Query 012683
Match_columns 458
No_of_seqs 397 out of 5540
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02874 ankyrin repeat protei 100.0 2.4E-39 5.2E-44 315.3 32.3 286 16-314 3-314 (434)
2 PHA03100 ankyrin repeat protei 100.0 7E-40 1.5E-44 324.6 28.2 258 11-278 32-308 (480)
3 PHA02874 ankyrin repeat protei 100.0 1.5E-38 3.2E-43 309.8 32.6 256 13-279 34-315 (434)
4 PHA02791 ankyrin-like protein; 100.0 7.5E-39 1.6E-43 287.9 26.1 232 24-278 9-245 (284)
5 PHA02946 ankyin-like protein; 100.0 1.8E-37 4E-42 299.5 37.1 251 10-277 5-267 (446)
6 PHA03095 ankyrin-like protein; 100.0 3.3E-38 7.1E-43 312.1 29.6 285 18-315 18-316 (471)
7 PHA03100 ankyrin repeat protei 100.0 3.1E-38 6.8E-43 312.8 28.0 278 26-316 14-310 (480)
8 PHA03095 ankyrin-like protein; 100.0 9.5E-38 2.1E-42 308.8 31.3 255 14-278 47-315 (471)
9 PHA02716 CPXV016; CPX019; EVM0 100.0 1.9E-37 4E-42 307.9 32.0 283 23-316 151-567 (764)
10 PHA02876 ankyrin repeat protei 100.0 1.5E-37 3.1E-42 319.3 31.2 257 14-279 41-401 (682)
11 PHA02946 ankyin-like protein; 100.0 1.1E-36 2.3E-41 294.1 31.2 281 15-317 38-351 (446)
12 PHA02716 CPXV016; CPX019; EVM0 100.0 1.3E-36 2.7E-41 302.0 30.0 246 26-281 191-568 (764)
13 PHA02878 ankyrin repeat protei 100.0 8.2E-37 1.8E-41 301.0 28.3 244 16-273 39-321 (477)
14 PHA02875 ankyrin repeat protei 100.0 1.6E-36 3.4E-41 294.4 29.7 237 16-262 4-247 (413)
15 PHA02875 ankyrin repeat protei 100.0 1.4E-36 3.1E-41 294.7 28.0 225 56-281 2-230 (413)
16 PHA02791 ankyrin-like protein; 100.0 1.3E-36 2.9E-41 273.3 25.6 209 66-279 9-220 (284)
17 PHA02876 ankyrin repeat protei 100.0 1.1E-35 2.5E-40 305.3 33.7 253 14-276 145-432 (682)
18 PHA02878 ankyrin repeat protei 100.0 1.1E-35 2.4E-40 292.9 30.7 269 17-296 3-309 (477)
19 KOG0510 Ankyrin repeat protein 100.0 1.1E-36 2.5E-41 289.8 21.6 262 8-279 115-403 (929)
20 KOG0510 Ankyrin repeat protein 100.0 2.4E-36 5.3E-41 287.6 23.3 295 13-317 87-405 (929)
21 KOG4412 26S proteasome regulat 100.0 8.4E-37 1.8E-41 239.8 16.0 206 56-262 3-213 (226)
22 KOG4412 26S proteasome regulat 100.0 2.1E-36 4.5E-41 237.6 16.1 207 17-230 6-214 (226)
23 PHA02989 ankyrin repeat protei 100.0 3.9E-35 8.5E-40 289.9 28.8 249 16-276 37-312 (494)
24 PHA02798 ankyrin-like protein; 100.0 4.8E-35 1E-39 288.9 27.1 254 16-280 38-318 (489)
25 PHA02989 ankyrin repeat protei 100.0 6.6E-34 1.4E-38 281.2 29.8 280 18-313 4-313 (494)
26 PHA02917 ankyrin-like protein; 100.0 5.8E-32 1.3E-36 270.9 30.6 290 13-315 31-512 (661)
27 PHA02798 ankyrin-like protein; 100.0 6.9E-32 1.5E-36 266.5 27.8 285 16-316 4-318 (489)
28 KOG0508 Ankyrin repeat protein 100.0 1.4E-32 3.1E-37 246.6 19.7 212 62-274 10-236 (615)
29 KOG0508 Ankyrin repeat protein 100.0 1.1E-31 2.4E-36 240.9 23.2 221 17-241 7-236 (615)
30 PHA02730 ankyrin-like protein; 100.0 2.9E-31 6.2E-36 258.9 27.9 295 13-318 40-458 (672)
31 PHA02917 ankyrin-like protein; 100.0 7.1E-31 1.5E-35 263.1 30.5 300 27-339 12-383 (661)
32 KOG0509 Ankyrin repeat and DHH 100.0 5.8E-32 1.3E-36 253.0 18.3 208 56-263 44-255 (600)
33 PHA02730 ankyrin-like protein; 100.0 9.8E-31 2.1E-35 255.2 27.6 259 55-315 154-524 (672)
34 KOG4177 Ankyrin [Cell wall/mem 100.0 1.7E-32 3.7E-37 277.4 11.6 257 12-278 372-631 (1143)
35 KOG4177 Ankyrin [Cell wall/mem 100.0 2.8E-32 6E-37 275.9 11.7 291 11-314 338-631 (1143)
36 KOG0509 Ankyrin repeat and DHH 100.0 1.1E-30 2.4E-35 244.5 17.4 206 91-297 45-255 (600)
37 PHA02792 ankyrin-like protein; 100.0 1.3E-29 2.8E-34 244.7 24.1 284 20-316 78-480 (631)
38 PHA02859 ankyrin repeat protei 100.0 1.2E-28 2.5E-33 214.4 21.3 178 54-264 19-203 (209)
39 PHA02795 ankyrin-like protein; 100.0 7.2E-29 1.6E-33 231.3 21.0 207 66-279 58-288 (437)
40 PHA02795 ankyrin-like protein; 100.0 3.9E-28 8.5E-33 226.3 21.4 208 62-277 83-314 (437)
41 PHA02792 ankyrin-like protein; 100.0 1.2E-27 2.7E-32 231.0 25.2 292 14-318 37-439 (631)
42 PHA02859 ankyrin repeat protei 100.0 7E-28 1.5E-32 209.5 21.3 150 49-199 44-203 (209)
43 KOG0507 CASK-interacting adapt 99.9 2.3E-27 4.9E-32 225.0 15.2 262 15-277 4-281 (854)
44 KOG0502 Integral membrane anky 99.9 3.1E-27 6.6E-32 191.8 13.0 248 13-274 30-279 (296)
45 KOG0502 Integral membrane anky 99.9 1.4E-27 3E-32 193.8 7.6 229 18-258 66-296 (296)
46 TIGR00870 trp transient-recept 99.9 4.2E-25 9E-30 229.1 17.9 217 55-275 16-279 (743)
47 TIGR00870 trp transient-recept 99.9 7.1E-25 1.5E-29 227.4 18.6 240 11-262 14-299 (743)
48 PLN03192 Voltage-dependent pot 99.9 5E-24 1.1E-28 222.1 24.8 173 55-262 524-698 (823)
49 PLN03192 Voltage-dependent pot 99.9 7E-24 1.5E-28 221.0 23.7 189 102-293 506-695 (823)
50 KOG4369 RTK signaling protein 99.9 6E-25 1.3E-29 215.1 7.7 260 13-281 789-1055(2131)
51 KOG0507 CASK-interacting adapt 99.9 1.9E-23 4.1E-28 198.6 15.6 236 58-295 5-262 (854)
52 KOG0514 Ankyrin repeat protein 99.9 1.2E-23 2.6E-28 183.6 10.5 180 68-275 238-429 (452)
53 KOG4369 RTK signaling protein 99.9 3E-24 6.5E-29 210.2 7.0 297 9-318 752-1056(2131)
54 KOG0505 Myosin phosphatase, re 99.9 2.9E-23 6.2E-28 190.8 11.8 229 15-262 41-273 (527)
55 KOG0514 Ankyrin repeat protein 99.9 3.3E-22 7.1E-27 174.7 13.4 184 25-241 237-428 (452)
56 KOG0553 TPR repeat-containing 99.9 9.6E-22 2.1E-26 169.6 13.6 125 329-453 76-200 (304)
57 KOG0505 Myosin phosphatase, re 99.9 1.4E-21 3E-26 179.8 12.2 213 59-281 43-259 (527)
58 PHA02743 Viral ankyrin protein 99.9 6.4E-21 1.4E-25 159.5 14.6 81 172-252 77-160 (166)
59 PHA02743 Viral ankyrin protein 99.9 1.5E-20 3.3E-25 157.3 15.5 137 52-189 16-162 (166)
60 PHA02741 hypothetical protein; 99.9 2.1E-20 4.6E-25 157.3 15.3 130 50-179 15-156 (169)
61 PHA02884 ankyrin repeat protei 99.8 5.9E-20 1.3E-24 165.4 16.9 153 85-244 27-186 (300)
62 PHA02741 hypothetical protein; 99.8 1.1E-19 2.3E-24 153.0 15.1 129 84-212 15-156 (169)
63 PHA02884 ankyrin repeat protei 99.8 4E-19 8.6E-24 160.0 17.0 153 51-212 27-186 (300)
64 PHA02736 Viral ankyrin protein 99.8 2E-19 4.3E-24 149.3 12.1 131 49-181 10-152 (154)
65 KOG0512 Fetal globin-inducing 99.8 1.1E-18 2.3E-23 137.0 13.7 141 59-199 66-209 (228)
66 PHA02736 Viral ankyrin protein 99.8 5.6E-19 1.2E-23 146.6 11.7 144 2-150 3-153 (154)
67 KOG0512 Fetal globin-inducing 99.8 2.8E-18 6.1E-23 134.7 13.9 140 92-231 65-209 (228)
68 KOG3676 Ca2+-permeable cation 99.8 1.2E-18 2.5E-23 168.5 12.8 206 58-275 103-330 (782)
69 KOG3676 Ca2+-permeable cation 99.8 2.8E-18 6.1E-23 165.9 14.0 217 16-242 103-330 (782)
70 PF12796 Ank_2: Ankyrin repeat 99.7 3.6E-17 7.8E-22 122.1 11.3 88 60-152 1-88 (89)
71 PF12796 Ank_2: Ankyrin repeat 99.7 6.2E-17 1.3E-21 120.9 11.5 80 193-275 2-81 (89)
72 PRK15359 type III secretion sy 99.7 1.5E-16 3.3E-21 129.5 14.5 116 336-451 26-141 (144)
73 KOG0548 Molecular co-chaperone 99.7 1.4E-16 3.1E-21 147.4 14.1 116 334-449 358-473 (539)
74 KOG0195 Integrin-linked kinase 99.7 1E-17 2.2E-22 142.3 5.9 115 47-162 25-140 (448)
75 cd00204 ANK ankyrin repeats; 99.7 7E-16 1.5E-20 123.3 15.3 121 53-174 4-125 (126)
76 KOG0543 FKBP-type peptidyl-pro 99.7 1.8E-16 4E-21 142.9 12.8 132 326-457 200-346 (397)
77 KOG0195 Integrin-linked kinase 99.7 9.6E-17 2.1E-21 136.4 10.1 114 114-227 25-140 (448)
78 cd00204 ANK ankyrin repeats; 99.7 1.4E-15 2.9E-20 121.6 15.6 122 86-207 3-125 (126)
79 KOG4234 TPR repeat-containing 99.7 8.4E-16 1.8E-20 124.4 12.4 121 331-451 92-217 (271)
80 PLN03088 SGT1, suppressor of 99.7 9.6E-16 2.1E-20 144.1 14.9 118 335-452 3-120 (356)
81 KOG4214 Myotrophin and similar 99.7 8.3E-16 1.8E-20 107.6 9.0 104 16-130 4-107 (117)
82 KOG0547 Translocase of outer m 99.6 1.8E-15 3.9E-20 138.3 12.9 128 326-453 107-235 (606)
83 PRK15363 pathogenicity island 99.6 4.5E-15 9.8E-20 118.2 13.6 119 332-450 33-154 (157)
84 KOG0548 Molecular co-chaperone 99.6 1.5E-15 3.3E-20 140.7 11.3 113 334-446 2-114 (539)
85 KOG4648 Uncharacterized conser 99.6 9E-15 1.9E-19 128.1 10.7 123 325-447 88-210 (536)
86 KOG4214 Myotrophin and similar 99.6 1.5E-14 3.2E-19 101.3 9.6 100 126-225 5-105 (117)
87 KOG4626 O-linked N-acetylgluco 99.6 5E-15 1.1E-19 139.0 8.4 121 334-454 252-372 (966)
88 TIGR02552 LcrH_SycD type III s 99.5 1.3E-13 2.7E-18 111.9 13.8 116 332-447 15-130 (135)
89 KOG1710 MYND Zn-finger and ank 99.5 4.6E-14 1E-18 120.2 10.9 120 157-276 14-135 (396)
90 KOG4626 O-linked N-acetylgluco 99.5 3.7E-14 8E-19 133.3 10.5 122 331-452 385-506 (966)
91 COG0666 Arp FOG: Ankyrin repea 99.5 3E-13 6.6E-18 120.4 15.3 122 155-276 73-203 (235)
92 PRK11189 lipoprotein NlpI; Pro 99.5 1.8E-13 4E-18 126.0 14.0 106 332-437 62-167 (296)
93 PF13637 Ank_4: Ankyrin repeat 99.5 3.6E-14 7.7E-19 94.3 6.0 54 220-273 1-54 (54)
94 KOG0550 Molecular chaperone (D 99.5 3.5E-13 7.5E-18 121.2 11.6 124 327-451 242-369 (486)
95 PRK15359 type III secretion sy 99.5 3.1E-13 6.8E-18 110.0 10.4 99 354-455 13-111 (144)
96 PRK10370 formate-dependent nit 99.5 1.4E-12 3E-17 112.0 14.3 111 332-442 71-184 (198)
97 COG0666 Arp FOG: Ankyrin repea 99.5 6.3E-12 1.4E-16 111.8 18.8 129 83-211 66-203 (235)
98 COG3063 PilF Tfp pilus assembl 99.5 2.1E-12 4.6E-17 107.8 13.9 126 331-456 32-159 (250)
99 TIGR00990 3a0801s09 mitochondr 99.4 1.1E-12 2.3E-17 134.0 14.6 120 334-453 331-450 (615)
100 PF13857 Ank_5: Ankyrin repeat 99.4 1.1E-13 2.5E-18 92.3 4.7 54 207-260 1-56 (56)
101 COG5010 TadD Flp pilus assembl 99.4 1.8E-12 3.9E-17 110.6 12.6 124 334-457 100-223 (257)
102 KOG1710 MYND Zn-finger and ank 99.4 2E-12 4.4E-17 110.3 12.4 120 15-144 13-133 (396)
103 TIGR00990 3a0801s09 mitochondr 99.4 1.6E-12 3.4E-17 132.8 14.0 122 334-455 365-486 (615)
104 PF13637 Ank_4: Ankyrin repeat 99.4 4.4E-13 9.5E-18 89.1 6.4 54 56-110 1-54 (54)
105 KOG0515 p53-interacting protei 99.4 1E-12 2.2E-17 121.0 10.1 118 58-176 552-673 (752)
106 PRK10370 formate-dependent nit 99.4 2.1E-12 4.5E-17 111.0 11.6 109 347-455 52-163 (198)
107 KOG1126 DNA-binding cell divis 99.4 4E-13 8.7E-18 127.9 7.7 123 332-454 419-541 (638)
108 PTZ00322 6-phosphofructo-2-kin 99.4 6.6E-12 1.4E-16 127.7 15.1 96 58-154 84-186 (664)
109 PRK12370 invasion protein regu 99.4 4.2E-12 9.2E-17 127.4 13.5 123 333-455 337-460 (553)
110 KOG0545 Aryl-hydrocarbon recep 99.4 4.9E-12 1.1E-16 106.1 11.5 127 329-455 173-318 (329)
111 KOG0547 Translocase of outer m 99.4 5.9E-12 1.3E-16 115.6 12.9 126 328-453 320-445 (606)
112 PRK15331 chaperone protein Sic 99.4 1.4E-11 3E-16 98.7 13.1 121 332-453 35-155 (165)
113 KOG1155 Anaphase-promoting com 99.4 2.9E-12 6.3E-17 116.9 10.2 122 334-455 364-485 (559)
114 KOG1155 Anaphase-promoting com 99.4 7E-12 1.5E-16 114.4 12.6 123 335-457 331-453 (559)
115 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.1E-11 2.5E-16 97.9 12.3 109 334-442 2-116 (119)
116 PTZ00322 6-phosphofructo-2-kin 99.4 4.2E-12 9.1E-17 129.2 11.9 105 157-261 84-196 (664)
117 PF13414 TPR_11: TPR repeat; P 99.4 3E-12 6.4E-17 90.3 7.6 66 368-433 3-69 (69)
118 PF13857 Ank_5: Ankyrin repeat 99.4 1.2E-12 2.5E-17 87.4 4.9 56 75-130 1-56 (56)
119 KOG0376 Serine-threonine phosp 99.3 1.9E-12 4.1E-17 119.5 7.9 119 333-451 3-121 (476)
120 PF13414 TPR_11: TPR repeat; P 99.3 2.9E-12 6.3E-17 90.3 6.5 67 333-399 2-69 (69)
121 PRK15179 Vi polysaccharide bio 99.3 1.3E-11 2.8E-16 124.4 13.6 124 332-455 84-207 (694)
122 KOG0515 p53-interacting protei 99.3 4E-12 8.6E-17 117.1 8.9 122 13-144 549-673 (752)
123 PRK12370 invasion protein regu 99.3 1.8E-11 3.9E-16 122.8 13.7 109 346-454 316-424 (553)
124 KOG1126 DNA-binding cell divis 99.3 5.9E-12 1.3E-16 120.0 9.2 135 321-455 476-610 (638)
125 KOG4642 Chaperone-dependent E3 99.3 4.6E-12 9.9E-17 105.9 7.4 104 328-431 4-107 (284)
126 PRK09782 bacteriophage N4 rece 99.3 3.2E-11 7E-16 126.3 14.8 115 335-449 610-724 (987)
127 KOG0624 dsRNA-activated protei 99.3 2.3E-11 4.9E-16 107.1 11.4 116 332-447 36-154 (504)
128 KOG1125 TPR repeat-containing 99.3 8.5E-12 1.8E-16 117.1 9.3 117 337-453 433-559 (579)
129 TIGR02552 LcrH_SycD type III s 99.3 3.2E-11 6.9E-16 97.7 11.2 101 355-455 4-104 (135)
130 PRK09782 bacteriophage N4 rece 99.3 3.2E-11 6.9E-16 126.4 14.0 115 341-456 583-697 (987)
131 cd00189 TPR Tetratricopeptide 99.3 6.3E-11 1.4E-15 89.1 11.5 99 336-434 2-100 (100)
132 KOG4555 TPR repeat-containing 99.3 2.4E-10 5.3E-15 86.4 13.9 104 329-432 38-145 (175)
133 PF13429 TPR_15: Tetratricopep 99.3 1.9E-11 4.2E-16 112.2 9.9 125 332-456 144-268 (280)
134 PRK02603 photosystem I assembl 99.3 9.9E-11 2.1E-15 98.9 13.4 105 331-435 32-153 (172)
135 TIGR02521 type_IV_pilW type IV 99.3 9.3E-11 2E-15 104.2 14.1 120 335-454 66-187 (234)
136 PRK15363 pathogenicity island 99.3 3.8E-11 8.3E-16 95.9 9.5 98 359-456 25-123 (157)
137 TIGR03302 OM_YfiO outer membra 99.3 7E-11 1.5E-15 105.6 12.4 109 331-439 30-152 (235)
138 TIGR02521 type_IV_pilW type IV 99.2 1.2E-10 2.5E-15 103.6 13.6 122 334-455 99-222 (234)
139 PRK11189 lipoprotein NlpI; Pro 99.2 5.7E-11 1.2E-15 109.4 11.8 108 348-455 40-151 (296)
140 PF12895 Apc3: Anaphase-promot 99.2 1.5E-11 3.3E-16 90.2 6.3 82 346-428 1-84 (84)
141 PRK15174 Vi polysaccharide exp 99.2 8.8E-11 1.9E-15 119.9 13.5 121 334-454 246-370 (656)
142 CHL00033 ycf3 photosystem I as 99.2 3.3E-10 7.2E-15 95.3 14.4 106 331-436 32-154 (168)
143 PRK15174 Vi polysaccharide exp 99.2 1.1E-10 2.4E-15 119.2 13.5 105 332-436 282-386 (656)
144 KOG0551 Hsp90 co-chaperone CNS 99.2 1.2E-10 2.7E-15 102.1 11.1 108 332-439 79-190 (390)
145 KOG0624 dsRNA-activated protei 99.2 4E-10 8.6E-15 99.4 13.1 118 333-450 154-271 (504)
146 PF13432 TPR_16: Tetratricopep 99.2 1.3E-10 2.8E-15 80.7 7.8 64 339-402 2-65 (65)
147 KOG2076 RNA polymerase III tra 99.2 7.4E-10 1.6E-14 109.2 15.3 131 324-454 129-259 (895)
148 TIGR03302 OM_YfiO outer membra 99.1 4.6E-10 9.9E-15 100.3 12.2 122 334-455 70-222 (235)
149 KOG1308 Hsp70-interacting prot 99.1 3.8E-11 8.3E-16 105.9 4.9 113 322-434 102-214 (377)
150 PRK10803 tol-pal system protei 99.1 9.3E-10 2E-14 98.2 13.8 111 334-444 142-259 (263)
151 PF13432 TPR_16: Tetratricopep 99.1 1.2E-10 2.7E-15 80.8 6.6 65 372-436 1-65 (65)
152 PLN02789 farnesyltranstransfer 99.1 8E-10 1.7E-14 101.8 13.6 119 331-449 68-189 (320)
153 COG3063 PilF Tfp pilus assembl 99.1 2.7E-10 5.9E-15 95.3 9.0 121 332-452 67-189 (250)
154 PRK10049 pgaA outer membrane p 99.1 8.4E-10 1.8E-14 115.1 13.9 118 334-452 49-166 (765)
155 PRK11447 cellulose synthase su 99.1 9.7E-10 2.1E-14 119.9 13.6 118 338-455 355-514 (1157)
156 COG4783 Putative Zn-dependent 99.1 1.9E-09 4.1E-14 100.0 12.9 124 332-455 304-427 (484)
157 PRK11447 cellulose synthase su 99.1 8.8E-10 1.9E-14 120.2 12.3 115 333-447 302-430 (1157)
158 KOG1125 TPR repeat-containing 99.1 5.7E-10 1.2E-14 105.1 9.0 131 325-455 310-517 (579)
159 PRK11788 tetratricopeptide rep 99.0 3.5E-09 7.6E-14 102.3 14.0 121 334-454 141-267 (389)
160 TIGR02917 PEP_TPR_lipo putativ 99.0 2.7E-09 5.9E-14 114.4 14.5 124 332-455 123-246 (899)
161 PLN02789 farnesyltranstransfer 99.0 3.7E-09 7.9E-14 97.4 13.0 111 344-454 47-160 (320)
162 COG4235 Cytochrome c biogenesi 99.0 4.4E-09 9.6E-14 92.5 12.5 118 332-449 154-274 (287)
163 TIGR02917 PEP_TPR_lipo putativ 99.0 2.8E-09 6E-14 114.3 13.7 121 334-455 770-890 (899)
164 PRK11788 tetratricopeptide rep 99.0 4.4E-09 9.6E-14 101.6 13.5 106 336-442 216-322 (389)
165 PRK15179 Vi polysaccharide bio 99.0 4.1E-09 8.9E-14 106.6 13.4 104 332-435 118-221 (694)
166 KOG1173 Anaphase-promoting com 99.0 4.7E-09 1E-13 98.7 12.2 113 337-449 417-536 (611)
167 COG5010 TadD Flp pilus assembl 99.0 3.5E-09 7.5E-14 90.7 10.4 118 338-455 70-187 (257)
168 KOG2003 TPR repeat-containing 99.0 2.2E-09 4.7E-14 98.1 9.5 122 334-455 490-611 (840)
169 PF13371 TPR_9: Tetratricopept 99.0 3.1E-09 6.6E-14 75.7 8.2 68 342-409 3-70 (73)
170 PF14559 TPR_19: Tetratricopep 99.0 1.6E-09 3.4E-14 76.0 6.3 65 379-443 2-66 (68)
171 PF14559 TPR_19: Tetratricopep 99.0 3.3E-09 7.1E-14 74.3 7.8 68 344-411 1-68 (68)
172 KOG4162 Predicted calmodulin-b 98.9 6.4E-09 1.4E-13 101.1 11.1 116 339-454 655-772 (799)
173 PF13371 TPR_9: Tetratricopept 98.9 6E-09 1.3E-13 74.1 8.2 71 374-444 1-71 (73)
174 COG1729 Uncharacterized protei 98.9 2.7E-08 5.8E-13 86.5 13.3 111 334-444 141-257 (262)
175 PF13512 TPR_18: Tetratricopep 98.9 4.4E-08 9.5E-13 77.1 13.2 106 334-439 10-136 (142)
176 KOG0818 GTPase-activating prot 98.9 3.8E-09 8.3E-14 97.0 8.3 94 182-275 121-222 (669)
177 PRK10049 pgaA outer membrane p 98.9 1.6E-08 3.5E-13 105.6 13.7 108 333-440 358-465 (765)
178 PF06552 TOM20_plant: Plant sp 98.9 2.1E-08 4.6E-13 81.3 10.8 98 350-447 7-125 (186)
179 COG4785 NlpI Lipoprotein NlpI, 98.9 1E-08 2.2E-13 84.9 9.1 112 331-442 62-173 (297)
180 KOG1128 Uncharacterized conser 98.9 5.4E-09 1.2E-13 101.1 8.6 120 336-455 487-606 (777)
181 CHL00033 ycf3 photosystem I as 98.9 1.1E-08 2.3E-13 86.1 9.5 110 341-450 6-120 (168)
182 PF13429 TPR_15: Tetratricopep 98.9 5.2E-09 1.1E-13 96.1 8.2 121 335-455 111-233 (280)
183 COG4783 Putative Zn-dependent 98.9 4.2E-08 9.1E-13 91.2 13.2 115 335-449 341-455 (484)
184 PF12688 TPR_5: Tetratrico pep 98.9 4.4E-08 9.6E-13 75.9 11.4 96 335-430 2-103 (120)
185 PRK14574 hmsH outer membrane p 98.9 2.2E-08 4.8E-13 103.2 12.7 120 335-454 35-154 (822)
186 KOG0553 TPR repeat-containing 98.9 7.3E-09 1.6E-13 90.5 7.5 86 371-456 84-169 (304)
187 PF13525 YfiO: Outer membrane 98.8 1E-07 2.3E-12 82.5 14.6 118 332-449 3-140 (203)
188 PRK10866 outer membrane biogen 98.8 1.1E-07 2.3E-12 84.6 14.7 117 333-449 31-174 (243)
189 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.1E-08 2.4E-13 95.4 8.7 71 328-398 69-142 (453)
190 cd00189 TPR Tetratricopeptide 98.8 4E-08 8.7E-13 73.4 10.2 85 370-454 2-86 (100)
191 KOG0782 Predicted diacylglycer 98.8 8.9E-09 1.9E-13 96.1 6.9 125 12-145 864-989 (1004)
192 PF09976 TPR_21: Tetratricopep 98.8 1.9E-07 4E-12 76.4 14.1 124 331-455 8-137 (145)
193 PLN03088 SGT1, suppressor of 98.8 2.3E-08 4.9E-13 94.4 9.8 85 371-455 5-89 (356)
194 KOG1173 Anaphase-promoting com 98.8 3E-08 6.5E-13 93.4 10.3 118 338-455 384-508 (611)
195 PF13606 Ank_3: Ankyrin repeat 98.8 7.6E-09 1.7E-13 58.5 4.0 28 220-247 2-29 (30)
196 KOG4162 Predicted calmodulin-b 98.8 4.1E-08 9E-13 95.6 11.4 107 331-437 681-789 (799)
197 KOG0783 Uncharacterized conser 98.8 1E-08 2.2E-13 99.9 7.2 86 46-132 42-128 (1267)
198 PLN03081 pentatricopeptide (PP 98.8 1.6E-05 3.5E-10 82.8 31.2 363 57-455 162-547 (697)
199 PF09976 TPR_21: Tetratricopep 98.8 6.8E-08 1.5E-12 79.0 10.6 95 334-429 48-145 (145)
200 COG4235 Cytochrome c biogenesi 98.8 9E-08 1.9E-12 84.4 11.7 107 349-455 137-246 (287)
201 KOG1129 TPR repeat-containing 98.8 1.8E-08 3.9E-13 88.6 7.0 115 341-455 331-448 (478)
202 PRK02603 photosystem I assembl 98.8 1E-07 2.3E-12 80.4 11.6 98 355-452 20-122 (172)
203 KOG1156 N-terminal acetyltrans 98.8 7.9E-08 1.7E-12 92.0 11.8 120 335-454 8-127 (700)
204 KOG0783 Uncharacterized conser 98.7 4.9E-09 1.1E-13 102.1 3.3 82 181-262 45-128 (1267)
205 TIGR02795 tol_pal_ybgF tol-pal 98.7 7.5E-08 1.6E-12 75.8 9.7 88 368-455 2-95 (119)
206 KOG0506 Glutaminase (contains 98.7 1.4E-08 2.9E-13 93.0 5.7 97 51-148 501-598 (622)
207 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 3E-08 6.4E-13 92.5 8.0 70 362-431 69-141 (453)
208 KOG3060 Uncharacterized conser 98.7 3.8E-07 8.3E-12 77.7 13.9 113 338-450 124-239 (289)
209 PF13606 Ank_3: Ankyrin repeat 98.7 1.9E-08 4E-13 56.9 4.1 28 90-117 2-29 (30)
210 KOG0506 Glutaminase (contains 98.7 1.2E-08 2.5E-13 93.5 4.9 103 3-114 495-597 (622)
211 PF00023 Ank: Ankyrin repeat H 98.7 2E-08 4.4E-13 58.6 4.4 33 219-251 1-33 (33)
212 KOG0550 Molecular chaperone (D 98.7 2.9E-08 6.4E-13 90.0 6.8 106 321-426 36-141 (486)
213 PRK14574 hmsH outer membrane p 98.7 1.8E-07 3.9E-12 96.6 13.3 116 335-451 103-218 (822)
