BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012683
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 134/255 (52%), Gaps = 12/255 (4%)
Query: 21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
A+ G+L ++K + + +G S V+++K LH AAR G T+V KYLL+ K
Sbjct: 21 ASFMGHLPIVKNLLQ------RGASPNVSNVK---VETPLHMAARAGHTEVAKYLLQN-K 70
Query: 81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
V+ + +D +TPL AAR GHT K L E+ ANP + + G T LH +A G++E +
Sbjct: 71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
LL K A + G TPL AA +G+ ++LLE A+PNA ++ +TPL AV
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190
Query: 200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
+L + LL+ + TPLHIAA E+ + LL+ G N G P+
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250
Query: 259 VAAARGNREAVEILF 273
+AA G+ E V +L
Sbjct: 251 LAAQEGHAEMVALLL 265
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 108/219 (49%), Gaps = 5/219 (2%)
Query: 92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
TPL A+ GH K L + GA+P + + T LH +A G+ E+ YLL A+V++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 152 ES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL-TCLDLLIQ 209
++ D TPL AA G VK+LLE++ANPN T TPL A G + T L LL +
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 210 XXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
TPLH+AA G + + LL+ A PN ++G P+ VA N + V
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 270 EILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNL 308
++L P P P W +G + Q+E R+L
Sbjct: 196 KLLLP-RGGSPHSPAW--NGYTPLHIAAKQNQVEVARSL 231
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 113/250 (45%), Gaps = 14/250 (5%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
LH A D+ K LL + +G TPL AA+Q E A+ L ++G +
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
S G T LH +A G+ E++ LLSK A + + +G TPL A G VL++H
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIK 237
+A T TPL A G++ + L+Q +PLH AA G T+I+
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 361
Query: 238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP----------SIPKWTV 287
LLK GA PN DG P+ +A G ++L +T E S P+ TV
Sbjct: 362 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE-TV 420
Query: 288 DGILEYMQSE 297
D IL+ + E
Sbjct: 421 DEILDVSEDE 430
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 33/180 (18%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
L+ AA G+ + K L E+GA+P + G T LH++A G+ E++ LLSKGA+ ++ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD TPL +AA +G +E VK+LL A+PNA+ D
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG------------------------ 103
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH AA+ G EI+K LL GADPN +D DG+ P+ +A GN E V++L
Sbjct: 104 --------RTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD 70
+ E ++ + AA GN D +K + + D + D++ R LH+AA G +
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGAD---------PNASDSDGRTPLHYAAENGHKE 51
Query: 71 VCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
+ K LL + D + +D DG TPL +AA GH E K L GA+P + G T LH++
Sbjct: 52 IVKLLLSK-GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYA 110
Query: 131 AGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVL 174
A G+ E++ LLSKGA+ + S+SD TPL A HG +E VK+L
Sbjct: 111 AENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QXX 211
S+ G LI AA +G ++ VK LLE+ A+PNA D TPL A G + LL+ +
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH AA+ G EI+K LL GADPN D DG+ P+ AA G++E V++
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 272 LF 273
L
Sbjct: 122 LL 123
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 12/214 (5%)
Query: 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
NKR LH AA G D+C ++L + ++DT ED TPL+ AA H E KYL + GA
Sbjct: 10 NKRSPLHAAAEAGHVDIC-HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVK 172
G+T LH +A G+ E++ YLLS G +V+ + D G TP+IWA + + VK
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 173 VLLEHHANPNA-ETEDNITPLLSAVAAGSLTCLD----LLIQXXXXXXXXXXXXTPLHIA 227
+LL ++ N + E+NI +A + C+D LL +PLHIA
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSG----CVDIAEILLAAKCDLHAVNIHGDSPLHIA 184
Query: 228 ADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
A + + L +D + +++G+ P+Q A+
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 1/149 (0%)
Query: 48 VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
+ D KDA LH AA++G +V +YLL ++DV+ QD+ G TP++ A H + K
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 108 YLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG 166
L G++ I N LH +A G +++ LL+ ++ + + G +PL AA
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN 188
Query: 167 QQEAVKVLLEHHANPNAETEDNITPLLSA 195
+ + V + L ++ + ++ TPL A
Sbjct: 189 RYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 4/205 (1%)
Query: 81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
++ + ++ +PL AA GH + L + GAN S T L +A ++E +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 141 YLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEH-HANPNAETEDNITPLLSAVAA 198
YL+ GA VD +++ T L AA G E V+ LL + + N + + TP++ A
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 199 GSLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPI 257
+ + LL+ + LH AA G +I + LL A D + + G P+
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Query: 258 QVAAARGNREAVEILFPLTSEDPSI 282
+ AAR NR +LF D ++
Sbjct: 182 HI-AARENRYDCVVLFLSRDSDVTL 205
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQX-XXXXXXXXXXXTPLHIAADIGSTEII 236
H N E ++ +PL +A AG + +L+Q TPL AA+ E +
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
K L+KAGA + D +G + +AA +G+ E V+ L
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 2/141 (1%)
Query: 134 GNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
GN + + LL GA+V+ S+SD TPL AA +G +E VK+LL A+PNA+ D TPL
Sbjct: 15 GNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 74
Query: 193 LSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
A G + LL+ Q TPLH+AA+ G E++K LL GADPN +D
Sbjct: 75 HLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDS 134
Query: 252 DGQKPIQVAAARGNREAVEIL 272
DG+ P+ +A GN E V++L
Sbjct: 135 DGRTPLDLAREHGNEEVVKLL 155
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AA G D K LLE DV+ D DG+TPL AA GH E K L GA+P +
Sbjct: 11 AAENGNKDRVKDLLEN-GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANP 181
G T LH +A G+ E++ LLS+GA+ ++ +SD TPL AA +G +E VK+LL A+P
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 182 NAETEDNITPLLSAVAAGSLTCLDLL 207
N D TPL A G+ + LL
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD 70
+ E ++ + AA GN D +K + + D + D++ + LH AA G +
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGAD---------VNASDSDGKTPLHLAAENGHKE 51
Query: 71 VCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
V K LL + D + +D DG+TPL AA GH E K L GA+P + G T LH +
Sbjct: 52 VVKLLLSQ-GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 110
Query: 131 AGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVL 174
A G+ E++ LLS+GA+ + S+SD TPL A HG +E VK+L
Sbjct: 111 AENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QXX 211
S+ G LI AA +G ++ VK LLE+ A+ NA D TPL A G + LL+ Q
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA+ G E++K LL GADPN D DG+ P+ +AA G++E V++
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 272 LF 273
L
Sbjct: 122 LL 123
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
L+ AA G+ + K L E+GA+ + G T LH +A G+ E++ LLS+GA+ ++ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QXX 211
SD TPL AA +G +E VK+LL A+PNA+ D TPL A G + LL+ Q
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
TPL +A + G+ E++K L K G
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Query: 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYL 75
++ + AA GN D +K + + D + D++ R LH+AA+EG ++ K L
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGAD---------VNASDSDGRTPLHYAAKEGHKEIVKLL 56
Query: 76 LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
+ + DV+ +D DG TPL +AA++GH E K L GA+ + G T LH++A G+
Sbjct: 57 ISK-GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 115
Query: 136 IELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVL 174
E++ L+SKGA+V+ S+SD TPL A HG +E VK+L
Sbjct: 116 KEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 33/180 (18%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
L+ AA G+ + K L E+GA+ + G T LH++A G+ E++ L+SKGA+V++ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD TPL +AA G +E VK+L+ A+ NA+ D
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG------------------------ 103
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH AA G EI+K L+ GAD N +D DG+ P+ +A GN E V++L
Sbjct: 104 --------RTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QXX 211
S+ G LI AA +G ++ VK L+E+ A+ NA D TPL A G + LLI +
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH AA G EI+K L+ GAD N D DG+ P+ AA G++E V++
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 272 LF 273
L
Sbjct: 122 LI 123
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYL 75
++ + AA GN D +K + + D + D++ R LH AA G +V K L
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGAD---------VNASDSDGRTPLHHAAENGHKEVVKLL 56
Query: 76 LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
+ + DV+ +D DG TPL HAA GH E K L GA+ + G T LHH+A G+
Sbjct: 57 ISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 115
Query: 136 IELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVL 174
E++ L+SKGA+V+ S+SD TPL A HG +E VK+L
Sbjct: 116 KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 134 GNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
GN + + L+ GA+V+ S+SD TPL AA +G +E VK+L+ A+ NA+ D TPL
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 74
Query: 193 LSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
A G + LLI + TPLH AA+ G E++K L+ GAD N +D
Sbjct: 75 HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS 134
Query: 252 DGQKPIQVAAARGNREAVEIL 272
DG+ P+ +A GN E V++L
Sbjct: 135 DGRTPLDLAREHGNEEVVKLL 155
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
L+ AA G+ + K L E+GA+ + G T LHH+A G+ E++ L+SKGA+V++ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QXX 211
SD TPL AA +G +E VK+L+ A+ NA+ D TPL A G + LLI +
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
TPL +A + G+ E++K L K G
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QXX 211
S+ G LI AA +G ++ VK L+E+ A+ NA D TPL A G + LLI +
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH AA+ G E++K L+ GAD N D DG+ P+ AA G++E V++
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 121
Query: 272 LF 273
L
Sbjct: 122 LI 123
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
N R LH AAR G +V K LLE DV+ +D++G TPL AAR GH E K L E GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV 173
+ G T LH +A G++E++ LL GA+V+++ G TPL AA +G E VK+
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 174 LLE 176
LLE
Sbjct: 120 LLE 122
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXX 216
TPL AA +G E VK+LLE A+ NA+ ++ TPL A G L + LL++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 217 X-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
TPLH+AA G E++K LL+AGAD N D++G+ P+ +AA G+ E V++L
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
+ KD N R LH AAR G +V K LLE DV+ +D++G TPL AAR GH E K L
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
E GA+ G T LH +A G++E++ LL GA
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 33/184 (17%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ ++G T LH +A G++E++ LL GA+V+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
G TPL AA G E V+VLL++ A+ NA + TPL
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
H+AA+IG EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 118 ------------HLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
L
Sbjct: 166 QKLN 169
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AAD G E+++ LLK GAD N D +G P+ +AA G+ E VE+
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Query: 38 DDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ ++ G LH AA G ++ + LL+ DV+ D G TPL
Sbjct: 27 DDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKN-GADVNADDSLGVTPLH 85
Query: 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
AA +GH E + L ++GA+ + G T LH +A IG++E++ LL GA+V+++
Sbjct: 86 LAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKF 145
Query: 156 G-TPLIWAAGHGQQEAVKVL 174
G T + +G ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 33/180 (18%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G T LH +A +G++E++ LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
+G TPL AA G E V+VLL++ A+ NA+ D I GS
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD--DTI---------GS------------ 114
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AAD G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 115 ---------TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NAE TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 213 XXXXXX-XXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLK GAD N D G P+ +AA G+ E VE+
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 38 DDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ + G LH AAR G ++ + LL+ DV+ D G TPL
Sbjct: 27 DDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN-GADVNALDFSGSTPLH 85
Query: 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
AA++GH E + L ++GA+ +G+T LH +A G++E++ LL GA+V+++
Sbjct: 86 LAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKF 145
Query: 156 G-TPLIWAAGHGQQEAVKVL 174
G T + +G ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 33/184 (17%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
LL AAR G + + L +GA+ + G+T LH +A IG+ E++ LL GA+V++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
+D TPL AA +G E V+VLL++ A+ NA+ +TPL
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
H+AAD G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 118 ------------HLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
L
Sbjct: 166 QKLN 169
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA + TPL A G +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 213 XXXXXXXXX-TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AAD G EI++ LLK GAD N D G P+ +AA RG+ E VE+
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 38 DDQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ + +G+ LH AA G ++ + LL+ DV+ +D DG TPL
Sbjct: 27 DDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH-GADVNARDTDGWTPLH 85
Query: 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
AA GH E + L ++GA+ G T LH +A G++E++ LL GA+V+++
Sbjct: 86 LAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKF 145
Query: 156 G 156
G
Sbjct: 146 G 146
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 33/180 (18%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
LL AAR G + + L +GA+ G T LH +A G++E++ LL GA+V++ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
D TPL AA G E V+VLL+ A+ NA+ +D TPL
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-------------------- 105
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
H+AA G EI++ LLKAGAD N D+ G+ P +A GN + E+L
Sbjct: 106 ------------HLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
D G L+ AA GQ + V++L+ + A+ NA+ +D TPL A G L +++L++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 214 XXXXXXXX-TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA G EI++ LLKAGAD N D+DG P+ +AA G+ E VE+L
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 273 F 273
Sbjct: 121 L 121
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 38 DDQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ +K G LH AAREG ++ + LL+ DV+ +D+DG TPL
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLH 73
Query: 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
AAR+GH E + L + GA+ G T LH +A G++E++ LL GA+V+++
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 156 G-TPLIWAAGHGQQEAVKVL 174
G TP A +G ++ +VL
Sbjct: 134 GKTPFDLAIDNGNEDIAEVL 153
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 87/184 (47%), Gaps = 33/184 (17%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ N G T LH +A G++E++ LL GA+VD+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
G TPL AA G E V+VLL++ A+ NA D +TPL
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
H+AA G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 118 ------------HLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
L
Sbjct: 166 QKLN 169
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ D G TPL AA GH E + L +HGA+
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANP 181
G T LH +A G++E++ LL GA+V++ +SD TPL AA G E V+VLL+H A+
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 182 NAE 184
NA+
Sbjct: 140 NAQ 142
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA TPL A +G L +++L++
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLK GAD N D DG P+ +AA G E VE+
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 85/180 (47%), Gaps = 33/180 (18%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ N G T LH +A G++E++ LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
G TPL AA G E V+VLL+H A+ NA D
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDG------------------------ 113
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 114 --------HTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA D TPL A + G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLK GAD N D DG P+ +AA G+ E VE+
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ D DG TPL AA GH E + L ++GA+
Sbjct: 21 AARAGQDDEVRILMAN-GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANP 181
G T LH +A G++E++ LL GA+V++ ++D TPL AA +G E V+VLL+H A+
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 182 NAE 184
NA+
Sbjct: 140 NAQ 142
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 33/184 (17%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ LG T LH +A G++E++ LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
+ G TPL AA +G E V+VLL+H A+ NA+ + TPL
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
