress protein UspC; Provisional
Probab=99.82 E-value=1.4e-19 Score=160.62 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=105.3
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
.|++|||++|+|+.+..||++|+.++...++ ++++|||+++.... . .. . ....+.+.+...
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a-~l~ll~v~~~~~~~-----------~-~~-~-----~~~~~~~~~~~~ 62 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNG-KISLITLASDPEMY-----------N-QF-A-----APMLEDLRSVMQ 62 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCC-EEEEEEEccCcccc-----------h-hh-h-----HHHHHHHHHHHH
Confidence 4899999999999999999999999987777 59999998654210 0 00 0 112233444444
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceE
Q 012682 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (458)
Q Consensus 93 ~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~V 172 (458)
++.++.|..+ +...|++....++..|++.+.|++++++.++||||||+||++++.+++ + |+.+|+++++ |||
T Consensus 63 ~~~~~~l~~~---~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s-~a~~v~~~~~--~pV 134 (142)
T PRK10116 63 EETQSFLDKL---IQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--C-SAKRVIASSE--VDV 134 (142)
T ss_pred HHHHHHHHHH---HHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--H-HHHHHHhcCC--CCE
Confidence 4555555443 345677765555566999999999999999999999999999988764 4 9999999999 999
Q ss_pred EEEcC
Q 012682 173 YGVEK 177 (458)
Q Consensus 173 lVV~k 177 (458)
+||+-
T Consensus 135 Lvv~~ 139 (142)
T PRK10116 135 LLVPL 139 (142)
T ss_pred EEEeC
Confidence 99974
No 10
>PRK11175 universal stress protein UspE; Provisional
Probab=99.80 E-value=5.5e-19 Score=176.52 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=113.7
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
.|++||||+|+|+.+..|++||+.++...++. |++|||+++... +.+ +.. ..+......+...
T Consensus 2 ~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~-l~ll~v~~~~~~-~~~---------~~~------~~~~~~~~~~~~~ 64 (305)
T PRK11175 2 KYQNILVVIDPNQDDQPALRRAVYLAQRNGGK-ITAFLPIYDFSY-EMT---------TLL------SPDEREAMRQGVI 64 (305)
T ss_pred CcceEEEEcCCCccccHHHHHHHHHHHhcCCC-EEEEEeccCchh-hhh---------ccc------chhHHHHHHHHHH
Confidence 37899999999999999999999999877775 999999865321 101 010 0111122222233
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceE
Q 012682 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (458)
Q Consensus 93 ~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~V 172 (458)
+..++.|..+...+...|++++..+...|+|.++|+++|.+.++||||||++|++++.+.++|| ++.+|++++| |||
T Consensus 65 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs-~~~~l~~~~~--~pv 141 (305)
T PRK11175 65 SQRTAWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTP-TDWHLLRKCP--CPV 141 (305)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccCh-hHHHHHhcCC--CCE
Confidence 3445566666666667789998877766999999999999999999999999999999999996 9999999999 999
Q ss_pred EEEcCC
Q 012682 173 YGVEKG 178 (458)
Q Consensus 173 lVV~kg 178 (458)
+||+.+
T Consensus 142 lvv~~~ 147 (305)
T PRK11175 142 LMVKDQ 147 (305)
T ss_pred EEeccc
Confidence 999864
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.75 E-value=1.2e-17 Score=166.91 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=103.1
Q ss_pred CCCCeEEEeecCCHHh-------HHHHHHHHHHhccC-CCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHH
Q 012682 12 SPALSVAVAVKGNRKS-------RYAVLWALEKFIPE-GINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDV 83 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S-------~~AL~wAl~~a~~~-g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~ 83 (458)
+++++||||+|+|+.+ ..||++|+.++... ++. |+||||++...... ... ++. ..
T Consensus 150 ~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~-l~ll~v~~~~~~~~----------~~~-~~~-----~~ 212 (305)
T PRK11175 150 PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAE-VHLVNAYPVTPINI----------AIE-LPE-----FD 212 (305)
T ss_pred CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCc-eEEEEEecCcchhc----------ccc-ccc-----cc
Confidence 3579999999998753 68999999998776 774 99999987542100 000 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHh
Q 012682 84 AAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRIS 163 (458)
Q Consensus 84 ~~~~~~~~~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vl 163 (458)
...+.+..+....+.+..+. ...|+.+....+..|+|.+.|++++++.++||||||++|++++.++|+|| ++.+|+
T Consensus 213 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS-~a~~v~ 288 (305)
T PRK11175 213 PSVYNDAIRGQHLLAMKALR---QKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGN-TAEHVI 288 (305)
T ss_pred hhhHHHHHHHHHHHHHHHHH---HHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecc-hHHHHH
Confidence 11223333333333444433 33466654344445999999999999999999999999999999999996 999999
Q ss_pred hhCCCCceEEEEcCC
Q 012682 164 ICVPSFCTVYGVEKG 178 (458)
Q Consensus 164 k~Ap~~C~VlVV~kg 178 (458)
+++| |||+||+..
T Consensus 289 ~~~~--~pVLvv~~~ 301 (305)
T PRK11175 289 DHLN--CDLLAIKPD 301 (305)
T ss_pred hcCC--CCEEEEcCC
Confidence 9999 999999653
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.71 E-value=2.5e-16 Score=134.68 Aligned_cols=130 Identities=26% Similarity=0.323 Sum_probs=108.0
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
+||||+|+++.+..+++||..++...+. .|++|||.++....+ . ...+......
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~-~i~~l~v~~~~~~~~------------~-------------~~~~~~~~~~ 54 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGA-ELVLLHVVDPPPSSA------------A-------------ELAELLEEEA 54 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCC-EEEEEEEecCCCCcc------------h-------------hHHHHHHHHH
Confidence 5999999999999999999999988777 499999987642100 0 1122233455
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
++.|..+...|...|+++...+.. |++.++|++++++.++|+||||+++++.+.+.+.|+ ++.++++.++ |||++|
T Consensus 55 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~-~~~~ll~~~~--~pvliv 130 (130)
T cd00293 55 RALLEALREALAEAGVKVETVVLE-GDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGS-VAERVLRHAP--CPVLVV 130 (130)
T ss_pred HHHHHHHHHHHhcCCCceEEEEec-CCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeecc-HHHHHHhCCC--CCEEeC
Confidence 678888888887789998888765 888999999999999999999999999998899996 9999999988 999986
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.70 E-value=6e-16 Score=137.15 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=113.2
Q ss_pred CCCeEEEeec-CCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 13 PALSVAVAVK-GNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 13 ~~~~ILVAVD-gS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
.+++|++++| +++.+..|+.+|...+...+.. +.++||.+........ . ..... ..........
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~-~~~~~v~~~~~~~~~~--------~-~~~~~-----~~~~~~~~~~ 68 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAP-LILLVVIDPLEPTALV--------S-VALAD-----APIPLSEEEL 68 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCe-EEEEEEeccccccccc--------c-ccccc-----chhhhhHHHH
Confidence 4789999999 9999999999999998877775 8899998765321111 0 00000 0011122333
Q ss_pred HHHHHHHHHHHHHHhhcCCCeE-EEEEEecCCH-HHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCC
Q 012682 92 KWKTDRLLLPFRNMCAQRRVEV-EVKVIESDDV-AKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSF 169 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~v-e~vvle~Gdp-a~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~ 169 (458)
.....+.+..+.+.....|+.. +..+.. |+| .+.|++++.+.++|+||||++|++++.+.++|| |+.+|+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGs-vs~~v~~~~~-- 144 (154)
T COG0589 69 EEEAEELLAEAKALAEAAGVPVVETEVVE-GSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGS-VAEKVLRHAP-- 144 (154)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEEEec-CCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeeh-hHHHHHhcCC--
Confidence 4556777777778788888884 666665 888 799999999999999999999999999999996 9999999999
Q ss_pred ceEEEEcCC
Q 012682 170 CTVYGVEKG 178 (458)
Q Consensus 170 C~VlVV~kg 178 (458)
|||+||+..
T Consensus 145 ~pVlvv~~~ 153 (154)
T COG0589 145 CPVLVVRSE 153 (154)
T ss_pred CCEEEEccC
Confidence 999999753
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.40 E-value=3.4e-12 Score=130.76 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=79.2
Q ss_pred CCCCCeEEEeecCCHHhHHHHHHHHHHhccC--CCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHH
Q 012682 11 NSPALSVAVAVKGNRKSRYAVLWALEKFIPE--GINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYK 88 (458)
Q Consensus 11 ~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~--g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~ 88 (458)
...|++||||||||+.|++|+++|++++... ++ +|++|||.+...... .. +
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~A-eL~lL~Vv~~~~~~~------------~~--------~------ 54 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETP-TVHLVAAASGRAVDP------------EG--------Q------ 54 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCC-EEEEEEEecCccccc------------ch--------h------
Confidence 3578999999999999999999999999764 35 699999988532100 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhhc------CCCeEEEEEEec-------CCHHHHHHHHHHhCCCCEEEEccCC
Q 012682 89 QEEKWKTDRLLLPFRNMCAQ------RRVEVEVKVIES-------DDVAKAIADEVASCNINKLVIGAQS 145 (458)
Q Consensus 89 ~~~~~~a~~lL~~~~~~~~~------~gV~ve~vvle~-------Gdpa~aIve~A~e~~aDlIVmGS~g 145 (458)
......++++..+.+.+.. .|+++++.++.+ |+|++.|++||+++++|+||||-.-
T Consensus 55 -~~~~~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~ 123 (357)
T PRK12652 55 -DELAAAEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY 123 (357)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC
Confidence 1112233444444444433 589999888763 8999999999999999999999874
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.12 E-value=9.6e-10 Score=125.74 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=99.7
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
....+||||||+++.+.+++++|..++...++. +++|||..+.. ... + .
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~-~~~l~V~~~~~--------------~~~-~------~--------- 296 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARLGSV-WHAVYVETPRL--------------HRL-P------E--------- 296 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhcCCC-EEEEEEecCCc--------------CcC-C------H---------
Confidence 356789999999999999999999999988886 99999986531 000 0 0
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCce
Q 012682 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~ 171 (458)
.. +..+....+++++.|.+ .+.+.++|++++|++||++++++.||||.++++++ ++.|| ++.++++.+|+ .+
T Consensus 297 -~~-~~~l~~~~~lA~~lGa~--~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s-~~~~l~r~~~~-id 368 (895)
T PRK10490 297 -KK-RRAILSALRLAQELGAE--TATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRES-FADRLARLGPD-LD 368 (895)
T ss_pred -HH-HHHHHHHHHHHHHcCCE--EEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCC-HHHHHHHhCCC-CC
Confidence 01 12222333577777876 44556789999999999999999999999999876 44675 99999999985 89
Q ss_pred EEEEcCC
Q 012682 172 VYGVEKG 178 (458)
Q Consensus 172 VlVV~kg 178 (458)
|+||+..
T Consensus 369 i~iv~~~ 375 (895)
T PRK10490 369 LVIVALD 375 (895)
T ss_pred EEEEeCC
Confidence 9999754
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.01 E-value=4.4e-09 Score=115.04 Aligned_cols=139 Identities=22% Similarity=0.172 Sum_probs=110.7
Q ss_pred CCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHH
Q 012682 10 PNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQ 89 (458)
Q Consensus 10 ~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~ 89 (458)
......+|||||++++.+...+++|..++...++. +++|||..+... +. +
T Consensus 244 ~~~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~-~~av~v~~~~~~-------------~~--~-------------- 293 (890)
T COG2205 244 VWAARERILVCISGSPGSEKLIRRAARLASRLHAK-WTAVYVETPELH-------------RL--S-------------- 293 (890)
T ss_pred cccccceEEEEECCCCchHHHHHHHHHHHHHhCCC-eEEEEEeccccc-------------cc--c--------------
Confidence 34556899999999999999999999999888885 999999866421 00 0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCC
Q 012682 90 EEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSF 169 (458)
Q Consensus 90 ~~~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~ 169 (458)
+.....|.....++++.|- +.+++.++|++++|++||+.+++..||||.+.++.+.++|.|+ +..++++++|+
T Consensus 294 ---~~~~~~l~~~~~Lae~lGa--e~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~-l~~~L~~~~~~- 366 (890)
T COG2205 294 ---EKEARRLHENLRLAEELGA--EIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGS-LADRLAREAPG- 366 (890)
T ss_pred ---HHHHHHHHHHHHHHHHhCC--eEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhccc-HHHHHHhcCCC-
Confidence 0113344555566766664 5566678999999999999999999999999999999999996 99999999985
Q ss_pred ceEEEEcCCccccccc
Q 012682 170 CTVYGVEKGKLSSVRP 185 (458)
Q Consensus 170 C~VlVV~kgk~~s~r~ 185 (458)
.+|+||+.+...-.|+
T Consensus 367 idv~ii~~~~~~~~~~ 382 (890)
T COG2205 367 IDVHIVALDAPPDKRP 382 (890)
T ss_pred ceEEEeeCCCCccccc
Confidence 8999999876654443
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.02 E-value=2.3e-05 Score=63.60 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=67.0
Q ss_pred EEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHHH
Q 012682 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTD 96 (458)
Q Consensus 17 ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a~ 96 (458)
|+|+++|+..|..++.||.... ..+. +++++|+ +
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~-~~~~~~~------------------------------~-------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGP-EVVALVV------------------------------V-------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCC-CEEEEEe------------------------------H--------------
Confidence 6899999999999999998866 3334 3666665 1
Q ss_pred HHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEE
Q 012682 97 RLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYG 174 (458)
Q Consensus 97 ~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlV 174 (458)
.....+.+++++.++|+||+|+++.......+.|.++...+++.++ |||+.
T Consensus 35 -------------------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~--~~vl~ 85 (86)
T cd01984 35 -------------------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAG--IPVLT 85 (86)
T ss_pred -------------------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccC--CceeC
Confidence 3445566777788999999999999888888777238899999988 99874
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.59 E-value=0.018 Score=66.05 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=89.2
Q ss_pred CCCCCCCeEEEeecCCHHhHHHHHHHHHHhcc-CCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHH
Q 012682 9 LPNSPALSVAVAVKGNRKSRYAVLWALEKFIP-EGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAY 87 (458)
Q Consensus 9 ~~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~-~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~ 87 (458)
..++..-+||+|+-..++-...+..+-..... .....++++|+++...- ..| ..++ .+........+
T Consensus 453 ~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r-~~~----------~l~~-h~~~~~~~~~~ 520 (832)
T PLN03159 453 SKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGR-ASA----------MLIV-HNTRKSGRPAL 520 (832)
T ss_pred CCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCC-Ccc----------ceee-eeccccccccc
Confidence 44556779999999888877777654321111 11124999999885321 001 0000 00000000000
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCCeEEEEEE--ecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccc------ccccch
Q 012682 88 KQEEKWKTDRLLLPFRNMCAQ-RRVEVEVKVI--ESDDVAKAIADEVASCNINKLVIGAQSQGIFTWK------FKKNNL 158 (458)
Q Consensus 88 ~~~~~~~a~~lL~~~~~~~~~-~gV~ve~vvl--e~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~------~lGSsV 158 (458)
. ......++++..|+.+... .+|.+..... ...+..+.||..|.+..+++||+|-|.+..+... .++ .+
T Consensus 521 ~-~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r-~~ 598 (832)
T PLN03159 521 N-RTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFR-GV 598 (832)
T ss_pred c-cccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHH-HH
Confidence 0 0011124555555555433 3576665443 3359999999999999999999999975433222 334 37
Q ss_pred hHHHhhhCCCCceEEE-EcCCc
Q 012682 159 SSRISICVPSFCTVYG-VEKGK 179 (458)
Q Consensus 159 s~~Vlk~Ap~~C~VlV-V~kgk 179 (458)
-.+|+++|| |+|-| |.+|.
T Consensus 599 n~~VL~~Ap--CsVgIlVDRg~ 618 (832)
T PLN03159 599 NQNVLANAP--CSVGILVDRGL 618 (832)
T ss_pred HHHHHccCC--CCEEEEEeCCC
Confidence 799999999 98855 44453
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.24 E-value=0.066 Score=49.76 Aligned_cols=95 Identities=14% Similarity=0.187 Sum_probs=65.4
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
+|+||+.|...|.-++.++.+.+...+.. +.+|||-.... . . .
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~-v~~v~vd~g~~---------------~---------~------------~ 43 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIR-LIAAHVDHGLR---------------P---------E------------S 43 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCCC---------------h---------h------------H
Confidence 58999999999999999888866544554 89999843210 0 0 0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCC--------HH--------HHHHHHHHhCCCCEEEEccCCCC
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDD--------VA--------KAIADEVASCNINKLVIGAQSQG 147 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gd--------pa--------~aIve~A~e~~aDlIVmGS~grs 147 (458)
.+....++.+|...|+++..+.+.... .. ..|.++|.+++++.|+.|.+..-
T Consensus 44 ~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 44 DEEAEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHH
Confidence 112334455677778887665543222 22 57888999999999999999643
No 20
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=94.87 E-value=0.37 Score=44.71 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=56.6
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
+|+||+-|.+.|...+....+.....+. ++.++||-.... .. .
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~-~~~~~~vdh~~~---------------~~--------s------------- 43 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGI-KLIAVHVDHGLR---------------EE--------S------------- 43 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTT-EEEEEEEE-STS---------------CC--------H-------------
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCC-CeEEEEEecCCC---------------cc--------c-------------
Confidence 6999999999998888877776655555 599999975431 10 0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEec-----CCH--------HHHHHHHHHhCCCCEEEEccCC
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIES-----DDV--------AKAIADEVASCNINKLVIGAQS 145 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~-----Gdp--------a~aIve~A~e~~aDlIVmGS~g 145 (458)
..-......+|...||+.....+.. +.. ...|.++|.+.+++.|++|-|.
T Consensus 44 ~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 44 DEEAEFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred chhHHHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 1112334566888888887776652 111 1466789999999999999985
No 21
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=94.84 E-value=0.28 Score=45.20 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=62.4
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
+|+|++.|...|.-++.++.......+. ++.+||+-.... . . .
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~-~v~~v~id~~~~---------------~---------~------------~ 43 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGL-RLVAVHVDHGLR---------------P---------E------------S 43 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCC-cEEEEEecCCCC---------------c---------h------------H
Confidence 5899999999999999998776544444 499999843210 0 0 0
Q ss_pred HHHHHHHHHHhhcCCCeEEEE--EEecCCH-----------HHHHHHHHHhCCCCEEEEccCCCC
Q 012682 96 DRLLLPFRNMCAQRRVEVEVK--VIESDDV-----------AKAIADEVASCNINKLVIGAQSQG 147 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~v--vle~Gdp-----------a~aIve~A~e~~aDlIVmGS~grs 147 (458)
.+.+..+..+|...|+++..+ ....+.- ...+.++|.+++++.|+.|.+...
T Consensus 44 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 44 DEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 122334445666678877665 1111110 156778999999999999998643
No 22
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=91.88 E-value=1.9 Score=39.39 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=28.5
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccC--CCCeEEEEEEecC
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPE--GINLFKLLHVRPR 54 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~--g~~~l~LLHV~~~ 54 (458)
+|+|++.|...|..++.++....... +- .++++||-..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~-~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGF-ELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCe-EEEEEEEECC
Confidence 58999999999999988877654322 33 4888888643
No 23
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=91.74 E-value=3.5 Score=47.55 Aligned_cols=151 Identities=20% Similarity=0.238 Sum_probs=79.6
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCC-CCCCCcccccccchHHHHHHHHHHH
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIG-HPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~-~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
..+|+|..=|.+..+.||.+|..++...+- .++++|..+......... ... ...+...+. ..++ . +..+
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p~v-~lTVirf~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~--~---~~e~ 699 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHPGI-TLTVMRFIPGEDAAPTAS--QPASSPSDPRIPT--VETD--G---KKER 699 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCCe-EEEEEEEEcccccccccc--ccccccccccccc--cccc--c---hhHH
Confidence 458999998888999999999999976665 499999876532111000 000 000000010 0000 0 0111
Q ss_pred HHHHHHHHHHHHHhh-cCCCeEEEEEEecC-CHHHHHHHHHHhCCCCEEEEccCCC--C----Cccccc----cccchhH
Q 012682 93 WKTDRLLLPFRNMCA-QRRVEVEVKVIESD-DVAKAIADEVASCNINKLVIGAQSQ--G----IFTWKF----KKNNLSS 160 (458)
Q Consensus 93 ~~a~~lL~~~~~~~~-~~gV~ve~vvle~G-dpa~aIve~A~e~~aDlIVmGS~gr--s----~~~r~~----lGSsVs~ 160 (458)
+.-++++..|+.... ...|.+.+.++.+| +...+|-... .+.||+|||.+.. + |+..|- +|. +-+
T Consensus 700 ~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~--~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~-iGD 776 (832)
T PLN03159 700 QLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMD--SAHDLFIVGRGQGMISPLTAGLTDWSECPELGA-IGD 776 (832)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHHhh--ccCcEEEEecCCCCCcchhccccccccCCccch-hhh
Confidence 122556777766543 34577777777544 2333333332 2489999998533 2 233332 353 433
Q ss_pred HHhhhCCCC---ceEEEEcCCc
Q 012682 161 RISICVPSF---CTVYGVEKGK 179 (458)
Q Consensus 161 ~Vlk~Ap~~---C~VlVV~kgk 179 (458)
-+. . ++| -.|+||....
T Consensus 777 ~La-S-~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 777 LLA-S-SDFAATVSVLVVQQYV 796 (832)
T ss_pred HHh-c-CCCCCceeEEEEEeec
Confidence 332 2 222 4689997654
No 24
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=91.68 E-value=2.7 Score=41.31 Aligned_cols=96 Identities=10% Similarity=0.107 Sum_probs=60.7
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCC-CeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHH
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGI-NLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQE 90 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~-~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~ 90 (458)
.+..+|+||+.|...|...|.++..+....+. -+|+.|||-... ..+ +
T Consensus 27 ~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~---------------~~~--------~-------- 75 (258)
T PRK10696 27 EEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQ---------------PGF--------P-------- 75 (258)
T ss_pred CCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCC---------------CCC--------C--------
Confidence 35679999999999999888877664332221 137777774321 011 0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEEec----------CC---------HHHHHHHHHHhCCCCEEEEccCCC
Q 012682 91 EKWKTDRLLLPFRNMCAQRRVEVEVKVIES----------DD---------VAKAIADEVASCNINKLVIGAQSQ 146 (458)
Q Consensus 91 ~~~~a~~lL~~~~~~~~~~gV~ve~vvle~----------Gd---------pa~aIve~A~e~~aDlIVmGS~gr 146 (458)
.+. ++.+|...||++..+-++. |. -...+.++|.+.++|.|++|.|.-
T Consensus 76 -----~~~---~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d 142 (258)
T PRK10696 76 -----EHV---LPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRD 142 (258)
T ss_pred -----HHH---HHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH
Confidence 011 2457888888876543321 11 114566889999999999999964
No 25
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=89.42 E-value=3.6 Score=40.12 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECA 404 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a 404 (458)
..+..++.++-.+|..+...|..+|+|+-.|++|.......-.--...++.++..-..+..-+++-+..+..++.++...
T Consensus 115 ~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~ 194 (251)
T cd07653 115 SKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKE 194 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777889999999999999999999987664332100113345555555566666667777788888887666
Q ss_pred HH
Q 012682 405 RA 406 (458)
Q Consensus 405 ~~ 406 (458)
|+
T Consensus 195 ~~ 196 (251)
T cd07653 195 QR 196 (251)
T ss_pred HH
Confidence 54
No 26
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=89.01 E-value=16 Score=38.35 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=5.7
Q ss_pred HHHhHHHHhHHHH
Q 012682 348 AQNEANDASRKVN 360 (458)
Q Consensus 348 Ac~Ea~~Ak~k~~ 360 (458)
..+++-.+.+++.
T Consensus 116 ~~k~ae~~~k~a~ 128 (387)
T PRK09510 116 QKKQAEEAAKQAA 128 (387)
T ss_pred HHHHHHHHHHHHH
Confidence 4455544433333
No 27
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.76 E-value=7.6 Score=43.89 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=14.0
Q ss_pred cchhhHHHHHHHHHHHHH
Q 012682 322 ESQVDVNFELEKLRIELR 339 (458)
Q Consensus 322 ~~~~~~eaEm~rLrlELk 339 (458)
+....+|+|++|||-||+
T Consensus 418 ~a~~rLE~dvkkLraeLq 435 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQ 435 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345789999999996654
No 28
>PLN03086 PRLI-interacting factor K; Provisional
Probab=88.40 E-value=2 Score=47.02 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012682 389 QEKKKYETARREAECARASAEKEAAQRQEAEM 420 (458)
Q Consensus 389 ~EK~k~~aA~eaaE~a~~~ae~Ea~kR~~aE~ 420 (458)
.|-+|.+.|+|++..++|+-..|||.+.++.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (567)
T PLN03086 35 EEAAKQREAIEAAQRSRRLDAIEAQIKADQQM 66 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999998888888755544
No 29
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=88.04 E-value=4.6 Score=40.07 Aligned_cols=39 Identities=23% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCC
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRI 55 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~ 55 (458)
..+|+||+-|.+.|..+|....+.... - .+.++||-...
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~-~~~a~~Vd~~~ 59 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--I-EVEAVHVDHGL 59 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--c-eEEEEEecCCC
Confidence 589999999999999998877664432 3 49999997653
No 30
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=87.65 E-value=5.6 Score=39.01 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=29.2
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
.+++|+||+.|...|.-++.++.+. |.. ++.||+..
