Query 012682
Match_columns 458
No_of_seqs 350 out of 1228
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 3.7E-24 1.3E-28 188.1 17.3 143 11-176 2-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 6.5E-24 2.2E-28 190.3 17.0 149 13-179 4-161 (162)
3 3fg9_A Protein of universal st 99.9 3.6E-23 1.2E-27 184.5 17.2 142 10-176 11-156 (156)
4 1tq8_A Hypothetical protein RV 99.9 1.3E-23 4.6E-28 190.2 13.8 149 6-179 9-160 (163)
5 3idf_A USP-like protein; unive 99.9 2.9E-23 9.9E-28 181.0 15.1 136 14-176 1-138 (138)
6 3hgm_A Universal stress protei 99.9 8.2E-24 2.8E-28 185.9 9.7 143 14-175 2-147 (147)
7 2dum_A Hypothetical protein PH 99.9 9.6E-23 3.3E-27 184.3 15.2 152 13-179 4-158 (170)
8 2gm3_A Unknown protein; AT3G01 99.9 1.2E-22 4.1E-27 184.7 14.1 150 12-179 3-165 (175)
9 2z08_A Universal stress protei 99.9 1.3E-22 4.3E-27 177.1 13.0 135 14-176 2-137 (137)
10 3tnj_A Universal stress protei 99.9 1.2E-22 4.1E-27 179.5 12.0 144 12-178 4-148 (150)
11 3dlo_A Universal stress protei 99.9 4.2E-22 1.4E-26 178.9 15.6 131 13-176 23-155 (155)
12 3fdx_A Putative filament prote 99.9 3.8E-22 1.3E-26 174.6 12.2 138 14-176 1-143 (143)
13 1jmv_A USPA, universal stress 99.8 1.2E-20 4.1E-25 164.9 9.4 136 14-178 2-139 (141)
14 3olq_A Universal stress protei 99.8 1.3E-19 4.5E-24 179.4 14.9 147 13-179 6-152 (319)
15 3ab8_A Putative uncharacterize 99.8 1.2E-19 4E-24 175.6 12.1 148 15-178 1-150 (268)
16 3mt0_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 175.1 13.3 137 13-178 133-277 (290)
17 3cis_A Uncharacterized protein 99.8 6.7E-19 2.3E-23 174.3 15.8 141 13-179 18-163 (309)
18 1q77_A Hypothetical protein AQ 99.8 5.9E-19 2E-23 153.7 12.5 131 13-176 3-138 (138)
19 3loq_A Universal stress protei 99.8 1.9E-19 6.4E-24 176.9 9.1 143 13-179 21-164 (294)
20 3cis_A Uncharacterized protein 99.8 2.6E-18 8.9E-23 170.0 15.9 136 12-177 169-306 (309)
21 3olq_A Universal stress protei 99.8 5.4E-18 1.8E-22 167.8 15.5 144 12-179 154-307 (319)
22 3loq_A Universal stress protei 99.8 3.9E-18 1.3E-22 167.4 13.5 124 12-178 168-291 (294)
23 3mt0_A Uncharacterized protein 99.7 6.9E-18 2.3E-22 165.5 12.7 124 13-178 6-129 (290)
24 3ab8_A Putative uncharacterize 99.7 2.5E-16 8.4E-21 152.2 13.1 117 12-176 152-268 (268)
25 3a2k_A TRNA(Ile)-lysidine synt 92.1 0.71 2.4E-05 47.9 10.8 98 12-145 16-129 (464)
26 1wy5_A TILS, hypothetical UPF0 90.3 2 6.8E-05 42.0 11.5 97 12-145 22-135 (317)
27 2efl_A Formin-binding protein 89.4 6 0.0002 37.7 14.0 81 325-405 126-206 (305)
28 2efk_A CDC42-interacting prote 86.0 4.9 0.00017 38.4 11.0 82 325-406 119-200 (301)
29 2iel_A Hypothetical protein TT 83.7 5.6 0.00019 34.4 8.8 78 92-175 53-133 (138)
30 3haj_A Human pacsin2 F-BAR; pa 80.5 11 0.00036 39.2 11.5 75 333-407 147-221 (486)
31 2x3v_A Syndapin I, protein kin 79.9 13 0.00044 36.2 11.4 77 330-406 142-218 (337)
32 1k92_A Argininosuccinate synth 78.8 8.1 0.00028 40.0 9.8 38 12-54 8-45 (455)
33 3qwe_A GMIP, GEM-interacting p 77.4 16 0.00056 35.2 10.9 85 322-406 101-205 (279)
34 1ni5_A Putative cell cycle pro 75.8 5.1 0.00018 41.0 7.3 40 13-53 12-52 (433)
35 1zun_A Sulfate adenylyltransfe 74.8 15 0.00053 36.0 10.2 38 14-52 46-83 (325)
36 3vem_A Helicase protein MOM1; 72.6 24 0.00082 29.4 9.1 28 320-347 30-57 (115)
37 4dyl_A Tyrosine-protein kinase 70.8 14 0.00048 37.4 9.1 74 328-406 125-199 (406)
38 3aco_A Pacsin2, protein kinase 70.0 9.7 0.00033 37.5 7.6 83 325-407 139-228 (350)
39 1sur_A PAPS reductase; assimil 70.0 34 0.0012 30.8 10.8 34 15-53 45-78 (215)
40 3oja_B Anopheles plasmodium-re 68.3 1.2E+02 0.004 31.6 16.3 27 325-351 459-485 (597)
41 3iox_A AGI/II, PA; alpha helix 67.5 85 0.0029 32.5 13.9 115 327-451 14-155 (497)
42 3abh_A Pacsin2, protein kinase 66.7 15 0.00052 35.3 8.0 83 325-407 139-228 (312)
43 2dfs_A Myosin-5A; myosin-V, in 66.7 1.1E+02 0.0036 35.2 16.0 14 104-117 475-488 (1080)
44 4grd_A N5-CAIR mutase, phospho 64.8 14 0.00049 33.1 6.7 64 102-176 31-97 (173)
45 3bl5_A Queuosine biosynthesis 64.0 52 0.0018 29.2 10.8 35 15-54 4-38 (219)
46 2nz2_A Argininosuccinate synth 63.0 15 0.00051 37.4 7.4 36 14-54 5-40 (413)
47 1kor_A Argininosuccinate synth 62.8 22 0.00075 36.0 8.6 35 15-53 1-35 (400)
48 2oq2_A Phosphoadenosine phosph 62.6 13 0.00046 35.0 6.6 37 14-52 41-77 (261)
49 2c5s_A THII, probable thiamine 62.6 25 0.00084 35.6 9.0 37 12-53 185-221 (413)
50 3hnw_A Uncharacterized protein 62.5 16 0.00056 31.4 6.5 52 324-375 84-135 (138)
51 1cii_A Colicin IA; bacteriocin 61.4 1.2E+02 0.0041 31.2 13.3 75 345-428 358-432 (602)
52 2xry_A Deoxyribodipyrimidine p 59.5 39 0.0013 34.8 10.0 126 16-181 38-165 (482)
53 2ywx_A Phosphoribosylaminoimid 58.8 24 0.00082 31.1 6.9 66 101-177 17-82 (157)
54 4b4k_A N5-carboxyaminoimidazol 58.8 26 0.0009 31.5 7.3 66 101-177 40-108 (181)
55 2zuo_A MVP, major vault protei 58.4 1.9E+02 0.0065 32.0 15.2 43 402-447 771-813 (861)
56 3kuu_A Phosphoribosylaminoimid 58.0 22 0.00074 31.9 6.6 65 101-176 30-97 (174)
57 1xmp_A PURE, phosphoribosylami 57.3 27 0.00091 31.2 7.0 66 101-177 29-97 (170)
58 3oow_A Phosphoribosylaminoimid 57.2 27 0.00092 31.1 7.0 66 101-177 23-91 (166)
59 2wsi_A FAD synthetase; transfe 57.0 67 0.0023 31.0 10.7 98 15-151 54-173 (306)
60 3trh_A Phosphoribosylaminoimid 56.2 19 0.00065 32.1 5.9 66 101-177 24-92 (169)
61 2pg3_A Queuosine biosynthesis 55.8 84 0.0029 28.4 10.7 34 15-53 3-36 (232)
62 3vkg_A Dynein heavy chain, cyt 55.5 84 0.0029 40.3 13.4 10 137-146 1648-1657(3245)
63 1u11_A PURE (N5-carboxyaminoim 55.3 25 0.00087 31.7 6.6 66 101-177 39-107 (182)
64 3ors_A N5-carboxyaminoimidazol 54.6 28 0.00095 30.9 6.7 65 101-176 21-88 (163)
65 1o4v_A Phosphoribosylaminoimid 52.7 30 0.001 31.3 6.6 65 101-176 31-98 (183)
66 3g40_A Na-K-CL cotransporter; 52.3 61 0.0021 31.4 9.2 122 15-178 21-147 (294)
67 2ywb_A GMP synthase [glutamine 52.1 67 0.0023 33.3 10.4 34 15-53 210-243 (503)
68 1iv0_A Hypothetical protein; r 52.0 21 0.00073 28.7 5.1 51 122-177 38-93 (98)
69 2dpl_A GMP synthetase, GMP syn 51.9 70 0.0024 30.8 9.9 36 15-54 21-56 (308)
70 3lp6_A Phosphoribosylaminoimid 51.2 27 0.00091 31.3 6.0 65 101-176 25-92 (174)
71 2hma_A Probable tRNA (5-methyl 49.0 46 0.0016 33.2 8.3 38 12-54 7-44 (376)
72 3rg8_A Phosphoribosylaminoimid 48.9 34 0.0011 30.2 6.3 65 101-176 20-88 (159)
73 2b5u_A Colicin E3; high resolu 45.7 82 0.0028 32.7 9.3 26 426-452 351-376 (551)
74 3oja_B Anopheles plasmodium-re 45.5 2.7E+02 0.0093 28.7 14.0 36 324-359 451-486 (597)
75 3tqi_A GMP synthase [glutamine 45.2 48 0.0016 34.7 7.9 35 15-53 231-265 (527)
76 2o8v_A Phosphoadenosine phosph 44.4 85 0.0029 29.1 8.9 33 15-52 46-78 (252)
77 1o97_C Electron transferring f 43.5 22 0.00075 33.8 4.6 61 123-186 100-164 (264)
78 2bzb_A Conserved domain protei 42.8 32 0.0011 25.4 4.4 39 324-362 3-41 (62)
79 1efp_B ETF, protein (electron 42.7 45 0.0016 31.4 6.7 61 123-186 101-163 (252)
80 4dk0_A Putative MACA; alpha-ha 41.2 1.3E+02 0.0046 28.9 10.2 36 325-360 66-101 (369)
81 1efv_B Electron transfer flavo 39.7 46 0.0016 31.4 6.2 61 123-186 104-166 (255)
82 3umv_A Deoxyribodipyrimidine p 39.7 71 0.0024 33.3 8.1 133 13-181 36-172 (506)
83 3i2w_A Syndapin, LD46328P; EFC 39.0 17 0.00057 34.6 3.0 72 331-406 130-205 (290)
84 2avr_X Adhesion A; antiparalle 38.8 1.3E+02 0.0045 25.1 8.0 20 324-343 4-23 (119)
85 3k32_A Uncharacterized protein 36.7 64 0.0022 28.9 6.5 35 14-53 6-40 (203)
86 2wq7_A RE11660P; lyase-DNA com 36.7 99 0.0034 32.3 8.8 77 97-181 89-165 (543)
87 2der_A TRNA-specific 2-thiouri 36.6 1.3E+02 0.0044 29.9 9.3 36 13-53 16-51 (380)
88 2j07_A Deoxyribodipyrimidine p 36.3 1.1E+02 0.0039 30.7 8.9 75 96-181 51-125 (420)
89 1gpm_A GMP synthetase, XMP ami 36.2 1.2E+02 0.0042 31.4 9.4 35 15-53 228-262 (525)
90 1vl2_A Argininosuccinate synth 35.9 1.3E+02 0.0045 30.6 9.2 43 6-53 6-48 (421)
91 3iv3_A Tagatose 1,6-diphosphat 33.9 1.4E+02 0.0047 29.4 8.7 117 30-179 111-255 (332)
92 1vhx_A Putative holliday junct 33.8 15 0.00053 31.9 1.6 53 121-177 41-98 (150)
93 2oa5_A Hypothetical protein BQ 33.3 21 0.00073 29.4 2.3 25 321-345 7-31 (110)
94 2c0s_A Conserved domain protei 33.3 36 0.0012 25.3 3.4 39 324-362 3-41 (64)
95 2qv7_A Diacylglycerol kinase D 32.7 96 0.0033 30.0 7.4 72 99-179 44-116 (337)
96 3ecs_A Translation initiation 32.5 52 0.0018 32.2 5.4 61 107-178 169-232 (315)
97 3vkg_A Dynein heavy chain, cyt 31.1 3.8E+02 0.013 34.5 13.7 9 14-22 1373-1381(3245)
98 4efa_E V-type proton ATPase su 31.0 3E+02 0.01 25.0 12.6 36 323-371 9-44 (233)
99 3qja_A IGPS, indole-3-glycerol 29.9 2.6E+02 0.0089 26.3 9.8 73 99-181 151-223 (272)
100 2j1d_G DAAM1, disheveled-assoc 29.4 4.7E+02 0.016 26.6 13.1 23 323-345 293-315 (483)
101 3tul_A Cell invasion protein S 29.1 2.8E+02 0.0096 24.0 10.8 72 337-408 56-137 (158)
102 1i4n_A Indole-3-glycerol phosp 28.8 1.8E+02 0.006 27.3 8.3 75 98-182 138-213 (251)
103 2amj_A Modulator of drug activ 28.5 97 0.0033 27.7 6.2 49 96-146 33-81 (204)
104 3mq9_A Bone marrow stromal ant 28.5 4.5E+02 0.016 26.2 14.2 43 96-143 35-78 (471)
105 1i84_S Smooth muscle myosin he 28.4 2.2E+02 0.0074 32.8 10.5 23 328-350 856-878 (1184)
106 3fy4_A 6-4 photolyase; DNA rep 28.3 96 0.0033 32.5 6.9 45 97-144 68-112 (537)
107 2yxb_A Coenzyme B12-dependent 28.0 95 0.0033 26.8 5.9 65 106-175 42-106 (161)
108 2l69_A Rossmann 2X3 fold prote 27.7 42 0.0014 27.0 3.0 49 97-146 13-61 (134)
109 3m3w_A Pacsin3, protein kinase 27.6 81 0.0028 30.5 5.8 79 325-407 130-219 (320)
110 1np7_A DNA photolyase; protein 27.0 1.7E+02 0.006 29.9 8.6 78 96-181 64-141 (489)
111 3ih5_A Electron transfer flavo 25.8 77 0.0026 29.0 5.0 87 14-146 3-102 (217)
112 1i84_S Smooth muscle myosin he 25.8 3.5E+02 0.012 31.1 11.6 43 324-366 859-901 (1184)
113 3fpp_A Macrolide-specific effl 25.6 1.6E+02 0.0056 28.0 7.7 35 325-359 65-99 (341)
114 2i1j_A Moesin; FERM, coiled-co 25.6 58 0.002 34.5 4.6 36 16-51 15-50 (575)
115 2h31_A Multifunctional protein 25.4 98 0.0034 31.6 6.1 67 100-177 282-352 (425)
116 1cii_A Colicin IA; bacteriocin 25.2 5.8E+02 0.02 26.3 13.7 21 330-350 350-370 (602)
117 2j4d_A Cryptochrome 3, cryptoc 25.1 2.4E+02 0.0084 29.1 9.4 79 96-180 99-177 (525)
118 2yvk_A Methylthioribose-1-phos 25.1 1.1E+02 0.0037 30.7 6.3 63 106-177 229-294 (374)
119 1vbk_A Hypothetical protein PH 25.0 1.7E+02 0.0058 28.1 7.6 37 10-52 175-211 (307)
120 3bvp_A INT, TP901-1 integrase; 24.9 1.2E+02 0.0041 25.1 5.7 45 101-145 29-81 (138)
121 1nu0_A Hypothetical protein YQ 24.7 45 0.0015 28.5 3.0 52 122-177 40-96 (138)
122 1ccw_A Protein (glutamate muta 24.6 1.7E+02 0.0058 24.3 6.7 66 105-175 26-91 (137)
123 3hly_A Flavodoxin-like domain; 24.6 1.6E+02 0.0054 25.0 6.6 40 106-148 25-64 (161)
124 3tvs_A Cryptochrome-1; circadi 24.1 1.6E+02 0.0054 30.8 7.6 50 96-149 60-112 (538)
125 2i2x_B MTAC, methyltransferase 24.1 1.2E+02 0.0042 28.2 6.2 64 106-175 147-210 (258)
126 1t9k_A Probable methylthioribo 23.6 1.2E+02 0.004 30.1 6.2 63 106-177 204-269 (347)
127 2a0u_A Initiation factor 2B; S 23.2 1.2E+02 0.004 30.5 6.1 63 107-178 234-299 (383)
128 2bon_A Lipid kinase; DAG kinas 23.1 1.7E+02 0.0058 28.1 7.3 74 103-184 50-126 (332)
129 3fni_A Putative diflavin flavo 22.8 1.4E+02 0.0048 25.4 5.9 41 105-148 28-69 (159)
130 1vb5_A Translation initiation 22.5 1.5E+02 0.005 28.2 6.5 59 109-178 159-220 (276)
131 2yyb_A Hypothetical protein TT 22.2 99 0.0034 28.7 5.1 35 7-50 30-64 (242)
132 2zuo_A MVP, major vault protei 21.9 8.4E+02 0.029 27.0 14.2 35 343-377 668-703 (861)
133 2i1j_A Moesin; FERM, coiled-co 21.4 82 0.0028 33.3 4.8 32 332-363 338-369 (575)
134 1got_G GT-gamma; complex (GTP- 20.9 39 0.0013 25.9 1.5 32 322-353 17-48 (73)
135 3i00_A HIP-I, huntingtin-inter 20.8 3.6E+02 0.012 22.3 7.9 36 325-363 18-53 (120)
136 3ezx_A MMCP 1, monomethylamine 20.5 93 0.0032 28.3 4.4 34 106-141 116-149 (215)
137 3haj_A Human pacsin2 F-BAR; pa 20.3 6.7E+02 0.023 25.3 11.5 12 442-453 268-279 (486)
138 1dnp_A DNA photolyase; DNA rep 20.1 1.9E+02 0.0064 29.6 7.1 79 96-181 55-134 (471)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.92 E-value=3.7e-24 Score=188.15 Aligned_cols=143 Identities=15% Similarity=0.107 Sum_probs=120.8
Q ss_pred CCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHH
Q 012682 11 NSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQE 90 (458)
Q Consensus 11 ~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~ 90 (458)
+..+++||||+|+|+.|..|++||+.++...++. |++|||+++..... .+. ......+.+.
T Consensus 2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~-l~ll~v~~~~~~~~----------~~~--------~~~~~~~~~~ 62 (146)
T 3s3t_A 2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQAN-LTALYVVDDSAYHT----------PAL--------DPVLSELLDA 62 (146)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCE-EEEEEEEECCCCCC----------GGG--------HHHHHHHHHH
T ss_pred CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCE-EEEEEEecCccccc----------ccc--------ccccHHHHHH
Confidence 3568999999999999999999999999877784 99999998753211 000 0122345556
Q ss_pred HHHHHHHHHHHHHHHhhcCCC-eEEEEEEecCCHHHHHHH-HHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCC
Q 012682 91 EKWKTDRLLLPFRNMCAQRRV-EVEVKVIESDDVAKAIAD-EVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPS 168 (458)
Q Consensus 91 ~~~~a~~lL~~~~~~~~~~gV-~ve~vvle~Gdpa~aIve-~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~ 168 (458)
..+.+++.|..+...+...|+ .++..+.. |+|++.|++ +|++.++||||||++|++++.++|+|| |+.+|+++++
T Consensus 63 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~-g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs-~~~~vl~~~~- 139 (146)
T 3s3t_A 63 EAAHAKDAMRQRQQFVATTSAPNLKTEISY-GIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGS-TTSYVVDHAP- 139 (146)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCCEEEEEE-ECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCH-HHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHhcCCcceEEEEec-CChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcc-hHHHHhccCC-
Confidence 677788899999999988899 88888876 899999999 999999999999999999999999996 9999999999
Q ss_pred CceEEEEc
Q 012682 169 FCTVYGVE 176 (458)
Q Consensus 169 ~C~VlVV~ 176 (458)
|||+||+
T Consensus 140 -~pVlvV~ 146 (146)
T 3s3t_A 140 -CNVIVIR 146 (146)
T ss_dssp -SEEEEEC
T ss_pred -CCEEEeC
Confidence 9999995
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.91 E-value=6.5e-24 Score=190.32 Aligned_cols=149 Identities=7% Similarity=0.006 Sum_probs=119.4
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCC-----CCCCCCCcccCCCCCC-Cc--c-cccccchHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRI-----TSVPTPTSLAIGHPVG-NF--I-PIEQVRDDV 83 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~-----~~~~~p~~~~~~~~~g-~~--v-p~~~~~~~~ 83 (458)
.+++||||+|+|+.|..|++||+.++...++ +|++|||+++. .+.. ++ .. + |. ..+.