214 COG2956 Predicted N-acetylgluc 98.7 2.2E-07 4.7E-12 81.9 11.6 121 334-454 141-267 (389)
215 TIGR00540 hemY_coli hemY prote 98.7 4.4E-07 9.4E-12 88.0 15.2 123 332-454 82-205 (409)
216 PLN03077 Protein ECB2; Provisi 98.7 2.8E-05 6E-10 83.1 29.6 391 22-455 299-710 (857)
217 PRK11906 transcriptional regul 98.7 4.3E-07 9.3E-12 85.1 13.1 118 336-453 257-389 (458)
218 PRK10153 DNA-binding transcrip 98.6 3.3E-07 7.1E-12 90.2 12.7 121 333-454 338-471 (517)
219 PF13424 TPR_12: Tetratricopep 98.6 3.7E-08 8E-13 71.1 4.6 66 366-431 3-75 (78)
220 KOG2002 TPR-containing nuclear 98.6 1.7E-07 3.7E-12 93.7 10.2 114 341-454 653-768 (1018)
221 KOG0782 Predicted diacylglycer 98.6 1.4E-07 3E-12 88.4 8.9 116 159-274 870-988 (1004)
222 KOG3060 Uncharacterized conser 98.6 6.2E-07 1.3E-11 76.5 11.9 112 339-450 91-202 (289)
223 PRK15331 chaperone protein Sic 98.6 2E-07 4.3E-12 75.1 8.4 97 360-456 29-125 (165)
224 KOG2002 TPR-containing nuclear 98.6 5.7E-07 1.2E-11 90.1 13.1 118 332-449 305-427 (1018)
225 KOG0705 GTPase-activating prot 98.6 1.3E-07 2.8E-12 88.9 8.1 96 15-116 625-720 (749)
226 TIGR00540 hemY_coli hemY prote 98.6 4.4E-07 9.4E-12 88.0 12.2 122 333-455 262-389 (409)
227 PF00023 Ank: Ankyrin repeat H 98.6 7.7E-08 1.7E-12 56.2 4.3 30 90-119 2-31 (33)
228 cd05804 StaR_like StaR_like; a 98.6 9.9E-07 2.1E-11 84.1 14.3 100 334-433 114-217 (355)
229 PF12895 Apc3: Anaphase-promot 98.6 8.3E-08 1.8E-12 70.3 5.3 74 381-455 2-77 (84)
230 cd05804 StaR_like StaR_like; a 98.6 3.3E-07 7.2E-12 87.4 10.9 118 338-455 47-205 (355)
231 PRK14720 transcript cleavage f 98.6 3.3E-07 7.2E-12 93.8 11.3 121 332-455 29-168 (906)
232 PF12688 TPR_5: Tetratrico pep 98.6 4.6E-07 9.9E-12 70.3 9.3 88 368-455 1-94 (120)
233 KOG0543 FKBP-type peptidyl-pro 98.6 9.6E-07 2.1E-11 80.8 12.3 99 333-431 256-355 (397)
234 KOG2076 RNA polymerase III tra 98.6 8.3E-07 1.8E-11 88.2 12.5 102 332-433 171-272 (895)
235 PRK10747 putative protoheme IX 98.5 2.2E-06 4.8E-11 82.7 15.1 94 341-434 125-219 (398)
236 PLN03081 pentatricopeptide (PP 98.5 0.00019 4E-09 75.0 30.0 365 57-451 193-603 (697)
237 KOG0705 GTPase-activating prot 98.5 2.5E-07 5.5E-12 86.9 7.4 90 190-279 626-720 (749)
238 PRK10747 putative protoheme IX 98.5 9.7E-07 2.1E-11 85.1 11.9 120 332-455 261-380 (398)
239 KOG2003 TPR repeat-containing 98.5 2E-06 4.3E-11 79.2 12.6 121 329-449 553-707 (840)
240 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.5E-06 3.3E-11 81.8 12.2 88 339-426 205-292 (395)
241 COG2956 Predicted N-acetylgluc 98.5 2.6E-06 5.5E-11 75.3 12.6 109 329-437 175-284 (389)
242 PRK11906 transcriptional regul 98.5 8.6E-07 1.9E-11 83.1 10.0 92 347-438 317-408 (458)
243 KOG0522 Ankyrin repeat protein 98.5 4.5E-07 9.8E-12 84.8 8.1 88 58-145 22-110 (560)
244 KOG1174 Anaphase-promoting com 98.5 1.7E-06 3.7E-11 78.8 11.4 107 348-455 418-524 (564)
245 KOG0818 GTPase-activating prot 98.5 8.4E-07 1.8E-11 82.0 9.5 85 60-145 137-222 (669)
246 KOG1840 Kinesin light chain [C 98.5 6.8E-07 1.5E-11 86.5 9.0 122 335-456 242-387 (508)
247 PRK10153 DNA-binding transcrip 98.5 2.1E-06 4.5E-11 84.6 12.6 91 348-439 398-490 (517)
248 KOG3609 Receptor-activated Ca2 98.5 8.3E-07 1.8E-11 87.9 9.5 124 55-185 24-161 (822)
249 PF13424 TPR_12: Tetratricopep 98.4 5.1E-07 1.1E-11 65.1 6.1 66 332-397 3-75 (78)
250 KOG0511 Ankyrin repeat protein 98.4 9.8E-07 2.1E-11 78.9 8.3 84 45-131 27-110 (516)
251 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.2E-06 4.7E-11 80.8 11.1 106 347-455 182-287 (395)
252 KOG1128 Uncharacterized conser 98.4 2.9E-06 6.2E-11 82.7 11.7 120 334-454 424-571 (777)
253 KOG1840 Kinesin light chain [C 98.4 1.4E-06 3E-11 84.4 9.5 124 332-455 197-344 (508)
254 KOG1310 WD40 repeat protein [G 98.4 1.8E-06 4E-11 80.8 9.8 110 328-437 368-480 (758)
255 KOG1129 TPR repeat-containing 98.4 1.3E-06 2.8E-11 77.2 8.2 124 333-456 289-415 (478)
256 COG4700 Uncharacterized protei 98.4 9.1E-06 2E-10 66.2 12.2 120 334-454 89-211 (251)
257 KOG0522 Ankyrin repeat protein 98.4 7.3E-07 1.6E-11 83.4 6.9 85 157-241 22-109 (560)
258 PLN03218 maturation of RBCL 1; 98.4 0.00055 1.2E-08 73.4 28.8 396 11-445 370-799 (1060)
259 PRK10803 tol-pal system protei 98.4 2.8E-06 6.1E-11 76.1 10.0 89 367-455 141-236 (263)
260 KOG4234 TPR repeat-containing 98.4 3.9E-06 8.5E-11 69.0 9.7 84 331-414 131-214 (271)
261 KOG1156 N-terminal acetyltrans 98.3 5.7E-06 1.2E-10 79.6 11.7 141 293-451 18-158 (700)
262 PF13428 TPR_14: Tetratricopep 98.3 1.4E-06 3E-11 54.7 5.2 42 369-410 2-43 (44)
263 KOG1127 TPR repeat-containing 98.3 2.7E-06 5.8E-11 85.5 9.5 115 335-449 563-677 (1238)
264 KOG3609 Receptor-activated Ca2 98.3 3E-06 6.5E-11 84.1 9.5 124 88-217 23-160 (822)
265 PF13431 TPR_17: Tetratricopep 98.3 7.5E-07 1.6E-11 52.1 3.3 32 391-422 2-33 (34)
266 KOG1174 Anaphase-promoting com 98.3 4.5E-06 9.8E-11 76.1 9.6 112 332-443 298-409 (564)
267 KOG1127 TPR repeat-containing 98.3 2.8E-06 6E-11 85.4 8.3 121 334-454 492-648 (1238)
268 PF04733 Coatomer_E: Coatomer 98.2 2.3E-05 4.9E-10 71.6 13.3 117 336-452 133-251 (290)
269 PF13428 TPR_14: Tetratricopep 98.2 1.9E-06 4.2E-11 54.0 4.4 43 402-444 1-43 (44)
270 PRK14720 transcript cleavage f 98.2 1.5E-05 3.2E-10 82.1 13.1 113 335-448 117-269 (906)
271 KOG0495 HAT repeat protein [RN 98.2 8E-06 1.7E-10 78.7 10.3 116 338-453 655-770 (913)
272 PF13431 TPR_17: Tetratricopep 98.2 9.7E-07 2.1E-11 51.6 2.3 34 356-389 1-34 (34)
273 PF00515 TPR_1: Tetratricopept 98.2 2.7E-06 5.8E-11 50.0 4.2 32 369-400 2-33 (34)
274 PLN03077 Protein ECB2; Provisi 98.2 0.0029 6.2E-08 67.9 29.9 393 16-451 328-766 (857)
275 PF13525 YfiO: Outer membrane 98.2 2.8E-05 6E-10 67.4 11.9 120 334-453 42-195 (203)
276 PRK10866 outer membrane biogen 98.2 3.6E-05 7.8E-10 68.4 12.6 122 334-455 69-231 (243)
277 KOG4648 Uncharacterized conser 98.2 3.2E-06 6.9E-11 75.2 5.6 86 371-456 100-185 (536)
278 PF12569 NARP1: NMDA receptor- 98.2 4.2E-05 9.1E-10 75.1 13.9 86 370-455 196-281 (517)
279 KOG0495 HAT repeat protein [RN 98.1 5.4E-05 1.2E-09 73.2 13.1 108 342-450 626-733 (913)
280 PF12569 NARP1: NMDA receptor- 98.1 1.1E-05 2.4E-10 79.1 8.8 99 334-432 194-292 (517)
281 PF00515 TPR_1: Tetratricopept 98.1 4.4E-06 9.4E-11 49.1 3.7 34 402-435 1-34 (34)
282 PLN03218 maturation of RBCL 1; 98.1 0.0021 4.5E-08 69.1 26.2 331 98-453 417-771 (1060)
283 PF03704 BTAD: Bacterial trans 98.1 0.00011 2.4E-09 60.1 13.3 98 332-429 4-123 (146)
284 KOG2384 Major histocompatibili 98.1 1E-05 2.3E-10 65.6 6.5 70 80-149 2-72 (223)
285 KOG3785 Uncharacterized conser 98.1 2.4E-05 5.1E-10 70.2 9.3 113 340-452 63-201 (557)
286 PF07719 TPR_2: Tetratricopept 98.0 1.1E-05 2.4E-10 47.4 4.8 32 369-400 2-33 (34)
287 PF07719 TPR_2: Tetratricopept 98.0 9.4E-06 2E-10 47.6 4.0 34 402-435 1-34 (34)
288 PF04733 Coatomer_E: Coatomer 98.0 4.6E-05 1E-09 69.6 10.2 92 348-439 181-273 (290)
289 KOG0521 Putative GTPase activa 98.0 6.7E-06 1.4E-10 84.0 4.8 81 56-137 656-736 (785)
290 KOG4555 TPR repeat-containing 98.0 4.2E-05 9.2E-10 58.5 7.7 81 373-453 48-132 (175)
291 KOG0546 HSP90 co-chaperone CPR 98.0 1.1E-05 2.4E-10 72.4 5.4 126 329-454 217-361 (372)
292 KOG2384 Major histocompatibili 97.9 2.6E-05 5.6E-10 63.4 6.2 74 178-251 2-77 (223)
293 KOG2376 Signal recognition par 97.9 0.0001 2.2E-09 70.6 10.9 115 335-453 13-127 (652)
294 KOG0521 Putative GTPase activa 97.9 1.1E-05 2.4E-10 82.3 4.8 88 186-273 654-742 (785)
295 COG1729 Uncharacterized protei 97.9 7.6E-05 1.6E-09 65.4 9.1 85 371-455 144-234 (262)
296 PF12968 DUF3856: Domain of Un 97.9 0.00021 4.5E-09 53.7 9.6 94 337-430 12-128 (144)
297 COG4105 ComL DNA uptake lipopr 97.9 0.00056 1.2E-08 59.4 13.7 102 334-435 34-149 (254)
298 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 7.8E-05 1.7E-09 48.1 6.4 49 403-451 2-50 (53)
299 KOG0520 Uncharacterized conser 97.9 3.5E-05 7.5E-10 78.5 7.2 128 49-177 567-702 (975)
300 KOG0511 Ankyrin repeat protein 97.8 4.6E-05 1E-09 68.5 7.1 66 91-156 37-102 (516)
301 KOG4642 Chaperone-dependent E3 97.8 2.6E-05 5.5E-10 66.2 5.1 81 374-454 16-96 (284)
302 PF14938 SNAP: Soluble NSF att 97.8 0.00022 4.9E-09 65.3 11.7 119 332-451 112-247 (282)
303 COG4785 NlpI Lipoprotein NlpI, 97.8 3E-05 6.6E-10 64.8 4.8 86 367-452 64-149 (297)
304 PF13512 TPR_18: Tetratricopep 97.8 0.00013 2.8E-09 57.7 8.0 84 367-450 9-98 (142)
305 COG3071 HemY Uncharacterized e 97.8 0.0008 1.7E-08 61.7 13.8 125 330-454 80-205 (400)
306 KOG2376 Signal recognition par 97.8 0.00047 1E-08 66.1 12.8 115 338-455 83-243 (652)
307 PF15015 NYD-SP12_N: Spermatog 97.7 0.00046 9.9E-09 63.5 11.4 104 326-429 168-289 (569)
308 KOG4507 Uncharacterized conser 97.7 0.00013 2.9E-09 69.6 8.2 106 340-445 612-719 (886)
309 PF06552 TOM20_plant: Plant sp 97.7 0.00024 5.2E-09 58.1 8.5 76 328-403 26-115 (186)
310 KOG4340 Uncharacterized conser 97.7 0.00011 2.3E-09 64.6 6.3 94 334-427 144-266 (459)
311 PF14938 SNAP: Soluble NSF att 97.7 0.00022 4.8E-09 65.3 8.7 99 332-431 73-184 (282)
312 KOG0520 Uncharacterized conser 97.6 5.3E-05 1.1E-09 77.2 4.5 119 157-275 576-702 (975)
313 PF13181 TPR_8: Tetratricopept 97.6 0.00011 2.3E-09 43.0 4.0 32 369-400 2-33 (34)
314 KOG3785 Uncharacterized conser 97.6 0.00082 1.8E-08 60.6 10.8 86 343-428 31-117 (557)
315 KOG1130 Predicted G-alpha GTPa 97.6 0.00014 3E-09 66.7 5.7 122 332-453 193-332 (639)
316 KOG3081 Vesicle coat complex C 97.5 0.0021 4.6E-08 55.8 12.3 75 349-423 188-262 (299)
317 KOG3364 Membrane protein invol 97.5 0.0019 4.2E-08 49.9 10.7 85 367-451 31-120 (149)
318 COG4700 Uncharacterized protei 97.5 0.0016 3.4E-08 53.4 10.7 114 342-456 64-180 (251)
319 COG3118 Thioredoxin domain-con 97.5 0.0018 4E-08 57.3 11.9 116 335-450 135-286 (304)
320 PF13181 TPR_8: Tetratricopept 97.5 0.00013 2.9E-09 42.6 3.1 33 403-435 2-34 (34)
321 KOG2053 Mitochondrial inherita 97.5 0.00099 2.1E-08 67.0 10.9 111 342-453 17-127 (932)
322 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0043 9.3E-08 54.4 13.7 113 335-447 96-213 (291)
323 KOG4340 Uncharacterized conser 97.4 0.0022 4.7E-08 56.6 10.9 86 344-429 20-105 (459)
324 KOG2796 Uncharacterized conser 97.4 0.0018 4E-08 56.1 10.1 114 334-447 212-334 (366)
325 KOG1130 Predicted G-alpha GTPa 97.4 0.00027 5.9E-09 64.8 5.2 119 334-452 17-151 (639)
326 PRK10941 hypothetical protein; 97.4 0.0016 3.4E-08 58.4 10.0 71 371-441 184-254 (269)
327 COG3071 HemY Uncharacterized e 97.4 0.0013 2.7E-08 60.4 9.3 81 348-429 308-388 (400)
328 KOG3824 Huntingtin interacting 97.3 0.00076 1.7E-08 59.6 7.4 106 324-429 106-215 (472)
329 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0017 3.7E-08 42.0 6.9 44 369-412 2-45 (53)
330 KOG2505 Ankyrin repeat protein 97.2 0.00047 1E-08 64.5 5.2 75 196-273 399-480 (591)
331 KOG2471 TPR repeat-containing 97.2 0.00082 1.8E-08 63.1 6.6 114 334-447 240-380 (696)
332 KOG0545 Aryl-hydrocarbon recep 97.2 0.0053 1.1E-07 52.7 10.7 89 324-412 220-308 (329)
333 COG0457 NrfG FOG: TPR repeat [ 97.2 0.0066 1.4E-07 53.1 12.4 105 343-447 139-247 (291)
334 KOG4151 Myosin assembly protei 97.2 0.0027 6E-08 63.3 10.4 124 326-449 45-174 (748)
335 PF13174 TPR_6: Tetratricopept 97.2 0.00071 1.5E-08 39.1 3.8 31 404-434 2-32 (33)
336 COG4976 Predicted methyltransf 97.1 0.00072 1.6E-08 57.2 4.9 61 341-401 2-62 (287)
337 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0028 6.1E-08 56.8 8.9 84 371-454 84-171 (390)
338 PF04184 ST7: ST7 protein; In 97.1 0.0025 5.3E-08 60.5 8.5 73 370-442 261-336 (539)
339 KOG3081 Vesicle coat complex C 97.1 0.0079 1.7E-07 52.4 10.8 116 335-452 138-257 (299)
340 PF14561 TPR_20: Tetratricopep 97.1 0.005 1.1E-07 45.2 8.3 48 354-401 8-55 (90)
341 PF10300 DUF3808: Protein of u 97.1 0.0037 8E-08 61.4 10.0 96 335-430 268-375 (468)
342 PF13174 TPR_6: Tetratricopept 97.0 0.0013 2.7E-08 38.0 4.1 32 370-401 2-33 (33)
343 PF05843 Suf: Suppressor of fo 97.0 0.019 4.2E-07 52.4 13.7 115 337-451 4-122 (280)
344 COG4105 ComL DNA uptake lipopr 97.0 0.0032 6.9E-08 54.8 8.0 72 367-438 33-107 (254)
345 PF14561 TPR_20: Tetratricopep 97.0 0.0067 1.4E-07 44.5 8.5 68 386-453 6-75 (90)
346 KOG2796 Uncharacterized conser 97.0 0.0099 2.2E-07 51.7 10.6 117 337-453 180-303 (366)
347 KOG2610 Uncharacterized conser 97.0 0.0058 1.2E-07 54.9 9.4 117 338-454 107-227 (491)
348 PF04781 DUF627: Protein of un 97.0 0.0093 2E-07 44.8 9.1 92 340-431 2-107 (111)
349 KOG0376 Serine-threonine phosp 97.0 0.0013 2.8E-08 62.0 5.6 78 337-414 41-118 (476)
350 KOG1915 Cell cycle control pro 97.0 0.019 4E-07 54.2 13.0 116 334-450 73-188 (677)
351 KOG3824 Huntingtin interacting 97.0 0.0028 6E-08 56.2 7.2 73 375-447 123-195 (472)
352 COG4976 Predicted methyltransf 96.9 0.0013 2.8E-08 55.7 4.6 62 376-437 3-64 (287)
353 PRK10941 hypothetical protein; 96.9 0.017 3.8E-07 51.8 12.1 78 335-412 182-259 (269)
354 KOG1941 Acetylcholine receptor 96.9 0.0035 7.5E-08 56.9 7.4 118 335-452 123-262 (518)
355 COG2976 Uncharacterized protei 96.9 0.019 4E-07 47.8 10.9 99 335-435 90-192 (207)
356 KOG4814 Uncharacterized conser 96.9 0.0074 1.6E-07 58.8 9.8 99 332-430 352-456 (872)
357 smart00248 ANK ankyrin repeats 96.9 0.0022 4.8E-08 35.1 4.0 27 220-246 2-28 (30)
358 PF03704 BTAD: Bacterial trans 96.8 0.0083 1.8E-07 48.9 8.9 65 332-396 60-124 (146)
359 smart00028 TPR Tetratricopepti 96.8 0.0021 4.6E-08 36.4 3.9 30 370-399 3-32 (34)
360 PF03158 DUF249: Multigene fam 96.8 0.014 3E-07 47.8 9.4 72 92-170 48-119 (192)
361 PF13176 TPR_7: Tetratricopept 96.8 0.0023 5E-08 37.8 3.8 23 371-393 2-24 (36)
362 PF13176 TPR_7: Tetratricopept 96.8 0.0017 3.7E-08 38.4 3.0 28 404-431 1-28 (36)
363 smart00028 TPR Tetratricopepti 96.7 0.0032 6.9E-08 35.6 4.2 33 403-435 2-34 (34)
364 PF09613 HrpB1_HrpK: Bacterial 96.7 0.1 2.3E-06 42.3 14.0 115 332-448 8-122 (160)
365 smart00248 ANK ankyrin repeats 96.7 0.0036 7.7E-08 34.3 4.1 24 91-114 3-26 (30)
366 PF03158 DUF249: Multigene fam 96.7 0.02 4.2E-07 47.0 9.5 73 57-138 47-119 (192)
367 PF10300 DUF3808: Protein of u 96.6 0.025 5.4E-07 55.7 11.4 106 347-452 246-356 (468)
368 PRK04841 transcriptional regul 96.5 0.025 5.4E-07 61.2 12.4 121 334-454 452-591 (903)
369 KOG2396 HAT (Half-A-TPR) repea 96.5 0.031 6.8E-07 53.1 11.1 93 353-445 90-183 (568)
370 KOG1308 Hsp70-interacting prot 96.5 0.00041 9E-09 62.3 -1.1 76 380-455 126-201 (377)
371 PF09613 HrpB1_HrpK: Bacterial 96.4 0.049 1.1E-06 44.2 10.3 85 369-453 11-95 (160)
372 KOG2053 Mitochondrial inherita 96.4 0.058 1.3E-06 54.9 12.7 107 335-442 44-150 (932)
373 PRK04841 transcriptional regul 96.4 0.029 6.3E-07 60.8 11.7 120 334-453 491-629 (903)
374 KOG1586 Protein required for f 96.3 0.083 1.8E-06 45.3 11.3 104 338-441 77-193 (288)
375 KOG2505 Ankyrin repeat protein 96.1 0.0086 1.9E-07 56.4 4.7 62 69-131 404-471 (591)
376 PF04184 ST7: ST7 protein; In 96.0 0.17 3.6E-06 48.6 12.8 79 334-412 259-340 (539)
377 PRK13184 pknD serine/threonine 95.9 0.054 1.2E-06 57.1 10.2 113 338-451 479-601 (932)
378 PF10579 Rapsyn_N: Rapsyn N-te 95.9 0.072 1.6E-06 37.2 7.4 66 332-397 4-72 (80)
379 PF02259 FAT: FAT domain; Int 95.8 0.26 5.6E-06 46.7 14.2 123 331-453 143-309 (352)
380 KOG1941 Acetylcholine receptor 95.8 0.029 6.2E-07 51.2 6.8 97 335-431 163-275 (518)
381 PF06128 Shigella_OspC: Shigel 95.8 0.051 1.1E-06 46.0 7.8 112 126-244 156-278 (284)
382 PF05843 Suf: Suppressor of fo 95.7 0.12 2.5E-06 47.4 10.6 104 337-440 38-145 (280)
383 KOG1915 Cell cycle control pro 95.7 0.19 4E-06 47.8 11.6 108 345-453 377-488 (677)
384 KOG4507 Uncharacterized conser 95.7 0.026 5.6E-07 54.6 6.2 102 337-438 215-319 (886)
385 COG2912 Uncharacterized conser 95.6 0.07 1.5E-06 47.2 8.1 72 373-444 186-257 (269)
386 PF10602 RPN7: 26S proteasome 95.6 0.31 6.7E-06 41.0 11.8 102 331-432 33-143 (177)
387 KOG3364 Membrane protein invol 95.5 0.16 3.5E-06 39.6 8.9 76 335-410 33-113 (149)
388 KOG2471 TPR repeat-containing 95.5 0.027 5.8E-07 53.3 5.6 81 335-415 284-382 (696)
389 COG5191 Uncharacterized conser 95.4 0.038 8.2E-07 49.3 5.8 89 357-445 96-185 (435)
390 TIGR02561 HrpB1_HrpK type III 95.3 0.65 1.4E-05 37.2 11.8 92 334-425 10-101 (153)
391 PF06128 Shigella_OspC: Shigel 95.3 0.15 3.2E-06 43.4 8.7 45 135-179 229-278 (284)
392 KOG1586 Protein required for f 95.2 0.52 1.1E-05 40.7 11.7 100 337-436 116-229 (288)
393 KOG1070 rRNA processing protei 95.2 0.17 3.6E-06 54.3 10.6 108 341-448 1537-1646(1710)
394 COG3914 Spy Predicted O-linked 95.2 0.28 6E-06 48.0 11.3 106 340-445 73-185 (620)
395 TIGR02561 HrpB1_HrpK type III 95.2 0.28 6E-06 39.2 9.4 81 373-453 15-95 (153)
396 PF09986 DUF2225: Uncharacteri 95.1 0.34 7.4E-06 42.1 10.8 90 343-432 86-195 (214)
397 PF12862 Apc5: Anaphase-promot 95.1 0.23 5E-06 36.8 8.6 29 403-431 42-70 (94)
398 KOG1585 Protein required for f 95.0 0.36 7.7E-06 41.9 10.3 122 333-454 30-168 (308)
399 KOG2610 Uncharacterized conser 95.0 0.16 3.6E-06 45.9 8.7 84 346-429 187-274 (491)
400 PF13374 TPR_10: Tetratricopep 95.0 0.054 1.2E-06 32.9 4.2 29 369-397 3-31 (42)
401 KOG0985 Vesicle coat protein c 95.0 4.5 9.8E-05 42.7 19.4 162 256-449 1139-1326(1666)
402 PF12862 Apc5: Anaphase-promot 94.8 0.08 1.7E-06 39.3 5.4 57 343-399 7-72 (94)
403 PF13281 DUF4071: Domain of un 94.7 0.54 1.2E-05 44.2 11.7 98 338-435 145-259 (374)
404 PF02259 FAT: FAT domain; Int 94.7 0.42 9E-06 45.3 11.5 99 336-434 186-341 (352)
405 KOG0530 Protein farnesyltransf 94.6 0.52 1.1E-05 41.4 10.4 107 345-451 54-162 (318)
406 KOG1585 Protein required for f 94.5 0.52 1.1E-05 41.0 10.0 112 335-446 111-238 (308)
407 PF10373 EST1_DNA_bind: Est1 D 94.4 0.2 4.3E-06 45.8 8.2 62 353-414 1-62 (278)
408 PF08424 NRDE-2: NRDE-2, neces 94.3 0.54 1.2E-05 43.9 10.9 88 356-443 7-106 (321)
409 COG3118 Thioredoxin domain-con 94.2 0.53 1.1E-05 42.2 9.9 59 369-427 135-193 (304)
410 PF13374 TPR_10: Tetratricopep 94.1 0.077 1.7E-06 32.2 3.4 30 402-431 2-31 (42)
411 PF07079 DUF1347: Protein of u 94.1 2.8 6E-05 40.0 14.6 53 375-428 469-521 (549)
412 COG2912 Uncharacterized conser 94.0 0.27 5.8E-06 43.6 7.7 74 339-412 186-259 (269)
413 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.12 2.7E-06 30.7 3.8 28 370-397 3-30 (38)
414 COG0790 FOG: TPR repeat, SEL1 93.9 1.4 3.1E-05 40.5 13.0 107 335-445 110-232 (292)
415 COG3914 Spy Predicted O-linked 93.9 0.58 1.3E-05 45.8 10.2 99 349-447 46-147 (620)
416 COG2976 Uncharacterized protei 93.8 1.8 3.9E-05 36.4 11.7 83 370-454 91-177 (207)
417 PF07720 TPR_3: Tetratricopept 93.7 0.16 3.4E-06 29.8 3.9 30 404-433 3-34 (36)
418 PF11929 DUF3447: Domain of un 93.6 0.25 5.4E-06 34.9 5.7 48 16-79 8-55 (76)
419 KOG0529 Protein geranylgeranyl 93.3 2 4.3E-05 40.4 12.2 105 345-449 86-196 (421)
420 KOG1310 WD40 repeat protein [G 93.3 0.29 6.3E-06 47.1 7.0 76 381-456 387-465 (758)
421 PF07721 TPR_4: Tetratricopept 93.2 0.13 2.8E-06 27.6 2.8 24 403-426 2-25 (26)
422 PF10516 SHNi-TPR: SHNi-TPR; 93.1 0.13 2.9E-06 30.5 3.0 29 403-431 2-30 (38)
423 PF08631 SPO22: Meiosis protei 93.0 3.9 8.5E-05 37.3 14.0 106 327-432 28-151 (278)
424 KOG1550 Extracellular protein 92.9 1.4 3E-05 44.6 11.9 80 349-432 308-394 (552)
425 KOG1070 rRNA processing protei 92.8 1.6 3.5E-05 47.3 12.2 113 333-445 1563-1677(1710)
426 PF07720 TPR_3: Tetratricopept 92.7 0.42 9.1E-06 28.0 4.7 32 369-400 2-35 (36)
427 PF07079 DUF1347: Protein of u 92.7 0.68 1.5E-05 44.0 8.4 62 333-395 461-522 (549)
428 KOG3617 WD40 and TPR repeat-co 92.3 0.71 1.5E-05 47.1 8.5 125 330-454 815-985 (1416)
429 PF10373 EST1_DNA_bind: Est1 D 92.2 1.9 4.1E-05 39.2 11.1 62 387-448 1-62 (278)
430 PRK15180 Vi polysaccharide bio 92.2 1 2.2E-05 43.0 9.0 91 341-431 296-386 (831)
431 COG3629 DnrI DNA-binding trans 92.1 1.5 3.3E-05 39.5 9.8 63 368-430 153-215 (280)