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g~~-v~av~~~~ 46 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----GTE-VLAITVVS 46 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----CCC-EEEEEecC
Confidence 3678999999999999999888663 553 88999853
No 31
>PTZ00121 MAEBL; Provisional
Probab=85.91 E-value=14 Score=44.34 Aligned_cols=21 Identities=0% Similarity=-0.078 Sum_probs=10.9
Q ss_pred ccCCCCC-CCeEEEeecCCHHh
Q 012682 7 VELPNSP-ALSVAVAVKGNRKS 27 (458)
Q Consensus 7 ~~~~~~~-~~~ILVAVDgS~~S 27 (458)
-.|+-|. +++|++-.++++.+
T Consensus 86 y~GsCPnYGKtf~m~l~~~eyn 107 (2084)
T PTZ00121 86 YKGGCPDYGKTFLMDFEDDEYN 107 (2084)
T ss_pred ecCCCCCccceEEEecccchhh
Confidence 3344343 45566666666554
No 32
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.90 E-value=14 Score=43.33 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=48.0
Q ss_pred CCccchhhHHHHHHHHHHHH-------HHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 012682 319 SSSESQVDVNFELEKLRIEL-------RHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEK 391 (458)
Q Consensus 319 ~~s~~~~~~eaEm~rLrlEL-------k~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK 391 (458)
+.++...+++.-|+.||.+- |+....-.+|..+|.+|+|++..|+..-.--.+-++.--...++|++-||+=+
T Consensus 1616 ~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~ 1695 (1758)
T KOG0994|consen 1616 SATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLR 1695 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 44555688999999999655 44555555666666666666665554322111122222222334444444433
Q ss_pred HHHHHHH-HHHHHHHHhHHHH
Q 012682 392 KKYETAR-REAECARASAEKE 411 (458)
Q Consensus 392 ~k~~aA~-eaaE~a~~~ae~E 411 (458)
.+.+.-. ++-++.++|-+||
T Consensus 1696 ~eA~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1696 TEAEKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 2234555566665
No 33
>PRK13820 argininosuccinate synthase; Provisional
Probab=82.86 E-value=14 Score=38.96 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
+.++|+||+.|...|.-++.|+.+.+ |-.+++.+|+-.
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e~~---g~~~Viav~vd~ 38 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKEKY---GYDEVITVTVDV 38 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHHhc---CCCEEEEEEEEC
Confidence 35799999999999999999986532 321389999854
No 34
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=80.98 E-value=37 Score=38.49 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=12.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 012682 401 AECARASAEKEAAQRQEAEMK 421 (458)
Q Consensus 401 aE~a~~~ae~Ea~kR~~aE~k 421 (458)
+|..|+.+..|-.+|..+|+.
T Consensus 966 ~eEeqr~~qee~e~~l~~e~q 986 (1259)
T KOG0163|consen 966 AEEEQRKAQEEEERRLALELQ 986 (1259)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 455566666666666666554
No 35
>PRK12342 hypothetical protein; Provisional
Probab=79.77 E-value=21 Score=35.31 Aligned_cols=88 Identities=17% Similarity=0.089 Sum_probs=55.3
Q ss_pred cCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 012682 22 KGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLP 101 (458)
Q Consensus 22 DgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a~~lL~~ 101 (458)
..++...+||+.|+.+- ..|. ++++|++=++. . + ...++..
T Consensus 32 ~iNp~D~~AlE~AlrLk-~~g~-~Vtvls~Gp~~----------------a---------~------------~~~l~r~ 72 (254)
T PRK12342 32 KISQFDLNAIEAASQLA-TDGD-EIAALTVGGSL----------------L---------Q------------NSKVRKD 72 (254)
T ss_pred cCChhhHHHHHHHHHHh-hcCC-EEEEEEeCCCh----------------H---------h------------HHHHHHH
Confidence 35788999999999976 5566 48888874321 0 0 0112233
Q ss_pred HHHHhhcCCCeEEEEEEecCCH---HHHHHHHHHhCCCCEEEEccCCCCC
Q 012682 102 FRNMCAQRRVEVEVKVIESDDV---AKAIADEVASCNINKLVIGAQSQGI 148 (458)
Q Consensus 102 ~~~~~~~~gV~ve~vvle~Gdp---a~aIve~A~e~~aDlIVmGS~grs~ 148 (458)
+..+-...++.+....+.+.|+ +.+|..++++.++|||+.|...--+
T Consensus 73 alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~ 122 (254)
T PRK12342 73 VLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDL 122 (254)
T ss_pred HHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 3233223333333222334577 8999999999999999999876544
No 36
>PTZ00121 MAEBL; Provisional
Probab=79.08 E-value=37 Score=41.10 Aligned_cols=31 Identities=6% Similarity=0.128 Sum_probs=15.3
Q ss_pred cccccCCCCCCC-eEEE-eecCCHH-hHHHHHHH
Q 012682 4 KDIVELPNSPAL-SVAV-AVKGNRK-SRYAVLWA 34 (458)
Q Consensus 4 ~~~~~~~~~~~~-~ILV-AVDgS~~-S~~AL~wA 34 (458)
+.+-.|+-|-|. .|+| ..|++.. ...-+.|-
T Consensus 664 pgra~GSCPNYGK~i~v~~l~~~~~d~~~n~~fL 697 (2084)
T PTZ00121 664 EGRAHGSCPNYGKAIIVENLEGEEEDKNFNLEFL 697 (2084)
T ss_pred cccccCCCCCCCceEEEecccccccchhhhHHHH
Confidence 344455555444 4555 3777742 22334443
No 37
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=78.96 E-value=20 Score=33.46 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=25.8
Q ss_pred EEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 17 ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
|+|++.|...|..++.++.+.. +.. ++.|||..
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~-v~~v~vd~ 33 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDR-VLAVTATS 33 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCc-EEEEEeCC
Confidence 6899999999999998887643 223 88889853
No 38
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=77.46 E-value=23 Score=32.65 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHH--HHHHHHHHH
Q 012682 371 TRLSEIQLLEEKAIELAK---QEKKKYETARREAECARASAE--KEAAQRQEA 418 (458)
Q Consensus 371 ~k~eea~~~ee~a~~~ae---~EK~k~~aA~eaaE~a~~~ae--~Ea~kR~~a 418 (458)
...+.+...-=.|+.++- +|-.||-++|+..|.|+..|| +..|++..+
T Consensus 103 e~~~~~~~~lleAkk~asqYQkEAeKCnsgmeTCEeAREkaEa~L~~e~Klta 155 (176)
T PF06364_consen 103 ENQRRADMALLEAKKMASQYQKEAEKCNSGMETCEEAREKAEAALVEERKLTA 155 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555554 888999999999999999887 455555433
No 39
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=77.41 E-value=9.9 Score=38.56 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
.+.+|+|++-|.+.|.-.|..|...+...+-. +.+|||-.
T Consensus 26 ~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~-~~vl~iDT 65 (301)
T PRK05253 26 EFENPVMLYSIGKDSSVMLHLARKAFYPGKLP-FPLLHVDT 65 (301)
T ss_pred hCCCEEEEecCCHHHHHHHHHHHHhhcccCCC-eeEEEEeC
Confidence 35789999999999999998887755432333 88999854
No 40
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=75.71 E-value=35 Score=33.93 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHh
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVND 361 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~e 361 (458)
...+..|+.+-=-||.-++..|..+|+++..|.+|+.+
T Consensus 119 ~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~ 156 (264)
T cd07654 119 LQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAAD 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35677788888899999999999999999999999876
No 41
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=75.22 E-value=43 Score=36.28 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=5.3
Q ss_pred CCCEEEEccC
Q 012682 135 NINKLVIGAQ 144 (458)
Q Consensus 135 ~aDlIVmGS~ 144 (458)
++|.|+||..
T Consensus 66 ~ADi~~ig~~ 75 (489)
T PF05262_consen 66 DADIFIIGEN 75 (489)
T ss_pred CCcEEEEcCC
Confidence 4555555544
No 42
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=75.20 E-value=84 Score=30.55 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=60.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHH---------------HhhhhhhhhHhhhhHHHHHHHHHHHHH
Q 012682 322 ESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKV---------------NDLNKCKLEEETRLSEIQLLEEKAIEL 386 (458)
Q Consensus 322 ~~~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~---------------~eL~~~k~EE~~k~eea~~~ee~a~~~ 386 (458)
+--+|++.+|.++|-.+=+++.--....++.=.++..+ ..|-+.-+++...+++.....++.+..
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~ 110 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQ 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888777666655544444443333332 235555577778888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 012682 387 AKQEKKKYETARREAECARASAEKEAAQR 415 (458)
Q Consensus 387 ae~EK~k~~aA~eaaE~a~~~ae~Ea~kR 415 (458)
+..-.++-+..+.+.| ++|+++++++.
T Consensus 111 ~~~~~~~l~~~~~~Le--~Ki~e~~~~~~ 137 (225)
T COG1842 111 AEEQVEKLKKQLAALE--QKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 7777777776666543 67888877775
No 43
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=75.19 E-value=12 Score=38.23 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHH--HhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 012682 330 ELEKLRIELRHVRGMYAIAQNEAND--ASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARRE--AECAR 405 (458)
Q Consensus 330 Em~rLrlELk~t~~mY~~Ac~Ea~~--Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~ea--aE~a~ 405 (458)
+|..|.-=|+-.+.++...-+=.++ +++|+..+...-.++-.|..+..-.||++..-.|++|++.++-+.. +|..+
T Consensus 229 ~~~~~~~l~~~v~~l~D~~~~~~l~~e~~~K~~k~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~lspeeQr 308 (321)
T PF07946_consen 229 DMEALEPLLKLVFYLIDKLARFKLSPEAKKKAKKNREEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSKLSPEEQR 308 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhheeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4555555566666666655533332 3556666655556666666666666665555555444443322221 34444
Q ss_pred HhHHHHHHH
Q 012682 406 ASAEKEAAQ 414 (458)
Q Consensus 406 ~~ae~Ea~k 414 (458)
++-|+|..|
T Consensus 309 K~eeKe~kk 317 (321)
T PF07946_consen 309 KYEEKERKK 317 (321)
T ss_pred HHHHHHHHH
Confidence 444444433
No 44
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=74.83 E-value=34 Score=33.45 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAEC 403 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~ 403 (458)
-..+..|+...--||..++.-|..+|+|+-.|++|..+.-...---.+.++.++..=..+..-+.+=|-.+..++.+|-.
T Consensus 114 ~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~ 193 (237)
T cd07657 114 RQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQE 193 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888899999999999999999999999865432110012233334433333333333344445555555544
Q ss_pred HHH
Q 012682 404 ARA 406 (458)
Q Consensus 404 a~~ 406 (458)
.|.
T Consensus 194 ~q~ 196 (237)
T cd07657 194 HEE 196 (237)
T ss_pred HHH
Confidence 443
No 45
>PTZ00491 major vault protein; Provisional
Probab=73.25 E-value=45 Score=38.36 Aligned_cols=44 Identities=27% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHH
Q 012682 401 AECARASAEKEAAQRQEAEMKAKHEAKEKEMLERALNGLEWEDMELS 447 (458)
Q Consensus 401 aE~a~~~ae~Ea~kR~~aE~ka~~e~~ek~k~~~~l~~YtieEIe~A 447 (458)
.+..|+++++|-+|.++. |.-|++.-.+++++|-.=||.+|..|
T Consensus 765 ~~~~~~~~~le~~k~~~l---a~ie~~kf~~~v~aig~~T~~~iA~a 808 (850)
T PTZ00491 765 LEYEQAQNELEIAKAKEL---ADIEATKFERIVEALGRETLIAIARA 808 (850)
T ss_pred HHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHhhChHHHHHHHHh
Confidence 445555666665553221 12233444566777766888888776
No 46
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=72.99 E-value=40 Score=33.83 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=63.0
Q ss_pred HHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Q 012682 349 QNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMKAKHEAKE 428 (458)
Q Consensus 349 c~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~~ae~Ea~kR~~aE~ka~~e~~e 428 (458)
.+||=.|.+|++.-...-..|.+|-+..+...+--..-+|+||.|...--..++..+--.|.|-|+..+..-+..++-.+
T Consensus 133 kkeaEnaRdkANKSgIELEQErQKT~q~~~e~~n~qiK~EQEKQKTeqEkQk~~ksqIklEQEkQKT~qeqqkliKeQKD 212 (398)
T PF05917_consen 133 KKEAENARDKANKSGIELEQERQKTEQEGIETTNNQIKVEQEKQKTEQEKQKENKSQIKLEQEKQKTEQEQQKLIKEQKD 212 (398)
T ss_pred HHHhhhhhhhhccccchHHHHHHHHHHHhhhhhHhHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888999877777677888888888888888888999999887766667777777888888887777776666544
Q ss_pred H
Q 012682 429 K 429 (458)
Q Consensus 429 k 429 (458)
-
T Consensus 213 f 213 (398)
T PF05917_consen 213 F 213 (398)
T ss_pred H
Confidence 3
No 47
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=72.84 E-value=61 Score=33.03 Aligned_cols=13 Identities=46% Similarity=0.470 Sum_probs=5.3
Q ss_pred HHHHHHHHHhHHH
Q 012682 398 RREAECARASAEK 410 (458)
Q Consensus 398 ~eaaE~a~~~ae~ 410 (458)
..++|.++.-|+-
T Consensus 177 ~kA~eeAkaKAe~ 189 (387)
T COG3064 177 AKAAEEAKAKAEA 189 (387)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 48
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.43 E-value=72 Score=31.33 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhh
Q 012682 332 EKLRIELRHVRGMYAIAQNEANDASRKVNDLN 363 (458)
Q Consensus 332 ~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~ 363 (458)
.-|...|+|..+-...|..+...+..++..|.
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Le 39 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELE 39 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888888888888888888888873
No 49
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.45 E-value=13 Score=39.09 Aligned_cols=65 Identities=23% Similarity=0.217 Sum_probs=42.4
Q ss_pred HhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012682 350 NEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMK 421 (458)
Q Consensus 350 ~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~~ae~Ea~kR~~aE~k 421 (458)
+=...|++|+.-+.+|..|+..|+=.+.-.|-+...-+|++||+.+.++- --.-|.|+|++++-+
T Consensus 359 ~lS~~~k~kt~~~RQ~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~kekl~a-------~~d~Ek~rr~Eaker 423 (440)
T KOG2357|consen 359 FLSKDAKAKTDKNRQRVEEEFLKLTHAARQEAAQEKKAEKKKAEKEKLKA-------SGDPEKQRRKEAKER 423 (440)
T ss_pred hchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCHHHHHHHHHHHH
Confidence 34567899999999999999988877777666666666666655443322 223455555554433
No 50
>PLN00200 argininosuccinate synthase; Provisional
Probab=71.02 E-value=54 Score=34.72 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=29.8
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
.++|+|++.|.-.|.-++.|+.+.+ |. +++.||+-..
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e~~---G~-eViav~id~G 41 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRENY---GC-EVVCFTADVG 41 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHhh---CC-eEEEEEEECC
Confidence 4699999999999999999997632 45 4889998643
No 51
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=70.92 E-value=48 Score=34.96 Aligned_cols=82 Identities=24% Similarity=0.194 Sum_probs=58.5
Q ss_pred HHHHHHHhHHHHHHHhHHHHhHHH--HhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHH
Q 012682 336 IELRHVRGMYAIAQNEANDASRKV--NDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAE-CARASAEKEA 412 (458)
Q Consensus 336 lELk~t~~mY~~Ac~Ea~~Ak~k~--~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE-~a~~~ae~Ea 412 (458)
.|=+++-+--=---+|++.|++.+ .|+-....|.+.+.+.-+++.|.|+.-+..||+.-+.--+||- ++|.-|.-|-
T Consensus 365 ~ee~~a~dea~~e~~~a~eAekqa~~eE~L~k~~eqEa~ienkq~~~EkARedaa~EkA~dkeEq~AA~TAaq~eA~Eel 444 (672)
T KOG4722|consen 365 FEEFLAEDEAFFEIFEAFEAEKQAFFEEFLDKFFEQEACIENKQLADEKAREDAAEEKAADKEEQEAAATAAQAEAAEEL 444 (672)
T ss_pred HHHHhhhhHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 555666665555678899998886 5666666777788999999999999999999987766555544 3444455555
Q ss_pred HHHHH
Q 012682 413 AQRQE 417 (458)
Q Consensus 413 ~kR~~ 417 (458)
|+|++
T Consensus 445 Q~kIq 449 (672)
T KOG4722|consen 445 QCKIQ 449 (672)
T ss_pred HHHHH
Confidence 65543
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.10 E-value=50 Score=37.49 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEA 352 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea 352 (458)
.++|.|+++||.|||+.-+-...+-.|.
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999877555544443
No 53
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=69.76 E-value=67 Score=31.46 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhh
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKC 365 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~ 365 (458)
..+..||.+-=-||.-+|.-|..+|+||..|++|+.+....
T Consensus 120 ~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~ 160 (241)
T cd07656 120 SQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQ 160 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777777899999999999999999999998776544
No 54
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=69.60 E-value=25 Score=38.33 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=54.6
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012682 363 NKCKLEEETRLSEIQLLEEKAIELAK-QEKKKYETARREAECARASAEKEAAQRQEAEMKAKHEAKEKEMLE 433 (458)
Q Consensus 363 ~~~k~EE~~k~eea~~~ee~a~~~ae-~EK~k~~aA~eaaE~a~~~ae~Ea~kR~~aE~ka~~e~~ek~k~~ 433 (458)
.++..||-+|++|-++.|+...+.+| .|+++-+++....|..+.-.|.|-..|...|.+-.+..+|+.+-.
T Consensus 619 r~Re~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERLEreRM~ve~eRr~eq 690 (940)
T KOG4661|consen 619 RRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLERERMKVEEERRDEQ 690 (940)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 34456777889999999998888887 567777888888888888888888888888887777666665443
No 55
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=69.47 E-value=50 Score=34.39 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=31.6
Q ss_pred CCCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 9 LPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 9 ~~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
+|-+...++||++-|.-.|--|+-++.. .|. .++.||+..
T Consensus 167 lP~g~~~kvlvllSGGiDS~vaa~ll~k----rG~-~V~av~~~~ 206 (371)
T TIGR00342 167 LPVGTQGKVLALLSGGIDSPVAAFMMMK----RGC-RVVAVHFFN 206 (371)
T ss_pred cCcCcCCeEEEEecCCchHHHHHHHHHH----cCC-eEEEEEEeC
Confidence 3445688999999999999998877754 366 499999863
No 56
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=69.26 E-value=8 Score=33.13 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcCCccc
Q 012682 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLS 181 (458)
Q Consensus 123 pa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kgk~~ 181 (458)
++.+.++.|.+.++..||+=+.+ |. ++..|.+.=|. ||||++...+-.
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s---------G~-ta~~isk~RP~-~pIiavt~~~~~ 51 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES---------GR-TARLISKYRPK-VPIIAVTPNESV 51 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS---------SH-HHHHHHHT-TS-SEEEEEESSHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------ch-HHHHHHhhCCC-CeEEEEcCcHHH
Confidence 56778899999999999988775 53 78888888885 999999886554
No 57
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=68.75 E-value=1.3e+02 Score=35.97 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHh
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVND 361 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~e 361 (458)
..+++.++++-..|+.||..|-..|=.+|-.||+||+.
T Consensus 1417 A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~ 1454 (1758)
T KOG0994|consen 1417 AGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQR 1454 (1758)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 47889999999999999999999999999999999754
No 58
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=66.96 E-value=76 Score=29.07 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 012682 441 WEDMELSI 448 (458)
Q Consensus 441 ieEIe~AT 448 (458)
|++|...+
T Consensus 112 ~~~~~~~~ 119 (155)
T PRK06569 112 IEDINLAA 119 (155)
T ss_pred HHHHHHHH
Confidence 33333333
No 59
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=66.93 E-value=90 Score=28.40 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=28.1
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
+|+|++-|...|.-++.|+.+ .|. +++.||+-..
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~-~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGI-EVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCC-eEEEEEEeCC
Confidence 589999999999999998876 255 4999999654
No 60
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=66.89 E-value=1.1e+02 Score=35.23 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 348 AQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECAR 405 (458)
Q Consensus 348 Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~ 405 (458)
+.+|+=.|.+++.+..+-+..|++||.+.....|+=+-+.|+|+-+.++.-+.++.-+
T Consensus 585 ~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~ 642 (988)
T KOG2072|consen 585 VEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLK 642 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666777777777777777777777777776666555555554443
No 61
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=66.81 E-value=42 Score=35.06 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHH------------HHhHH--HHHHHhHHHH-----hHHHHhhhhhhhhHhhhhHH---HHHHHHH
Q 012682 325 VDVNFELEKLRIELRH------------VRGMY--AIAQNEANDA-----SRKVNDLNKCKLEEETRLSE---IQLLEEK 382 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~------------t~~mY--~~Ac~Ea~~A-----k~k~~eL~~~k~EE~~k~ee---a~~~ee~ 382 (458)
+.++|.|+-.|++++. .-+.| ..+|.-.+.| +||+.+|++...-|-.||.+ -.|+||+
T Consensus 301 Q~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEET 380 (593)
T KOG4807|consen 301 QALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEET 380 (593)
T ss_pred HHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5667777777777653 33444 3588888876 77888898877666666654 4578887
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHH
Q 012682 383 AIEL---AKQEKKKYETARREAECAR 405 (458)
Q Consensus 383 a~~~---ae~EK~k~~aA~eaaE~a~ 405 (458)
|-.+ -.|.+|....-.++.|..|
T Consensus 381 AATiSAIEAMKnAhrEEmeRELeKsq 406 (593)
T KOG4807|consen 381 AATISAIEAMKNAHREEMERELEKSQ 406 (593)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 6544 3455555544444444444
No 62
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.68 E-value=49 Score=35.23 Aligned_cols=87 Identities=8% Similarity=0.021 Sum_probs=55.3
Q ss_pred HhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 26 KSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNM 105 (458)
Q Consensus 26 ~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~ 105 (458)
.--.||..|++.+...+.+ |+.|.|+++.... .| .. -..-+.+-|..+.+.
T Consensus 36 ~DN~aL~~A~~~a~~~~~~-vl~vyi~dp~~~~-----------~~----------~~-------r~~Fl~esL~~L~~~ 86 (454)
T TIGR00591 36 QDNWALIAAQTLALKKKLP-LHVCFCLVDFFLA-----------AT----------RR-------HYFFMLGGLDEVANE 86 (454)
T ss_pred cCCHHHHHHHHHHHHcCCC-EEEEEEeCCCccc-----------cc----------HH-------HHHHHHHHHHHHHHH
Confidence 3446777776654434555 8899998764210 01 00 112223445555666
Q ss_pred hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 012682 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (458)
Q Consensus 106 ~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~ 144 (458)
+.+.|+.. +++. |+|.+.|.+++++++|+.|+.-..
T Consensus 87 L~~~g~~L--~v~~-g~~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 87 CERLIIPF--HLLD-GPPKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHcCCce--EEee-cChHHHHHHHHHHcCCCEEEEecc
Confidence 66677765 3334 999999999999999999998764
No 63
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=66.52 E-value=1.3e+02 Score=34.63 Aligned_cols=106 Identities=24% Similarity=0.277 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHH------------HHHHHHHHHH
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEE------------KAIELAKQEK 391 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee------------~a~~~ae~EK 391 (458)
...++.|+.++..||....|||...-.+.--.+.|+..|...=-+.++.+.+.+.+-- .-+.-+-.||
T Consensus 366 ~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~ek 445 (775)
T PF10174_consen 366 IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREK 445 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 4678889999999999999999999888888888866665544455565655544433 2233444555
Q ss_pred HHHHHHHHHHH--HH-HHhHHHHHHHHHHHHHHhhhHHHHH
Q 012682 392 KKYETARREAE--CA-RASAEKEAAQRQEAEMKAKHEAKEK 429 (458)
Q Consensus 392 ~k~~aA~eaaE--~a-~~~ae~Ea~kR~~aE~ka~~e~~ek 429 (458)
.|....+++.- .. .+.-+++.+++...+.++..+.-++
T Consensus 446 er~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~ 486 (775)
T PF10174_consen 446 ERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQK 486 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555554331 11 2234556667666666666555544
No 64
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=66.15 E-value=89 Score=39.47 Aligned_cols=81 Identities=28% Similarity=0.348 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 326 DVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECAR 405 (458)
Q Consensus 326 ~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~ 405 (458)
+.+.+..+|+..|.-..+--..+-+|.=++++.+.+|.....|-.+++.|. |.++...++||+.-++|++++|++-
T Consensus 1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~el----ek~~r~le~e~~elQ~aLeElE~~l 1542 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHEL----EKEKRRLEQEKEELQAALEELEAAL 1542 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444333444444444444555544444444444433 3444455555555566666666554
Q ss_pred HhHHH
Q 012682 406 ASAEK 410 (458)
Q Consensus 406 ~~ae~ 410 (458)
+..+.
T Consensus 1543 e~eE~ 1547 (1930)
T KOG0161|consen 1543 EAEED 1547 (1930)
T ss_pred hhhhh
Confidence 44443
No 65
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=65.63 E-value=30 Score=36.87 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=30.1
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHh-ccCCCCeEEEEEEecC
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKF-IPEGINLFKLLHVRPR 54 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a-~~~g~~~l~LLHV~~~ 54 (458)
.+..+|+||+.|...|...+....... ...+- .|+++||-..
T Consensus 13 ~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~-~l~a~hvnhg 55 (436)
T PRK10660 13 LTSRQILVAFSGGLDSTVLLHLLVQWRTENPGV-TLRAIHVHHG 55 (436)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHHHHHHhcCCC-eEEEEEEeCC
Confidence 346899999999999987776665432 12244 4999999643
No 66
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=64.96 E-value=58 Score=34.34 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=27.5
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
+|+||+.|.-.|.-++.|+.+. |. +++.||+-.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~-~V~av~id~ 33 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GY-EVIAYTADV 33 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CC-EEEEEEEec
Confidence 5899999999999999998763 55 499999954
No 67
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=64.76 E-value=1.2e+02 Score=29.13 Aligned_cols=66 Identities=21% Similarity=0.131 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHH-hHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 333 KLRIELRHVRGMYAIAQNEANDA-SRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETAR 398 (458)
Q Consensus 333 rLrlELk~t~~mY~~Ac~Ea~~A-k~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~ 398 (458)
|.|-|.+-||..|.+.-.-+|.= -+||-.....|.--.+++.+.....+..-..+..-|.|+.++.