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~ 69 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAE-EVILLHVIDEREIKKRDIFS----------LLLGVAGLNKS---VEEF 69 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCC-EEEEEEEEEGGGTC------------------------------CHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCC-eEEEEEEecCcccccccccc----------ccccccccccc---hhhh
Confidence 5899999999999999999999999987777 49999999763 1100 10 00 1 10 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHh
Q 012682 84 AAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRIS 163 (458)
Q Consensus 84 ~~~~~~~~~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vl 163 (458)
...+.+...+.+++.|..+.+.+...|++++..+.. |+|+++|+++|++.++|+||||+||++++.++|+|| |+.+|+
T Consensus 70 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~-G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GS-v~~~vl 147 (162)
T 1mjh_A 70 ENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVV-GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGS-VTENVI 147 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEcC-CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecc-hHHHHH
Confidence 233455566777888999988888899999888776 999999999999999999999999999999999996 999999
Q ss_pred hhCCCCceEEEEcCCc
Q 012682 164 ICVPSFCTVYGVEKGK 179 (458)
Q Consensus 164 k~Ap~~C~VlVV~kgk 179 (458)
++++ |||+||+.+.
T Consensus 148 ~~~~--~pVlvv~~~~ 161 (162)
T 1mjh_A 148 KKSN--KPVLVVKRKN 161 (162)
T ss_dssp HHCC--SCEEEECCCC
T ss_pred HhCC--CCEEEEeCCC
Confidence 9998 9999998653
No 3
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.90 E-value=3.6e-23 Score=184.51 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=116.5
Q ss_pred CCCCCCeEEEeec--CCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHH
Q 012682 10 PNSPALSVAVAVK--GNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAY 87 (458)
Q Consensus 10 ~~~~~~~ILVAVD--gS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~ 87 (458)
....+++||||+| +|+.|..|++||+.++...++. |++|||+++..+.. .+.. . ..+
T Consensus 11 ~~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~-l~ll~v~~~~~~~~----------~~~~------~----~~~ 69 (156)
T 3fg9_A 11 EPLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVP-LGICSVLESEDINI----------FDSL------T----PSK 69 (156)
T ss_dssp SCCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCC-EEEEEEECCCCTTC----------CCSS------H----HHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCE-EEEEEEEeCCCccc----------cccC------C----HHH
Confidence 3457999999999 9999999999999999877885 99999998753211 1111 1 133
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC-eEEEEEEecCCHHHHHHHH-HHhCCCCEEEEccCCCCCccccccccchhHHHhhh
Q 012682 88 KQEEKWKTDRLLLPFRNMCAQRRV-EVEVKVIESDDVAKAIADE-VASCNINKLVIGAQSQGIFTWKFKKNNLSSRISIC 165 (458)
Q Consensus 88 ~~~~~~~a~~lL~~~~~~~~~~gV-~ve~vvle~Gdpa~aIve~-A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~ 165 (458)
.+...+.+++.|..+.+.+...|+ .++..+..+|+|+++|+++ |++.++|+||||++|++++. +|+|| |+.+|+++
T Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs-~~~~vl~~ 147 (156)
T 3fg9_A 70 IQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGA-IGPRLARK 147 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecc-hHHHHHHh
Confidence 445566778888888888888899 4888877669999999999 99999999999999999997 58996 99999999
Q ss_pred CCCCceEEEEc
Q 012682 166 VPSFCTVYGVE 176 (458)
Q Consensus 166 Ap~~C~VlVV~ 176 (458)
+| |||+||+
T Consensus 148 a~--~PVlvV~ 156 (156)
T 3fg9_A 148 AP--ISVIVVR 156 (156)
T ss_dssp CS--SEEEEEC
T ss_pred CC--CCEEEeC
Confidence 99 9999995
No 4
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.90 E-value=1.3e-23 Score=190.20 Aligned_cols=149 Identities=14% Similarity=0.083 Sum_probs=112.4
Q ss_pred cccCCCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEE--EEecCCCCCCCCCcccCCCCCCCcccccccchHH
Q 012682 6 IVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLL--HVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDV 83 (458)
Q Consensus 6 ~~~~~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LL--HV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~ 83 (458)
..+-....+++||||+|+|+.|..|++||+.++. .++ +|+|| ||+++..+.. . ...+
T Consensus 9 ~~~~~~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a-~l~ll~a~v~~~~~~~~-~----------~~~~-------- 67 (163)
T 1tq8_A 9 GGHMSLSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADA-KLIIASAYLPQHEDARA-A----------DILK-------- 67 (163)
T ss_dssp ----CCCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTS-EEEEEEECCC-------------------------------
T ss_pred CCccccccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCC-EEEEEEeeeccCccccc-c----------cccc--------
Confidence 3455667899999999999999999999999998 877 59999 8876532100 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCe-EEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHH
Q 012682 84 AAAYKQEEKWKTDRLLLPFRNMCAQRRVE-VEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRI 162 (458)
Q Consensus 84 ~~~~~~~~~~~a~~lL~~~~~~~~~~gV~-ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~V 162 (458)
...+.+...+.+++.|..+...+...|++ ++..++. |+|+++|+++|++.++||||||++|++++.++|+|| |+.+|
T Consensus 68 ~~~~~~~~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~-G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGS-va~~v 145 (163)
T 1tq8_A 68 DESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIV-GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGS-VPANV 145 (163)
T ss_dssp --------CCTHHHHHHHHHHHHHTTTCCEEEEEEEC-SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBB-HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEec-CCHHHHHHHHHHhcCCCEEEECCCCCCcccceeecc-HHHHH
Confidence 01122233445677888888888888998 8888776 999999999999999999999999999999999996 99999
Q ss_pred hhhCCCCceEEEEcCCc
Q 012682 163 SICVPSFCTVYGVEKGK 179 (458)
Q Consensus 163 lk~Ap~~C~VlVV~kgk 179 (458)
+++++ |||+||+...
T Consensus 146 l~~a~--~PVlvV~~~~ 160 (163)
T 1tq8_A 146 SRRAK--VDVLIVHTTE 160 (163)
T ss_dssp HHHTT--CEEEEECCC-
T ss_pred HHhCC--CCEEEEeCCC
Confidence 99999 9999998644
No 5
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.90 E-value=2.9e-23 Score=180.95 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=113.8
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHh-ccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHH
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKF-IPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a-~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
+++||||+|+|+.|..|++||+.++ ...++ .|++|||+++.... ... ......+.+..+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a-~l~ll~v~~~~~~~-------------~~~------~~~~~~~~~~~~ 60 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADC-TLTLIHVKPEFMLY-------------GEA------VLAAYDEIEMKE 60 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTE-EEEEEEEECCCCCC-------------HHH------HHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCC-EEEEEEEecCCCcc-------------ccc------ccCcHHHHHHHH
Confidence 4799999999999999999999999 77777 59999999875211 000 011123344555
Q ss_pred -HHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCce
Q 012682 93 -WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (458)
Q Consensus 93 -~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~ 171 (458)
+.+++.|..+...+...|++++..+.. |+|+++|+++++ ++||||||++|++++.++| || |+.+|+++++ ||
T Consensus 61 ~~~~~~~l~~~~~~~~~~g~~~~~~v~~-g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs-~~~~vl~~~~--~p 133 (138)
T 3idf_A 61 EEKAKLLTQKFSTFFTEKGINPFVVIKE-GEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-AS-HQDDFIQKAP--IP 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCEEEEEE-SCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CC-TTCHHHHHCS--SC
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEec-CChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-Cc-HHHHHHhcCC--CC
Confidence 777889999999998899999988876 899999999999 9999999999999999999 96 9999999999 99
Q ss_pred EEEEc
Q 012682 172 VYGVE 176 (458)
Q Consensus 172 VlVV~ 176 (458)
|+||+
T Consensus 134 Vlvv~ 138 (138)
T 3idf_A 134 VLIVK 138 (138)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
No 6
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.90 E-value=8.2e-24 Score=185.89 Aligned_cols=143 Identities=14% Similarity=0.058 Sum_probs=113.5
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHH
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKW 93 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~ 93 (458)
+++||||+|+|+.|..|++||+.++...++ .|++|||+++...... .....+. +..+.+.+..++
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a-~l~ll~v~~~~~~~~~---------~~~~~~~-----~~~~~~~~~~~~ 66 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGA-ELYILCVFKHHSLLEA---------SLSMARP-----EQLDIPDDALKD 66 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCC-EEEEEEEECCHHHHHH---------TBSSCCC-----GGGCCCTTHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCC-EEEEEEEecCcccccc---------cccccCh-----hhhhhHHHHHHH
Confidence 689999999999999999999999987788 4999999986420000 0000010 000111223445
Q ss_pred HHHHHHHHHHHHhhcCCCeE---EEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCc
Q 012682 94 KTDRLLLPFRNMCAQRRVEV---EVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFC 170 (458)
Q Consensus 94 ~a~~lL~~~~~~~~~~gV~v---e~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C 170 (458)
.+++.+..+...+...|+++ +..+.. |+|+++|+++|++.++||||||++|++++.++|+|| |+.+|++++| |
T Consensus 67 ~~~~~l~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs-~~~~vl~~~~--~ 142 (147)
T 3hgm_A 67 YATEIAVQAKTRATELGVPADKVRAFVKG-GRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGS-VAQRVAGSAH--C 142 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE-SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCH-HHHHHHHHCS--S
T ss_pred HHHHHHHHHHHHHHhcCCCccceEEEEec-CCHHHHHHHHHHHhCCCEEEEeCCCCccccceeecc-HHHHHHhhCC--C
Confidence 66788888888888889888 877766 999999999999999999999999999999999996 9999999999 9
Q ss_pred eEEEE
Q 012682 171 TVYGV 175 (458)
Q Consensus 171 ~VlVV 175 (458)
||+||
T Consensus 143 pVlvV 147 (147)
T 3hgm_A 143 PVLVV 147 (147)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 99997
No 7
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.89 E-value=9.6e-23 Score=184.30 Aligned_cols=152 Identities=13% Similarity=-0.084 Sum_probs=113.0
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccc-hHHHHHHHHHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVR-DDVAAAYKQEE 91 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~-~~~~~~~~~~~ 91 (458)
.+++||||+|+|+.|..|++||+.++...++ .|++|||+++..... . +..++..... ......+.+..
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a-~l~ll~v~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~ 72 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVG-EVILLHVIDEGTLEE-L---------MDGYSFFYDNAEIELKDIKEKL 72 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCS-EEEEEEEEETTGGGC-C---------C------------CCTTSHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCC-EEEEEEEecCccccc-c---------ccccccccccccccHHHHHHHH
Confidence 4799999999999999999999999987777 499999997642100 0 0000000000 00000122334
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEE--EEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCC
Q 012682 92 KWKTDRLLLPFRNMCAQRRVEVEV--KVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSF 169 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~ve~--vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~ 169 (458)
.+.+++.|..+...+...|++++. .+.. |+|++.|+++|++.++||||||++|++++.++|+|| |+.+|+++++
T Consensus 73 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~-g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gs-v~~~vl~~~~-- 148 (170)
T 2dum_A 73 KEEASRKLQEKAEEVKRAFRAKNVRTIIRF-GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGS-TVMRVLRKTK-- 148 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCH-HHHHHHHHCS--
T ss_pred HHHHHHHHHHHHHHHHHcCCceeeeeEEec-CChHHHHHHHHHHcCCCEEEECCCCCCccccceech-HHHHHHHhCC--
Confidence 456677788888877777888887 6665 999999999999999999999999999999999996 9999999998
Q ss_pred ceEEEEcCCc
Q 012682 170 CTVYGVEKGK 179 (458)
Q Consensus 170 C~VlVV~kgk 179 (458)
|||+||+.+.
T Consensus 149 ~PVlvv~~~~ 158 (170)
T 2dum_A 149 KPVLIIKEVD 158 (170)
T ss_dssp SCEEEECCCC
T ss_pred CCEEEEccCC
Confidence 9999998654
No 8
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.89 E-value=1.2e-22 Score=184.72 Aligned_cols=150 Identities=25% Similarity=0.307 Sum_probs=105.8
Q ss_pred CCCCeEEEeecCCH---------HhHHHHHHHHHHhcc---CCCCeEEEEEEecCCCCCCCCCcccCCCCCCC-cccccc
Q 012682 12 SPALSVAVAVKGNR---------KSRYAVLWALEKFIP---EGINLFKLLHVRPRITSVPTPTSLAIGHPVGN-FIPIEQ 78 (458)
Q Consensus 12 ~~~~~ILVAVDgS~---------~S~~AL~wAl~~a~~---~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~-~vp~~~ 78 (458)
..+++||||||+|+ .|..||+||+.++.. .++ .|+||||+++... ... . .+. +.
T Consensus 3 ~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a-~l~ll~v~~~~~~-~~~---~----~~~~~~---- 69 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDF-KILLLHVQVVDED-GFD---D----VDSIYA---- 69 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSE-EEEEEEEEC------------------CCCC----
T ss_pred CCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCC-EEEEEEEeecccc-ccc---c----cccccC----
Confidence 35799999999999 999999999998744 356 5999999865310 000 0 000 10
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccch
Q 012682 79 VRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNL 158 (458)
Q Consensus 79 ~~~~~~~~~~~~~~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsV 158 (458)
.+.....+.+...+.+++.|..+...+...|+.++..+.. |+|++.|+++|++.++||||||++|++++.++|+|| |
T Consensus 70 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~-G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gs-v 146 (175)
T 2gm3_A 70 -SPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKT-GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGT-V 146 (175)
T ss_dssp -SHHHHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-SCHHHHHHHHHHHHCCSEEEEEECCCC--------C-H
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEec-CCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCc-h
Confidence 0122223333344556778888888888889999888776 999999999999999999999999999999999996 9
Q ss_pred hHHHhhhCCCCceEEEEcCCc
Q 012682 159 SSRISICVPSFCTVYGVEKGK 179 (458)
Q Consensus 159 s~~Vlk~Ap~~C~VlVV~kgk 179 (458)
+.+|+++++ |||+||+.+.
T Consensus 147 a~~vl~~a~--~pVlvv~~~~ 165 (175)
T 2gm3_A 147 SAFCVKHAE--CPVMTIKRNA 165 (175)
T ss_dssp HHHHHHHCS--SCEEEEECCG
T ss_pred HHHHHhCCC--CCEEEEcCCc
Confidence 999999998 9999998653
No 9
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.88 E-value=1.3e-22 Score=177.09 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=104.4
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHH
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKW 93 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~ 93 (458)
+++||||+|+|+.|..|++||+.++...++ .|++|||+++... . ++...| +.+.+..++
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~---~--------~~~~~~---------~~~~~~~~~ 60 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGA-RLIVVHAYEPVPD---Y--------LGEPFF---------EEALRRRLE 60 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTC-EEEEEEEECC----------------------------------CHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCC-EEEEEEEecCCCc---c--------ccccch---------HHHHHHHHH
Confidence 689999999999999999999999987777 4999999975311 0 111000 112223344
Q ss_pred HHHHHHHHHHHHhhcCCC-eEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceE
Q 012682 94 KTDRLLLPFRNMCAQRRV-EVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (458)
Q Consensus 94 ~a~~lL~~~~~~~~~~gV-~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~V 172 (458)
.+++.|..+... .|+ +++..+.. |+|+++|+++|++.++|+||||++|++++.++++|| |+.+|+++++ |||
T Consensus 61 ~~~~~l~~~~~~---~g~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs-~~~~vl~~~~--~pV 133 (137)
T 2z08_A 61 RAEGVLEEARAL---TGVPKEDALLLE-GVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGS-QSQRVVAEAP--CPV 133 (137)
T ss_dssp HHHHHHHHHHHH---HCCCGGGEEEEE-SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCH-HHHHHHHHCS--SCE
T ss_pred HHHHHHHHHHHH---cCCCccEEEEEe-cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhcc-HHHHHHhcCC--CCE
Confidence 556666665443 577 77776665 999999999999999999999999999999999996 9999999998 999
Q ss_pred EEEc
Q 012682 173 YGVE 176 (458)
Q Consensus 173 lVV~ 176 (458)
+||+
T Consensus 134 lvv~ 137 (137)
T 2z08_A 134 LLVR 137 (137)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9995
No 10
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.88 E-value=1.2e-22 Score=179.54 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=97.5
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
..+++||||+|+|+.|..|++||+.++...++ .|++|||+++....... .+...|... ..+.+..
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~~~--------~~~~~~~~~------~~~~~~~ 68 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQIGA-RLSLIHVLDNIPMPDTP--------YGTAIPLDT------ETTYDAM 68 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTC-EEEEEEEEC----------------CTTCCCSSS------CCCHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHhhcCC-EEEEEEEEcCccccccc--------cccccCcCH------HHHHHHH
Confidence 46899999999999999999999999987778 49999999874321000 111111110 0112233
Q ss_pred HHHHHHHHHHHHHHhhcCCCe-EEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCc
Q 012682 92 KWKTDRLLLPFRNMCAQRRVE-VEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFC 170 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~-ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C 170 (458)
.+.+++.|..+.+. .|+. ++..+.. |+|+++|+++|++.++|+||||++|++++. +++|| |+.+|+++++ |
T Consensus 69 ~~~~~~~l~~~~~~---~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs-~~~~vl~~~~--~ 140 (150)
T 3tnj_A 69 LDVEKQKLSQIGNT---LGIDPAHRWLVW-GEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGS-TANSVLHYAK--C 140 (150)
T ss_dssp HHHHHHHHHHHHHH---HTCCGGGEEEEE-SCHHHHHHHHHHHTTCSEEEEEEC---------CCC-HHHHHHHHCS--S
T ss_pred HHHHHHHHHHHHHH---cCCCcceEEEec-CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecc-hHHHHHHhCC--C
Confidence 34455555555433 3565 3455545 999999999999999999999999999999 99996 9999999999 9
Q ss_pred eEEEEcCC
Q 012682 171 TVYGVEKG 178 (458)
Q Consensus 171 ~VlVV~kg 178 (458)
||+||+..
T Consensus 141 pVlvv~~~ 148 (150)
T 3tnj_A 141 DVLAVRLR 148 (150)
T ss_dssp EEEEEECC
T ss_pred CEEEEeCC
Confidence 99999864
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.88 E-value=4.2e-22 Score=178.85 Aligned_cols=131 Identities=14% Similarity=0.140 Sum_probs=110.2
Q ss_pred CCCeEEEeecC-CHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 13 PALSVAVAVKG-NRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 13 ~~~~ILVAVDg-S~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
.+++||||+|+ |+.+..|++||+.++...++. |++|||+++.. + . . +..