H+AA G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 118 ------------HLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
L
Sbjct: 166 QKLN 169
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ D G TPL AA+ GH E + L ++GA+ N
Sbjct: 21 AARAGQDDEVRILMAN-GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
GAT LH +A G++E++ LL GA+V+++ G TPL AA G E V+VLL++ A+
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 182 NAE 184
NA+
Sbjct: 140 NAQ 142
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 213 XXXX-XXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AAD G EI++ LLK GAD N D +G P+ +AA G+ E VE+
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEV 131
Query: 272 LFPLTSE 278
L ++
Sbjct: 132 LLKYGAD 138
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA+ +D TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLKAGAD N D+DG P+ +AA G+ E VE+
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 87/180 (48%), Gaps = 33/180 (18%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
LL AAR G + + L +GA+ G T LH +A G++E++ LL GA+V++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
D TPL AA G E V+VLL+ A+ NA+ +D TPL
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
H+AA G EI++ LLKAGAD N D+ G+ ++ GN + EIL
Sbjct: 118 ------------HLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 38 DDQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ +K G LH AAREG ++ + LL+ DV+ +D+DG TPL
Sbjct: 27 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLH 85
Query: 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
AAR+GH E + L + GA+ G T LH +A G++E++ LL GA+V+++
Sbjct: 86 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 145
Query: 156 G-TPLIWAAGHGQQEAVKVL 174
G T + +G ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 88/180 (48%), Gaps = 33/180 (18%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
LL AAR G + + L +GA+ G T LH +A G++E++ LL GA+V++ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
D TPL AA G E V+VLL+ A+ NA+ +D TPL
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-------------------- 105
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
H+AA G EI++ LLKAGAD N D+ G+ P +A G+ + E+L
Sbjct: 106 ------------HLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
D G L+ AA GQ + V++L+ + A+ NA+ +D TPL A G L +++L++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 214 XXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA G EI++ LLKAGAD N D+DG P+ +AA G+ E VE+L
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 273 F 273
Sbjct: 121 L 121
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 38 DDQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ +K G LH AAREG ++ + LL+ DV+ +D+DG TPL
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLH 73
Query: 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
AAR+GH E + L + GA+ G T LH +A G++E++ LL GA+V+++
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 156 G-TPLIWAAGHGQQEAVKVL 174
G TP A G ++ +VL
Sbjct: 134 GKTPFDLAIREGHEDIAEVL 153
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Query: 142 LLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS 200
L++ GA+V++E D+G TPL AA G E V+VLL+H A+ NA + TPL A G
Sbjct: 33 LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH 92
Query: 201 LTCLDLLIQXXXXXXXXXXXX-TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
L +++L++ TPLH+AAD G EI++ LLK GAD N D+ G+ +
Sbjct: 93 LEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 260 AAARGNREAVEILFPLT 276
+ GN + EIL L
Sbjct: 153 SIDNGNEDLAEILQKLN 169
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ +D+ G+TPL AA +GH E + L +HGA+ +
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
G T LH +A G++E++ LL GA+V++ G TPL AA G E V+VLL++ A+
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 182 NAE 184
NA+
Sbjct: 140 NAQ 142
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NAE + TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 213 XXXXXXXXX-TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLK GAD N TD G P+ +AA G+ E VE+
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 272 LFPLTSEDPSIPKW 285
L ++ + K+
Sbjct: 132 LLKYGADVNAQDKF 145
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 33/184 (17%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ +G T LH +A G++E++ LL GA+V++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
G TPL AA G E V+VLL++ A+ NA+ ++ ITPL
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
H+AA+ G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 118 ------------HLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Query: 273 FPLT 276
L
Sbjct: 166 QKLN 169
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ D G TPL AA GH E + L ++GA+ L
Sbjct: 21 AARAGRDDEVRILMAN-GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
G+T LH +A G++E++ LL GA+V+++ D G TPL AA G E V+VLL++ A+
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 182 NAE 184
NA+
Sbjct: 140 NAQ 142
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA G+ + V++L+ + A+ NA TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLK GAD N D++G P+ +AA RG+ E VE+
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 76 LEELKLDV-------DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
LEELK + D+D T L A GHTE ++L + G + G + LH
Sbjct: 19 LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 78
Query: 129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
+A G E++ LL KGA+V++ + G TPL +AA + E +LLE ANP+A+
Sbjct: 79 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 188 NITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADP 246
T + A A G+L + +L+ TPLH+A D E K L+ GA
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
Query: 247 NVTDEDGQKPIQVA 260
+ +++ + P+QVA
Sbjct: 199 YIENKEEKTPLQVA 212
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
TALH + G+ E++ +LL G V+ + DAG +PL AA G+ E VK LL A NA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
++ TPL H AA EI LL+ G
Sbjct: 102 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 129
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
A+P+ D + AAA+GN + + IL
Sbjct: 130 ANPDAKDHYEATAMHRAAAKGNLKMIHILL 159
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
+D+ T L A +AG ++ L+Q +PLHIAA G EI+K LL GA
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
N +++G P+ AA++ NR + ++ +P
Sbjct: 98 QVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 132
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D KD + A+H AA +G + LL K + QD +G TPL A + E AK L
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Query: 110 FEHGANPTI 118
GA+ I
Sbjct: 192 VSQGASIYI 200
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 76 LEELKLDV-------DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
LEELK + D+D T L A GHTE ++L + G + G + LH
Sbjct: 20 LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 79
Query: 129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
+A G E++ LL KGA+V++ + G TPL +AA + E +LLE ANP+A+
Sbjct: 80 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 139
Query: 188 NITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADP 246
T + A A G+L + +L+ TPLH+A D E K L+ GA
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
Query: 247 NVTDEDGQKPIQVA 260
+ +++ + P+QVA
Sbjct: 200 YIENKEEKTPLQVA 213
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
TALH + G+ E++ +LL G V+ + DAG +PL AA G+ E VK LL A NA
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
++ TPL H AA EI LL+ G
Sbjct: 103 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 130
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
A+P+ D + AAA+GN + + IL
Sbjct: 131 ANPDAKDHYEATAMHRAAAKGNLKMIHILL 160
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
+D+ T L A +AG ++ L+Q +PLHIAA G EI+K LL GA
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
N +++G P+ AA++ NR + ++ +P
Sbjct: 99 QVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 133
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D KD + A+H AA +G + LL K + QD +G TPL A + E AK L
Sbjct: 134 DAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Query: 110 FEHGANPTI 118
GA+ I
Sbjct: 193 VSQGASIYI 201
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 33/180 (18%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
LL AAR G + + L +GA+ + G T LH +A +G++E++ LL GA+V++ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
++ TPL AA G E V+VLL++ A+ NA+ ITP
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITP--------------------- 104
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
L++AA G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 105 -----------LYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
D G L+ AA GQ + V++L+ + A+ NA TPL A A G L +++L++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 214 XXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA +G EI++ LLK GAD N D G P+ +AA G+ E VE+L
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 273 F 273
Sbjct: 121 L 121
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ D + D G TPL AA GH E + L +GA+
Sbjct: 9 AARAGQDDEVRILMAN-GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN 67
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
G T LH +A +G++E++ LL GA+V+++ G TPL AA G E V+VLL+H A+
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 182 NAE 184
NA+
Sbjct: 128 NAQ 130
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 95/199 (47%), Gaps = 2/199 (1%)
Query: 64 AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
A GK D K + K D+D T L A GHTE ++L + G + G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN 182
+ LH +A G E++ LL KGA V++ + G TPL +AA + E +LLE ANP+
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 183 AETEDNITPLLSAVAAGSLTCLD-LLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLK 241
A+ + T + A A G+L + LL TPLH+A D E K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 242 AGADPNVTDEDGQKPIQVA 260
GA + +++ + P+QVA
Sbjct: 194 QGASIYIENKEEKTPLQVA 212
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
TALH + G+ E++ +LL G V+ + DAG +PL AA G+ E VK LL A+ NA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
++ TPL H AA EI LL+ G
Sbjct: 102 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 129
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
A+P+ D + AAA+GN + V IL
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
+D+ T L A +AG ++ L+Q +PLHIAA G EI+K LL GA
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
N +++G P+ AA++ NR + ++ +P
Sbjct: 98 HVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 132
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D KD A+H AA +G + LL K + QD +G TPL A + E AK+L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
GA+ I + T L G + L+ L++G E
Sbjct: 192 VTQGASIYIENKEEKTPLQ--VAKGGLGLILKRLAEGEE 228
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 95/199 (47%), Gaps = 2/199 (1%)
Query: 64 AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
A GK D K + K D+D T L A GHTE ++L + G + G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN 182
+ LH +A G E++ LL KGA V++ + G TPL +AA + E +LLE ANP+
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 183 AETEDNITPLLSAVAAGSLTCLD-LLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLK 241
A+ + T + A A G+L + LL TPLH+A D E K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 242 AGADPNVTDEDGQKPIQVA 260
GA + +++ + P+QVA
Sbjct: 194 QGASIYIENKEEKTPLQVA 212
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
TALH + G+ E++ +LL G V+ + DAG +PL AA G E VK LL A+ NA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
++ TPL H AA EI LL+ G
Sbjct: 102 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 129
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
A+P+ D + AAA+GN + V IL
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
+D+ T L A +AG ++ L+Q +PLHIAA G EI+K LL GA
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
N +++G P+ AA++ NR + ++ +P
Sbjct: 98 HVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 132
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D KD A+H AA +G + LL K + QD +G TPL A + E AK+L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
GA+ I + T L G + L+ L++G E
Sbjct: 192 VTQGASIYIENKEEKTPLQ--VAKGGLGLILKRLAEGEE 228
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G T LH +A G++E++ LL GA+V+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
G TPL AA G E V+VLL++ A+ NA TPL
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
H+AA G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 118 ------------HLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
L
Sbjct: 166 QKLN 169
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLK GAD N +D G P+ +AA RG+ E VE+
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Query: 38 DDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ +D LH AA G ++ + LL+ DV+ +D G TPL
Sbjct: 27 DDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKN-GADVNAKDSLGVTPLH 85
Query: 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
AAR+GH E + L ++GA+ + G T LH +A G++E++ LL GA+V+++
Sbjct: 86 LAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKF 145
Query: 156 G-TPLIWAAGHGQQEAVKVL 174
G T + +G ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 33/175 (18%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ N G T LH +A G++E++ LL GA+VD+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
G TPL AA G E V+VLL++ A+ NA D+
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNA--------------------FDM------ 111
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
TPLH+AAD G EI++ LLK GAD N D+ G+ ++ GN +
Sbjct: 112 ------TGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA +TPL A +G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLK GAD N D G P+ +AA G+ E VE+
Sbjct: 72 DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ D G TPL AA GH E + L +HGA+
Sbjct: 21 AARAGQDDEVRILIAN-GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
G T LH +A G++E++ LL GA+V++ G TPL AA G E V+VLL++ A+
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 182 NAE 184
NA+
Sbjct: 140 NAQ 142
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 38 DDQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ + G LH AA G ++ + LL+ DVD D G TPL
Sbjct: 27 DDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH-GADVDAADVYGFTPLH 85
Query: 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
AA GH E + L ++GA+ G+T LH +A G++E++ LL GA+V+++
Sbjct: 86 LAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF 145
Query: 156 G 156
G
Sbjct: 146 G 146
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
AA +G+L++++ + K D D D LH AA G ++ + LL+
Sbjct: 54 AAVSGHLEIVEVLLKHGAD---------VDAADVYGFTPLHLAAMTGHLEIVEVLLK-YG 103
Query: 81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
DV+ D G TPL AA +GH E + L ++GA+ G TA S GN +L
Sbjct: 104 ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 35/242 (14%)
Query: 28 DLLKKIAKQLDDQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDT 85
D++K + ++ + L + D++ +K LH+AA + D+ KY + + + VD
Sbjct: 12 DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI-VDQ 70
Query: 86 QDED-GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS 144
D TPL A RQGH L ++GA+P++ G + +H +A G+ ++ YL++
Sbjct: 71 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 145 KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
KG +VD G TPL+WAA H +P T
Sbjct: 131 KGQDVDMMDQNGMTPLMWAA----------YRTHSVDP--------------------TR 160
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
L L T LH A G+T +I LL+AGA+ + + G+ + +A R
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
Query: 264 GN 265
N
Sbjct: 221 KN 222
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 34/179 (18%)
Query: 87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG 146
D+ ++ A + G E + L E G + P T LH +A I+L+ Y +SKG
Sbjct: 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65
Query: 147 AEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
A VD TPL WA G V L+++ A+P S + +C
Sbjct: 66 AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP------------SLIDGEGCSC- 112
Query: 205 DLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
+H+AA G T I+ L+ G D ++ D++G P+ AA R
Sbjct: 113 -------------------IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR 152
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
TPLH A G ++ L+K GADP++ D +G I +AA G+ V L
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 86/184 (46%), Gaps = 33/184 (17%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G T LH +A G++E++ LL GA+V++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
AG TPL AA G E V+VLL++ A+ NA +
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG------------------------ 113
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 114 --------HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
L
Sbjct: 166 QKLN 169
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA G+ + V++L+ + A+ NAE TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPL +AA G EI++ LLK GAD N D +G P+ +AA G+ E VE+
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 38 DDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ +DA+ LH AA G ++ + LL+ DV+ D G TPL
Sbjct: 27 DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLR 85
Query: 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
AA GH E + L ++GA+ G T LH +A G++E++ LL GA+V+++
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 156 G-TPLIWAAGHGQQEAVKVL 174
G T + +G ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ D G TPL AA GH E + L +HGA+ +
Sbjct: 21 AARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
G+T LH +A IG++E++ LL GA+V++ G TPL AA G E V+VLL+H A+
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 182 NAE 184
NA+
Sbjct: 140 NAQ 142
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G T LH +A G++E++ LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
G TPL AA G E V+VLL+H A+ NA
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNA----------------------------- 108
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA +G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 109 ---VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
L
Sbjct: 166 QKLN 169