T Consensus 153 rvRDEIrMt~aAYqtlyeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e 219 (259)
T KOG4001|consen 153 RVRDEIRMTFAAYQTLYESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDE 219 (259)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 56788899999998876555432 4555555555555555566665555555555555566665443
No 68
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=64.55 E-value=12 Score=39.66 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhh
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDL 362 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL 362 (458)
..++|+||+|||.|||+..+|--.|.|+--+-.++++|-
T Consensus 430 s~~~e~e~~rl~~e~k~~~q~~~~~~k~~~~~~~~i~ee 468 (476)
T KOG0646|consen 430 SLELEAEVDRLKTELKRSLQALTHAYKELRNMLEEIYEE 468 (476)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467899999999999999988777766665555555443
No 69
>PRK00509 argininosuccinate synthase; Provisional
Probab=64.34 E-value=90 Score=33.02 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=29.9
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
..+|+|++.|.-.|--++.|+.+.+ |. +++.||+...
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~l---G~-eViavt~d~G 38 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETY---GC-EVIAFTADVG 38 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhh---CC-eEEEEEEecC
Confidence 3689999999999999999987743 45 4899998643
No 70
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=64.09 E-value=74 Score=28.64 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=26.0
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
+|+|++-|...|..++.++.+ .+.. ++.+|+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~-v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYE-VHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCc-EEEEEEEC
Confidence 589999999999999888765 2443 88899853
No 71
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=64.04 E-value=64 Score=26.60 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=25.7
Q ss_pred EEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 17 ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
|+|++.|...|...+.++.+. +. ++.++||-+.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~----~~-~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL----GY-QVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh----CC-CEEEEEEcCC
Confidence 689999999999888887663 22 3899998544
No 72
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=63.45 E-value=37 Score=30.64 Aligned_cols=78 Identities=6% Similarity=0.073 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
.+-|..+...+...|+.. +++. |++.+.|.+++++.+|+.|+.-.. .+...+..-- .|...+-+ .. |.|..+
T Consensus 52 ~~sL~~L~~~L~~~g~~L--~v~~-g~~~~~l~~l~~~~~~~~V~~~~~-~~~~~~~rd~-~v~~~l~~-~~--i~~~~~ 123 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPL--LVLR-GDPEEVLPELAKEYGATAVYFNEE-YTPYERRRDE-RVRKALKK-HG--IKVHTF 123 (165)
T ss_dssp HHHHHHHHHHHHHTTS-E--EEEE-SSHHHHHHHHHHHHTESEEEEE----SHHHHHHHH-HHHHHHHH-TT--SEEEEE
T ss_pred HHHHHHHHHHHHhcCcce--EEEe-cchHHHHHHHHHhcCcCeeEeccc-cCHHHHHHHH-HHHHHHHh-cc--eEEEEE
Confidence 445556666666778764 3444 999999999999999999997755 3333332222 24444433 22 788777
Q ss_pred cCCccc
Q 012682 176 EKGKLS 181 (458)
Q Consensus 176 ~kgk~~ 181 (458)
....+.
T Consensus 124 ~~~~L~ 129 (165)
T PF00875_consen 124 DDHTLV 129 (165)
T ss_dssp --SSSS
T ss_pred CCcEEE
Confidence 665544
No 73
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=63.43 E-value=38 Score=33.54 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=52.5
Q ss_pred CCHHhHHHHHHHHHHhccCC-CCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 012682 23 GNRKSRYAVLWALEKFIPEG-INLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLP 101 (458)
Q Consensus 23 gS~~S~~AL~wAl~~a~~~g-~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a~~lL~~ 101 (458)
.++...+||+.|+.+-...+ . ++++|++=++.. .....|..
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~-~Vtvvs~Gp~~a-------------------------------------~~~~~lr~ 75 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEA-QVTALSVGGKAL-------------------------------------TNAKGRKD 75 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCC-EEEEEEECCcch-------------------------------------hhHHHHHH
Confidence 56788999999998765443 4 588888743310 00122333
Q ss_pred HHHHhhcCCCeEEEEEEecC---CHHHHHHHHHHhCCCCEEEEccCCCCC
Q 012682 102 FRNMCAQRRVEVEVKVIESD---DVAKAIADEVASCNINKLVIGAQSQGI 148 (458)
Q Consensus 102 ~~~~~~~~gV~ve~vvle~G---dpa~aIve~A~e~~aDlIVmGS~grs~ 148 (458)
+..+-...+|.+...-+.+. ..+..|..++++.++|||+.|...--+
T Consensus 76 aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~ 125 (256)
T PRK03359 76 VLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDL 125 (256)
T ss_pred HHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccC
Confidence 22322222333222211222 347788899999999999999887544
No 74
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=62.95 E-value=89 Score=27.33 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=26.2
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
+|+|++-|.+.|...+..+.+..... .. +.++|+-
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~-~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KP-VPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cC-ceEEEeC
Confidence 58999999999998888877644321 23 7888874
No 75
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=62.34 E-value=1.3e+02 Score=32.97 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQN 350 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~ 350 (458)
+.+..||.+.|.||..+......+.-
T Consensus 312 esL~~ELe~~K~el~~lke~e~~a~~ 337 (522)
T PF05701_consen 312 ESLRSELEKEKEELERLKEREKEASS 337 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666555555554444
No 76
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=61.13 E-value=21 Score=32.93 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=12.8
Q ss_pred ccchhhHHHHHHHHHHH
Q 012682 321 SESQVDVNFELEKLRIE 337 (458)
Q Consensus 321 s~~~~~~eaEm~rLrlE 337 (458)
.-+.++|+ ||++||.|
T Consensus 85 ~Lt~e~i~-Eir~LR~~ 100 (164)
T PF12824_consen 85 HLTPEDIQ-EIRRLRAE 100 (164)
T ss_pred cCCHHHHH-HHHHHHHc
Confidence 34457888 99999998
No 77
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=60.89 E-value=48 Score=33.54 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=29.2
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
+.+++|++-|.+.|.-.|..|.+.+...+-+ |.+|||-.
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p-~~vl~IDT 57 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLP-FPLLHVDT 57 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCC-eEEEEEec
Confidence 4566889999999999998887765433343 89999943
No 78
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=60.60 E-value=1.1e+02 Score=27.06 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=25.4
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
.|+|++-|...|-.++.++.+.. +-. +.++|+-
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~-v~~v~~~ 35 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLN-PLAVTVD 35 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCc-eEEEEeC
Confidence 68999999999999998887643 223 7778874
No 79
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=60.55 E-value=89 Score=35.85 Aligned_cols=7 Identities=14% Similarity=-0.007 Sum_probs=3.0
Q ss_pred HHhHHHH
Q 012682 349 QNEANDA 355 (458)
Q Consensus 349 c~Ea~~A 355 (458)
-+|.|..
T Consensus 758 f~e~vk~ 764 (988)
T KOG2072|consen 758 FKEHVKG 764 (988)
T ss_pred HHHHHhh
Confidence 3444443
No 80
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=60.51 E-value=71 Score=31.69 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHH-------HHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRI-------ELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETA 397 (458)
Q Consensus 325 ~~~eaEm~rLrl-------ELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA 397 (458)
.+++..++|+.. +|-.+.+-|..+|+|+=.|..+......--.==...++.++..-+.+...|++=|..++.+
T Consensus 115 K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~ 194 (258)
T cd07680 115 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKV 194 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778887774 4556778999999998888755331110000001234556666777777788888888877
Q ss_pred HHHHHHH
Q 012682 398 RREAECA 404 (458)
Q Consensus 398 ~eaaE~a 404 (458)
++..+..
T Consensus 195 l~~ln~~ 201 (258)
T cd07680 195 LDDVGKT 201 (258)
T ss_pred HHHHHHh
Confidence 7765443
No 81
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=60.48 E-value=1.6e+02 Score=28.23 Aligned_cols=58 Identities=24% Similarity=0.329 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhh----hhhhHhhhhHHHHHHHH
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNK----CKLEEETRLSEIQLLEE 381 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~----~k~EE~~k~eea~~~ee 381 (458)
-...|.+++..|.++++...-|..|...--+.++.+++|=+ |--.+-.||=+.--.+-
T Consensus 41 i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH 102 (207)
T PF05546_consen 41 IEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDH 102 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhh
Confidence 36778899999999999999999999999999999999754 45666666666554444
No 82
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=59.31 E-value=1.4e+02 Score=30.35 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=28.6
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
++|+||+.|...|.-++.++.+.+ |. +++.|||-..
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~---G~-~v~av~vd~G 52 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI---GD-RLTCVFVDHG 52 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh---CC-CEEEEEEeCC
Confidence 789999999999988888776533 45 4999999643
No 83
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=59.01 E-value=45 Score=33.13 Aligned_cols=88 Identities=22% Similarity=0.132 Sum_probs=53.2
Q ss_pred eecCCHHhHHHHHHHHHHhc-cCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 012682 20 AVKGNRKSRYAVLWALEKFI-PEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRL 98 (458)
Q Consensus 20 AVDgS~~S~~AL~wAl~~a~-~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a~~l 98 (458)
+..-++...+|++.|+.+-. ..+. ++++|++=|+. +++.
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~~-eV~vlt~Gp~~---------------------------------------a~~~ 71 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYGG-EVTVLTMGPPQ---------------------------------------AEEA 71 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCCc-eEEEEEecchh---------------------------------------hHHH
Confidence 33445788999999999776 3556 59999873321 1222
Q ss_pred HHHHHHHhhcCCCeEEEEEEecC---CHHHHHHHHHHhCCCCEEEEccCCCC
Q 012682 99 LLPFRNMCAQRRVEVEVKVIESD---DVAKAIADEVASCNINKLVIGAQSQG 147 (458)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~G---dpa~aIve~A~e~~aDlIVmGS~grs 147 (458)
+..+..+-...++-+...-..+. ..+.+|..++++.+.|||++|...-.
T Consensus 72 lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D 123 (260)
T COG2086 72 LREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAID 123 (260)
T ss_pred HHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 22222222222232322112222 46788999999999999999988643
No 84
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=58.53 E-value=1.4e+02 Score=28.97 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=57.0
Q ss_pred hhHHHHHHHHH-------HHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLR-------IELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETA 397 (458)
Q Consensus 325 ~~~eaEm~rLr-------lELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA 397 (458)
..++.+|.++. ..|.....-|..+|+|+=.|.++......--. .+.++.++..-+.+..-+++-+..++.+
T Consensus 102 K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~--~ke~eK~~~K~~k~~~~~~~a~~~Y~~~ 179 (239)
T cd07647 102 KKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQ--PKEAEKLKKKAAQCKTSAEEADSAYKSS 179 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666665 45667778899999999999877644432111 1345667777777777788888888888
Q ss_pred HHHHHHHHHhHH
Q 012682 398 RREAECARASAE 409 (458)
Q Consensus 398 ~eaaE~a~~~ae 409 (458)
++..+..+.--+
T Consensus 180 v~~l~~~~~~~~ 191 (239)
T cd07647 180 IGCLEDARVEWE 191 (239)
T ss_pred HHHHHHHHHHHH
Confidence 888877765443
No 85
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=58.42 E-value=1.6e+02 Score=27.63 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHH-HhHHHHhh
Q 012682 331 LEKLRIELRHVRGMYAIAQNEAND-ASRKVNDL 362 (458)
Q Consensus 331 m~rLrlELk~t~~mY~~Ac~Ea~~-Ak~k~~eL 362 (458)
+.|+|-|++.|++.|.+--+.++. .-+|+.+-
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~ 118 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQA 118 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999998766666555 34444333
No 86
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=57.67 E-value=1.3e+02 Score=30.02 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=28.3
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
.+|+||..|...|.-.+..|.+.+ |.. +.+|.|..|
T Consensus 18 ~kv~vAfSGGvDSslLa~la~~~l---G~~-v~AvTv~sP 53 (269)
T COG1606 18 KKVVVAFSGGVDSSLLAKLAKEAL---GDN-VVAVTVDSP 53 (269)
T ss_pred CeEEEEecCCccHHHHHHHHHHHh---ccc-eEEEEEecC
Confidence 489999999988888888787755 453 788888765
No 87
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=57.16 E-value=1.7e+02 Score=30.48 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=28.0
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
+..+|+|++.|...|--++.++.+ .|. .++.||+..
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~----~G~-~V~~v~~~~ 39 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE----AGY-EVTGVTFRF 39 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH----cCC-eEEEEEEec
Confidence 457999999999999888877754 355 488888853
No 88
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=55.85 E-value=1.7e+02 Score=28.58 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHH-------HHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRI-------ELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETA 397 (458)
Q Consensus 325 ~~~eaEm~rLrl-------ELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA 397 (458)
..++..|+++.. .|-...+-|..+|+|+=.|.|....+..-... ..++.++..-..+...++.-+..++.+
T Consensus 102 K~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~--keleK~~~K~~k~~~~~~~a~~~Y~~~ 179 (242)
T cd07671 102 KKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNP--KQSEKSQNKAKQCRDAATEAERVYKQN 179 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777653 34445688999999998886543222211111 236677777777788888888889888
Q ss_pred HHHHHHHHHhHH
Q 012682 398 RREAECARASAE 409 (458)
Q Consensus 398 ~eaaE~a~~~ae 409 (458)
++..+..+..-+
T Consensus 180 v~~l~~~~~~w~ 191 (242)
T cd07671 180 IEQLDKARTEWE 191 (242)
T ss_pred HHHHHHHHHHHH
Confidence 887766655433
No 89
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=55.77 E-value=1.3e+02 Score=29.06 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAI-ELAKQEKKKYETARREAE 402 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~-~~ae~EK~k~~aA~eaaE 402 (458)
||.-.+||.||--+.=+-...|.+.||-+=+==++..-.....+-..++|+.+|...-.-+ .+..-|-.=.+|.+++..
T Consensus 81 qDYRqa~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~~~Leklr~k~psdr~~isqae~el~kas~~~~r 160 (219)
T PF06730_consen 81 QDYRQAEVERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQLKQLEKLRQKNPSDRQIISQAESELQKASVDATR 160 (219)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchhhhHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999997755444444444444444556667776655544 233334444455666665
Q ss_pred HHHHhHH
Q 012682 403 CARASAE 409 (458)
Q Consensus 403 ~a~~~ae 409 (458)
..+-|.|
T Consensus 161 t~~~Lee 167 (219)
T PF06730_consen 161 TTKQLEE 167 (219)
T ss_pred HHHHHHH
Confidence 5555544
No 90
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=55.21 E-value=2.8e+02 Score=30.15 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=9.3
Q ss_pred eEEEEEEecCC
Q 012682 45 LFKLLHVRPRI 55 (458)
Q Consensus 45 ~l~LLHV~~~~ 55 (458)
.+.++|++++.
T Consensus 50 ~y~ii~~vd~~ 60 (489)
T PF05262_consen 50 RYYIIHAVDPE 60 (489)
T ss_pred cEEEEEecCcc
Confidence 49999999875
No 91
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=55.01 E-value=80 Score=29.72 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=65.6
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
-++|+.-|.-....+.+.|...... +.. +.|+.. +.. . .|
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~-v~lis~-D~~---R----------~g------------------------ 43 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKK-VALISA-DTY---R----------IG------------------------ 43 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEE-STS---S----------TH------------------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-ccc-ceeecC-CCC---C----------cc------------------------
Confidence 4688888998889999999877655 553 666664 211 0 11
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHH---HHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAI---ADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aI---ve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~V 172 (458)
.++.++.+++..||++...... .||.+.+ ++.....++|+|+|=+.|++......+.. .. .++...++ +.|
T Consensus 44 --a~eQL~~~a~~l~vp~~~~~~~-~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~e-l~-~~~~~~~~-~~~ 117 (196)
T PF00448_consen 44 --AVEQLKTYAEILGVPFYVARTE-SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEE-LK-KLLEALNP-DEV 117 (196)
T ss_dssp --HHHHHHHHHHHHTEEEEESSTT-SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHH-HH-HHHHHHSS-SEE
T ss_pred --HHHHHHHHHHHhccccchhhcc-hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHH-HH-HHhhhcCC-ccc
Confidence 1122333444556665443222 3566644 55666788999999999999865444331 32 23333322 566
Q ss_pred EEE
Q 012682 173 YGV 175 (458)
Q Consensus 173 lVV 175 (458)
++|
T Consensus 118 ~LV 120 (196)
T PF00448_consen 118 HLV 120 (196)
T ss_dssp EEE
T ss_pred eEE
Confidence 655
No 92
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=54.83 E-value=3.2e+02 Score=33.15 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHh
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNE 351 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~E 351 (458)
..++.++..+...|..-......+-+.
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~ 629 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQ 629 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554444444444333333
No 93
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=54.83 E-value=93 Score=33.47 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~ 144 (458)
.+-|..+.+-+...|+.. +++. |+|.+.|.+++++.+|+.|+.-..
T Consensus 54 ~esL~~L~~~L~~~G~~L--~v~~-G~p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 54 IGCLQELQQRYQQAGSQL--LILQ-GDPVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHHHHHHHHHHHHCCCCe--EEEE-CCHHHHHHHHHHHcCCCEEEEecc
Confidence 344555555666678765 3444 999999999999999999996554
No 94
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.59 E-value=2.3e+02 Score=36.02 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECA 404 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a 404 (458)
.+++.+.++...||.++..-..--..+....++++.+|+...- .++|-...|.++++-+++.+......+++...-
T Consensus 1065 ~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~----el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1065 EELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIK----ELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555666555442 244555566677777777776666665553221
Q ss_pred ------HHhHHHHHHHHHHHHHHhhhHHHH
Q 012682 405 ------RASAEKEAAQRQEAEMKAKHEAKE 428 (458)
Q Consensus 405 ------~~~ae~Ea~kR~~aE~ka~~e~~e 428 (458)
.-.+-.|.-+++.+|+.-++..-|
T Consensus 1141 Lee~~~~t~~q~e~~~k~e~e~~~l~~~le 1170 (1930)
T KOG0161|consen 1141 LEEQGGTTAAQLELNKKREAEVQKLRRDLE 1170 (1930)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333555555555555544333
No 95
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=54.35 E-value=11 Score=31.84 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhh
Q 012682 121 DDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISI 164 (458)
Q Consensus 121 Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk 164 (458)
-+-.+.|+++++++++|++|+|.-.. +..| ++..+.+
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE~p-----L~~G--l~D~l~~ 84 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPEAP-----LVAG--LADALRA 84 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSHHH-----HHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEECChHH-----HHHH--HHHHHHH
Confidence 45578899999999999999998642 3345 5555543
No 96
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=53.85 E-value=1.2e+02 Score=28.52 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=26.3
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
+++|++-|.+.|..|+.+|.+ .|. +++.|++..+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~-~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGH-EVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCC-EEEEEEEEec
Confidence 578999999999999999987 244 3666666544
No 97
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.13 E-value=2.2e+02 Score=30.29 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhHHHH----hHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 012682 326 DVNFELEKLRIELRHVRGMYAIAQNEANDA----SRKVNDLNKCKLEEETRLSEIQLLEEKAIELAK---QEKKKYETAR 398 (458)
Q Consensus 326 ~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~A----k~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae---~EK~k~~aA~ 398 (458)
++..++..=|-||+.++.--..=....--. |+....|+....++.++++|.+.-+..+....+ .+-++.+++.
T Consensus 175 ~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~ 254 (420)
T COG4942 175 AVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAA 254 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhH-HHHHHH
Q 012682 399 REAECARASA-EKEAAQ 414 (458)
Q Consensus 399 eaaE~a~~~a-e~Ea~k 414 (458)
++++++..-+ ..|+.+
T Consensus 255 aa~~aa~~~~~~~e~~r 271 (420)
T COG4942 255 AAAEAAAARARAAEAKR 271 (420)
T ss_pred HHHHHHHHHHHHHhhhh
No 98
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=53.07 E-value=1.8e+02 Score=29.44 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=27.2
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
+|+||+-|...|.-++.++.+.+ |. +++.|||-..
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---G~-~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---GD-RLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---CC-cEEEEEecCC
Confidence 58999999999998888876532 45 4999999543
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=53.01 E-value=1.2e+02 Score=32.15 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhHH
Q 012682 324 QVDVNFELEKLRIELRHVRGMY 345 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY 345 (458)
....|+|++||+.|+.|..+=.
T Consensus 50 ~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 50 LQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888876543
No 100
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=52.26 E-value=48 Score=30.83 Aligned_cols=42 Identities=7% Similarity=0.125 Sum_probs=28.9
Q ss_pred CCCEEEEccCCCCCcccccccc--chhHHHhhhCCCCceEEEEc
Q 012682 135 NINKLVIGAQSQGIFTWKFKKN--NLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 135 ~aDlIVmGS~grs~~~r~~lGS--sVs~~Vlk~Ap~~C~VlVV~ 176 (458)
.+|.+||---..+.+.++-.|- +..+.++......+||++++
T Consensus 76 ~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~P 119 (177)
T TIGR02113 76 KADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAP 119 (177)
T ss_pred hhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEe
Confidence 5799999888888888777661 23344455444458999986
No 101
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=51.70 E-value=2.2e+02 Score=30.36 Aligned_cols=74 Identities=26% Similarity=0.304 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAE 402 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE 402 (458)
.|+| ++.|.--+|...++|...|..|-=+---.-..| ..++.|+.+|.|.|.--|--... +|-+.-+.|++.||
T Consensus 249 kdle-~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~l-erkl~ea~rl~elreg~e~e~~r--kelE~lR~~L~kAE 322 (575)
T KOG4403|consen 249 KDLE-GLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDL-ERKLDEAPRLSELREGVENETSR--KELEQLRVALEKAE 322 (575)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhH-HHHHhhhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHH
Confidence 5566 666666788888888888887732211001111 12344677777665433221111 33344444444444
No 102
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=51.52 E-value=2e+02 Score=26.66 Aligned_cols=117 Identities=19% Similarity=0.163 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHH------HHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRK------VNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETAR 398 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k------~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~ 398 (458)
.+-...|+-||.+++.-+.-+.....-+..+.++ -..|..|--++=+++.+.|....+..+-...+..-...+-
T Consensus 34 ~~Yr~~m~alR~~f~ee~~~~~~~~~~~~~~~~~~~ee~E~~~l~a~N~~~N~~~~~~Re~Rl~~e~e~~~~~~l~~~~~ 113 (170)
T PF14943_consen 34 NNYRTQMRALRSEFREEVLRKKYEEEAGSLAETKEEEEEEHRRLMAWNEEWNAEIAELREERLAKEREEREEEILERLER 113 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHH--HHHHHHhcC---CCH
Q 012682 399 REAECARASAEKEAAQRQEAEMKAKHEAKEK--EMLERALNG---LEW 441 (458)
Q Consensus 399 eaaE~a~~~ae~Ea~kR~~aE~ka~~e~~ek--~k~~~~l~~---Yti 441 (458)
.+.+.-..+-..|+.=++..|.-..--..|. .++..||.+ |++
T Consensus 114 ~~~~~~~~~~~~e~~V~~~~e~sk~FIT~ENLd~~IeeALdnp~~YNf 161 (170)
T PF14943_consen 114 KEEEEEERKERKEEEVRQLKEESKNFITRENLDAAIEEALDNPVDYNF 161 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCHHhHHHHHHHHHcCCcccce
No 103
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=51.48 E-value=1.6e+02 Score=29.31 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhh
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNK 364 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~ 364 (458)
-..+..||.+-=.||.-++..|..+|+||-.|+.|+.|...
T Consensus 118 ~~~lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~e~ 158 (263)
T cd07678 118 LQKAQAELLETVKELSKSKKLYGQLERVSEVAKEKAADVEA 158 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777779999999999999999999999987644
No 104
>PRK04863 mukB cell division protein MukB; Provisional
Probab=51.33 E-value=5.7e+02 Score=31.97 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=12.0
Q ss_pred CCHHHHHHHhhccc
Q 012682 439 LEWEDMELSIRALF 452 (458)
Q Consensus 439 YtieEIe~AT~~f~ 452 (458)
+|.+|.+.--++|.
T Consensus 435 ~SdEeLe~~LenF~ 448 (1486)
T PRK04863 435 LTADNAEDWLEEFQ 448 (1486)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999998888875
No 105
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=49.87 E-value=3e+02 Score=31.06 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=11.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHh
Q 012682 415 RQEAEMKAKHEAKEKEMLERAL 436 (458)
Q Consensus 415 R~~aE~ka~~e~~ek~k~~~~l 436 (458)
|+.+|-|-..+.+++.|.-.+.
T Consensus 353 rkK~e~ke~ea~E~rkkr~~ae 374 (811)
T KOG4364|consen 353 RKKLESKEVEAQELRKKRHEAE 374 (811)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 3444555555555555554443
No 106
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=49.63 E-value=3.2e+02 Score=30.32 Aligned_cols=93 Identities=27% Similarity=0.244 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHH--HhHHHHhHHHHhhh----------------hhhhhHhhhhHHHHHHHHHHHHHH
Q 012682 326 DVNFELEKLRIELRHVRGMYAIAQ--NEANDASRKVNDLN----------------KCKLEEETRLSEIQLLEEKAIELA 387 (458)
Q Consensus 326 ~~eaEm~rLrlELk~t~~mY~~Ac--~Ea~~Ak~k~~eL~----------------~~k~EE~~k~eea~~~ee~a~~~a 387 (458)
.|--|++.|=||--|.++|-+.-- |.-|-| |+.+|+ +.|+||..|--|-.++.-.+.++.
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIa--kVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIA--KVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHH--HHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455689999999999988865321 111111 233332 233444333323233333333344
Q ss_pred HHHHHHHH----------HHHHHHHHHHHhHHHHHHHHHHHHH
Q 012682 388 KQEKKKYE----------TARREAECARASAEKEAAQRQEAEM 420 (458)
Q Consensus 388 e~EK~k~~----------aA~eaaE~a~~~ae~Ea~kR~~aE~ 420 (458)
.+.|++|. .-+.-+|+|+=|.|+-++|.+..|+
T Consensus 376 ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMEL 418 (832)
T KOG2077|consen 376 ARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMEL 418 (832)
T ss_pred HHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444432 2344577777777777777766665
No 107
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=49.45 E-value=1.9e+02 Score=28.43 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHH-------HHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 324 QVDVNFELEKLR-------IELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYET 396 (458)
Q Consensus 324 ~~~~eaEm~rLr-------lELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~a 396 (458)
..+++.+|.++. .+|.....-|..+|+|+=.|.++.+....--.==...++.++..-+.+..-++.-+.+++.