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~-l~llhV~~~~~----~----------~---------~------~~~ 72 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVP-VYVVHSLPGGG----R----------T---------K------DED 72 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCC-EEEEEEECCST----T----------S---------C------HHH
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCE-EEEEEEEcCCC----c----------c---------c------HHH
Confidence 58999999999 999999999999999877885 99999987531 1 0 0 112
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEE-EecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCc
Q 012682 92 KWKTDRLLLPFRNMCAQRRVEVEVKV-IESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFC 170 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~ve~vv-le~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C 170 (458)
.+.+++.|..+.+.+...|+.++..+ +..|+|+++|+++|++.++||||||++|++++.++|+|| |+.+|+++++ |
T Consensus 73 ~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGS-v~~~vl~~a~--~ 149 (155)
T 3dlo_A 73 IIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGS-VARDVILKAN--K 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCH-HHHHHHHHCS--S
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEecc-HHHHHHHhCC--C
Confidence 34456777777788887888877543 456999999999999999999999999999999999996 9999999999 9
Q ss_pred eEEEEc
Q 012682 171 TVYGVE 176 (458)
Q Consensus 171 ~VlVV~ 176 (458)
||+||+
T Consensus 150 PVLvVr 155 (155)
T 3dlo_A 150 PVICIK 155 (155)
T ss_dssp CEEEEC
T ss_pred CEEEeC
Confidence 999995
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.87 E-value=3.8e-22 Score=174.62 Aligned_cols=138 Identities=11% Similarity=0.066 Sum_probs=102.0
Q ss_pred CCeEEEeecCCHH--hHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 14 ALSVAVAVKGNRK--SRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 14 ~~~ILVAVDgS~~--S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
.++||||+|+|+. |..|++||+.++...++ .|++|||+++...... .+...+ .. .+..
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~~---------~~~~~~------~~----~~~~ 60 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDA-EVHFLTVIPSLPYYAS---------LGMAYT------AE----LPGM 60 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTC-EEEEEEEECC-----------------------------------CH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCC-eEEEEEEecCCccccc---------cccccc------ch----hhhH
Confidence 4799999999999 99999999999987778 4999999987532110 111000 00 0111
Q ss_pred HHHHHHHHHHHHHHhhcCC---CeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCC
Q 012682 92 KWKTDRLLLPFRNMCAQRR---VEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPS 168 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~g---V~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~ 168 (458)
++..++.+..+..++...| +.++..+.. |+|+++|++++++.++||||||++| +++.++|+|| |+.+|+++++
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs-~~~~v~~~~~- 136 (143)
T 3fdx_A 61 DELREGSETQLKEIAKKFSIPEDRMHFHVAE-GSPKDKILALAKSLPADLVIIASHR-PDITTYLLGS-NAAAVVRHAE- 136 (143)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCGGGEEEEEEE-SCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCH-HHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEEe-cChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeecc-HHHHHHHhCC-
Confidence 2233444455555665554 456777766 8999999999999999999999996 8899999996 9999999999
Q ss_pred CceEEEEc
Q 012682 169 FCTVYGVE 176 (458)
Q Consensus 169 ~C~VlVV~ 176 (458)
|||+||+
T Consensus 137 -~pVlvv~ 143 (143)
T 3fdx_A 137 -CSVLVVR 143 (143)
T ss_dssp -SEEEEEC
T ss_pred -CCEEEeC
Confidence 9999996
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.83 E-value=1.2e-20 Score=164.85 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=99.7
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCC-CCCCCCcccCCCCCCCcccccccchHHHHHHHHHHH
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRIT-SVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~-~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
+++||||+|+|+.|..|++||+.++...++ .|++|||+++.. ..+ ...+ .....+.+...
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~~------------~~~~------~~~~~~~~~~~ 62 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDA-KLSIIHVDVNFSDLYT------------GLID------VNMSSMQDRIS 62 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTC-EEEEEEEEECCGGGCC------------CCEE------HHHHHHTTCCC
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCC-EEEEEEEecCchhhhc------------cccc------cchHHHHHHHH
Confidence 689999999999999999999999987777 499999985421 011 1100 01111211122
Q ss_pred HHHHHHHHHHHHHhhcCCCeE-EEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCce
Q 012682 93 WKTDRLLLPFRNMCAQRRVEV-EVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (458)
Q Consensus 93 ~~a~~lL~~~~~~~~~~gV~v-e~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~ 171 (458)
+.+++.|..+ +...|+.+ ...+. .|+|++.|+++|++.++||||||++ ++++.+ | || |+.+|+++++ ||
T Consensus 63 ~~~~~~l~~~---~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~-l-gs-~~~~vl~~~~--~p 132 (141)
T 1jmv_A 63 TETQKALLDL---AESVDYPISEKLSG-SGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK-L-MS-STRQVMNTIK--ID 132 (141)
T ss_dssp CHHHHHHHHH---HHHSSSCCCCEEEE-EECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH-H-HH-HHHHHHTTCC--SE
T ss_pred HHHHHHHHHH---HHHcCCCceEEEEe-cCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh-h-cc-hHHHHHhcCC--CC
Confidence 3344555544 33457776 34444 4999999999999999999999999 998887 4 85 9999999999 99
Q ss_pred EEEEcCC
Q 012682 172 VYGVEKG 178 (458)
Q Consensus 172 VlVV~kg 178 (458)
|+||+.+
T Consensus 133 Vlvv~~~ 139 (141)
T 1jmv_A 133 MLVVPLR 139 (141)
T ss_dssp EEEEECC
T ss_pred EEEeeCC
Confidence 9999865
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.81 E-value=1.3e-19 Score=179.41 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=118.4
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
.+++||||+|+|+.+..|++||+.++...+.. |++|||+++..+. ....+ ..+....+.+...
T Consensus 6 ~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~-l~ll~v~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~ 68 (319)
T 3olq_A 6 KYQNLLVVIDPNQDDQPALRRAVYIVQRNGGR-IKAFLPVYDLSYD-----------MTTLL-----SPDERNAMRKGVI 68 (319)
T ss_dssp CSCEEEEECCTTCSCCHHHHHHHHHHHHHCCE-EEEEEEECCGGGG-----------CTTTS-----CHHHHHHHHHHHH
T ss_pred ccceEEEEECCCcccHHHHHHHHHHHHHcCCe-EEEEEEecccchh-----------hcccc-----ChhhHHHHHHHHH
Confidence 57999999999999999999999999888885 9999998753210 01111 1123344445555
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceE
Q 012682 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (458)
Q Consensus 93 ~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~V 172 (458)
+.+++.|..+...+...|++++..+...|+|.+.|++++.+.++||||||++|++++.++|+|| ++.+|+++++ |||
T Consensus 69 ~~~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs-~~~~vl~~~~--~PV 145 (319)
T 3olq_A 69 NQKTAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTP-LDWQLLRKCP--APV 145 (319)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCH-HHHHHHHHCS--SCE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccc-cHHHHHhcCC--CCE
Confidence 6677788888888878899999988745999999999999999999999999999999999996 9999999999 999
Q ss_pred EEEcCCc
Q 012682 173 YGVEKGK 179 (458)
Q Consensus 173 lVV~kgk 179 (458)
+||+.+.
T Consensus 146 lvv~~~~ 152 (319)
T 3olq_A 146 WMVKDKE 152 (319)
T ss_dssp EEEESSC
T ss_pred EEecCcc
Confidence 9998653
No 15
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.80 E-value=1.2e-19 Score=175.60 Aligned_cols=148 Identities=16% Similarity=0.084 Sum_probs=113.3
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCC-cccccccchHHHHHHHHHHHH
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGN-FIPIEQVRDDVAAAYKQEEKW 93 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~-~vp~~~~~~~~~~~~~~~~~~ 93 (458)
++||||+|+|+.|..|++||+.++...++. |++|||+++..... . +. .+. ..+ ..+ .+..+.+.+...+
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~-l~ll~v~~~~~~~~-~-----~~-~~~~~~~-~~~-~~~~~~~~~~~~~ 70 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAP-LTVLFVVDTRLARI-P-----EL-LDFGALT-VPV-PVLRTELERALAL 70 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCC-EEEEEEEEHHHHTH-H-----HH-C--------CH-HHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCc-EEEEEEeccCCccc-c-----cc-cCchHHH-HHH-HHHHHHHHHHHHH
Confidence 589999999999999999999999877885 99999987531000 0 00 000 000 000 0011112344556
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCC-CccccccccchhHHHhhhCCCCceE
Q 012682 94 KTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQG-IFTWKFKKNNLSSRISICVPSFCTV 172 (458)
Q Consensus 94 ~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs-~~~r~~lGSsVs~~Vlk~Ap~~C~V 172 (458)
.+++.|..+...+...|++++..+.. |+|++.|+++ +.++|+||||++|++ ++.++++|| |+.+|+++++ |||
T Consensus 71 ~~~~~l~~~~~~~~~~g~~~~~~~~~-g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs-~~~~v~~~a~--~PV 144 (268)
T 3ab8_A 71 RGEAVLERVRQSALAAGVAVEAVLEE-GVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGS-TADRVLRASP--VPV 144 (268)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEE-ECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCH-HHHHHHHHCS--SCE
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEec-CCHHHHHHhh--ccCCCEEEEeccCCCccccccccch-hHHHHHHhCC--CCE
Confidence 77888999988888889999888876 9999999999 789999999999999 999999996 9999999999 999
Q ss_pred EEEcCC
Q 012682 173 YGVEKG 178 (458)
Q Consensus 173 lVV~kg 178 (458)
+||+.+
T Consensus 145 lvv~~~ 150 (268)
T 3ab8_A 145 LLAPGE 150 (268)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 999864
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.79 E-value=3.1e-19 Score=175.11 Aligned_cols=137 Identities=9% Similarity=0.029 Sum_probs=104.1
Q ss_pred CCCeEEEeecCCHH-------hHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHH
Q 012682 13 PALSVAVAVKGNRK-------SRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAA 85 (458)
Q Consensus 13 ~~~~ILVAVDgS~~-------S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~ 85 (458)
++++||||+|+|+. |..|++||+.++...++ +|+||||+++.... ...| +.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~-------------~~~~------~~-- 190 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKA-TLHVISAHPSPMLS-------------SADP------TF-- 190 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTC-EEEEEEEEC----------------------------CH--
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCC-eEEEEEEecCcccc-------------ccCc------hh--
Confidence 78999999999998 99999999999988788 49999999864210 0011 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCe-EEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhh
Q 012682 86 AYKQEEKWKTDRLLLPFRNMCAQRRVE-VEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISI 164 (458)
Q Consensus 86 ~~~~~~~~~a~~lL~~~~~~~~~~gV~-ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk 164 (458)
.+.+...+..++.|..+.. +.|+. +...+.. |+|+++|++++++.++||||||++|++++.++|+|| |+.+|++
T Consensus 191 ~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~v~~-g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gs-v~~~vl~ 265 (290)
T 3mt0_A 191 QLSETIEARYREACRTFQA---EYGFSDEQLHIEE-GPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGN-TAEVVLD 265 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHTCCTTTEEEEE-SCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCH-HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH---HcCCCcceEEEec-cCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecch-HHHHHHh
Confidence 2223333444555555433 33664 3445545 999999999999999999999999999999999996 9999999
Q ss_pred hCCCCceEEEEcCC
Q 012682 165 CVPSFCTVYGVEKG 178 (458)
Q Consensus 165 ~Ap~~C~VlVV~kg 178 (458)
+++ |||+||+..
T Consensus 266 ~~~--~pVLvv~~~ 277 (290)
T 3mt0_A 266 TLE--SDVLVLKPD 277 (290)
T ss_dssp TCS--SEEEEECCH
T ss_pred cCC--CCEEEECCC
Confidence 999 999999863
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.79 E-value=6.7e-19 Score=174.28 Aligned_cols=141 Identities=15% Similarity=0.179 Sum_probs=111.9
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
.+++||||+|+|+.+..|++||+.++...++. |++|||+++.. .+.+ . ..++ .+ +.+...
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~-l~ll~v~~~~~-~~~~--------~-~~~~-----~~----~~~~~~ 77 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAELRKIP-LTLVHAVSPEV-ATWL--------E-VPLP-----PG----VLRWQQ 77 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCC-EEEEEECCCCC-CCTT--------C-CCCC-----HH----HHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHhcCCc-EEEEEEecCcc-cccc--------c-CCCC-----ch----hhHHHH
Confidence 58999999999999999999999999877885 99999987431 1101 0 1111 11 223344
Q ss_pred HHHHHHHHHHHHHhhcC-----CCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCC
Q 012682 93 WKTDRLLLPFRNMCAQR-----RVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVP 167 (458)
Q Consensus 93 ~~a~~lL~~~~~~~~~~-----gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap 167 (458)
+.+++.|..+.+.+... |++++..+.. |+|++.|+++++ ++|+||||++|++++.++|+|| ++.+|+++++
T Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs-~~~~vl~~~~ 153 (309)
T 3cis_A 78 DHGRHLIDDALKVVEQASLRAGPPTVHSEIVP-AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGS-VSSGLLRHAH 153 (309)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCSCEEEEEES-SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCH-HHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEEEec-CCHHHHHHHHhc--CCCEEEECCCCCccccccccCc-HHHHHHHhCC
Confidence 55567777777777654 8999888865 999999999997 7999999999999999999996 9999999998
Q ss_pred CCceEEEEcCCc
Q 012682 168 SFCTVYGVEKGK 179 (458)
Q Consensus 168 ~~C~VlVV~kgk 179 (458)
|||+||+.+.
T Consensus 154 --~PVlvv~~~~ 163 (309)
T 3cis_A 154 --CPVVIIHDED 163 (309)
T ss_dssp --SCEEEECTTC
T ss_pred --CCEEEEcCCc
Confidence 9999998653
No 18
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.79 E-value=5.9e-19 Score=153.71 Aligned_cols=131 Identities=12% Similarity=0.026 Sum_probs=98.3
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe-cC-CCCCCCCCcccCCCCCCC-cccccccchHHHHHHHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR-PR-ITSVPTPTSLAIGHPVGN-FIPIEQVRDDVAAAYKQ 89 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~-~~-~~~~~~p~~~~~~~~~g~-~vp~~~~~~~~~~~~~~ 89 (458)
.+++||||+|+|+.|..|++||+.++...++ .|++|||+ +. +.+ + . .+. .+|.. . .+.+
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~-~-~--------~~~~~~~~~---~----~~~~ 64 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGA-ELDILAVLEDVYNLE-R-A--------NVTFGLPFP---P----EIKE 64 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCC-EEEEEEECHHHHHHH-H-H--------HHHHCCCCC---T----HHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCC-eEEEEEEeccccccc-c-c--------ccccCCCCC---h----HHHH
Confidence 5789999999999999999999999987777 49999998 63 100 0 0 000 01100 1 1223
Q ss_pred HHHHHHHHHHHHHHHH--hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCC
Q 012682 90 EEKWKTDRLLLPFRNM--CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVP 167 (458)
Q Consensus 90 ~~~~~a~~lL~~~~~~--~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap 167 (458)
...+.+++.|..+ .. +...| +++..+.. |+|++.|+++|++.++||||||++|+ | |+.+|+++++
T Consensus 65 ~~~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~g~---------s-v~~~vl~~a~ 131 (138)
T 1q77_A 65 ESKKRIERRLREV-WEKLTGSTE-IPGVEYRI-GPLSEEVKKFVEGKGYELVVWACYPS---------A-YLCKVIDGLN 131 (138)
T ss_dssp HHHHHHHHHHHHH-HHHHHSCCC-CCCEEEEC-SCHHHHHHHHHTTSCCSEEEECSCCG---------G-GTHHHHHHSS
T ss_pred HHHHHHHHHHHHH-HHHhhccCC-cceEEEEc-CCHHHHHHHHHHhcCCCEEEEeCCCC---------c-hHHHHHHhCC
Confidence 3445566677777 65 34566 67776655 99999999999999999999999986 4 9999999999
Q ss_pred CCceEEEEc
Q 012682 168 SFCTVYGVE 176 (458)
Q Consensus 168 ~~C~VlVV~ 176 (458)
|||+||+
T Consensus 132 --~PVlvv~ 138 (138)
T 1q77_A 132 --LASLIVK 138 (138)
T ss_dssp --SEEEECC
T ss_pred --CceEeeC
Confidence 9999985
No 19
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.78 E-value=1.9e-19 Score=176.88 Aligned_cols=143 Identities=15% Similarity=0.064 Sum_probs=116.2
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
-+++||||+|+|+.|..|++||+.++...++. |++|||+++..... . ..... ...+.+..+
T Consensus 21 m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~-l~ll~v~~~~~~~~-~--------~~~~~---------~~~~~~~~~ 81 (294)
T 3loq_A 21 QSNAMLLPTDLSENSFKVLEYLGDFKKVGVEE-IGVLFVINLTKLST-V--------SGGID---------IDHYIDEMS 81 (294)
T ss_dssp TTCEEEEECCSCTGGGGGGGGHHHHHHTTCCE-EEEECCEECTTC--------------CCC---------TTHHHHHHH
T ss_pred hhccEEEecCCCHHHHHHHHHHHHHHhhcCCE-EEEEEEecCccccc-c--------ccccc---------HHHHHHHHH
Confidence 37899999999999999999999999887884 99999998753211 0 00110 112334455
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEE-EEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCce
Q 012682 93 WKTDRLLLPFRNMCAQRRVEVEV-KVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (458)
Q Consensus 93 ~~a~~lL~~~~~~~~~~gV~ve~-vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~ 171 (458)
+.+++.|..+.+.+...|++++. .++..|+|.++| ++.+.++|+||||++|++++.++++|| ++.+|+++++ ||
T Consensus 82 ~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs-~~~~vl~~~~--~P 156 (294)
T 3loq_A 82 EKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGS-VSEGVLHDSK--VP 156 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCC-HHHHHHHHCS--SC
T ss_pred HHHHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeecc-HHHHHHhcCC--CC
Confidence 67788888888888889999988 666259999999 999999999999999999999999996 9999999999 99
Q ss_pred EEEEcCCc
Q 012682 172 VYGVEKGK 179 (458)
Q Consensus 172 VlVV~kgk 179 (458)
|+||+.+.
T Consensus 157 Vlvv~~~~ 164 (294)
T 3loq_A 157 VYIFKHDM 164 (294)
T ss_dssp EEEECCCT
T ss_pred EEEecCcc
Confidence 99998754
No 20
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.77 E-value=2.6e-18 Score=170.04 Aligned_cols=136 Identities=14% Similarity=0.167 Sum_probs=104.3
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
..+++||||+|+|+.+..||+||+.++...+.. |++|||+++..... ... ...+...+
T Consensus 169 ~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~-l~ll~v~~~~~~~~----------~~~---------~~~~~~~~-- 226 (309)
T 3cis_A 169 PQQAPVLVGVDGSSASELATAIAFDEASRRNVD-LVALHAWSDVDVSE----------WPG---------IDWPATQS-- 226 (309)
T ss_dssp SCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCC-EEEEEESCSSCCTT----------CSS---------CCHHHHHH--
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCE-EEEEEEeecccccC----------CCc---------ccHHHHHH--
Confidence 457899999999999999999999999877785 99999987642110 000 01112222
Q ss_pred HHHHHHHHHHHHHHhhc--CCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCC
Q 012682 92 KWKTDRLLLPFRNMCAQ--RRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSF 169 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~--~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~ 169 (458)
..++.+..+...+.. .|+.++..+.. |+|+++|+++++ ++||||||++|+++|.++|+|| |+.+|+++++
T Consensus 227 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gs-v~~~vl~~~~-- 298 (309)
T 3cis_A 227 --MAEQVLAERLAGWQERYPNVAITRVVVR-DQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGS-VGETVAQLAR-- 298 (309)
T ss_dssp --HHHHHHHHHHTTHHHHCTTSCEEEEEES-SCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCH-HHHHHHHHCS--
T ss_pred --HHHHHHHHHHHHHHhhCCCCcEEEEEEc-CCHHHHHHHhhC--CCCEEEECCCCCCCccccccCc-HHHHHHhcCC--
Confidence 233334443333322 57888887765 999999999997 8999999999999999999996 9999999999
Q ss_pred ceEEEEcC
Q 012682 170 CTVYGVEK 177 (458)
Q Consensus 170 C~VlVV~k 177 (458)
|||+||+.