432 cd02682 MIT_AAA_Arch MIT: doma 92.1 0.59 1.3E-05 32.6 5.6 32 331-362 3-34 (75)
433 PF07721 TPR_4: Tetratricopept 91.9 0.24 5.2E-06 26.6 2.9 24 369-392 2-25 (26)
434 KOG4814 Uncharacterized conser 91.8 1.9 4.2E-05 42.8 10.5 77 369-445 355-437 (872)
435 TIGR03504 FimV_Cterm FimV C-te 91.6 0.65 1.4E-05 28.7 4.8 25 406-430 3-27 (44)
436 PF11929 DUF3447: Domain of un 91.6 0.37 8.1E-06 34.0 4.3 47 58-112 8-54 (76)
437 COG3629 DnrI DNA-binding trans 91.5 1.1 2.4E-05 40.4 8.1 66 332-397 151-216 (280)
438 PF09986 DUF2225: Uncharacteri 91.1 1.6 3.4E-05 38.0 8.6 62 350-411 141-209 (214)
439 KOG1258 mRNA processing protei 91.0 5 0.00011 39.7 12.5 126 328-453 291-417 (577)
440 PF04781 DUF627: Protein of un 90.5 4.7 0.0001 30.6 9.3 72 374-445 2-87 (111)
441 PF04910 Tcf25: Transcriptiona 90.4 2.2 4.9E-05 40.4 9.7 112 324-435 93-226 (360)
442 PRK13184 pknD serine/threonine 90.0 5 0.00011 42.9 12.6 105 335-440 520-629 (932)
443 PF04910 Tcf25: Transcriptiona 89.9 2.3 4.9E-05 40.4 9.3 32 364-395 36-67 (360)
444 PF08631 SPO22: Meiosis protei 89.8 5 0.00011 36.6 11.2 97 343-439 2-124 (278)
445 KOG2047 mRNA splicing factor [ 89.8 17 0.00037 36.6 14.8 113 329-441 420-552 (835)
446 KOG1550 Extracellular protein 89.7 4.2 9.1E-05 41.2 11.6 92 337-432 328-427 (552)
447 COG3898 Uncharacterized membra 89.7 3.6 7.9E-05 38.5 9.8 94 344-439 198-299 (531)
448 COG4649 Uncharacterized protei 89.4 11 0.00024 31.2 11.3 114 335-449 95-213 (221)
449 PF14863 Alkyl_sulf_dimr: Alky 89.4 1.6 3.4E-05 35.0 6.5 50 369-418 71-120 (141)
450 COG0790 FOG: TPR repeat, SEL1 89.3 5.4 0.00012 36.6 11.3 84 344-431 51-142 (292)
451 PHA02537 M terminase endonucle 88.6 0.94 2E-05 39.5 5.2 108 344-452 93-227 (230)
452 KOG2300 Uncharacterized conser 88.6 8.7 0.00019 37.2 11.6 96 334-432 367-475 (629)
453 PF14863 Alkyl_sulf_dimr: Alky 88.6 1 2.2E-05 36.0 5.0 51 334-384 70-120 (141)
454 PF11207 DUF2989: Protein of u 88.6 4.9 0.00011 34.2 9.2 77 345-422 117-198 (203)
455 KOG3617 WD40 and TPR repeat-co 88.4 4.1 9E-05 41.9 10.0 95 336-430 860-995 (1416)
456 PF13281 DUF4071: Domain of un 88.3 15 0.00033 34.8 13.2 85 367-451 140-232 (374)
457 KOG0546 HSP90 co-chaperone CPR 88.1 0.77 1.7E-05 42.2 4.5 86 334-419 275-360 (372)
458 KOG2396 HAT (Half-A-TPR) repea 88.1 2.5 5.5E-05 40.8 8.0 61 346-406 117-178 (568)
459 KOG3807 Predicted membrane pro 88.1 11 0.00023 34.7 11.4 89 343-433 193-306 (556)
460 PF10255 Paf67: RNA polymerase 88.0 1 2.3E-05 42.9 5.5 59 337-396 125-192 (404)
461 KOG0529 Protein geranylgeranyl 87.5 11 0.00023 35.8 11.5 108 345-452 39-161 (421)
462 COG2909 MalT ATP-dependent tra 87.2 19 0.00042 37.7 14.0 98 334-431 415-526 (894)
463 COG3898 Uncharacterized membra 87.1 13 0.00029 35.0 11.6 92 337-430 123-216 (531)
464 PF10602 RPN7: 26S proteasome 87.0 7.1 0.00015 32.8 9.5 64 368-431 36-102 (177)
465 cd02681 MIT_calpain7_1 MIT: do 86.7 1.2 2.7E-05 31.3 3.9 33 331-363 3-35 (76)
466 PF10255 Paf67: RNA polymerase 86.2 1.6 3.4E-05 41.7 5.6 57 374-430 128-192 (404)
467 PF12968 DUF3856: Domain of Un 86.1 4.1 8.8E-05 31.3 6.5 86 369-454 8-118 (144)
468 PRK15180 Vi polysaccharide bio 85.9 2.3 5E-05 40.8 6.4 96 340-435 329-424 (831)
469 COG4455 ImpE Protein of avirul 85.8 8.9 0.00019 33.0 9.1 62 341-402 8-69 (273)
470 TIGR03504 FimV_Cterm FimV C-te 85.8 1.7 3.6E-05 26.8 3.7 26 371-396 2-27 (44)
471 COG4941 Predicted RNA polymera 85.6 6.1 0.00013 36.2 8.6 98 347-445 309-408 (415)
472 KOG4563 Cell cycle-regulated h 85.4 3 6.5E-05 38.5 6.7 67 323-389 30-104 (400)
473 KOG0530 Protein farnesyltransf 85.3 6.1 0.00013 35.0 8.2 79 350-428 94-173 (318)
474 COG3947 Response regulator con 85.2 3.1 6.8E-05 37.3 6.5 58 370-427 281-338 (361)
475 PF15015 NYD-SP12_N: Spermatog 85.2 2.3 5E-05 40.1 5.9 78 380-457 195-283 (569)
476 PF08424 NRDE-2: NRDE-2, neces 85.1 9.8 0.00021 35.6 10.4 81 350-430 47-130 (321)
477 COG3947 Response regulator con 84.8 2.8 6E-05 37.6 6.0 57 337-393 282-338 (361)
478 COG5191 Uncharacterized conser 84.2 2.2 4.8E-05 38.5 5.2 70 337-406 110-180 (435)
479 KOG1839 Uncharacterized protei 84.0 2.9 6.2E-05 45.2 6.8 122 331-453 929-1074(1236)
480 smart00386 HAT HAT (Half-A-TPR 83.7 2 4.2E-05 23.9 3.3 28 348-375 1-28 (33)
481 cd02683 MIT_1 MIT: domain cont 83.2 14 0.0003 26.1 9.5 31 332-362 4-34 (77)
482 PF04053 Coatomer_WDAD: Coatom 83.1 12 0.00027 36.5 10.4 25 336-360 349-373 (443)
483 PF04212 MIT: MIT (microtubule 83.0 2.5 5.5E-05 29.0 4.2 31 332-362 3-33 (69)
484 KOG0686 COP9 signalosome, subu 82.7 16 0.00034 34.7 10.1 97 334-430 150-257 (466)
485 KOG2047 mRNA splicing factor [ 82.7 26 0.00057 35.4 12.1 97 337-433 480-581 (835)
486 cd02682 MIT_AAA_Arch MIT: doma 82.1 11 0.00024 26.4 6.9 38 371-408 9-53 (75)
487 PRK15490 Vi polysaccharide bio 81.9 38 0.00082 34.2 13.2 84 341-426 15-98 (578)
488 cd02680 MIT_calpain7_2 MIT: do 81.8 2.1 4.5E-05 30.0 3.3 32 332-363 4-35 (75)
489 PF10345 Cohesin_load: Cohesin 81.2 43 0.00094 34.5 14.1 110 331-441 56-180 (608)
490 KOG0985 Vesicle coat protein c 81.1 9.3 0.0002 40.5 8.8 61 366-431 1102-1162(1666)
491 COG2909 MalT ATP-dependent tra 81.0 79 0.0017 33.4 19.0 86 331-416 455-551 (894)
492 PF07219 HemY_N: HemY protein 80.2 9.9 0.00021 28.9 6.9 54 330-383 55-108 (108)
493 COG4455 ImpE Protein of avirul 79.8 13 0.00028 32.1 7.9 61 376-436 9-69 (273)
494 PF09670 Cas_Cas02710: CRISPR- 79.2 61 0.0013 31.1 13.5 67 331-397 128-198 (379)
495 KOG1839 Uncharacterized protei 78.2 18 0.00039 39.5 10.2 121 332-452 971-1115(1236)
496 TIGR02710 CRISPR-associated pr 78.1 32 0.00068 32.8 10.8 61 332-392 128-195 (380)
497 KOG1914 mRNA cleavage and poly 77.7 13 0.00029 36.5 8.2 69 360-429 12-80 (656)
498 cd02678 MIT_VPS4 MIT: domain c 77.2 4.5 9.8E-05 28.4 3.9 31 332-362 4-34 (75)
499 smart00386 HAT HAT (Half-A-TPR 77.1 4.9 0.00011 22.1 3.6 26 417-442 2-27 (33)
500 PF11207 DUF2989: Protein of u 76.8 5.9 0.00013 33.7 5.1 52 337-389 144-199 (203)
No 1
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=2.4e-39 Score=315.35 Aligned_cols=286 Identities=24% Similarity=0.345 Sum_probs=246.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 012683 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95 (458)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~ 95 (458)
..|..|+..||++.|++|++. .+...+..+..|.||||.|+..|+.++|++|++. |++++..+..|.||||
T Consensus 3 ~~l~~ai~~gd~~~v~~ll~~--------~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~~~~~~t~L~ 73 (434)
T PHA02874 3 QDLRMCIYSGDIEAIEKIIKN--------KGNCINISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHINTKIPHPLL 73 (434)
T ss_pred HHHHHHHhcCCHHHHHHHHHc--------CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHH
Confidence 368899999999999999976 2223456677899999999999999999999997 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCC-----------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 012683 96 HAARQGHTETAKYLFEHGAN-----------------------PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE 152 (458)
Q Consensus 96 ~A~~~g~~~~v~~Ll~~~~~-----------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~ 152 (458)
.|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++.|++++..
T Consensus 74 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~ 153 (434)
T PHA02874 74 TAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE 153 (434)
T ss_pred HHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc
Confidence 99999999999999987654 5567889999999999999999999999999999877
Q ss_pred CCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc
Q 012683 153 SDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI 230 (458)
Q Consensus 153 ~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~ 230 (458)
+..+ ||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.. ..|.||||.|+..
T Consensus 154 d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~ 233 (434)
T PHA02874 154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH 233 (434)
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHC
Confidence 6655 9999999999999999999999999999999999999999999999999999999999877 7799999999998
Q ss_pred CcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhh
Q 012683 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG-NREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLK 309 (458)
Q Consensus 231 ~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (458)
+. +++.+|+ .|++++.+|..|+||||+|+..+ +.+++++|+.++.+. +..+..+.+++.++.... .....+..++
T Consensus 234 ~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~-n~~d~~g~TpL~~A~~~~-~~~~~ik~ll 309 (434)
T PHA02874 234 NR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADI-SIKDNKGENPIDTAFKYI-NKDPVIKDII 309 (434)
T ss_pred Ch-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHhC-CccHHHHHHH
Confidence 65 5677776 58999999999999999999876 899999999987654 445555666666554322 2344556666
Q ss_pred cCCCC
Q 012683 310 ENNAP 314 (458)
Q Consensus 310 ~~~~~ 314 (458)
.....
T Consensus 310 ~~~~~ 314 (434)
T PHA02874 310 ANAVL 314 (434)
T ss_pred HhcCc
Confidence 65543
No 2
>PHA03100 ankyrin repeat protein; Provisional
Probab=100.00 E-value=7e-40 Score=324.63 Aligned_cols=258 Identities=29% Similarity=0.465 Sum_probs=239.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHH-----HHHcCCHHHHHHHHHhCCCCCCC
Q 012683 11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHF-----AAREGKTDVCKYLLEELKLDVDT 85 (458)
Q Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~-----A~~~g~~~~v~~ll~~~~~~~~~ 85 (458)
.+...++||.|+..|+.++|+.|++. |..+ +..+..|.||||+ |+..|+.+++++|++. |++++.
T Consensus 32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~----g~~~-----~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i~~ 101 (480)
T PHA03100 32 YKKPVLPLYLAKEARNIDVVKILLDN----GADI-----NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNA 101 (480)
T ss_pred hcccchhhhhhhccCCHHHHHHHHHc----CCCC-----CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCCCC
Confidence 34567899999999999999999986 3332 4567789999999 9999999999999997 999999
Q ss_pred CCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCC-cHHH
Q 012683 86 QDEDGETPLLHAA--RQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG--NIELLTYLLSKGAEVDSESDAG-TPLI 160 (458)
Q Consensus 86 ~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~-t~l~ 160 (458)
.+..|.||||+|+ ..|+.+++++|+++|++++..+..|.||||.|+..| +.+++++|++.|++++..+..+ ||||
T Consensus 102 ~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~ 181 (480)
T PHA03100 102 PDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLH 181 (480)
T ss_pred CCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHH
Confidence 9999999999999 999999999999999999999999999999999999 9999999999999998766544 9999
Q ss_pred HHHhCCCHHHHHHHHhcCCCCCCCCCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcC
Q 012683 161 WAAGHGQQEAVKVLLEHHANPNAETEDN------ITPLLSAVAAGS--LTCLDLLIQAGANANIV-AGGATPLHIAADIG 231 (458)
Q Consensus 161 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~------~t~l~~a~~~~~--~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~ 231 (458)
+|+..|+.+++++|+++|++++..+..| .||+|.|+..|+ .+++++|++.|++++.. ..|.||||+|+..|
T Consensus 182 ~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~ 261 (480)
T PHA03100 182 IAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNN 261 (480)
T ss_pred HHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 9999999999999999999999998888 899999999999 99999999999999987 77999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 232 STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 232 ~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
+.+++++|+++|++++.+|..|.||+|+|+..++.+++++|+++++.
T Consensus 262 ~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~ 308 (480)
T PHA03100 262 NPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 308 (480)
T ss_pred CHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999998874
No 3
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=309.80 Aligned_cols=256 Identities=27% Similarity=0.398 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHh--------------
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE-------------- 78 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~-------------- 78 (458)
.+.++||.|+..|+.++|++|++. |+.+ +..+..|.||||.|+..|+.+++++|++.
T Consensus 34 ~~~tpL~~A~~~g~~~iv~~Ll~~----Ga~~-----n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~ 104 (434)
T PHA02874 34 ETTTPLIDAIRSGDAKIVELFIKH----GADI-----NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEK 104 (434)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC----CCCC-----CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCH
Confidence 456899999999999999999986 3333 45677899999999999999999999875
Q ss_pred --------CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 012683 79 --------LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD 150 (458)
Q Consensus 79 --------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~ 150 (458)
.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 105 ~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n 184 (434)
T PHA02874 105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184 (434)
T ss_pred HHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence 134567788899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHH
Q 012683 151 SESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAA 228 (458)
Q Consensus 151 ~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~ 228 (458)
..+..+ ||||+|+..|+.+++++|++.|.+++..+..|.||||.|+..+. +.+.+|+ .|++++.. ..|.||||+|+
T Consensus 185 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~ 262 (434)
T PHA02874 185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAI 262 (434)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHH
Confidence 766555 99999999999999999999999999999999999999999865 5666666 58888877 77999999999
Q ss_pred hcC-cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHhhcCCCCCC
Q 012683 229 DIG-STEIIKCLLKAGADPNVTDEDGQKPIQVAAARG-NREAVEILFPLTSED 279 (458)
Q Consensus 229 ~~~-~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~ 279 (458)
..+ +.+++++|+++|++++.+|..|+||||+|+.++ +.++++.|+..+...
T Consensus 263 ~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~ 315 (434)
T PHA02874 263 NPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLI 315 (434)
T ss_pred hcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCch
Confidence 876 899999999999999999999999999999987 778899999876543
No 4
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=7.5e-39 Score=287.86 Aligned_cols=232 Identities=17% Similarity=0.171 Sum_probs=206.9
Q ss_pred cCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683 24 TGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT 103 (458)
Q Consensus 24 ~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~ 103 (458)
.++.++++.|++. ++ +..|.+|.||||+|+..|+.+++++|++. |++++..+ |.||||+|+..|+.
T Consensus 9 ~~~~~~~~~Lis~----~a-------~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~d--~~TpLh~Aa~~g~~ 74 (284)
T PHA02791 9 WKSKQLKSFLSSK----DA-------FKADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLLE--NEFPLHQAATLEDT 74 (284)
T ss_pred cCHHHHHHHHHhC----CC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCCC--CCCHHHHHHHCCCH
Confidence 4678888988875 21 35788999999999999999999999997 88887754 78999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--cHHHHHHhCCCHHHHHHHHhcCCCC
Q 012683 104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANP 181 (458)
Q Consensus 104 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--t~l~~A~~~~~~~~~~~Ll~~~~~~ 181 (458)
+++++|++.|++++..|..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|++++.+.
T Consensus 75 eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~ 154 (284)
T PHA02791 75 KIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 154 (284)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999998766543 8999999999999999999987543
Q ss_pred CCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcH-HHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683 182 NAET-EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP-LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258 (458)
Q Consensus 182 ~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~-L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~ 258 (458)
.+ ..|.||||+|+..|+.++++.|+++|++++.. ..|.|| ||+|+..|+.++|++|+++|++++.+|..| +++
T Consensus 155 --~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l- 230 (284)
T PHA02791 155 --FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL- 230 (284)
T ss_pred --cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC-
Confidence 23 35899999999999999999999999999987 557766 999999999999999999999999999854 555
Q ss_pred HHHHcCCHHHHHhhcCCCCC
Q 012683 259 VAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 259 ~A~~~~~~~~v~~Ll~~~~~ 278 (458)
++.|++++|+++..+
T Consensus 231 -----~~~e~~~~ll~~~~~ 245 (284)
T PHA02791 231 -----DDAEIAKMIIEKHVE 245 (284)
T ss_pred -----CCHHHHHHHHHhhhh
Confidence 889999999987653
No 5
>PHA02946 ankyin-like protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=299.46 Aligned_cols=251 Identities=19% Similarity=0.288 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCCCCC
Q 012683 10 AVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR--EGKTDVCKYLLEELKLDVDTQD 87 (458)
Q Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~ 87 (458)
.+..+.-+++.++..|+.+.++.+++.... ..+.++||.++. .++.++|++|+++ |++++.+|
T Consensus 5 ~~~~~~~sl~~~~~~~n~~~~~~~l~~~~~--------------~g~~~~Lh~~~~~~~~~~~iv~~Ll~~-Gadvn~~d 69 (446)
T PHA02946 5 MSAEYYLSLYAKYNSKNLDVFRNMLQAIEP--------------SGNYHILHAYCGIKGLDERFVEELLHR-GYSPNETD 69 (446)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHhccCC--------------CCCChHHHHHHHhcCCCHHHHHHHHHC-cCCCCccC
Confidence 455666677777777777777777654111 113466666543 2345666666665 66666666
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCC-CC-CCCcHHHHHH
Q 012683 88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG--NIELLTYLLSKGAEVDS-ES-DAGTPLIWAA 163 (458)
Q Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~-~~-~~~t~l~~A~ 163 (458)
..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..+ ..+++++|++.|++++. .+ .+.|||+ |+
T Consensus 70 ~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa 148 (446)
T PHA02946 70 DDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-AC 148 (446)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HH
Confidence 66777777777777777777777777776666666777777666544 35666667776666653 22 3336665 44
Q ss_pred hCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcC--cHHHHHH
Q 012683 164 GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS--LTCLDLLIQAGANANIV-AGGATPLHIAADIG--STEIIKC 238 (458)
Q Consensus 164 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~--~~~iv~~ 238 (458)
..++.+++++|++.|++++..+..|+||||.|+..++ .+++++|+++|++++.. ..|+||||+|+..| +.+++++
T Consensus 149 ~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~l 228 (446)
T PHA02946 149 TDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINL 228 (446)
T ss_pred HCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHH
Confidence 5566666777777666666666667777766655433 46666677777666655 45667777776654 5666666
Q ss_pred HHHcCCCCCCCCCCCCcHHHHHHHcCC-HHHHHhhcCCCC
Q 012683 239 LLKAGADPNVTDEDGQKPIQVAAARGN-REAVEILFPLTS 277 (458)
Q Consensus 239 Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~~ 277 (458)
|++ |++++.+|..|+||||+|+..++ .+++++|+.++.