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA +TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA IG EI++ LLK GAD N D G P+ +AA G+ E VE+
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G T LH +A G++E++ LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
G TPL AA G E V+VLL+H A+ NA
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNA----------------------------- 108
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA +G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 109 ---VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
L
Sbjct: 166 QKLN 169
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA +TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA IG EI++ LLK GAD N D G P+ +AA G+ E VE+
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ D G TPL AA GH E + L +HGA+
Sbjct: 21 AARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
G+T LH +A IG++E++ LL GA+V++ G TPL AA G E V+VLL+H A+
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 182 NAE 184
NA+
Sbjct: 140 NAQ 142
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 83/184 (45%), Gaps = 33/184 (17%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G T LH G++E++ LL A+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
+G TPL AA G E V+VLL++ A+ NA
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNA----------------------------- 108
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA+ G EI++ LLK GAD N D+ G+ ++ GN + EIL
Sbjct: 109 ---MDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
L
Sbjct: 166 QKLN 169
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA ITPL V G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 213 XXXXXXXXX-TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLK GAD N D G P+ +AA G+ E VE+
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 272 LF 273
L
Sbjct: 132 LL 133
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 38 DDQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ + G LH G ++ + LL+ DV+ D+ G TPL
Sbjct: 27 DDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK-YAADVNASDKSGWTPLH 85
Query: 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
AA +GH E + L ++GA+ G T LH +A G++E++ LL GA+V+++
Sbjct: 86 LAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKF 145
Query: 156 G 156
G
Sbjct: 146 G 146
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPK-- 284
AA G + ++ L+ GAD N D G P+ + G+ E +E+L ++ + K
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 285 WT 286
WT
Sbjct: 81 WT 82
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
D G L+ AA GQ + V++L+ + A+ NA ++ +TPL A A G L +++L++
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 214 XXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA G EI++ LLK GAD N D G P+ +AA G E VE+L
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 273 F 273
Sbjct: 125 L 125
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 83/180 (46%), Gaps = 33/180 (18%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AA G + + L +GA+ + G T LH +A G +E++ LL GA+V++
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
AG TPL AA G E V+VLL+H A+ NA AG
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR-----------AG------------- 105
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA G EI++ LLK GAD N D G ++ +G + EIL
Sbjct: 106 --------WTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AA G+ D + L+ DV+ D++G TPL AA G E + L ++GA+ +
Sbjct: 13 AAAAGQDDEVRILMAN-GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
G T LH +A G++E++ LL GA+V++ AG TPL AA GQ E V+VLL+H A+
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Query: 182 NAETEDNITPL 192
NA+ +T
Sbjct: 132 NAQDALGLTAF 142
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 29 LLKKIAKQLDDQGKGLSKTVADIK--DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ 86
LL+ A DD+ + L AD+ D N LH AA G+ ++ + LL+ DV+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN-GADVNAS 68
Query: 87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG 146
D G TPL AA GH E + L +HGA+ G T LH +A G +E++ LL G
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 147 AEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
A+V+++ G T + GQ++ ++L
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA+ E +TPL A A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA IG EI + LLK GAD N D+ G+ ++ GN + EI
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131
Query: 272 LFPLT 276
L L
Sbjct: 132 LQKLN 136
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ +DE G TPL A GH E + L ++GA+ +
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
G T LH +A IG++E+ LL GA+V+++ G T + G+G ++ ++L
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G T L+ + G++E++ LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
G TPL AA G E +VLL+H A+ NA+
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 98/223 (43%), Gaps = 18/223 (8%)
Query: 58 GALHFAA-REGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP 116
GA+ AA G T+ LLE D++ + DG T L A + + K+L E+GAN
Sbjct: 41 GAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
Query: 117 TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPL-----IWAAGHGQQEA 170
P N G LH +A G +++ YL+S+GA V + S+ TPL Q E
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159
Query: 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADI 230
+ ++ A E + + +G + T LH+AA
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHIN----------DVRHAKSGGTALHVAAAK 209
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
G TE++K L++A D N+ D DG P+ AA G EA IL
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 45 SKTVADIKDANKRG-ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT 103
S + D++ A G ALH AA +G T+V K L++ + DV+ +D DG TPL AA G
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKE 245
Query: 104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
E + L E+ + + +G TA + + ++L YL
Sbjct: 246 EACRILVENLCDMEAVNKVGQTAF----DVADEDILGYL 280
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 49 ADIKDANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
ADI AN G ALH A + D+ K+L+E +++ D +G PL AA G+ + A
Sbjct: 64 ADINYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIA 122
Query: 107 KYLFEHGANPTIPSNLGATALH---------------HSAGIGNIELLT----------- 140
+YL GA+ ++ G T L + G+ +IE
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV-DIEAARKEEERIMLRDA 181
Query: 141 -YLLSKG--AEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
L+ G +V GT L AA G E +K+L++ + N + D TPL +A
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241
Query: 198 AGSLTCLDLLIQ 209
G +L++
Sbjct: 242 WGKEEACRILVE 253
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 31/169 (18%)
Query: 39 DQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL-- 94
D K L + A+I + G LH AA G D+ +YL+ + V + +G+TPL
Sbjct: 87 DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDI 145
Query: 95 --------------------LHAARQGH-----TETAKYLFEHGANPTIPSNLGATALHH 129
+ AAR+ + ++L N + G TALH
Sbjct: 146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHV 205
Query: 130 SAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEH 177
+A G E+L L+ +V+ + D TPL AA G++EA ++L+E+
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA ED +TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLK GAD N D+ G+ ++ GN + EI
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
L L
Sbjct: 132 LQKLN 136
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ DEDG TPL AA+ GH E + L ++GA+ N
Sbjct: 21 AARAGQDDEVRILMAN-GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
G T LH +A G++E++ LL GA+V+++ G T + +G ++ ++L
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G T LH +A +G++E++ LL GA+V++E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
+ G TPL AA G E V+VLL+H A+ NA+
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ 109
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 62/109 (56%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
+G+E F++ DY A+ YT+AI +P DA L SNR+ C+ +L + + AL D + C L P
Sbjct: 22 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448
+ K R+ AAL ++ + +A + + + + LD KE ++ + A
Sbjct: 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ A GQ + V++L+ + A+ NA + +TPL A G L +++L++
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA +G EI++ LL+ GAD N D+ G+ ++ GN + EI
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
L L
Sbjct: 132 LQKLN 136
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
A R G+ D + L+ DV+ D+ G TPL AA++GH E + L +HGA+ +
Sbjct: 21 ATRAGQDDEVRILMAN-GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSW 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
G T LH +A +G++E++ LL GA+V+++ G T + +G ++ ++L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL A R G + + L +GA+ + G T LH +A G++E++ LL GA+V++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
G TPL AA G E V+VLLE+ A+ NA+
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKW 285
G + ++ L+ GAD N D+ G P+ +AA RG+ E VE+L ++ + W
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSW 79
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
N R LH AAR G +V K LLE DV+ +D++G TPL AAR GH E K L E GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
+ G T LH +A G++E++ LL GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
+G TPL AAR GH E K L E GA+ G T LH +A G++E++ LL GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLE 176
V+++ G TPL AA +G E VK+LLE
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 32/117 (27%)
Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXX 216
TPL AA +G E VK+LLE A+ NA+ ++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNG---------------------------- 35
Query: 217 XXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
TPLH+AA G E++K LL+AGAD N D++G+ P+ +AA G+ E V++L
Sbjct: 36 ----RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
+ KD N R LH AAR G +V K LLE DV+ +D++G TPL AAR GH E K L
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 110 FEHGA 114
E GA
Sbjct: 88 LEAGA 92
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
G T LH +A G++E++ LL GA+V+++ G TPL AA +G E VK+LLE A+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQ 209
NA+ ++ TPL A G L + LL++
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ A GQ + V++L+ + A+ NA + +TPL A G L +++L++
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA +G EI++ LL+ GAD N D+ G+ ++ GN + EI
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
L L
Sbjct: 132 LQKLN 136
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
A R G+ D + L+ DV+ D+ G TPL AA++GH E + L +HGA+
Sbjct: 21 ATRAGQDDEVRILMAN-GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
G T LH +A +G++E++ LL GA+V+++ G T + +G ++ ++L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL A R G + + L +GA+ + G T LH +A G++E++ LL GA+V++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
G TPL AA G E V+VLLE+ A+ NA+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ A GQ + V++L+ + A+ NA + +TPL A G L +++L++
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA +G EI++ LL+ GAD N D+ G+ ++ GN + EI
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
L L
Sbjct: 132 LQKLN 136
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
A R G+ D + L+ DV+ D+ G TPL AA++GH E + L +HGA+
Sbjct: 21 ATRAGQDDEVRILMAN-GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
G T LH +A +G++E++ LL GA+V+++ G T + +G ++ ++L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL A R G + + L +GA+ + G T LH +A G++E++ LL GA+V++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
G TPL AA G E V+VLLE+ A+ NA+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 1/201 (0%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
+H AA G + L+ + V+ D +PL A GH K L +HGA
Sbjct: 7 MHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
+ T L ++ G+ + + LL GA V ESD +P+ AA G E V L+ +
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 125
Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCL 239
N + + TPL A C+ L++ +PLH A S E+ L
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLL 185
Query: 240 LKAGADPNVTDEDGQKPIQVA 260
+ GAD + +G++P+++
Sbjct: 186 MDFGADTQAKNAEGKRPVELV 206
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNA 183
+ +H +A G+ L L+S+G V+ +D +PL A G VK+LL+H A N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
T D TPL +A +GS C++LL+Q +P+H AA G E + L+ G
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
+ + P+ +A R V+ L
Sbjct: 125 GNIDHKISHLGTPLYLACENQQRACVKKLL 154
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 5/184 (2%)
Query: 92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
+P+ AA GH + + L G I + + LH + G++ + LL GA+V+
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 152 -ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
+D TPL A G + V +LL+H A+ E+ D +P+ A G + C++ LI
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY 123
Query: 211 XXXX-XXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
TPL++A + +K LL++GAD V GQ A AR E +
Sbjct: 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD--VNQGKGQDSPLHAVARTASEEL 181
Query: 270 EILF 273
L
Sbjct: 182 ACLL 185
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 5/225 (2%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
+H AA G + L+ + V+ D +PL A GH K L +HGA
Sbjct: 63 MHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
+ T L ++ G+ + + LL GA V ESD +P+ AA G E V L+ +
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 181
Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCL 239
N + + TPL A C+ L++ +PLH S E+ L
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLL 241
Query: 240 LKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPK 284
+ GAD + +G++P+++ + LF L E S+PK
Sbjct: 242 MDFGADTQAKNAEGKRPVELVPP---ESPLAQLF-LEREGASLPK 282
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNA 183
+ +H +A G+ L L+S+G V+ +D +PL A G VK+LL+H A N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
T D TPL +A +GS C++LL+Q +P+H AA G E + L+ G
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 180
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
+ + P+ +A R V+ L
Sbjct: 181 GNIDHKISHLGTPLYLACENQQRACVKKLL 210
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
+P+ AA GH + + L G I + + LH + G++ + LL GA+V+
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 152 -ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
+D TPL A G + V +LL+H A+ E+ D +P+ A G + C++ LI
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY 179
Query: 211 XXXX-XXXXXXXTPLHIAADIGSTEIIKCLLKAGADPN 247
TPL++A + +K LL++GAD N
Sbjct: 180 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NAE + +TPL A L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+ A G EI++ LLK GAD N D+ G+ ++ GN + EI
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
L L
Sbjct: 132 LQKLN 136
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ +G T LH +A ++E++ LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
G TPL A +G E V+VLL+H A+ NA+
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ +D+ G TPL AA H E + L ++GA+ +
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
G T LH A G++E++ LL GA+V+++ G T + +G ++ ++L
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 120/306 (39%), Gaps = 36/306 (11%)
Query: 3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHF 62
P A L + + L AA +GN + L + L+ D K LH
Sbjct: 13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN--------VNCHASDGRKSTPLHL 64
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AA + + + LL+ DV +D+ G PL +A GH E + L +HGA
Sbjct: 65 AAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123
Query: 123 GATALHHSAGIGNIELLTYLLSKGAE---VDSESDA-------------------GTPLI 160
T LH +A +E+ + LLS GA+ V+ + G L+
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183
Query: 161 WAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA---GSLTCLDLLIQXXXXXXXX 217
AA VK L + + + T L AVA+ +LL++
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243
Query: 218 XX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276
TPLH+AA+ ++++ L K GA N D GQ + AA G+ + +L
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 277 SEDPSI 282
S DPSI
Sbjct: 304 S-DPSI 308
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 103/262 (39%), Gaps = 36/262 (13%)
Query: 49 ADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
AD+ +K G LH A G +V + LL+ V+ D TPL AA + E
Sbjct: 82 ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVC 140
Query: 107 KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY------LLSKGAEVD---------- 150
L HGA+PT+ + G +A+ + E LTY LL E D
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200
Query: 151 ---------SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL 201
S A + + +++ ++LL AN N + +D +TPL A
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN 260
Query: 202 TCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
+++L + T LH AA G + + LL G+DP++ G A
Sbjct: 261 DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG----FTA 316
Query: 261 AARGNREAVEIL---FPLTSED 279
A GN +IL P+ + D
Sbjct: 317 AQMGNEAVQQILSESTPMRTSD 338
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 82 DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
+V+ +++D TPL AA + H + + L +HGA +LG TALH +A G+++
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRL 298
Query: 142 LLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
LLS G++ S G + A EAV+ +L + P T D LL A AG
Sbjct: 299 LLSYGSDPSIISLQG----FTAAQMGNEAVQQILS-ESTP-MRTSDVDYRLLEASKAG 350
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ NA TPL A L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 213 XXXXXXXX-XTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA G EI++ LLK GAD N D+ G+ ++ GN + EI
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
L L
Sbjct: 132 LQKLN 136
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ D G TPL AA H E + L +HGA+ N
Sbjct: 21 AARAGQDDEVRILMAN-GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
G+T LH +A G++E++ LL GA+V+++ G T + +G ++ ++L
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
LL AAR G + + L +GA+ G T LH +A ++E++ LL GA+V++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE 184