T Consensus 299 ~pVlvv~~ 306 (309)
T 3cis_A 299 TPVIVARE 306 (309)
T ss_dssp SCEEEECC
T ss_pred CCEEEeCC
Confidence 99999975
No 21
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.76 E-value=5.4e-18 Score=167.76 Aligned_cols=144 Identities=12% Similarity=0.055 Sum_probs=108.8
Q ss_pred CCCCeEEEeecCCH-------HhHHHHHHHHHHhccC--CCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchH
Q 012682 12 SPALSVAVAVKGNR-------KSRYAVLWALEKFIPE--GINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDD 82 (458)
Q Consensus 12 ~~~~~ILVAVDgS~-------~S~~AL~wAl~~a~~~--g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~ 82 (458)
..+++||||+|+|+ .|..|++||+.++... +.. |+||||+++..... +...|. .
T Consensus 154 ~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~-l~ll~v~~~~~~~~-----------~~~~~~-----~ 216 (319)
T 3olq_A 154 PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPD-VHLLSAYPVAPINI-----------AIELPD-----F 216 (319)
T ss_dssp CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCC-EEEEEEECCCSCSC-----------CTTCTT-----C
T ss_pred ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCe-EEEEEeecCcchhh-----------hccCCc-----c
Confidence 46899999999999 6799999999999876 775 99999998753110 001111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCe-EEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHH
Q 012682 83 VAAAYKQEEKWKTDRLLLPFRNMCAQRRVE-VEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSR 161 (458)
Q Consensus 83 ~~~~~~~~~~~~a~~lL~~~~~~~~~~gV~-ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~ 161 (458)
....+.+...+.+++.|..+. .+.|+. +...+.. |+|+++|++++++.++||||||++|++++.++|+|| |+.+
T Consensus 217 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gs-v~~~ 291 (319)
T 3olq_A 217 DPNLYNNALRGQHLIAMKELR---QKFSIPEEKTHVKE-GLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGN-TAEQ 291 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---HHTTCCGGGEEEEE-SCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHhCCCcccEEEec-CCcHHHHHHHHHHhCCCEEEEeccCccCCccccccH-HHHH
Confidence 123344445555566665554 344553 3444544 999999999999999999999999999999999996 9999
Q ss_pred HhhhCCCCceEEEEcCCc
Q 012682 162 ISICVPSFCTVYGVEKGK 179 (458)
Q Consensus 162 Vlk~Ap~~C~VlVV~kgk 179 (458)
|+++++ |||+||+...
T Consensus 292 vl~~~~--~pVLvv~~~~ 307 (319)
T 3olq_A 292 LIDHIK--CDLLAIKPDG 307 (319)
T ss_dssp HHTTCC--SEEEEECCTT
T ss_pred HHhhCC--CCEEEECCCC
Confidence 999999 9999997643
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.76 E-value=3.9e-18 Score=167.44 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=105.9
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
..+++||||+|+++.+..|++||+.++...+.. |++|||.++. .
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~-l~ll~v~~~~----------------~------------------- 211 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGE-LHIIHVSEDG----------------D------------------- 211 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCE-EEEEEECSSS----------------C-------------------
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCE-EEEEEEccCc----------------h-------------------
Confidence 568999999999999999999999998777774 9999997642 0
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCce
Q 012682 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~ 171 (458)
.++.+..+...+...|++++..+.. |+|+++|++++++.++||||||++|++++.++|+|| |+.+|+++++ ||
T Consensus 212 ---~~~~l~~~~~~l~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs-~~~~vl~~~~--~p 284 (294)
T 3loq_A 212 ---KTADLRVMEEVIGAEGIEVHVHIES-GTPHKAILAKREEINATTIFMGSRGAGSVMTMILGS-TSESVIRRSP--VP 284 (294)
T ss_dssp ---CHHHHHHHHHHHHHTTCCEEEEEEC-SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHC-HHHHHHHHCS--SC
T ss_pred ---HHHHHHHHHHHHHHcCCcEEEEEec-CCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCc-HHHHHHhcCC--CC
Confidence 0223444445555678888887765 899999999999999999999999999999999996 9999999999 99
Q ss_pred EEEEcCC
Q 012682 172 VYGVEKG 178 (458)
Q Consensus 172 VlVV~kg 178 (458)
|+||+.+
T Consensus 285 vLvv~~~ 291 (294)
T 3loq_A 285 VFVCKRG 291 (294)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999875
No 23
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.74 E-value=6.9e-18 Score=165.52 Aligned_cols=124 Identities=12% Similarity=0.057 Sum_probs=105.3
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHH
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK 92 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ 92 (458)
.+++||||+|+|+.+..|++||+.++...+.. |++|||.++. ..
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~-l~ll~v~~~~----------------~~------------------- 49 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGVTQSH-LHLLVCEKRR----------------DH------------------- 49 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHHHCCE-EEEEEECSSS----------------CC-------------------
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHhcCCe-EEEEEeeCcH----------------HH-------------------
Confidence 47999999999999999999999999888884 9999997631 00
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceE
Q 012682 93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV 172 (458)
Q Consensus 93 ~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~V 172 (458)
++.|..+.+.+...|++++..+..+|+|.+.|++++++.++|+||||++|++++.+.++|| ++.+|+++++ |||
T Consensus 50 ---~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs-~~~~vl~~~~--~PV 123 (290)
T 3mt0_A 50 ---SAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTP-DDWKLLRFAP--CPV 123 (290)
T ss_dssp ---HHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCH-HHHHHHHHCS--SCE
T ss_pred ---HHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCH-HHHHHHhcCC--CCE
Confidence 1223333444456789999988767999999999999999999999999999999999996 9999999999 999
Q ss_pred EEEcCC
Q 012682 173 YGVEKG 178 (458)
Q Consensus 173 lVV~kg 178 (458)
+||+.+
T Consensus 124 lvv~~~ 129 (290)
T 3mt0_A 124 LMTKTA 129 (290)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999854
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.67 E-value=2.5e-16 Score=152.15 Aligned_cols=117 Identities=12% Similarity=0.068 Sum_probs=97.0
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
.++++||||+|+|+.+..|++||..++...+.. +++|||.++. +
T Consensus 152 ~~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~-l~ll~v~~~~--------------------------~--------- 195 (268)
T 3ab8_A 152 VELEGALLGYDASESAVRALHALAPLARALGLG-VRVVSVHEDP--------------------------A--------- 195 (268)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHHHHHHTCC-EEEEEECSSH--------------------------H---------
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHhhhcCCCE-EEEEEEcCcH--------------------------H---------
Confidence 368999999999999999999999988777785 9999996431 0
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCce
Q 012682 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCT 171 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~ 171 (458)
..++.+..+...+...|++++..+.. |+|+++|++++++. ||||||+ ++.++|+|| |+.+|+++++ ||
T Consensus 196 --~~~~~l~~~~~~l~~~~~~~~~~~~~-g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs-~~~~vl~~~~--~p 263 (268)
T 3ab8_A 196 --RAEAWALEAEAYLRDHGVEASALVLG-GDAADHLLRLQGPG--DLLALGA----PVRRLVFGS-TAERVIRNAQ--GP 263 (268)
T ss_dssp --HHHHHHHHHHHHHHHTTCCEEEEEEC-SCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCC-HHHHHHHHCS--SC
T ss_pred --HHHHHHHHHHHHHHHcCCceEEEEeC-CChHHHHHHHHHhC--CEEEECC----cccccEecc-HHHHHHhcCC--CC
Confidence 11233445555566678998887765 99999999999988 9999999 678899996 9999999999 99
Q ss_pred EEEEc
Q 012682 172 VYGVE 176 (458)
Q Consensus 172 VlVV~ 176 (458)
|+||+
T Consensus 264 vlvv~ 268 (268)
T 3ab8_A 264 VLTAR 268 (268)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 25
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=92.10 E-value=0.71 Score=47.94 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=65.4
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHH
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEE 91 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~ 91 (458)
.+..+|+||+.|...|..++.++.......+- .++++||.... .|. +
T Consensus 16 ~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~-~v~avhvdhgl--------------rg~---------~--------- 62 (464)
T 3a2k_A 16 SEGAAVIVGVSGGPDSLALLHVFLSLRDEWKL-QVIAAHVDHMF--------------RGR---------E--------- 62 (464)
T ss_dssp SCSSBEEEECCSSHHHHHHHHHHHHHHHTTTC-BCEEEEEECTT--------------CTH---------H---------
T ss_pred CCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCC-eEEEEEEECCC--------------Ccc---------c---------
Confidence 35678999999999999988887775544455 49999996432 010 0
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEEec-------C-CH--------HHHHHHHHHhCCCCEEEEccCC
Q 012682 92 KWKTDRLLLPFRNMCAQRRVEVEVKVIES-------D-DV--------AKAIADEVASCNINKLVIGAQS 145 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~ve~vvle~-------G-dp--------a~aIve~A~e~~aDlIVmGS~g 145 (458)
..+-....+.+|...||++..+-+.. | ++ ...+.++|.+.+++.|++|.|.
T Consensus 63 ---s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 63 ---SEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp ---HHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred ---cHHHHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 01112344567888899887665431 1 11 2456678888999999999874
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=90.34 E-value=2 Score=42.03 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=61.6
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCe-EEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHH
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINL-FKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQE 90 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~-l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~ 90 (458)
.+..+|+||+.|...|..++.++.......|- . ++++||-.... . +.
T Consensus 22 ~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~-~~v~av~vd~g~r---------------~---------~s------- 69 (317)
T 1wy5_A 22 SGERRVLIAFSGGVDSVVLTDVLLKLKNYFSL-KEVALAHFNHMLR---------------E---------SA------- 69 (317)
T ss_dssp SSCCEEEEECCSSHHHHHHHHHHHHSTTTTTC-SEEEEEEEECCSS---------------T---------HH-------
T ss_pred CCCCEEEEEecchHHHHHHHHHHHHHHHHcCC-CEEEEEEEECCCC---------------c---------cc-------
Confidence 45679999999999999888877664433343 5 88999954310 0 00
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEEec-------C-CHH--------HHHHHHHHhCCCCEEEEccCC
Q 012682 91 EKWKTDRLLLPFRNMCAQRRVEVEVKVIES-------D-DVA--------KAIADEVASCNINKLVIGAQS 145 (458)
Q Consensus 91 ~~~~a~~lL~~~~~~~~~~gV~ve~vvle~-------G-dpa--------~aIve~A~e~~aDlIVmGS~g 145 (458)
.+-....+.+|...||++..+-+.. | ++- ..+.+++.+.+++.|++|.|.
T Consensus 70 -----~~~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 70 -----ERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp -----HHHHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred -----HHHHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 0112233456777788876655321 1 111 245677888999999999874
No 27
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=89.35 E-value=6 Score=37.73 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECA 404 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a 404 (458)
..+..++.+...+|......|..+|+|+-.|+++......--.--.+.++.++...+.+...++.=+..++.++.++...
T Consensus 126 ~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~ 205 (305)
T 2efl_A 126 RKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHE 205 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777788999999999999999987554221000012455566666677777777778888888888777
Q ss_pred H
Q 012682 405 R 405 (458)
Q Consensus 405 ~ 405 (458)
+
T Consensus 206 ~ 206 (305)
T 2efl_A 206 Q 206 (305)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=86.03 E-value=4.9 Score=38.35 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECA 404 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a 404 (458)
..+..++...-.+|..++..|..+|+|+-.|+++......--.--...++.++...+.+...++.-+..++.++.++...
T Consensus 119 ~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~ 198 (301)
T 2efk_A 119 RRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRD 198 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667778888999999999999999887654210000001244555555666666667777778888877777
Q ss_pred HH
Q 012682 405 RA 406 (458)
Q Consensus 405 ~~ 406 (458)
|+
T Consensus 199 ~~ 200 (301)
T 2efk_A 199 QA 200 (301)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 29
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=83.66 E-value=5.6 Score=34.35 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEE-EEEEecCCHHHHHHHHHHhCC--CCEEEEccCCCCCccccccccchhHHHhhhCCC
Q 012682 92 KWKTDRLLLPFRNMCAQRRVEVE-VKVIESDDVAKAIADEVASCN--INKLVIGAQSQGIFTWKFKKNNLSSRISICVPS 168 (458)
Q Consensus 92 ~~~a~~lL~~~~~~~~~~gV~ve-~vvle~Gdpa~aIve~A~e~~--aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~ 168 (458)
+..+++.|......+...|+.+. ..+.+ ++|..+|.+.+.+.+ +|-|||-+.-+ .+.++|.- |++++.=+ ..
T Consensus 53 ~~~A~~~l~~sl~aL~~~G~~a~~G~v~d-~~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs~~fh~-DwasrAr~-~g- 127 (138)
T 2iel_A 53 RRRAEEEAAAAKRALEAQGIPVEEAKAGD-ISPLLAIEEELLAHPGAYQGIVLSTLPP-GLSRWLRL-DVHTQAER-FG- 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEE-SSHHHHHHHHHHHSTTSCSEEEEEECCT-TTCHHHHT-THHHHGGG-GS-
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccccCC-CChHHHHHHHHHhcCCCCceEEEEcCCc-hHHHHHhc-cHHHHHHh-cC-
Confidence 34455666666666777899998 77776 999999999999999 99999998754 45666654 78888776 54
Q ss_pred CceEEEE
Q 012682 169 FCTVYGV 175 (458)
Q Consensus 169 ~C~VlVV 175 (458)
.||+=+
T Consensus 128 -vPVlhl 133 (138)
T 2iel_A 128 -LPVIHV 133 (138)
T ss_dssp -SCEEEE
T ss_pred -CCEEEE
Confidence 888754
No 30
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=80.45 E-value=11 Score=39.18 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012682 333 KLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARAS 407 (458)
Q Consensus 333 rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~~ 407 (458)
.+-.+|..+...|..+|+|+-.|+++......-..--.+.++.++...+.+...+++-+..++.++.+++..+.-
T Consensus 147 ~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~ 221 (486)
T 3haj_A 147 KKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQ 221 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677888899999999999998776654210000024567778888888888898999999999998877543
No 31
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=79.91 E-value=13 Score=36.22 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 330 ELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARA 406 (458)
Q Consensus 330 Em~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~ 406 (458)
++.....+|......|..+|+|+-.|+++......--.--.+.++.++...+.+..-+++-+..++.++.++...+.
T Consensus 142 ~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~ 218 (337)
T 2x3v_A 142 PWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTP 218 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444567777888999999999988876643321000012346667777778888888888888888888877744
No 32
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=78.76 E-value=8.1 Score=39.97 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
.+.++|+||+.|...|-.++.|+.+. |. +++.+|+-..
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~----G~-eViavtvd~G 45 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK----GA-VPYAYTANLG 45 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT----TC-EEEEEEEECC
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc----CC-EEEEEEEEcC
Confidence 45689999999999999999999763 55 5999998654
No 33
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=77.35 E-value=16 Score=35.18 Aligned_cols=85 Identities=21% Similarity=0.161 Sum_probs=56.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHh--------------------hhhHHHHHHHH
Q 012682 322 ESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEE--------------------TRLSEIQLLEE 381 (458)
Q Consensus 322 ~~~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~--------------------~k~eea~~~ee 381 (458)
++-..+-.||+|.|.++|++---.-..+.||+.+=+|+...-.-+.||= +.++-.+.-||
T Consensus 101 ~~L~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EE 180 (279)
T 3qwe_A 101 QPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSRE 180 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHH
Confidence 3345677899999999999988888888889888888665433332222 22444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 382 KAIELAKQEKKKYETARREAECARA 406 (458)
Q Consensus 382 ~a~~~ae~EK~k~~aA~eaaE~a~~ 406 (458)
.|+.-|+.--+-+++.+.+|...|.
T Consensus 181 ea~~K~eeAd~~Y~~~V~~a~~~r~ 205 (279)
T 3qwe_A 181 EAQAKAQEAEALYQACVREANARQQ 205 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665555544
No 34
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=75.77 E-value=5.1 Score=41.00 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=31.5
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhcc-CCCCeEEEEEEec
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIP-EGINLFKLLHVRP 53 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~-~g~~~l~LLHV~~ 53 (458)
+..+|+||+.|...|..++.++.+.... .|- .++++||..
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~-~v~avhvdh 52 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGV-ALRAIHVHH 52 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTC-EEEEEEECC
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCCC-eEEEEEEEC
Confidence 4578999999999999888877765543 455 499999954
No 35
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=74.78 E-value=15 Score=35.99 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.9
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
+.+|+|++-|.+.|.-.|..+...+...+-. |.+|||-
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~-i~vv~vD 83 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLP-FPVMHVD 83 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCS-SCEEEEC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCC-EEEEEEE
Confidence 5689999999999999998887766433343 8899984
No 36
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=72.58 E-value=24 Score=29.36 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=20.6
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhHHHH
Q 012682 320 SSESQVDVNFELEKLRIELRHVRGMYAI 347 (458)
Q Consensus 320 ~s~~~~~~eaEm~rLrlELk~t~~mY~~ 347 (458)
.+-..|.+.-||+|||.+--+...+|..
T Consensus 30 ~~~~sDPL~~ELeRLr~~~d~~~K~HE~ 57 (115)
T 3vem_A 30 FPVFNDPFLHELEKLRRESENSKKTFEE 57 (115)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4455688899999999998888776653
No 37
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=70.79 E-value=14 Score=37.37 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=48.4
Q ss_pred HHHHHHHH-HHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 328 NFELEKLR-IELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARA 406 (458)
Q Consensus 328 eaEm~rLr-lELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~ 406 (458)
..++.+.= .+|...+.-|..+|+|+-.|++|..+..+ .+.++.++..-+.+...+.+-+..|..++.++...+.
T Consensus 125 qk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k-----~ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~ 199 (406)
T 4dyl_A 125 QQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASK-----DKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQ 199 (406)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 56667778899999999999998766522 2445666666777777777777888888888776554
No 38
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=70.04 E-value=9.7 Score=37.45 Aligned_cols=83 Identities=17% Similarity=0.110 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHH-------HHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRI-------ELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETA 397 (458)
Q Consensus 325 ~~~eaEm~rLrl-------ELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA 397 (458)
.+++.+|+++.. +|......|..+|+|+-.|+++......--.=-.+.++.++..-+.+...++.-+..++.+
T Consensus 139 K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 218 (350)
T 3aco_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKS 218 (350)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777776653 5677778899999999999887643211000002445666667777777777778888888
Q ss_pred HHHHHHHHHh
Q 012682 398 RREAECARAS 407 (458)
Q Consensus 398 ~eaaE~a~~~ 407 (458)
+.++...+.-
T Consensus 219 v~~~n~~~~~ 228 (350)
T 3aco_A 219 LKELDQGTPQ 228 (350)
T ss_dssp HHHHHTTHHH
T ss_pred HHHHHHHHHH
Confidence 8888777543
No 39
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=70.01 E-value=34 Score=30.81 Aligned_cols=34 Identities=0% Similarity=-0.126 Sum_probs=26.9
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
.+|+|++.|.+.|.-.|..+.+.. .. +.++||-.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~-v~~v~vd~ 78 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PD-IPVILTDT 78 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TT-CEEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CC-CeEEEeeC
Confidence 589999999999998887776642 33 88999864
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.34 E-value=1.2e+02 Score=31.57 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHh
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNE 351 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~E 351 (458)
.+++.||++|+-|+.+.........++
T Consensus 459 ~~~~~~i~~l~~~~~~~~~~l~~~~~~ 485 (597)
T 3oja_B 459 NELRAEVQQLTNEQIQQEQLLQGLHAE 485 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665555544444
No 41
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=67.53 E-value=85 Score=32.53 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 012682 327 VNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECA-- 404 (458)
Q Consensus 327 ~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a-- 404 (458)
..+|+.|.+..-.+...-|..+..| +.|+..+ =+..-+.++.+=+.|++--+.+.+|+.+++++-.+.