T Consensus 229 Ll~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~ 267 (446)
T PHA02946 229 LLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN 267 (446)
T ss_pred HHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence 664 66666666677777777666665 366666666654
No 6
>PHA03095 ankyrin-like protein; Provisional
Probab=100.00 E-value=3.3e-38 Score=312.08 Aligned_cols=285 Identities=24% Similarity=0.281 Sum_probs=229.0
Q ss_pred HHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcC---CHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683 18 FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG---KTDVCKYLLEELKLDVDTQDEDGETPL 94 (458)
Q Consensus 18 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~g~t~L 94 (458)
.+.++..+++++|+.|++. |+++ +..+..|.||||+|+..| +.+++++|++. |++++.++..|.|||
T Consensus 18 ~~~~~~~~~~~~v~~Ll~~----ga~v-----n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~~~~g~TpL 87 (471)
T PHA03095 18 YLLNASNVTVEEVRRLLAA----GADV-----NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAPERCGFTPL 87 (471)
T ss_pred HHHcCCCCCHHHHHHHHHc----CCCc-----ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence 3667888889999988876 3333 566778889999999888 88889988887 888888888899999
Q ss_pred HHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCC--CH
Q 012683 95 LHAARQG-HTETAKYLFEHGANPTIPSNLGATALHHSA--GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--QQ 168 (458)
Q Consensus 95 ~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~--~~ 168 (458)
|+|+..| +.+++++|+++|++++..+..|.||||+|+ ..++.+++++|++.|++++..+..+ ||||+|+..+ +.
T Consensus 88 h~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~ 167 (471)
T PHA03095 88 HLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANV 167 (471)
T ss_pred HHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCH
Confidence 9999988 588999999999998888888999999988 4567888999999988888766555 8998888765 57
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcH--HHHHHHHHcC
Q 012683 169 EAVKVLLEHHANPNAETEDNITPLLSAVAA--GSLTCLDLLIQAGANANIV-AGGATPLHIAADIGST--EIIKCLLKAG 243 (458)
Q Consensus 169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~--~iv~~Ll~~g 243 (458)
+++++|+++|++++..+..|.||||.++.. ++.++++.|++.|++++.. ..|+||||+|+..|+. .+++.|++.|
T Consensus 168 ~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g 247 (471)
T PHA03095 168 ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAG 247 (471)
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcC
Confidence 888999998888888888888999888765 6778888888988888877 6788999999888864 5788888888
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCC
Q 012683 244 ADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPK 315 (458)
Q Consensus 244 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (458)
++++.+|..|+||||+|+..|+.+++++|+++|++ ++..+..+.+++.++ ......+.+..++..++..
T Consensus 248 ~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A--~~~~~~~~v~~LL~~~~~~ 316 (471)
T PHA03095 248 ISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLM--VRNNNGRAVRAALAKNPSA 316 (471)
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHH--HHhCCHHHHHHHHHhCCCH
Confidence 88888888899999999988889999998888754 344444455554443 4445667777777776654
No 7
>PHA03100 ankyrin repeat protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=312.84 Aligned_cols=278 Identities=27% Similarity=0.345 Sum_probs=248.9
Q ss_pred ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHH-----HHHc
Q 012683 26 NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH-----AARQ 100 (458)
Q Consensus 26 ~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-----A~~~ 100 (458)
..++++++++. ....+..+..+.||||.|+..|+.++|++|++. |++++..+..+.||||+ |+..
T Consensus 14 ~~~~~~~~~~~---------~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~-g~~~~~~~~~~~t~L~~~~~~~a~~~ 83 (480)
T PHA03100 14 KVKNIKYIIME---------DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKYNLT 83 (480)
T ss_pred HHHHHHHHHhc---------CccchhhhcccchhhhhhhccCCHHHHHHHHHc-CCCCCCccccCcCHHHHHHHHHHHhh
Confidence 34556666643 133456778899999999999999999999998 99999999999999999 9999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCC--CHHHHHHHH
Q 012683 101 GHTETAKYLFEHGANPTIPSNLGATALHHSA--GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--QQEAVKVLL 175 (458)
Q Consensus 101 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~--~~~~~~~Ll 175 (458)
|+.+++++|+++|++++..+..|.||||+|+ ..|+.+++++|++.|++++..+..+ ||||+|+..+ +.+++++|+
T Consensus 84 ~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll 163 (480)
T PHA03100 84 DVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLI 163 (480)
T ss_pred chHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999999998776655 9999999999 999999999
Q ss_pred hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCC------CcHHHHHHhcCc--HHHHHHHHHcCCCC
Q 012683 176 EHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGG------ATPLHIAADIGS--TEIIKCLLKAGADP 246 (458)
Q Consensus 176 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g------~t~L~~A~~~~~--~~iv~~Ll~~g~~~ 246 (458)
++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..| .||||.|+..|+ .+++++|+++|+++
T Consensus 164 ~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di 243 (480)
T PHA03100 164 DKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI 243 (480)
T ss_pred HCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999977 556 899999999999 99999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCC
Q 012683 247 NVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKD 316 (458)
Q Consensus 247 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (458)
+.+|..|.||||+|+..|+.+++++|++.|+ +.+..+..+.+++.++. .....+.+..+++.++...
T Consensus 244 n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga-d~n~~d~~g~tpl~~A~--~~~~~~iv~~Ll~~g~~i~ 310 (480)
T PHA03100 244 NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA-NPNLVNKYGDTPLHIAI--LNNNKEIFKLLLNNGPSIK 310 (480)
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCcHHHHHH--HhCCHHHHHHHHhcCCCHH
Confidence 9999999999999999999999999999988 55555555666655544 4467888888988887543
No 8
>PHA03095 ankyrin-like protein; Provisional
Probab=100.00 E-value=9.5e-38 Score=308.78 Aligned_cols=255 Identities=24% Similarity=0.278 Sum_probs=234.3
Q ss_pred HHHHHHHHHHcC---ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcC-CHHHHHHHHHhCCCCCCCCCCC
Q 012683 14 RVQQFLNAACTG---NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG-KTDVCKYLLEELKLDVDTQDED 89 (458)
Q Consensus 14 ~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~ 89 (458)
+.++||.|+..| +.++++.|++. |++ .+..+..|.||||+|+..| +.+++++|++. |++++..+..
T Consensus 47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~----Gad-----in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~-ga~in~~~~~ 116 (471)
T PHA03095 47 GKTPLHLYLHYSSEKVKDIVRLLLEA----GAD-----VNAPERCGFTPLHLYLYNATTLDVIKLLIKA-GADVNAKDKV 116 (471)
T ss_pred CCCHHHHHHHhcCCChHHHHHHHHHC----CCC-----CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHc-CCCCCCCCCC
Confidence 467999999999 99999999986 444 3667789999999999999 59999999998 9999999999
Q ss_pred CCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHh
Q 012683 90 GETPLLHAA--RQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG--NIELLTYLLSKGAEVDSESDAG-TPLIWAAG 164 (458)
Q Consensus 90 g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~ 164 (458)
|.||||+|+ ..++.+++++|+++|++++..+..|.||||+|+..+ +.+++++|++.|++++..+..+ ||||+++.
T Consensus 117 g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~ 196 (471)
T PHA03095 117 GRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQ 196 (471)
T ss_pred CCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 999999999 556899999999999999999999999999998876 6899999999999987765544 99999987
Q ss_pred C--CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHH
Q 012683 165 H--GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL--TCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCL 239 (458)
Q Consensus 165 ~--~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~L 239 (458)
. +..++++.|++.|++++.++..|.||||+|+..|+. .+++.|++.|++++.. ..|.||||+|+..|+.++|++|
T Consensus 197 ~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~L 276 (471)
T PHA03095 197 SFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRL 276 (471)
T ss_pred HCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 5 788999999999999999999999999999999975 6889999999999988 6899999999999999999999
Q ss_pred HHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 240 LKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 240 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
+++|++++.+|..|+||||+|+..|+.+++++|++.++.
T Consensus 277 L~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~ 315 (471)
T PHA03095 277 IALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS 315 (471)
T ss_pred HHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999987653
No 9
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=100.00 E-value=1.9e-37 Score=307.91 Aligned_cols=283 Identities=22% Similarity=0.246 Sum_probs=186.1
Q ss_pred HcCChHHHHHHHHHhhhcC-CCchhhhhhhc-ccCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 012683 23 CTGNLDLLKKIAKQLDDQG-KGLSKTVADIK-DANKRGALHFAAR--EGKTDVCKYLLEELKLDVDTQDEDGETPLLHAA 98 (458)
Q Consensus 23 ~~g~~~~v~~ll~~~~~~~-~~~~~~~~~~~-~~~g~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~ 98 (458)
+.++.++|++|++. | +++ +.. +..|.||||.|+. +++.+++++|++. |++++..|..|.||||+|+
T Consensus 151 ~~v~leiVk~LLe~----G~ADI-----N~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~Aa 220 (764)
T PHA02716 151 RGIDLDLIKYMVDV----GIVNL-----NYVCKKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTYL 220 (764)
T ss_pred cCCCHHHHHHHHHC----CCCCc-----ccccCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence 35777777777765 3 222 333 5667777777653 3567777777776 7777777777777777777
Q ss_pred HcCC--HHHHHHHHHcCCCCCCCCCCCCcHHHHH-------------------------------------HHcCCHHHH
Q 012683 99 RQGH--TETAKYLFEHGANPTIPSNLGATALHHS-------------------------------------AGIGNIELL 139 (458)
Q Consensus 99 ~~g~--~~~v~~Ll~~~~~~~~~~~~g~t~L~~A-------------------------------------~~~~~~~~~ 139 (458)
..|+ .++|++|+++|++++.++..|.||||.| +..|+.+++
T Consensus 221 ~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiV 300 (764)
T PHA02716 221 ITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVV 300 (764)
T ss_pred HcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHH
Confidence 7774 4777777777777777777777777754 334667777
Q ss_pred HHHHhCCCCCCCCCCCC-cHHHHHHh--CCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH--------------cCCHH
Q 012683 140 TYLLSKGAEVDSESDAG-TPLIWAAG--HGQQEAVKVLLEHHANPNAETEDNITPLLSAVA--------------AGSLT 202 (458)
Q Consensus 140 ~~Ll~~~~~~~~~~~~~-t~l~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--------------~~~~~ 202 (458)
++|++.|++++..+..+ ||||+|+. .++.+++++|+++|++++.+|..|+||||+|+. .++.+
T Consensus 301 klLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~e 380 (764)
T PHA02716 301 YSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLD 380 (764)
T ss_pred HHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHH
Confidence 77777777777665544 77777653 346777777777777777777777777777654 25677
Q ss_pred HHHHHHHcCCCcccc-CCCCcHHHH----HHhcCcHHHHHHHHHcCC---------------------------------
Q 012683 203 CLDLLIQAGANANIV-AGGATPLHI----AADIGSTEIIKCLLKAGA--------------------------------- 244 (458)
Q Consensus 203 ~~~~Ll~~g~~~~~~-~~g~t~L~~----A~~~~~~~iv~~Ll~~g~--------------------------------- 244 (458)
++++|+++|++++.. ..|.||||. |...++.+++++|++.|+
T Consensus 381 VVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~ 460 (764)
T PHA02716 381 VIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIP 460 (764)
T ss_pred HHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcc
Confidence 777777777777766 567777773 222356677777666432
Q ss_pred ----------------------------CCCCCCCCCCcHHHHHHHcCCH-----HHHHhhcCCCCCCCCCCCcchhhHH
Q 012683 245 ----------------------------DPNVTDEDGQKPIQVAAARGNR-----EAVEILFPLTSEDPSIPKWTVDGIL 291 (458)
Q Consensus 245 ----------------------------~~~~~~~~g~t~l~~A~~~~~~-----~~v~~Ll~~~~~~~~~~~~~~~~~~ 291 (458)
+++..|..|+||||+|+..|+. +++++|++.|.. .+..+..+.+++
T Consensus 461 ~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD-IN~~d~~G~TPL 539 (764)
T PHA02716 461 TDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN-INIPTKNGVTPL 539 (764)
T ss_pred hhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC-CcccCCCCCCHH
Confidence 1233466777777777777765 344777777654 334455555555
Q ss_pred HHHHhhcc---chhHHhhhhhcCCCCCC
Q 012683 292 EYMQSESG---KQLEETRNLKENNAPKD 316 (458)
Q Consensus 292 ~~~~~~~~---~~~~~~~~l~~~~~~~~ 316 (458)
.++..... .+.+.+..+++.++..+
T Consensus 540 h~A~~~g~~~~~~~eIvk~LL~~ga~~~ 567 (764)
T PHA02716 540 MLTMRNNRLSGHQWYIVKNILDKRPNVD 567 (764)
T ss_pred HHHHHcCCccccHHHHHHHHHhcCCCcc
Confidence 55443321 13466777777665554
No 10
>PHA02876 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=319.33 Aligned_cols=257 Identities=26% Similarity=0.320 Sum_probs=211.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHH-----------------------------
Q 012683 14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAA----------------------------- 64 (458)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~----------------------------- 64 (458)
..++||.||..|+.++|+.|+++. +......|..|.||||+|+
T Consensus 41 ~~t~LH~A~~~g~~e~V~~ll~~~--------~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 112 (682)
T PHA02876 41 PFTAIHQALQLRQIDIVEEIIQQN--------PELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIIL 112 (682)
T ss_pred cchHHHHHHHHHhhhHHHHHHHhC--------cccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHH
Confidence 478999999999999999999983 3334556667788888555
Q ss_pred -----------------------------------------HcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683 65 -----------------------------------------REGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT 103 (458)
Q Consensus 65 -----------------------------------------~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~ 103 (458)
..|+.+++++|++. |++++.+|..|.||||+|+..|+.
T Consensus 113 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~-Gadvn~~d~~G~TpLh~Aa~~G~~ 191 (682)
T PHA02876 113 NKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG-GADVNAKDIYCITPIHYAAERGNA 191 (682)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCH
Confidence 55778899999987 999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-----------------------------CCCCCCC
Q 012683 104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-----------------------------EVDSESD 154 (458)
Q Consensus 104 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-----------------------------~~~~~~~ 154 (458)
++|++|+++|++++..+..|.||||+|+..++.+++++|++.+. +++..+.
T Consensus 192 ~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~ 271 (682)
T PHA02876 192 KMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDD 271 (682)
T ss_pred HHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence 99999999999999888889999999998888887776665443 3443333
Q ss_pred -CCcHHHHHHhCCCH-HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc
Q 012683 155 -AGTPLIWAAGHGQQ-EAVKVLLEHHANPNAETEDNITPLLSAVAAG-SLTCLDLLIQAGANANIV-AGGATPLHIAADI 230 (458)
Q Consensus 155 -~~t~l~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~ 230 (458)
+.||||+|+..++. +++++|++.|++++..+.+|.||||+|+..| +.++++.|+..|++++.. ..|.||||+|+..
T Consensus 272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~ 351 (682)
T PHA02876 272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL 351 (682)
T ss_pred CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence 34899999988886 5888888889988888888999999998888 588888888888888877 6688888888875
Q ss_pred -CcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683 231 -GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279 (458)
Q Consensus 231 -~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 279 (458)
++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++++...
T Consensus 352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~ 401 (682)
T PHA02876 352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401 (682)
T ss_pred CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 4678888888888888888888888888888888888888888877653
No 11
>PHA02946 ankyin-like protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=294.12 Aligned_cols=281 Identities=16% Similarity=0.170 Sum_probs=239.0
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 15 VQQFLNAA--CTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 15 ~~~l~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
...||.++ ..++.++|+.|++. |.+ .+.+|.+|.||||+|+..|+.+++++|+++ |++++.+|..|.|
T Consensus 38 ~~~Lh~~~~~~~~~~~iv~~Ll~~----Gad-----vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~d~~g~T 107 (446)
T PHA02946 38 YHILHAYCGIKGLDERFVEELLHR----GYS-----PNETDDDGNYPLHIASKINNNRIVAMLLTH-GADPNACDKQHKT 107 (446)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHC----cCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCC
Confidence 34566655 44577899999986 333 356788999999999999999999999997 9999999999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCC--
Q 012683 93 PLLHAARQG--HTETAKYLFEHGANPTI-PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG-- 166 (458)
Q Consensus 93 ~L~~A~~~g--~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~-- 166 (458)
|||+|+..+ ..+++++|+++|++++. .+..|.|||| |+..++.+++++|++.|++++..+..+ ||||+|+..+
T Consensus 108 pLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~ 186 (446)
T PHA02946 108 PLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNP 186 (446)
T ss_pred HHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCC
Confidence 999999876 48999999999999985 6889999997 666799999999999999998877666 9999988755
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCc-HHHHHHHHHc
Q 012683 167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAG--SLTCLDLLIQAGANANIV-AGGATPLHIAADIGS-TEIIKCLLKA 242 (458)
Q Consensus 167 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~-~~iv~~Ll~~ 242 (458)
+.+++++|+++|++++..|.+|.||||+|+..| +.+++++|++ |++++.. ..|.||||+|+..++ .+++++|+++
T Consensus 187 ~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~ 265 (446)
T PHA02946 187 KASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLST 265 (446)
T ss_pred CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhC
Confidence 468999999999999999999999999999986 7899999985 8999988 789999999999988 5899999999
Q ss_pred CCCCCCC---------------------CCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccch
Q 012683 243 GADPNVT---------------------DEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQ 301 (458)
Q Consensus 243 g~~~~~~---------------------~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (458)
|++++.+ +..|+||||+|+.+|+.++|++|++++ ....+ ++..+...+.
T Consensus 266 g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~--------~~~~t--~L~~A~~~~~ 335 (446)
T PHA02946 266 SNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND--------IICED--AMYYAVLSEY 335 (446)
T ss_pred CCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC--------Ccccc--HHHHHHHhCH
Confidence 8766321 235779999999999999999999864 25555 4445555677
Q ss_pred hHHhhhhhcCCCCCCC
Q 012683 302 LEETRNLKENNAPKDK 317 (458)
Q Consensus 302 ~~~~~~l~~~~~~~~~ 317 (458)
.+.+..++..++..+.
T Consensus 336 ~~~v~~Ll~~ga~~n~ 351 (446)
T PHA02946 336 ETMVDYLLFNHFSVDS 351 (446)
T ss_pred HHHHHHHHHCCCCCCC
Confidence 8888899988888764
No 12
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=100.00 E-value=1.3e-36 Score=302.00 Aligned_cols=246 Identities=19% Similarity=0.249 Sum_probs=203.3
Q ss_pred ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCC--HHHHHHHHHhCCCCCCCCCCCCCcHHHHH------
Q 012683 26 NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGK--TDVCKYLLEELKLDVDTQDEDGETPLLHA------ 97 (458)
Q Consensus 26 ~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~ll~~~~~~~~~~~~~g~t~L~~A------ 97 (458)
+.++++.|++. |+++ +..|..|.||||+|+..|+ .++|++|++. |++++.++..|+||||.|
T Consensus 191 ~~eIVklLLe~----GADV-----N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~-GADVN~kD~~G~TPLh~Ai~~a~n 260 (764)
T PHA02716 191 DIDILEWLCNN----GVNV-----NLQNNHLITPLHTYLITGNVCASVIKKIIEL-GGDMDMKCVNGMSPIMTYIINIDN 260 (764)
T ss_pred CHHHHHHHHHc----CCCC-----CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhhhc
Confidence 45777777765 4443 5678899999999999995 4899999987 999999999999999965
Q ss_pred -------------------------------HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHh
Q 012683 98 -------------------------------ARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG--IGNIELLTYLLS 144 (458)
Q Consensus 98 -------------------------------~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~ 144 (458)
+..|+.+++++|+++|++++.+|..|+||||+|+. .++.+++++|++
T Consensus 261 ~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe 340 (764)
T PHA02716 261 INPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHE 340 (764)
T ss_pred cCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHH
Confidence 34578889999999999999999999999998764 467899999999
Q ss_pred CCCCCCCCCCCC-cHHHHHHh--------------CCCHHHHHHHHhcCCCCCCCCCCCCcHHHH----HHHcCCHHHHH
Q 012683 145 KGAEVDSESDAG-TPLIWAAG--------------HGQQEAVKVLLEHHANPNAETEDNITPLLS----AVAAGSLTCLD 205 (458)
Q Consensus 145 ~~~~~~~~~~~~-t~l~~A~~--------------~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~----a~~~~~~~~~~ 205 (458)
.|++++..+..+ ||||+|+. .++.+++++|+++|++++..+..|.||||. |...++.++++
T Consensus 341 ~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvk 420 (764)
T PHA02716 341 YGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIID 420 (764)
T ss_pred cCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHH
Confidence 999998777655 99998865 368899999999999999999999999994 23356789999
Q ss_pred HHHHcCCCc-------------------------------------------------------------ccc-CCCCcH
Q 012683 206 LLIQAGANA-------------------------------------------------------------NIV-AGGATP 223 (458)
Q Consensus 206 ~Ll~~g~~~-------------------------------------------------------------~~~-~~g~t~ 223 (458)
+|++.|+.. +.. ..|.||
T Consensus 421 lLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TP 500 (764)
T PHA02716 421 CLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTP 500 (764)
T ss_pred HHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCH
Confidence 998865311 111 358999
Q ss_pred HHHHHhcCcH-----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH-----HHHHhhcCCCCCCCC
Q 012683 224 LHIAADIGST-----EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR-----EAVEILFPLTSEDPS 281 (458)
Q Consensus 224 L~~A~~~~~~-----~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-----~~v~~Ll~~~~~~~~ 281 (458)
||+|+..|+. +++++|++.|++++.+|..|+||||+|+.+|+. ++|+.|++.++....
T Consensus 501 Lh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~ 568 (764)
T PHA02716 501 LHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDI 568 (764)
T ss_pred HHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcch
Confidence 9999999876 455999999999999999999999999999976 999999987765433
No 13
>PHA02878 ankyrin repeat protein; Provisional
Probab=100.00 E-value=8.2e-37 Score=300.98 Aligned_cols=244 Identities=27% Similarity=0.305 Sum_probs=140.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 012683 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95 (458)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~ 95 (458)
++||.||..|+.++|+.|++. |+++ +..|.+|.||||+||..|+.++++.|+.. +...+. ..+.+|++
T Consensus 39 tPLh~A~~~g~~e~vk~Ll~~----gadv-----n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-~~~~~~--~~~~~~l~ 106 (477)
T PHA02878 39 IPLHQAVEARNLDVVKSLLTR----GHNV-----NQPDHRDLTPLHIICKEPNKLGMKEMIRS-INKCSV--FYTLVAIK 106 (477)
T ss_pred chHHHHHHcCCHHHHHHHHHC----CCCC-----CCCCCCCCCHHHHHHHCccHhHHHHHHHH-Hhcccc--ccchhhHH
Confidence 467777777777777777764 2222 44566677777777777777777777765 322222 34566677
Q ss_pred HHHHcCCHH---------------------------------HHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHH
Q 012683 96 HAARQGHTE---------------------------------TAKYLFEHGANPTIPSNL-GATALHHSAGIGNIELLTY 141 (458)
Q Consensus 96 ~A~~~g~~~---------------------------------~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~ 141 (458)
.|+..|+.+ ++++|+++|++++..+.. |.||||+|+..|+.+++++
T Consensus 107 ~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~ 186 (477)
T PHA02878 107 DAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTEL 186 (477)
T ss_pred HHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHH
Confidence 666665544 334444445555555555 5666666666666666666
Q ss_pred HHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCccccC-
Q 012683 142 LLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA-GSLTCLDLLIQAGANANIVA- 218 (458)
Q Consensus 142 Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~- 218 (458)
|++.|++++..+..+ ||||.|+..++.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++...
T Consensus 187 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~ 266 (477)
T PHA02878 187 LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY 266 (477)
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence 666665555444333 566666666666666666666666655555566666665543 45566666666666555542
Q ss_pred -CCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHhhc
Q 012683 219 -GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG-NREAVEILF 273 (458)
Q Consensus 219 -~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll 273 (458)
.|.||||+| .++.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+
T Consensus 267 ~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li 321 (477)
T PHA02878 267 ILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI 321 (477)
T ss_pred CCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHH
Confidence 355666665 34555566666666666666666666666655432 344444444
No 14
>PHA02875 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=294.40 Aligned_cols=237 Identities=21% Similarity=0.345 Sum_probs=181.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 012683 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95 (458)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~ 95 (458)
.+|+.|+..|+.+++++|++. |.+ .+..+.+|.||||+|+..|+.+++++|++. |++++..+..+.||||
T Consensus 4 ~~L~~A~~~g~~~iv~~Ll~~----g~~-----~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~t~L~ 73 (413)
T PHA02875 4 VALCDAILFGELDIARRLLDI----GIN-----PNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVKYPDIESELH 73 (413)
T ss_pred hHHHHHHHhCCHHHHHHHHHC----CCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCcccHHH
Confidence 357888888888888888865 322 234556788888888888888888888876 7777777777888888
Q ss_pred HHHHcCCHHHHHHHHHcCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHH
Q 012683 96 HAARQGHTETAKYLFEHGANPT-IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV 173 (458)
Q Consensus 96 ~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~ 173 (458)
.|+..|+.+++++|++.|.... ..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++
T Consensus 74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 8888888888888888776553 345667888888888888888888888888877665544 88888888888888888
Q ss_pred HHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CC-CCcHHHHHHhcCcHHHHHHHHHcCCCCCCC--
Q 012683 174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AG-GATPLHIAADIGSTEIIKCLLKAGADPNVT-- 249 (458)
Q Consensus 174 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~-g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~-- 249 (458)
|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. .. +.||+|+|+..|+.+++++|+++|++++..
T Consensus 154 Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~ 233 (413)
T PHA02875 154 LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFM 233 (413)
T ss_pred HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhh
Confidence 88888888888888888888888888888888888888888766 33 357788888888888888888888887654
Q ss_pred -CCCCCcHHHHHHH
Q 012683 250 -DEDGQKPIQVAAA 262 (458)
Q Consensus 250 -~~~g~t~l~~A~~ 262 (458)
+..|.||+++++.
T Consensus 234 ~~~~~~t~l~~~~~ 247 (413)
T PHA02875 234 IEGEECTILDMICN 247 (413)
T ss_pred cCCCchHHHHHHHh
Confidence 5567788877653
No 15
>PHA02875 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=294.74 Aligned_cols=225 Identities=27% Similarity=0.356 Sum_probs=211.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135 (458)
Q Consensus 56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 135 (458)
.+++||.|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 57899999999999999999997 99999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHhCCCCCCCC--CCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 012683 136 IELLTYLLSKGAEVDSE--SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213 (458)
Q Consensus 136 ~~~~~~Ll~~~~~~~~~--~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 213 (458)
.+++++|++.|...... ..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~ 160 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 99999999999876432 2345999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCCHHHHHhhcCCCCCCCC
Q 012683 214 ANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ-KPIQVAAARGNREAVEILFPLTSEDPS 281 (458)
Q Consensus 214 ~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~Ll~~~~~~~~ 281 (458)
++.. ..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|+.+++++|+++|.+...
T Consensus 161 ~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence 9987 6799999999999999999999999999999998875 789999999999999999999887543
No 16
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=273.33 Aligned_cols=209 Identities=18% Similarity=0.212 Sum_probs=190.9
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 012683 66 EGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK 145 (458)
Q Consensus 66 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 145 (458)
.++.+++++|+++ ++ +..|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|++.
T Consensus 9 ~~~~~~~~~Lis~-~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~ 83 (284)
T PHA02791 9 WKSKQLKSFLSSK-DA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS 83 (284)
T ss_pred cCHHHHHHHHHhC-CC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHC
Confidence 3668899999996 65 4678899999999999999999999999999988764 78999999999999999999999
Q ss_pred CCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcH
Q 012683 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNI-TPLLSAVAAGSLTCLDLLIQAGANANIVAGGATP 223 (458)
Q Consensus 146 ~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~ 223 (458)
|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|+ ||||+|+..|+.+++++|++++++......|.||
T Consensus 84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~Tp 163 (284)
T PHA02791 84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC 163 (284)
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccH
Confidence 99998777655 999999999999999999999999999888885 8999999999999999999998654322358999
Q ss_pred HHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcH-HHHHHHcCCHHHHHhhcCCCCCC
Q 012683 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP-IQVAAARGNREAVEILFPLTSED 279 (458)
Q Consensus 224 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~ 279 (458)
||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+.+|+.++|++|+++|...