+D TPL AA G E V+VLL+H A+ NA+
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQ 109
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 69 TDVCKYLLEELKLDVDTQDEDGE-TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127
D+ + LLE +V+ Q+E+G TPL +A + + + L HGA+P + GAT
Sbjct: 38 VDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN---- 182
+A G+++LL LSKGA+V+ G T + AA +G+ +A+K L + AN N
Sbjct: 97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 156
Query: 183 -AETEDNI-----TPLLSAVAAGSLTCLDLLIQXXXXXXXX---XXXXTPLH--IAADIG 231
E ++ + T L+ A G + L +L+ +H +++D
Sbjct: 157 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 216
Query: 232 STE-IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
E I LL GAD NV E G+ P+ +A + + V+ L
Sbjct: 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 21/215 (9%)
Query: 56 KRGALHF--AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG 113
K GA F AA G + K L + DV+ D G T + AA G + K+L++ G
Sbjct: 90 KNGATPFILAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 114 ANPTIPSNL----------GATALHHSAGIGNIELLTYLLSK-GAEVDSESDAG-TPLIW 161
AN + GATAL +A G++E+L LL + GA+V++ + G LI
Sbjct: 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 208
Query: 162 A---AGHGQQEAV-KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX 217
A + EA+ +LL+H A+ N E TPL+ AV L + L++
Sbjct: 209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 268
Query: 218 XXX--XTPLHIAADIGSTEIIKCLLKAGADPNVTD 250
T L +A ++ +I + L K GA + D
Sbjct: 269 TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 303
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 34/141 (24%)
Query: 135 NIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
+++L+ LL GA V+ + + G TPL A +++ V++LL H A+P ++ TP
Sbjct: 37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 193 LSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
+ +AA GS +++K L GAD N D
Sbjct: 97 I--------------------------------LAAIAGSVKLLKLFLSKGADVNECDFY 124
Query: 253 GQKPIQVAAARGNREAVEILF 273
G AA G +A++ L+
Sbjct: 125 GFTAFMEAAVYGKVKALKFLY 145
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 15/157 (9%)
Query: 18 FLNAACTGNLDLLKKIAKQLDDQGKGLS---KTVADIKDANKRGA--LHFAAREGKTDVC 72
F+ AA G + LK + K+ G ++ KT D + K GA L AA +G +V
Sbjct: 129 FMEAAVYGKVKALKFLYKR----GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 184
Query: 73 KYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK----YLFEHGANPTIPSNLGATALH 128
K LL+E+ DV+ D G L+HA + L +HGA+ + G T L
Sbjct: 185 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 244
Query: 129 HSAGIGNIELLTYLLSK-GAEV-DSESDAGTPLIWAA 163
+ ++ L+ LL + E+ D++SD T L+ A
Sbjct: 245 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 281
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 69 TDVCKYLLEELKLDVDTQDEDGE-TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127
D+ + LLE +V+ Q+E+G TPL +A + + + L HGA+P + GAT
Sbjct: 18 VDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN---- 182
+A G+++LL LSKGA+V+ G T + AA +G+ +A+K L + AN N
Sbjct: 77 LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Query: 183 -AETEDNI-----TPLLSAVAAGSLTCLDLLIQXXXXXXXX---XXXXTPLH--IAADIG 231
E ++ + T L+ A G + L +L+ +H +++D
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Query: 232 STE-IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
E I LL GAD NV E G+ P+ +A + + V+ L
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 21/215 (9%)
Query: 56 KRGALHF--AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG 113
K GA F AA G + K L + DV+ D G T + AA G + K+L++ G
Sbjct: 70 KNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 114 ANPTIPSNL----------GATALHHSAGIGNIELLTYLLSK-GAEVDSESDAG-TPLIW 161
AN + GATAL +A G++E+L LL + GA+V++ + G LI
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188
Query: 162 A---AGHGQQEAVK-VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX 217
A + EA+ +LL+H A+ N E TPL+ AV L + L++
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248
Query: 218 XXX--XTPLHIAADIGSTEIIKCLLKAGADPNVTD 250
T L +A ++ +I + L K GA + D
Sbjct: 249 TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 34/141 (24%)
Query: 135 NIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
+++L+ LL GA V+ + + G TPL A +++ V++LL H A+P ++ TP
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 193 LSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
L +AA GS +++K L GAD N D
Sbjct: 77 L--------------------------------LAAIAGSVKLLKLFLSKGADVNECDFY 104
Query: 253 GQKPIQVAAARGNREAVEILF 273
G AA G +A++ L+
Sbjct: 105 GFTAFMEAAVYGKVKALKFLY 125
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 15/157 (9%)
Query: 18 FLNAACTGNLDLLKKIAKQLDDQGKGLS---KTVADIKDANKRGA--LHFAAREGKTDVC 72
F+ AA G + LK + K+ G ++ KT D + K GA L AA +G +V
Sbjct: 109 FMEAAVYGKVKALKFLYKR----GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164
Query: 73 KYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK----YLFEHGANPTIPSNLGATALH 128
K LL+E+ DV+ D G L+HA + L +HGA+ + G T L
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224
Query: 129 HSAGIGNIELLTYLLSK-GAEV-DSESDAGTPLIWAA 163
+ ++ L+ LL + E+ D++SD T L+ A
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
+G+E FK+ DY A+ Y +A+ DP +A L SNR+ C +L + + AL D C L
Sbjct: 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
+ K R+ A L + ++ +A A+ + + +DP N+E
Sbjct: 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
D E TPL +AAG+ + V+ LL+H A+ +A+ + + PL +A + G +LL++
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Query: 210 XXXXXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
TPLH AA G EI K LL+ GADP + DG P+ +
Sbjct: 99 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Query: 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYL 75
+Q L AA G+++ +KK+ S DI + + LHFAA + V +YL
Sbjct: 12 RQLLEAAKAGDVETVKKLCTVQ-------SVNCRDI-EGRQSTPLHFAAGYNRVSVVEYL 63
Query: 76 LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
L+ DV +D+ G PL +A GH E A+ L +HGA + T LH +A G
Sbjct: 64 LQH-GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 122
Query: 136 IELLTYLLSKGAE-VDSESDAGTPL 159
E+ LL GA+ D TPL
Sbjct: 123 YEICKLLLQHGADPTKKNRDGNTPL 147
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXX 221
A G G EA + LLE + ET + + S + C D+
Sbjct: 2 AMGSGNSEADRQLLEAAKAGDVETVKKLCTVQS------VNCRDI----------EGRQS 45
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
TPLH AA +++ LL+ GAD + D+ G P+ A + G+ E E+L
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 97
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
D E TPL +AAG+ + V+ LL+H A+ +A+ + + PL +A + G +LL++
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 210 XXXXXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
TPLH AA G EI K LL+ GADP + DG P+ +
Sbjct: 97 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 8 ALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG 67
A+ E +Q L AA G+++ +KK+ S DI + + LHFAA
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQ-------SVNCRDI-EGRQSTPLHFAAGYN 53
Query: 68 KTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127
+ V +YLL+ DV +D+ G PL +A GH E A+ L +HGA + T L
Sbjct: 54 RVSVVEYLLQH-GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 112
Query: 128 HHSAGIGNIELLTYLLSKGAE-VDSESDAGTPL 159
H +A G E+ LL GA+ D TPL
Sbjct: 113 HEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 192 LLSAVAAGSLTCLDLL--IQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVT 249
LL A AG + + L +Q TPLH AA +++ LL+ GAD +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 250 DEDGQKPIQVAAARGNREAVEILF 273
D+ G P+ A + G+ E E+L
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLV 95
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
D E TPL +AAG+ + V+ LL+H A+ +A+ + + PL +A + G +LL++
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Query: 210 XXXXXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
TPLH AA G EI K LL+ GADP + DG P+ +
Sbjct: 101 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 8 ALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG 67
+L E +Q L AA G+++ +KK+ S DI + + LHFAA
Sbjct: 6 SLGNSEADRQLLEAAKAGDVETVKKLCTVQ-------SVNCRDI-EGRQSTPLHFAAGYN 57
Query: 68 KTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127
+ V +YLL+ DV +D+ G PL +A GH E A+ L +HGA + T L
Sbjct: 58 RVSVVEYLLQH-GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 116
Query: 128 HHSAGIGNIELLTYLLSKGAE-VDSESDAGTPL 159
H +A G E+ LL GA+ D TPL
Sbjct: 117 HEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 192 LLSAVAAGSLTCLDLL--IQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVT 249
LL A AG + + L +Q TPLH AA +++ LL+ GAD +
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 250 DEDGQKPIQVAAARGNREAVEILF 273
D+ G P+ A + G+ E E+L
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLV 99
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
++ DE+G TPL+ AA G ++L ++GA+P + +AL + G +++ L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 143 LSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
L G +V+ + + GTPL++A + VK+LLE A+P ET+ + AVA G
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
+ AL A +G TD+ K LL+ +DV+ D +G TPLL+A H + K L E GA+
Sbjct: 85 RESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Query: 116 PTIPSNLGATALHHSAGIG 134
PTI ++ G ++ + +G
Sbjct: 144 PTIETDSGYNSMDLAVALG 162
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
L+ GAN + ++H A G + L + + ++ + G TPL+WAA HGQ
Sbjct: 13 LYFQGAN--------SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ 64
Query: 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXX-XXXTPLHI 226
V+ LL++ A+P + + L A + G + +L+ TPL
Sbjct: 65 IAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 124
Query: 227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
A + +K LL++GADP + + G + +A A G R +++
Sbjct: 125 AVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
++ DE+G TPL+ AA G ++L ++GA+P + +AL + G +++ L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 143 LSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
L G +V+ + + GTPL++A + VK+LLE A+P ET+ + AVA G
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
+ AL A +G TD+ K LL+ +DV+ D +G TPLL+A H + K L E GA+
Sbjct: 69 RESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Query: 116 PTIPSNLGATALHHSAGIG 134
PTI ++ G ++ + +G
Sbjct: 128 PTIETDSGYNSMDLAVALG 146
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 151 SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
++ + TPL+WAA HGQ V+ LL++ A+P + + L A + G + +L+
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 91
Query: 211 XXXXXXXX-XXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
TPL A + +K LL++GADP + + G + +A A G R
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 151
Query: 270 EIL 272
+++
Sbjct: 152 QVI 154
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
+G++A + A+ Y++AI DP + L SNRS + + G + A D L+P
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 69
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
DW K R+ AAL L +F+EA + EG+ + N +L
Sbjct: 70 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
++ DE+G TPL+ AA G ++L ++GA+P + +AL + G +++ L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 143 LSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
L G +V+ + + GTPL++A + VK+LLE A+P ET+ + AVA G
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
+ AL A +G TD+ K LL+ +DV+ D +G TPLL+A H + K L E GA+
Sbjct: 67 RESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Query: 116 PTIPSNLGATALHHSAGIG 134
PTI ++ G ++ + +G
Sbjct: 126 PTIETDSGYNSMDLAVALG 144
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 151 SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
++ + TPL+WAA HGQ V+ LL++ A+P + + L A + G + +L+
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 89
Query: 211 XXXXXXXX-XXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
TPL A + +K LL++GADP + + G + +A A G R
Sbjct: 90 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 149
Query: 270 EIL 272
+++
Sbjct: 150 QVI 152
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 59 ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
++H A +G+ D K L + V+ DE G TPL+ A+ G ET ++L E GA+P I
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEH 177
+ +AL ++ G +++ LL + +++ + + GTPL++A + V+ LL
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124
Query: 178 HANPNAETEDNITPLLSAVAAG 199
A+ E + TP+ AVA G
Sbjct: 125 GADLTTEADSGYTPMDLAVALG 146
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANP 181
+ ++H A G ++ L L KG + ++ D TPLIWA+ G+ E V+ LLE A+P
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQX-XXXXXXXXXXXTPLHIAADIGSTEIIKCLL 240
+ ++ + L A G + LL++ TPL A + ++ LL
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122
Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
GAD + G P+ +A A G R+ +++
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 59 ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
++H A +G+ D K L + V+ DE G TPL+ A+ G ET ++L E GA+P I
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEH 177
+ +AL ++ G +++ LL + +++ + + GTPL++A + V+ LL
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLAR 124
Query: 178 HANPNAETEDNITPLLSAVAAG 199
A+ E + TP+ AVA G
Sbjct: 125 GADLTTEADSGYTPMDLAVALG 146
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANP 181
+ ++H A G ++ L L KG + ++ D TPLIWA+ G+ E V+ LLE A+P
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQX-XXXXXXXXXXXTPLHIAADIGSTEIIKCLL 240
+ ++ + L A G + LL++ TPL A + ++ LL
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALL 122
Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
GAD + G P+ +A A G R+ +++
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
L V+ +DG +PL AA G + L +HGAN + A LH + G+ +++
Sbjct: 77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVK 136
Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
LL A+ + + +G TPLI+A G E V +LL+H A+ NA T L AV
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK 196
Query: 200 SLTCLDLLI 208
+ ++LL+
Sbjct: 197 HVFVVELLL 205
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
A ++A++ LH A ++G V K LL+ + +D G TPL++A GH E
Sbjct: 112 AGARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVAL 170
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
L +HGA+ +N G TALH + ++ ++ LL GA V
Sbjct: 171 LLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 33/128 (25%)
Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
G V S+ D +PL AA HG+ + + +LL+H AN A D
Sbjct: 78 GVNVTSQ-DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQ----------------- 119
Query: 206 LLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
PLH+A G +++KCLL + A PN D G P+ A + G+
Sbjct: 120 ---------------AVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH 164
Query: 266 REAVEILF 273
E V +L
Sbjct: 165 HELVALLL 172
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
LH AA G+ D+ LL+ + ++ D PL A +QGH + K L + A P
Sbjct: 90 LHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK 148
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
G T L ++ G+ EL+ LL GA +++ ++ G T L A V++LL H
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208
Query: 179 AN 180
A+
Sbjct: 209 AS 210
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 242 AGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
+G NVT +DG P+ VAA G + + +L
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLL 106
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
+ ++ FK KDY A+ Y+QAI+ +PS+A NRSL ++R +AL DA L
Sbjct: 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 71
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
+ K YR A+ L KF A + V + P +K+ ++E
Sbjct: 72 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
+DG TPL +AA+ GH E K L GA+ S G T LH +A G+ E++ LL+KGA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 148 EVDSES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAET 185
+V++ S D TP A +G E VK+L A+ NA +
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
LH AA+ G + K LL + DV+ + +DG TPL AA+ GH E K L GA+
Sbjct: 13 LHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
S G T H + G+ E++ L +KGA+V++ S
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 51/119 (42%), Gaps = 32/119 (26%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
D TPL AA +G E VK LL A+ NA ++D
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG------------------------- 42
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA G EI+K LL GAD N +DG P +A G+ E V++L
Sbjct: 43 -------NTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 7 HALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGA--LHFAA 64
H ++ NAA G+ + +KK+ LSK AD+ +K G LH AA
Sbjct: 2 HMWGSKDGNTPLHNAAKNGHAEEVKKL----------LSKG-ADVNARSKDGNTPLHLAA 50
Query: 65 REGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
+ G ++ K LL + DV+ + +DG TP A + GH E K L GA
Sbjct: 51 KNGHAEIVKLLLAK-GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
+ ++ FK KDY A+ Y+QAI+ +PS+A NRSL ++R +AL DA L
Sbjct: 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444
+ K YR A+ L KF A + V + P +K+ ++E
Sbjct: 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L + A+ NA TPL A G L +++L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 213 -XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
TPLH+AA EI++ LLK GAD N D+ G+ ++ GN + EI
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPL 275
L L
Sbjct: 132 LQKL 135
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G T LH +A +G++E++ LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
+ G TPL AA E V+VLL+H A+ NA+
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L DV+ D G TPL AA GH E + L ++GA+ N
Sbjct: 21 AARAGQDDEVRILTAN-GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
G T LH +A ++E++ LL GA+V+++ G
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 15/197 (7%)
Query: 15 VQQFLNAACTGNL--DLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVC 72
+Q++L AC + +L+++ L V +I D+N ALH++ V
Sbjct: 68 LQEWLRLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVV 127
Query: 73 KYLLEELKLDVDTQDEDGETPLLHAA-----RQGHTETAKYLFEHGANPTIPSNLGATAL 127
+ LL+ VD Q+ G +P++ A Q ET LF G S G TAL