T Consensus 14 yq~elarvqkana~aka~Ye~~~ae-~~a~n~~---------i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~A 83 (497)
T 3iox_A 14 YQTELARVQKANADAKAAYEAAVAA-NNAANAA---------LTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLA 83 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555555555444322 2222221 111234444455555555556666666666443332
Q ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC-------------------------CCHHHHHHHhhcc
Q 012682 405 RASAEKEAAQRQEAEMKAKHEAKEKEMLERALNG-------------------------LEWEDMELSIRAL 451 (458)
Q Consensus 405 ~~~ae~Ea~kR~~aE~ka~~e~~ek~k~~~~l~~-------------------------YtieEIe~AT~~f 451 (458)
.=-+++.+++...+++++....-|++|-.|.-.. ||.+....+..++
T Consensus 84 eY~~kl~aYe~~~~~~~k~lae~ek~k~eDGyLs~~~aQ~Lvf~sEpnA~lsi~~~~~~lt~~a~~~~~~~~ 155 (497)
T 3iox_A 84 DYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKS 155 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTSBSSCCCBCEECSCCTTCEEEEEESSEEECHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccchhcccceecCCCCceEEEecCcceecHHHHHHHhhcc
Confidence 2234455566666666666666666666553211 8888888875543
No 42
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=66.70 E-value=15 Score=35.29 Aligned_cols=83 Identities=17% Similarity=0.110 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHH-------HHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLRI-------ELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETA 397 (458)
Q Consensus 325 ~~~eaEm~rLrl-------ELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA 397 (458)
.+++.+|+++.. +|......|..+|+|+-.|+++......--.=-.+.++.++..-+.+...+..-+.+++.+
T Consensus 139 k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 218 (312)
T 3abh_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKS 218 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667766654 4677788999999999999887643321000001223333444444555555556677777
Q ss_pred HHHHHHHHHh
Q 012682 398 RREAECARAS 407 (458)
Q Consensus 398 ~eaaE~a~~~ 407 (458)
+.++...+.-
T Consensus 219 v~~~n~~~~~ 228 (312)
T 3abh_A 219 LKELDQGTPQ 228 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhHHH
Confidence 7777666543
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=66.68 E-value=1.1e+02 Score=35.16 Aligned_cols=14 Identities=0% Similarity=-0.050 Sum_probs=8.0
Q ss_pred HHhhcCCCeEEEEE
Q 012682 104 NMCAQRRVEVEVKV 117 (458)
Q Consensus 104 ~~~~~~gV~ve~vv 117 (458)
+.+.+.||++..+-
T Consensus 475 eeY~~EgI~w~~i~ 488 (1080)
T 2dfs_A 475 EEYMKEQIPWTLID 488 (1080)
T ss_dssp HHHHHHTCCTTCCC
T ss_pred HHHhhcCCcccccc
Confidence 44555688765443
No 44
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=64.82 E-value=14 Score=33.05 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=42.2
Q ss_pred HHHHhhcCCCeEEEEEEecCCHHHHHHHHHH---hCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 102 FRNMCAQRRVEVEVKVIESDDVAKAIADEVA---SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 102 ~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~---e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
....++..||+++..|.--.-..+.+.+|++ ..+++.||.|+-+-+.+-.. |.-..+ +||+-|+
T Consensus 31 a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgv---------vA~~t~--~PVIgVP 97 (173)
T 4grd_A 31 AVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGM---------LAAKTT--VPVLGVP 97 (173)
T ss_dssp HHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHH---------HHHHCC--SCEEEEE
T ss_pred HHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhh---------heecCC--CCEEEEE
Confidence 3344556689988888754555566666654 47899999988775554432 223345 9999997
No 45
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=64.00 E-value=52 Score=29.24 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.0
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
++|+|++.|...|..++.++.+. +. +++.+|+...
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~----~~-~v~~~~~~~~ 38 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKE----FE-EVETVTFHYN 38 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CS-EEEEEEEESS
T ss_pred CCEEEEccCcHHHHHHHHHHHHc----CC-ceEEEEEeCC
Confidence 58999999999999998887663 34 4888998643
No 46
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=62.97 E-value=15 Score=37.42 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=29.3
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
.++|+|++.|...|--++.|+.+. |. +++.+|+-..
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~-eV~av~vd~g 40 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GY-DVIAYLANIG 40 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TE-EEEEEEEESS
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CC-EEEEEEEECC
Confidence 468999999999999999998763 45 4888998643
No 47
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=62.77 E-value=22 Score=35.97 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=28.8
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
++|+|++.|...|--++.|+.+.+ |. .++.+||-.
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~---g~-~V~av~vd~ 35 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY---RA-EVIAFTADI 35 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---TC-EEEEEEEES
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh---CC-cEEEEEEeC
Confidence 479999999999999999997653 44 488999864
No 48
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=62.65 E-value=13 Score=35.00 Aligned_cols=37 Identities=5% Similarity=-0.238 Sum_probs=28.1
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
+.+|+|++-|.+.|.-.|..+.+.... +.. +.+||+-
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~-i~vv~iD 77 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYM-PELLFID 77 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCC-CEEEEEC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCC-eeEEEec
Confidence 458999999999998888877665432 333 7888984
No 49
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=62.57 E-value=25 Score=35.62 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
....+|+|++.|...|.-++.++.. .|. +++.||+..
T Consensus 185 ~~~~kvlvalSGGvDS~vll~ll~~----~G~-~v~av~v~~ 221 (413)
T 2c5s_A 185 GVGGKVMVLLSGGIDSPVAAYLTMK----RGV-SVEAVHFHS 221 (413)
T ss_dssp TTTEEEEEECCSSSHHHHHHHHHHH----BTE-EEEEEEEEC
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHH----cCC-cEEEEEEeC
Confidence 3467999999999999988887765 355 499999964
No 50
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.47 E-value=16 Score=31.43 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHH
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSE 375 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~ee 375 (458)
.++++-|+..||-||..+..-|..+-+|.-..+++.++|+....+-+..+++
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778889999999999999999999999999999998776655544443
No 51
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=61.36 E-value=1.2e+02 Score=31.19 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=37.9
Q ss_pred HHHHHHhHHHHhHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 012682 345 YAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMKAKH 424 (458)
Q Consensus 345 Y~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~~ae~Ea~kR~~aE~ka~~ 424 (458)
|..|..|--.|..-++-++....--....+.|...-++ +++||+..+.++ ++.=|++||. ||++.|.++.+
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a----~~kek~~~~n~~--a~~~~KiAE~---KrK~dE~~aIK 428 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNA----LLKEKENIRNQL--SGINQKIAEE---KRKQDELKATK 428 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH--HHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh--hhhhhHHHHH---HHhhhHHHHHH
Confidence 77777776666666665555444333333333332222 234444444444 4444555553 35556766666
Q ss_pred HHHH
Q 012682 425 EAKE 428 (458)
Q Consensus 425 e~~e 428 (458)
.+-+
T Consensus 429 DAVk 432 (602)
T 1cii_A 429 DAIN 432 (602)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 52
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=59.54 E-value=39 Score=34.80 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=71.8
Q ss_pred eEEEeecCC--HHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHH
Q 012682 16 SVAVAVKGN--RKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKW 93 (458)
Q Consensus 16 ~ILVAVDgS--~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~ 93 (458)
.+||=+-.+ -.--.||..|++.+...+.+ ++.|.|+++... . .+ ... ..
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~-v~~vfi~dp~~~-~----------~~----------~~r-------~~ 88 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVP-VVVVFCLTDEFL-E----------AG----------IRQ-------YE 88 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSC-EEEEEEECTTGG-G----------SC----------HHH-------HH
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCc-EEEEEEeChhhh-c----------cC----------HHH-------HH
Confidence 455555443 23346777777655444555 889999876420 0 11 000 01
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEE
Q 012682 94 KTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVY 173 (458)
Q Consensus 94 ~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~Vl 173 (458)
-..+-|..+.+.+...|+.+. ++. |++.+.|.+++++.+|+.|+.-...- ...+.. -..|.+... |+|.
T Consensus 89 Fl~~sL~~L~~~L~~~G~~L~--v~~-g~~~~~l~~l~~~~~~~~V~~~~~~~-~~~~~~-----~~~v~~~lg--i~~~ 157 (482)
T 2xry_A 89 FMLKGLQELEVSLSRKKIPSF--FLR-GDPGEKISRFVKDYNAGTLVTDFSPL-RIKNQW-----IEKVISGIS--IPFF 157 (482)
T ss_dssp HHHHHHHHHHHHHHHTTCCEE--EEE-SCHHHHHHHHHHHTTCSEEEEECCCS-HHHHHH-----HHHHHHHCC--SCEE
T ss_pred HHHHHHHHHHHHHHHcCCcEE--EEe-CCHHHHHHHHHHHcCCCEEEEecccc-hhHHHH-----HHHHHHHcC--CEEE
Confidence 223445555556666787653 334 99999999999999999999854322 211111 123333333 8887
Q ss_pred EEcCCccc
Q 012682 174 GVEKGKLS 181 (458)
Q Consensus 174 VV~kgk~~ 181 (458)
.+....+.
T Consensus 158 ~~~~~~l~ 165 (482)
T 2xry_A 158 EVDAHNVV 165 (482)
T ss_dssp EECCSSSS
T ss_pred EEeCCEEc
Confidence 77654443
No 53
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=58.83 E-value=24 Score=31.11 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=46.4
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+....++..|++++..+.--.-..+.+.+|+++...+.||.|+-+-+.+... |.-..+ +||+-|+-
T Consensus 17 ~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgv---------va~~t~--~PVIgVP~ 82 (157)
T 2ywx_A 17 KAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGV---------VASLTT--KPVIAVPV 82 (157)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHH---------HHTTCS--SCEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHH---------HHhccC--CCEEEecC
Confidence 3344455678998888876566778889999877668888888766555433 333445 99999875
No 54
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=58.82 E-value=26 Score=31.52 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=43.8
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHH---hCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVA---SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~---e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+....++..||+++..|+--.-..+.+.+|++ +.+++.||.|+-+-..+... |.-..+ +||+-|+-
T Consensus 40 ~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGv---------vAa~T~--~PVIGVPv 108 (181)
T 4b4k_A 40 YACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM---------VAAKTN--LPVIGVPV 108 (181)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH---------HHTTCC--SCEEEEEC
T ss_pred HHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhh---------HHhcCC--CCEEEEec
Confidence 33444556689998888765555666677765 46789999998765554432 233445 89999874
No 55
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=58.44 E-value=1.9e+02 Score=31.99 Aligned_cols=43 Identities=30% Similarity=0.281 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHH
Q 012682 402 ECARASAEKEAAQRQEAEMKAKHEAKEKEMLERALNGLEWEDMELS 447 (458)
Q Consensus 402 E~a~~~ae~Ea~kR~~aE~ka~~e~~ek~k~~~~l~~YtieEIe~A 447 (458)
...|.++++|-+|-+.. |.-|+..-.+++++|-.=||.+|..|
T Consensus 771 ~~~~~~~ele~~k~~~l---a~ie~~kf~~~v~aig~~ti~~ia~A 813 (861)
T 2zuo_A 771 IYARAQLELEVSKAQQL---ANVEAKKFKEMTEALGPGTIRDLAVA 813 (861)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHSCTTHHHHTGGG
T ss_pred HHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHhhChHHHHHHHhc
Confidence 34444555555442211 12233334556666655666666543
No 56
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=57.98 E-value=22 Score=31.91 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=43.8
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHH---hCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVA---SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~---e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
+....++..|++++..|.--.-..+.+.+|++ +.+++.||.|+-+-+.+-.. |.-..+ +||+-|+
T Consensus 30 ~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv---------vA~~t~--~PVIgVP 97 (174)
T 3kuu_A 30 FAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM---------LAAKTL--VPVLGVP 97 (174)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH---------HHHTCS--SCEEEEE
T ss_pred HHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH---------HHhccC--CCEEEee
Confidence 33444556789998888755566677777765 46799888888765554432 333445 9999886
No 57
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=57.28 E-value=27 Score=31.19 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=44.1
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHh---CCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVAS---CNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e---~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+....++..|++++..|.--.-..+.+.+|+++ .+++.||.|+-+-+.+...+ .-..+ +||+-|+-
T Consensus 29 ~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv---------A~~t~--~PVIgVP~ 97 (170)
T 1xmp_A 29 YACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMV---------AAKTN--LPVIGVPV 97 (170)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH---------HTTCC--SCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH---------HhccC--CCEEEeeC
Confidence 334445567899988887545566777777764 56898888887765554333 33445 99998863
No 58
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=57.24 E-value=27 Score=31.07 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=44.1
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHh---CCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVAS---CNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e---~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+....++..|+.++..|.--.-..+.+.+|+++ .+++.||.|+-+-+.+-.. |.-..+ +||+-|+-
T Consensus 23 ~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv---------vA~~t~--~PVIgVP~ 91 (166)
T 3oow_A 23 ECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM---------VAAKTT--LPVLGVPV 91 (166)
T ss_dssp HHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH---------HHHTCS--SCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHH---------HHhccC--CCEEEeec
Confidence 334445567899888887545566777777754 4689999988765554432 333445 99998863
No 59
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=56.96 E-value=67 Score=30.99 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=57.5
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhcc------------------CCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccc
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIP------------------EGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPI 76 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~------------------~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~ 76 (458)
.+|+|+..|.+.|.-.|..+...+.. .+. .+.+||+-... .+|
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~vv~iDtg~-----------------~fp- 114 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQ-RLPTVFIDQEE-----------------TFP- 114 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCC-CEEEEECCCTT-----------------CCH-
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCC-CeeEEEEeCCC-----------------CCH-
Confidence 58999999999999888877664321 123 37888874321 111
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEe---cCCHHHHHHHHHHhC-CCCEEEEccCCCCCccc
Q 012682 77 EQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIE---SDDVAKAIADEVASC-NINKLVIGAQSQGIFTW 151 (458)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~a~~lL~~~~~~~~~~gV~ve~vvle---~Gdpa~aIve~A~e~-~aDlIVmGS~grs~~~r 151 (458)
+. .+++. .++.+.|+++..+... .....+++.++.+.. .++.|++|.+.--...|
T Consensus 115 -----et------------~~fv~---~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds~~r 173 (306)
T 2wsi_A 115 -----TL------------ENFVL---ETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPFGE 173 (306)
T ss_dssp -----HH------------HHHHH---HHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSSSCC
T ss_pred -----HH------------HHHHH---HHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccccccc
Confidence 11 11222 2234456665333211 134566777887774 68999999987554433
No 60
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=56.25 E-value=19 Score=32.11 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=42.8
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHH---HhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEV---ASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A---~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+....|+..|++++..|.--.-..+.+.+|+ ++.+++.||.|+-+-+.+-.. |.-..+ +||+-|+-
T Consensus 24 ~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv---------vA~~t~--~PVIgVP~ 92 (169)
T 3trh_A 24 TAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT---------IAAHTL--KPVIGVPM 92 (169)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH---------HHHTCS--SCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH---------HHhcCC--CCEEEeec
Confidence 3344455678999888865444555566664 457899888888765554432 333455 99999863
No 61
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=55.75 E-value=84 Score=28.43 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=27.8
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
++|+|++.|...|.-++.|+.+.. . +++.||+..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----~-~v~av~~~~ 36 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----D-DVHCITFDY 36 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----S-EEEEEEEES
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----C-CEEEEEEEC
Confidence 689999999999999998887642 3 488899853
No 62
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.49 E-value=84 Score=40.27 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=5.4
Q ss_pred CEEEEccCCC
Q 012682 137 NKLVIGAQSQ 146 (458)
Q Consensus 137 DlIVmGS~gr 146 (458)
.+|.||-.|-
T Consensus 1648 haLLVGvgGS 1657 (3245)
T 3vkg_A 1648 HALLIGVSGG 1657 (3245)
T ss_dssp CEEEEESTTS
T ss_pred CeEEecCCCC
Confidence 4555555553
No 63
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=55.34 E-value=25 Score=31.68 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=44.2
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHh---CCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVAS---CNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e---~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+....|+..|++++..|.--.-..+.+.+|+++ .+++.||.|+-+-+.+-.. |.-..+ +||+-|+-
T Consensus 39 ~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv---------vA~~t~--~PVIgVP~ 107 (182)
T 1u11_A 39 HADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGM---------CAAWTR--LPVLGVPV 107 (182)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH---------HHHHCS--SCEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHH---------HHhccC--CCEEEeeC
Confidence 334445567899988887555666777777764 5689888888765554432 333445 99998863
No 64
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=54.56 E-value=28 Score=30.89 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=43.2
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHH---hCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVA---SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~---e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
+....++..|++++..|.--.-..+.+.+|++ +.+++.||.|+-+-+.+-.. |.-..+ +||+-|+
T Consensus 21 ~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv---------vA~~t~--~PVIgVP 88 (163)
T 3ors_A 21 ESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGM---------VASLTT--LPVIGVP 88 (163)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH---------HHHHCS--SCEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH---------HHhccC--CCEEEee
Confidence 33444556789998888755556667777765 45789888888765554432 333445 9999886
No 65
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=52.66 E-value=30 Score=31.27 Aligned_cols=65 Identities=11% Similarity=0.189 Sum_probs=43.0
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHH---hCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVA---SCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~---e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
+....++..|++++..|.--.-..+.+.+|++ +.+++.||.|+-+-+.+... |.-..+ +||+-|+
T Consensus 31 ~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv---------vA~~t~--~PVIgVP 98 (183)
T 1o4v_A 31 QAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGM---------VASITH--LPVIGVP 98 (183)
T ss_dssp HHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH---------HHHHCS--SCEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHH---------HHhccC--CCEEEee
Confidence 33444556789998888754555666677765 45789888888765554432 333445 9999886
No 66
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=52.32 E-value=61 Score=31.42 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=73.5
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHH
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWK 94 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~ 94 (458)
.+|||+++........+..|.++-..+| -|++++|.+... . +.. .
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~~G--~ltv~~i~p~~~--------------~----------~~l-------~-- 65 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYPKG--SVKLLGLAGNTD--------------K----------ENL-------L-- 65 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTTTC--EEEEEECC---C--------------T----------TCH-------H--
T ss_pred CcEEEecCCchhhhhHHHHHHHhccCce--eEEEEEEccCCC--------------c----------cHH-------H--
Confidence 4799999877788899999988776655 389999964321 0 100 0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCC-----CEEEEccCCCCCccccccccchhHHHhhhCCCC
Q 012682 95 TDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNI-----NKLVIGAQSQGIFTWKFKKNNLSSRISICVPSF 169 (458)
Q Consensus 95 a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~a-----DlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~ 169 (458)
++ +..+++++.++||.+-..++...|+..++...++-++. ..|+||-.....-..-+ . .+...+. ...
T Consensus 66 -~q-l~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y-~-~~i~~~~-~~~-- 138 (294)
T 3g40_A 66 -SQ-LPSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEI-R-EIIRKAS-MYR-- 138 (294)
T ss_dssp -HH-HHHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHH-H-HHHHHHH-HTT--
T ss_pred -HH-HHHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHH-H-HHHHHHH-HhC--
Confidence 11 24456778889999988888888999999998888765 46777765432211111 1 1333332 333
Q ss_pred ceEEEEcCC
Q 012682 170 CTVYGVEKG 178 (458)
Q Consensus 170 C~VlVV~kg 178 (458)
-.|++.+..
T Consensus 139 ~nVlil~~~ 147 (294)
T 3g40_A 139 MGVLLFSKH 147 (294)
T ss_dssp CEEEEEECC
T ss_pred ceEEEEecC
Confidence 678888653
No 67
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=52.07 E-value=67 Score=33.27 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=28.0
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
.+|+|++.|...|.-++.++.+. |. +++.|||-.
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~-~v~av~vd~ 243 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GV-DHLAVFVDH 243 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TC-EEEEEEEEC
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CC-eEEEEEEeC
Confidence 78999999999999888877653 55 599999854
No 68
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=52.01 E-value=21 Score=28.69 Aligned_cols=51 Identities=20% Similarity=0.130 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHhCCCCEEEEccC----C-CCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 122 DVAKAIADEVASCNINKLVIGAQ----S-QGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 122 dpa~aIve~A~e~~aDlIVmGS~----g-rs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
...+.|.+++++++++.||||-. | .+...+... ..+..+-+. + +||+.|..
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~--~f~~~L~~~-~--lpV~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVL--PLVEALRAR-G--VEVELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTH--HHHHHHHHT-T--CEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHH--HHHHHHhcC-C--CCEEEECC
Confidence 34577888899999999999933 1 222222221 245555554 4 89988854
No 69
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=51.91 E-value=70 Score=30.83 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=28.5
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
++|+|++.|...|.-++.++.+.+ |. +++.|||-..