T Consensus 114 ~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~ 193 (258)
T cd07655 114 TKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEK 193 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777755 4577788999999999988888876433100000123666666666777777777888888
Q ss_pred HHHHHHHHHH
Q 012682 397 ARREAECARA 406 (458)
Q Consensus 397 A~eaaE~a~~ 406 (458)
++..+..-+.
T Consensus 194 ~l~~~n~~~~ 203 (258)
T cd07655 194 ALEDLNKYNP 203 (258)
T ss_pred HHHHHHhhhH
Confidence 8887766654
No 108
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=49.10 E-value=1.3e+02 Score=29.33 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHh---HHHHhhhhhhhhHhhhhHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDAS---RKVNDLNKCKLEEETRLSEI 376 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak---~k~~eL~~~k~EE~~k~eea 376 (458)
--+.||+++.|.- .-+.-+..-+..--+|+ +|+..-.....|.|++|.||
T Consensus 94 akvraei~~mkVt--~kvn~h~kI~g~rKtA~~~~rKl~~ke~E~~EKErqlSeA 146 (265)
T PF06409_consen 94 AKVRAEIRKMKVT--TKVNSHYKINGKRKTAKKHLRKLSMKECEHAEKERQLSEA 146 (265)
T ss_pred HHHHHHHHHHHHH--HHhhhHHHHhhHHHhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4567788866643 11222222222223333 44444455566677777665
No 109
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=48.36 E-value=2.7e+02 Score=28.04 Aligned_cols=51 Identities=27% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhH--HH--------H--------hHHHHhhhhhhhhHhhhhHHHHH
Q 012682 328 NFELEKLRIELRHVRGMYAIAQNEA--ND--------A--------SRKVNDLNKCKLEEETRLSEIQL 378 (458)
Q Consensus 328 eaEm~rLrlELk~t~~mY~~Ac~Ea--~~--------A--------k~k~~eL~~~k~EE~~k~eea~~ 378 (458)
..|-+|||.|-....-.-..||+=- ++ | .|+.+||.+...||.+|++||..
T Consensus 284 qieterlrqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeaee 352 (445)
T KOG2891|consen 284 QIETERLRQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEE 352 (445)
T ss_pred hhhHHHHhhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688866554444444555421 11 1 23567777777788778776644
No 110
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=48.31 E-value=85 Score=26.51 Aligned_cols=66 Identities=11% Similarity=-0.000 Sum_probs=40.9
Q ss_pred HhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 105 ~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
+++..|.++ +.+...-|.+.+++.+.+.++|+|++.......+. .+. .+...+-+..|+.++|+|-
T Consensus 22 ~l~~~G~~V--~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~-~~~--~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 22 ALRDAGFEV--IDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMT-LMK--EVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred HHHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccccccHH-HHH--HHHHHHHHcCCCCCeEEEE
Confidence 456678776 33444678899999999999999999877433332 121 2444443333313555554
No 111
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=48.28 E-value=70 Score=29.35 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCCeEEEEEEecCCHHHHHHHHH---HhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEV---ASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A---~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
.+....++..||+++..+.--.--.+.+.+|+ ++.+++.||.++-+-+.+.. -|.-..+ +||+-|+
T Consensus 15 ~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpg---------vva~~t~--~PVIgvP 83 (156)
T TIGR01162 15 KKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPG---------MVAALTP--LPVIGVP 83 (156)
T ss_pred HHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHH---------HHHhccC--CCEEEec
Confidence 34444455678988888865444455555555 45678888887765444332 2333445 8999886
Q ss_pred C
Q 012682 177 K 177 (458)
Q Consensus 177 k 177 (458)
-
T Consensus 84 ~ 84 (156)
T TIGR01162 84 V 84 (156)
T ss_pred C
Confidence 3
No 112
>PRK00919 GMP synthase subunit B; Validated
Probab=48.21 E-value=2.5e+02 Score=28.62 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=29.4
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
++|+||+-|.-.|.-++.|+.+.+ |. +++.|||-..
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~l---G~-~v~aV~vD~G 57 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRAI---GD-RLTPVFVDTG 57 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHh---CC-eEEEEEEECC
Confidence 799999999999999998887632 55 4999999654
No 113
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=47.73 E-value=23 Score=36.43 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchh--HHHhhhCCCCceEEEE
Q 012682 98 LLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLS--SRISICVPSFCTVYGV 175 (458)
Q Consensus 98 lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs--~~Vlk~Ap~~C~VlVV 175 (458)
+|.++.....+.|.++.....+ - +.+.+..+.++++.+++|.+|. .+..+++++ +. ..+++-+..+=|=++|
T Consensus 15 fFk~~I~eL~~~GheV~it~R~-~---~~~~~LL~~yg~~y~~iG~~g~-~~~~Kl~~~-~~R~~~l~~~~~~~~pDv~i 88 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLITARD-K---DETEELLDLYGIDYIVIGKHGD-SLYGKLLES-IERQYKLLKLIKKFKPDVAI 88 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEEec-c---chHHHHHHHcCCCeEEEcCCCC-CHHHHHHHH-HHHHHHHHHHHHhhCCCEEE
Confidence 6667666777788887666655 2 3556666789999999999994 444444442 21 2233333333344555
Q ss_pred cCCcccccc
Q 012682 176 EKGKLSSVR 184 (458)
Q Consensus 176 ~kgk~~s~r 184 (458)
..|.....|
T Consensus 89 s~~s~~a~~ 97 (335)
T PF04007_consen 89 SFGSPEAAR 97 (335)
T ss_pred ecCcHHHHH
Confidence 666655555
No 114
>PRK04527 argininosuccinate synthase; Provisional
Probab=47.35 E-value=2.5e+02 Score=29.75 Aligned_cols=36 Identities=11% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
.++|+|+.-|.-.|--++.|+.+ .|. +++.|++...
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e----~G~-~Viavt~d~g 37 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE----RGY-AVHTVFADTG 37 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH----cCC-cEEEEEEEeC
Confidence 36899999999999999999766 255 3888888543
No 115
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=47.10 E-value=1.2e+02 Score=34.86 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=9.5
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 012682 400 EAECARASAEKEAAQRQEAE 419 (458)
Q Consensus 400 aaE~a~~~ae~Ea~kR~~aE 419 (458)
+|..+++..++|-..|+.+|
T Consensus 260 Eak~kkKekekek~er~Kae 279 (1064)
T KOG1144|consen 260 EAKEKKKEKEKEKKERKKAE 279 (1064)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34444445555544444444
No 116
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=46.97 E-value=2.1e+02 Score=29.78 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=25.2
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
.++|+|++.|...|--++.+..+ .|. .++.||+.
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~----~G~-eV~av~~~ 38 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQE----QGY-EIVGVTMR 38 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHH----cCC-cEEEEEec
Confidence 47999999999888877765432 355 38888884
No 117
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=46.79 E-value=73 Score=24.50 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 012682 326 DVNFELEKLRIELRHVRG 343 (458)
Q Consensus 326 ~~eaEm~rLrlELk~t~~ 343 (458)
|+++|+.||..+|.....
T Consensus 1 D~~~E~~rL~Kel~kl~~ 18 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEK 18 (66)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 689999999999987644
No 118
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=46.57 E-value=2.7e+02 Score=26.97 Aligned_cols=93 Identities=18% Similarity=0.140 Sum_probs=57.1
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
+++|..-|.+.|-.|+-+|++. ... +.|+++++.... . . +.-.++
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~~V-~~L~~~~~~~~~-s-~--------~~h~~~-------------------- 46 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----HEV-ISLVGVFSENEE-S-Y--------MFHSPN-------------------- 46 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----Cee-EEEEEEcCCCCC-c-c--------ccccCC--------------------
Confidence 6888999999999999999874 243 667777665310 0 0 000000
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEec--CCHHHHHHHHHHhCCCCEEEEccCCC
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIES--DDVAKAIADEVASCNINKLVIGAQSQ 146 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~--Gdpa~aIve~A~e~~aDlIVmGS~gr 146 (458)
.+++ +..|...|++...+...+ .+-.+.+.+...+.+++-||-|.=-.
T Consensus 47 ~~~~---~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s 96 (222)
T TIGR00289 47 LHLT---DLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIES 96 (222)
T ss_pred HHHH---HHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECcccc
Confidence 0111 223444577765544332 45667777777888999999998753
No 119
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=46.29 E-value=24 Score=25.09 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhh
Q 012682 327 VNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDL 362 (458)
Q Consensus 327 ~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL 362 (458)
+..+++.||.+|-+...-|+---.+.+..+|++..|
T Consensus 2 L~~~Ie~~R~~L~~~~~~~~l~~~~vl~~Sq~LD~l 37 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKKGLTDPEVLELSQELDKL 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999988889999999998765
No 120
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=46.12 E-value=1.1e+02 Score=32.15 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~g 145 (458)
.+-|..+.+.+...|+.. +++. |++.+.|.+++++.+|+.|+.-..-
T Consensus 60 ~esL~~L~~~L~~~g~~L--~v~~-G~~~~vl~~L~~~~~~~~V~~~~~~ 106 (429)
T TIGR02765 60 LESLKDLRTSLRKLGSDL--LVRS-GKPEDVLPELIKELGVRTVFLHQEV 106 (429)
T ss_pred HHHHHHHHHHHHHcCCCe--EEEe-CCHHHHHHHHHHHhCCCEEEEeccC
Confidence 444556666666677765 3334 9999999999999999999887653
No 121
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=46.12 E-value=57 Score=29.69 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhC---CCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASC---NINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~---~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
..+.+..++..|+.++..+.--.--.+.+.+++++. +++.||.++-.-+.+- .-|.-.++ +||+-|
T Consensus 16 ~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp---------gvva~~t~--~PVIgv 84 (150)
T PF00731_consen 16 AEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALP---------GVVASLTT--LPVIGV 84 (150)
T ss_dssp HHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HH---------HHHHHHSS--S-EEEE
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccch---------hhheeccC--CCEEEe
Confidence 344445566678999888865445566677777654 5786666664433332 23333455 999998
Q ss_pred c
Q 012682 176 E 176 (458)
Q Consensus 176 ~ 176 (458)
+
T Consensus 85 P 85 (150)
T PF00731_consen 85 P 85 (150)
T ss_dssp E
T ss_pred e
Confidence 6
No 122
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=45.70 E-value=19 Score=20.42 Aligned_cols=10 Identities=50% Similarity=0.667 Sum_probs=8.0
Q ss_pred HHHHHHHHHH
Q 012682 328 NFELEKLRIE 337 (458)
Q Consensus 328 eaEm~rLrlE 337 (458)
++|++|||-|
T Consensus 2 ~aeLerLkne 11 (17)
T PF12107_consen 2 EAELERLKNE 11 (17)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 5788899876
No 123
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.36 E-value=5.4e+02 Score=29.76 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhh
Q 012682 326 DVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDL 362 (458)
Q Consensus 326 ~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL 362 (458)
.+|.|=||-=||=+|-.+--..++||--.+-+|-.|+
T Consensus 326 qaELerRRq~leeqqqreree~eqkEreE~ekkerer 362 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKEREEEEKKERER 362 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544777777777777777766665554443
No 124
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=45.24 E-value=1.4e+02 Score=29.66 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=49.5
Q ss_pred hhHHHHHHHHH-------HHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLR-------IELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETA 397 (458)
Q Consensus 325 ~~~eaEm~rLr-------lELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA 397 (458)
.++|.-++|.. .++-.....|-.||++.-.|..+.+....--.-=...++..+.+-+.+..-+++=+.+++.+
T Consensus 115 k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~ 194 (258)
T cd07679 115 KEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKS 194 (258)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554 45556778899999999999665543211100001224445556677777777778888877
Q ss_pred HHHHHHHH
Q 012682 398 RREAECAR 405 (458)
Q Consensus 398 ~eaaE~a~ 405 (458)
+++....+
T Consensus 195 l~~L~~~~ 202 (258)
T cd07679 195 LKELDQTT 202 (258)
T ss_pred HHHHHHhh
Confidence 77665443
No 125
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=43.43 E-value=3.2e+02 Score=26.65 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhH---HHHHHHhHHH-----HhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 330 ELEKLRIELRHVRGM---YAIAQNEAND-----ASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREA 401 (458)
Q Consensus 330 Em~rLrlELk~t~~m---Y~~Ac~Ea~~-----Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaa 401 (458)
-+-.||.+|+++..- ...-+.+.+. .......+..+..+...|+...+..-+..+.-.+..|++.....++-
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555444433 3344556666 66677778888888888888888888887777777777665554444
Q ss_pred HHHHH
Q 012682 402 ECARA 406 (458)
Q Consensus 402 E~a~~ 406 (458)
+..+.
T Consensus 101 ~~~~~ 105 (302)
T PF10186_consen 101 EQRRS 105 (302)
T ss_pred HHHHH
Confidence 44333
No 126
>PRK00074 guaA GMP synthase; Reviewed
Probab=43.18 E-value=2.1e+02 Score=31.19 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=27.9
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
++|+||+-|...|.-++..+.+.+ |. +++.|||-.
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~l---g~-~v~av~vd~ 250 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAI---GD-QLTCVFVDH 250 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHh---CC-ceEEEEEeC
Confidence 799999999999988887776533 45 499999954
No 127
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=43.11 E-value=58 Score=31.69 Aligned_cols=43 Identities=7% Similarity=0.281 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 012682 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (458)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~ 144 (458)
..++++..+++..+...+ + |-+-..-+..+.+.|+|.+|+|+.
T Consensus 157 ~~lr~~~~~~~~~~~IeV-D-GGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 157 AELKALRERNGLEYLIEV-D-GSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHHhcCCCeEEEE-E-CCCCHHHHHHHHHcCCCEEEEChH
Confidence 344555555666554443 4 666666676777889999999975
No 128
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.07 E-value=2.1e+02 Score=29.65 Aligned_cols=122 Identities=16% Similarity=0.071 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHH
Q 012682 9 LPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYK 88 (458)
Q Consensus 9 ~~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~ 88 (458)
....|+--.+|+|.|.-.....-+.|.. +...|-. +.|.-. +- ..+.
T Consensus 135 ~~~~p~Vil~vGVNG~GKTTTIaKLA~~-l~~~g~~-VllaA~--------------------DT---------FRAa-- 181 (340)
T COG0552 135 KEKKPFVILFVGVNGVGKTTTIAKLAKY-LKQQGKS-VLLAAG--------------------DT---------FRAA-- 181 (340)
T ss_pred cCCCcEEEEEEecCCCchHhHHHHHHHH-HHHCCCe-EEEEec--------------------ch---------HHHH--
Confidence 3444667778899999888888887754 4445553 433211 10 0111
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHH---HHHHhCCCCEEEEccCCCCCcccccccc-----chhH
Q 012682 89 QEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIA---DEVASCNINKLVIGAQSQGIFTWKFKKN-----NLSS 160 (458)
Q Consensus 89 ~~~~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIv---e~A~e~~aDlIVmGS~grs~~~r~~lGS-----sVs~ 160 (458)
..+.+..+..+.|+++-..- .++||+..+- ++|...++|.|++=+.||-.-..-|+.. .|..
T Consensus 182 ---------AiEQL~~w~er~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~ 251 (340)
T COG0552 182 ---------AIEQLEVWGERLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIK 251 (340)
T ss_pred ---------HHHHHHHHHHHhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhc
Confidence 12233345556788766544 6789998765 5788899999999999985444333321 1333
Q ss_pred HHhhhCCCCceEEEE
Q 012682 161 RISICVPSFCTVYGV 175 (458)
Q Consensus 161 ~Vlk~Ap~~C~VlVV 175 (458)
+....|| --|++|
T Consensus 252 k~~~~ap--~e~llv 264 (340)
T COG0552 252 KDDPDAP--HEILLV 264 (340)
T ss_pred cccCCCC--ceEEEE
Confidence 4444444 346665
No 129
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=42.96 E-value=2.2e+02 Score=25.97 Aligned_cols=57 Identities=28% Similarity=0.412 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc--CCcccccccC
Q 012682 124 AKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE--KGKLSSVRPS 186 (458)
Q Consensus 124 a~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~--kgk~~s~r~a 186 (458)
+.+|.+++++.+.|+|++|.+..++ -+.+ -++.++ ++|..+.|.=+. .|++...|+.
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g~---~la~-rlA~~L--~~~~vsdv~~l~~~~~~~~~~r~~ 138 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGK---QLAP-RVAALL--GVPQISDVTKLEIDGGDLTVTRPI 138 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCccccc---CHHH-HHHHHh--CCCcceeEEEEEEeCCEEEEEEEc
Confidence 5888899999999999999998633 2222 244443 344444454443 4566666654
No 130
>PRK14561 hypothetical protein; Provisional
Probab=42.75 E-value=2.2e+02 Score=26.63 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=23.0
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
+|+|++-|...|--.+.++... . .+.++|+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~-~v~a~t~~ 32 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----Y-DVELVTVN 32 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----C-CeEEEEEe
Confidence 6999999999998888766432 2 26677764
No 131
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=42.53 E-value=2.5e+02 Score=27.29 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHH-------HHHhHHHHHHHhHHHHhHHH
Q 012682 325 VDVNFELEKLRIELR-------HVRGMYAIAQNEANDASRKV 359 (458)
Q Consensus 325 ~~~eaEm~rLrlELk-------~t~~mY~~Ac~Ea~~Ak~k~ 359 (458)
..++.+++++..-+. ....-|..+|+|+=.|.+++
T Consensus 105 K~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~ 146 (239)
T cd07658 105 KPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQV 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666654333 36777899999998888776
No 132
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.51 E-value=2.3e+02 Score=27.95 Aligned_cols=78 Identities=10% Similarity=0.124 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 328 NFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECAR 405 (458)
Q Consensus 328 eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~ 405 (458)
..++.+.-.+|...-.-|..||+|+=.|.++......--.=-...++.++..-+.....+++-|..+...+..+-..|
T Consensus 120 qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q 197 (253)
T cd07676 120 QQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQ 197 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446667777888889999999999999988653322100000112334444445555555555666666666554444
No 133
>COG1422 Predicted membrane protein [Function unknown]
Probab=41.98 E-value=41 Score=32.00 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHh
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDAS 356 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak 356 (458)
-|-| +|+|+|.+.|.+++-+..|.++-..++
T Consensus 69 iD~e-km~~~qk~m~efq~e~~eA~~~~d~~~ 99 (201)
T COG1422 69 IDQE-KMKELQKMMKEFQKEFREAQESGDMKK 99 (201)
T ss_pred ccHH-HHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4556 899999999999888888877655543
No 134
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=41.93 E-value=5.1e+02 Score=28.53 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 012682 325 VDVNFELEKLRIELRHVRG 343 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~ 343 (458)
..-++|-.||+-+|-+|.+
T Consensus 160 ~~~n~e~~~l~~~~~e~~~ 178 (591)
T KOG2412|consen 160 IETNAENIRLVEKLSETRK 178 (591)
T ss_pred HHhhHHHHHhhhhHHHHHH
Confidence 3334666677766666654
No 135
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=41.57 E-value=1.9e+02 Score=26.58 Aligned_cols=35 Identities=34% Similarity=0.358 Sum_probs=23.7
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 366 KLEEETRLSEIQLLEEKAIELAKQEKKKYETARRE 400 (458)
Q Consensus 366 k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~ea 400 (458)
+.|-++.+.|+....|.++.+.|.=+.|.+.|.+.
T Consensus 44 ~~e~~r~v~ea~~~ke~~~Kl~E~iekkieeaR~d 78 (175)
T COG4741 44 KAERERLVNEAQARKEEEWKLKEWIEKKIEEARED 78 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556778888888888888888555555555443
No 136
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=41.48 E-value=87 Score=33.76 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=4.9
Q ss_pred CCHHHHHHHhh
Q 012682 439 LEWEDMELSIR 449 (458)
Q Consensus 439 YtieEIe~AT~ 449 (458)
+.|+|+...|.
T Consensus 418 ~~~~e~~~~~~ 428 (460)
T KOG1363|consen 418 FHPEEYSLNTS 428 (460)
T ss_pred CCchhhccccC
Confidence 34444444444
No 137
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=41.40 E-value=1.8e+02 Score=26.06 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=49.3
Q ss_pred CHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 012682 24 NRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFR 103 (458)
Q Consensus 24 S~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a~~lL~~~~ 103 (458)
++.+..+|..|..++...|. ++++|.+=+.. . . .+.| +
T Consensus 14 ~~~~~e~l~~A~~La~~~g~-~v~av~~G~~~----------------~----------~------------~~~l---~ 51 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGG-EVTAVVLGPAE----------------E----------A------------AEAL---R 51 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTS-EEEEEEEETCC----------------C----------H------------HHHH---H
T ss_pred CHHHHHHHHHHHHHHhhcCC-eEEEEEEecch----------------h----------h------------HHHH---h
Confidence 37899999999998877777 48888764211 0 0 1111 1
Q ss_pred HHhhcCCCeEEEEEEecC--------CHHHHHHHHHHhCCCCEEEEccCCCC
Q 012682 104 NMCAQRRVEVEVKVIESD--------DVAKAIADEVASCNINKLVIGAQSQG 147 (458)
Q Consensus 104 ~~~~~~gV~ve~vvle~G--------dpa~aIve~A~e~~aDlIVmGS~grs 147 (458)
..+...|+.--..+ .+. ..+.+|.+++++.++|+|++|....+
T Consensus 52 ~~l~~~G~d~v~~~-~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g 102 (164)
T PF01012_consen 52 KALAKYGADKVYHI-DDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFG 102 (164)
T ss_dssp HHHHSTTESEEEEE-E-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHH
T ss_pred hhhhhcCCcEEEEe-cCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCC
Confidence 22333565422222 211 25678999999999999999987543
No 138
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=40.63 E-value=1.6e+02 Score=35.00 Aligned_cols=14 Identities=14% Similarity=0.000 Sum_probs=6.7
Q ss_pred CCCCCCCeEEEeec
Q 012682 9 LPNSPALSVAVAVK 22 (458)
Q Consensus 9 ~~~~~~~~ILVAVD 22 (458)
++.+++..|.++.|
T Consensus 21 LG~GgFGtVYLAkd 34 (1021)
T PTZ00266 21 IGNGRFGEVFLVKH 34 (1021)
T ss_pred EecCCCeEEEEEEE
Confidence 34445555544443
No 139
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.53 E-value=4.3e+02 Score=27.28 Aligned_cols=132 Identities=11% Similarity=0.090 Sum_probs=73.4
Q ss_pred CeEEEeecC-----CH---HhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHH
Q 012682 15 LSVAVAVKG-----NR---KSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAA 86 (458)
Q Consensus 15 ~~ILVAVDg-----S~---~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~ 86 (458)
.-++|++|. +. .....+-|-++.++..|+. .+-+||+-.+. .. .
T Consensus 84 ~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAd-AVk~lv~~~~d---------------~~--------~---- 135 (340)
T PRK12858 84 CGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGAD-AVKLLLYYRPD---------------ED--------D---- 135 (340)
T ss_pred CCeEEEecccccccCCCCCCccccccccHHHHHHcCCC-EEEEEEEeCCC---------------cc--------h----
Confidence 337777772 21 2345677878888878875 77778764321 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE--EecC------------C---HHHHHHHHHH-hCCCCEEEEccCCCCC
Q 012682 87 YKQEEKWKTDRLLLPFRNMCAQRRVEVEVKV--IESD------------D---VAKAIADEVA-SCNINKLVIGAQSQGI 148 (458)
Q Consensus 87 ~~~~~~~~a~~lL~~~~~~~~~~gV~ve~vv--le~G------------d---pa~aIve~A~-e~~aDlIVmGS~grs~ 148 (458)
+.+.+....+..+...|.+.|+++-..+ ...| + +..++-.+++ +.|+|+|=+--.+...
T Consensus 136 ---~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~ 212 (340)
T PRK12858 136 ---AINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMK 212 (340)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcc
Confidence 1123335567788888999999864432 2111 1 2222223333 6899999886665321
Q ss_pred ccccc------ccc----chhHHHhhhCCCCceEEEEcCCc
Q 012682 149 FTWKF------KKN----NLSSRISICVPSFCTVYGVEKGK 179 (458)
Q Consensus 149 ~~r~~------lGS----sVs~~Vlk~Ap~~C~VlVV~kgk 179 (458)
+..-+ ... ..-..++..+| .||+|.+.|+
T Consensus 213 ~veg~~~~~~~~~~~~~~~~f~~~~~a~~--~P~vvlsgG~ 251 (340)
T PRK12858 213 FVEGFDGFEEAYTQEEAFKLFREQSDATD--LPFIFLSAGV 251 (340)
T ss_pred cccccccccccccHHHHHHHHHHHHhhCC--CCEEEECCCC
Confidence 11111 000 01234566666 8999988885
No 140
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=40.37 E-value=4e+02 Score=27.44 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=26.2
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
++|+|++.|...|.-++.++.+ .|- .++.+|+...
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~-~V~~v~~~~~ 35 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGY-EVIGVFMKLW 35 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCC-cEEEEEEeCC
Confidence 4899999999999888765543 355 3888888643
No 141
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.35 E-value=3.1e+02 Score=31.61 Aligned_cols=6 Identities=50% Similarity=0.396 Sum_probs=2.9
Q ss_pred HHHHHH
Q 012682 333 KLRIEL 338 (458)
Q Consensus 333 rLrlEL 338 (458)
|=.+||
T Consensus 324 kGqaEL 329 (1118)
T KOG1029|consen 324 KGQAEL 329 (1118)
T ss_pred hhhHHH
Confidence 444555
No 142
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=40.29 E-value=3.5e+02 Score=27.95 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=26.3
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
++|+|++.|...|.-++.++.+ .|. +++.||+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~-~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGY-EVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCC-eEEEEEEE
Confidence 4799999999999988877755 244 48889885
No 143
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.27 E-value=3.8e+02 Score=26.53 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 329 FELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREA 401 (458)
Q Consensus 329 aEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaa 401 (458)
-++...-.+|.....-|..||+|+=.|.+|......-----.-.++.++..-+.....++.=|..+...+..+
T Consensus 120 k~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~ 192 (252)
T cd07675 120 QYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNF 192 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777788889999999999999984432211000000123344444444444444444555555444
No 144
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=39.79 E-value=56 Score=31.65 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 012682 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (458)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~ 144 (458)
..++++..+.+..+...+ + |-+...-+..+.+.|+|.+|+|+.