Sbjct: 128 QQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTAL 187
Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET- 185
+ G ++++ LL+ A+V+ + D G T L+ A HG +E +LL A P+ +
Sbjct: 188 MLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL---AVPSCDIS 244
Query: 186 ---EDNITPLLSAVAAG 199
D T L+ A+ AG
Sbjct: 245 LTDRDGSTALMVALDAG 261
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 37/195 (18%)
Query: 123 GATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN 180
G TALH+S N ++ LL G +VD ++ AG +P++ A
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL---------------- 154
Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLL 240
+T+D+I +L G++ T L +A G +++K LL
Sbjct: 155 ATLKTQDDIETVLQLFRLGNIN-----------AKASQAGQTALMLAVSHGRVDVVKALL 203
Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYM------ 294
AD NV D+DG + A G++E +L + S D S+ DG M
Sbjct: 204 ACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR--DGSTALMVALDAG 261
Query: 295 QSESGKQLEETRNLK 309
QSE L N+K
Sbjct: 262 QSEIASMLYSRMNIK 276
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
+++D + AL A G ++ LL D+ D DG T L+ A G +E A
Sbjct: 209 VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASM 268
Query: 109 LF 110
L+
Sbjct: 269 LY 270
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
A+ +D R LH A V + LL +++ + DG TPL+ AAR +
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
L A+ N G TALH +A + N E + LL A D++ D TPL AA G
Sbjct: 137 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 196
Query: 168 QEAVKVLLEHHAN 180
EA K LL++ AN
Sbjct: 197 YEASKALLDNFAN 209
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 137 ELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
++++ LL++GAE+++ D T L AA + +A K LL+ A+ N++ TPL +
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 90
Query: 195 AVAAGSLTCLDLLIQXXXXXXXXXXX--XTPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
AVAA ++ +L++ TPL +AA + +++ L+ A AD N D
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 150
Query: 253 GQKPIQVAAARGNREAVEILF 273
G+ + AAA N EAV IL
Sbjct: 151 GKTALHWAAAVNNTEAVNILL 171
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 107/249 (42%), Gaps = 39/249 (15%)
Query: 26 NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDT 85
N D ++ L QG L+ T+ D +LH AAR + D K LL+ D ++
Sbjct: 25 NEDSTAQVISDLLAQGAELNATM----DKTGETSLHLAARFARADAAKRLLDA-GADANS 79
Query: 86 QDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLS 144
QD G TPL A + L + A N + G T L +A + ++ L++
Sbjct: 80 QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 145 KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
A++++ ++G T L WAA EAV +LL HHAN +A+ + + TPL
Sbjct: 140 ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF---------- 189
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
+AA GS E K LL A+ +TD + P VA+ R
Sbjct: 190 ----------------------LAAREGSYEASKALLDNFANREITDHMDRLPRDVASER 227
Query: 264 GNREAVEIL 272
+ + V +L
Sbjct: 228 LHHDIVRLL 236
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
D GET L AAR ++ AK L E A+ I N+G T LH + + LL ++
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
++D+ D TPLI AA + ++ L+ HA+ NA + + L +A
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 138
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
+ LL TPL +AA GS E K LL A+ ++TD + P +A R
Sbjct: 139 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 198
Query: 264 GNREAVEIL 272
+ + V +L
Sbjct: 199 MHHDIVRLL 207
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Query: 39 DQGKGLSKTVAD--IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH 96
D K L + AD I+D R LH A V + LL D+D + DG TPL+
Sbjct: 36 DAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLIL 95
Query: 97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA- 155
AAR + L A+ +LG +ALH +A + N++ LL GA D +++
Sbjct: 96 AARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKE 155
Query: 156 GTPLIWAAGHGQQEAVKVLLEHHAN 180
TPL AA G E KVLL+H AN
Sbjct: 156 ETPLFLAAREGSYETAKVLLDHFAN 180
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI-------PSNLGATALHH 129
D Q+ ETPL AAR+G ETAK L +H AN I P ++ +HH
Sbjct: 149 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 201
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
+ ++ FK KDY A+ Y+QAI+ +PS+A NRSL ++R +AL DA L
Sbjct: 27 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDK 86
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444
+ K YR A+ L KF A + V + P +K+ ++E
Sbjct: 87 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 131
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
D GET L AAR ++ AK L E A+ I N+G T LH + + L+ ++
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
++D+ D TPLI AA + ++ L+ HA+ NA + + L +A
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
+ LL TPL +AA GS E K LL A+ ++TD + P +A R
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201
Query: 264 GNREAVEIL 272
+ + V +L
Sbjct: 202 MHHDIVRLL 210
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
A+I+D R LH A V + L+ D+D + DG TPL+ AAR +
Sbjct: 51 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 110
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-GTPLIWAAGHGQ 167
L A+ +LG +ALH +A + N++ LL GA D +++ TPL AA G
Sbjct: 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 170
Query: 168 QEAVKVLLEHHAN 180
E KVLL+H AN
Sbjct: 171 YETAKVLLDHFAN 183
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI-------PSNLGATALHH 129
D Q+ ETPL AAR+G ETAK L +H AN I P ++ +HH
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 204
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 324 PEVRPEIXXXXXXXXXR--GDEAFKQKDYLMAVDAYTQAIDFD--PSD-ATLLSNRSLCW 378
PE RP R G+E FK DY A+ AYTQA+ D P D A L NR+ C
Sbjct: 16 PEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH 75
Query: 379 IRLGQAEHALADAKACRALRPDWP--KACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
++L ++ A+ +A +A+ D KA YR AL L + D+A V+L+P+NK
Sbjct: 76 LKL--EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
Query: 437 ELVFAFR 443
A R
Sbjct: 134 VFQEALR 140
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 14/194 (7%)
Query: 80 KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL 139
KL+ D++ + AAR+G T+ + L E G +PTI + G TALH + G ++
Sbjct: 10 KLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA 69
Query: 140 TYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
YL S G EV S P+ A + + V L+E E +
Sbjct: 70 KYLASVG-EVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLN--------- 119
Query: 200 SLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGS--TEIIKCLLKAGADPNVTDEDGQKPI 257
C + + T LH +G E IK L++ GA P D+ + P+
Sbjct: 120 --ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPL 177
Query: 258 QVAAARGNREAVEI 271
A NREA+++
Sbjct: 178 XRAXEFRNREALDL 191
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 92/232 (39%), Gaps = 33/232 (14%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
+H AAR+G+TD + L+E + Q+ G T L A + G +TAKYL G ++
Sbjct: 24 IHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW 82
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAE-------VDSESD---------------AGT 157
G +H + +L+ L+ E + +E D T
Sbjct: 83 H--GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQT 140
Query: 158 PLIWAAGHGQQ--EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXX 215
L W G G + E +K+L++ A+P A+ + + TPL A + LDL
Sbjct: 141 ALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKS 200
Query: 216 X------XXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
+ LH A I ++ ++ G D N D + P+ ++
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSV 252
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
D GET L AAR ++ AK L E A+ I N+G T LH + + L+ ++
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
++D+ D TPLI AA + ++ L+ HA+ NA + + L +A
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
+ LL TPL +AA GS E K LL A+ ++TD + P +A R
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Query: 264 GNREAVEIL 272
+ + V +L
Sbjct: 234 MHHDIVRLL 242
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
A+I+D R LH A V + L+ D+D + DG TPL+ AAR +
Sbjct: 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 142
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD-AGTPLIWAAGHGQ 167
L A+ +LG +ALH +A + N++ LL GA D +++ TPL AA G
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202
Query: 168 QEAVKVLLEHHAN 180
E KVLL+H AN
Sbjct: 203 YETAKVLLDHFAN 215
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI-------PSNLGATALHH 129
D Q+ ETPL AAR+G ETAK L +H AN I P ++ +HH
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 236
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
A+I+D R LH A V + L+ D+D + DG TPL+ AAR +
Sbjct: 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 142
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD-AGTPLIWAAGHGQ 167
L A+ +LG +ALH +A + N++ LL GA D +++ TPL AA G
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202
Query: 168 QEAVKVLLEHHAN 180
E KVLL+H AN
Sbjct: 203 YETAKVLLDHFAN 215
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
D G T L AA ++ AK L E A+ I N+G T LH + + L+ ++
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
++D+ D TPLI AA + ++ L+ HA+ NA + + L +A
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
+ LL TPL +AA GS E K LL A+ ++TD + P +A R
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Query: 264 GNREAVEIL 272
+ + V +L
Sbjct: 234 MHHDIVRLL 242
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 26/183 (14%)
Query: 81 LDVDTQDEDGETPLLHAA-RQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL 139
+DV+ + DG TPL+ A+ G ET E A P + S+
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDA-PAVISDF----------------- 42
Query: 140 TYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
+ +GA + +++D T L AA + + +A K LLE A+ N + TPL +AV+
Sbjct: 43 ---IYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99
Query: 198 AGSLTCLDLLIQXXXXXXXXXXX--XTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQK 255
A + +LI+ TPL +AA + +++ L+ + AD N D+ G+
Sbjct: 100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 159
Query: 256 PIQ 258
+
Sbjct: 160 ALH 162
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI-------PSNLGATALHH 129
D Q+ ETPL AAR+G ETAK L +H AN I P ++ +HH
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 236
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
A+I+D R LH A V + L+ D+D + DG TPL+ AAR +
Sbjct: 84 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 143
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-GTPLIWAAGHGQ 167
L A+ +LG +ALH +A + N++ LL GA D +++ TPL AA G
Sbjct: 144 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 203
Query: 168 QEAVKVLLEHHAN 180
E KVLL+H AN
Sbjct: 204 YETAKVLLDHFAN 216
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
D GET L AAR ++ AK L E A+ I N+G T LH + + L+ ++
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
++D+ D TPLI AA + ++ L+ HA+ NA + + L +A
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 174
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
+ LL TPL +AA GS E K LL A+ ++TD + P +A R
Sbjct: 175 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 234
Query: 264 GNREAVEIL 272
+ + V +L
Sbjct: 235 MHHDIVRLL 243
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI-------PSNLGATALHH 129
D Q+ ETPL AAR+G ETAK L +H AN I P ++ +HH
Sbjct: 185 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 237
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPT 117
GAL AA + T K +L++ VD D +G TPL A E AK L + GA+
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 118 IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLL 175
+ +++ + ++ G E+L Y+L ++ + G LI AA G + VK+LL
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 176 EH-HANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTE 234
E + + + + T L+ AV L + L Q +
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVG---LREGNQLYQ------------------------D 159
Query: 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
I+K L++ GAD ++ D G+ + A +G E +IL
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279
TPL+IA EI K L+ GAD N+ + P A A+G E + + + D
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 33/190 (17%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
+ +D TPL+ A G L E+ G+TAL + + + LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 144 SKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
SKG+ V+++ +G TPL+W+ G E LLEH AN N + TPL+
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLI--------- 139
Query: 203 CLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
+A+ G +EI+K LL+ GAD + D G A
Sbjct: 140 -----------------------VASKYGRSEIVKKLLELGADISARDLTGLTAEASARI 176
Query: 263 RGNREAVEIL 272
G +E ++I
Sbjct: 177 FGRQEVIKIF 186
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFE 111
KD AL +A + + + + LL + +V+T+D G+TPL+ + G++E + +L E
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGS-NVNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Query: 112 HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA 170
HGAN + G T L ++ G E++ LL GA++ + G T A G+QE
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182
Query: 171 VKVLLE 176
+K+ E
Sbjct: 183 IKIFTE 188
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
+ +D+ R L A G + L+E ++ +D +G T L+ A + A+ L
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFD-KLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
G+N G T L S G E+ +LL GA V+ + G TPLI A+ +G+
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
E VK LLE A+ +A +T SA G + + +
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD-LLIQXXXXXX 215
TPL+ A G + A+ L+E+ + + T L+ AV L + LL +
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 216 XXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL 275
TPL + G +E+ LL+ GA+ N + +G+ P+ VA+ G E V+ L L
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 34 AKQLDDQGKGLSKTVADIKDANK---RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDG 90
AK L ++G + A KD+ K R ALH+AA+ + KYL+ E + D QDEDG
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDG 313
Query: 91 ETPLLHAARQGHTETAKYLFEHGA 114
+TP+ AA++G E YL + GA
Sbjct: 314 KTPIXLAAQEGRIEVVXYLIQQGA 337
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 32/200 (16%)
Query: 82 DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
DV+ D D TPL A YL + GA+PTI + +ALH +A + Y
Sbjct: 158 DVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVY 217
Query: 142 LLS----KGAEVDSESDAGTPLIWAA---GHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
L+ KG + + + T L A G Q + K+L+E A + +
Sbjct: 218 XLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDG--------- 268
Query: 195 AVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLL-KAGADPNVTDEDG 253
T LH AA + + I+K L+ + G++ + DEDG
Sbjct: 269 ---------------AARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDG 313
Query: 254 QKPIQVAAARGNREAVEILF 273
+ PI +AA G E V L
Sbjct: 314 KTPIXLAAQEGRIEVVXYLI 333
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G+E K +++ AV Y +AI+ +P++A NR+ + +LG A+ D + + P
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
+ KA R G AL L K EA + + + LDP+N+
Sbjct: 79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G+ A +K+Y A+D YTQA+ P++ LSNR+ + GQ E A DA+ + P
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGV 429
+ KA R G A + + A A+ +G+
Sbjct: 78 YSKAWSRLGLARFDMADYKGAKEAYEKGI 106
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 32/119 (26%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
D G L+ AA GQ + V++L+ + A+ NA+ +D TPL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPL--------------------- 39
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
H+AA G EI++ LLKAGAD N D+ G+ ++ GN + EIL
Sbjct: 40 -----------HLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV+ +D+DG TPL AAR+GH E + L + GA+
Sbjct: 9 AARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 123 GATALHHSAGIGNIELLTYLLSKGA 147
G TA S GN E L +L K A
Sbjct: 68 GKTAFDISIDNGN-EDLAEILQKAA 91
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G T LH +A G++E++ LL GA+V+++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 154 DAG-TPLIWAAGHGQQEAVKVL 174
G T + +G ++ ++L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 38 DDQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ +K G LH AAREG ++ + LL+ DV+ QD+ G+T
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTAFD 73
Query: 96 HAARQGHTETAKYL 109
+ G+ + A+ L
Sbjct: 74 ISIDNGNEDLAEIL 87
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 127 LHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE 184
L +A G + + L++ GA+V++ + D TPL AA G E V+VLL+ A+ NA+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
+ QD G +P+ AAR G +T K L EHGA+ +P GA +H + G+ ++++L
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 144 SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANP 181
++ ++ TPL A G Q+ V +L H P
Sbjct: 128 AESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 152 ESDAGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
E AG L AA G + V+ LL +P+A T L + + L+LL Q
Sbjct: 5 EVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQG 64
Query: 211 XXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
+P+H AA G + +K L++ GAD NV D G PI +A G+ V
Sbjct: 65 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 124
Query: 271 IL 272
L
Sbjct: 125 FL 126
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 35/177 (19%)
Query: 97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
AAR E + L +P + G TAL G+ + LL +GA + + +G
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQDTSG 74
Query: 157 T-PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXX 215
T P+ AA G + +KVL+EH A+ N G+L
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNVPD-----------GTGAL-------------- 109
Query: 216 XXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
P+H+A G T ++ L A +D + D G P+++A RG ++ V+IL
Sbjct: 110 -------PIHLAVQEGHTAVV-SFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AA G + LL + D + G+T L G T A L + GA+P +
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 73
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPN 182