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~---g~-~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAI---GD-RLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHH---GG-GEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHhh---CC-CEEEEEEcCC
Confidence 689999999999998888876643 34 3889998643
No 70
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=51.21 E-value=27 Score=31.32 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=41.9
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHH---HHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADE---VASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~---A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
+....++..|++++..|.--.-..+.+.+| +++.+++.||.|+-+-+.+... |.-..+ +||+-|+
T Consensus 25 ~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv---------vA~~t~--~PVIgVP 92 (174)
T 3lp6_A 25 DAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGM---------VAAATP--LPVIGVP 92 (174)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHH---------HHHHCS--SCEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHH---------HHhccC--CCEEEee
Confidence 334445567899888886544445555555 4567899888888765554432 333445 9999886
No 71
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=48.99 E-value=46 Score=33.17 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=29.2
Q ss_pred CCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEecC
Q 012682 12 SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54 (458)
Q Consensus 12 ~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~ 54 (458)
....+|+|++.|...|.-++.++.+ .|- +++.||+...
T Consensus 7 ~~~~kVlVa~SGGvDSsv~a~lL~~----~G~-~V~~v~~~~~ 44 (376)
T 2hma_A 7 NSKTRVVVGMSGGVDSSVTALLLKE----QGY-DVIGIFMKNW 44 (376)
T ss_dssp GGGSEEEEECCSSHHHHHHHHHHHH----TTC-EEEEEEEECC
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHH----cCC-cEEEEEEECC
Confidence 3457999999999999888877654 255 4899998643
No 72
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=48.87 E-value=34 Score=30.22 Aligned_cols=65 Identities=6% Similarity=0.002 Sum_probs=42.6
Q ss_pred HHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHh---C-CCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 101 PFRNMCAQRRVEVEVKVIESDDVAKAIADEVAS---C-NINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e---~-~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
+....++..|++++..|.--.-..+.+.+|+++ . +++.||.|+-+-+.+-.. |.-..+ +||+-|+
T Consensus 20 ~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv---------vA~~t~--~PVIgVP 88 (159)
T 3rg8_A 20 KIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF---------VDGFVK--GATIACP 88 (159)
T ss_dssp HHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH---------HHHHSS--SCEEECC
T ss_pred HHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH---------HHhccC--CCEEEee
Confidence 334445567899988887545566667777643 2 689999988765554432 333445 9999886
No 73
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=45.73 E-value=82 Score=32.69 Aligned_cols=26 Identities=15% Similarity=0.044 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhhccc
Q 012682 426 AKEKEMLERALNGLEWEDMELSIRALF 452 (458)
Q Consensus 426 ~~ek~k~~~~l~~YtieEIe~AT~~f~ 452 (458)
-.+++-.||+.. |+.-+-..+.++|-
T Consensus 351 ~~~~~~~~~~~n-~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 351 YNSRKSELDAAN-KTLADAIAEIKQFN 376 (551)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHG
T ss_pred HHhhHHHHHhhh-hHHHHHHHhhhhhh
Confidence 333333444433 55555555555553
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.55 E-value=2.7e+02 Score=28.67 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHH
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKV 359 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~ 359 (458)
.+.+++|+..++.++++...--..-.+..-..++++
T Consensus 451 ~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 451 NEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777888887777666555444444444443
No 75
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=45.16 E-value=48 Score=34.65 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=28.4
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
++|+||+.|...|.-++.++.+.+ |. +++.|||-.
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~~---G~-~v~av~vd~ 265 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKAI---GD-QLVCVLVDT 265 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHHH---GG-GEEEEEECC
T ss_pred CeEEEEEecCcCHHHHHHHHHHHh---CC-eEEEEEecc
Confidence 789999999999998888876643 34 399999854
No 76
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=44.36 E-value=85 Score=29.12 Aligned_cols=33 Identities=0% Similarity=-0.131 Sum_probs=25.5
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
.+|+|++.|.+.|.-.|..+.+.. .. |.+||+-
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~-v~vv~id 78 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PD-IPVILTD 78 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TT-CEEEECC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CC-CeEEEec
Confidence 589999999999998887776643 22 7788874
No 77
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=43.55 E-value=22 Score=33.85 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEE--E--cCCcccccccC
Q 012682 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYG--V--EKGKLSSVRPS 186 (458)
Q Consensus 123 pa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlV--V--~kgk~~s~r~a 186 (458)
.+..|.+++++.+.|+|++|....++..+-+ |.-++..+ ..|.-..|.- + ..|++...|+.
T Consensus 100 ~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v-~p~lA~~L--~~~~vt~v~~l~~~~~~~~~~~~R~i 164 (264)
T 1o97_C 100 VGRILTEVIKKEAPDMVFAGVQSSDQAYAST-GISVASYL--NWPHAAVVADLQYKPGDNKAVIRREL 164 (264)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCCTTTCCCCH-HHHHHHHH--TCCEEEEEEEEECCTTCSEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCchhhH-HHHHHHHh--CCCcccceEEEEEecCCCeEEEEEEc
Confidence 4457888888889999999999876554433 32354443 3341122222 2 33556666654
No 78
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=42.78 E-value=32 Score=25.45 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhh
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDL 362 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL 362 (458)
.+.+..+++.+|.||-+.-.-|.-.-.+.|..+|.+..|
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~L 41 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999997665
No 79
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=42.69 E-value=45 Score=31.37 Aligned_cols=61 Identities=16% Similarity=0.058 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceE--EEEcCCcccccccC
Q 012682 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV--YGVEKGKLSSVRPS 186 (458)
Q Consensus 123 pa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~V--lVV~kgk~~s~r~a 186 (458)
.+..|..++++.++|+|++|....++..+-+ |.-++..+ ..|.-..| +-+..|++...|+.
T Consensus 101 ~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v-~p~lA~~L--~~~~vt~v~~l~~~~~~~~v~R~i 163 (252)
T 1efp_B 101 VAKILAAVARAEGTELIIAGKQAIDNDMNAT-GQMLAAIL--GWAQATFASKVEIEGAKAKVTREV 163 (252)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCCCCH-HHHHHHHH--TCEEEEEEEEEEECSSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCchhhH-HHHHHHHh--CCCccccEEEEEEcCCeEEEEEEc
Confidence 4567888888889999999999876554433 22244443 23311111 22334566666653
No 80
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=41.21 E-value=1.3e+02 Score=28.93 Aligned_cols=36 Identities=8% Similarity=-0.010 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVN 360 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~ 360 (458)
.+++.+++.++.+|.+...-+..|..+.-.|++...
T Consensus 66 ~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~ 101 (369)
T 4dk0_A 66 TTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQ 101 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888777777776666666655443
No 81
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=39.72 E-value=46 Score=31.43 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceE--EEEcCCcccccccC
Q 012682 123 VAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV--YGVEKGKLSSVRPS 186 (458)
Q Consensus 123 pa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~V--lVV~kgk~~s~r~a 186 (458)
.+..|.+++++.++|+|++|....++..+-+ |.-++..+ ..|.-..| +-+..|++...|+.
T Consensus 104 ~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v-~p~lA~~L--~~~~vt~v~~l~~~~~~~~v~R~i 166 (255)
T 1efv_B 104 VARVLAKLAEKEKVDLVLLGKQAIDDDCNQT-GQMTAGFL--DWPQGTFASQVTLEGDKLKVEREI 166 (255)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCCCCH-HHHHHHHH--TCCEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccCCchhhH-HHHHHHHh--CCCcccceEEEEEcCCeEEEEEEc
Confidence 4557888888889999999999876554433 32344443 33411112 22345666666654
No 82
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=39.71 E-value=71 Score=33.27 Aligned_cols=133 Identities=11% Similarity=-0.038 Sum_probs=72.6
Q ss_pred CCCeEEEeecCC--HHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHH
Q 012682 13 PALSVAVAVKGN--RKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQE 90 (458)
Q Consensus 13 ~~~~ILVAVDgS--~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~ 90 (458)
..+.+||=.-.+ -.--.||..|++.+...+.+ |+.|.|+++....+ . .| ...
T Consensus 36 ~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~p-Vl~vfildp~~~~~-~--------~~----------~~r------ 89 (506)
T 3umv_A 36 PGGPVVYWMLRDQRLADNWALLHAAGLAAASASP-LAVAFALFPRPFLL-S--------AR----------RRQ------ 89 (506)
T ss_dssp TTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCC-EEEEEECCCTTCGG-G--------CC----------HHH------
T ss_pred CCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCC-EEEEEeccchhhcc-C--------CC----------HHH------
Confidence 344555544333 23446787887766544665 99999987642111 0 11 000
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccc--cccccchhHHHhhhCCC
Q 012682 91 EKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTW--KFKKNNLSSRISICVPS 168 (458)
Q Consensus 91 ~~~~a~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r--~~lGSsVs~~Vlk~Ap~ 168 (458)
..-+.+-|..+..-+...|+.. +++. |+|.+. .+++++.+|+.|+. ...+... ..-- .|...+-... .
T Consensus 90 -~~FL~~sL~dL~~~L~~lG~~L--~v~~-G~p~~v-~~L~~~~~a~~V~~---d~ep~~~~r~rD~-~V~~~l~~~~-~ 159 (506)
T 3umv_A 90 -LGFLLRGLRRLAADAAARHLPF--FLFT-GGPAEI-PALVQRLGASTLVA---DFSPLRPVREALD-AVVGDLRREA-P 159 (506)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCCE--EEES-SCTTHH-HHHHHHTTCSEEEE---CCCCCHHHHHHHH-HHHHHHHHHC-T
T ss_pred -HHHHHHHHHHHHHHHHHcCCce--EEEe-cChHHH-HHHHHhcCCCEEEe---ccChhHHHHHHHH-HHHHHHhhcc-C
Confidence 1122334455555566667764 3444 999999 99999999999997 2233321 1111 1332221111 2
Q ss_pred CceEEEEcCCccc
Q 012682 169 FCTVYGVEKGKLS 181 (458)
Q Consensus 169 ~C~VlVV~kgk~~ 181 (458)
.|+|..+....+.
T Consensus 160 gi~~~~~~~~~l~ 172 (506)
T 3umv_A 160 GVAVHQVDAHNVV 172 (506)
T ss_dssp TSEEEEECCSCSS
T ss_pred CeEEEEeCCcEEE
Confidence 3888887665543
No 83
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=39.00 E-value=17 Score=34.60 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhh----hhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 331 LEKLRIELRHVRGMYAIAQNEANDASRKVNDL----NKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARA 406 (458)
Q Consensus 331 m~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL----~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~ 406 (458)
+...-.+|..+...|..+|+|.-.|+.+.... +.. .+.++.++...+.+...+++-+..++.++.++...+.
T Consensus 130 ~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s----~k~~~K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~ 205 (290)
T 3i2w_A 130 WAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLS----PDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNS 205 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCC------------------------CTTSSTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33344578888899999999987777654321 100 0112222223333333444445556666655555543
No 84
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=38.80 E-value=1.3e+02 Score=25.09 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 012682 324 QVDVNFELEKLRIELRHVRG 343 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~ 343 (458)
..+|+.+|..|-.||++.+-
T Consensus 4 a~~V~s~l~~LEaeyq~L~~ 23 (119)
T 2avr_X 4 AASLVGELQALDAEYQNLAN 23 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999888754
No 85
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=36.74 E-value=64 Score=28.86 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=26.9
Q ss_pred CCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 14 ALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 14 ~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
.++|+|++.|...|..++.++.+ .|. .++.+||..
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~----~g~-~v~~~~v~~ 40 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKK----LGY-NPHLITINF 40 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHH----TTE-EEEEEEEEC
T ss_pred CCeEEEEEECcHHHHHHHHHHHH----cCC-CeEEEEEeC
Confidence 36899999999999888866543 344 488999864
No 86
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=36.67 E-value=99 Score=32.33 Aligned_cols=77 Identities=9% Similarity=0.046 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 97 RLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 97 ~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
+-|..+.+.+...|+.+.. +. |++.+.|.+++++.+++.|+.-.. ..+..+..-. .|. .+++... |+|..+.
T Consensus 89 ~sL~~L~~~L~~~G~~L~v--~~-g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~~rd~-~v~-~~~~~~g--i~~~~~~ 160 (543)
T 2wq7_A 89 QTLEDLDNQLRKLNSRLFV--VR-GKPAEVFPRIFKSWRVEMLTFETD-IEPYSVTRDA-AVQ-KLAKAEG--VRVETHC 160 (543)
T ss_dssp HHHHHHHHHHHHTTCCCEE--EE-SCHHHHHHHHHHHTTEEEEEEECC-CSHHHHHHHH-HHH-HHHHHHT--CEEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEE--Ee-CCHHHHHHHHHHHcCCCEEEEecC-cCHHHHHHHH-HHH-HHHHHcC--CEEEEec
Confidence 4445555556667876533 34 999999999999999999887543 2233322212 132 2333333 8888777
Q ss_pred CCccc
Q 012682 177 KGKLS 181 (458)
Q Consensus 177 kgk~~ 181 (458)
...+.
T Consensus 161 ~~~l~ 165 (543)
T 2wq7_A 161 SHTIY 165 (543)
T ss_dssp CSSSS
T ss_pred CCEEE
Confidence 66443
No 87
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=36.63 E-value=1.3e+02 Score=29.95 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=27.5
Q ss_pred CCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 13 ~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
...+|+|++.|...|.-++.++.+ .|- +++.||+..
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~----~G~-~V~~v~~~~ 51 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ----QGY-QVEGLFMKN 51 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT----TCC-EEEEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH----cCC-eEEEEEEEc
Confidence 467999999999999888776644 355 489999863
No 88
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=36.27 E-value=1.1e+02 Score=30.68 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
.+-|..+.+.+...|+.+. ++. |++.+.|.+++++.+++.|+.-.. .....+... ..|.+... |+|..+
T Consensus 51 ~~sL~~l~~~L~~~g~~l~--~~~-g~~~~~l~~l~~~~~~~~v~~~~~-~~~~~~~rd-----~~v~~~l~--i~~~~~ 119 (420)
T 2j07_A 51 LENVRALREAYRARGGALW--VLE-GLPWEKVPEAARRLKAKAVYALTS-HTPYGRYRD-----GRVREALP--VPLHLL 119 (420)
T ss_dssp HHHHHHHHHHHHHTTCCEE--EEE-SCHHHHHHHHHHHTTCSEEEEECC-CSHHHHHHH-----HHHHHHCS--SCEEEE
T ss_pred HHHHHHHHHHHHHCCCeEE--EEe-CCHHHHHHHHHHHcCCCEEEEecc-cChhHHHHH-----HHHHHHcC--CeEEEe
Confidence 3445555556666787653 334 999999999999999999887433 222222222 23333222 788877
Q ss_pred cCCccc
Q 012682 176 EKGKLS 181 (458)
Q Consensus 176 ~kgk~~ 181 (458)
....+.
T Consensus 120 ~~~~l~ 125 (420)
T 2j07_A 120 PAPHLL 125 (420)
T ss_dssp CCCCSS
T ss_pred CCCEEE
Confidence 665543
No 89
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=36.25 E-value=1.2e+02 Score=31.41 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=28.5
Q ss_pred CeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 15 LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 15 ~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
++|+|++.|...|--++.++.+.+ |. +++.|||-.
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a~---G~-~v~av~v~~ 262 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRAI---GK-NLTCVFVDN 262 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---GG-GEEEEEEEC
T ss_pred cceEEEecCCCCHHHHHHHHHHHh---CC-CEEEEEEeC
Confidence 699999999999999988887643 34 388999864
No 90
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=35.87 E-value=1.3e+02 Score=30.55 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=28.9
Q ss_pred cccCCCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEec
Q 012682 6 IVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRP 53 (458)
Q Consensus 6 ~~~~~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~ 53 (458)
|----|--.++|+|++.|.-.|--++.|+.+. |. +++.||+.-
T Consensus 6 ~~~~~~~~~~KVVVA~SGGlDSSv~a~~Lke~----G~-eViavt~d~ 48 (421)
T 1vl2_A 6 IHHHHHHMKEKVVLAYSGGLDTSVILKWLCEK----GF-DVIAYVANV 48 (421)
T ss_dssp --------CCEEEEECCSSHHHHHHHHHHHHT----TC-EEEEEEEES
T ss_pred cchhhccccCCEEEEeCCcHHHHHHHHHHHHC----CC-eEEEEEEEc
Confidence 33334445788999999999999999998663 55 488888853
No 91
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=33.89 E-value=1.4e+02 Score=29.39 Aligned_cols=117 Identities=9% Similarity=0.183 Sum_probs=64.6
Q ss_pred HHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012682 30 AVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQR 109 (458)
Q Consensus 30 AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~~~~~ 109 (458)
.+.|-++.+...|+. .+-+||+..+. .. + +.+.+....|..+...|.+.
T Consensus 111 l~~~sve~a~~~GAD-AVk~lv~~g~d--------------~~---------~-------e~~~~q~~~l~rv~~ec~~~ 159 (332)
T 3iv3_A 111 LVDWSIKRLKEAGAD-AVKFLLYYDVD--------------GD---------P-------QVNVQKQAYIERIGSECQAE 159 (332)
T ss_dssp CTTCCHHHHHHTTCS-EEEEEEEECTT--------------SC---------H-------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHcCCC-EEEEEEEcCCC--------------ch---------H-------HHHHHHHHHHHHHHHHHHHc
Confidence 455777777777775 77777764321 00 1 12233456777788889999
Q ss_pred CCeEEEEEEe-c---CCH---------HHHHHHHH-----HhCCCCEEEEccCCCCCcccccc-c------cch---hHH
Q 012682 110 RVEVEVKVIE-S---DDV---------AKAIADEV-----ASCNINKLVIGAQSQGIFTWKFK-K------NNL---SSR 161 (458)
Q Consensus 110 gV~ve~vvle-~---Gdp---------a~aIve~A-----~e~~aDlIVmGS~grs~~~r~~l-G------SsV---s~~ 161 (458)
|+++-..++- . ++. .+.|...+ .+.++|++=+--.|--.|..-|- | ... -..
T Consensus 160 GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~ 239 (332)
T 3iv3_A 160 DIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFRE 239 (332)
T ss_dssp TCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHH
T ss_pred CCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHH
Confidence 9987554432 1 121 22244444 35599999887766432111110 0 001 134
Q ss_pred HhhhCCCCceEEEEcCCc
Q 012682 162 ISICVPSFCTVYGVEKGK 179 (458)
Q Consensus 162 Vlk~Ap~~C~VlVV~kgk 179 (458)
|+..+| .||+|++.|.
T Consensus 240 ~~~a~~--~P~v~lsgG~ 255 (332)
T 3iv3_A 240 QEASTD--LPYIYLSAGV 255 (332)
T ss_dssp HHHTCS--SCEEEECTTC
T ss_pred HHhcCC--CCEEEECCCC
Confidence 455555 8999888773
No 92
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=33.79 E-value=15 Score=31.85 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHhCCCCEEEEccC----CC-CCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 121 DDVAKAIADEVASCNINKLVIGAQ----SQ-GIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 121 Gdpa~aIve~A~e~~aDlIVmGS~----gr-s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
....+.|.+++++++++.||||-. |. +.-.....+ ++..+.+..+ +||+.|..