T Consensus 159 ~~l~~~~~~~~~~~~IeV-D-GGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 159 RAIRKKIDALGKPIRLEI-D-GGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHhcCCCeeEEE-E-CCCCHHHHHHHHHcCCCEEEEChh
Confidence 344444444555543333 4 666666777777889999999964
No 145
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=39.70 E-value=56 Score=31.82 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=28.2
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~ 144 (458)
.++++..++|..+...+ + |-+-..-+..+.+.|+|.+|+|+.
T Consensus 168 ~lr~~~~~~~~~~~IeV-D-GGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 168 QVENRLGNRRVEKLISI-D-GSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHhcCCCceEEE-E-CCCCHHHHHHHHHCCCCEEEEChh
Confidence 34444445566544333 4 667777777788899999999964
No 146
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.31 E-value=3.3e+02 Score=31.92 Aligned_cols=47 Identities=21% Similarity=0.368 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhHHH-------HHHHhHHHHhHHHHhhhhhhhhHhhhhHHH
Q 012682 330 ELEKLRIELRHVRGMYA-------IAQNEANDASRKVNDLNKCKLEEETRLSEI 376 (458)
Q Consensus 330 Em~rLrlELk~t~~mY~-------~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea 376 (458)
|++|.|.+|.|.|+.-+ .-+||...|++-+.+++-|+.+=.+-+-+.
T Consensus 256 ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ 309 (1243)
T KOG0971|consen 256 ELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADT 309 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778887766443 457788888888888888875544444333
No 147
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=39.03 E-value=91 Score=33.78 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=30.0
Q ss_pred CCEEEEccCCCCCcccccccc--chhHHHhhhCCCCceEEEEcCC
Q 012682 136 INKLVIGAQSQGIFTWKFKKN--NLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 136 aDlIVmGS~grs~~~r~~lGS--sVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
+|++||---..+.+.++-.|- +....|+-... |||+|++.=
T Consensus 147 aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~--~PvliaPaM 189 (475)
T PRK13982 147 CDLIVVAPATADLMAKMANGLADDLASAILLAAN--RPILLAPAM 189 (475)
T ss_pred cCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcC--CCEEEEEcC
Confidence 799999988888888777662 34445555555 999999864
No 148
>PRK14974 cell division protein FtsY; Provisional
Probab=38.95 E-value=2.9e+02 Score=28.49 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=41.2
Q ss_pred HHhhcCCCeEEEEEEecCCHHHHH---HHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 104 NMCAQRRVEVEVKVIESDDVAKAI---ADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 104 ~~~~~~gV~ve~vvle~Gdpa~aI---ve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
.++...|+++.... .++||+..+ ++++...++|+|++=+.|+......++.. . ..+.+.....+.+||+.
T Consensus 189 ~~a~~lgv~v~~~~-~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~e-L-~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 189 EHAERLGVKVIKHK-YGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDE-L-KKIVRVTKPDLVIFVGD 261 (336)
T ss_pred HHHHHcCCceeccc-CCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHH-H-HHHHHhhCCceEEEeec
Confidence 34555667654433 346777544 45667788999999999988644444331 2 33433333336667664
No 149
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.66 E-value=80 Score=30.53 Aligned_cols=54 Identities=28% Similarity=0.349 Sum_probs=43.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhh---hhhHhhhhHH
Q 012682 322 ESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKC---KLEEETRLSE 375 (458)
Q Consensus 322 ~~~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~---k~EE~~k~ee 375 (458)
...+.++++..+|+-||+-+..-++.|.+.-..-+++..++++. =.||-.+|++
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34688899999999999999999999999999999999888763 2444444444
No 150
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=38.63 E-value=33 Score=26.42 Aligned_cols=29 Identities=31% Similarity=0.222 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEAN 353 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~ 353 (458)
+.+.-|+++||.||.-.--.=+.||.+.+
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~li 30 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEELL 30 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHHH
Confidence 46778999999999987777777766554
No 151
>PRK10867 signal recognition particle protein; Provisional
Probab=38.56 E-value=4.9e+02 Score=27.84 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=57.5
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHH
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKW 93 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~ 93 (458)
.--++|+.-|+-.+.-+.+.|..+....|.. +.||-. +.. . + .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~k-V~lV~~-D~~---R-~--------------------a----------- 143 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKK-VLLVAA-DVY---R-P--------------------A----------- 143 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCc-EEEEEc-ccc---c-h--------------------H-----------
Confidence 3346778888888899999997655432553 555543 110 0 0 0
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHH---HHHHHHhCCCCEEEEccCCCCCccccc
Q 012682 94 KTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKA---IADEVASCNINKLVIGAQSQGIFTWKF 153 (458)
Q Consensus 94 ~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~a---Ive~A~e~~aDlIVmGS~grs~~~r~~ 153 (458)
....++.++...||++...- ...||... .++++...++|+|++=+.|+......+
T Consensus 144 ----a~eQL~~~a~~~gv~v~~~~-~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~l 201 (433)
T PRK10867 144 ----AIEQLKTLGEQIGVPVFPSG-DGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEEL 201 (433)
T ss_pred ----HHHHHHHHHhhcCCeEEecC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHH
Confidence 01122234455677654432 22466543 345667788999999999988754433
No 152
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.36 E-value=16 Score=37.86 Aligned_cols=19 Identities=5% Similarity=0.267 Sum_probs=16.7
Q ss_pred CCHHHHHHHhhcccchhhc
Q 012682 439 LEWEDMELSIRALFIIRLL 457 (458)
Q Consensus 439 YtieEIe~AT~~f~~~~~~ 457 (458)
||.+||..||++|+.-+++
T Consensus 65 fs~~el~~AT~~Fs~~~~i 83 (361)
T KOG1187|consen 65 FSYDELRKATNNFSESNLI 83 (361)
T ss_pred eeHHHHHHHHhCCchhcce
Confidence 9999999999999986654
No 153
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=38.21 E-value=3.1e+02 Score=32.21 Aligned_cols=20 Identities=45% Similarity=0.501 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhhHHH
Q 012682 408 AEKEAAQRQEAEMKAKHEAK 427 (458)
Q Consensus 408 ae~Ea~kR~~aE~ka~~e~~ 427 (458)
.++|-++|+.-|=++.++..
T Consensus 851 ~~~ee~~r~~eee~~~r~~l 870 (1018)
T KOG2002|consen 851 KELEEARRKEEEEKARREKL 870 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 154
>PRK14057 epimerase; Provisional
Probab=37.96 E-value=69 Score=31.74 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~ 144 (458)
.++++..++|..+...+ + |-+...-+..+.+.|+|.+|+|+.
T Consensus 182 ~lr~~~~~~~~~~~IeV-D-GGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 182 QLLCLLGDKREGKIIVI-D-GSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHhcCCCceEEE-E-CCCCHHHHHHHHHCCCCEEEEChH
Confidence 34444445565543333 4 777777777778899999999964
No 155
>PRK05370 argininosuccinate synthase; Validated
Probab=37.94 E-value=3.3e+02 Score=29.30 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHhCCCCEEEEccCCCCCccccc
Q 012682 122 DVAKAIADEVASCNINKLVIGAQSQGIFTWKF 153 (458)
Q Consensus 122 dpa~aIve~A~e~~aDlIVmGS~grs~~~r~~ 153 (458)
=+++.|+++|++.+++.|.=|+.|+|.=.-+|
T Consensus 109 lia~~lv~~A~~~ga~aIAHG~TGKGNDQvRF 140 (447)
T PRK05370 109 VTGTMLVAAMKEDGVNIWGDGSTYKGNDIERF 140 (447)
T ss_pred HHHHHHHHHHHHhCCcEEEEcCCCCCCchHHH
Confidence 46899999999999999999999988655445
No 156
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=37.70 E-value=3.1e+02 Score=28.19 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=24.9
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
-.++||+.|...|-.++..+...+ |-. +.++|+-.
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~~---gl~-~l~vt~~~ 94 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKKL---GLN-PLLVTVDP 94 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHh---CCc-eEEEEECC
Confidence 469999999999998886664433 343 66678743
No 157
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=37.56 E-value=2.2e+02 Score=29.14 Aligned_cols=93 Identities=22% Similarity=0.217 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHhHH-----HHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 329 FELEKLRIELRHVRGMYAIAQNEANDASRK-----VNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAEC 403 (458)
Q Consensus 329 aEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k-----~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~ 403 (458)
-|+.|||.-+|--|+.-.-|+-..+.-=++ .+++.+...+.-++|-.+--+-=....-+..|.=|...-+.++|.
T Consensus 109 qEv~RLRmlikak~da~qd~~~dh~~llkqfdHLd~qn~~kFe~~DL~~LIq~at~Dl~~yD~~rheeFK~YEM~KehEr 188 (442)
T KOG3866|consen 109 QEVERLRMLIKAKIDADQDAHMDHIKLLKQFDHLDVQNLEKFEKEDLRKLIQKATADLNVYDEQRHEEFKQYEMKKEHER 188 (442)
T ss_pred HHHHHHHHHHHHHhccccccchhHHHHhhhhcccCccchhhhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388899999998887655555444444333 233444444444444433333333334445566677778888888
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 012682 404 ARASAEKEAAQRQEAEMK 421 (458)
Q Consensus 404 a~~~ae~Ea~kR~~aE~k 421 (458)
-..|+.+--.+|+.||.|
T Consensus 189 r~yL~~l~eE~Rkeaesk 206 (442)
T KOG3866|consen 189 RHYLAQLTEEERKEAESK 206 (442)
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 888888877888777754
No 158
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=37.43 E-value=3.4e+02 Score=25.17 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.3
Q ss_pred EEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 17 ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
++|++.|...|--++.++.+ .|. .+..+|+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~----~g~-~v~~~~~~ 31 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKD----EGY-EVHAITFD 31 (201)
T ss_pred CEEEeccHHHHHHHHHHHHH----cCC-cEEEEEEE
Confidence 47899999989888876654 245 38888984
No 159
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=37.10 E-value=1.2e+02 Score=24.06 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012682 372 RLSEIQLLEEKAIELAKQEKKKYETARREAECARASAE 409 (458)
Q Consensus 372 k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~~ae 409 (458)
++.-.+-.+|..+.+...||++. +|.+ |+.-||-|+
T Consensus 30 r~~~l~~~~e~~Rei~a~eKav~-da~~-a~ekKr~a~ 65 (81)
T KOG4326|consen 30 RLRQLREYHEDIREIDAHEKAVA-DAEE-AAEKKRWAK 65 (81)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-hHHH-HHHHHhhHH
Confidence 45555666677777887887763 3333 333344444
No 160
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=37.07 E-value=69 Score=25.48 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEAN 353 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~ 353 (458)
...+..+++.||+|+.-.-.+.+.||+|..
T Consensus 9 ~~q~k~~VeqLk~e~~~~R~~vS~a~~el~ 38 (71)
T KOG4119|consen 9 KPQMKKEVEQLKLEANIERIKVSKAAAELL 38 (71)
T ss_pred hHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Confidence 456777899999999998888888877653
No 161
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=37.03 E-value=4.1e+02 Score=25.94 Aligned_cols=84 Identities=10% Similarity=0.089 Sum_probs=55.3
Q ss_pred hhHHHHHHHHH-------HHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLR-------IELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETA 397 (458)
Q Consensus 325 ~~~eaEm~rLr-------lELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA 397 (458)
..++..|+++. ..|-.+.+-|..+|+|+=.|.+..+-...--. .+.++..+..-+.+..-+++-+..++.+
T Consensus 103 Kk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~--~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~ 180 (240)
T cd07672 103 KKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVN--VKQQEKLFAKLAQSKQNAEDADRLYMQN 180 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777774 24445568899999998888776543211111 1224456667777888888888899988
Q ss_pred HHHHHHHHHhHHH
Q 012682 398 RREAECARASAEK 410 (458)
Q Consensus 398 ~eaaE~a~~~ae~ 410 (458)
++..+..+..-+.
T Consensus 181 v~~l~~~~~~w~~ 193 (240)
T cd07672 181 ISVLDKIREDWQK 193 (240)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777654443
No 162
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=36.64 E-value=7.3e+02 Score=28.75 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=12.3
Q ss_pred HHHHHHHHhhcCCCeEEEEEE
Q 012682 98 LLLPFRNMCAQRRVEVEVKVI 118 (458)
Q Consensus 98 lL~~~~~~~~~~gV~ve~vvl 118 (458)
+|..-.++....|+.|..+..
T Consensus 489 ILkeEQElYekEGLnv~ei~f 509 (1259)
T KOG0163|consen 489 ILKEEQELYEKEGLNVPEIEF 509 (1259)
T ss_pred HHHHHHHHHHhcCCCCCceEe
Confidence 344445566667877755544
No 163
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=36.41 E-value=1.6e+02 Score=30.17 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=32.3
Q ss_pred ccccCCCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 5 DIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 5 ~~~~~~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
+|+......+.+++|+.-|.+.|.-.|..|...+...+.. +-+|||-
T Consensus 28 ~ilrea~~~f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~-~pvl~VD 74 (312)
T PRK12563 28 HILREVVAECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPP-FPLLHVD 74 (312)
T ss_pred HHHHHHHHhcCCcEEEecCChHHHHHHHHHHHhhcccCCC-eeEEEeC
Confidence 3443333335678899999999999998887765433343 8899983
No 164
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.01 E-value=3.6e+02 Score=26.66 Aligned_cols=6 Identities=17% Similarity=0.656 Sum_probs=2.6
Q ss_pred HHHHHH
Q 012682 335 RIELRH 340 (458)
Q Consensus 335 rlELk~ 340 (458)
|||-||
T Consensus 110 Kleakq 115 (299)
T KOG3054|consen 110 KLEAKQ 115 (299)
T ss_pred HHHHHH
Confidence 344444
No 165
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=35.93 E-value=1.8e+02 Score=25.93 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhHHHH
Q 012682 396 TARREAECARASAEKE 411 (458)
Q Consensus 396 aA~eaaE~a~~~ae~E 411 (458)
....-+..+|||||||
T Consensus 124 ~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 124 YEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3444566777888876
No 166
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=35.78 E-value=44 Score=25.89 Aligned_cols=32 Identities=28% Similarity=0.226 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHH
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDA 355 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~A 355 (458)
.+.+.-|+..||.||+..--.=+.||++.+.=
T Consensus 4 ~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y 35 (68)
T PF00631_consen 4 KDQLKREIEQLRQELERERIKVSKACKELIEY 35 (68)
T ss_dssp HHHHHHHHHHHHHHHTS----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccceeHHHHHHHHHHH
Confidence 45677789999999988666778888877653
No 167
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.60 E-value=4.3e+02 Score=25.81 Aligned_cols=57 Identities=19% Similarity=0.099 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEE 381 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee 381 (458)
.|++.+-++.+-...+..+=+....+|.-.+|+.-..+.+....-++++++|....+
T Consensus 106 ~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~ 162 (241)
T cd07656 106 EDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEE 162 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666777777777777777888888888888877776666666666655544
No 168
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=35.59 E-value=5.4e+02 Score=27.53 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=58.0
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
-.+|+.-|+-.+.-+.+.|..+ ...|.. +.||-. ++ +-|
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l-~~~G~k-V~lV~~-D~------------------~R~-------------------- 141 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYY-QRKGFK-PCLVCA-DT------------------FRA-------------------- 141 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHCCCC-EEEEcC-cc------------------cch--------------------
Confidence 4577888888888888888754 344553 655532 11 000
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHH---HHHHHHHhCCCCEEEEccCCCCCccccccc
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAK---AIADEVASCNINKLVIGAQSQGIFTWKFKK 155 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~---aIve~A~e~~aDlIVmGS~grs~~~r~~lG 155 (458)
.....++.++.+.++++.... ...||.. .-++.+...++|+|++=+.|+......++.
T Consensus 142 -aA~eQLk~~a~~~~vp~~~~~-~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~ 202 (429)
T TIGR01425 142 -GAFDQLKQNATKARIPFYGSY-TESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFE 202 (429)
T ss_pred -hHHHHHHHHhhccCCeEEeec-CCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHH
Confidence 011122334555677765433 2357654 345566667899999999999876554443
No 169
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=34.83 E-value=5.6e+02 Score=26.85 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 9 LPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 9 ~~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
+|-+...+++|++.|.-.|--|+.|+.. .|. .++.||+..
T Consensus 171 lP~g~~gkvvvllSGGiDS~vaa~l~~k----~G~-~v~av~~~~ 210 (394)
T PRK01565 171 LPVGTSGKALLLLSGGIDSPVAGYLAMK----RGV-EIEAVHFHS 210 (394)
T ss_pred CccCCCCCEEEEECCChhHHHHHHHHHH----CCC-EEEEEEEeC
Confidence 4555788999999999999999877755 366 489999854
No 170
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=34.65 E-value=50 Score=24.86 Aligned_cols=29 Identities=31% Similarity=0.216 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEAN 353 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~ 353 (458)
+.+..++++||.||.-.--.=+.||.+.+
T Consensus 2 ~~~~~~veqLr~el~~~RikvS~a~~~l~ 30 (57)
T cd00068 2 DQLKKEVEQLRKELSRERLKVSKAAAELL 30 (57)
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHHHH
Confidence 45677899999999876655555555443
No 171
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=34.37 E-value=97 Score=30.05 Aligned_cols=41 Identities=17% Similarity=0.342 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEcc
Q 012682 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGA 143 (458)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS 143 (458)
..++++..+++ ++...+ +|-+-..-+..+.+.|+|.+|+||
T Consensus 158 ~~lr~~~~~~~-~~~IeV--DGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 158 RELRAMIDERL-DILIEV--DGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred HHHHHHhcccC-CeEEEE--eCCcCHHHHHHHHHcCCCEEEEEE
Confidence 34444554444 433333 477888888888889999999999
No 172
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=34.27 E-value=2e+02 Score=26.45 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=42.0
Q ss_pred HHHhhcCCCeEEEEEEecCCHHHHHHHHH---HhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 103 RNMCAQRRVEVEVKVIESDDVAKAIADEV---ASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 103 ~~~~~~~gV~ve~vvle~Gdpa~aIve~A---~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
.+.+.+.||+.+..|+.-.-..+.+.+|+ ++.+++.||-|+-|--.+- |- | .-..+ .||+-|+
T Consensus 22 a~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLP----Gm-v----Aa~T~--lPViGVP 87 (162)
T COG0041 22 AEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLP----GM-V----AAKTP--LPVIGVP 87 (162)
T ss_pred HHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcc----hh-h----hhcCC--CCeEecc
Confidence 33445568999988886566666666665 6778889999987744333 42 3 23345 7898886
No 173
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=34.16 E-value=3.7e+02 Score=28.24 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=27.1
Q ss_pred EEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 17 VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 17 ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
|+|++.|.-.|.-++.|+.+.. +. +++.+|+-..
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~---~~-eV~av~~d~G 34 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG---GY-EVIAVTADVG 34 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC---CC-eEEEEEEECC
Confidence 6899999999999999997643 33 4899998644
No 174
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=34.04 E-value=4.1e+02 Score=28.69 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=31.8
Q ss_pred CCCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 9 LPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 9 ~~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
+|.+...++||.+-|...|--|+-|+.. +|. .++.||+..
T Consensus 172 lP~g~~gk~lvllSGGiDS~va~~~~~k----rG~-~v~~l~f~~ 211 (482)
T PRK01269 172 FPLGTQEDVLSLISGGFDSGVASYMLMR----RGS-RVHYCFFNL 211 (482)
T ss_pred CCccccCeEEEEEcCCchHHHHHHHHHH----cCC-EEEEEEEec
Confidence 4455688999999999999999877755 366 499999963
No 175
>PRK08349 hypothetical protein; Validated
Probab=33.84 E-value=3.9e+02 Score=24.80 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=26.6
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
.++||++-|...|--++-++.. .|. +++.||+-.
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~-~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGV-EVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCC-eEEEEEEeC
Confidence 3689999999999998866543 456 499999963
No 176
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.55 E-value=7e+02 Score=27.62 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHhhhHH
Q 012682 407 SAEKEAAQRQEAEMKAKHEA 426 (458)
Q Consensus 407 ~ae~Ea~kR~~aE~ka~~e~ 426 (458)
.||.|+++++..-+....++
T Consensus 434 ~AEAea~r~lAEa~~~~~~a 453 (548)
T COG2268 434 KAEAEAKRALAEAIQVLGDA 453 (548)
T ss_pred hhhHHHHHHHHHHHHHhhhH
Confidence 56666666554444444444
No 177
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=33.02 E-value=1.1e+02 Score=32.17 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC--CCHHHH
Q 012682 380 EEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMKAKHEAKEKEMLERALNG--LEWEDM 444 (458)
Q Consensus 380 ee~a~~~ae~EK~k~~aA~eaaE~a~~~ae~Ea~kR~~aE~ka~~e~~ek~k~~~~l~~--YtieEI 444 (458)
-+.|+..-++||.+|+.=++.++.||...+ +.....+..+.--.+.|.+++|.+.+ |.++-|
T Consensus 198 ~~~a~~~l~~E~~~~~~di~~~~~A~~~l~---~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i 261 (379)
T PF04518_consen 198 YFMALAKLEKEREQIRRDIKSCERAKAVLN---KQLARVKADAKLTSEQKSELLDSLNNYKDNLNAI 261 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999999999999888887443 12222333344446677888888877 444443
No 178
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=32.48 E-value=2.3e+02 Score=23.49 Aligned_cols=38 Identities=8% Similarity=0.180 Sum_probs=27.3
Q ss_pred HhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 012682 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (458)
Q Consensus 105 ~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~ 144 (458)
++++.|.++. ++......+.+++++.+.+.|+|.+...
T Consensus 23 ~l~~~G~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 23 YLRKAGHEVD--ILDANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHTTBEEE--EEESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHCCCeEE--EECCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 4455677554 3443445699999999999999999874
No 179
>PLN02316 synthase/transferase
Probab=32.27 E-value=1.1e+02 Score=36.26 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=5.5
Q ss_pred HHHhHHHHHHHH
Q 012682 404 ARASAEKEAAQR 415 (458)
Q Consensus 404 a~~~ae~Ea~kR 415 (458)
||.-||.|..+|
T Consensus 290 a~akae~~~~~~ 301 (1036)
T PLN02316 290 AQAKAEVEKRRE 301 (1036)
T ss_pred hhhhHHHHHHHH
Confidence 344455554444
No 180
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=32.27 E-value=63 Score=28.78 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCEEEEccCC-----CCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 123 VAKAIADEVASCNINKLVIGAQS-----QGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 123 pa~aIve~A~e~~aDlIVmGS~g-----rs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
....|.+++++++++.||||-.- .+....... ..+..+.+.-+ +||+.+..
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~--~f~~~L~~~~~--~~v~~~DE 97 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERAR--KFANRLEGRFG--LPVVLVDE 97 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHH--HHHHHHHHHhC--CCEEEEcC
Confidence 37889999999999999999332 122111111 24445544434 88888854
No 181
>PHA03155 hypothetical protein; Provisional
Probab=32.07 E-value=1.3e+02 Score=26.03 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=18.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHh
Q 012682 321 SESQVDVNFELEKLRIELRHVRG 343 (458)
Q Consensus 321 s~~~~~~eaEm~rLrlELk~t~~ 343 (458)
..+.+++.+|+-||++|-|+...
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKk 29 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKK 29 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999887643
No 182
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.02 E-value=5.4e+02 Score=25.90 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=10.4
Q ss_pred HHHHHhHHHHHHHhHHHHhHH
Q 012682 338 LRHVRGMYAIAQNEANDASRK 358 (458)
Q Consensus 338 Lk~t~~mY~~Ac~Ea~~Ak~k 358 (458)
|+|.-+-.+.---|+..-||-
T Consensus 290 lrqeeeelnikk~e~~kikqe 310 (445)
T KOG2891|consen 290 LRQEEEELNIKKAEACKIKQE 310 (445)
T ss_pred HhhhHhhhhhhHHHhhchhhh
Confidence 555555444444444444444
No 183
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=31.86 E-value=6.3e+02 Score=26.95 Aligned_cols=97 Identities=11% Similarity=0.088 Sum_probs=56.9
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
|.-.++|+.-|+-.+.-+.+.|..+....|.. +.||-. +.. . | .
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~k-V~lV~~-D~~----------------R--~------~---------- 142 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKK-VLLVAC-DLY----------------R--P------A---------- 142 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCe-EEEEec-ccc----------------c--h------H----------
Confidence 34456778888888999999997754334553 555533 110 0 0 0
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHH---HHHHHHHhCCCCEEEEccCCCCCccc
Q 012682 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAK---AIADEVASCNINKLVIGAQSQGIFTW 151 (458)
Q Consensus 93 ~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~---aIve~A~e~~aDlIVmGS~grs~~~r 151 (458)
....+..++...|+++.... ...+|.+ ..++++...++|+||+-+.|+.....
T Consensus 143 -----a~~QL~~~a~~~gvp~~~~~-~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~ 198 (428)
T TIGR00959 143 -----AIEQLKVLGQQVGVPVFALG-KGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDE 198 (428)
T ss_pred -----HHHHHHHHHHhcCCceEecC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCH
Confidence 01122233445566654432 2245643 34556677889999999999876543
No 184
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=31.73 E-value=5.2e+02 Score=25.61 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhh
Q 012682 330 ELEKLRIELRHVRGMYAIAQNEANDASRKVNDLN 363 (458)
Q Consensus 330 Em~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~ 363 (458)
|+=|.--||..+|..|..-.-|++.|..|+.+-.