G + +H +A G ++ L L+ GA+V+ G I A AV L ++ +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 133
Query: 183 AETEDNITPLLSAVAAGSLTCLDLL 207
+TPL A+ G+ +D+L
Sbjct: 134 RRDARGLTPLELALQRGAQDLVDIL 158
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Query: 20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL--HFAAREGKTDVCKYLLE 77
+AA TG LD LK + + AD+ + GAL H A +EG T V +L
Sbjct: 80 DAARTGFLDTLKVLVEH-----------GADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 78 ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP 116
E D+ +D G TPL A ++G + L H P
Sbjct: 129 E--SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
RG+ F K++ A+ Y AI+ DP++ SN S C+I G E + ++P
Sbjct: 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90
Query: 400 DWPKACYREGAALRLLEKFDEAA--------NAFYEGVTLDP 433
D KA R +A L F +A N ++G +++P
Sbjct: 91 DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 132
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 397 LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
L P++P Y G +L+ + A F + +L+PEN
Sbjct: 305 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
RG+ F K++ A+ Y AI+ DP++ SN S C+I G E + ++P
Sbjct: 27 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 86
Query: 400 DWPKACYREGAALRLLEKFDEAA--------NAFYEGVTLDP 433
D KA R +A L F +A N ++G +++P
Sbjct: 87 DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 128
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 397 LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
L P++P Y G +L+ + A F + +L+PEN
Sbjct: 301 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 339
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 67 GKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA 126
G T + LL++ + QD G +P+ AAR G +T K L EHGA+ +P GA
Sbjct: 46 GSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 127 LHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEH 177
+H + G+ ++++L ++ ++ TPL A G Q+ V +L H
Sbjct: 105 IHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 155 AGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
AG L AA G + V+ LL +P+A T L + + L+LL Q
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
+P+H AA G + +K L++ GAD NV D G PI +A G+ V L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AA G + LL + D + G+T L G T A L + GA+P +
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 67
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPN 182
G + +H +A G ++ L L+ GA+V+ G I A AV L ++ +
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 127
Query: 183 AETEDNITPLLSAVAAGSLTCLDLL 207
+TPL A+ G+ +D+L
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDIL 152
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
AAR E + L +P + G TAL G+ + LL +GA + + +G
Sbjct: 10 AARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQDTSG 68
Query: 157 T-PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXX 215
T P+ AA G + +KVL+EH A+ N P+ AV G + L
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHR 128
Query: 216 XXXXXXTPLHIAADIGSTEIIKCL 239
TPL +A G+ +++ L
Sbjct: 129 RDARGLTPLELALQRGAQDLVDIL 152
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL--HFAAREGKTDVCKYLLE 77
+AA TG LD LK + + AD+ + GAL H A +EG T V +L
Sbjct: 74 DAARTGFLDTLKVLVEH-----------GADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 78 ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH 112
E D+ +D G TPL A ++G + L H
Sbjct: 123 E--SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ T D G +PL AA+ GH T + L G + + +
Sbjct: 9 AARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
T LH +A G+ ++ LL GA+V+++ T L WA H QE V++L+++ A+
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 182 NAETE 186
+ +++
Sbjct: 127 HTQSK 131
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETED--NITPLLSAVAAGSLTCLDLLIQXX 211
D G L+ AA GQ + V++L+ AN T D +PL A G + ++L++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILM---ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 212 XXXXXXXXX-XTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
TPLH+AA G I++ LLK GAD N D + A ++E VE
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 271 ILF 273
+L
Sbjct: 118 LLI 120
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 142 LLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL 201
L++ GA ++ +PL AA +G +VLL + +A T+ + TPL A + G
Sbjct: 21 LMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80
Query: 202 TCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
+++L++ T LH A + E+++ L+K GAD + + + ++
Sbjct: 81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140
Query: 261 AARGNREAVEIL 272
GN + EIL
Sbjct: 141 IDNGNEDLAEIL 152
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
LH AA+ G + LL + D + + TPL AA +GH + L +HGA+
Sbjct: 38 LHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
L TALH + + E++ L+ GA+V ++S
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 57 RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP 116
R LH AA EG ++ + LL+ DV+ +D T L A H E + L ++GA+
Sbjct: 68 RTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 117 TIPSNLGATALHHSAGIGNIEL 138
S TA S GN +L
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDL 148
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G+ +KQ DY A++ Y +A++ DP++A+ N + + G + A+ + L P+
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
KA YR G A + +A + + + LDP N
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G+ +KQ DY A++ Y +A++ DP++A R + + G + A+ D + L P+
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 401 WPKA 404
KA
Sbjct: 110 NAKA 113
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSN 373
RG+ +KQ DY A++ Y +A++ DP++A N
Sbjct: 83 RGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 82 DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
D+D + DG TPL+ AAR + L A+ +LG +ALH +A + N++
Sbjct: 7 DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 66
Query: 142 LLSKGAEVDSESDA-GTPLIWAAGHGQQEAVKVLLEHHAN 180
LL GA D +++ TPL AA G E KVLL+H AN
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 106
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI-------PSNLGATALHH 129
D Q+ ETPL AAR+G ETAK L +H AN I P ++ +HH
Sbjct: 75 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 127
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 142 LLSKGAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAG 199
L ++ ++D+ D TPLI AA + ++ L+ HA+ NA + + L +A
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 200 SLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
+ LL TPL +AA GS E K LL A+ ++TD + P +
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 260 AAARGNREAVEIL 272
A R + + V +L
Sbjct: 121 AQERMHHDIVRLL 133
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 32/120 (26%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ A+ ++ GS
Sbjct: 4 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN-----------GS------------ 40
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA G E++K LL+AGAD N D+ G+ ++ GN + EIL
Sbjct: 41 ---------TPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV +D++G TPL AAR GH E K L E GA+
Sbjct: 13 AARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF 71
Query: 123 GATALHHSAGIGNIELLTYL 142
G TA S GN +L L
Sbjct: 72 GKTAFDISIDNGNEDLAEIL 91
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G+T LH +A G++E++ LL GA+V+++
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 154 DAG-TPLIWAAGHGQQEAVKVL 174
G T + +G ++ ++L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 38 DDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ KD N LH AAR G +V K LLE DV+ QD+ G+T
Sbjct: 19 DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDKFGKTAFD 77
Query: 96 HAARQGHTETAKYL 109
+ G+ + A+ L
Sbjct: 78 ISIDNGNEDLAEIL 91
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 118 IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLE 176
+ S+LG L +A G + + L++ GA+V ++ G TPL AA +G E VK+LLE
Sbjct: 2 MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 177 HHANPNAE 184
A+ NA+
Sbjct: 61 AGADVNAQ 68
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D+KD +H AAR G+ D + LLE + DV+ +D +G PL AA++GH ++L
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
+H A N ++ G TA + G E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
L AA +G E L ++ N + G TAL +GN E+ LL +GA D +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKD 67
Query: 154 DAGTPLIW-AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
G +I AA GQ + ++ LLE A+ N E + PL A G L ++ L++
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLLHAARQGHTETAKY 108
D D + H A G +V K L + LK D++ G T L A + E +++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYL--LSKGAEVDSESDAGTPLIWAAGHG 166
L E+GA+ I LH +A +G+++L+ L L K A + TPL A G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 167 QQEAVKVLLEHHA-------NPNAETED 187
+A +L+E + N A+ ED
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAED 213
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 9/210 (4%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI- 118
LH A E + + LL + +D+DG PL + E +L N +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 119 --PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE---SDAGTPLIWAAGHGQQEAVKV 173
P + G T H + +GN+E++ L + + D + T L A G E +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL--IQXXXXXXXXXXXXTPL-HIAADI 230
L+E+ A+ + + N PL A + GSL ++LL + TPL H A+
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
+ + K GA+ ++ D G K VA
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLLHAARQGHTETAKY 108
D D + H A G +V K L + LK D++ G T L A + E +++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYL--LSKGAEVDSESDAGTPLIWAAGHG 166
L E+GA+ I LH +A +G+++L+ L L K A + TPL A G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 167 QQEAVKVLLEHHA-------NPNAETED 187
+A +L+E + N A+ ED
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAED 213
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 9/210 (4%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI- 118
LH A E + + LL + +D+DG PL + E +L N +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 119 --PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE---SDAGTPLIWAAGHGQQEAVKV 173
P + G T H + +GN+E++ L + + D + T L A G E +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL--IQXXXXXXXXXXXXTPL-HIAADI 230
L+E+ A+ + + N PL A + GSL ++LL + TPL H A+
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
+ + K GA+ ++ D G K VA
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLLHAARQGHTETAKY 108
D D + H A G +V K L + LK D++ G T L A + E +++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYL--LSKGAEVDSESDAGTPLIWAAGHG 166
L E+GA+ I LH +A +G+++L+ L L K A + TPL A G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 167 QQEAVKVLLEHHA-------NPNAETED 187
+A +L+E + N A+ ED
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAED 213
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 9/210 (4%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI- 118
LH A E + + LL + +D+DG PL + E +L N +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 119 --PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE---SDAGTPLIWAAGHGQQEAVKV 173
P + G T H + +GN+E++ L + + D + T L A G E +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL--IQXXXXXXXXXXXXTPL-HIAADI 230
L+E+ A+ + + N PL A + GSL ++LL + TPL H A+
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
+ + K GA+ ++ D G K VA
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
++ EG+ D+ + ++ E+ D +++G T L +A GHTE K+L + G N +
Sbjct: 44 SSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEV 149
G T LH +A N+++ +L+ GA V
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 18 FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLE 77
L+++ G DL+++I ++DD + + ALH A G T++ K+L+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDD---------PSLPNDEGITALHNAVCAGHTEIVKFLV- 90
Query: 78 ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
+ ++V+ D DG TPL AA + + K+L E GA
Sbjct: 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
T LH A G TEI+K L++ G + N D DG P+ AA+ N + + L
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXX-XXTPL 224
G+ + V+ ++ +P+ ++ IT L +AV AG + L+Q TPL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 225 HIAADIGSTEIIKCLLKAGA 244
H AA + ++ K L+++GA
Sbjct: 108 HCAASCNNVQVCKFLVESGA 127
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
++ EG+ D+ + ++ E+ D +++G T L +A GHTE K+L + G N +
Sbjct: 44 SSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEV 149
G T LH +A N+++ +L+ GA V
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 18 FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLE 77
L+++ G DL+++I ++DD + + ALH A G T++ K+L+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDD---------PSLPNDEGITALHNAVCAGHTEIVKFLV- 90
Query: 78 ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
+ ++V+ D DG TPL AA + + K+L E GA
Sbjct: 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
T LH A G TEI+K L++ G + N D DG P+ AA+ N + + L
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXX-XXTPL 224
G+ + V+ ++ +P+ ++ IT L +AV AG + L+Q TPL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 225 HIAADIGSTEIIKCLLKAGA 244
H AA + ++ K L+++GA
Sbjct: 108 HCAASCNNVQVCKFLVESGA 127
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 10/214 (4%)
Query: 60 LHFAAREGKTDVCKYLLEELK---LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP 116
LH A +G L+ + ++D + +TPL A + L GA+P
Sbjct: 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 117 TIPSNLGATALHHSAGIGNIELLTYLLSKGA--EVDSES---DAGTPLIWAAGHGQQEAV 171
G TA H + + L LL A +D E+ D T L A QE V
Sbjct: 73 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 132
Query: 172 KVLLEHHANPNA-ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXX-XTPLHIAAD 229
++LLE A+ +A + + +PL+ AV SL+ + LL+Q + LH A+
Sbjct: 133 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 192
Query: 230 IGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
G +++ L+++GAD ++ + P+ VA +R
Sbjct: 193 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 59 ALHFAAREGKTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQGHTETAKYLFEHGANPT 117
ALH A + + LLE D+D D + G +PL+HA + L +HGAN
Sbjct: 119 ALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177
Query: 118 IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-DAGTPLIWA 162
G++ALH ++G G + L+ L+ GA+ ++ TPL+ A
Sbjct: 178 AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 32/192 (16%)
Query: 87 DEDGETPLLHAARQGHTETAKYL---FEHGANPT-IPSNLGATALHHSAGIGNIELLTYL 142
DEDG+TPL A QG+ L F+ G I +NL T LH + ++ L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 143 LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
++ GA +P+ HGQ A L H +P + LL + A G+L
Sbjct: 66 VTAGA---------SPMALDR-HGQTAAH--LACEHRSPTC-----LRALLDSAAPGTL- 107
Query: 203 CLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTD-EDGQKPIQVAA 261
DL T LH+A + E ++ LL+ GAD + D + G+ P+ A
Sbjct: 108 --DL-------EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV 158
Query: 262 ARGNREAVEILF 273
+ V++L
Sbjct: 159 ENNSLSMVQLLL 170
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGA 244
+DN TPL+ A AA SL + L+Q PLH A +G T + LK GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEIL 272
D D +G+ P+ +A N + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
+D TPL+ A ++L ++GAN + G LHH+ +G+ L L +GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 148 EVDS-ESDAGTPLIWAAGHGQQEAVKVL 174
++ + +S+ PL A + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 72 CKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA 131
C++LL+ +V+ D G PL HA GHT A + GA+ + G L +
Sbjct: 251 CEFLLQN-GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Query: 132 GIGNIELLTYL 142
N +++T L
Sbjct: 310 ETANADIVTLL 320
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR G+ D + L+ DV +D++G TPL AAR GH E K L E GA+
Sbjct: 31 AARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 123 GATALHHSAGIGNIELLTYL 142
G TA S GN +L L
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 32/120 (26%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
SD G L+ AA GQ + V++L+ + A+ A+ ++
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG------------------------ 57
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
TPLH+AA G E++K LL+AGAD D+ G+ ++ GN + EIL
Sbjct: 58 --------STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
LL AAR G + + L +GA+ G+T LH +A G++E++ LL GA+V ++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 154 DAG-TPLIWAAGHGQQEAVKVL 174
G T + +G ++ ++L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 38 DDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95
DD+ + L AD+ KD N LH AAR G +V K LLE DV QD+ G+T
Sbjct: 37 DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFD 95
Query: 96 HAARQGHTETAKYL 109
+ G+ + A+ L
Sbjct: 96 ISIDNGNEDLAEIL 109
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 118 IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLE 176
+ S+LG L +A G + + L++ GA+V ++ G TPL AA +G E VK+LLE
Sbjct: 20 MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 177 HHANPNAE 184
A+ A+
Sbjct: 79 AGADVXAQ 86
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D+KD +H AAR G D + LLE + DV+ +D +G PL AA++GH ++L
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
+H A N ++ G TA + G E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
L AA +G E L ++ N + G TAL +GN E+ LL +GA D +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKD 67
Query: 154 DAGTPLIW-AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
G +I AA G + ++ LLE A+ N E + PL A G L ++ L++
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGA 244
+DN TPL+ A AA SL + L+Q PLH A +G T + LK GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEIL 272
D D +G+ P+ +A N + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
+D TPL+ A ++L ++GAN + G LHH+ +G+ L L +GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 148 EVDSESDAG 156
++ + G
Sbjct: 293 DLGARDSEG 301
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 72 CKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
C++LL+ +V+ D G PL HA GHT A + GA+
Sbjct: 251 CEFLLQN-GANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGA 244