T Consensus 164 Lh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i 220 (284)
T PHA02791 164 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI 220 (284)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 999999999999999999999999999999987 99999999999999999998764
No 17
>PHA02876 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=305.35 Aligned_cols=253 Identities=26% Similarity=0.310 Sum_probs=152.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcH
Q 012683 14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETP 93 (458)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~ 93 (458)
..+.++.|+..|+.++++.|++. |+++ +..|..|.||||+|+..|+.++|++|++. |++++..+..|.||
T Consensus 145 ~~~~l~~~i~~~~~~i~k~Ll~~----Gadv-----n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~~~~g~t~ 214 (682)
T PHA02876 145 YMKLIKERIQQDELLIAEMLLEG----GADV-----NAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLSV 214 (682)
T ss_pred hhHHHHHHHHCCcHHHHHHHHhC----CCCC-----CCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCccCCCCCCH
Confidence 34567777788888888888765 3332 45677788888888888888888888876 77777666666666
Q ss_pred HHHHHHcCCHHHHHHHHH-----------------------------cCCCCCCCCCCCCcHHHHHHHcCCH-HHHHHHH
Q 012683 94 LLHAARQGHTETAKYLFE-----------------------------HGANPTIPSNLGATALHHSAGIGNI-ELLTYLL 143 (458)
Q Consensus 94 L~~A~~~g~~~~v~~Ll~-----------------------------~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll 143 (458)
||.|+..|+.+++++|++ .|++++..+..|.||||+|+..++. +++++|+
T Consensus 215 L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl 294 (682)
T PHA02876 215 LECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLL 294 (682)
T ss_pred HHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHH
Confidence 666666666555544433 3334444555566666666666654 3566666
Q ss_pred hCCCCCCCCCCCC-cHHHHHHhCC-CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCcccc-CC
Q 012683 144 SKGAEVDSESDAG-TPLIWAAGHG-QQEAVKVLLEHHANPNAETEDNITPLLSAVAA-GSLTCLDLLIQAGANANIV-AG 219 (458)
Q Consensus 144 ~~~~~~~~~~~~~-t~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~-~~ 219 (458)
+.|++++..+..+ ||||+|+..| ..+++++|+..|++++..+..|.||||+|+.. ++.++++.|++.|++++.. ..
T Consensus 295 ~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~ 374 (682)
T PHA02876 295 ERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYC 374 (682)
T ss_pred HCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCC
Confidence 6666665544433 6666666655 35555555555555555555555555555553 3455555555555555554 44
Q ss_pred CCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-HHHHHhhcCCC
Q 012683 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN-REAVEILFPLT 276 (458)
Q Consensus 220 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~ 276 (458)
|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|++.+
T Consensus 375 G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g 432 (682)
T PHA02876 375 DKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG 432 (682)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC
Confidence 5555555555555555555555555555555555555555544333 33455555444
No 18
>PHA02878 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=292.91 Aligned_cols=269 Identities=22% Similarity=0.252 Sum_probs=217.8
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 012683 17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH 96 (458)
Q Consensus 17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~ 96 (458)
+|+.++...+.+.+...++.+...+ ...+..+..+.||||+|+..|+.++|++|+++ |++++..+..|.||||+
T Consensus 3 ~~~~~~~~~~~~~i~~~i~~~~~~~-----~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~-gadvn~~d~~g~TpLh~ 76 (477)
T PHA02878 3 KLYKSMYTDNYETILKYIEYIDHTE-----NYSTSASLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQPDHRDLTPLHI 76 (477)
T ss_pred hHHHHHHhccHHHHHHHHHHHhhhh-----hhcCcccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHH
Confidence 5788888888776777776643321 12233456789999999999999999999998 99999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH---------------------------------HHHHHH
Q 012683 97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE---------------------------------LLTYLL 143 (458)
Q Consensus 97 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~---------------------------------~~~~Ll 143 (458)
||..|+.++++.|++.+..... ..+.++++.|+..++.+ ++++|+
T Consensus 77 A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll 154 (477)
T PHA02878 77 ICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLL 154 (477)
T ss_pred HHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHH
Confidence 9999999999999998766554 46788999998887655 555666
Q ss_pred hCCCCCCCCCCC--CcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCC
Q 012683 144 SKGAEVDSESDA--GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGG 220 (458)
Q Consensus 144 ~~~~~~~~~~~~--~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g 220 (458)
+.|++++..+.. .||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++.|++++.. ..|
T Consensus 155 ~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g 234 (477)
T PHA02878 155 SYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCG 234 (477)
T ss_pred HcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC
Confidence 667777665544 48999999999999999999999998888888999999999999999999999999988877 678
Q ss_pred CcHHHHHHhc-CcHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHh
Q 012683 221 ATPLHIAADI-GSTEIIKCLLKAGADPNVTDE-DGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQS 296 (458)
Q Consensus 221 ~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 296 (458)
.||||+|+.. ++.+++++|+++|++++.++. .|.||||+| .++.+++++|+++|.+. +..+..+.+++.++..
T Consensus 235 ~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi-n~~d~~g~TpL~~A~~ 309 (477)
T PHA02878 235 NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADI-NSLNSYKLTPLSSAVK 309 (477)
T ss_pred CCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence 8999998875 688999999999999888876 789999998 57788899999887643 4455566666666543
No 19
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=289.80 Aligned_cols=262 Identities=31% Similarity=0.399 Sum_probs=219.5
Q ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC
Q 012683 8 ALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD 87 (458)
Q Consensus 8 ~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~ 87 (458)
.+.-..+..++|.|+..|+...++.|++.. ...+..|.+|.||||.||..++.+..+.|++. |+++...|
T Consensus 115 ~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~---------~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~-~a~~~K~~ 184 (929)
T KOG0510|consen 115 PLRNLNKNAPLHLAADSGNYSCLKLLLDYG---------ADVNLEDENGFTPLHLAARKNKVEAKKELINK-GADPCKSD 184 (929)
T ss_pred ChhhhhccCchhhccccchHHHHHHHHHhc---------CCccccccCCCchhhHHHhcChHHHHHHHHhc-CCCCCccc
Confidence 344456677888888888888888888762 22467788889999999999999977777776 88888888
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHH-----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC-----------
Q 012683 88 EDGETPLLHAARQGHTETAKYLFE-----HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS----------- 151 (458)
Q Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~----------- 151 (458)
.+|.+|+|.|+..|..++.+.++. ++..++..+..+.||||.|+..|++++++.+++.|.....
T Consensus 185 ~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~ke 264 (929)
T KOG0510|consen 185 IDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKE 264 (929)
T ss_pred CcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHH
Confidence 899999999999999999998887 6677888888899999999999999999999988765431
Q ss_pred -----CCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccc--CCCCcH
Q 012683 152 -----ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ-AGANANIV--AGGATP 223 (458)
Q Consensus 152 -----~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~--~~g~t~ 223 (458)
++.+.||||+|++.|++++++.|+..|++++.++.++.||||.|+..|++.+++.|++ .|..+-.. ..|.||
T Consensus 265 lv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tp 344 (929)
T KOG0510|consen 265 LVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTP 344 (929)
T ss_pred HhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCc
Confidence 2234499999999999999999999999999999999999999999999999999998 44322222 458999
Q ss_pred HHHHHhcCcHHHHHHHHHcCCCCC---CCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683 224 LHIAADIGSTEIIKCLLKAGADPN---VTDEDGQKPIQVAAARGNREAVEILFPLTSED 279 (458)
Q Consensus 224 L~~A~~~~~~~iv~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 279 (458)
||+|+..||..++++|++.|+... ..|.+|.||||.|+.+|+..+|++|+.+|.+.
T Consensus 345 LHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 345 LHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI 403 (929)
T ss_pred hhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence 999999999999999999998876 56999999999999999999999999998876
No 20
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=287.57 Aligned_cols=295 Identities=26% Similarity=0.345 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
.+..+||.|+...-.+.++.|++. |++ ....+.++.+|+|+|+..|.+++++.|++. +++++..+..|.|
T Consensus 87 ~~n~~l~~a~~~~~~~~i~~Lls~----gad-----~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~-~~dvnl~de~~~T 156 (929)
T KOG0510|consen 87 ADNTPLHAAVEYNQGDKIQVLLSY----GAD-----TPLRNLNKNAPLHLAADSGNYSCLKLLLDY-GADVNLEDENGFT 156 (929)
T ss_pred ccCchhHHHhhcchHHHHHHHHhc----CCC-----CChhhhhccCchhhccccchHHHHHHHHHh-cCCccccccCCCc
Confidence 345779999999999999999986 443 356778899999999999999999999998 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-----CCCCCCCCCCCC-cHHHHHHhCC
Q 012683 93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS-----KGAEVDSESDAG-TPLIWAAGHG 166 (458)
Q Consensus 93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-----~~~~~~~~~~~~-t~l~~A~~~~ 166 (458)
|||+||..++.+..+.|++.|+++...|.+|.+|+|.|+++|..++.+.++. ++..++..+.++ +|||.|+..|
T Consensus 157 pLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g 236 (929)
T KOG0510|consen 157 PLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGG 236 (929)
T ss_pred hhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcC
Confidence 9999999999998899999999999999999999999999999999999998 566677666655 9999999999
Q ss_pred CHHHHHHHHhcCCC---------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc
Q 012683 167 QQEAVKVLLEHHAN---------------PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI 230 (458)
Q Consensus 167 ~~~~~~~Ll~~~~~---------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~ 230 (458)
++++++.+++.|.. ++..|.+|.||||+|++.|++++++.|+..|++++.. .++.||||.|+..
T Consensus 237 ~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~y 316 (929)
T KOG0510|consen 237 DIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIY 316 (929)
T ss_pred CHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHc
Confidence 99999999998754 3557889999999999999999999999999999988 7899999999999
Q ss_pred CcHHHHHHHHH-cCC-CCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhh
Q 012683 231 GSTEIIKCLLK-AGA-DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNL 308 (458)
Q Consensus 231 ~~~~iv~~Ll~-~g~-~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (458)
|+++.|+-||+ .|. ..+..|-.|.||||+|+..||..++++|+..|+....-...+.+|.+.+.-+........++.+
T Consensus 317 g~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~L 396 (929)
T KOG0510|consen 317 GRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKL 396 (929)
T ss_pred ccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHH
Confidence 99999999998 443 4688899999999999999999999999999987664333466777777777777888889999
Q ss_pred hcCCCCCCC
Q 012683 309 KENNAPKDK 317 (458)
Q Consensus 309 ~~~~~~~~~ 317 (458)
+..|+..+.
T Consensus 397 i~~Ga~I~~ 405 (929)
T KOG0510|consen 397 ISHGADIGV 405 (929)
T ss_pred HHcCCceee
Confidence 999888743
No 21
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-37 Score=239.81 Aligned_cols=206 Identities=32% Similarity=0.460 Sum_probs=172.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHc
Q 012683 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDE-DGETPLLHAARQGHTETAKYLF-EHGANPTIPSNLGATALHHSAGI 133 (458)
Q Consensus 56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~ 133 (458)
+.++.+.+|...-..-|+.+++..+..++.++. +|.||||+||..|+.+|+++|+ +.+..++.+|..|+||||+|+..
T Consensus 3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~ 82 (226)
T KOG4412|consen 3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN 82 (226)
T ss_pred ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence 456777777777777777777764545666544 8888888888888888888888 45677778888888888888888
Q ss_pred CCHHHHHHHHhC-CCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012683 134 GNIELLTYLLSK-GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG 211 (458)
Q Consensus 134 ~~~~~~~~Ll~~-~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 211 (458)
|+.++|+.|+.+ |++++...+++ |+||+|+..|..+|+++|+++|+.++..|..|.||||-|+..|+++++++|+..|
T Consensus 83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~ 162 (226)
T KOG4412|consen 83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG 162 (226)
T ss_pred CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence 888888888887 88888777766 8899999899999999999999888888999999999999999999999999999
Q ss_pred CCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683 212 ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262 (458)
Q Consensus 212 ~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~ 262 (458)
+.+|.. +.|+||||.|.--|+.++..+|+++|++++..|+.| ||+..|+-
T Consensus 163 a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~ 213 (226)
T KOG4412|consen 163 APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN 213 (226)
T ss_pred CCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence 888887 779999999977789999999999999999999988 99887763
No 22
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=237.58 Aligned_cols=207 Identities=30% Similarity=0.406 Sum_probs=184.6
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 012683 17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH 96 (458)
Q Consensus 17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~ 96 (458)
..+.++...-..-++++++..+ ..+....|.+|+||||+||+.|+.+++.+|++..+..+|.+|..||||||+
T Consensus 6 ~~~~~~~~~~~~kveel~~s~~-------kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhi 78 (226)
T KOG4412|consen 6 LGKAICENCEEFKVEELIQSDP-------KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHI 78 (226)
T ss_pred hHHHHHhhchHHHHHHHHhcCh-------hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhh
Confidence 3555666666677777776521 234445566999999999999999999999987788999999999999999
Q ss_pred HHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHH
Q 012683 97 AARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174 (458)
Q Consensus 97 A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~L 174 (458)
|+..|+.++|+.|+.+ |++++..+..|.||||+|+..|.++++.+|++.|+.++..+..+ ||||.|+.-|.++++++|
T Consensus 79 a~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~L 158 (226)
T KOG4412|consen 79 AASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYL 158 (226)
T ss_pred hhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHH
Confidence 9999999999999998 99999999999999999999999999999999999999888777 999999999999999999
Q ss_pred HhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhc
Q 012683 175 LEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADI 230 (458)
Q Consensus 175 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~ 230 (458)
+..|+.+|.+|..|+||||.|...|+.++...|+++|+++...++..|++-.|+-.
T Consensus 159 i~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~t~~~~a~~~ 214 (226)
T KOG4412|consen 159 ISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEGTALRIACNE 214 (226)
T ss_pred HhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999884444998877643
No 23
>PHA02989 ankyrin repeat protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=289.89 Aligned_cols=249 Identities=20% Similarity=0.273 Sum_probs=150.8
Q ss_pred HHHHHHHHcC--ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcC------CHHHHHHHHHhCCCCCCCCC
Q 012683 16 QQFLNAACTG--NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG------KTDVCKYLLEELKLDVDTQD 87 (458)
Q Consensus 16 ~~l~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g------~~~~v~~ll~~~~~~~~~~~ 87 (458)
++|+.++..+ +.++|+.|++. |+++. ..+ .+.||||.|+..+ +.+++++|++. |++++.++
T Consensus 37 t~l~~~~~~~~~~~~iv~~Ll~~----GAdvn-----~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d 105 (494)
T PHA02989 37 SILLLYLKRKDVKIKIVKLLIDN----GADVN-----YKG-YIETPLCAVLRNREITSNKIKKIVKLLLKF-GADINLKT 105 (494)
T ss_pred CHHHHHHhcCCCChHHHHHHHHc----CCCcc-----CCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHC-CCCCCCCC
Confidence 4444443332 45666666654 33331 122 3456666665433 34566666665 66666666
Q ss_pred CCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCC-CC-CCCcHH
Q 012683 88 EDGETPLLHAARQ---GHTETAKYLFEHGANP-TIPSNLGATALHHSAGI--GNIELLTYLLSKGAEVDS-ES-DAGTPL 159 (458)
Q Consensus 88 ~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~-~~-~~~t~l 159 (458)
..|.||||.|+.. |+.+++++|+++|+++ +..+..|.||||+|+.. ++.+++++|++.|++++. .+ .+.|||
T Consensus 106 ~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL 185 (494)
T PHA02989 106 FNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPM 185 (494)
T ss_pred CCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChH
Confidence 6666666665543 4566666666666666 56666666666665543 456666666666666554 22 223666
Q ss_pred HHHHhCC----CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC------CHHHHHHHHHcCCCcccc-CCCCcHHHHHH
Q 012683 160 IWAAGHG----QQEAVKVLLEHHANPNAETEDNITPLLSAVAAG------SLTCLDLLIQAGANANIV-AGGATPLHIAA 228 (458)
Q Consensus 160 ~~A~~~~----~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~------~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~ 228 (458)
|.|+..+ +.+++++|+++|++++..+..+.|++|.++..+ ..+++++|+. |++++.. ..|.||||+|+
T Consensus 186 ~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa 264 (494)
T PHA02989 186 NIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISA 264 (494)
T ss_pred HHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHH
Confidence 6655443 566666666666666666666666666544332 3445554433 4666655 55777777777
Q ss_pred hcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 229 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.+
T Consensus 265 ~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~ 312 (494)
T PHA02989 265 KVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLK 312 (494)
T ss_pred HhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 777777777777777777777777777777777777777777777654
No 24
>PHA02798 ankyrin-like protein; Provisional
Probab=100.00 E-value=4.8e-35 Score=288.87 Aligned_cols=254 Identities=20% Similarity=0.267 Sum_probs=220.1
Q ss_pred HHHHHHHH--cCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHc-----CCHHHHHHHHHhCCCCCCCCCC
Q 012683 16 QQFLNAAC--TGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE-----GKTDVCKYLLEELKLDVDTQDE 88 (458)
Q Consensus 16 ~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~ll~~~~~~~~~~~~ 88 (458)
+.++.+.. .++.++|+.|++. |+++ +..+..|.||||.|+.. ++.+++++|++. |++++..|.
T Consensus 38 ~~~~~yl~~~~~~~~iv~~Ll~~----Gadv-----n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-GadiN~~d~ 107 (489)
T PHA02798 38 SIFQKYLQRDSPSTDIVKLFINL----GANV-----NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN-GADINKKNS 107 (489)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHC----CCCC-----CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-CCCCCCCCC
Confidence 33443443 4578999999987 4443 56788999999998864 678999999997 999999999
Q ss_pred CCCcHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCCCC--CCcHHH
Q 012683 89 DGETPLLHAARQG---HTETAKYLFEHGANPTIPSNLGATALHHSAGIGN---IELLTYLLSKGAEVDSESD--AGTPLI 160 (458)
Q Consensus 89 ~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~~--~~t~l~ 160 (458)
.|.||||+|+.++ +.+++++|+++|++++..|..|.||||+|+..++ .+++++|++.|++++..+. +.||||
T Consensus 108 ~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh 187 (489)
T PHA02798 108 DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH 187 (489)
T ss_pred CcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHH
Confidence 9999999999986 7899999999999999999999999999999988 9999999999999987643 349999
Q ss_pred HHHhC----CCHHHHHHHHhcCCCCCCCCCCCCcHHH-------HHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHH
Q 012683 161 WAAGH----GQQEAVKVLLEHHANPNAETEDNITPLL-------SAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAA 228 (458)
Q Consensus 161 ~A~~~----~~~~~~~~Ll~~~~~~~~~~~~~~t~l~-------~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~ 228 (458)
.++.. ++.+++++|+++|++++..+..+.++++ .+...++.+++.+|+. |++++.. ..|.||||+|+
T Consensus 188 ~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~ 266 (489)
T PHA02798 188 CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSV 266 (489)
T ss_pred HHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHH
Confidence 88764 4899999999999999998888888876 2345567788888765 6899987 67999999999
Q ss_pred hcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCC
Q 012683 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280 (458)
Q Consensus 229 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~ 280 (458)
..|+.+++++|+++|++++.+|..|+||||+|+.+++.++++.|+++++...
T Consensus 267 ~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 267 SHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred HcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence 9999999999999999999999999999999999999999999998876543
No 25
>PHA02989 ankyrin repeat protein; Provisional
Probab=100.00 E-value=6.6e-34 Score=281.15 Aligned_cols=280 Identities=21% Similarity=0.262 Sum_probs=230.5
Q ss_pred HHHHHH---cCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHc--CCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 18 FLNAAC---TGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE--GKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 18 l~~A~~---~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
||.-+. ..+.++|+.|++. |+++ +.. ..|.||||.++.. ++.++|++|++. |++++.++ .+.|
T Consensus 4 l~~y~~~~~~~~~~~v~~LL~~----Gadv-----N~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn~~~-~~~t 71 (494)
T PHA02989 4 LYEYILYSDTVDKNALEFLLRT----GFDV-----NEE-YRGNSILLLYLKRKDVKIKIVKLLIDN-GADVNYKG-YIET 71 (494)
T ss_pred HHHHHHcCCcCcHHHHHHHHHc----CCCc-----ccc-cCCCCHHHHHHhcCCCChHHHHHHHHc-CCCccCCC-CCCC
Confidence 444444 5789999999987 4443 333 4688998876654 378999999998 99999886 5799
Q ss_pred HHHHHHHcC------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC-CCCCCCC-cHHHH
Q 012683 93 PLLHAARQG------HTETAKYLFEHGANPTIPSNLGATALHHSAGI---GNIELLTYLLSKGAEV-DSESDAG-TPLIW 161 (458)
Q Consensus 93 ~L~~A~~~g------~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~-~~~~~~~-t~l~~ 161 (458)
|||.|+.++ +.+++++|+++|++++.++..|.||||.|+.. ++.+++++|+++|+++ +..+..+ ||||+
T Consensus 72 pL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~ 151 (494)
T PHA02989 72 PLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHM 151 (494)
T ss_pred cHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHH
Confidence 999998754 57899999999999999999999999988765 6899999999999999 6665544 99999
Q ss_pred HHhC--CCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc---
Q 012683 162 AAGH--GQQEAVKVLLEHHANPNA-ETEDNITPLLSAVAAG----SLTCLDLLIQAGANANIV-AGGATPLHIAADI--- 230 (458)
Q Consensus 162 A~~~--~~~~~~~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~--- 230 (458)
|+.. ++.+++++|+++|++++. .+..|.||||.|+..+ +.+++++|+++|++++.. ..+.|+||.++..
T Consensus 152 a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~ 231 (494)
T PHA02989 152 YLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKI 231 (494)
T ss_pred HHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchh
Confidence 8764 689999999999999988 6889999999987764 899999999999999987 5689999987764
Q ss_pred ---CcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhh
Q 012683 231 ---GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRN 307 (458)
Q Consensus 231 ---~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (458)
+..+++++|+. |++++.+|..|+||||+|+..|+.+++++|++.|++ .+..+..+.+++.++. .....+.+..
T Consensus 232 ~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~--~~~~~~iv~~ 307 (494)
T PHA02989 232 LSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAI--KHGNIDMLNR 307 (494)
T ss_pred hcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHH--HcCCHHHHHH
Confidence 45788887765 699999999999999999999999999999999874 3444555566665554 4456777788
Q ss_pred hhcCCC
Q 012683 308 LKENNA 313 (458)
Q Consensus 308 l~~~~~ 313 (458)
+++.+.
T Consensus 308 LL~~~p 313 (494)
T PHA02989 308 ILQLKP 313 (494)
T ss_pred HHhcCC
Confidence 887653
No 26
>PHA02917 ankyrin-like protein; Provisional
Probab=100.00 E-value=5.8e-32 Score=270.86 Aligned_cols=290 Identities=17% Similarity=0.173 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHc---CChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCC---------------------
Q 012683 13 ERVQQFLNAACT---GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGK--------------------- 68 (458)
Q Consensus 13 ~~~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~--------------------- 68 (458)
.+.++||.|+.. |+.++|+.|++. |+++ +..+..|.||||+|+..|+
T Consensus 31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~----ga~v-----~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~ 101 (661)
T PHA02917 31 FKNNALHAYLFNEHCNNVEVVKLLLDS----GTNP-----LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN 101 (661)
T ss_pred CCCcHHHHHHHhhhcCcHHHHHHHHHC----CCCc-----cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC
Confidence 346889997655 889999999976 4333 3556677777777776554
Q ss_pred --------------HHHHHHHHHhCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCC---CC------
Q 012683 69 --------------TDVCKYLLEELKLDVDTQDEDGETPLLHAA--RQGHTETAKYLFEHGANPTIPSN---LG------ 123 (458)
Q Consensus 69 --------------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~---~g------ 123 (458)
.++|++|+++ |++++.+|..|.||||.|+ ..|+.+++++|+++|++++..+. .|
T Consensus 102 ~~~~~~~~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~ 180 (661)
T PHA02917 102 DFNIFSYMKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDY 180 (661)
T ss_pred CcchHHHHHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccc
Confidence 4555555555 6666666666667766433 35666777777776666654332 22
Q ss_pred -----CcHHHHHHH-----------cCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCH--HHHHHHHhcCCCCC--
Q 012683 124 -----ATALHHSAG-----------IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ--EAVKVLLEHHANPN-- 182 (458)
Q Consensus 124 -----~t~L~~A~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~--~~~~~Ll~~~~~~~-- 182 (458)
.||||+|+. .++.+++++|++.|++++..+..+ ||||+|+.+|+. +++++|++ |++.+
T Consensus 181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~ 259 (661)
T PHA02917 181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAY 259 (661)
T ss_pred cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccc
Confidence 366766654 345666777777666666654444 667776666653 56666653 44332
Q ss_pred --CCCCCCCcHHHHHH----------------------------------------------------------------
Q 012683 183 --AETEDNITPLLSAV---------------------------------------------------------------- 196 (458)
Q Consensus 183 --~~~~~~~t~l~~a~---------------------------------------------------------------- 196 (458)
..+..+.+++++|+
T Consensus 260 ~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 339 (661)
T PHA02917 260 SYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYM 339 (661)
T ss_pred ccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHH
Confidence 11122222222222
Q ss_pred HcCC--HHHHHHHHHcCCCcccc-------------------------------CCCCcHHHHHHhcC------------
Q 012683 197 AAGS--LTCLDLLIQAGANANIV-------------------------------AGGATPLHIAADIG------------ 231 (458)
Q Consensus 197 ~~~~--~~~~~~Ll~~g~~~~~~-------------------------------~~g~t~L~~A~~~~------------ 231 (458)
..|. .++++.|++.|++++.. ++|.||||.|++.+
T Consensus 340 ~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~ 419 (661)
T PHA02917 340 TFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYK 419 (661)
T ss_pred HcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhh
Confidence 1222 23555555555554322 12677777766432
Q ss_pred -----------cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccc
Q 012683 232 -----------STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300 (458)
Q Consensus 232 -----------~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (458)
..+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|.+. +..+..+.+++.++... ..
T Consensus 420 ~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdi-n~~d~~G~T~L~~A~~~-~~ 497 (661)
T PHA02917 420 KGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDV-NIRSNNGYTCIAIAINE-SR 497 (661)
T ss_pred hccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHh-CC
Confidence 245667777777777777777777777777777777777777766543 23333344444443321 23
Q ss_pred hhHHhhhhhcCCCCC
Q 012683 301 QLEETRNLKENNAPK 315 (458)
Q Consensus 301 ~~~~~~~l~~~~~~~ 315 (458)
..+.+..++..++..