T Consensus 127 eLlkV~~EL~t~mKTY~~y~~e~~~ae~KL~eaE 160 (253)
T cd07684 127 ELLKVTNELYTVMKTYHMYHAESISAESKLKEAE 160 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 6778889999999999999999999998886653
No 185
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=1.4e+02 Score=30.27 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRK 358 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k 358 (458)
.++=+-=||=|+||+--..--+.+|....-.++|
T Consensus 15 e~iLaRHr~E~keLq~ki~~mKk~a~k~~k~~rK 48 (302)
T KOG2606|consen 15 EEILARHRRERKELQAKITSMKKAAPKGNKKKRK 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 3444445666788877777777788877755555
No 186
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=31.70 E-value=4.6e+02 Score=28.56 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=43.7
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC--CCccccccccchhHHHhhhCCCCceEEEEcCCcccccc
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ--GIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVR 184 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr--s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kgk~~s~r 184 (458)
...||+|..+++. . +.|+- ..++.|.+|+|.. +|+.---.|. -.-.++.++.+ .||+|++...-.+=|
T Consensus 407 v~~GinctYv~I~---a----~syim-~evtkvfLGahailsNG~vysR~GT-a~valvAna~n-VPVlVCCE~yKF~eR 476 (556)
T KOG1467|consen 407 VDRGINCTYVLIN---A----ASYIM-LEVTKVFLGAHAILSNGAVYSRVGT-ACVALVANAFN-VPVLVCCEAYKFHER 476 (556)
T ss_pred HHcCCCeEEEEeh---h----HHHHH-HhcceeeechhhhhcCcchhhhcch-HHHHHHhcccC-CCEEEEechhhhhhh
Confidence 3479999999875 2 33444 4589999999973 3332122363 34455566653 999999986555444
No 187
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.47 E-value=1e+03 Score=28.93 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHhHH
Q 012682 329 FELEKLRIELRHVRGMYAIAQNEANDASRK 358 (458)
Q Consensus 329 aEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k 358 (458)
.+.+.+-..|++....|+.++++.-.+.+.
T Consensus 621 ~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~ 650 (1201)
T PF12128_consen 621 ERQEELEKQLKQINKKIEELKREITQAEQE 650 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666555444
No 188
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=31.34 E-value=1.4e+02 Score=29.82 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=38.7
Q ss_pred cCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC---CCCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 108 QRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS---QGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 108 ~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~g---rs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
..||++..++ + .. +.|+-+ .+|++.||+-| .||+..+ +|. ..-.|+.++- .-||||+...
T Consensus 179 ~~~IPvtlvl-D--Sa----VgyvMe-~vD~VlVGAEGVvEsGGIIN~-iGT-yq~~v~Ak~~-~kPfYV~AES 241 (313)
T KOG1466|consen 179 KLGIPVTLVL-D--SA----VGYVME-RVDLVLVGAEGVVESGGIINK-IGT-YQVAVCAKSM-NKPFYVVAES 241 (313)
T ss_pred hcCCCeEEEe-h--hh----HHHHHh-hccEEEEccceeeecCceeee-ccc-chhhhhHHhc-CCCeEEEeec
Confidence 4678876655 2 22 233332 48999999998 4677655 475 5555554443 2899999874
No 189
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=31.26 E-value=1.8e+02 Score=25.42 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhHHHH-H------HHhHHHHhHHHHhhhhhh
Q 012682 323 SQVDVNFELEKLRIELRHVRGMYAI-A------QNEANDASRKVNDLNKCK 366 (458)
Q Consensus 323 ~~~~~eaEm~rLrlELk~t~~mY~~-A------c~Ea~~Ak~k~~eL~~~k 366 (458)
+++++.+||-||++|-|+....-.. . -.+-|+..||=.-+..|.
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~ 54 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAV 54 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHH
Confidence 4689999999999998776443322 2 245566666655555554
No 190
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=31.24 E-value=1.4e+02 Score=30.26 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=35.3
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHH-hhhCCCCceEEEEcCC
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRI-SICVPSFCTVYGVEKG 178 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~V-lk~Ap~~C~VlVV~kg 178 (458)
.+.||++..+. + . ..-.+. . .+|++++|+.+- |++..+ .|+ -.-.+ .++.. .||||+..-
T Consensus 163 ~~~gI~vtlI~-D-s-a~~~~m---~--~vd~VivGad~v~~nG~v~nk-iGT-~~lA~~Ak~~~--vPv~V~a~~ 226 (301)
T TIGR00511 163 RDYGIPVTLIV-D-S-AVRYFM---K--EVDHVVVGADAITANGALINK-IGT-SQLALAAREAR--VPFMVAAET 226 (301)
T ss_pred HHCCCCEEEEe-h-h-HHHHHH---H--hCCEEEECccEEecCCCEEEH-HhH-HHHHHHHHHhC--CCEEEEccc
Confidence 45688876543 2 3 222232 2 399999999973 334433 365 33333 34443 999999764
No 191
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=31.16 E-value=5e+02 Score=25.25 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=54.8
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT 95 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a 95 (458)
++++=+.|.+.|-+|+-||+.. |..-..|+++.|.... . + | .+.| +-+
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~----G~eV~~Ll~~~p~~~d---S-~------m-~H~~----n~~------------- 49 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE----GHEVVYLLTVKPENGD---S-Y------M-FHTP----NLE------------- 49 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc----CCeeEEEEEEecCCCC---e-e------e-eecc----chH-------------
Confidence 4677788999999999999763 3323678888776430 0 0 1 1111 000
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecC---CHHHHHHHHHHhCCCCEEEEccCC
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESD---DVAKAIADEVASCNINKLVIGAQS 145 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~G---dpa~aIve~A~e~~aDlIVmGS~g 145 (458)
+..+ .+...|++....... | +=.+.+.+.....++|-||.|+--
T Consensus 50 ---~~~~--~Ae~~gi~l~~~~~~-g~~e~eve~L~~~l~~l~~d~iv~GaI~ 96 (223)
T COG2102 50 ---LAEL--QAEAMGIPLVTFDTS-GEEEREVEELKEALRRLKVDGIVAGAIA 96 (223)
T ss_pred ---HHHH--HHHhcCCceEEEecC-ccchhhHHHHHHHHHhCcccEEEEchhh
Confidence 1111 122246665444432 4 466777788888889999999764
No 192
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.08 E-value=3.6e+02 Score=23.55 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=27.0
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHH
Q 012682 319 SSSESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKV 359 (458)
Q Consensus 319 ~~s~~~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~ 359 (458)
++.+-...+.+.+|+|--|+.+..+-+...+.+==.+.+.+
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677888888888888888777766655444443333
No 193
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.02 E-value=5.9e+02 Score=29.42 Aligned_cols=17 Identities=18% Similarity=-0.035 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHhCCCCE
Q 012682 122 DVAKAIADEVASCNINK 138 (458)
Q Consensus 122 dpa~aIve~A~e~~aDl 138 (458)
|..-+...++...++..
T Consensus 271 D~l~a~a~~a~~~~~~~ 287 (771)
T TIGR01069 271 DSLQARARYAKAVKGEF 287 (771)
T ss_pred HHHHHHHHHHHHCCCee
Confidence 34444445555544433
No 194
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=31.01 E-value=7.3e+02 Score=27.42 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 012682 324 QVDVNFELEKLRIELRHV 341 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t 341 (458)
+..+-.+...+|+|-++-
T Consensus 166 ~~~l~~~~~e~~~~~~~r 183 (591)
T KOG2412|consen 166 NIRLVEKLSETRKEVKRR 183 (591)
T ss_pred HHHhhhhHHHHHHHHHHH
Confidence 344444666666666655
No 195
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=30.93 E-value=1.4e+02 Score=31.90 Aligned_cols=60 Identities=18% Similarity=0.083 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 012682 84 AAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (458)
Q Consensus 84 ~~~~~~~~~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~ 144 (458)
....++..-....+++..|.+.+.+.|..|...- ...+..+.|++++.+.++..||.|.+
T Consensus 38 ~~~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~a~-t~~eA~~~v~~i~~~~~~~~vv~~kS 97 (432)
T TIGR00273 38 VKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAK-TAEEARKIIGKVAQEKNGKKVVKSKS 97 (432)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 4455566666778889999888888887654432 22567777889999999999999843
No 196
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=30.91 E-value=85 Score=30.97 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=31.2
Q ss_pred cCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC---CCCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 108 QRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS---QGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 108 ~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~g---rs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
+.|++|..+. + . ++-.+..+ .+|++|+|+.. -|++... .|+..-.-+.++-. .||||+..-
T Consensus 156 ~~gi~v~~i~-d-~----~~~~~m~~-~vd~VliGad~v~~nG~v~nk-~Gt~~~a~~Ak~~~--vPv~v~~~~ 219 (282)
T PF01008_consen 156 EAGIPVTLIP-D-S----AVGYVMPR-DVDKVLIGADAVLANGGVVNK-VGTLQLALAAKEFN--VPVYVLAES 219 (282)
T ss_dssp HTT-EEEEE--G-G----GHHHHHHC-TESEEEEE-SEEETTS-EEEE-TTHHHHHHHHHHTT---EEEEE--G
T ss_pred hcceeEEEEe-c-h----HHHHHHHH-hCCeeEEeeeEEecCCCEeeh-hhHHHHHHHHHhhC--CCEEEEccc
Confidence 4688765544 2 2 23333444 79999999996 3445444 37522233444433 999999764
No 197
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.70 E-value=5.1e+02 Score=25.16 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHH-------HHHHhHHHHHHHhHHHHhHH
Q 012682 325 VDVNFELEKLRIEL-------RHVRGMYAIAQNEANDASRK 358 (458)
Q Consensus 325 ~~~eaEm~rLrlEL-------k~t~~mY~~Ac~Ea~~Ak~k 358 (458)
..++..|+++..-+ ....+.|..+|+|+=.|-+.
T Consensus 103 k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~ 143 (233)
T cd07649 103 KKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQ 143 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777776555 66678899999997665443
No 198
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=30.63 E-value=3.9e+02 Score=23.75 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=39.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 323 SQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYET 396 (458)
Q Consensus 323 ~~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~a 396 (458)
..++++..+++|+-++.+....+.......-.+++++..+. +.++.++...-.++.++.....|-+|-+.
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~----~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAE----EKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777788888888888877777777666555555554332 22333444444444444444444444433
No 199
>PHA03162 hypothetical protein; Provisional
Probab=30.53 E-value=2.1e+02 Score=25.53 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHhH
Q 012682 322 ESQVDVNFELEKLRIELRHVRGM 344 (458)
Q Consensus 322 ~~~~~~eaEm~rLrlELk~t~~m 344 (458)
..++++.+|+.||++|-|+....
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkk 35 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKK 35 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999998876443
No 200
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=30.21 E-value=4.9e+02 Score=24.85 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhh
Q 012682 328 NFELEKLRIELRHVRGMYAIAQNEANDASRKVNDL 362 (458)
Q Consensus 328 eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL 362 (458)
++||..|+..++....=-..|+.-+-+|++|+.++
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Ea 37 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEA 37 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665555544444444444444455554444
No 201
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=30.15 E-value=4.1e+02 Score=27.84 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 012682 328 NFELEKLRIELRHVRGMYA 346 (458)
Q Consensus 328 eaEm~rLrlELk~t~~mY~ 346 (458)
|+++-.|-..|.|||||.-
T Consensus 185 e~di~~lErrL~qtmdmii 203 (462)
T KOG2417|consen 185 ETDIIQLERRLAQTMDMII 203 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999974
No 202
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=30.11 E-value=4.1e+02 Score=23.92 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 012682 330 ELEKLRIELRHVRGMYAIAQN 350 (458)
Q Consensus 330 Em~rLrlELk~t~~mY~~Ac~ 350 (458)
+.+++|.|..+...-|...-.
T Consensus 50 ~A~~~~~ea~~~~~e~e~~l~ 70 (164)
T PRK14471 50 SAEEARKEMQNLQADNERLLK 70 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666665433
No 203
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=29.48 E-value=1.1e+02 Score=23.95 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=25.2
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCC
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGI 43 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~ 43 (458)
.++|+++.|.++..+.|.+-..+.+...|-
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~ 72 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGL 72 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCC
Confidence 589999999999999999888887766543
No 204
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=29.45 E-value=1.3e+02 Score=26.54 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHhCCCCEEEEc-----cCCCCCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 121 DDVAKAIADEVASCNINKLVIG-----AQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 121 Gdpa~aIve~A~e~~aDlIVmG-----S~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
......|.+++++++++.|||| ....+....... ..+..+.+.-+ .||+.|...
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~--~f~~~L~~~~~--~~v~~~DEr 92 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQ--KFANRLEGRFG--VPVVLWDER 92 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHH--HHHHHHHHHhC--CCEEEEcCC
Confidence 3457889999999999999999 322222222211 24445544434 788888553
No 205
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.41 E-value=2.9e+02 Score=27.78 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhh
Q 012682 410 KEAAQRQEAEMKAKH 424 (458)
Q Consensus 410 ~Ea~kR~~aE~ka~~ 424 (458)
.|+.+|..+++.+-+
T Consensus 156 ~eaRqRV~~~Ie~DK 170 (290)
T KOG2689|consen 156 EEARQRVLRQIERDK 170 (290)
T ss_pred HHHHHHHHHHHHHhH
Confidence 345555555554444
No 206
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=29.17 E-value=96 Score=29.30 Aligned_cols=61 Identities=25% Similarity=0.242 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc--CCcccccccC
Q 012682 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE--KGKLSSVRPS 186 (458)
Q Consensus 123 pa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~--kgk~~s~r~a 186 (458)
.+.+|.+++++.+.|+|++|+...+...|-+.+- ++.++ .++....|.-+. .|++...|+.
T Consensus 96 ~a~al~~~i~~~~p~lVL~~~t~~~~~grdlapr-lAarL--ga~lvsdv~~l~~~~~~~~~~r~~ 158 (202)
T cd01714 96 TAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPL-LAELL--GWPQITYVSKIEIEGGKVTVEREL 158 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHH-HHHHh--CCCccceEEEEEEeCCEEEEEEEc
Confidence 3667888888889999999998865544444442 54443 445445555443 5566556653
No 207
>PRK13337 putative lipid kinase; Reviewed
Probab=29.16 E-value=2.2e+02 Score=28.37 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=36.1
Q ss_pred HHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 103 RNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 103 ~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
...+.+.|+++.....+...-+..++..+.+.+.|.||+.. |-|.+.. |...++.. +..+|+-|+|-|
T Consensus 25 ~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~G-GDGTl~~------vv~gl~~~-~~~~~lgiiP~G 92 (304)
T PRK13337 25 LQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAG-GDGTLNE------VVNGIAEK-ENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEc-CCCHHHH------HHHHHhhC-CCCCcEEEECCc
Confidence 34455677776665554344444455445456677655432 3344433 33333322 223688899977
No 208
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.01 E-value=4.5e+02 Score=26.96 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEAN 353 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~ 353 (458)
.+.+.++..|+.+|.+...-.....+|+-
T Consensus 11 ~et~~~V~~m~~~L~~~~~~L~~k~~e~e 39 (344)
T PF12777_consen 11 KETEEQVEEMQEELEEKQPELEEKQKEAE 39 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888777776666666553
No 209
>PTZ00323 NAD+ synthase; Provisional
Probab=28.83 E-value=6.2e+02 Score=25.56 Aligned_cols=42 Identities=10% Similarity=-0.010 Sum_probs=26.5
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
+.++++||+.|.-.|--++..|...+.....+...++.+..|
T Consensus 45 g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P 86 (294)
T PTZ00323 45 GLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQP 86 (294)
T ss_pred CCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECC
Confidence 478999999999888777777766543322221334444433
No 210
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=28.73 E-value=6.6e+02 Score=25.82 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=24.8
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
+|+|++-|...|.-++.++.+ .|. .++.||+..
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~-~v~~v~i~~ 33 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGY-EVIGVFMKN 33 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCC-cEEEEEEec
Confidence 589999999988888766544 345 388888764
No 211
>PRK11914 diacylglycerol kinase; Reviewed
Probab=28.60 E-value=2.6e+02 Score=27.89 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=37.2
Q ss_pred HHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 104 NMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 104 ~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
..+.+.|+++..+......-+..+++.+...++|+||+.. |-|.+... ...+. ..+ +|+-|||-|
T Consensus 33 ~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~G-GDGTi~ev------v~~l~-~~~--~~lgiiP~G 97 (306)
T PRK11914 33 ARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVG-GDGVISNA------LQVLA-GTD--IPLGIIPAG 97 (306)
T ss_pred HHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEEC-CchHHHHH------hHHhc-cCC--CcEEEEeCC
Confidence 3445567776655544334466677666677889665432 33444432 23333 223 788999876
No 212
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=28.51 E-value=4.3e+02 Score=30.55 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=10.6
Q ss_pred CCHH-HHHHHhhccc
Q 012682 439 LEWE-DMELSIRALF 452 (458)
Q Consensus 439 Ytie-EIe~AT~~f~ 452 (458)
+.-+ ||-+|.+.|.
T Consensus 729 ~kqe~EiaaAA~KLA 743 (769)
T PF05911_consen 729 IKQEKEIAAAAEKLA 743 (769)
T ss_pred cchHHHHHHHHHHHH
Confidence 5556 8999988775
No 213
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=28.50 E-value=1.1e+02 Score=29.48 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhh
Q 012682 327 VNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLN 363 (458)
Q Consensus 327 ~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~ 363 (458)
...|+||=+-+++|..++.+.||+|=-.|+.+.+.|-
T Consensus 24 A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 24 ANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999887765
No 214
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=28.31 E-value=2.4e+02 Score=29.83 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=30.3
Q ss_pred CCCEEEEccCCCCCccccccc--cchhHHHhhhCCCCceEEEEc
Q 012682 135 NINKLVIGAQSQGIFTWKFKK--NNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 135 ~aDlIVmGS~grs~~~r~~lG--SsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
.+|++||---..+.+.++-.| .+..+.++..+. |||+|++
T Consensus 82 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~--~pvvi~P 123 (399)
T PRK05579 82 WADLVLIAPATADLIAKLAHGIADDLLTTTLLATT--APVLVAP 123 (399)
T ss_pred ccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcC--CCEEEEe
Confidence 489999998888888877766 234455566665 9999998
No 215
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=28.23 E-value=2e+02 Score=20.19 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 012682 386 LAKQEKKKY 394 (458)
Q Consensus 386 ~ae~EK~k~ 394 (458)
.+|-||.+.
T Consensus 13 ~aEaeKqra 21 (42)
T PF07046_consen 13 VAEAEKQRA 21 (42)
T ss_pred HHHHHHHHH
Confidence 444455443
No 216
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.19 E-value=1.2e+03 Score=28.65 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=27.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhh
Q 012682 322 ESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDL 362 (458)
Q Consensus 322 ~~~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL 362 (458)
.+.++++.|+..++.+|..+..-+...+.+.=..++++..|
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888888888888555555555555555555555
No 217
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.17 E-value=6.5e+02 Score=29.65 Aligned_cols=93 Identities=22% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHH-------HHHHHHHhHHHHHHHhHHHHhHH--------HHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHH
Q 012682 328 NFELEKLR-------IELRHVRGMYAIAQNEANDASRK--------VNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKK 392 (458)
Q Consensus 328 eaEm~rLr-------lELk~t~~mY~~Ac~Ea~~Ak~k--------~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~ 392 (458)
..++.+|| .|||++++--..----+ +++-| ..||+.--++|- +++.+.-+|+.-.=-++=++
T Consensus 1077 ~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~-~~~~kdK~e~er~~rE~n~s~i~~~--V~e~krL~~~~~k~~e~L~k 1153 (1189)
T KOG1265|consen 1077 TNQTKALKESLEKETKELKKKLDKKRMEDIKV-DKVIKDKAERERRKRELNSSNIKEF--VEERKRLAEKQSKRQEQLVK 1153 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 012682 393 KYETARREAECARASAEKEAAQRQEAEMKAK 423 (458)
Q Consensus 393 k~~aA~eaaE~a~~~ae~Ea~kR~~aE~ka~ 423 (458)
++.+..+....-.+-.+.|+..+.+++|+.+
T Consensus 1154 ~~~~~leql~e~~kal~~e~~~~~e~~~~~~ 1184 (1189)
T KOG1265|consen 1154 KHLEVLEQLAEEEKALDAEAEQEYEEQMARL 1184 (1189)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
No 218
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=28.16 E-value=5e+02 Score=25.26 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 327 VNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARA 406 (458)
Q Consensus 327 ~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~ 406 (458)
.+.+.++..-+..+..+.+...++|.-.+|++-..+.+.-..-..|++++-.......+.+|+-|.|+..+...+..++.
T Consensus 103 ~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akN 182 (237)
T cd07657 103 KRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHN 182 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455555555555555555555444433322222333333222222222334444444444444444443
No 219
>TIGR01765 tspaseT_teng_N transposase, putative, N-terminal domain. This model represents the N-terminal region of a family of putative transposases found in the largest copy number in Thermoanaerobacter tengcongensis. The three homologs in Bacillus anthracis are each split into two ORFs and This model represents the upstream ORF.
Probab=27.94 E-value=63 Score=25.31 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHHhHHHH
Q 012682 335 RIELRHVRGMYAIAQNEANDA 355 (458)
Q Consensus 335 rlELk~t~~mY~~Ac~Ea~~A 355 (458)
+..|..||..|+.||+-+..-
T Consensus 13 ~~~L~~tm~~f~~A~n~~~~~ 33 (73)
T TIGR01765 13 KEYLLDLIRAFSSAVNFVIKR 33 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999998654
No 220
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=27.71 E-value=1.5e+02 Score=26.67 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=28.8
Q ss_pred HHHHHhCCCCEEEEccCCCCCccccccccchh---HHHhhhCCCCceEEEEcCC
Q 012682 128 ADEVASCNINKLVIGAQSQGIFTWKFKKNNLS---SRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 128 ve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs---~~Vlk~Ap~~C~VlVV~kg 178 (458)
..+.+++++|.||+=.|-..| .|-|+-++ +.++.-.+ .|+|-+|+.-
T Consensus 54 ~kl~~dy~Vd~VvIk~R~~KG---KfAGga~~FKmEaaIQL~~-~~~V~lvs~~ 103 (138)
T PF11215_consen 54 AKLMEDYKVDKVVIKERATKG---KFAGGAVGFKMEAAIQLID-DVEVELVSPA 103 (138)
T ss_pred HHHHHHcCCCEEEEEecccCC---CccCCchhHHHHHHHHhcC-CCcEEEECHH
Confidence 345556677777777665433 55565444 34455554 4999999764
No 221
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.43 E-value=8.9e+02 Score=26.90 Aligned_cols=8 Identities=38% Similarity=0.430 Sum_probs=5.5
Q ss_pred CCHHHHHH
Q 012682 439 LEWEDMEL 446 (458)
Q Consensus 439 YtieEIe~ 446 (458)
||.+|++.
T Consensus 329 iS~~dve~ 336 (581)
T KOG0995|consen 329 ISGEDVER 336 (581)
T ss_pred CCHHHHHH
Confidence 77777764
No 222
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=27.32 E-value=8.8e+02 Score=26.84 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhHHH
Q 012682 330 ELEKLRIELRHVRGMYA 346 (458)
Q Consensus 330 Em~rLrlELk~t~~mY~ 346 (458)
|+..||-+|+.+.+.-.
T Consensus 284 e~e~LkeqLr~~qe~lq 300 (546)
T PF07888_consen 284 ENEALKEQLRSAQEQLQ 300 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 223
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=27.10 E-value=5.8e+02 Score=24.68 Aligned_cols=137 Identities=13% Similarity=0.196 Sum_probs=74.2
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCC--CCC-CCCcccCC----CCCCCcccccccc-hHHHHHH
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRIT--SVP-TPTSLAIG----HPVGNFIPIEQVR-DDVAAAY 87 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~--~~~-~p~~~~~~----~~~g~~vp~~~~~-~~~~~~~ 87 (458)
++++..-|.+.|..|+-+|+.. . .. +.|+++++... +.. ++. +..- ..+| +|.-.+. ....+.+
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~---~v-~~L~t~~~~~~~s~~~H~~~-~~~~~~qA~alg--ipl~~~~~~~~~e~~ 73 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-H---EV-ISLVNIMPENEESYMFHGVN-AHLTDLQAESIG--IPLIKLYTEGTEEDE 73 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-C---ee-EEEEEEecCCCCcccccccC-HHHHHHHHHHcC--CCeEEeecCCCccHH
Confidence 5778899999999999999886 2 33 77888887642 110 000 0000 0011 1211000 0001112
Q ss_pred HHHHHHHHHH---------------HHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccc
Q 012682 88 KQEEKWKTDR---------------LLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWK 152 (458)
Q Consensus 88 ~~~~~~~a~~---------------lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~ 152 (458)
.+.+.+..++ ........|.+.|+++-.=+ . +.....+++..-+.+++.||++....+ +...
T Consensus 74 ~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~PL-W-~~~~~~ll~e~i~~G~~aiIv~v~a~g-L~~~ 150 (223)
T TIGR00290 74 VEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGLKSFAPL-W-HRDPEKLMEEFVEEKFEARIIAVAAEG-LDES 150 (223)
T ss_pred HHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCCEEeccc-c-CCCHHHHHHHHHHcCCeEEEEEEecCC-CChH
Confidence 2222221111 12334566888888776655 3 444455666666889999998887653 5566
Q ss_pred ccccchhHHHh
Q 012682 153 FKKNNLSSRIS 163 (458)
Q Consensus 153 ~lGSsVs~~Vl 163 (458)
++|..+....+
T Consensus 151 ~LGr~i~~e~i 161 (223)
T TIGR00290 151 WLGRRIDRKMI 161 (223)
T ss_pred HcCCcccHHHH
Confidence 77865554444
No 224
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.85 E-value=6e+02 Score=25.31 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHH
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVN 360 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~ 360 (458)
-..++.|+-.-=-||+.++..|..+|.++=.+++|+.
T Consensus 119 ~~~lq~El~~~~~EL~KaKK~Y~~~cq~~e~~ReK~~ 155 (260)
T cd07677 119 LTKIQAELQETVKDLAKGKKKYFETEQMAHAVREKAD 155 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3677888888889999999999999999998888873
No 225
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=26.66 E-value=3.6e+02 Score=22.07 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHH
Q 012682 423 KHEAKEKEMLERA 435 (458)
Q Consensus 423 ~~e~~ek~k~~~~ 435 (458)
-+|-+|+.|+|++
T Consensus 71 EkElEERrKALe~ 83 (86)
T PF15437_consen 71 EKELEERRKALEM 83 (86)
T ss_pred HHHHHHHHHhhhc
Confidence 3455777777753
No 226
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=26.61 E-value=4.6e+02 Score=23.29 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=26.0
Q ss_pred HhhhhhhhhHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 012682 360 NDLNKCKLEEETRLSEIQ----LLEEKAIELAKQEKKKYETARR 399 (458)
Q Consensus 360 ~eL~~~k~EE~~k~eea~----~~ee~a~~~ae~EK~k~~aA~e 399 (458)
.+|+++..+..+-+.|+. ..-..+.+-.++||.+..+.+.