+DN TPL+ A AA SL + L+Q PLH A +G T + LK GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEIL 272
D D +G+ P+ +A N + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
+D TPL+ A ++L ++GAN + G LHH+ +G+ L L +GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 148 EVDS-ESDAGTPLIWAAGHGQQEAVKVL 174
++ + +S+ PL A + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 72 CKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
C++LL+ +V+ D G PL HA GHT A + GA+
Sbjct: 251 CEFLLQN-GANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G+ +KQ DY A++ Y +A++ DP++A N + + G + A+ + L P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
+A Y G A +DEA + + + LDP N E
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
G+++ + ++KG +V+ + G PL +AA GQ E ++ LL A+ NA + +ITPL
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 193 LSAVAAGSLTCLDLLIQ 209
LSAV G ++C+ LL+
Sbjct: 78 LSAVYEGHVSCVKLLLS 94
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
+ A + G + K G + G LH++A G +E+L +LL KGA++++ +
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNIT 190
TPL+ A G VK+LL A+ + D +T
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 223 PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
PLH AAD G EI++ LL GAD N D+ P+ A G+ V++L
Sbjct: 43 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 93
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 82 DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
DV+ E G PL +AA G E ++L GA+ P T L + G++ +
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKL 91
Query: 142 LLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLE 176
LLSKGA+ + G A +A+K LL+
Sbjct: 92 LLSKGADKTVKGPDGLTAFEAT---DNQAIKALLQ 123
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIP 283
G + +K + G D N T E G+KP+ AA G E +E L L D + P
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAP 69
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D+KD +H AAR G D + LLE + DV+ +D +G PL AA++GH ++L
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
+H A N ++ G TA + G E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
G+++ + ++KG +V+ + G PL +AA GQ E ++ LL A+ NA + +ITPL
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 193 LSAVAAGSLTCLDLLI 208
LSAV G ++C+ LL+
Sbjct: 73 LSAVYEGHVSCVKLLL 88
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
+ A + G + K G + G LH++A G +E+L +LL KGA++++ +
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
TPL+ A G VK+LL A+ + D +T L
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 223 PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
PLH AAD G EI++ LL GAD N D+ P+ A G+ V++L
Sbjct: 38 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 88
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 82 DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
DV+ E G PL +AA G E ++L GA+ P T L + G++ +
Sbjct: 27 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKL 86
Query: 142 LLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLE 176
LLSKGA+ + G + A +A+K LL+
Sbjct: 87 LLSKGADKTVKGPDGLTALEAT---DNQAIKALLQ 118
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIP 283
G + +K + G D N T E G+KP+ AA G E +E L L D + P
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAP 64
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D+KD +H AAR G D + LLE + DV+ +D +G PL AA++GH ++L
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
+H A N ++ G TA + G E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D+KD +H AAR G D + LLE + DV+ +D +G PL AA++GH ++L
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEN-QADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
+H A N ++ G TA + G E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
D +D G + AAR G +T + L E+ A+ I N G LH +A G++ ++ +L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 144 SKGA-EVDSESDAG-TPLIWAAGHGQQEAVKVL 174
A V + G T A +G+ E V ++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 33/136 (24%)
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
G T LH ++ G+I + YLL G++ + + AG TPL A HG + V++LL+H A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLK 241
N N +P LH AA G +I+K LL
Sbjct: 70 NTTGYQNDSP--------------------------------LHDAAKNGHVDIVKLLLS 97
Query: 242 AGADPNVTDEDGQKPI 257
GA N + G +P+
Sbjct: 98 YGASRNAVNIFGLRPV 113
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 90 GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
GET L A+ +G + +YL ++G++P + + G T LH + G+++++ LL A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 150 DSES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNA 183
++ +PL AA +G + VK+LL + A+ NA
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 54 ANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFE 111
N RG LH A+ +G +YLL+ D + +D G TPL A GH + + L +
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 112 HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
H A + LH +A G+++++ LLS GA
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
T LHIA+ G ++ LL+ G+DPNV D G P+ A G+ + VE+L
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
++KD LH A G V + LL+ L V+T ++PL AA+ GH + K L
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Query: 110 FEHGA 114
+GA
Sbjct: 96 LSYGA 100
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPS 281
TPLH A + G ++++ LL+ A N T P+ AA G+ + V++L + +
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Query: 282 IPKWTVDGILEYMQSESGKQL 302
+ + + + +Y ES K L
Sbjct: 105 VNIFGLRPV-DYTDDESMKSL 124
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 64 AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
REG + L+ + D++ D+ G +PL A R+G + + L GA + +
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLL 175
T LH +A G+ +++ LL A++++ ++ G PL +A GQ + + L+
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 166 GQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTP 223
G AV++ L++ N + +D+ +PL A G +++LI + TP
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
LH+AA G +I++ LL+ AD N +E G P+ A G + E L
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 44 LSKTVADIKDANKRG--ALHFAAREGKTDVCKYL-LEELKLDVDTQDEDGETPLLHAARQ 100
L T D+ + G LH+A REG++ V + L + +++V + +D TPL AA
Sbjct: 20 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASH 77
Query: 101 GHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
GH + + L ++ A+ + G LH++ G ++ L++ GA V
Sbjct: 78 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX-XXX 215
+PL WA G+ V++L+ A N + TPL A + G + L+Q
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 216 XXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
PLH A G ++ + L+ GA ++ ++ G+ P+ A A
Sbjct: 96 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 142
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
LH AA G D+ + LL+ K D++ +E G PL +A G + A+ L +GA +I
Sbjct: 71 LHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 129
Query: 120 SNLG 123
+ G
Sbjct: 130 NKYG 133
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
+G+ F + Y A Y +AI +P A +NR+LC++++ Q E ALAD + L
Sbjct: 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
KA + G +E +DEA +L E +
Sbjct: 70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCL 204
G+ + E G L AA G + V+ LL +P+A T L + L
Sbjct: 1 GSMLLEEVCVGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVAL 60
Query: 205 DLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
+LL Q +P+H AA G + +K L++ GAD N D G PI +A G
Sbjct: 61 ELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 120
Query: 265 NREAVEILFP 274
+ V L P
Sbjct: 121 HSSVVSFLAP 130
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
+ QD G +P+ AAR G +T K L EHGA+ + G+ +H + G+ ++++L
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 144 SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANP 181
+ ++ TPL A G Q + +L H P
Sbjct: 130 PESDLHHRDASGLTPLELARQRGAQNLMDILQGHMMIP 167
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
+++DA+ +H AAR G D K L+E DV+ D G P+ A R+GH+ +L
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEH-GADVNALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 11/150 (7%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AA G + LL + D + G+T L G A L + GA+P +
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 75
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAGT-PLIWAAGHGQQEAVKVLLE----H 177
G + +H +A G ++ L L+ GA+V++ G+ P+ A G V L H
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLH 135
Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLL 207
H + + +TPL A G+ +D+L
Sbjct: 136 HRDASG-----LTPLELARQRGAQNLMDIL 160
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
AAR E + L +P + G TAL G+ + LL +GA + + +G
Sbjct: 18 AARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSPAVALELLKQGASPNVQDASG 76
Query: 157 T-PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXX 215
T P+ AA G + +KVL+EH A+ NA P+ A+ G + + L
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHH 136
Query: 216 XXXXXXTPLHIAADIGSTEIIKCL 239
TPL +A G+ ++ L
Sbjct: 137 RDASGLTPLELARQRGAQNLMDIL 160
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL--HFAAREGKTDVCKYLLE 77
+AA TG LD LK + + AD+ + G+L H A REG + V +L
Sbjct: 82 DAARTGFLDTLKVLVEH-----------GADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 78 ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP 116
E D+ +D G TPL A ++G L H P
Sbjct: 131 E--SDLHHRDASGLTPLELARQRGAQNLMDILQGHMMIP 167
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 64 AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
REG + L+ + D++ D+ G +PL A R+G + + L GA + +
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
T LH +A G+ +++ LL A++++ ++ G PL +A GQ + + L+ + A
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 166 GQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTP 223
G AV++ L++ N + +D+ +PL A G +++LI + TP
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
LH+AA G +I++ LL+ AD N +E G P+ A G + E L
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 44 LSKTVADIKDANKRG--ALHFAAREGKTDVCKYL-LEELKLDVDTQDEDGETPLLHAARQ 100
L T D+ + G LH+A REG++ V + L + +++V + +D TPL AA
Sbjct: 25 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASH 82
Query: 101 GHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
GH + + L ++ A+ + G LH++ G ++ L++ GA V
Sbjct: 83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX-XXX 215
+PL WA G+ V++L+ A N + TPL A + G + L+Q
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 216 XXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
PLH A G ++ + L+ GA ++ ++ G+ P+ A A
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
LH AA G D+ + LL+ K D++ +E G PL +A G + A+ L +GA +I
Sbjct: 76 LHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134
Query: 120 SNLG 123
+ G
Sbjct: 135 NKYG 138
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
+G+ F + Y A Y +AI +P A +NR+LC++++ Q E ALAD + L
Sbjct: 15 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
KA + G +E +DEA +L E +
Sbjct: 75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 155 AGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
G L AA G + V+ LL +P+A T L + L+LL Q
Sbjct: 8 VGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASP 67
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
+P+H AA G + +K L++ GAD N D G PI +A G+ V L
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 274 P 274
P
Sbjct: 128 P 128
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
+ QD G +P+ AAR G +T K L EHGA+ + G+ +H + G+ ++++L
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 144 SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANP 181
+ ++ TPL A G Q + +L H P
Sbjct: 128 PESDLHHRDASGLTPLELARQRGAQNLMDILQGHMMIP 165
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
+++DA+ +H AAR G D K L+E DV+ D G P+ A R+GH+ +L
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEH-GADVNALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 11/150 (7%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AA G + LL + D + G+T L G A L + GA+P +
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 73
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAGT-PLIWAAGHGQQEAVKVLLE----H 177
G + +H +A G ++ L L+ GA+V++ G+ P+ A G V L H
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLH 133
Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLL 207
H + + +TPL A G+ +D+L
Sbjct: 134 HRDAS-----GLTPLELARQRGAQNLMDIL 158
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
AAR E + L +P + G TAL G+ + LL +GA + + +G
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSPAVALELLKQGASPNVQDASG 74
Query: 157 T-PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXX 215
T P+ AA G + +KVL+EH A+ NA P+ A+ G + + L
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHH 134
Query: 216 XXXXXXTPLHIAADIGSTEIIKCL 239
TPL +A G+ ++ L
Sbjct: 135 RDASGLTPLELARQRGAQNLMDIL 158
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL--HFAAREGKTDVCKYLLE 77
+AA TG LD LK + + AD+ + G+L H A REG + V +L
Sbjct: 80 DAARTGFLDTLKVLVEH-----------GADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 78 ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP 116
E D+ +D G TPL A ++G L H P
Sbjct: 129 E--SDLHHRDASGLTPLELARQRGAQNLMDILQGHMMIP 165
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 149 VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI 208
+ SDAG L AA GQ E V+ LLE A+PNA P+ + + LL+
Sbjct: 8 LGGSSDAG--LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLL 65
Query: 209 QXXXXXXXXXXXXT-PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
T P+H AA G + + L +AGA +V D G+ P+ +A +G+R+
Sbjct: 66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRD 125
Query: 268 AVEILFPLTSE 278
L T +
Sbjct: 126 IARYLHAATGD 136
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
+H AAREG D +L +D D G P+ A QGH + A+YL
Sbjct: 82 VHDAAREGFLDTL-VVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
LH AA+ G + L+ ++ V+ D+ G T L A GH + + LF P I
Sbjct: 77 LHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ---PNIE 132
Query: 120 SN----LGATALHHSAGIGNIELLTYLLSKGAEVD 150
N LG TALH +A G +++ LL+KGA D
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 113 GANPTIPSNLGA-------TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAG 164
G IPSN A LH +A GN+ L L V+ AG T L WA
Sbjct: 56 GRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115
Query: 165 HGQQEAVKVLLEHHANPNAE 184
G ++ V+ L PN E
Sbjct: 116 GGHKDIVEXLFTQ---PNIE 132
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXX 218
L AA G+ E V+ LLE ANPNA P+ + + LL+
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADP 75
Query: 219 XXXT-PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
T P+H AA G + + L +AGA +V D G+ P+ +A G+R+ L
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
+H AAREG D +L +D +D G P+ A GH + A+YL
Sbjct: 82 VHDAAREGFLDTL-VVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR+ LLE+ DVD DE+G T LL A G + + L E GA+
Sbjct: 51 AARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108
Query: 123 GA-TALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
G TALH +AG E++ L+ GA+++ E + G
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERG 143
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 129 HSAGIGNIELL---------TYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
+AG G +E L +++ S D S+ TP AA ++A+ LLE
Sbjct: 9 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDR- 67
Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXX--XXXXXXXTPLHIAADIGSTEIIK 237
+ +A E+ T LL GS C+ LL + T LH+AA E+++
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 238 CLLKAGADPNVTDEDGQKPIQVA 260
L++ GAD V DE G +++A
Sbjct: 128 ALVELGADIEVEDERGLTALELA 150
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 9/169 (5%)
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
+NL T LH + E+ LL G + + G TPL A G +V VL +
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 179 ANPN------AETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXX--XXXTPLHIAADI 230
P+ A + T L A G L ++LL+ T LH+A D+
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279
+ +++ LLK GAD N G P Q+ R + + L LT E+
Sbjct: 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
+ ++ ++ LH A + ++ + LL D + +D G TPL A QG + L
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 110 FEHGANPTIPSNL------GATALHHSAGIGNIELLTYLLSKGAEVDSE--SDAGTPLIW 161
+ P + S L G T LH ++ G + ++ L+S GA+V+++ + T L
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 162 AAGHGQQEAVKVLLEHHANPNAETEDNITP 191
A + V +LL+ A+ N T +P
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AAR+ LLE+ DVD DE+G T LL A G + + L E GA+
Sbjct: 52 AARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 109
Query: 123 GA-TALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
G TALH +AG E++ L+ GA+++ E + G
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERG 144
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 129 HSAGIGNIELL---------TYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
+AG G +E L +++ S D S+ TP AA ++A+ LLE
Sbjct: 10 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDR- 68
Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXX--XXXXXXXTPLHIAADIGSTEIIK 237
+ +A E+ T LL GS C+ LL + T LH+AA E+++
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 238 CLLKAGADPNVTDEDGQKPIQVA 260
L++ GAD V DE G +++A
Sbjct: 129 ALVELGADIEVEDERGLTALELA 151
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 9/169 (5%)
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
+NL T LH + E+ LL G + + G TPL A G +V VL +
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 179 ANPN------AETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX--XXXXTPLHIAADI 230
P+ A + T L A G L ++LL+ T LH+A D+
Sbjct: 99 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279
+ +++ LLK GAD N G P Q+ R + + L LT E+
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 207
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 31 KKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDG 90
K + ++ Q KG + ++ ++ LH A + ++ + LL D + +D G
Sbjct: 18 KALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRG 75
Query: 91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNL------GATALHHSAGIGNIELLTYLLS 144