T Consensus 498 ~~~iv~~LL~~ga~i 512 (661)
T PHA02917 498 NIELLKMLLCHKPTL 512 (661)
T ss_pred CHHHHHHHHHcCCCh
Confidence 345555566555444
No 27
>PHA02798 ankyrin-like protein; Provisional
Probab=100.00 E-value=6.9e-32 Score=266.46 Aligned_cols=285 Identities=20% Similarity=0.216 Sum_probs=231.5
Q ss_pred HHHHHHHHcC---ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCCCCCCCC
Q 012683 16 QQFLNAACTG---NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR--EGKTDVCKYLLEELKLDVDTQDEDG 90 (458)
Q Consensus 16 ~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~g 90 (458)
..|+.-+... +++.|+.|+.... + .+. ..+.|+++.+.. .++.++|++|++. |++++..+..|
T Consensus 4 ~~l~~y~~~~~~~~~~~v~~ll~~~~-------~--~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~-Gadvn~~d~~g 71 (489)
T PHA02798 4 DNLYNYITFSDNVKLSTVKLLIKSCN-------P--NEI--VNEYSIFQKYLQRDSPSTDIVKLFINL-GANVNGLDNEY 71 (489)
T ss_pred hhhHHHeeecCcccHHHHHHHHhcCC-------h--hhh--cccchHHHHHHhCCCCCHHHHHHHHHC-CCCCCCCCCCC
Confidence 3455555543 3678999986411 0 111 346677664443 4589999999998 99999999999
Q ss_pred CcHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCCCCCCCCC-cHHHH
Q 012683 91 ETPLLHAARQ-----GHTETAKYLFEHGANPTIPSNLGATALHHSAGIG---NIELLTYLLSKGAEVDSESDAG-TPLIW 161 (458)
Q Consensus 91 ~t~L~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~-t~l~~ 161 (458)
.||||.|+.+ ++.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+++|++++..+..+ ||||+
T Consensus 72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~ 151 (489)
T PHA02798 72 STPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQV 151 (489)
T ss_pred CChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHH
Confidence 9999999875 6789999999999999999999999999999875 7899999999999999887666 99999
Q ss_pred HHhCCC---HHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHc----CCHHHHHHHHHcCCCcccc-CCCCcHHH-------
Q 012683 162 AAGHGQ---QEAVKVLLEHHANPNAET-EDNITPLLSAVAA----GSLTCLDLLIQAGANANIV-AGGATPLH------- 225 (458)
Q Consensus 162 A~~~~~---~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~----~~~~~~~~Ll~~g~~~~~~-~~g~t~L~------- 225 (458)
|+..++ .+++++|+++|++++..+ ..|.||||.++.. ++.+++++|+++|++++.. ..|.++++
T Consensus 152 a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~ 231 (489)
T PHA02798 152 YLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLL 231 (489)
T ss_pred HHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHH
Confidence 999988 999999999999999874 5789999998765 4899999999999999986 56778766
Q ss_pred HHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHh
Q 012683 226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEET 305 (458)
Q Consensus 226 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (458)
.+...++.+++++|+. |++++.+|..|+||||+|+..|+.+++++|++.|++. +..+..+.+++.++ ......+.+
T Consensus 232 ~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi-n~~d~~G~TpL~~A--~~~~~~~iv 307 (489)
T PHA02798 232 YDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI-NIITELGNTCLFTA--FENESKFIF 307 (489)
T ss_pred hhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcc-cccCCCCCcHHHHH--HHcCcHHHH
Confidence 2445678899998776 5999999999999999999999999999999998753 44445555555544 445667777
Q ss_pred hhhhcCCCCCC
Q 012683 306 RNLKENNAPKD 316 (458)
Q Consensus 306 ~~l~~~~~~~~ 316 (458)
..+++.+++..
T Consensus 308 ~~lL~~~~~~~ 318 (489)
T PHA02798 308 NSILNKKPNKN 318 (489)
T ss_pred HHHHccCCCHH
Confidence 77887776543
No 28
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=246.58 Aligned_cols=212 Identities=35% Similarity=0.512 Sum_probs=182.3
Q ss_pred HHHHcCCHHHHHHHHHhCC-CC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCC--------CCCCCCcHHH
Q 012683 62 FAAREGKTDVCKYLLEELK-LD---VDTQDEDGETPLLHAARQGHTETAKYLFE-HGANPTI--------PSNLGATALH 128 (458)
Q Consensus 62 ~A~~~g~~~~v~~ll~~~~-~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~--------~~~~g~t~L~ 128 (458)
-|++.|.+..+..|+.... .+ +-....+|.|||.+|+++||.++|++|++ .++++.. ....|-+||.
T Consensus 10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW 89 (615)
T KOG0508|consen 10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW 89 (615)
T ss_pred HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence 4566666665555543311 00 11224578899999999999999999998 4555543 2456889999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 012683 129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207 (458)
Q Consensus 129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L 207 (458)
.|+..||+++|+.|+++|+++|.....+ |||.-||..|+.+++++|+++|+|++..|..|.|+||+|+.+|+.+++++|
T Consensus 90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyL 169 (615)
T KOG0508|consen 90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYL 169 (615)
T ss_pred HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHH
Confidence 9999999999999999999998777666 999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 012683 208 IQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP 274 (458)
Q Consensus 208 l~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 274 (458)
++.|+|+|.. ..|+|+||.|++.|+++++++|+++|+.++.-.. |.|||..|+..|+.++|++|++
T Consensus 170 le~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~-GmtPL~~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 170 LEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGH-GMTPLLLAAVTGHTDIVERLLQ 236 (615)
T ss_pred HHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCC-CCchHHHHhhhcchHHHHHHhc
Confidence 9999999988 7899999999999999999999999998876554 9999999999999999999996
No 29
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=240.90 Aligned_cols=221 Identities=31% Similarity=0.445 Sum_probs=196.6
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC--------CC
Q 012683 17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ--------DE 88 (458)
Q Consensus 17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~--------~~ 88 (458)
..+.|++.|++..+..|+-.-. ...+.. .--...+|.|||-+||++||.++|++|++++++++... ..
T Consensus 7 ~~~naa~~g~l~~l~~ll~~~s--~~ei~~--l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~I 82 (615)
T KOG0508|consen 7 VVINAARDGKLQLLAKLLINSS--NEEIIS--LIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETI 82 (615)
T ss_pred HHHHHhhhhhHHHHHHHHhCCc--hHHHHH--HhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCccc
Confidence 3458999999998888875311 111111 11135678899999999999999999999888776543 35
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCC
Q 012683 89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~ 167 (458)
.|.+||-.|+..||.++|+.|+++|+++|.......|||.-||.-|+++++++|+++|++++..+..+ |.|++|+..|+
T Consensus 83 egappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh 162 (615)
T KOG0508|consen 83 EGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH 162 (615)
T ss_pred CCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc
Confidence 78899999999999999999999999999998889999999999999999999999999999888777 99999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHH
Q 012683 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK 241 (458)
Q Consensus 168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~ 241 (458)
.+|+++|++.|+|+|.++..|+|+||.++..|+++++++|+.+|+.+.....|.|||..|+..|+.++|+.|+.
T Consensus 163 ~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 163 VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ 236 (615)
T ss_pred hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999997
No 30
>PHA02730 ankyrin-like protein; Provisional
Probab=100.00 E-value=2.9e-31 Score=258.90 Aligned_cols=295 Identities=15% Similarity=0.163 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcC--CHHHHHHHHHhCCC--CCCC
Q 012683 13 ERVQQFLNAACTG---NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG--KTDVCKYLLEELKL--DVDT 85 (458)
Q Consensus 13 ~~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~ll~~~~~--~~~~ 85 (458)
.+.++||.|+..| +.++|+.|++. |+++ +.+|..|.||||+|+..| +.++|++|++. |+ +++.
T Consensus 40 ~G~TaLh~A~~~~~~~~~eivklLLs~----GAdi-----n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~-~~~~~~~~ 109 (672)
T PHA02730 40 RGNNALHCYVSNKCDTDIKIVRLLLSR----GVER-----LCRNNEGLTPLGVYSKRKYVKSQIVHLLISS-YSNASNEL 109 (672)
T ss_pred CCCcHHHHHHHcCCcCcHHHHHHHHhC----CCCC-----cccCCCCCChHHHHHHcCCCcHHHHHHHHhc-CCCCCccc
Confidence 3678999999997 59999999976 6554 578899999999999977 79999999997 55 4477
Q ss_pred CCCCCCcHHHHHHH--cCCHHHHHHHHH-cCCCCCCCCC-----CCCcHHHHHHHcCCHHHHHHHHhCCCCCC-------
Q 012683 86 QDEDGETPLLHAAR--QGHTETAKYLFE-HGANPTIPSN-----LGATALHHSAGIGNIELLTYLLSKGAEVD------- 150 (458)
Q Consensus 86 ~~~~g~t~L~~A~~--~g~~~~v~~Ll~-~~~~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~------- 150 (458)
.+..+.+|||.++. +++.++|++|++ .+++++.... .|.+|++++...++++++++|+++|++++
T Consensus 110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~ 189 (672)
T PHA02730 110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC 189 (672)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence 77779999999999 899999999996 6788776532 78999999999999999999999999985
Q ss_pred -CCCCCC-cHHHHH------HhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHH--HHHcCCHHHHHHHHH-----------
Q 012683 151 -SESDAG-TPLIWA------AGHGQQEAVKVLLEHHANPNAETEDNITPLLS--AVAAGSLTCLDLLIQ----------- 209 (458)
Q Consensus 151 -~~~~~~-t~l~~A------~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~--a~~~~~~~~~~~Ll~----------- 209 (458)
.....+ |.||+. ..+++.+++++|+++|+++|.+|.+|.||||+ +...|+.+++++|++
T Consensus 190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~ 269 (672)
T PHA02730 190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDI 269 (672)
T ss_pred cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccc
Confidence 112223 445543 34578999999999999999999999999995 555677999999999
Q ss_pred ---------------------cCCCccc--------------------c-CCCCc---------------------HHHH
Q 012683 210 ---------------------AGANANI--------------------V-AGGAT---------------------PLHI 226 (458)
Q Consensus 210 ---------------------~g~~~~~--------------------~-~~g~t---------------------~L~~ 226 (458)
+|+|... . ..|.+ .||.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~ 349 (672)
T PHA02730 270 SQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLIN 349 (672)
T ss_pred cchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHH
Confidence 7888866 1 23433 6676
Q ss_pred HHhcC---cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC----HHHHHhhcCCCCC-CCCCCCcchhhHHHH-HHhh
Q 012683 227 AADIG---STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN----REAVEILFPLTSE-DPSIPKWTVDGILEY-MQSE 297 (458)
Q Consensus 227 A~~~~---~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~-~~~~ 297 (458)
-...+ +.+++++|+++|++++.. ..|+||||+|+..++ .+++++|+++|+. +.+..+..+.+++.. ..+.
T Consensus 350 Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~ 428 (672)
T PHA02730 350 YLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSR 428 (672)
T ss_pred HHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHH
Confidence 66655 689999999999999986 799999999998875 8999999999874 445555555555532 1111
Q ss_pred -cc--------chhHHhhhhhcCCCCCCCC
Q 012683 298 -SG--------KQLEETRNLKENNAPKDKA 318 (458)
Q Consensus 298 -~~--------~~~~~~~~l~~~~~~~~~~ 318 (458)
.+ ..++.+..++..++.....
T Consensus 429 ~~n~~~~~~e~~~~~ivk~LIs~GADINak 458 (672)
T PHA02730 429 FNNCGYHCYETILIDVFDILSKYMDDIDMI 458 (672)
T ss_pred hccccccccchhHHHHHHHHHhcccchhcc
Confidence 11 1335578888888776544
No 31
>PHA02917 ankyrin-like protein; Provisional
Probab=100.00 E-value=7.1e-31 Score=263.05 Aligned_cols=300 Identities=16% Similarity=0.115 Sum_probs=225.3
Q ss_pred hHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683 27 LDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT 103 (458)
Q Consensus 27 ~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~ 103 (458)
++.|++|+.. +. ..+..|.+|.||||+|+.. |+.++|++|++. |++++..+..|.||||.|+..|+.
T Consensus 12 ~~~~~~l~~~----~~-----~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~~~~g~TpL~~Aa~~g~~ 81 (661)
T PHA02917 12 LDELKQMLRD----RD-----PNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHKNWRQLTPLEEYTNSRHV 81 (661)
T ss_pred HHHHHHHHhc----cC-----cccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCCh
Confidence 4667777753 22 2356788999999997555 889999999997 999999999999999999999985
Q ss_pred ----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHH--hCCCHHHHHHHHh
Q 012683 104 ----ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAA--GHGQQEAVKVLLE 176 (458)
Q Consensus 104 ----~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~--~~~~~~~~~~Ll~ 176 (458)
++++.|++.+...+..+ ..++++.|+..++.+++++|+++|++++..+..+ ||||.++ ..|+.+++++|++
T Consensus 82 ~v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~ 159 (661)
T PHA02917 82 KVNKDIAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE 159 (661)
T ss_pred hHHHHHHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH
Confidence 45678887654444433 2367788999999999999999999999887555 9999654 5789999999999
Q ss_pred cCCCCCCCCC---CC-----------CcHHHHHHH-----------cCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc
Q 012683 177 HHANPNAETE---DN-----------ITPLLSAVA-----------AGSLTCLDLLIQAGANANIV-AGGATPLHIAADI 230 (458)
Q Consensus 177 ~~~~~~~~~~---~~-----------~t~l~~a~~-----------~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~ 230 (458)
+|++++..+. .| .||||+|+. .++.+++++|+++|++++.. .+|.||||+|+..
T Consensus 160 ~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~ 239 (661)
T PHA02917 160 NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKS 239 (661)
T ss_pred cCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHc
Confidence 9999986543 34 599999986 46899999999999999988 7899999999999
Q ss_pred CcH--HHHHHHHHcCCCCC----CCCCCCCcHHHHHHH-------cC--CHHHHHhhcCCCCCCCCC------CCcchhh
Q 012683 231 GST--EIIKCLLKAGADPN----VTDEDGQKPIQVAAA-------RG--NREAVEILFPLTSEDPSI------PKWTVDG 289 (458)
Q Consensus 231 ~~~--~iv~~Ll~~g~~~~----~~~~~g~t~l~~A~~-------~~--~~~~v~~Ll~~~~~~~~~------~~~~~~~ 289 (458)
|+. ++|++|++ |++++ ..|..|.+|+++|+. ++ +.+++++|++.|...+.. .......
T Consensus 240 g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~ 318 (661)
T PHA02917 240 SHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKET 318 (661)
T ss_pred CCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHH
Confidence 985 79999985 87764 466778899999984 22 789999999999753211 1111111
Q ss_pred ------------HHHH-HHh--hccchhHHhhhhhcCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 012683 290 ------------ILEY-MQS--ESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKA 339 (458)
Q Consensus 290 ------------~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
++.. ... .....++.++.|++.++.++..+..............++.+..
T Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~ 383 (661)
T PHA02917 319 ISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLK 383 (661)
T ss_pred HHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHH
Confidence 1111 111 1122466899999999998876655443322222334444444
No 32
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=100.00 E-value=5.8e-32 Score=253.04 Aligned_cols=208 Identities=32% Similarity=0.441 Sum_probs=196.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcC
Q 012683 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHSAGIG 134 (458)
Q Consensus 56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~ 134 (458)
..+-++.|+++|+++.|+.+++..|..++..|.+|-|+||.|+.+++.+++++|+++|+++|... ..+.||||+|+++|
T Consensus 44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G 123 (600)
T KOG0509|consen 44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG 123 (600)
T ss_pred hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence 45678999999999999999997789999999999999999999999999999999999999887 77899999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 012683 135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213 (458)
Q Consensus 135 ~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 213 (458)
++.++.+|+++|++++..+..+ +|+|.|+..++.-++-+|+.+|++++.+|.+|+||||+|+.+|....++.|++.|+.
T Consensus 124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~ 203 (600)
T KOG0509|consen 124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS 203 (600)
T ss_pred cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence 9999999999999999888777 999999999999999999999999999999999999999999999889999999999
Q ss_pred cccc--CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683 214 ANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263 (458)
Q Consensus 214 ~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 263 (458)
+... ..|+||||+|+..|+..++.+|++.|++.+.+|.+|.||+++|...
T Consensus 204 ~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 204 LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred ccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence 9887 6799999999999999999977888899999999999999999876
No 33
>PHA02730 ankyrin-like protein; Provisional
Probab=100.00 E-value=9.8e-31 Score=255.18 Aligned_cols=259 Identities=12% Similarity=0.115 Sum_probs=203.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCC-------CC-CCCCcHHHHHH------HcCCHHHHHHHHHcCCCCCCCC
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDT-------QD-EDGETPLLHAA------RQGHTETAKYLFEHGANPTIPS 120 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-------~~-~~g~t~L~~A~------~~g~~~~v~~Ll~~~~~~~~~~ 120 (458)
.|.+|++++...++.++|++|++. |++++- .+ .-+.|.||+.+ .+++.+++++|+++|++++.+|
T Consensus 154 ~~~~~~yl~~~~~~~eIvklLi~~-g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd 232 (672)
T PHA02730 154 LGLVDIYVTTPNPRPEVLLWLLKS-ECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRD 232 (672)
T ss_pred cchhhhhHhcCCCchHHHHHHHHc-CCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCC
Confidence 788999999999999999999998 988851 22 22334566444 4578999999999999999999
Q ss_pred CCCCcHHHH--HHHcCCHHHHHHHHh--------------------------------CCCCCCC---------------
Q 012683 121 NLGATALHH--SAGIGNIELLTYLLS--------------------------------KGAEVDS--------------- 151 (458)
Q Consensus 121 ~~g~t~L~~--A~~~~~~~~~~~Ll~--------------------------------~~~~~~~--------------- 151 (458)
..|.||||+ +...++.+++++|++ +|++...
T Consensus 233 ~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 312 (672)
T PHA02730 233 EGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVM 312 (672)
T ss_pred CCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhh
Confidence 999999995 555677999999999 5666533
Q ss_pred -----CCCCC-c---------------------HHHHHHhCC---CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC-
Q 012683 152 -----ESDAG-T---------------------PLIWAAGHG---QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS- 200 (458)
Q Consensus 152 -----~~~~~-t---------------------~l~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~- 200 (458)
.+..+ + .|+.-..++ +.+++++|+++|++++.. ..|.||||+|+..++
T Consensus 313 ~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn 391 (672)
T PHA02730 313 RSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNN 391 (672)
T ss_pred hccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCC
Confidence 11111 2 455545544 689999999999999985 789999999988875
Q ss_pred ---HHHHHHHHHcCC--Ccccc-CCCCcHHHH---HHhcC---------cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683 201 ---LTCLDLLIQAGA--NANIV-AGGATPLHI---AADIG---------STEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262 (458)
Q Consensus 201 ---~~~~~~Ll~~g~--~~~~~-~~g~t~L~~---A~~~~---------~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~ 262 (458)
.+++++|+++|+ +++.. ..|.||||. |...+ ..+++++|+++|++++.+|..|+||||+|+.
T Consensus 392 ~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~ 471 (672)
T PHA02730 392 IVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVD 471 (672)
T ss_pred cchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHH
Confidence 899999999998 56666 679999984 33332 2367999999999999999999999999999
Q ss_pred cCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCC
Q 012683 263 RGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPK 315 (458)
Q Consensus 263 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (458)
.++.+++++|+++|+.........+.+++.+.........+.+..++..++..
T Consensus 472 ~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i 524 (672)
T PHA02730 472 VNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL 524 (672)
T ss_pred hCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence 99999999999998865544433456666665543335577778888777544
No 34
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.98 E-value=1.7e-32 Score=277.44 Aligned_cols=257 Identities=33% Similarity=0.458 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCC
Q 012683 12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE 91 (458)
Q Consensus 12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~ 91 (458)
.....+++.|+..|.++.++.++.. +.. .+....+|.||||.|+.+++.++|+.++++ +++++..+..|.
T Consensus 372 ~k~~~pl~la~~~g~~~~v~Lll~~----ga~-----~~~~gk~gvTplh~aa~~~~~~~v~l~l~~-gA~~~~~~~lG~ 441 (1143)
T KOG4177|consen 372 EKGFTPLHLAVKSGRVSVVELLLEA----GAD-----PNSAGKNGVTPLHVAAHYGNPRVVKLLLKR-GASPNAKAKLGY 441 (1143)
T ss_pred ccCCcchhhhcccCchhHHHhhhhc----cCC-----cccCCCCCcceeeehhhccCcceEEEEecc-CCChhhHhhcCC
Confidence 3444555566666666655555544 111 344555666666666666666666666655 666666666666
Q ss_pred cHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHH
Q 012683 92 TPLLHAARQG-HTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE 169 (458)
Q Consensus 92 t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~ 169 (458)
||+|+|+..| ..++...+++.|.+++.....|.||||+|...|+.+++..|++.++..+.....+ +++|.+...+...
T Consensus 442 T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~ 521 (1143)
T KOG4177|consen 442 TPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVK 521 (1143)
T ss_pred ChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHH
Confidence 6666666666 6666666666666666666667777777777777777777776665554444433 6777777777777
Q ss_pred HHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q 012683 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNV 248 (458)
Q Consensus 170 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~ 248 (458)
+++.++++|++++.++..|+||||.|+.+|+.++|++|+++|++++.. +.|+||||.||..|+.+++.+|+++|+++|.
T Consensus 522 ~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna 601 (1143)
T KOG4177|consen 522 VAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA 601 (1143)
T ss_pred HHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence 777777777777777777777777777777777777777777777776 6677777777777777777777777777777
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 249 TDEDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 249 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
.|.+|.|||++|+..|+.+++++|+..+..
T Consensus 602 ~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 602 ADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred ccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 777777777777777777777777776665
No 35
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.97 E-value=2.8e-32 Score=275.93 Aligned_cols=291 Identities=30% Similarity=0.422 Sum_probs=255.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCC
Q 012683 11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDG 90 (458)
Q Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g 90 (458)
.+.+.+++|.+++.|+.+....+.....+ ....+..|.||+|.|+.+|..++++.++.+ |.+++..+..|
T Consensus 338 r~~g~t~lHlaa~~~~~~~~~~l~~~~~~---------~~~a~~k~~~pl~la~~~g~~~~v~Lll~~-ga~~~~~gk~g 407 (1143)
T KOG4177|consen 338 RTAGYTPLHLAAKEGQVEVAGALLEHGAQ---------RRQAEEKGFTPLHLAVKSGRVSVVELLLEA-GADPNSAGKNG 407 (1143)
T ss_pred CcCCcccccHhhhhhhHHHHHHhhccccc---------cCcccccCCcchhhhcccCchhHHHhhhhc-cCCcccCCCCC
Confidence 34567789999999999866666554211 234567899999999999999999999998 99999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCH
Q 012683 91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG-NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168 (458)
Q Consensus 91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~ 168 (458)
.||||.|+..++.++++.++++|++++..+..|.|++|+|+..| ..+++..+++.|.+++.....+ ||||+|...|+.
T Consensus 408 vTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~ 487 (1143)
T KOG4177|consen 408 VTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHT 487 (1143)
T ss_pred cceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCc
Confidence 99999999999999999999999999999999999999999999 8999999999999998777666 999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q 012683 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN 247 (458)
Q Consensus 169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~ 247 (458)
++++.|++.++..+.....+-+++|.+...+...+++.++++|++++.. ..|+||||+||..|+.++|++|+++|++++
T Consensus 488 ~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ 567 (1143)
T KOG4177|consen 488 EVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN 567 (1143)
T ss_pred hHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc
Confidence 9999999999888888999999999999999999999999999999988 779999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCC
Q 012683 248 VTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAP 314 (458)
Q Consensus 248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (458)
.+++.|+||||.|+..|+.+|+.+|+++|+.. +..+.+..+++ ..+.....+...+.+...+.+
T Consensus 568 ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v-na~d~~g~TpL--~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 568 AKDKLGYTPLHQAAQQGHNDIAELLLKHGASV-NAADLDGFTPL--HIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred ccCCCCCChhhHHHHcChHHHHHHHHHcCCCC-CcccccCcchh--HHHHHhcccchhhHHHhccCc
Confidence 99999999999999999999999999998743 34444444444 444455667777777766665
No 36
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=244.45 Aligned_cols=206 Identities=32% Similarity=0.461 Sum_probs=191.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-C-cHHHHHHhCCC
Q 012683 91 ETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-G-TPLIWAAGHGQ 167 (458)
Q Consensus 91 ~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~-t~l~~A~~~~~ 167 (458)
.+.++.|++.|..+.|+.|++. |.+++..|..|.|+||+|+.+++++++++|+++|+++|..... + ||||+|+++|+
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~ 124 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH 124 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence 4678899999999999999998 9999999999999999999999999999999999999987743 2 99999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q 012683 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADP 246 (458)
Q Consensus 168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~ 246 (458)
..++++|+++|+|++..|.+|.+|+|.|+..|+.-++-+|+.+|++++.. .+|+||||+|+.+|+...++.|++.|+.+
T Consensus 125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~ 204 (600)
T KOG0509|consen 125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL 204 (600)
T ss_pred HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999988 78999999999999999999999999999
Q ss_pred CCCC-CCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhh
Q 012683 247 NVTD-EDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSE 297 (458)
Q Consensus 247 ~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 297 (458)
..+| ..|.||||+|+..|+..+++ |+..++.+.+.++..+.++..++.+.
T Consensus 205 ~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 205 LLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred cccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence 9888 89999999999999999999 76677777777777777777777655
No 37
>PHA02792 ankyrin-like protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=244.69 Aligned_cols=284 Identities=14% Similarity=0.094 Sum_probs=215.5
Q ss_pred HHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHH-cCCHHHHHHHHHhCCCCC---------------
Q 012683 20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR-EGKTDVCKYLLEELKLDV--------------- 83 (458)
Q Consensus 20 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~ll~~~~~~~--------------- 83 (458)
.|...|++++|+.|+.+ |+++ +.++..|.||+|+|+. .|+.+++++|+++ |+++
T Consensus 78 ~~s~n~~lElvk~LI~~----GAdv-----N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~-Gad~~~~~~~g~~~~~~~~ 147 (631)
T PHA02792 78 LCSDNIDIELLKLLISK----GLEI-----NSIKNGINIVEKYATTSNPNVDVFKLLLDK-GIPTCSNIQYGYKIIIEQI 147 (631)
T ss_pred HHHhcccHHHHHHHHHc----CCCc-----ccccCCCCcceeEeecCCCChHHHHHHHHC-CCCcccccccCcchhhhhc
Confidence 45677999999999987 5554 4566678999999966 6999999999998 8653
Q ss_pred ---------------------CCCCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-
Q 012683 84 ---------------------DTQDEDGETPLLHAARQG-------HTETAKYLFEHGANPTIPSNLGATALHHSAGIG- 134 (458)
Q Consensus 84 ---------------------~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~- 134 (458)
+..+..|.||||+|+.++ +.++++.|+++|++++..|..|.||||+|+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~ 227 (631)
T PHA02792 148 TRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCD 227 (631)
T ss_pred ccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHccc
Confidence 234557999999999999 899999999999999999999999999999998
Q ss_pred -CHHHHHHHHhCCCCCC-------------C------CC--------CCCc-----------------------------
Q 012683 135 -NIELLTYLLSKGAEVD-------------S------ES--------DAGT----------------------------- 157 (458)
Q Consensus 135 -~~~~~~~Ll~~~~~~~-------------~------~~--------~~~t----------------------------- 157 (458)
..+++++|+...-+.. . .+ .+++
T Consensus 228 i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q 307 (631)
T PHA02792 228 IKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQ 307 (631)
T ss_pred chHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHH
Confidence 7888988887522110 0 00 0000
Q ss_pred -HHHHHHhCC--CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CC--CCcHHHHHHhcC
Q 012683 158 -PLIWAAGHG--QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AG--GATPLHIAADIG 231 (458)
Q Consensus 158 -~l~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~--g~t~L~~A~~~~ 231 (458)
.||.=..++ +.+++++|+++|++... ......++.|+..|+.+++++|+++|++++.. .+ +.||||.|+..+
T Consensus 308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~ 385 (631)
T PHA02792 308 DLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIH 385 (631)
T ss_pred HHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhc
Confidence 012222223 57899999999998752 23566788999999999999999999999877 33 469999988776
Q ss_pred cH---HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhc--------cc
Q 012683 232 ST---EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSES--------GK 300 (458)
Q Consensus 232 ~~---~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 300 (458)
.. +++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+.. +..+..+.+++.++.... ..