T Consensus 41 ~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~--f~~~L~~~~~--lpV~~vDE 98 (150)
T 1vhx_A 41 DYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQT--FAKVLETTYN--VPVVLWDE 98 (150)
T ss_dssp BCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHH--HHHHHHHHHC--SCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHH--HHHHHHHhhC--CCEEEecC
Confidence 346789999999999999999943 11 111111122 3444544444 89998865
No 93
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=33.29 E-value=21 Score=29.42 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=19.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhHH
Q 012682 321 SESQVDVNFELEKLRIELRHVRGMY 345 (458)
Q Consensus 321 s~~~~~~eaEm~rLrlELk~t~~mY 345 (458)
..+++++.+|+-||++|-|+....-
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999988864433
No 94
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=33.28 E-value=36 Score=25.32 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhh
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDL 362 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL 362 (458)
.+.+..+++.+|.||-+.-.-|.-.-.+.|..+|.+..|
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~L 41 (64)
T 2c0s_A 3 VTKLNDRIEAKKKELIYLVEKYGFTHHKVISFSQELDRL 41 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999997665
No 95
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=32.69 E-value=96 Score=29.95 Aligned_cols=72 Identities=17% Similarity=0.079 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEE-ccCCCCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVI-GAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVm-GS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+..+...+...|+++..........+..++..+...++|+||+ |-- |.+.. |+..+++ .+..+|+.+|+-
T Consensus 44 ~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGD--GTv~~------v~~~l~~-~~~~~pl~iIP~ 114 (337)
T 2qv7_A 44 LPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGD--GTLNE------VVNGIAE-KPNRPKLGVIPM 114 (337)
T ss_dssp HHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECH--HHHHH------HHHHHTT-CSSCCEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCc--hHHHH------HHHHHHh-CCCCCcEEEecC
Confidence 3444555666777766555443334555555555567886654 433 22221 4444432 123488999988
Q ss_pred Cc
Q 012682 178 GK 179 (458)
Q Consensus 178 gk 179 (458)
|.
T Consensus 115 GT 116 (337)
T 2qv7_A 115 GT 116 (337)
T ss_dssp SS
T ss_pred Cc
Confidence 74
No 96
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=32.52 E-value=52 Score=32.19 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=35.8
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC---CCCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS---QGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~g---rs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
...||+|..+. + +-++ .+.. .+|+++||+.+ -|++..+ .|+..-.-+.++.. .||||+..-
T Consensus 169 ~~~gI~vtli~-D-sa~~-~~m~-----~vd~VivGAd~i~~nG~v~nk-iGT~~iAl~Ak~~~--vP~~V~a~~ 232 (315)
T 3ecs_A 169 CHLNVPVTVVL-D-AAVG-YIME-----KADLVIVGAEGVVENGGIINK-IGTNQMAVCAKAQN--KPFYVVAES 232 (315)
T ss_dssp HTTTCCEEEEC-G-GGHH-HHGG-----GCSEEEEECSEECTTSCEEEE-TTHHHHHHHHHHTT--CCEEEECCG
T ss_pred HHcCCCEEEEe-h-hHHH-HHHH-----hCCEEEECceEEecCCCeeeh-hhhHHHHHHHHHhC--CCEEEEecc
Confidence 35789874433 2 3333 3332 69999999996 3445444 36422223344443 999999764
No 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.11 E-value=3.8e+02 Score=34.55 Aligned_cols=9 Identities=11% Similarity=-0.049 Sum_probs=3.9
Q ss_pred CCeEEEeec
Q 012682 14 ALSVAVAVK 22 (458)
Q Consensus 14 ~~~ILVAVD 22 (458)
++++++=||
T Consensus 1373 Gk~~VlFiD 1381 (3245)
T 3vkg_A 1373 GKWLVVFCD 1381 (3245)
T ss_dssp TCEEEEEET
T ss_pred CceEEEEec
Confidence 344444333
No 98
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=31.01 E-value=3e+02 Score=24.96 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhh
Q 012682 323 SQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEET 371 (458)
Q Consensus 323 ~~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~ 371 (458)
+.++|..||+++---.+| .|+.||.|+...-.||..
T Consensus 9 ~~~~v~~~i~~m~~fI~q-------------EA~eKA~EI~~kAeeE~~ 44 (233)
T 4efa_E 9 TPNQVNDELNKMQAFIRK-------------EAEEKAKEIQLKADQEYE 44 (233)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 347888888888877777 478888888766555543
No 99
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=29.86 E-value=2.6e+02 Score=26.34 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 99 LLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 99 L~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
+..+...|...|+.+- ++-.++.+ ++.|.+.++|+|.++.+....|.- +-+....+++..|..+||+. -|
T Consensus 151 l~~l~~~a~~lGl~~l---vev~t~ee--~~~A~~~Gad~IGv~~r~l~~~~~---dl~~~~~l~~~v~~~~pvVa--eg 220 (272)
T 3qja_A 151 LVSMLDRTESLGMTAL---VEVHTEQE--ADRALKAGAKVIGVNARDLMTLDV---DRDCFARIAPGLPSSVIRIA--ES 220 (272)
T ss_dssp HHHHHHHHHHTTCEEE---EEESSHHH--HHHHHHHTCSEEEEESBCTTTCCB---CTTHHHHHGGGSCTTSEEEE--ES
T ss_pred HHHHHHHHHHCCCcEE---EEcCCHHH--HHHHHHCCCCEEEECCCccccccc---CHHHHHHHHHhCcccCEEEE--EC
Confidence 3444556666787653 23356655 344556799999999665444331 22355677777764466554 45
Q ss_pred ccc
Q 012682 179 KLS 181 (458)
Q Consensus 179 k~~ 181 (458)
.|.
T Consensus 221 GI~ 223 (272)
T 3qja_A 221 GVR 223 (272)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 100
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=29.35 E-value=4.7e+02 Score=26.64 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhHH
Q 012682 323 SQVDVNFELEKLRIELRHVRGMY 345 (458)
Q Consensus 323 ~~~~~eaEm~rLrlELk~t~~mY 345 (458)
+.++|..+|..|+..|+......
T Consensus 293 ~~~~l~~~~~~L~~~l~~v~~~l 315 (483)
T 2j1d_G 293 NMTELDKEISTLRSGLKAVETEL 315 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888887766554433
No 101
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=29.13 E-value=2.8e+02 Score=23.97 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=39.9
Q ss_pred HHHHHHhHHHHHHHhHHHHhHHHHhhhhhhhhHhhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012682 337 ELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSE----------IQLLEEKAIELAKQEKKKYETARREAECARA 406 (458)
Q Consensus 337 ELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k~EE~~k~ee----------a~~~ee~a~~~ae~EK~k~~aA~eaaE~a~~ 406 (458)
|-+-.|+.|..|-.-.-+|++|+..|+..--+-+.||.+ ++..-+.+..-+-.-|.+...|..|+|.|..
T Consensus 56 eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A~~~a~~ 135 (158)
T 3tul_A 56 EAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGT 135 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445567778877777777888877776654333444432 3333334444444444555555555554444
Q ss_pred hH
Q 012682 407 SA 408 (458)
Q Consensus 407 ~a 408 (458)
.|
T Consensus 136 ~a 137 (158)
T 3tul_A 136 DA 137 (158)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 102
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=28.78 E-value=1.8e+02 Score=27.32 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhC-CCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEEc
Q 012682 98 LLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASC-NINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVE 176 (458)
Q Consensus 98 lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~-~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~ 176 (458)
-+..+...|...|..+-..+ .+..+ ++.|.+. ++|+|-+-.++...|.--+ .++..+++..| -.++||.
T Consensus 138 ~l~~l~~~a~~lGl~~lvEv---~~~eE--~~~A~~l~g~~iIGinnr~l~t~~~d~---~~~~~l~~~ip--~~~~vIa 207 (251)
T 1i4n_A 138 QIKEIYEAAEELGMDSLVEV---HSRED--LEKVFSVIRPKIIGINTRDLDTFEIKK---NVLWELLPLVP--DDTVVVA 207 (251)
T ss_dssp HHHHHHHHHHTTTCEEEEEE---CSHHH--HHHHHTTCCCSEEEEECBCTTTCCBCT---THHHHHGGGSC--TTSEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEe---CCHHH--HHHHHhcCCCCEEEEeCcccccCCCCH---HHHHHHHHhCC--CCCEEEE
Confidence 35555666777787653333 56666 5667778 9999888887766654222 25678888887 3466777
Q ss_pred CCcccc
Q 012682 177 KGKLSS 182 (458)
Q Consensus 177 kgk~~s 182 (458)
.|.+.+
T Consensus 208 EsGI~t 213 (251)
T 1i4n_A 208 ESGIKD 213 (251)
T ss_dssp ESCCCC
T ss_pred eCCCCC
Confidence 877764
No 103
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=28.46 E-value=97 Score=27.67 Aligned_cols=49 Identities=14% Similarity=0.013 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ 146 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr 146 (458)
..++..+.+.+...|.+++.+-+.+++....+.+...+ +|.||+++.-.
T Consensus 33 ~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~~P~y 81 (204)
T 2amj_A 33 DTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQMPGW 81 (204)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHH--CSEEEEEEECB
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHh--CCEEEEECCcc
Confidence 34444555555556888887777656656677776665 79999999864
No 104
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.45 E-value=4.5e+02 Score=26.15 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHH-HHHhCCCCEEEEcc
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIAD-EVASCNINKLVIGA 143 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve-~A~e~~aDlIVmGS 143 (458)
++++..|.+. .||+++.+. . ++....|.. .+.....|+++++.
T Consensus 35 ~~~i~~Fe~~---~gI~V~~~~-~-~~~~~kl~~~~asg~~PDv~~~~~ 78 (471)
T 3mq9_A 35 AEVGKKFEKD---TGIKVTVEH-P-DKLEEKFPQVAATGDGPDIIFWAH 78 (471)
T ss_dssp HHHHHHHHHH---HCCCEEEEC-C-TTHHHHHHHHHTTTCSCSEEEEET
T ss_pred HHHHHHHhhC---cCCEEEEEe-c-hHHHHHHHHHHhCCCCCeEEEECC
Confidence 3444444432 356665543 2 444444433 33334467766653
No 105
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.38 E-value=2.2e+02 Score=32.77 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 012682 328 NFELEKLRIELRHVRGMYAIAQN 350 (458)
Q Consensus 328 eaEm~rLrlELk~t~~mY~~Ac~ 350 (458)
+.||+.|+.||+++..-.....+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~ 878 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEA 878 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444433
No 106
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=28.29 E-value=96 Score=32.52 Aligned_cols=45 Identities=7% Similarity=0.115 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccC
Q 012682 97 RLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQ 144 (458)
Q Consensus 97 ~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~ 144 (458)
+-|..+..-+...|+.. +++. |+|.+.|.+++++.+|+.|+.-..
T Consensus 68 ~sL~~L~~~L~~~G~~L--~v~~-G~~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 68 ESLKDLDSSLKKLGSRL--LVFK-GEPGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp HHHHHHHHHHHHTTCCC--EEEE-SCHHHHHHHHHTTSCEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCce--EEEE-CCHHHHHHHHHHHcCCCEEEEecc
Confidence 34455555556667654 3334 999999999999999999988543
No 107
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=28.02 E-value=95 Score=26.82 Aligned_cols=65 Identities=9% Similarity=0.005 Sum_probs=38.8
Q ss_pred hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 106 ~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
+...|.++ +.+....|.+.|++.+.+.++|+|++.+..-..+. .+ . .+...+-+..+..++|+|=
T Consensus 42 l~~~G~eV--i~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~-~~-~-~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 42 LRDAGFEV--VYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLH-LM-K-RLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp HHHTTCEE--ECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHH-HH-H-HHHHHHHHTTCTTSCEEEE
T ss_pred HHHCCCEE--EECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHH-HH-H-HHHHHHHhcCCCCCEEEEe
Confidence 44567654 33333468999999999999999999876433222 22 1 1434443332223777664
No 108
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.74 E-value=42 Score=26.99 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC
Q 012682 97 RLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ 146 (458)
Q Consensus 97 ~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr 146 (458)
+-|.+|+++....|..+.++--. ....+.|-++++++++..+|+--...
T Consensus 13 etlrkfkdiikkngfkvrtvrsp-qelkdsieelvkkynativvvvvddk 61 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTVRSP-QELKDSIEELVKKYNATIVVVVVDDK 61 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSH-HHHHHHHHHHTTCCCCEEEEEECSSH
T ss_pred HHHHHHHHHHHhcCceEEEecCH-HHHHHHHHHHHHHhCCeEEEEEEccH
Confidence 44567777788889888776532 45677888899999998888766554
No 109
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=27.62 E-value=81 Score=30.45 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=40.9
Q ss_pred hhHHHHHHHHH-------HHHHHHHhHHHHHHHhHHHHhHHHHhh----hhhhhhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012682 325 VDVNFELEKLR-------IELRHVRGMYAIAQNEANDASRKVNDL----NKCKLEEETRLSEIQLLEEKAIELAKQEKKK 393 (458)
Q Consensus 325 ~~~eaEm~rLr-------lELk~t~~mY~~Ac~Ea~~Ak~k~~eL----~~~k~EE~~k~eea~~~ee~a~~~ae~EK~k 393 (458)
..++.+|+++. .+|......|..+|+|.=.|+.+.... +.. -.+ ++.++.+-+.+...+++-+..
T Consensus 130 K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~~~~d~~~s-~ke---~~K~~~k~~k~~~~~~~a~~~ 205 (320)
T 3m3w_A 130 RAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMS-QEQ---LRKLQERVGRCTKEAEKMKTQ 205 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCC----C---CSSSSSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-HHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 55556666555 356667789999999966665432111 000 011 112222222333444455666
Q ss_pred HHHHHHHHHHHHHh
Q 012682 394 YETARREAECARAS 407 (458)
Q Consensus 394 ~~aA~eaaE~a~~~ 407 (458)
++.++..++..+.-
T Consensus 206 Y~~~l~~~n~~~~~ 219 (320)
T 3m3w_A 206 YEQTLAELNRYTPR 219 (320)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHH
Confidence 66666666665543
No 110
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=27.04 E-value=1.7e+02 Score=29.86 Aligned_cols=78 Identities=9% Similarity=0.029 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
.+-|..+.+.+...|+.+. ++. |++.+.|.+++++.+++.|+.-.. .....+...- .|...+ +... |+|..+
T Consensus 64 ~~sL~~L~~~L~~~G~~L~--v~~-g~~~~~l~~l~~~~~~~~V~~~~~-~~~~~~~rd~-~v~~~l-~~~g--i~~~~~ 135 (489)
T 1np7_A 64 QQSVQNLAESLQKVGNKLL--VTT-GLPEQVIPQIAKQINAKTIYYHRE-VTQEELDVER-NLVKQL-TILG--IEAKGY 135 (489)
T ss_dssp HHHHHHHHHHHHHTTCCEE--EEE-SCHHHHHHHHHHHTTEEEEEEECC-CSHHHHHHHH-HHHHHH-HHHT--CEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEE--EEE-CCHHHHHHHHHHHcCCCEEEEecc-cCHHHHHHHH-HHHHHH-HhcC--CeEEEe
Confidence 3445555556666787653 334 999999999999999998887543 2333322222 143333 2223 788777
Q ss_pred cCCccc
Q 012682 176 EKGKLS 181 (458)
Q Consensus 176 ~kgk~~ 181 (458)
....+.
T Consensus 136 ~~~~l~ 141 (489)
T 1np7_A 136 WGSTLC 141 (489)
T ss_dssp CCSSSS
T ss_pred cCCeee
Confidence 665543
No 111
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=25.78 E-value=77 Score=28.98 Aligned_cols=87 Identities=7% Similarity=-0.062 Sum_probs=53.8
Q ss_pred CCeEEEeecC-----CHHhHHHHHHHHHHhccCCCCeEEEEEEecCCCCCCCCCcccCCCCCCCcccccccchHHHHHHH
Q 012682 14 ALSVAVAVKG-----NRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYK 88 (458)
Q Consensus 14 ~~~ILVAVDg-----S~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~~~p~~~~~~~~~g~~vp~~~~~~~~~~~~~ 88 (458)
++.|+|=++- .+.+..+|..|..++...|.. +++|-+=+.. ...
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~-v~av~~G~~~---------------~~~--------------- 51 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQ-LEAVVAGTGL---------------KEI--------------- 51 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCC-EEEEEEESCC---------------TTT---------------
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCe-EEEEEECCCH---------------HHH---------------
Confidence 4568887774 467999999998877655664 7776553210 000
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEEEEEec-----CC---HHHHHHHHHHhCCCCEEEEccCCC
Q 012682 89 QEEKWKTDRLLLPFRNMCAQRRVEVEVKVIES-----DD---VAKAIADEVASCNINKLVIGAQSQ 146 (458)
Q Consensus 89 ~~~~~~a~~lL~~~~~~~~~~gV~ve~vvle~-----Gd---pa~aIve~A~e~~aDlIVmGS~gr 146 (458)
++++ ...|+.--.+ +++ -+ .+..|.+++++++.|+|++|+...
T Consensus 52 ------~~~~--------~~~Gad~v~~-v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~ 102 (217)
T 3ih5_A 52 ------EKQI--------LPYGVDKLHV-FDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATVI 102 (217)
T ss_dssp ------HHHH--------GGGTCSEEEE-EECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSHH
T ss_pred ------HHHH--------HhcCCCEEEE-ecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 0111 1235442222 221 12 567889999999999999998653
No 112
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=25.78 E-value=3.5e+02 Score=31.06 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhhhhh
Q 012682 324 QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCK 366 (458)
Q Consensus 324 ~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~~~k 366 (458)
...++.|++.|+.+|....+.....-.+.-..+++..+|....
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766665555554444455555554433
No 113
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=25.60 E-value=1.6e+02 Score=27.96 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHH
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKV 359 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~ 359 (458)
.+++++++.++.+|.+...-+..|..+.-.|++..
T Consensus 65 ~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~ 99 (341)
T 3fpp_A 65 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTY 99 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777887777777666666665555555443
No 114
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.60 E-value=58 Score=34.52 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=24.8
Q ss_pred eEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEE
Q 012682 16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHV 51 (458)
Q Consensus 16 ~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV 51 (458)
.+-|.||.+..+...+...+..+.-....-+-|..+
T Consensus 15 t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~ 50 (575)
T 2i1j_A 15 ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYT 50 (575)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE
T ss_pred eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEE
Confidence 566999999999999998888775432212444443
No 115
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=25.36 E-value=98 Score=31.55 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCeEEEEEEecCCHHHHHHHHH---HhCCC-CEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 100 LPFRNMCAQRRVEVEVKVIESDDVAKAIADEV---ASCNI-NKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 100 ~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A---~e~~a-DlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
.++...+...|++++..|..-.-..+.+.+|+ +..++ +.||.|+-+-+.+.. -|.-.++ +||+-|
T Consensus 282 ~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpg---------vva~~t~--~PVIgv 350 (425)
T 2h31_A 282 EKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGP---------VMSGNTA--YPVISC 350 (425)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHH---------HHHHHCS--SCEEEC
T ss_pred HHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHh---------HHhccCC--CCEEEe
Confidence 34444455567887777754333344444444 45667 466666655444332 2233345 888888
Q ss_pred cC
Q 012682 176 EK 177 (458)
Q Consensus 176 ~k 177 (458)
+-
T Consensus 351 P~ 352 (425)
T 2h31_A 351 PP 352 (425)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 116
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=25.22 E-value=5.8e+02 Score=26.28 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 012682 330 ELEKLRIELRHVRGMYAIAQN 350 (458)
Q Consensus 330 Em~rLrlELk~t~~mY~~Ac~ 350 (458)
|-.|||.-|-...--|..|..
T Consensus 350 e~~~lrQRlddArNEItsaeS 370 (602)
T 1cii_A 350 EWDKLRQRLLDARNKITSAES 370 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455666445555555555544
No 117
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=25.12 E-value=2.4e+02 Score=29.14 Aligned_cols=79 Identities=5% Similarity=-0.002 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
.+-|..+.+.+...|+.+.. +. |++.+.|.+++++.+++.|+.-.. .....+.... .|...+ +.....|+|..+
T Consensus 99 ~~sL~~L~~~L~~~G~~L~v--~~-g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~rd~-~v~~~l-~~~gv~i~~~~~ 172 (525)
T 2j4d_A 99 MECLVDLRKNLMKRGLNLLI--RS-GKPEEILPSLAKDFGARTVFAHKE-TCSEEVDVER-LVNQGL-KRVGNSTKLELI 172 (525)
T ss_dssp HHHHHHHHHHHHHTTCCCEE--EE-SCHHHHHHHHHHHHTCSEEEEECC-CSHHHHHHHH-HHHHHH-HTTCSSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEE--Ee-CCHHHHHHHHHHHcCCCEEEEecc-CCHHHHHHHH-HHHHHH-HhcCCceEEEEe
Confidence 34455555556667876533 34 999999999999999999887533 2233333222 143333 221101677777
Q ss_pred cCCcc
Q 012682 176 EKGKL 180 (458)
Q Consensus 176 ~kgk~ 180 (458)
....+
T Consensus 173 ~~~~L 177 (525)
T 2j4d_A 173 WGSTM 177 (525)
T ss_dssp CCSCS
T ss_pred cCCEE
Confidence 66544
No 118
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=25.08 E-value=1.1e+02 Score=30.65 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=38.0
Q ss_pred hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCC---CCCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQS---QGIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 106 ~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~g---rs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+.+.||++..+. + +.+- -+.++..+|++|||+.+ -|++..+ .|+ -.-.++-+.. ..||||+..