TPL A QG + L + P + S L G T LH ++ G + ++ L+S
Sbjct: 76 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 135
Query: 145 KGAEVDSE--SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP 191
GA+V+++ + T L A + V +LL+ A+ N T +P
Sbjct: 136 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G+ +KQ DY A++ Y +A++ DP A N + + G + A+ + L P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVF 440
+A Y G A +DEA + + + LDP + E +
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 107
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G+ +KQ DY A++ Y +A++ DP A N + + G + A+ + L P
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433
+A Y G A +DEA + + + LDP
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
+G++ F+ K Y A+ Y A++ D SN S C++ +G + + + L+P
Sbjct: 12 KGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70
Query: 400 DWPKACYREGAALRLLEKFDEA 421
D+ K R +A L KF +A
Sbjct: 71 DYSKVLLRRASANEGLGKFADA 92
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G+ +KQ DY A++ Y +A++ P++A N + + G + A+ + L P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
+A Y G A +DEA + + + L P N E
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 23/146 (15%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI- 118
L AA+E LL+ +V + GET L AA + E A L E A P +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME--AAPELV 64
Query: 119 ----PSNL--GATALHHSAGIGNIELLTYLLSKGAEVDSESDAGT--------------P 158
S L G TALH + N+ L+ LL++GA V + + P
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 159 LIWAAGHGQQEAVKVLLEHHANPNAE 184
L +AA G +E V++L+EH A+ A+
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQ 150
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 91 ETPLLHAARQGHTET-AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
E+PLL AA++ + +K L G +G TALH +A N+E L+ E+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 150 DSE------SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
E + T L A + V+ LL A+ +SA A GS
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS------------VSARATGS--- 108
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
+ PL AA +GS EI++ L++ GAD D G + + +
Sbjct: 109 ----VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164
Query: 264 GNR 266
N+
Sbjct: 165 PNK 167
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 90 GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
GE PL AA G E + L EHGA+ +LG T LH
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXX 218
L AA G+ E V+ LLE A PNA P+ + + LL+
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADP 75
Query: 219 XXXT-PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
T P+H AA G + + L +AGA +V D G+ P+ +A G+R+ L
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
+H AAREG D +L +D +D G P+ A GH + A+YL
Sbjct: 82 VHDAAREGFLDTL-VVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
K D+ AVD+ +A++ DPS+ L R+ W L + + ALAD K + + P+
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDF----------------DPSDATLLSNRSLCWIRLGQA 384
G+ FK +++ MA+ YT+ + + P + + N C +++
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 385 EHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
+ A+ + P KA YR + L+++D+A + + PE+K +
Sbjct: 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 73/202 (36%), Gaps = 21/202 (10%)
Query: 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
+D Q++ G+T L AA G T + L+ GA + G TALH + + L
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97
Query: 143 LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETE---------------- 186
L DA + + + + PN E E
Sbjct: 98 LQP--RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155
Query: 187 -DNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXX--XTPLHIAADIGSTEIIKCLLKAG 243
D TPL AV + LL TPLH+A + + +++ LLKAG
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 244 ADPNVTDEDGQKPIQVAAARGN 265
ADP G+ P+ A R N
Sbjct: 216 ADPTARMYGGRTPLGSALLRPN 237
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 77 EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHSAGIGN 135
E+ +L ++ ++ DG TPL A E + L + GA+ P G T LH +
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204
Query: 136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP 191
+L LL GA+ + G TPL A ++L H A + D ++P
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDED-GQKPIQVAAARGNREAVEILF 273
TPLH+A E+++ L AGAD N + G+ P+ +A +E+L
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 73/202 (36%), Gaps = 21/202 (10%)
Query: 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
+D Q++ G+T L AA G T + L+ GA + G TALH + + L
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97
Query: 143 LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETE---------------- 186
L DA + + + + PN E E
Sbjct: 98 LQP--RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155
Query: 187 -DNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXX--XTPLHIAADIGSTEIIKCLLKAG 243
D TPL AV + LL TPLH+A + + +++ LLKAG
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 244 ADPNVTDEDGQKPIQVAAARGN 265
ADP G+ P+ A R N
Sbjct: 216 ADPTARMYGGRTPLGSALLRPN 237
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 77 EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHSAGIGN 135
E+ +L ++ ++ DG TPL A E + L + GA+ P G T LH +
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204
Query: 136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP 191
+L LL GA+ + G TPL A ++L H A + D ++P
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDED-GQKPIQVAAARGNREAVEILF 273
TPLH+A E+++ L AGAD N + G+ P+ +A +E+L
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 177 HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEII 236
H A+ A ++N+ + + + AG+L L PLH AA + T+I+
Sbjct: 32 HSASYYAIADNNVRLVCTLLNAGALKNL-------------LENEFPLHQAATLEDTKIV 78
Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
K LL +G D + D+ G + A GN + V++
Sbjct: 79 KILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLF 114
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
LH AA T + K LL LD D+ G T L +A G+ +T K +
Sbjct: 66 LHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFY 124
Query: 120 SNLG-ATALHHSAGIGNIELLTYLLS 144
G T+ +H+ + ++ +++Y LS
Sbjct: 125 GKTGWKTSFYHAVXLNDVSIVSYFLS 150
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 83/218 (38%), Gaps = 45/218 (20%)
Query: 78 ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA-GIGNI 136
+L L++ DE G TPL + E K+L +HG+N N+G + L + + N
Sbjct: 120 QLNLNIPV-DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178
Query: 137 E------LLTYLLSKGAEVDSESDA--GTPLIWAAGHGQQEAVKVLL------------- 175
+ LL YL DS + +I + G A K L
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238
Query: 176 -------EHHANPN---AETEDNITPLLSAVAAGSLTCLDL-LIQXXXXXXXXXXXXTPL 224
E + PN E +D+I L LDL I T L
Sbjct: 239 PIQSGTNEKESKPNDKNGERKDSI-----------LENLDLKWIIANMLNAQDSNGDTCL 287
Query: 225 HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
+IAA +G+ I+ LL GADP + ++ G +P+ A
Sbjct: 288 NIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133
++ QD +G+T L AAR G+ L ++GA+P I + G + AG+
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G E F + D+ AV AYT+ I P DA SNR+ +L A+AD P+
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205
Query: 401 WPKACYREGAA 411
+ +A R+ A
Sbjct: 206 FVRAYIRKATA 216
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL 397
G++A+K+KD+ A+ Y +A + DP++ T ++N++ + G D CR L
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-------DYNKCREL 60
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G E F + D+ AV AYT+ I P DA SNR+ +L A+AD P+
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 401 WPKACYREGAA 411
+ +A R+ A
Sbjct: 71 FVRAYIRKATA 81
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL 397
G++A+K+KD+ A+ Y +A + DP++ T ++N++ + G D CR L
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-------DYNKCREL 60
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDF------------DPSDATLLS---NRSLCWIRLGQA 384
+G FK Y+ AV Y + + + S++ LL+ N ++C+++L +
Sbjct: 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333
Query: 385 EHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
A+ L K YR G A L+ +F+ A F + + ++P+NK
Sbjct: 334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXX-XXXX 220
AA G+ E V+ ++ +P+ E+ IT L +A+ + + +D LI
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 221 XTPLHIAADIGSTEIIKCLLKAGA 244
TPLH AA T I L++ GA
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGA 111
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 63 AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
AA G+ +V + ++E+ D +E+G T L +A + +L GAN P +
Sbjct: 28 AALTGELEVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH 86
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEV 149
G T LH +A + + L+ GA +
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHGAAI 113
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDF------------DPSDATLLS---NRSLCWIRLGQA 384
+G FK Y+ AV Y + + + S++ LL+ N ++C+++L +
Sbjct: 274 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333
Query: 385 EHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
A+ L K YR G A L+ +F+ A F + + ++P+NK
Sbjct: 334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL 397
G++A+K+KD+ A+ Y +A + DP++ T + N++ + G D CR L
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKG-------DYNKCREL 60
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWI 379
G+ A+KQKD+ A Y +AI+ DPS+ T +N++ +
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF 53
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 343 EAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP 402
+AF DY A+ + ++ DA L R+ C+I+ G+ A++D KA L+ D
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT 188
Query: 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444
+A Y+ L + + + E + LD ++K +++
Sbjct: 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 230
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412
A+ + A+D DP + R+ ++ G+++ AL D AL+ D+ A + G L
Sbjct: 22 ALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLL 81
Query: 413 RLLEKFDEAANAFYEGVTLDPENKE 437
K DEA + F + + +P +E
Sbjct: 82 LKQGKLDEAEDDFKKVLKSNPSEQE 106
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 97 AARQGHTETAKYLFEHG---ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
AA G E LFE G + SN+ L ++ ++ +L++KGA++ S +
Sbjct: 13 AAXLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISXFLINKGADIKSRT 72
Query: 154 DAGT----PLIWAAGH---GQQEAVKVLLEHHANPNA 183
GT PL G+ G E K+ LE A+ A
Sbjct: 73 KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 18/100 (18%)
Query: 340 RGDEAFKQKDYLMAVDAYTQA------------------IDFDPSDATLLSNRSLCWIRL 381
+G+E F QKDY A+DAY A ++ D + L +N S C++ +
Sbjct: 17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI 76
Query: 382 GQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEA 421
G A + KA +R A K DEA
Sbjct: 77 GDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEA 116
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412
A+ + A+D DP + R+ ++ +G+++ AL D L+ D+ A + G L
Sbjct: 45 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104
Query: 413 RLLEKFDEAANAFYEGVTLDP-ENKE 437
K DEA + F + + +P EN+E
Sbjct: 105 LKQGKLDEAEDDFKKVLKSNPSENEE 130
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%)
Query: 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK 403
AF DY A+ + ++ DA L R+ C+I+ G+ A++D KA L+ D +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 404 ACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
A Y+ L + + + E + LD ++K +++
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G+ +KQ DY A++ Y +A++ DP++A N + + G + A+ + L P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%)
Query: 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK 403
AF DY A+ + ++ DA L R+ C+I+ G+ A++D KA L+ D +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 404 ACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
A Y+ L + + + E + LD ++K +++
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412
A+ + A+D DP + R+ ++ G+++ AL D L+ D+ A + G L
Sbjct: 45 ALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLL 104
Query: 413 RLLEKFDEAANAFYEGVTLDP-ENKE 437
K DEA + F + + +P EN+E
Sbjct: 105 LKQGKLDEAEDDFKKVLKSNPSENEE 130
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 33.5 bits (75), Expect = 0.23, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHAL 388
+G+ FKQ Y AV Y Q I P + SN+++ I+LG+ A+
Sbjct: 10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAI 58
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 29/70 (41%)
Query: 364 DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN 423
D A LL R + + LG A D A+RPD P+ G L FD A
Sbjct: 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYE 98
Query: 424 AFYEGVTLDP 433
AF + LDP
Sbjct: 99 AFDSVLELDP 108
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D K A+ ALH+AA + D K LL+ L V T +E GET L A ++ H E + L
Sbjct: 220 DAKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELL 278
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-------QAEHALADAKACRALRPDW 401
+Y AVD +T A+ P+D L W +LG Q+E A+A + L+P +
Sbjct: 192 EYDKAVDCFTAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 244
Query: 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
++ Y G + L EA F E + + +++
Sbjct: 245 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 279
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-------QAEHALADAKACRALRPDW 401
+Y AVD +T A+ P+D L W +LG Q+E A+A + L+P +
Sbjct: 192 EYDKAVDCFTAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 244
Query: 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
++ Y G + L EA F E + + +++
Sbjct: 245 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 279
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-------QAEHALADAKACRALRPDW 401
+Y AVD +T A+ P+D L W +LG Q+E A+A + L+P +
Sbjct: 183 EYDKAVDCFTAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 235
Query: 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
++ Y G + L EA F E + + +++
Sbjct: 236 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 270
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-------QAEHALADAKACRALRPDW 401
+Y AVD +T A+ P+D L W +LG Q+E A+A + L+P +
Sbjct: 169 EYDKAVDCFTAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 221
Query: 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
++ Y G + L EA F E + + +++
Sbjct: 222 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 256
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
D K A+ ALH+AA + D K LL+ L V T +E GET L A ++ H E + L
Sbjct: 201 DAKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELL 259
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-------QAEHALADAKACRALRPDW 401
+Y AVD +T A+ P+D L W +LG Q+E A+A + L+P +
Sbjct: 232 EYDKAVDCFTAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284
Query: 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
++ Y G + L EA F E + + +++
Sbjct: 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%)
Query: 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408
DY A +A+T+AI+ + DA N + + + E ALA L A Y
Sbjct: 38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97
Query: 409 GAALRLLEKFDEAANAFYEGVTLDPENKELVF 440
G + E + EA + F + + EN +L +
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFY 129
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDF-----DPSDATLLS-----------NRSLCWIRLGQA 384
G+E FK+ + A+ Y +A+DF + D LL N + C+ +
Sbjct: 45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 104
Query: 385 EHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
A+ A + + KA Y+ G A +EA Y+ +L+P N
Sbjct: 105 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
G+ + +D A+ YT+AI +P+ A SN + G A+A + L+PD
Sbjct: 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143
Query: 401 WPKACYREGAALRLL 415
+P A L+++
Sbjct: 144 FPDAYCNLAHCLQIV 158
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
G+ +KQ DY A++ Y +A++ DP A N + + G + A+ + L P
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|2KB2|A Chain A, Blrp1 Bluf
Length = 148
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455
++LE +EA + + + DP ++++V R+ A R+FHGT
Sbjct: 51 FQVLEGTEEALESLFSEIQSDPRHRDVVELMRD-YSAYRRFHGT 93
>pdb|3GFX|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 4.5 CalciumCY-Digmp Complex
pdb|3GFX|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 4.5 CalciumCY-Digmp Complex
pdb|3GFY|A Chain A, Klebsiella Pneumoniae Blrp1 With Fmn And Cyclic Digmp, No
Metal Ions
pdb|3GFY|B Chain B, Klebsiella Pneumoniae Blrp1 With Fmn And Cyclic Digmp, No
Metal Ions
pdb|3GFZ|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 6 Manganese/cy-digmp
Complex
pdb|3GFZ|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 6 Manganese/cy-digmp
Complex
pdb|3GG0|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 9.0 ManganeseCY-Digmp
Complex
pdb|3GG0|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 9.0 ManganeseCY-Digmp
Complex
pdb|3GG1|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 8.0 CalciumCY-Digmp Complex
pdb|3GG1|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 8.0 CalciumCY-Digmp Complex
Length = 413
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK 458
++LE +EA + + + DP ++++V R+ A R+FHGT +
Sbjct: 56 FQVLEGTEEALESLFSEIQSDPRHRDVVELMRD-YSAYRRFHGTGMR 101
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXX-XXXXXXXTPLHIAADIGSTEIIK 237
AN + E + + +V SL +D L+Q T LH + E +K
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222
Query: 238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
LL+ A + +E G+ P+ +A + E+L
Sbjct: 223 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 108 YLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPL 159
+L ++ N + G+TALH+ N E L LL A ++ +++G TPL
Sbjct: 190 FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,473,979
Number of Sequences: 62578
Number of extensions: 561100
Number of successful extensions: 2329
Number of sequences better than 100.0: 164
Number of HSP's better than 100.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 581
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)