T Consensus 386 ~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADI-N~kD~~G~TpL~~A~~~~~~~~~~i~~~ 464 (631)
T PHA02792 386 ESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADI-NITTKYGSTCIGICVILAHACIPEIAEL 464 (631)
T ss_pred cHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHHHhcccHHHHHH
Confidence 54 4688899999999999999999999999999999999999997653 455556667766654311 12
Q ss_pred hhHHhhhhhcCCCCCC
Q 012683 301 QLEETRNLKENNAPKD 316 (458)
Q Consensus 301 ~~~~~~~l~~~~~~~~ 316 (458)
..+....++..+...+
T Consensus 465 ~~~il~lLLs~~p~i~ 480 (631)
T PHA02792 465 YIKILEIILSKLPTIE 480 (631)
T ss_pred HHHHHHHHHhcCCChh
Confidence 2344555555554443
No 38
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.97 E-value=1.2e-28 Score=214.41 Aligned_cols=178 Identities=20% Similarity=0.247 Sum_probs=126.4
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCC-CCCCcHHHHH
Q 012683 54 ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG--HTETAKYLFEHGANPTIPS-NLGATALHHS 130 (458)
Q Consensus 54 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A 130 (458)
..+.||||.|+..|+.++|+.|++. ++..+..|.||||+|+.++ +.+++++|+++|++++..+ ..|.||||+|
T Consensus 19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a 94 (209)
T PHA02859 19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY 94 (209)
T ss_pred hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence 3456666666666666666666643 3445556666666666543 5666666666666665554 2455555554
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHH
Q 012683 131 AGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA--AGSLTCLDLLI 208 (458)
Q Consensus 131 ~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll 208 (458)
+..+ ..++.+++++|+++|++++..+..|.||||+|+. .++.+++++|+
T Consensus 95 ~~~~-----------------------------~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li 145 (209)
T PHA02859 95 LSFN-----------------------------KNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLI 145 (209)
T ss_pred HHhC-----------------------------ccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence 4221 1235677778888888888888888888888765 35788899999
Q ss_pred HcCCCcccc-CCCCcHHHH-HHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 209 QAGANANIV-AGGATPLHI-AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264 (458)
Q Consensus 209 ~~g~~~~~~-~~g~t~L~~-A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 264 (458)
+.|++++.. ..|.||||. |+..++.+++++|+++|++++.+|..|+||||+|+.++
T Consensus 146 ~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 146 DSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred HcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 999888877 678999995 56678999999999999999999999999999998654
No 39
>PHA02795 ankyrin-like protein; Provisional
Probab=99.97 E-value=7.2e-29 Score=231.26 Aligned_cols=207 Identities=19% Similarity=0.154 Sum_probs=181.9
Q ss_pred cCCHHHH-HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHH--cCCH
Q 012683 66 EGKTDVC-KYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPT------IPSNLGATALHHSAG--IGNI 136 (458)
Q Consensus 66 ~g~~~~v-~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~A~~--~~~~ 136 (458)
+.-++++ ++++.+ |.+++....+| +|+..+..+++++|+++|++++ .++..++|+||+++. .|+.
T Consensus 58 ~~~~~~~~~~~~~~-~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ 131 (437)
T PHA02795 58 CDPVDVLYDYFRIH-RDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEI 131 (437)
T ss_pred CCHHHHHHHHHHHc-Ccchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCH
Confidence 4455554 455665 99999887777 8999999999999999999988 677889999999999 8999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCC------CCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683 137 ELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAET------EDNITPLLSAVAAGSLTCLDLLIQA 210 (458)
Q Consensus 137 ~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~------~~~~t~l~~a~~~~~~~~~~~Ll~~ 210 (458)
+++++|+++|++++..+ +.||+|.|+..++.+++++|+++|++..... ..+.+++|.+...++.+++++|+++
T Consensus 132 eiV~~LI~~GADIn~~~-~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~ 210 (437)
T PHA02795 132 DIVDFMVDHGAVIYKIE-CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY 210 (437)
T ss_pred HHHHHHHHCCCCCCCCC-CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC
Confidence 99999999999998643 3699999999999999999999998543222 3477899999999999999999999
Q ss_pred CCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--------CHHHHHhhcCCCCCC
Q 012683 211 GANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG--------NREAVEILFPLTSED 279 (458)
Q Consensus 211 g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~--------~~~~v~~Ll~~~~~~ 279 (458)
|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+| +.+++++|+++++..
T Consensus 211 GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI 288 (437)
T PHA02795 211 IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI 288 (437)
T ss_pred cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence 9999988 78999999999999999999999999999999999999999999988 469999999887643
No 40
>PHA02795 ankyrin-like protein; Provisional
Probab=99.96 E-value=3.9e-28 Score=226.34 Aligned_cols=208 Identities=18% Similarity=0.161 Sum_probs=181.0
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCC------CCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683 62 FAAREGKTDVCKYLLEELKLDVD------TQDEDGETPLLHAAR--QGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133 (458)
Q Consensus 62 ~A~~~g~~~~v~~ll~~~~~~~~------~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 133 (458)
+|+..+..+++++|+.+ |++++ .++..++|+||.++. .|+.++|++|+++|++++.. .+.||+|.|+..
T Consensus 83 ~~~~~~~k~~~~~l~s~-~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~ 159 (437)
T PHA02795 83 LFAYITYKDIISALVSK-NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK 159 (437)
T ss_pred HHhhcchHHHHHHHHhc-ccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc
Confidence 99999999999999998 99988 777889999999999 89999999999999999874 458999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCC-------CCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 012683 134 GNIELLTYLLSKGAEVDSES-------DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL 206 (458)
Q Consensus 134 ~~~~~~~~Ll~~~~~~~~~~-------~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 206 (458)
++.+++++|+++|++..... .+.+++|.|...++.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus 160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVel 239 (437)
T PHA02795 160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSW 239 (437)
T ss_pred CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999997532221 13388999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcccc-CCCCcHHHHHHhcC--------cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683 207 LIQAGANANIV-AGGATPLHIAADIG--------STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS 277 (458)
Q Consensus 207 Ll~~g~~~~~~-~~g~t~L~~A~~~~--------~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 277 (458)
|+++|++++.. ..|.||||+|+..| +.+++++|+++|++++..+.. .+.. ...+.++++.++.+..
T Consensus 240 LL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~---~~~~--~~~n~~~ik~lI~y~~ 314 (437)
T PHA02795 240 LLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA---ILNN--TIENHDVIKLCIKYFM 314 (437)
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH---hhhc--ccchHHHHHHHHHHHH
Confidence 99999999988 78999999999998 469999999999988875532 2221 1226788888776543
No 41
>PHA02792 ankyrin-like protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=231.04 Aligned_cols=292 Identities=14% Similarity=0.143 Sum_probs=218.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHH-HHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHF-AAREGKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
+.++|+.-.-+.+...-..++-.+.. ..+..+.+|.+++|+ |+..|++++|++|+++ |++++.++..+.|
T Consensus 37 ~~t~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~~n~~~~ 107 (631)
T PHA02792 37 GETPLKAYVTKKNNNIKNDVVILLLS--------SVDYKNINDFDIFEYLCSDNIDIELLKLLISK-GLEINSIKNGINI 107 (631)
T ss_pred CCccHHHHHhhhhhhHHHHHHHHHHh--------CCCcCccCCccHHHHHHHhcccHHHHHHHHHc-CCCcccccCCCCc
Confidence 44666666655554333333322111 123566788889976 5668999999999998 9999999999999
Q ss_pred HHHHHHH-cCCHHHHHHHHHcCCCCC------------------------------------CCCCCCCcHHHHHHHcC-
Q 012683 93 PLLHAAR-QGHTETAKYLFEHGANPT------------------------------------IPSNLGATALHHSAGIG- 134 (458)
Q Consensus 93 ~L~~A~~-~g~~~~v~~Ll~~~~~~~------------------------------------~~~~~g~t~L~~A~~~~- 134 (458)
|+|+|+. .++.+++++|+++|++++ ..+..|.||||+|+.++
T Consensus 108 ~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s 187 (631)
T PHA02792 108 VEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRS 187 (631)
T ss_pred ceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCC
Confidence 9999966 699999999999998742 23556999999999999
Q ss_pred ------CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCC--CHHHHHHHHhcCCCCC-------------C------CCC
Q 012683 135 ------NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--QQEAVKVLLEHHANPN-------------A------ETE 186 (458)
Q Consensus 135 ------~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~--~~~~~~~Ll~~~~~~~-------------~------~~~ 186 (458)
+.++++.|+++|++++..+..+ ||||+|+.+. +.+++++|++...+.. . .|.
T Consensus 188 ~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~ 267 (631)
T PHA02792 188 QDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDN 267 (631)
T ss_pred cccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccH
Confidence 8999999999999998777655 9999999999 8899999986422100 0 000
Q ss_pred -------CC------------------------------CcHHHHHHHcC--CHHHHHHHHHcCCCccccCCCCcHHHHH
Q 012683 187 -------DN------------------------------ITPLLSAVAAG--SLTCLDLLIQAGANANIVAGGATPLHIA 227 (458)
Q Consensus 187 -------~~------------------------------~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~g~t~L~~A 227 (458)
.| .-.||.-..++ +.+++++|+++|+++.. .....+++.|
T Consensus 268 ~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r-~~~~n~~~~A 346 (631)
T PHA02792 268 YIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR-FKHINKYFQK 346 (631)
T ss_pred HHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc-CCcchHHHHH
Confidence 01 11244444445 67899999999999752 2356679999
Q ss_pred HhcCcHHHHHHHHHcCCCCCCCCCCC--CcHHHHHHHcCCH---HHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchh
Q 012683 228 ADIGSTEIIKCLLKAGADPNVTDEDG--QKPIQVAAARGNR---EAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQL 302 (458)
Q Consensus 228 ~~~~~~~iv~~Ll~~g~~~~~~~~~g--~t~l~~A~~~~~~---~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (458)
+..|+.++|++|+++|++++.+|..| .||||+|...... +++++|++++++. +..+..+.+++..+......
T Consensus 347 a~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI---N~kD~~G~TPLh~Aa~~~n~ 423 (631)
T PHA02792 347 FDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI---NKIDKHGRSILYYCIESHSV 423 (631)
T ss_pred HHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc---ccccccCcchHHHHHHcCCH
Confidence 99999999999999999999999875 6999998877664 4688889988753 33444455555555566778
Q ss_pred HHhhhhhcCCCCCCCC
Q 012683 303 EETRNLKENNAPKDKA 318 (458)
Q Consensus 303 ~~~~~l~~~~~~~~~~ 318 (458)
+.+..++..++.....
T Consensus 424 eivelLLs~GADIN~k 439 (631)
T PHA02792 424 SLVEWLIDNGADINIT 439 (631)
T ss_pred HHHHHHHHCCCCCCCc
Confidence 8899999998876644
No 42
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.96 E-value=7e-28 Score=209.51 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=124.8
Q ss_pred hhhcccCCCcHHHHHHHcC--CHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCC
Q 012683 49 ADIKDANKRGALHFAAREG--KTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQ---GHTETAKYLFEHGANPTIPSNL 122 (458)
Q Consensus 49 ~~~~~~~g~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~ 122 (458)
.+..+..|.||||+|+..+ +.+++++|++. |++++.++ ..|.||||+|+.. ++.+++++|+++|++++..|..
T Consensus 44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~ 122 (209)
T PHA02859 44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDED 122 (209)
T ss_pred hhccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCC
Confidence 4567889999999999854 89999999998 99999987 5899999998764 4799999999999999999999
Q ss_pred CCcHHHHHHHc--CCHHHHHHHHhCCCCCCCCCCCC-cHHHH-HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 012683 123 GATALHHSAGI--GNIELLTYLLSKGAEVDSESDAG-TPLIW-AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA 198 (458)
Q Consensus 123 g~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~-A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~ 198 (458)
|.||||.|+.. ++.+++++|++.|++++..+..+ ||||. ++..++.+++++|+++|++++.++..|.|||++|..+
T Consensus 123 G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~ 202 (209)
T PHA02859 123 GKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR 202 (209)
T ss_pred CCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence 99999998763 57888888888888877666544 88875 4556778888888888888888888888888887765
Q ss_pred C
Q 012683 199 G 199 (458)
Q Consensus 199 ~ 199 (458)
+
T Consensus 203 ~ 203 (209)
T PHA02859 203 N 203 (209)
T ss_pred h
Confidence 3
No 43
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.95 E-value=2.3e-27 Score=224.99 Aligned_cols=262 Identities=25% Similarity=0.343 Sum_probs=225.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhc-CCC---chhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCC
Q 012683 15 VQQFLNAACTGNLDLLKKIAKQLDDQ-GKG---LSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDG 90 (458)
Q Consensus 15 ~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g 90 (458)
-+.+..|++.||.+.+..+++.-... +.. -.+...+..|.+|.|.||.||.+|+..+++.|++. ...++..+..|
T Consensus 4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~d~kg 82 (854)
T KOG0507|consen 4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLCDTKG 82 (854)
T ss_pred hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhhhccC
Confidence 46789999999999999999753221 111 11344566788999999999999999999999987 77888888999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHH
Q 012683 91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE 169 (458)
Q Consensus 91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~ 169 (458)
.+|||+|+.+|+.++++.|+..+..++..+..|.||||.|++.||.+++.+|+.+|.+.-..++.+ |+|..|+..|..+
T Consensus 83 ~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~ 162 (854)
T KOG0507|consen 83 ILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAE 162 (854)
T ss_pred cceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhH
Confidence 999999999999999999999998889999999999999999999999999999999986666555 9999999999999
Q ss_pred HHHHHHhcCCCC--------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHH
Q 012683 170 AVKVLLEHHANP--------NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK 241 (458)
Q Consensus 170 ~~~~Ll~~~~~~--------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~ 241 (458)
+++.|++..... ..++..+.+|+|+|+++|+.++++.|++.|.++|....--|+||.|+..|..++|++|++
T Consensus 163 Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~ 242 (854)
T KOG0507|consen 163 VVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLE 242 (854)
T ss_pred HHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHh
Confidence 999999863322 234556789999999999999999999999999998777899999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHH---cCCHHHHHhhcCCCC
Q 012683 242 AGADPNVTDEDGQKPIQVAAA---RGNREAVEILFPLTS 277 (458)
Q Consensus 242 ~g~~~~~~~~~g~t~l~~A~~---~~~~~~v~~Ll~~~~ 277 (458)
.|++...+|..|+|+|++-.. +...+++-++.....
T Consensus 243 ~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~~~~ 281 (854)
T KOG0507|consen 243 IGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKNFEQ 281 (854)
T ss_pred hccccccccccchHHHHHHHhcchhhhhhhhhhhhcccc
Confidence 999999999999999988764 344567766665554
No 44
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.95 E-value=3.1e-27 Score=191.84 Aligned_cols=248 Identities=25% Similarity=0.347 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
.....++.++..|-.+.-+.+...+ ....+..|.+.+-.+...|+.+++.....-.+.-++..+.+|++
T Consensus 30 ~q~a~~~~~~~m~~t~p~~~l~~~~-----------s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~ 98 (296)
T KOG0502|consen 30 TQIAELFEQVEMGTTEPRCALTAEI-----------SALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWS 98 (296)
T ss_pred HHHHHHHHHhhccccchhHHHHHHH-----------HHHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhh
Confidence 3566788899998888888887653 34566788888999999999998887776545556667778999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHH
Q 012683 93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAV 171 (458)
Q Consensus 93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~ 171 (458)
+++.++-.|+...+..++.+|...+..+..+++|+.+++...+++.+..+.++- ++..++.+ |||.||+..|++.++
T Consensus 99 ~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~--VN~~De~GfTpLiWAaa~G~i~vV 176 (296)
T KOG0502|consen 99 ALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK--VNACDEFGFTPLIWAAAKGHIPVV 176 (296)
T ss_pred hhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcc--ccCccccCchHhHHHHhcCchHHH
Confidence 999999999999999999999999999999999999999988888887777654 45555555 999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCC
Q 012683 172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250 (458)
Q Consensus 172 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~ 250 (458)
++|++.|++++.......++|++|+..|..++|++|++++.|+|.. .+|-|||-+|++.||.++|+.|++.|++++..+
T Consensus 177 ~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~ 256 (296)
T KOG0502|consen 177 QFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQED 256 (296)
T ss_pred HHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCccccc
Confidence 9999999999999999999999999999999999999999999988 789999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHhhcC
Q 012683 251 EDGQKPIQVAAARGNREAVEILFP 274 (458)
Q Consensus 251 ~~g~t~l~~A~~~~~~~~v~~Ll~ 274 (458)
..|.+++++|...|+. +|+..++
T Consensus 257 dsGy~~mdlAValGyr-~Vqqvie 279 (296)
T KOG0502|consen 257 DSGYWIMDLAVALGYR-IVQQVIE 279 (296)
T ss_pred ccCCcHHHHHHHhhhH-HHHHHHH
Confidence 9999999999999998 6766664
No 45
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.94 E-value=1.4e-27 Score=193.80 Aligned_cols=229 Identities=24% Similarity=0.302 Sum_probs=204.3
Q ss_pred HHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 012683 18 FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA 97 (458)
Q Consensus 18 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A 97 (458)
+--++..|+.+.+.....- .+.-....++.|.++++.++-+|+.+.+..++.. +...|..+--+++|+.++
T Consensus 66 ~~~~~~s~nsd~~v~s~~~--------~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN-~~rgnevs~~p~s~~sls 136 (296)
T KOG0502|consen 66 LTVAVRSGNSDVAVQSAQL--------DPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTN-GARGNEVSLMPWSPLSLS 136 (296)
T ss_pred cchhhhcCCcHHHHHhhcc--------CCCCCCCCCchhhhhhhhcCCCCCcceeeeeecc-cccCCccccccCChhhHH
Confidence 4456778888888777653 3334456777899999999999999999999988 889999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHh
Q 012683 98 ARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLE 176 (458)
Q Consensus 98 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~ 176 (458)
+...|.+.+..+.++ .+|..|+.|.|||.+|+..|++.++++|++.|++++....+. ++|.+|++.|..+++++|+.
T Consensus 137 Vhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~ 214 (296)
T KOG0502|consen 137 VHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLT 214 (296)
T ss_pred HHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHh
Confidence 999999888887765 577889999999999999999999999999999998776665 99999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCc
Q 012683 177 HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQK 255 (458)
Q Consensus 177 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t 255 (458)
++.|+|..|.+|-|||.+|+..|+.++++.|++.|++++.. ..|++++..|+..|+- +|+..+++-+.+..+|+.-+|
T Consensus 215 r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~ 293 (296)
T KOG0502|consen 215 REVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRT 293 (296)
T ss_pred cCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999999999988 7899999999999998 899999887777778877777
Q ss_pred HHH
Q 012683 256 PIQ 258 (458)
Q Consensus 256 ~l~ 258 (458)
|+|
T Consensus 294 ~~~ 296 (296)
T KOG0502|consen 294 PLH 296 (296)
T ss_pred CCC
Confidence 764
No 46
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.93 E-value=4.2e-25 Score=229.06 Aligned_cols=217 Identities=24% Similarity=0.241 Sum_probs=179.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHh-CCCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLL-HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG 132 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 132 (458)
.+...++.|+..|+.+.++.+++. .+.++|..|..|.|||| .|+.+++.+++++|++.|. .+..|.||||.|+.
T Consensus 16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~ 91 (743)
T TIGR00870 16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL 91 (743)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence 567899999999999999999975 26788888999999999 8999999999999999987 56789999999987
Q ss_pred cC---CHHHHHHHHhCCCCC------C-----CCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCC-------------
Q 012683 133 IG---NIELLTYLLSKGAEV------D-----SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAET------------- 185 (458)
Q Consensus 133 ~~---~~~~~~~Ll~~~~~~------~-----~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~------------- 185 (458)
.+ ...++..+...+.+. + ....+.||||+|+.+|+.+++++|+++|++++..+
T Consensus 92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~ 171 (743)
T TIGR00870 92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS 171 (743)
T ss_pred ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence 32 223444444444221 0 11234499999999999999999999999998653
Q ss_pred -CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcC---------cHHHHHHHHHcCCCC-------C
Q 012683 186 -EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIG---------STEIIKCLLKAGADP-------N 247 (458)
Q Consensus 186 -~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~---------~~~iv~~Ll~~g~~~-------~ 247 (458)
..|.||||.|+..|+.+++++|+++|++++.. ..|+||||+|+..+ ...+.+++++.+... +
T Consensus 172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~ 251 (743)
T TIGR00870 172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV 251 (743)
T ss_pred ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhh
Confidence 35899999999999999999999999999987 67999999999987 234566666655443 6
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683 248 VTDEDGQKPIQVAAARGNREAVEILFPL 275 (458)
Q Consensus 248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 275 (458)
..|.+|.||||+|+..|+.+++++|++.
T Consensus 252 i~N~~g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 252 ILNHQGLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred hcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence 7799999999999999999999999984
No 47
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.93 E-value=7.1e-25 Score=227.37 Aligned_cols=240 Identities=23% Similarity=0.178 Sum_probs=187.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHH-HHHHcCCHHHHHHHHHhCCCCCCCCCCC
Q 012683 11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALH-FAAREGKTDVCKYLLEELKLDVDTQDED 89 (458)
Q Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~ll~~~~~~~~~~~~~ 89 (458)
..+....|+.||..||.+.++.+++... ....+..|..|.|||| .|+..++.++++.|++. |. .+..
T Consensus 14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~-------~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~----~~~~ 81 (743)
T TIGR00870 14 LSDEEKAFLPAAERGDLASVYRDLEEPK-------KLNINCPDRLGRSALFVAAIENENLELTELLLNL-SC----RGAV 81 (743)
T ss_pred CCHHHHHHHHHHHcCCHHHHHHHhcccc-------ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC-CC----CCCc
Confidence 3577899999999999999999987521 2234567889999999 88899999999999987 54 6778
Q ss_pred CCcHHHHHHHcC---CHHHHHHHHHcCCC------C----CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC---
Q 012683 90 GETPLLHAARQG---HTETAKYLFEHGAN------P----TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES--- 153 (458)
Q Consensus 90 g~t~L~~A~~~g---~~~~v~~Ll~~~~~------~----~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~--- 153 (458)
|.||||.|+.++ ...++..+...+.+ + ...+..|.||||+|+..|+.+++++|+++|++++...
T Consensus 82 G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~ 161 (743)
T TIGR00870 82 GDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGD 161 (743)
T ss_pred ChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCc
Confidence 999999999732 23344444444322 1 1123469999999999999999999999999987532
Q ss_pred ------------CCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC---------CHHHHHHHHHcCC
Q 012683 154 ------------DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG---------SLTCLDLLIQAGA 212 (458)
Q Consensus 154 ------------~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~---------~~~~~~~Ll~~g~ 212 (458)
.+.||||.|+..|+.+++++|+++|+|++..|..|+||||+|+..+ ...+.+.+++.+.
T Consensus 162 ~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~ 241 (743)
T TIGR00870 162 FFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLD 241 (743)
T ss_pred hhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 2349999999999999999999999999999999999999999987 2335566666554
Q ss_pred Cc-------ccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683 213 NA-------NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262 (458)
Q Consensus 213 ~~-------~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~ 262 (458)
.. +.. .+|.||||+|+..|+.+++++|++.+.+.......+..|.+++..
T Consensus 242 ~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~~ 299 (743)
T TIGR00870 242 KLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSLY 299 (743)
T ss_pred ccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHhhh
Confidence 43 323 579999999999999999999998665555555556666665543
No 48
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.93 E-value=5e-24 Score=222.12 Aligned_cols=173 Identities=27% Similarity=0.355 Sum_probs=104.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 134 (458)
++.++||.||..|+.++++.|++. |++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..|
T Consensus 524 ~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g 602 (823)
T PLN03192 524 NMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK 602 (823)
T ss_pred cchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence 445666666666666666666655 6666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 012683 135 NIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214 (458)
Q Consensus 135 ~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~ 214 (458)
+.+++++|++.+...+. ..+.++||.|+..|+.++++.|+++|+++
T Consensus 603 ~~~iv~~L~~~~~~~~~----------------------------------~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi 648 (823)
T PLN03192 603 HHKIFRILYHFASISDP----------------------------------HAAGDLLCTAAKRNDLTAMKELLKQGLNV 648 (823)
T ss_pred CHHHHHHHHhcCcccCc----------------------------------ccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence 66666666654433221 22345555555555555555555555555
Q ss_pred ccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHH
Q 012683 215 NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG-QKPIQVAAA 262 (458)
Q Consensus 215 ~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g-~t~l~~A~~ 262 (458)
+.. .+|.||||+|+..|+.+++++|+++|++++..|..| .||.+++..
T Consensus 649 n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~ 698 (823)
T PLN03192 649 DSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELREL 698 (823)
T ss_pred CCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence 554 456666666666666666666666666666666655 666665544
No 49
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.92 E-value=7e-24 Score=221.00 Aligned_cols=189 Identities=25% Similarity=0.260 Sum_probs=152.5
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCC
Q 012683 102 HTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN 180 (458)
Q Consensus 102 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~ 180 (458)
..++-..+.+.+.. ..+..+.++|+.|+..|+.++++.|++.|++++..+..+ ||||+|+..|+.+++++|+++|++
T Consensus 506 ~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad 583 (823)
T PLN03192 506 DLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN 583 (823)
T ss_pred cccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC
Confidence 33444555555443 223346677888888888888888888888887766555 888888888888888888888899
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260 (458)
Q Consensus 181 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A 260 (458)
++..|.+|+||||.|+..|+.+++++|++.++..+. ..+.++||.|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 584 in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~-~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A 662 (823)
T PLN03192 584 VHIRDANGNTALWNAISAKHHKIFRILYHFASISDP-HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA 662 (823)
T ss_pred CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc-ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999999987765543 4577999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHH
Q 012683 261 AARGNREAVEILFPLTSEDPSIPKWTVDGILEY 293 (458)
Q Consensus 261 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 293 (458)
+..|+.+++++|++++++....+.....++...