T Consensus 229 L~~~GIpvtlI~-D--sa~~---~~M~~~~Vd~ViVGAD~V~aNG~v~NK-iGT-y~lAl~Ak~~-~vPfyV~ap 294 (374)
T 2yvk_A 229 LMQGGIDVTLIT-D--SMAA---HTMKEKQISAVIVGADRIAKNGDTANK-IGT-YGLAILANAF-DIPFFVAAP 294 (374)
T ss_dssp HHTTTCEEEEEC-G--GGHH---HHHHHTTCCEEEECCSEEETTCCEEEE-TTH-HHHHHHHHHT-TCCEEEECC
T ss_pred HHHcCCCEEEEe-h--hHHH---HHhhhcCCCEEEECccEEecCCCEEec-ccH-HHHHHHHHHc-CCCEEEecc
Confidence 345788875443 2 2222 23445679999999996 2344444 375 3444444433 399999976
No 119
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=25.01 E-value=1.7e+02 Score=28.12 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=27.1
Q ss_pred CCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEEEe
Q 012682 10 PNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVR 52 (458)
Q Consensus 10 ~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~ 52 (458)
|.....+++|++.| -.|--|+-++.+ .|. .++.+|..
T Consensus 175 P~g~~~kvlvllSG-vDS~vaa~ll~~----~G~-~v~~v~~~ 211 (307)
T 1vbk_A 175 PIGTEGRMIGILHD-ELSALAIFLMMK----RGV-EVIPVYIG 211 (307)
T ss_dssp CTTTTCEEEEECSS-HHHHHHHHHHHH----BTC-EEEEEEES
T ss_pred CcCCCCcEEEEEeC-CcHHHHHHHHHh----CCC-eEEEEEEE
Confidence 33455799999999 988766655443 566 49999986
No 120
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=24.89 E-value=1.2e+02 Score=25.11 Aligned_cols=45 Identities=2% Similarity=0.099 Sum_probs=31.8
Q ss_pred HHHHHhhcCCCeEEEEEEecC--------CHHHHHHHHHHhCCCCEEEEccCC
Q 012682 101 PFRNMCAQRRVEVEVKVIESD--------DVAKAIADEVASCNINKLVIGAQS 145 (458)
Q Consensus 101 ~~~~~~~~~gV~ve~vvle~G--------dpa~aIve~A~e~~aDlIVmGS~g 145 (458)
.++.+|..+|+.+..+..+.| .--..+++.++...+|.||+-.-.
T Consensus 29 ~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv~~ld 81 (138)
T 3bvp_A 29 RLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLVYKLD 81 (138)
T ss_dssp HHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEESSHH
T ss_pred HHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 345667778888766665433 234678888888889999997754
No 121
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=24.70 E-value=45 Score=28.48 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHhCCCCEEEEccC----CC-CCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 122 DVAKAIADEVASCNINKLVIGAQ----SQ-GIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 122 dpa~aIve~A~e~~aDlIVmGS~----gr-s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
...+.|.+++++++++.||||-. |. +...+... ..+..+-+.-+ +||+.|..
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~--~f~~~L~~~~~--lpV~~~DE 96 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARAR--KFANRIHGRFG--VEVKLHDE 96 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHH--HHHHHHHHHHC--CCEEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHH--HHHHHHHHHhC--CCEEEEcC
Confidence 34789999999999999999933 21 21111111 13344433334 88888854
No 122
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=24.60 E-value=1.7e+02 Score=24.33 Aligned_cols=66 Identities=6% Similarity=-0.086 Sum_probs=40.7
Q ss_pred HhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 105 MCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 105 ~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
+++..|.++... -..-|.+.|++.+.+.++|.|++.+.--.... .+ . .+...+-+..+..++|+|=
T Consensus 26 ~l~~~G~~Vi~l--G~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~-~~-~-~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 26 AFTNAGFNVVNI--GVLSPQELFIKAAIETKADAILVSSLYGQGEI-DC-K-GLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHTTCEEEEE--EEEECHHHHHHHHHHHTCSEEEEEECSSTHHH-HH-T-THHHHHHHTTCTTCEEEEE
T ss_pred HHHHCCCEEEEC--CCCCCHHHHHHHHHhcCCCEEEEEecCcCcHH-HH-H-HHHHHHHhcCCCCCEEEEE
Confidence 345578766443 22578999999999999999999877533222 22 2 2444443332323777654
No 123
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=24.59 E-value=1.6e+02 Score=25.01 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=23.9
Q ss_pred hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCC
Q 012682 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGI 148 (458)
Q Consensus 106 ~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~ 148 (458)
+...|++++..-+...++.+ |+....+ +|.||+|+...++
T Consensus 25 l~~~g~~v~~~~~~~~~~~~-~~~~~~~--~d~ii~Gspty~g 64 (161)
T 3hly_A 25 LVKTGVAVEMVDLRAVDPQE-LIEAVSS--ARGIVLGTPPSQP 64 (161)
T ss_dssp HHHTTCCEEEEETTTCCHHH-HHHHHHH--CSEEEEECCBSSC
T ss_pred HHhCCCeEEEEECCCCCHHH-HHHHHHh--CCEEEEEcCCcCC
Confidence 34467776655544334443 4333333 6999999997654
No 124
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=24.13 E-value=1.6e+02 Score=30.83 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcC---CCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCc
Q 012682 96 DRLLLPFRNMCAQR---RVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIF 149 (458)
Q Consensus 96 ~~lL~~~~~~~~~~---gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~ 149 (458)
.+-|..+..-+... |+.. +++. |+|.+.|.+++++.+|+.|+. .+.....
T Consensus 60 ~~sL~~L~~~L~~~~~~G~~L--~v~~-G~~~~vl~~L~~~~~a~~V~~-n~~~~~~ 112 (538)
T 3tvs_A 60 LDSLQDIDDQLQAATDGRGRL--LVFE-GEPAYIFRRLHEQVRLHRICI-EQDCEPI 112 (538)
T ss_dssp HHHHHHHHHHGGGSCSSSSCC--EEEE-SCHHHHHHHHHHHHCEEEECE-ECCCCGG
T ss_pred HHHHHHHHHHHHHhhcCCCeE--EEEe-CCHHHHHHHHHHHcCCCEEEE-ccCCCHH
Confidence 34455555666666 7764 3334 999999999999999999986 3333443
No 125
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.12 E-value=1.2e+02 Score=28.24 Aligned_cols=64 Identities=13% Similarity=-0.105 Sum_probs=39.3
Q ss_pred hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEEE
Q 012682 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV 175 (458)
Q Consensus 106 ~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV 175 (458)
+...|.++...= ..-|.+.|++.+.+.++|+|.+.+.....+. .+ . .+...+-+..+. |+|+|-
T Consensus 147 L~~~G~~Vi~LG--~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~-~~-~-~~i~~l~~~~~~-~~v~vG 210 (258)
T 2i2x_B 147 LRANGYNVVDLG--RDVPAEEVLAAVQKEKPIMLTGTALMTTTMY-AF-K-EVNDMLLENGIK-IPFACG 210 (258)
T ss_dssp HHHTTCEEEEEE--EECCSHHHHHHHHHHCCSEEEEECCCTTTTT-HH-H-HHHHHHHTTTCC-CCEEEE
T ss_pred HHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEEEeeccCCHH-HH-H-HHHHHHHhcCCC-CcEEEE
Confidence 445677654432 2468899999999999999998776433322 11 1 133444344443 777765
No 126
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=23.63 E-value=1.2e+02 Score=30.05 Aligned_cols=63 Identities=19% Similarity=0.090 Sum_probs=37.6
Q ss_pred hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEcC
Q 012682 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEK 177 (458)
Q Consensus 106 ~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~k 177 (458)
+.+.||++..+. + +.+- -+..+..+|++|||+.+- |++..+ .|+ -.-.++-+.. ..||||+..
T Consensus 204 L~~~GI~vtlI~-D--sa~~---~~M~~~~Vd~VivGAd~V~aNG~v~NK-iGT-~~lAl~Ak~~-~vPfyV~ap 269 (347)
T 1t9k_A 204 LMKDGIEVYVIT-D--NMAG---WLMKRGLIDAVVVGADRIALNGDTANK-IGT-YSLAVLAKRN-NIPFYVAAP 269 (347)
T ss_dssp HHTTTCEEEEEC-G--GGHH---HHHHTTCCSEEEECCSEEETTSCEEEE-TTH-HHHHHHHHHT-TCCEEEECC
T ss_pred HHhCCCCEEEEe-h--hHHH---HHhhcCCCCEEEECccEEecCCCEEec-ccH-HHHHHHHHHc-CCCEEEecc
Confidence 345788875443 2 2222 234456799999999962 344444 475 4444444443 399999975
No 127
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=23.17 E-value=1.2e+02 Score=30.50 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=37.9
Q ss_pred hcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 107 AQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 107 ~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
...||++..+. + +.+- -+..+..+|++|||+.+- |++..+ .|+ -.-.++-+.. ..||||+..-
T Consensus 234 ~~~GIpvtlI~-D--sa~~---~~M~~~~Vd~ViVGAD~V~aNG~v~NK-iGT-y~lAl~Ak~~-~vPfyV~ap~ 299 (383)
T 2a0u_A 234 VQEDIPCTLIC-D--GAAS---SLMLNRKIDAVVVGADRICQNGDTANK-IGT-YNLAVSAKFH-GVKLYVAAPT 299 (383)
T ss_dssp HHTTCCEEEEC-G--GGHH---HHHHHSCCCEEEECCSEECTTCCEEEE-TTH-HHHHHHHHHT-TCCEEEECCG
T ss_pred HHcCCCEEEEe-h--hHHH---HHhhcCCCCEEEECccEEecCCCEeec-ccH-HHHHHHHHHc-CCCEEEeCCc
Confidence 45688875543 2 2222 334456799999999962 344444 475 3444443333 3999999763
No 128
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=23.15 E-value=1.7e+02 Score=28.13 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=39.2
Q ss_pred HHHhhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEE-EccCCCCCccccccccchhHHHhhhC-CCCceEEEEcCCcc
Q 012682 103 RNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLV-IGAQSQGIFTWKFKKNNLSSRISICV-PSFCTVYGVEKGKL 180 (458)
Q Consensus 103 ~~~~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIV-mGS~grs~~~r~~lGSsVs~~Vlk~A-p~~C~VlVV~kgk~ 180 (458)
...+...|+++.........-+..++..+...++|+|| +|--| .+. .|+..+.+.. ...+|+.+|+-|..
T Consensus 50 ~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDG--Tl~------~v~~~l~~~~~~~~~plgiiP~Gt~ 121 (332)
T 2bon_A 50 IMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDG--TIN------EVSTALIQCEGDDIPALGILPLGTA 121 (332)
T ss_dssp HHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHH--HHH------HHHHHHHHCCSSCCCEEEEEECSSS
T ss_pred HHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccch--HHH------HHHHHHhhcccCCCCeEEEecCcCH
Confidence 34455677777655443223344444444445688665 44333 222 2555555321 22389999998865
Q ss_pred c-ccc
Q 012682 181 S-SVR 184 (458)
Q Consensus 181 ~-s~r 184 (458)
= ..|
T Consensus 122 N~fa~ 126 (332)
T 2bon_A 122 NDFAT 126 (332)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 3 344
No 129
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=22.76 E-value=1.4e+02 Score=25.40 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=24.7
Q ss_pred HhhcCCCeEEEEEEecC-CHHHHHHHHHHhCCCCEEEEccCCCCC
Q 012682 105 MCAQRRVEVEVKVIESD-DVAKAIADEVASCNINKLVIGAQSQGI 148 (458)
Q Consensus 105 ~~~~~gV~ve~vvle~G-dpa~aIve~A~e~~aDlIVmGS~grs~ 148 (458)
.+...|++++..-+... ++.+ |+.... .+|.||+|+...++
T Consensus 28 ~l~~~g~~v~~~~~~~~~~~~~-~~~~~~--~~d~ii~Gspty~g 69 (159)
T 3fni_A 28 GITKTGVGVDVVDLGAAVDLQE-LRELVG--RCTGLVIGMSPAAS 69 (159)
T ss_dssp HHHHTTCEEEEEESSSCCCHHH-HHHHHH--TEEEEEEECCBTTS
T ss_pred HHHHCCCeEEEEECcCcCCHHH-HHHHHH--hCCEEEEEcCcCCC
Confidence 34446787665555433 4444 433333 37999999997754
No 130
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=22.53 E-value=1.5e+02 Score=28.16 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=35.4
Q ss_pred CCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCC---CCccccccccchhHHHhhhCCCCceEEEEcCC
Q 012682 109 RRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ---GIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178 (458)
Q Consensus 109 ~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVmGS~gr---s~~~r~~lGSsVs~~Vlk~Ap~~C~VlVV~kg 178 (458)
.||++..+. +.-++- ++ ..+|++++|+.+- |++..+ .|...-..++++.. .||||+..-
T Consensus 159 ~gI~vtli~--dsa~~~-~m-----~~vd~vivGAd~i~~nG~v~nk-iGt~~iA~~A~~~~--vp~~V~a~~ 220 (276)
T 1vb5_A 159 SGIEFEVIT--DAQMGL-FC-----REASIAIVGADMITKDGYVVNK-AGTYLLALACHENA--IPFYVAAET 220 (276)
T ss_dssp TTCCEEEEC--GGGHHH-HH-----TTCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTT--CCEEEECCG
T ss_pred CCCCEEEEc--HHHHHH-HH-----ccCCEEEEcccEEecCCCEeec-hhHHHHHHHHHHcC--CCEEEeccc
Confidence 588775433 233333 22 2699999999973 455555 67522233344443 899999764
No 131
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=22.21 E-value=99 Score=28.73 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=25.9
Q ss_pred ccCCCCCCCeEEEeecCCHHhHHHHHHHHHHhccCCCCeEEEEE
Q 012682 7 VELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLH 50 (458)
Q Consensus 7 ~~~~~~~~~~ILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLH 50 (458)
||+. ...++|++++|-+ ...++.|++ .|.. +++.|
T Consensus 30 veG~-~~V~~I~~alD~t---~~vi~eAi~----~~ad-lIitH 64 (242)
T 2yyb_A 30 VEGK-RTVRKVGAAVDAG---EAIFRKALE----EEVD-FLIVH 64 (242)
T ss_dssp ECCC-SBCCCEEEEEECS---HHHHHHHHH----TTCS-EEEEE
T ss_pred EcCC-cccCEEEEEEcCC---HHHHHHHHH----CCCC-EEEEC
Confidence 4454 7789999999997 566777765 4554 88887
No 132
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=21.88 E-value=8.4e+02 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=16.4
Q ss_pred hHHHHHHHhHHHHhHHH-HhhhhhhhhHhhhhHHHH
Q 012682 343 GMYAIAQNEANDASRKV-NDLNKCKLEEETRLSEIQ 377 (458)
Q Consensus 343 ~mY~~Ac~Ea~~Ak~k~-~eL~~~k~EE~~k~eea~ 377 (458)
.+-..|.-||..-.|.+ ..|.+.|+..+..-|.+|
T Consensus 668 sqEa~Ar~~A~~~eQea~g~Lerqki~d~a~aE~~r 703 (861)
T 2zuo_A 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKAR 703 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444 345555555554444433
No 133
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.39 E-value=82 Score=33.33 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhh
Q 012682 332 EKLRIELRHVRGMYAIAQNEANDASRKVNDLN 363 (458)
Q Consensus 332 ~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~ 363 (458)
..|...|+|..+=...|..+...+..++.+|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 369 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLE 369 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33344455555555556666666666666553
No 134
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=20.87 E-value=39 Score=25.86 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=24.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 012682 322 ESQVDVNFELEKLRIELRHVRGMYAIAQNEAN 353 (458)
Q Consensus 322 ~~~~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~ 353 (458)
.+.+.+..++++||.||.-.--.-+.||.+.+
T Consensus 17 ~~~~~lr~~veqLr~el~~~RikVS~aa~~L~ 48 (73)
T 1got_G 17 TEKDKLKMEVDQLKKEVTLERMLVSKCCEEFR 48 (73)
T ss_dssp THHHHHHHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCchhhHHHHHHHHH
Confidence 34577888999999999887777777765543
No 135
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.75 E-value=3.6e+02 Score=22.32 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhHHHHhhh
Q 012682 325 VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLN 363 (458)
Q Consensus 325 ~~~eaEm~rLrlELk~t~~mY~~Ac~Ea~~Ak~k~~eL~ 363 (458)
+.+..|+.+||-||...+- .++..-..-+.++++|.
T Consensus 18 e~Lkreie~lk~ele~l~~---E~q~~v~ql~~~i~~Le 53 (120)
T 3i00_A 18 ERLYREISGLKAQLENMKT---ESQRVVLQLKGHVSELE 53 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567788888888887743 33333334444455543
No 136
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=20.46 E-value=93 Score=28.31 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=26.1
Q ss_pred hhcCCCeEEEEEEecCCHHHHHHHHHHhCCCCEEEE
Q 012682 106 CAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVI 141 (458)
Q Consensus 106 ~~~~gV~ve~vvle~Gdpa~aIve~A~e~~aDlIVm 141 (458)
+...|.+| +.+--.-|.+.|++.+.++++|.|.|
T Consensus 116 l~~~G~~V--i~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 116 LGANGFQI--VDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp HHHTSCEE--EECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred HHHCCCeE--EEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 44567654 33433579999999999999999999
No 137
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=20.32 E-value=6.7e+02 Score=25.33 Aligned_cols=12 Identities=50% Similarity=0.465 Sum_probs=5.3
Q ss_pred HHHHHHhhcccc
Q 012682 442 EDMELSIRALFI 453 (458)
Q Consensus 442 eEIe~AT~~f~~ 453 (458)
++|..+.+..++
T Consensus 268 e~l~~~i~~id~ 279 (486)
T 3haj_A 268 HDLEQSIRAADA 279 (486)
T ss_dssp HHHHHHHHTCCH
T ss_pred HHHHHHHHhCCH
Confidence 344444444443
No 138
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=20.11 E-value=1.9e+02 Score=29.59 Aligned_cols=79 Identities=8% Similarity=0.084 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEEe-cCCHHHHHHHHHHhCCCCEEEEccCCCCCccccccccchhHHHhhhCCCCceEEE
Q 012682 96 DRLLLPFRNMCAQRRVEVEVKVIE-SDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYG 174 (458)
Q Consensus 96 ~~lL~~~~~~~~~~gV~ve~vvle-~Gdpa~aIve~A~e~~aDlIVmGS~grs~~~r~~lGSsVs~~Vlk~Ap~~C~VlV 174 (458)
.+-|..+.+.+...|+.+....+. .|++.+.|.+++++.+++.|+.-.. .....+.. -..|.+.... |+|..
T Consensus 55 ~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~-~~~~~~~r-----d~~v~~~l~~-i~~~~ 127 (471)
T 1dnp_A 55 NAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQ-YEVNERAR-----DVEVERALRN-VVCEG 127 (471)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHHHHHTCCEEEEECC-CSHHHHHH-----HHHHHHHCTT-SEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEEccCCCCHHHHHHHHHHHcCCCEEEEecc-cCchHHHH-----HHHHHHHhcC-cEEEE
Confidence 334455555566678775443221 3899999999999999999887443 23332222 1334333333 78877
Q ss_pred EcCCccc
Q 012682 175 VEKGKLS 181 (458)
Q Consensus 175 V~kgk~~ 181 (458)
+....+.
T Consensus 128 ~~~~~l~ 134 (471)
T 1dnp_A 128 FDDSVIL 134 (471)
T ss_dssp ECCSSSS
T ss_pred ecCCEEE
Confidence 7665443
Done!