T Consensus 34 ~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~ 77 (131)
T PF11068_consen 34 QELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKN 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666 5666666677777777655544
No 227
>PRK13054 lipid kinase; Reviewed
Probab=26.60 E-value=3.3e+02 Score=27.11 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=37.1
Q ss_pred HhhcCCCeEEEEEEec-CCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhC-CCCceEEEEcCC
Q 012682 105 MCAQRRVEVEVKVIES-DDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICV-PSFCTVYGVEKG 178 (458)
Q Consensus 105 ~~~~~gV~ve~vvle~-Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~A-p~~C~VlVV~kg 178 (458)
.+.+.|++++...... |+ +..+++.+...++|.||+.. |-|.+.. |...++... ...||+-|||-|
T Consensus 26 ~l~~~g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vvv~G-GDGTl~e------vv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 26 LLREEGHTLHVRVTWEKGD-AARYVEEALALGVATVIAGG-GDGTINE------VATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHcCCEEEEEEecCCCc-HHHHHHHHHHcCCCEEEEEC-CccHHHH------HHHHHHhhccCCCCcEEEEeCC
Confidence 3455677765544433 55 55666655566788766443 4444443 334444321 113899999977
No 228
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.58 E-value=6.8e+02 Score=27.72 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHH------HHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 329 FELEKLRIELRHVRGMYAIAQNEAN------DASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAE 402 (458)
Q Consensus 329 aEm~rLrlELk~t~~mY~~Ac~Ea~------~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE 402 (458)
.+.++++-.+++...+++.+-+++= .-||++++|...+..--..+..+...-+....-.+..|++.+.+-.+.+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888777663 3355566665543332222223332333333334455555555555555
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhH
Q 012682 403 CARASAEKEAAQRQEAEMKAKHE 425 (458)
Q Consensus 403 ~a~~~ae~Ea~kR~~aE~ka~~e 425 (458)
.++. .-+..-+++|+...
T Consensus 244 ~~~~-----~~~~~~~~lk~ap~ 261 (555)
T TIGR03545 244 NDKK-----QLKADLAELKKAPQ 261 (555)
T ss_pred HhHH-----HHHHHHHHHHhccH
Confidence 4443 33334445555443
No 229
>PRK08576 hypothetical protein; Provisional
Probab=26.55 E-value=5.4e+02 Score=27.61 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=25.5
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
.+|+|++.|.+.|..++..+.+.. + . +.+||+-
T Consensus 235 ~rVvVafSGGKDStvLL~La~k~~---~-~-V~aV~iD 267 (438)
T PRK08576 235 WTVIVPWSGGKDSTAALLLAKKAF---G-D-VTAVYVD 267 (438)
T ss_pred CCEEEEEcChHHHHHHHHHHHHhC---C-C-CEEEEeC
Confidence 389999999999999987776643 2 2 6777773
No 230
>PRK13055 putative lipid kinase; Reviewed
Probab=26.51 E-value=2.6e+02 Score=28.43 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCCeEEEEEEe-cCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 99 LLPFRNMCAQRRVEVEVKVIE-SDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle-~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+..+...+...|+.++..... .+.-+..++..+...++|.||+.. |-|.+.. |...+... ....|+-|||-
T Consensus 22 ~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~G-GDGTl~e------vvngl~~~-~~~~~LgiiP~ 93 (334)
T PRK13055 22 VADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAG-GDGTINE------VVNGIAPL-EKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEEC-CCCHHHH------HHHHHhhc-CCCCcEEEECC
Confidence 334445556677776655443 223445556555566788766542 3344433 22333322 22357778886
Q ss_pred C
Q 012682 178 G 178 (458)
Q Consensus 178 g 178 (458)
|
T Consensus 94 G 94 (334)
T PRK13055 94 G 94 (334)
T ss_pred C
Confidence 6
No 231
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=26.46 E-value=5.7e+02 Score=24.32 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhh
Q 012682 330 ELEKLRIELRHVRGMYAIAQNEANDASRKVNDL 362 (458)
Q Consensus 330 Em~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL 362 (458)
+-+++|.|......-|... .-.|+++++++
T Consensus 95 ~Ae~~k~eAe~~~~~ye~~---L~~Ar~eA~~I 124 (204)
T PRK09174 95 QAARLKQEADAAVAAYEQE---LAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5555555555555544432 33344555444
No 232
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=26.45 E-value=8.1e+02 Score=26.24 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=13.9
Q ss_pred CccchhhHHHHHHHHHHHHHHH
Q 012682 320 SSESQVDVNFELEKLRIELRHV 341 (458)
Q Consensus 320 ~s~~~~~~eaEm~rLrlELk~t 341 (458)
.+..-.....|.|+.+.|=+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~ 300 (429)
T PRK00247 279 LTDEFKEHHAEQRAQYREKQKE 300 (429)
T ss_pred CCcchHHHHHHHHHHHHHHHHH
Confidence 3444455566888777776665
No 233
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=26.28 E-value=2e+02 Score=28.49 Aligned_cols=61 Identities=13% Similarity=0.265 Sum_probs=34.7
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
...||+|.. +.+ ..++ . +. ..+|.+++|+++- |++..+ .|+ -.-.++-+.. ..||||+...
T Consensus 131 ~~~GI~vtl-i~D-sa~~-~---~m--~~vd~VlvGAd~V~~nG~v~nk-vGT-~~~Al~A~~~-~vPv~V~~~s 194 (253)
T PRK06372 131 VKSGIDVVL-LTD-ASMC-E---AV--LNVDAVIVGSDSVLYDGGLIHK-NGT-FPLALCARYL-KKPFYSLTIS 194 (253)
T ss_pred HHCCCCEEE-Eeh-hHHH-H---HH--HhCCEEEECccEEecCCCEeeh-hhH-HHHHHHHHHc-CCCEEEEeec
Confidence 346898843 322 2222 2 22 2499999999973 334433 375 3344443333 3999998764
No 234
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.26 E-value=8.6e+02 Score=26.34 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 012682 408 AEKEAAQRQEAEMKAKHEA 426 (458)
Q Consensus 408 ae~Ea~kR~~aE~ka~~e~ 426 (458)
.++|+|+|++.|+.-..|.
T Consensus 166 ~e~e~qr~~n~ElvrmQEe 184 (630)
T KOG0742|consen 166 DELEAQRRLNEELVRMQEE 184 (630)
T ss_pred HHHHHHHHHhHHHHHHhHH
Confidence 5788888888887665553
No 235
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.03 E-value=3.1e+02 Score=24.30 Aligned_cols=41 Identities=7% Similarity=0.081 Sum_probs=31.0
Q ss_pred HhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCC
Q 012682 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQG 147 (458)
Q Consensus 105 ~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs 147 (458)
+++..|.++ +.+-..-|.+.|++.|.+.++|.|.|.+....
T Consensus 26 ~lr~~G~eV--i~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~ 66 (137)
T PRK02261 26 ALTEAGFEV--INLGVMTSQEEFIDAAIETDADAILVSSLYGH 66 (137)
T ss_pred HHHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEcCcccc
Confidence 455678754 33433578999999999999999999876543
No 236
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=25.94 E-value=33 Score=32.65 Aligned_cols=43 Identities=12% Similarity=0.363 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEcc
Q 012682 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGA 143 (458)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS 143 (458)
+..++++..+.|..+...+ + |-+-..-+..+.+.|+|.+|+|+
T Consensus 153 I~~l~~~~~~~~~~~~I~v-D-GGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 153 IRELRKLIPENGLDFEIEV-D-GGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHTCGSEEEE-E-SSESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHhcCCceEEEE-E-CCCCHHHHHHHHHcCCCEEEECH
Confidence 3444555555555554444 4 77777777777788999999996
No 237
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=25.93 E-value=4.6e+02 Score=26.28 Aligned_cols=75 Identities=9% Similarity=-0.024 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCCeEEEEEEecC-------------CHHHHHHHHHHhCCCCEEEE--ccCCCCCccccccccchhHHHh
Q 012682 99 LLPFRNMCAQRRVEVEVKVIESD-------------DVAKAIADEVASCNINKLVI--GAQSQGIFTWKFKKNNLSSRIS 163 (458)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~G-------------dpa~aIve~A~e~~aDlIVm--GS~grs~~~r~~lGSsVs~~Vl 163 (458)
-..+.++|...|+.++..+.+-| .-.+...+++++.++|.|-+ |+--...-..--+|-+.=..|.
T Consensus 117 t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~ 196 (281)
T PRK06806 117 TKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEIN 196 (281)
T ss_pred HHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHH
Confidence 34556778888887765443222 12233466777789999999 7653221111223434445666
Q ss_pred hhCCCCceEEEE
Q 012682 164 ICVPSFCTVYGV 175 (458)
Q Consensus 164 k~Ap~~C~VlVV 175 (458)
+..+ +||+.+
T Consensus 197 ~~~~--iPlV~h 206 (281)
T PRK06806 197 DVVH--IPLVLH 206 (281)
T ss_pred HhcC--CCEEEE
Confidence 6655 776555
No 238
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=25.86 E-value=5.1e+02 Score=27.64 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRIELRH 340 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~ 340 (458)
+-+.+|++|||.-|.-
T Consensus 256 ~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSR 271 (552)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5557888888877754
No 239
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=25.79 E-value=2.2e+02 Score=28.51 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=35.2
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
.+.||++..+. + ..++ .+ ..+ +|++|||+.+- |++..+. |+ -.-.++-+.. ..||||+...
T Consensus 157 ~~~GI~vtlI~-D-sa~~-~~---m~~--vd~VivGAD~I~~nG~v~NKi-GT-~~lA~~Ak~~-~vPfyV~a~~ 220 (275)
T PRK08335 157 EFLGIEFEVIT-D-AQLG-LF---AKE--ATLALVGADNVTRDGYVVNKA-GT-YLLALACHDN-GVPFYVAAET 220 (275)
T ss_pred HHCCCCEEEEe-c-cHHH-HH---HHh--CCEEEECccEEecCCCEeehh-hH-HHHHHHHHHc-CCCEEEECcc
Confidence 34688876544 2 3332 22 222 99999999963 3344443 64 3334443333 3999999654
No 240
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=25.73 E-value=9e+02 Score=26.41 Aligned_cols=32 Identities=38% Similarity=0.335 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHh
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDAS 356 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak 356 (458)
+-+.-|+++||.||.-+.+.=+.|-+.|-.|.
T Consensus 133 ~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~ 164 (522)
T PF05701_consen 133 DSVKQELEKLRQELASALDAKNAALKQAEEAV 164 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666555555555555554444
No 241
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=25.53 E-value=1.8e+02 Score=29.23 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 012682 98 LLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (458)
Q Consensus 98 lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~g 145 (458)
.|....+...+.||++..+.+....-.+.|.++.+++..|.||+-.|.
T Consensus 116 YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 116 YLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 344444444556899988888778999999999999999999997664
No 242
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=25.49 E-value=8.6e+02 Score=26.08 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=8.8
Q ss_pred HHHHHHHHhCCCCEE
Q 012682 125 KAIADEVASCNINKL 139 (458)
Q Consensus 125 ~aIve~A~e~~aDlI 139 (458)
...-+.=+++|+..+
T Consensus 89 qe~~~LyKe~ginP~ 103 (429)
T PRK00247 89 QKQKDLNKEYGYNPL 103 (429)
T ss_pred HHHHHHHHHcCCCch
Confidence 345555667766654
No 243
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=25.25 E-value=4.1e+02 Score=22.85 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCeEEEEEEecC--------CHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhH--HHhhhCCCCc
Q 012682 101 PFRNMCAQRRVEVEVKVIESD--------DVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSS--RISICVPSFC 170 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~G--------dpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~--~Vlk~Ap~~C 170 (458)
.+..+|..+|..+..+..+.| .--..+++.+....+|.||+-...| |.|-... +.. ..+.... +
T Consensus 23 ~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~R--l~R~~~~--~~~~~~~l~~~g--i 96 (148)
T smart00857 23 ALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDR--LGRSLRD--LLALLELLEKKG--V 96 (148)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccch--hhCcHHH--HHHHHHHHHHCC--C
Confidence 345567778887765554433 3467888999999999999988765 3332211 111 2334444 7
Q ss_pred eEEEEcCC
Q 012682 171 TVYGVEKG 178 (458)
Q Consensus 171 ~VlVV~kg 178 (458)
.|+++..|
T Consensus 97 ~l~~~~~~ 104 (148)
T smart00857 97 RLVSVTEG 104 (148)
T ss_pred EEEECcCC
Confidence 88877654
No 244
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=25.10 E-value=7e+02 Score=29.87 Aligned_cols=7 Identities=29% Similarity=0.221 Sum_probs=3.2
Q ss_pred CCHHHHH
Q 012682 439 LEWEDME 445 (458)
Q Consensus 439 YtieEIe 445 (458)
|.|.+++
T Consensus 528 ~~~~~~~ 534 (1021)
T PTZ00266 528 YFLKGME 534 (1021)
T ss_pred hhhhhcc
Confidence 4444444
No 245
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=25.04 E-value=3.3e+02 Score=22.75 Aligned_cols=52 Identities=12% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEe-----------cCCHHHHHHHHHHhCCCCEEEEccCCCCC
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIE-----------SDDVAKAIADEVASCNINKLVIGAQSQGI 148 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle-----------~Gdpa~aIve~A~e~~aDlIVmGS~grs~ 148 (458)
++.|..++.+|...|+.+...++. +.--.+.|.+.+...++|+||+-.. .++
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~-Lsp 69 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNE-LSP 69 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCC-CCH
Confidence 455667777787778877654432 1223678889999999999999753 444
No 246
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=24.84 E-value=6e+02 Score=24.04 Aligned_cols=47 Identities=26% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHH
Q 012682 374 SEIQLLEEKAIELAKQEKKKYETAR-REAECARASAEKEAAQRQEAEM 420 (458)
Q Consensus 374 eea~~~ee~a~~~ae~EK~k~~aA~-eaaE~a~~~ae~Ea~kR~~aE~ 420 (458)
+++.--.+.|.+-+++++++.++.. ++.+-.++.++.|++..++..+
T Consensus 17 eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~ii 64 (194)
T COG1390 17 EEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRII 64 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666554433 4455666777777766655443
No 247
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.58 E-value=8.5e+02 Score=28.18 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHhCCCCEEEEc
Q 012682 122 DVAKAIADEVASCNINKLVIG 142 (458)
Q Consensus 122 dpa~aIve~A~e~~aDlIVmG 142 (458)
|..-+...++...++-.-.+.
T Consensus 276 D~l~a~a~~a~~~~~~~P~~~ 296 (782)
T PRK00409 276 DFIFARARYAKALKATFPLFN 296 (782)
T ss_pred HHHHHHHHHHHHCCCccceEc
Confidence 555666666766665544443
No 248
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.57 E-value=2.9e+02 Score=23.59 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=30.7
Q ss_pred HhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC
Q 012682 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ 146 (458)
Q Consensus 105 ~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr 146 (458)
+++..|.++.. +-...|.+.+++.+.+.++|.|+|.....
T Consensus 22 ~l~~~G~~vi~--lG~~vp~e~~~~~a~~~~~d~V~iS~~~~ 61 (122)
T cd02071 22 ALRDAGFEVIY--TGLRQTPEEIVEAAIQEDVDVIGLSSLSG 61 (122)
T ss_pred HHHHCCCEEEE--CCCCCCHHHHHHHHHHcCCCEEEEcccch
Confidence 45667876533 33357899999999999999999987753
No 249
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.54 E-value=2e+02 Score=28.91 Aligned_cols=53 Identities=9% Similarity=0.214 Sum_probs=29.7
Q ss_pred CeEEEEEEecCCHHHHHHHHHHhC-------CCCEEEEccCCCCCcccccc-cc-chhHHHhh
Q 012682 111 VEVEVKVIESDDVAKAIADEVASC-------NINKLVIGAQSQGIFTWKFK-KN-NLSSRISI 164 (458)
Q Consensus 111 V~ve~vvle~Gdpa~aIve~A~e~-------~aDlIVmGS~grs~~~r~~l-GS-sVs~~Vlk 164 (458)
+.+-...+.|.+.+..|++..+.. ++|.||||.-| |.+..++- .. .|+..|..
T Consensus 44 ~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG-Gs~eDL~~FN~e~varai~~ 105 (319)
T PF02601_consen 44 IILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG-GSIEDLWAFNDEEVARAIAA 105 (319)
T ss_pred EEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC-CChHHhcccChHHHHHHHHh
Confidence 333344455556677777544333 49999999866 44444332 21 25555543
No 250
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=24.53 E-value=6.7e+02 Score=24.51 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=31.4
Q ss_pred hhHHHHHHH-HHHHHHHHHhHHHHHHHhHHHHhHHHHhh
Q 012682 325 VDVNFELEK-LRIELRHVRGMYAIAQNEANDASRKVNDL 362 (458)
Q Consensus 325 ~~~eaEm~r-LrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL 362 (458)
..++.|+.+ ---+|+.+..-|..+|+++-.|++|+.+.
T Consensus 115 ~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~~a 153 (234)
T cd07686 115 QQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYKDA 153 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 567777766 44778888899999999999999998775
No 251
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.23 E-value=1.9e+02 Score=29.75 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccc-chhHHHhhhCCCCceEEEEc
Q 012682 98 LLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKN-NLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 98 lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGS-sVs~~Vlk~Ap~~C~VlVV~ 176 (458)
+|......++.+|++|.....+.|++. +...-.|++..++|.||...+..+++-+ --...+.+-++.+=|.+.+.
T Consensus 15 fFk~lI~elekkG~ev~iT~rd~~~v~----~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i~ 90 (346)
T COG1817 15 FFKNLIWELEKKGHEVLITCRDFGVVT----ELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAIG 90 (346)
T ss_pred HHHHHHHHHHhCCeEEEEEEeecCcHH----HHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEee
Confidence 455555556678998877777755543 4455689999999999988888555421 12344556677778888888
Q ss_pred CCccc
Q 012682 177 KGKLS 181 (458)
Q Consensus 177 kgk~~ 181 (458)
++..-
T Consensus 91 ~~s~~ 95 (346)
T COG1817 91 KHSPE 95 (346)
T ss_pred cCCcc
Confidence 66443
No 252
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=24.07 E-value=2.9e+02 Score=26.19 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=15.0
Q ss_pred hHHHHhHHHHhhhhhhhhHhhhh
Q 012682 351 EANDASRKVNDLNKCKLEEETRL 373 (458)
Q Consensus 351 Ea~~Ak~k~~eL~~~k~EE~~k~ 373 (458)
+.+.+.|-++++.+.|+.|+..-
T Consensus 76 d~v~~rqEa~eaAR~RmQEE~da 98 (190)
T PF06936_consen 76 DVVVRRQEAMEAARRRMQEELDA 98 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777776443
No 253
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=24.01 E-value=1.9e+02 Score=29.24 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=38.4
Q ss_pred HHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC
Q 012682 98 LLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS 145 (458)
Q Consensus 98 lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~g 145 (458)
.|........+.||++..+.+...+-.+.|.++..++..|.||+-.|.
T Consensus 117 YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 117 YLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 444444445567899998888778999999999999999999997663
No 254
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.93 E-value=1.2e+03 Score=27.07 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 012682 325 VDVNFELEKLRIELRHVRG 343 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~ 343 (458)
+++=.++.+.|.+|.+-..
T Consensus 519 ~~li~~l~~~~~~~e~~~~ 537 (782)
T PRK00409 519 NELIASLEELERELEQKAE 537 (782)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333345555555555444
No 255
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.80 E-value=1.7e+02 Score=30.52 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=37.2
Q ss_pred hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 106 ~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+.+.||++..+. + ..+- -+..+..+|++|||+.+- |++..+ .|+ -.-.++-+.. ..||||+..
T Consensus 223 L~~~GIpvtlI~-D--sa~~---~~m~~~~Vd~VivGAD~I~~NG~v~NK-iGT-y~lA~~Ak~~-~vPfyV~ap 288 (363)
T PRK05772 223 LMEEGIKVTLIT-D--TAVG---LVMYKDMVNNVMVGADRILRDGHVFNK-IGT-FKEAVIAHEL-GIPFYALAP 288 (363)
T ss_pred HHHCCCCEEEEe-h--hHHH---HHHhhcCCCEEEECccEEecCCCEeeh-hhh-HHHHHHHHHh-CCCEEEEcc
Confidence 345688876543 2 2222 223346799999999973 334333 374 4445554444 299999974
No 256
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=23.73 E-value=2.1e+02 Score=29.02 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=34.9
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHh-hhCCCCceEEEEcCC
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRIS-ICVPSFCTVYGVEKG 178 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vl-k~Ap~~C~VlVV~kg 178 (458)
.+.||+|..+. + ..++- +. . .+|.++||+++- |++..+ .|+ -.-.++ |+-. .||||+..-
T Consensus 168 ~~~GI~vtlI~-D-sav~~-~m---~--~vd~VivGAd~v~~nG~v~nk-iGT-~~~A~~Ak~~~--vPv~V~a~~ 231 (310)
T PRK08535 168 AEYGIPVTLIV-D-SAVRY-FM---K--DVDKVVVGADAITANGAVINK-IGT-SQIALAAHEAR--VPFMVAAET 231 (310)
T ss_pred HHCCCCEEEEe-h-hHHHH-HH---H--hCCEEEECccEEecCCCEEeH-HhH-HHHHHHHHHhC--CCEEEeccc
Confidence 45688876544 2 33332 22 2 299999999973 334433 364 333333 4433 899999763
No 257
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=23.73 E-value=5.4e+02 Score=25.55 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=47.1
Q ss_pred hhHHHHHHHHH-------HHHHHHHhHHHHHHHhHHHHhHHHHh--hhhh-hhhHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLR-------IELRHVRGMYAIAQNEANDASRKVND--LNKC-KLEEETRLSEIQLLEEKAIELAKQEKKKY 394 (458)
Q Consensus 325 ~~~eaEm~rLr-------lELk~t~~mY~~Ac~Ea~~Ak~k~~e--L~~~-k~EE~~k~eea~~~ee~a~~~ae~EK~k~ 394 (458)
.+++.-++|+. .++-.....|..+|++.-.|+.+-.. ...- .-++ +...+.+-+.+..-+++-+.++
T Consensus 115 K~~e~~f~kaqK~w~k~~kk~~~sKk~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q---~~K~~~kleK~~~~~~k~~~~Y 191 (258)
T cd07681 115 KEAEEGFRKAQKPWVKKLKEVESSKKGYHAARKDERTAQTRETHAKADSTVSQEQ---LRKLQDRVEKCTQEAEKAKEQY 191 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666654 23334557899999888887642211 1111 1223 3344556677777788888888
Q ss_pred HHHHHHHHHHH
Q 012682 395 ETARREAECAR 405 (458)
Q Consensus 395 ~aA~eaaE~a~ 405 (458)
+.++++.+..+
T Consensus 192 ~~~v~~L~~~~ 202 (258)
T cd07681 192 EKALEELNRYN 202 (258)
T ss_pred HHHHHHHHHhh
Confidence 88888765543
No 258
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.67 E-value=7.4e+02 Score=24.70 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhh
Q 012682 330 ELEKLRIELRHVRGMYAIAQNEANDASRKVNDL 362 (458)
Q Consensus 330 Em~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL 362 (458)
|+=|.--||..+|..|-.-..|++.|..|..+-
T Consensus 127 eLlkV~~ELqt~mktYh~y~~e~~~ae~Klk~a 159 (263)
T cd07682 127 DLMKVLNELYTVMKTYHMYNADSISAQSKLKEA 159 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999887663
No 259
>KOG4325 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.50 E-value=2.8e+02 Score=25.64 Aligned_cols=53 Identities=25% Similarity=0.231 Sum_probs=38.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHH
Q 012682 322 ESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKA 383 (458)
Q Consensus 322 ~~~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a 383 (458)
....|++--++-||..|++| |++.-+-.+.+|+..-.|.=.||.+-|.-||+.
T Consensus 155 aa~edkaKkIkaLKKKiR~t---------EalQQkiaagdln~~qkEkfeKLaerRa~eeaL 207 (212)
T KOG4325|consen 155 AAGEDKAKKIKALKKKIRLT---------EALQQKIAAGDLNPEQKEKFEKLAERRAEEEAL 207 (212)
T ss_pred cchhhHHHHHHHHHHHHHHH---------HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence 34578888999999999998 455555556778887777777777766655544
No 260
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.45 E-value=8.1e+02 Score=25.04 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHHHHHHH-----------hHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHH-HHHHHH---HHHHH
Q 012682 324 QVDVNFELEKLRIELRHVR-----------GMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQ-LLEEKA---IELAK 388 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~-----------~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~-~~ee~a---~~~ae 388 (458)
...+|-|-.+||.|-.+.. .+-.--+++...|++++..|+.. =++|.++.. ..||.+ -.++.
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseE---La~k~Ee~~rQQEEIt~Llsqivd 245 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEE---LARKTEENRRQQEEITSLLSQIVD 245 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999997765543 11222367888889998888652 233444433 333332 23444
Q ss_pred HHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhhH
Q 012682 389 QEKKKYETARREAECARA-SAEKEAAQRQEAEMKAKHE 425 (458)
Q Consensus 389 ~EK~k~~aA~eaaE~a~~-~ae~Ea~kR~~aE~ka~~e 425 (458)
.++.-..=+.|..|..+. -+.+++|.+..+|++-+++
T Consensus 246 lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqd 283 (306)
T PF04849_consen 246 LQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQD 283 (306)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445566666666 4567999999999766654
No 261
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.34 E-value=1.3e+03 Score=27.58 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAEC 403 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~ 403 (458)
+.+.-|++.++-+++.+...|.....+--+-- ..+..|+-+.++|++++.---+.+.+-++..+..++......+.
T Consensus 744 ~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~ 819 (1174)
T KOG0933|consen 744 KELLEEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYER 819 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777777888888777766443332222 33566888889999998888888887777777777666555443
No 262
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=23.19 E-value=8.8e+02 Score=25.43 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=30.4
Q ss_pred CCCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 9 LPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 9 ~~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
+|.+...+|+|++-|...|--|+-...+ +|. .+..||+..
T Consensus 175 LPvGs~gkvlvllSGGiDSpVAa~ll~k----rG~-~V~~v~f~~ 214 (381)
T PRK08384 175 LPIGTQGKVVALLSGGIDSPVAAFLMMK----RGV-EVIPVHIYM 214 (381)
T ss_pred CccCCCCcEEEEEeCChHHHHHHHHHHH----cCC-eEEEEEEEe
Confidence 4555789999999999988877654433 577 499999953
No 263
>PRK09039 hypothetical protein; Validated
Probab=23.15 E-value=8.4e+02 Score=25.12 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhh
Q 012682 326 DVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKC 365 (458)
Q Consensus 326 ~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~ 365 (458)
+++..+..|.-+|..+...|+.+..+-...++++..|...
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666555444
No 264
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=23.12 E-value=1.8e+02 Score=30.01 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=36.4
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
.+.||+|..+. +..+-. +..+..+|++++|+.+- |++..+ .|+ -.-.++-+.. ..||||+..
T Consensus 203 ~~~GI~vtlI~---Dsav~~---~m~~~~vd~VivGAd~v~~nG~v~nk-iGT-~~lA~~Ak~~-~vPfyV~a~ 267 (331)
T TIGR00512 203 VQEGIPATLIT---DSMAAH---LMKHGEVDAVIVGADRIAANGDTANK-IGT-YQLAVLAKHH-GVPFYVAAP 267 (331)
T ss_pred HHCCCCEEEEc---ccHHHH---HhcccCCCEEEEcccEEecCCCEeeh-hhH-HHHHHHHHHh-CCCEEEecc
Confidence 35688876443 222222 23345799999999973 334433 375 4444443333 299999965
No 265
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=23.10 E-value=6.7e+02 Score=24.02 Aligned_cols=17 Identities=0% Similarity=0.079 Sum_probs=6.9
Q ss_pred HHHHHHhHHHHhHHHHh
Q 012682 345 YAIAQNEANDASRKVND 361 (458)
Q Consensus 345 Y~~Ac~Ea~~Ak~k~~e 361 (458)
+....++.-.+|++-..
T Consensus 121 ~~~~~~~l~kskk~Y~~ 137 (251)
T cd07653 121 LESSIKQLEKSKKAYEK 137 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 266
>PRK06247 pyruvate kinase; Provisional
Probab=23.04 E-value=1.5e+02 Score=32.21 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcCCccc
Q 012682 122 DVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLS 181 (458)
Q Consensus 122 dpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kgk~~ 181 (458)
.++.+.+..|...++.+||+-+.. |. ++..|.+.=| .||||++...+-.
T Consensus 356 ~ia~sa~~~A~~l~a~~Iv~~T~s---------G~-ta~~isk~RP-~~pI~a~t~~~~~ 404 (476)
T PRK06247 356 AISYAARDIAERLDLAALVAYTSS---------GD-TALRAARERP-PLPILALTPNPET 404 (476)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCC---------cH-HHHHHHhhCC-CCCEEEECCCHHH
Confidence 366677788899999999997654 54 7778888877 4999999876554
No 267
>PF14182 YgaB: YgaB-like protein
Probab=22.99 E-value=1.7e+02 Score=23.66 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDA 355 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~A 355 (458)
..|..|+++.|.+||....++..--.|.|..
T Consensus 43 ~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI~s 73 (79)
T PF14182_consen 43 HSIQEEISQMKKELKEIQRVFEKQTEEVIRS 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999888777776654
No 268
>PF13362 Toprim_3: Toprim domain
Probab=22.93 E-value=1.5e+02 Score=23.98 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCCCeEEEeecCCHH--hHHHHHHHHHHhccCCC
Q 012682 12 SPALSVAVAVKGNRK--SRYAVLWALEKFIPEGI 43 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~--S~~AL~wAl~~a~~~g~ 43 (458)
..+++|+|+.|.+.. .+.+..-+.+.+...|.
T Consensus 39 ~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~ 72 (96)
T PF13362_consen 39 EPGRRVIIAADNDKANEGQKAAEKAAERLEAAGI 72 (96)
T ss_pred CCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCC
Confidence 488999999999988 88888888787765543
No 269
>PLN03188 kinesin-12 family protein; Provisional
Probab=22.69 E-value=5.7e+02 Score=31.17 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-HHHHhhhH
Q 012682 393 KYETARREAECARASAEKEAAQRQE-AEMKAKHE 425 (458)
Q Consensus 393 k~~aA~eaaE~a~~~ae~Ea~kR~~-aE~ka~~e 425 (458)
+...|.+++|.+++ ++|-.||+. .||-++++
T Consensus 1219 r~~~~eqe~~~~~k--~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1219 RAMDAEQEAAEAYK--QIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 44455555555555 233345554 77777765
No 270
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=22.65 E-value=1.6e+02 Score=29.94 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=36.4
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHh-hhCCCCceEEEEcCC
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRIS-ICVPSFCTVYGVEKG 178 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vl-k~Ap~~C~VlVV~kg 178 (458)
.+.||+|..+. + . ++--+.....+|+++||+.+- |++..+ .|+ -.-.++ ++.. .||||+..-
T Consensus 175 ~~~gI~vtlI~-D--s---a~~~~m~~~~vd~VlvGAd~v~~nG~v~nk-~GT-~~lA~~Ak~~~--vPv~V~a~s 240 (303)
T TIGR00524 175 MQDGIDVTLIT-D--S---MAAYFMQKGEIDAVIVGADRIARNGDVANK-IGT-YQLAVLAKEFR--IPFFVAAPL 240 (303)
T ss_pred HHCCCCEEEEC-h--h---HHHHHccccCCCEEEEcccEEecCCCEeEh-hhH-HHHHHHHHHhC--CCEEEeccc
Confidence 34688776543 2 2 222333345799999999973 334443 375 333344 4444 899999763
No 271
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=22.62 E-value=4.7e+02 Score=24.51 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHhCCCCEEEEc----cCCCCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 121 DDVAKAIADEVASCNINKLVIG----AQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 121 Gdpa~aIve~A~e~~aDlIVmG----S~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
.+..++ ++.+.+..+|+|+|. -.+.++ ..+...+.+..|. |+|+|+..
T Consensus 34 ~~~~~~-~~~~~~~~pDlvLlDl~~~l~~~~g-------~~~i~~i~~~~p~-~~iivlt~ 85 (207)
T PRK15411 34 ETVDDL-AIACDSLRPSVVFINEDCFIHDASN-------SQRIKQIINQHPN-TLFIVFMA 85 (207)
T ss_pred CCHHHH-HHHHhccCCCEEEEeCcccCCCCCh-------HHHHHHHHHHCCC-CeEEEEEC
Confidence 455444 456777789999999 444433 2366777777774 89999864
No 272
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.41 E-value=2.1e+02 Score=25.23 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=38.0
Q ss_pred HhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEE
Q 012682 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVY 173 (458)
Q Consensus 105 ~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~Vl 173 (458)
+++..|++|... ....+.+.+++.|.+.++|.|+|.+.--... ..+. .+...+-...+..++|+
T Consensus 25 ~l~~~GfeVi~l--g~~~s~e~~v~aa~e~~adii~iSsl~~~~~-~~~~--~~~~~L~~~g~~~i~vi 88 (132)
T TIGR00640 25 AYADLGFDVDVG--PLFQTPEEIARQAVEADVHVVGVSSLAGGHL-TLVP--ALRKELDKLGRPDILVV 88 (132)
T ss_pred HHHhCCcEEEEC--CCCCCHHHHHHHHHHcCCCEEEEcCchhhhH-HHHH--HHHHHHHhcCCCCCEEE
Confidence 344578765432 2235788999999999999999977653332 2232 25555544334323433
No 273
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=22.35 E-value=6.9e+02 Score=23.89 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=46.9
Q ss_pred HHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012682 335 RIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAE 409 (458)
Q Consensus 335 rlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~~ae 409 (458)
-..|.....-|..+|++.=.++.+.+-+.. +.++.+...-+.+..-+..-+..++.++++....+..-+
T Consensus 120 ~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~------ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~ 188 (236)
T cd07651 120 EKYLEKAREKYEADCSKINSYTLQSQLTWG------KELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN 188 (236)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHcccCc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666778899999887777665443321 235556666667777777778888888888877766433
No 274
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.33 E-value=7.8e+02 Score=28.10 Aligned_cols=74 Identities=22% Similarity=0.170 Sum_probs=43.7
Q ss_pred HHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012682 336 IELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAE 409 (458)
Q Consensus 336 lELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~~ae 409 (458)
.||++-..--..--+.++.+++.+..|+...-+=+.++++++..=-....-.+.++.|.+-+-|+-+..++.++
T Consensus 545 ~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 545 KELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333334567777777777777766666777776666555555556666666555555555555443
No 275
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=22.32 E-value=4.8e+02 Score=22.01 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012682 374 SEIQLLEEKAIELAKQEKKKYETARREAECARASAE 409 (458)
Q Consensus 374 eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~~ae 409 (458)
..++..-..|..-|+.=..|..+|..+|+.||+-|+
T Consensus 45 ~~a~~~A~~A~~~AdeA~~kA~~A~aaA~~Aqq~A~ 80 (96)
T PF11839_consen 45 ASAQSAAASAQQRADEAASKADAALAAAEAAQQTAD 80 (96)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444445555566666666665555
No 276
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=22.12 E-value=1.9e+02 Score=34.38 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 012682 324 QVDVNFELEKLRIELRHVR 342 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~ 342 (458)
..|+++|..||..||.+..
T Consensus 924 ~id~~~E~~rL~K~l~kl~ 942 (995)
T PTZ00419 924 FIDLKKELAKLEKKLAKLQ 942 (995)
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 4679999999999998863
No 277
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=22.07 E-value=1.2e+03 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 012682 373 LSEIQLLEEKAIELAKQEKKKYE 395 (458)
Q Consensus 373 ~eea~~~ee~a~~~ae~EK~k~~ 395 (458)
-+|+.+.++.-.+.-++||+.-+
T Consensus 296 kee~Klekd~KKqqkekEkeEKr 318 (811)
T KOG4364|consen 296 KEETKLEKDIKKQQKEKEKEEKR 318 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444433
No 278
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=21.94 E-value=1.3e+03 Score=26.96 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=9.1
Q ss_pred ccchhhHHHHHHHHHHH
Q 012682 321 SESQVDVNFELEKLRIE 337 (458)
Q Consensus 321 s~~~~~~eaEm~rLrlE 337 (458)
.+....+++|..+|+.+
T Consensus 315 eqatkylh~enmkltrq 331 (1265)
T KOG0976|consen 315 EQATKYLHLENMKLTRQ 331 (1265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445666666555533
No 279
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.89 E-value=7.8e+02 Score=29.27 Aligned_cols=74 Identities=26% Similarity=0.199 Sum_probs=55.7
Q ss_pred HHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHH
Q 012682 339 RHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARA-SAEKEA 412 (458)
Q Consensus 339 k~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~-~ae~Ea 412 (458)
+.|-.-|+.+..+...|.+|++++.-.-.+-+.++++.....|.++.-+++--+....|.+.-..+|+ +.+.+-
T Consensus 286 ~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 286 KETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 34666788888999999999998877767777889999999998888888766666666666666665 444433
No 280
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=21.88 E-value=1.9e+02 Score=30.13 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=36.6
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
.+.||++..+. + .-+ --+..+..+|++|||+++- |++..+. |. -.-.++-+.. ..||||+.
T Consensus 216 ~~~GI~vtlI~-D-sav----~~~M~~~~Vd~VivGAd~I~~nG~v~NKi-GT-y~lA~~Ak~~-~vPfyV~A 279 (356)
T PRK08334 216 HYDGIPLKLIS-D-NMA----GFVMQQGKVDAIIVGADRIVANGDFANKI-GT-YTLAVLAKEH-GIPFFTVA 279 (356)
T ss_pred HHCCCCEEEEe-h-hHH----HHHhhhcCCCEEEECccEEecCCCEeehh-hH-HHHHHHHHHh-CCCEEEEc
Confidence 45788876544 2 222 2244456799999999973 3344443 64 3444553433 29999997
No 281
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=21.83 E-value=7.7e+02 Score=24.22 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHH-HHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRI-ELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAEC 403 (458)
Q Consensus 325 ~~~eaEm~rLrl-ELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~ 403 (458)
+.++.||-+.-. ||.....=|..+|+.+-.|++|-.+-...| ..+.++.++-.+..---.=|-.+-=++.+|..
T Consensus 119 q~i~~e~~~~t~~eveK~Kk~Y~~~c~~~e~AR~K~ekas~~K-----~~~K~~EKy~~m~~KL~~~hN~YlL~I~~An~ 193 (237)
T cd07685 119 QLLKQEYTKTTQQDIEKLKSQYRSLAKDSAQAKRKYQEASKDK-----DRDKAKEKYVKSLWKLYALHNEYVLAVRAAQL 193 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-----hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 566777776664 677777779999999999999988855433 34444445544433333444445555555443
Q ss_pred H
Q 012682 404 A 404 (458)
Q Consensus 404 a 404 (458)
-
T Consensus 194 ~ 194 (237)
T cd07685 194 H 194 (237)
T ss_pred H
Confidence 3
No 282
>PLN03188 kinesin-12 family protein; Provisional
Probab=21.77 E-value=9.9e+02 Score=29.27 Aligned_cols=86 Identities=20% Similarity=0.166 Sum_probs=46.4
Q ss_pred HHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------
Q 012682 337 ELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASA-------- 408 (458)
Q Consensus 337 ELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~~a-------- 408 (458)
+|+.-.+.-+..-.|.-+|=|.|++-|.+-+|-=.-|+|- =..|.+ ||+.-||--.-+|+-|
T Consensus 1083 kl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek------~~~ll~----~hr~i~egi~dvkkaaakag~kg~ 1152 (1320)
T PLN03188 1083 KQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEK------HIQLLA----RHRRIQEGIDDVKKAAARAGVRGA 1152 (1320)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH----HHHHHHHHHHHHHHHHHHhccccc
Confidence 4455555566666777777777777776666654444442 222322 3333333333333333
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 012682 409 EKEAAQRQEAEMKAKHEAKEKEML 432 (458)
Q Consensus 409 e~Ea~kR~~aE~ka~~e~~ek~k~ 432 (458)
+.-.-+-.-||+-|+|...||.|-
T Consensus 1153 ~~~f~~alaae~s~l~~ereker~ 1176 (1320)
T PLN03188 1153 ESKFINALAAEISALKVEREKERR 1176 (1320)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344456777777777676553
No 283
>PF13155 Toprim_2: Toprim-like
Probab=21.67 E-value=1.8e+02 Score=23.29 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=25.0
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCC
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEG 42 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g 42 (458)
+++|++|+|.++..+.+.+.....+...+
T Consensus 47 ~~~i~l~~DnD~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 47 YKKIVLAFDNDEAGRKAAEKLQKELKEEG 75 (96)
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHhhC
Confidence 38899999999999999999988776544
No 284
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=21.66 E-value=1.6e+03 Score=27.81 Aligned_cols=12 Identities=33% Similarity=0.313 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHH
Q 012682 324 QVDVNFELEKLR 335 (458)
Q Consensus 324 ~~~~eaEm~rLr 335 (458)
.+.+..++++|+
T Consensus 232 ~~~~~~~le~l~ 243 (1353)
T TIGR02680 232 LDEYRDELERLE 243 (1353)
T ss_pred HHHHHHHHHHHH
Confidence 455555555555
No 285
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.57 E-value=2.3e+02 Score=29.24 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=37.2
Q ss_pred hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 106 ~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+.+.||+|..+. + + .+- -+..+..+|++|+|+.+- |++..+ .|+ -.-.++-+.. ..||||+..
T Consensus 192 L~~~GI~vtlI~-D-s-a~~---~~M~~~~Vd~VivGAd~I~aNG~v~NK-iGT-~~lAl~Ak~~-~VPfyV~a~ 257 (329)
T PRK06371 192 LAQEGIDHAIIA-D-N-AAG---YFMRKKEIDLVIVGADRIASNGDFANK-IGT-YEKAVLAKVN-GIPFYVAAP 257 (329)
T ss_pred HHHCCCCEEEEc-c-c-HHH---HHhhhcCCCEEEECccEEecCCCEeeh-hhH-HHHHHHHHHc-CCCEEEecc
Confidence 344688876543 2 2 222 233456799999999973 334444 375 3444443333 299999975
No 286
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=21.55 E-value=5.5e+02 Score=22.41 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQN 350 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~ 350 (458)
.+.+..+..+|-+|+.....+..|+.
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~ 45 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQ 45 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665555555544
No 287
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.44 E-value=4.5e+02 Score=21.37 Aligned_cols=18 Identities=39% Similarity=0.600 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVR 342 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~ 342 (458)
+++..|++.|+-+|....
T Consensus 1 e~l~~~l~~l~~d~~~l~ 18 (94)
T PF05957_consen 1 EDLKAELEQLRADLEDLA 18 (94)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 467788888888887764
No 288
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=21.42 E-value=8e+02 Score=27.34 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=6.1
Q ss_pred EEEEEEecCC
Q 012682 46 FKLLHVRPRI 55 (458)
Q Consensus 46 l~LLHV~~~~ 55 (458)
+.|+|-++..
T Consensus 199 f~i~~~iEE~ 208 (940)
T KOG4661|consen 199 FAIIHGIEEN 208 (940)
T ss_pred cccccccccc
Confidence 6666666544
No 289
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=21.38 E-value=1.3e+02 Score=23.66 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=22.8
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCC
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEG 42 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g 42 (458)
.+.|+++.|.+...+.+.....+.+...|
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~g 74 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLG 74 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG---
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhc
Confidence 58999999999999999998888776444
No 290
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.17 E-value=2.3e+02 Score=20.83 Aligned_cols=30 Identities=40% Similarity=0.339 Sum_probs=21.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHH
Q 012682 400 EAECARASAEKEAAQRQEAEMKAKHEAKEK 429 (458)
Q Consensus 400 aaE~a~~~ae~Ea~kR~~aE~ka~~e~~ek 429 (458)
+|+--=.+||.|...|+..|.++++-...+
T Consensus 16 ~aerI~~mae~eq~hR~~~e~~~l~~~~~~ 45 (50)
T PF10097_consen 16 AAERIFAMAEKEQEHRHELEKKALKSEIRR 45 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555678888899999888887654443
No 291
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=21.13 E-value=2.2e+02 Score=20.02 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 012682 390 EKKKYETARREAEC 403 (458)
Q Consensus 390 EK~k~~aA~eaaE~ 403 (458)
||.|.-.|-..||+
T Consensus 3 eK~kaaEa~k~aEa 16 (42)
T PF07046_consen 3 EKRKAAEATKVAEA 16 (42)
T ss_pred hHHHHHHHHHHHHH
Confidence 44444333333333
No 292
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=21.10 E-value=1.1e+02 Score=25.20 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=16.5
Q ss_pred CccchhhHHHHHHHHHHHHHHHH
Q 012682 320 SSESQVDVNFELEKLRIELRHVR 342 (458)
Q Consensus 320 ~s~~~~~~eaEm~rLrlELk~t~ 342 (458)
.+..+..++ |+++|+.||+++.
T Consensus 11 ls~~e~~~k-~lE~L~~eL~~it 32 (84)
T PF04822_consen 11 LSKKEKKMK-ELERLKFELQKIT 32 (84)
T ss_pred ccHHHHHHH-HHHHHHHHHHHHH
Confidence 445556666 9999999999863
No 293
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=21.05 E-value=5.5e+02 Score=24.43 Aligned_cols=31 Identities=39% Similarity=0.512 Sum_probs=22.8
Q ss_pred EeecCCHHhHHHHHHHHHHhccCCCCeE-EEEEEecC
Q 012682 19 VAVKGNRKSRYAVLWALEKFIPEGINLF-KLLHVRPR 54 (458)
Q Consensus 19 VAVDgS~~S~~AL~wAl~~a~~~g~~~l-~LLHV~~~ 54 (458)
|..-|.+.|..|+.||.+ .|. .+ .|+|+.+.
T Consensus 2 vl~SGGkDS~~al~~a~~----~G~-~v~~l~~~~~~ 33 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALE----EGH-EVRCLITVVPE 33 (218)
T ss_pred eeecCcHHHHHHHHHHHH----cCC-EEEEEEEeccC
Confidence 567888999999999877 244 35 47787754
No 294
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=21.04 E-value=2.2e+02 Score=29.52 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=37.5
Q ss_pred hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 106 ~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
+.+.||++..+. + .. +--+..+..+|++|||+.+- |++..+ .|+ -.-.++-+.. ..||||+..-
T Consensus 202 L~~~GI~vtlI~-D--sa---~~~~M~~~~vd~VivGAd~I~~nG~v~Nk-iGT-~~lAl~Ak~~-~vPfyV~a~~ 268 (344)
T PRK05720 202 LYQAGIDVTVIT-D--NM---AAHLMQTGKIDAVIVGADRIAANGDVANK-IGT-YQLAIAAKYH-GVPFYVAAPS 268 (344)
T ss_pred HHHCCCCEEEEc-c--cH---HHHHhcccCCCEEEEcccEEecCCCEeeh-hhH-HHHHHHHHHh-CCCEEEeccc
Confidence 345688876543 2 22 22333445799999999973 334444 375 4444443333 2999999764
No 295
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.00 E-value=5.9e+02 Score=25.25 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=7.2
Q ss_pred HHHHHhhhHHHHHHHH
Q 012682 417 EAEMKAKHEAKEKEML 432 (458)
Q Consensus 417 ~aE~ka~~e~~ek~k~ 432 (458)
.-|=++.+|.+|-.|.
T Consensus 164 akEE~arkeheEylkm 179 (299)
T KOG3054|consen 164 AKEEEARKEHEEYLKM 179 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444455554443
No 296
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.84 E-value=3.3e+02 Score=25.47 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=31.4
Q ss_pred HhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCc
Q 012682 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIF 149 (458)
Q Consensus 105 ~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~ 149 (458)
+++..|.++ +.+-.+-|.+.|++.+.+.++|+|.+.......+
T Consensus 105 ~l~~~G~~v--i~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~ 147 (201)
T cd02070 105 MLEANGFEV--IDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTM 147 (201)
T ss_pred HHHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccccccH
Confidence 455678765 3333356899999999999999999987644433
No 297
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=20.50 E-value=2.4e+02 Score=28.45 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
++.+......+...|......+....+-+..+++.+...++|.||.+. |-|.+.. |...+..+-. .+ +-||
T Consensus 19 ~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~G-GDGTv~e------vingl~~~~~-~~-Lgil 89 (301)
T COG1597 19 KKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAG-GDGTVNE------VANGLAGTDD-PP-LGIL 89 (301)
T ss_pred hhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEec-CcchHHH------HHHHHhcCCC-Cc-eEEe
Confidence 344555555566678888777776555677788888778999988775 3343332 5555554432 23 7788
Q ss_pred cCC
Q 012682 176 EKG 178 (458)
Q Consensus 176 ~kg 178 (458)
|-|
T Consensus 90 P~G 92 (301)
T COG1597 90 PGG 92 (301)
T ss_pred cCC
Confidence 877
No 298
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=20.31 E-value=6.6e+02 Score=22.89 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=6.0
Q ss_pred HHhHHHHhHHHHhh
Q 012682 349 QNEANDASRKVNDL 362 (458)
Q Consensus 349 c~Ea~~Ak~k~~eL 362 (458)
-++.-.|++++.++
T Consensus 76 e~~L~~a~~ea~~i 89 (175)
T PRK14472 76 RELLAKADAEADKI 89 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 299
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=20.22 E-value=1.3e+02 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.159 Sum_probs=22.1
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhcc
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIP 40 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~ 40 (458)
..|.++.|.+..++.+..+..+.+..
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~ 73 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKP 73 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhh
Confidence 67999999999999998888776653
No 300
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=20.12 E-value=3e+02 Score=20.86 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=24.8
Q ss_pred HHHhhhHHHHHHHHHHHhcC-CCHHHHHHHhhcccchhh
Q 012682 419 EMKAKHEAKEKEMLERALNG-LEWEDMELSIRALFIIRL 456 (458)
Q Consensus 419 E~ka~~e~~ek~k~~~~l~~-YtieEIe~AT~~f~~~~~ 456 (458)
.+++-...++.-++....-. +|.+|++.+...|+.-.|
T Consensus 20 ~l~~~~~~e~~~~lA~~~Gf~ft~~el~~~~~elsd~eL 58 (64)
T TIGR03798 20 KLKAAEDPEDRVAIAKEAGFEFTGEDLKEAGEELSDEEL 58 (64)
T ss_pred HHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHhhCCHHHH
Confidence 45554555555554443333 999999999888886544
No 301
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.11 E-value=2.9e+02 Score=28.14 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=35.1
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
.+.||++..++ +...-.+++ .+|.++||+++- |++..+ .|...=.-..|.+. .||||+..-
T Consensus 167 ~~~gI~~~~I~---Dsa~~~~~~-----~vd~VivGad~I~~nG~lvnk-iGT~~lA~~A~e~~--~Pf~v~aes 230 (301)
T COG1184 167 RQSGIPVTVIV---DSAVGAFMS-----RVDKVLVGADAILANGALVNK-IGTSPLALAARELR--VPFYVVAES 230 (301)
T ss_pred HHcCCceEEEe---chHHHHHHH-----hCCEEEECccceecCCcEEec-cchHHHHHHHHHhC--CCEEEEeee
Confidence 34677765444 233333332 489999999973 344433 36422233445555 899999764
No 302
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.08 E-value=1.6e+03 Score=27.19 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=32.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhh
Q 012682 322 ESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCK 366 (458)
Q Consensus 322 ~~~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k 366 (458)
...+..+.++..|+.++...-..+.....+....+.+..+|....
T Consensus 260 ~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~ 304 (1163)
T COG1196 260 EELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI 304 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888888777777776666654433
Done!