T Consensus 663 ~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l 695 (823)
T PLN03192 663 MAEDHVDMVRLLIMNGADVDKANTDDDFSPTEL 695 (823)
T ss_pred HHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence 999999999999999887655444443444433
No 50
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.91 E-value=6e-25 Score=215.05 Aligned_cols=260 Identities=26% Similarity=0.355 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
.+..+|+.|+-.|+...|+.|+.. ...+....|.+++|+|-+||..|+.++|+.||.. |++-..++....|
T Consensus 789 kgf~plImaatagh~tvV~~llk~--------ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~-gankehrnvsDyt 859 (2131)
T KOG4369|consen 789 KGFVPLIMAATAGHITVVQDLLKA--------HADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA-GANKEHRNVSDYT 859 (2131)
T ss_pred ccchhhhhhcccCchHHHHHHHhh--------hhhhhhhcccccCceEEEecCCCcchHHHHHHHh-hccccccchhhcC
Confidence 344444444444444444444443 1122333455566666666666666666666655 5555555555566
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC--CcHHHHHHhCCCH
Q 012683 93 PLLHAARQGHTETAKYLFEHGANPTIP--SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA--GTPLIWAAGHGQQ 168 (458)
Q Consensus 93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--~t~l~~A~~~~~~ 168 (458)
||-+|...|.++||..|+..|..++.+ ++.|.+||++|..+||....+.|++.|.++|..... +|.|-+|+..|..
T Consensus 860 Plsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~ 939 (2131)
T KOG4369|consen 860 PLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP 939 (2131)
T ss_pred chhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc
Confidence 666666666666666666666555433 345666666666666666666666666666543332 2666666666667
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc---CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 012683 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV---AGGATPLHIAADIGSTEIIKCLLKAGAD 245 (458)
Q Consensus 169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---~~g~t~L~~A~~~~~~~iv~~Ll~~g~~ 245 (458)
+++.+|+.+.+.+..+...|-|||+.++..|.+++=++|+..|+|+|.. ....|+|-+++..||...|+.|+...+.
T Consensus 940 evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at 1019 (2131)
T KOG4369|consen 940 EVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT 1019 (2131)
T ss_pred hHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc
Confidence 7777777766666667777888888888888888888888888888866 4456778888888888888888887778
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCC
Q 012683 246 PNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPS 281 (458)
Q Consensus 246 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~ 281 (458)
++.+|+.|.|+|-+|+..|++..+.+|+++..+...
T Consensus 1020 v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~ 1055 (2131)
T KOG4369|consen 1020 VRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQ 1055 (2131)
T ss_pred eecccCCCCcccchhccCCccccchHHhhcccChhh
Confidence 888888888888888888888888888888765443
No 51
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-23 Score=198.60 Aligned_cols=236 Identities=30% Similarity=0.343 Sum_probs=204.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCC------------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 012683 58 GALHFAAREGKTDVCKYLLEELK------------LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGAT 125 (458)
Q Consensus 58 t~L~~A~~~g~~~~v~~ll~~~~------------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t 125 (458)
+-|--|+..|+++.+..+++..+ ..++..|.+|.|+||.|+.+|+.+++++|++..+-++..+..|.+
T Consensus 5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~ 84 (854)
T KOG0507|consen 5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL 84 (854)
T ss_pred hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence 45778999999999999998632 345667889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 012683 126 ALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204 (458)
Q Consensus 126 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 204 (458)
|||+|+..|+.++++.++.++..++.....+ ||||.|+..|+.+++.+|+++|.+.-..+..+.|++..|+..|..+++
T Consensus 85 plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vv 164 (854)
T KOG0507|consen 85 PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVV 164 (854)
T ss_pred eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHH
Confidence 9999999999999999999997777666555 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcccc---------CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683 205 DLLIQAGANANIV---------AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL 275 (458)
Q Consensus 205 ~~Ll~~g~~~~~~---------~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 275 (458)
+.|++...++... ..+.+|||+|+.+||.++++.|++.|.++|.....| |+||.|+..|..++|.+|++.
T Consensus 165 q~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~ 243 (854)
T KOG0507|consen 165 QMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEI 243 (854)
T ss_pred HHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhh
Confidence 9999873332211 347789999999999999999999999999887655 899999999999999999987
Q ss_pred CCCCCCCCCcchhhHHHHHH
Q 012683 276 TSEDPSIPKWTVDGILEYMQ 295 (458)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~ 295 (458)
+- ...+.+...++.+..+.
T Consensus 244 gi-n~h~~n~~~qtaldil~ 262 (854)
T KOG0507|consen 244 GI-NTHIKNQHGQTALDIII 262 (854)
T ss_pred cc-ccccccccchHHHHHHH
Confidence 64 33445555555555443
No 52
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=183.65 Aligned_cols=180 Identities=26% Similarity=0.378 Sum_probs=142.1
Q ss_pred CHHHHHHHHHhCC--------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683 68 KTDVCKYLLEELK--------LDVDTQDEDGETPLLHAARQGHTETAKYLFEHG-ANPTIPSNLGATALHHSAGIGNIEL 138 (458)
Q Consensus 68 ~~~~v~~ll~~~~--------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~ 138 (458)
+.+.|+..+..++ .-+|..|.+|+|+||+|+.++++++|+.||+.| ++++..|..|.||+++++-..-
T Consensus 238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~l--- 314 (452)
T KOG0514|consen 238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKL--- 314 (452)
T ss_pred CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhh---
Confidence 4555554444322 236788899999999999999999999999988 7899999999999998874210
Q ss_pred HHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 012683 139 LTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE-TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV 217 (458)
Q Consensus 139 ~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~ 217 (458)
-...+..+|.-|...| ++|.+ ...|.|+|++|+..|+.++|+.||..|+|+|+.
T Consensus 315 ------------------------k~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQ 369 (452)
T KOG0514|consen 315 ------------------------KQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQ 369 (452)
T ss_pred ------------------------cchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccc
Confidence 0011334455555443 45554 345889999999999999999999999999988
Q ss_pred -CCCCcHHHHHHhcCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683 218 -AGGATPLHIAADIGSTEIIKCLLKA-GADPNVTDEDGQKPIQVAAARGNREAVEILFPL 275 (458)
Q Consensus 218 -~~g~t~L~~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 275 (458)
.+|-|+|+.||++||.+||++||.. ++|+..+|.+|.|+|.+|...||.+|.-+|..+
T Consensus 370 DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 370 DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH 429 (452)
T ss_pred cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence 7899999999999999999999964 789999999999999999999999999888644
No 53
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.90 E-value=3e-24 Score=210.23 Aligned_cols=297 Identities=25% Similarity=0.301 Sum_probs=235.5
Q ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC-C
Q 012683 9 LAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-D 87 (458)
Q Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~ 87 (458)
+..+..-+.|..||..|+.|.|+.|+.. |+++ ..+|..|.+||.+|+-.||..+|..|+.. .++++.. |
T Consensus 752 ~Te~n~~t~LT~acaggh~e~vellv~r----gani-----ehrdkkgf~plImaatagh~tvV~~llk~-ha~veaQsd 821 (2131)
T KOG4369|consen 752 LTEPNIKTNLTSACAGGHREEVELLVVR----GANI-----EHRDKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSD 821 (2131)
T ss_pred ccCccccccccccccCccHHHHHHHHHh----cccc-----cccccccchhhhhhcccCchHHHHHHHhh-hhhhhhhcc
Confidence 3344555678889999999999888876 3333 56788899999999999999999998887 7777654 6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC---cHHHHHHh
Q 012683 88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG---TPLIWAAG 164 (458)
Q Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~---t~l~~A~~ 164 (458)
..+.|+|-+||..|..++|++||..|++-..++....|||.+|...|..++++.|+..|..++.+.... +||++|..
T Consensus 822 rtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatm 901 (2131)
T KOG4369|consen 822 RTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATM 901 (2131)
T ss_pred cccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhh
Confidence 788899999999999999999999998888888888899999999999999999999998887655332 88999999
Q ss_pred CCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHc
Q 012683 165 HGQQEAVKVLLEHHANPNAE-TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKA 242 (458)
Q Consensus 165 ~~~~~~~~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~ 242 (458)
+|+...++.|++.|.|+|.. ..+.+|.|-+|+..|..+++.+||...+.+..+ ..|.|||+-++..|.+++-++|+..
T Consensus 902 ngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~ 981 (2131)
T KOG4369|consen 902 NGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAA 981 (2131)
T ss_pred ccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhc
Confidence 99999999999999888865 456778899999999999999999988888887 7789999999999999999999999
Q ss_pred CCCCCCC--CCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCCC
Q 012683 243 GADPNVT--DEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKA 318 (458)
Q Consensus 243 g~~~~~~--~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (458)
|+|.+.. .....|+|.+++..||...|..|+.- .....+++..+. +.+..+..+..+.....+++.+++.+..
T Consensus 982 gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~-~atv~v~NkkG~--T~Lwla~~Gg~lss~~il~~~~ad~d~q 1056 (2131)
T KOG4369|consen 982 GADTNASPVPNTWDTALTIPANKGHTKFVPKLLNG-DATVRVPNKKGC--TVLWLASAGGALSSCPILVSSVADADQQ 1056 (2131)
T ss_pred ccccccCCCCCcCCccceeecCCCchhhhHHhhCC-ccceecccCCCC--cccchhccCCccccchHHhhcccChhhh
Confidence 9887642 33445788889999999999888853 333344444443 4444555556777777888887776644
No 54
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2.9e-23 Score=190.76 Aligned_cols=229 Identities=29% Similarity=0.427 Sum_probs=180.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683 15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL 94 (458)
Q Consensus 15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L 94 (458)
.-.+..|+..||.+-|+.++... ++ .+..+.+|.|+||.+|...+.+||++|++. |++|+..|..|||||
T Consensus 41 sa~~l~A~~~~d~~ev~~ll~~g----a~-----~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPl 110 (527)
T KOG0505|consen 41 SAVFLEACSRGDLEEVRKLLNRG----AS-----PNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPL 110 (527)
T ss_pred hHHHHhccccccHHHHHHHhccC----CC-----ccccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcc
Confidence 34578899999999999998762 22 267788999999999999999999999997 999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC--cHHHHHHhCCCHHHH
Q 012683 95 LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG--TPLIWAAGHGQQEAV 171 (458)
Q Consensus 95 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~--t~l~~A~~~~~~~~~ 171 (458)
|.|+..||..++++|+++|+++...|..|..|..++......+++..-.. .|.+++...... +.| .++-
T Consensus 111 haaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml--------~D~~ 182 (527)
T KOG0505|consen 111 HAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTML--------DDAR 182 (527)
T ss_pred hhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHH--------HHHH
Confidence 99999999999999999999988888888888887776555555544443 233321110000 111 1223
Q ss_pred HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCC
Q 012683 172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250 (458)
Q Consensus 172 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~ 250 (458)
.+ +..|...+..+..|.|.||.|+.+|..++.++|++.|.+++.. .+|.||||.|+..|+.+++++|+++|++.+...
T Consensus 183 q~-l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t 261 (527)
T KOG0505|consen 183 QW-LNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKT 261 (527)
T ss_pred HH-HhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhh
Confidence 33 3477777877777999999999999999999999999998888 679999999999999999999999999999999
Q ss_pred CCCCcHHHHHHH
Q 012683 251 EDGQKPIQVAAA 262 (458)
Q Consensus 251 ~~g~t~l~~A~~ 262 (458)
..|.||+++|..
T Consensus 262 ~~g~~p~dv~de 273 (527)
T KOG0505|consen 262 KMGETPLDVADE 273 (527)
T ss_pred hcCCCCccchhh
Confidence 999999988753
No 55
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.88 E-value=3.3e-22 Score=174.69 Aligned_cols=184 Identities=29% Similarity=0.424 Sum_probs=128.5
Q ss_pred CChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc----
Q 012683 25 GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQ---- 100 (458)
Q Consensus 25 g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~---- 100 (458)
-+.++|+..+..+...+..+-.-+.++.|.+|+|+||||+.++++++|+.||+..-++++..|..|.||+++++..
T Consensus 237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~ 316 (452)
T KOG0514|consen 237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQ 316 (452)
T ss_pred CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcc
Confidence 3578899999888887777778888999999999999999999999999999996689999999999999998864
Q ss_pred -CCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcC
Q 012683 101 -GHTETAKYLFEHGANPTIP-SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH 178 (458)
Q Consensus 101 -g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~ 178 (458)
.+.++|..|.+.| ++|.+ ...|.|+ |++|+.+|+.++++.|+..|
T Consensus 317 ~~d~~vV~~LF~mg-nVNaKAsQ~gQTA--------------------------------LMLAVSHGr~d~vk~LLacg 363 (452)
T KOG0514|consen 317 PADRTVVERLFKMG-DVNAKASQHGQTA--------------------------------LMLAVSHGRVDMVKALLACG 363 (452)
T ss_pred hhhHHHHHHHHhcc-Ccchhhhhhcchh--------------------------------hhhhhhcCcHHHHHHHHHcc
Confidence 3566677776654 33332 2234444 55555555555555555555
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCcHHHHHHhcCcHHHHHHHHH
Q 012683 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQA-GANANIV-AGGATPLHIAADIGSTEIIKCLLK 241 (458)
Q Consensus 179 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~ 241 (458)
+|+|.+|.+|.|+|++|+..|+.+++++||.. ++++... .+|-|+|.+|...||-+|.-+|..
T Consensus 364 AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa 428 (452)
T KOG0514|consen 364 ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYA 428 (452)
T ss_pred CCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence 55555666666666666666666666555532 4555444 456666666666666666655553
No 56
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=9.6e-22 Score=169.61 Aligned_cols=125 Identities=34% Similarity=0.509 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
+....++.++.+|+.+.+.++|.+|+..|++||+++|+++..|.|||.+|.++|+|+.|+++|+.|+++||.+.++|-++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
|.+|..+|+|++|++.|++||.++|+++.++.+|..+..+++...
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999988877655
No 57
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.4e-21 Score=179.81 Aligned_cols=213 Identities=30% Similarity=0.399 Sum_probs=173.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683 59 ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138 (458)
Q Consensus 59 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 138 (458)
.+.-|+..|+.+-|+.|+.. |+.++..|.+|.|+||-+|.-.+.+||++|+++|++++..|..|+||||.|+..|++.+
T Consensus 43 ~~l~A~~~~d~~ev~~ll~~-ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i 121 (527)
T KOG0505|consen 43 VFLEACSRGDLEEVRKLLNR-GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI 121 (527)
T ss_pred HHHhccccccHHHHHHHhcc-CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence 46778899999999999987 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCC-CCCcHHHHHHhCCCHHHHHHHHh-cCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 012683 139 LTYLLSKGAEVDSES-DAGTPLIWAAGHGQQEAVKVLLE-HHANPNAE-TEDNITPLLSAVAAGSLTCLDLLIQAGANAN 215 (458)
Q Consensus 139 ~~~Ll~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 215 (458)
+++|++.|+++...+ .++.|..++...-..+++..-.. .|++++.- .....+-|+ ++-.|+ ..|.+.+
T Consensus 122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~--------D~~q~l-~~G~~~d 192 (527)
T KOG0505|consen 122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLD--------DARQWL-NAGAELD 192 (527)
T ss_pred HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHH--------HHHHHH-hcccccc
Confidence 999999999886544 44478777665555555444333 23332110 000111111 233344 4788877
Q ss_pred cc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCC
Q 012683 216 IV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPS 281 (458)
Q Consensus 216 ~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~ 281 (458)
+. ..|-|+||+|+-+|..++.++|++.|.+++.+|.+||||||.|+..|+.++.++|++++.....
T Consensus 193 ~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~ 259 (527)
T KOG0505|consen 193 ARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA 259 (527)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence 77 4499999999999999999999999999999999999999999999999999999999886544
No 58
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.86 E-value=6.4e-21 Score=159.55 Aligned_cols=81 Identities=21% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHhcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q 012683 172 KVLLEHHANPNAET-EDNITPLLSAVAAGSLTCLDLLIQ-AGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNV 248 (458)
Q Consensus 172 ~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~ 248 (458)
++|++.|++++.++ ..|.||||+|+..|+.+++++|++ .|++++.. ..|.||||+|+..++.+++++|+++|++++.
T Consensus 77 ~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~ 156 (166)
T PHA02743 77 ELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDD 156 (166)
T ss_pred HHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 34444444444433 234444444444444444444442 34444433 3344444444444444444444444444444
Q ss_pred CCCC
Q 012683 249 TDED 252 (458)
Q Consensus 249 ~~~~ 252 (458)
++..
T Consensus 157 ~~~~ 160 (166)
T PHA02743 157 PLSI 160 (166)
T ss_pred cccC
Confidence 4433
No 59
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.86 E-value=1.5e-20 Score=157.31 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=102.9
Q ss_pred cccCCCcHHHHHHHcCCH----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH---HHHHHHcCCCCCCCC-CCC
Q 012683 52 KDANKRGALHFAAREGKT----DVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTET---AKYLFEHGANPTIPS-NLG 123 (458)
Q Consensus 52 ~~~~g~t~L~~A~~~g~~----~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---v~~Ll~~~~~~~~~~-~~g 123 (458)
.+.++.++||.||+.|++ +++++|++. +..++..|..|+||||+|+..|+.++ +++|++.|++++.++ ..|
T Consensus 16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g 94 (166)
T PHA02743 16 IDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTG 94 (166)
T ss_pred hccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCC
Confidence 445677788888888887 445555554 77778888888888888888877544 778888888888877 478
Q ss_pred CcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCC
Q 012683 124 ATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNI 189 (458)
Q Consensus 124 ~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 189 (458)
.||||+|+..++.+++++|+. .|++++..+..+ ||||+|+..++.+++++|+++|++++.++..|.
T Consensus 95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 162 (166)
T PHA02743 95 NTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL 162 (166)
T ss_pred CcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence 888888888888888888884 677776655444 788888877777888888877777777666553
No 60
>PHA02741 hypothetical protein; Provisional
Probab=99.85 E-value=2.1e-20 Score=157.25 Aligned_cols=130 Identities=23% Similarity=0.248 Sum_probs=99.2
Q ss_pred hhcccCCCcHHHHHHHcCCHHHHHHHHHh-----CCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCC
Q 012683 50 DIKDANKRGALHFAAREGKTDVCKYLLEE-----LKLDVDTQDEDGETPLLHAARQGH----TETAKYLFEHGANPTIPS 120 (458)
Q Consensus 50 ~~~~~~g~t~L~~A~~~g~~~~v~~ll~~-----~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~ 120 (458)
+.++..|.||||+|+..|+.++++.|+.. .|.+++.+|..|+||||+|+..|+ .+++++|++.|++++.++
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 34567888889998888888888887542 256778888888888888888887 477888888888888777
Q ss_pred C-CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCC
Q 012683 121 N-LGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179 (458)
Q Consensus 121 ~-~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~ 179 (458)
. .|.||||+|+..++.+++++|+. .|++++..+..+ ||||+|+..++.+++++|++.+.
T Consensus 95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~ 156 (169)
T PHA02741 95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA 156 (169)
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 4 78888888888888888888876 477766555444 77777777777777777776643
No 61
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.84 E-value=5.9e-20 Score=165.36 Aligned_cols=153 Identities=22% Similarity=0.210 Sum_probs=107.8
Q ss_pred CCCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-C-CCCc
Q 012683 85 TQDEDGET-PLLHAARQGHTETAKYLFEHGANPTIP----SNLGATALHHSAGIGNIELLTYLLSKGAEVDSE-S-DAGT 157 (458)
Q Consensus 85 ~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~-~~~t 157 (458)
.+|..|.| +||.|+..|+.+++++|+++|++++.. +..|.||||+|+..++.+++++|+++|++++.. + .+.|
T Consensus 27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T 106 (300)
T PHA02884 27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT 106 (300)
T ss_pred ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence 44555554 456666677888888888888888776 347888888888888888888888888877763 2 2447
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHH
Q 012683 158 PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237 (458)
Q Consensus 158 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~ 237 (458)
|||+|+..++.+++++|+.+|++++..+..|.||||+|+..++..++..+...+ ....+.+|++++ ++.++++
T Consensus 107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~n~ei~~ 179 (300)
T PHA02884 107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE----ISNFYKHPKKIL---INFDILK 179 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc----ccccccChhhhh---ccHHHHH
Confidence 888888888888888888888888887778888888887777777665554222 123356666654 3677777
Q ss_pred HHHHcCC
Q 012683 238 CLLKAGA 244 (458)
Q Consensus 238 ~Ll~~g~ 244 (458)
+|+.+++
T Consensus 180 ~Lish~v 186 (300)
T PHA02884 180 ILVSHFI 186 (300)
T ss_pred HHHHHHH
Confidence 7777654
No 62
>PHA02741 hypothetical protein; Provisional
Probab=99.83 E-value=1.1e-19 Score=153.00 Aligned_cols=129 Identities=20% Similarity=0.275 Sum_probs=91.2
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCCCC
Q 012683 84 DTQDEDGETPLLHAARQGHTETAKYLFE------HGANPTIPSNLGATALHHSAGIGN----IELLTYLLSKGAEVDSES 153 (458)
Q Consensus 84 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~ 153 (458)
+.++..|.||||+|+..|+.++++.|+. .|++++..|..|.||||+|+..|+ .+++++|++.|++++..+
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 4567788999999999999999988754 357778888888888888888877 466677777776666544
Q ss_pred --CCCcHHHHHHhCCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683 154 --DAGTPLIWAAGHGQQEAVKVLLE-HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA 212 (458)
Q Consensus 154 --~~~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~ 212 (458)
.+.||||+|+..++.+++++|+. .|++++..+.+|.||||.|+..++.+++++|++.++
T Consensus 95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~ 156 (169)
T PHA02741 95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA 156 (169)
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 33466666666666666666665 466666666666666666666666666666665543
No 63
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.82 E-value=4e-19 Score=160.02 Aligned_cols=153 Identities=20% Similarity=0.138 Sum_probs=130.4
Q ss_pred hcccCCCc-HHHHHHHcCCHHHHHHHHHhCCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCC
Q 012683 51 IKDANKRG-ALHFAAREGKTDVCKYLLEELKLDVDTQD----EDGETPLLHAARQGHTETAKYLFEHGANPTIP-SNLGA 124 (458)
Q Consensus 51 ~~~~~g~t-~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~ 124 (458)
.+|..|.| +||.|+..|+.+++++|++. |++++..+ ..|.||||+|+..|+.+++++|+++|++++.. +..|.
T Consensus 27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~ 105 (300)
T PHA02884 27 KKNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI 105 (300)
T ss_pred ccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence 35555555 67777888999999999998 99999874 58999999999999999999999999999986 56899
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203 (458)
Q Consensus 125 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 203 (458)
||||.|+..++.+++++|+..|++++..+..+ ||||+|+..++.+++..+...+ .+..+.+|.+.. ++.++
T Consensus 106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~n~ei 177 (300)
T PHA02884 106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE-----ISNFYKHPKKIL---INFDI 177 (300)
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-----ccccccChhhhh---ccHHH
Confidence 99999999999999999999999999877666 9999999999988876665322 355567787764 47899
Q ss_pred HHHHHHcCC
Q 012683 204 LDLLIQAGA 212 (458)
Q Consensus 204 ~~~Ll~~g~ 212 (458)
++.|++++.
T Consensus 178 ~~~Lish~v 186 (300)
T PHA02884 178 LKILVSHFI 186 (300)
T ss_pred HHHHHHHHH
Confidence 999999887
No 64
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.81 E-value=2e-19 Score=149.31 Aligned_cols=131 Identities=24% Similarity=0.257 Sum_probs=89.6
Q ss_pred hhhcccCCCcHHHHHHHcCCHHHHHHHHHh-C-----CCCCCCCCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCCCC
Q 012683 49 ADIKDANKRGALHFAAREGKTDVCKYLLEE-L-----KLDVDTQDEDGETPLLHAARQGHT---ETAKYLFEHGANPTIP 119 (458)
Q Consensus 49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~-~-----~~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~~~~~~~~ 119 (458)
....|.+|.||||+|+..|+.. ..++.. . +..++..|..|.||||+|+..|+. +++++|++.|++++.+
T Consensus 10 ~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~ 87 (154)
T PHA02736 10 ASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK 87 (154)
T ss_pred HHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence 4556778999999999999842 222221 0 111234577888888888888876 4577888888888887
Q ss_pred C-CCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCC
Q 012683 120 S-NLGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181 (458)
Q Consensus 120 ~-~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~ 181 (458)
+ ..|.||||+|+..|+.+++++|+. .|++++..+..+ ||||+|+..|+.+++++|+++|++.
T Consensus 88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 7 478888888888877777777776 366665554433 6666666666666666666666544
No 65
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.80 E-value=1.1e-18 Score=137.00 Aligned_cols=141 Identities=32% Similarity=0.402 Sum_probs=114.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683 59 ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138 (458)
Q Consensus 59 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 138 (458)
.+.+|+..|.+..|+.|++...-.+|.+|.+|.||||-|+.+||.+||+.|+..|++.+.+...|+||||-||.=++.++
T Consensus 66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v 145 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV 145 (228)
T ss_pred HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence 46778888888888888887666788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHH-HHHHH-hcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA-VKVLL-EHHANPNAETEDNITPLLSAVAAG 199 (458)
Q Consensus 139 ~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~-~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~ 199 (458)
+.+|+++|++++....+. ||||+|+...+... +.+|+ ..+.++...+..+.|++.+|-+.+
T Consensus 146 a~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~ 209 (228)
T KOG0512|consen 146 AGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS 209 (228)
T ss_pred HHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence 888888888888777666 88888887766543 44444 456666677788889998887764
No 66
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.80 E-value=5.6e-19 Score=146.60 Aligned_cols=144 Identities=18% Similarity=0.196 Sum_probs=114.2
Q ss_pred CCchhhhhhhHH--HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHH---HHHHHH
Q 012683 2 APDASHALAVRE--RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD---VCKYLL 76 (458)
Q Consensus 2 ~~~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~---~v~~ll 76 (458)
||..+.....+. +.++||.||+.|++..+........ ...+......|.+|.||||+|+..|+.+ ++++|+
T Consensus 3 ~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~----~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll 78 (154)
T PHA02736 3 PPEEIIFASEPDIEGENILHYLCRNGGVTDLLAFKNAIS----DENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLM 78 (154)
T ss_pred ccchhhHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhc----chhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHH
Confidence 344444444443 6799999999999432211111111 1112334567889999999999999875 688888
Q ss_pred HhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 012683 77 EELKLDVDTQD-EDGETPLLHAARQGHTETAKYLFE-HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD 150 (458)
Q Consensus 77 ~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~ 150 (458)
+. |++++.++ ..|+||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.|++.+
T Consensus 79 ~~-gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 79 EW-GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred Hc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 87 99999998 589999999999999999999998 599999999999999999999999999999999998764
No 67
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.79 E-value=2.8e-18 Score=134.66 Aligned_cols=140 Identities=27% Similarity=0.303 Sum_probs=120.2
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CcHHHHHHhCCCHH
Q 012683 92 TPLLHAARQGHTETAKYLFEHGAN-PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-GTPLIWAAGHGQQE 169 (458)
Q Consensus 92 t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~t~l~~A~~~~~~~ 169 (458)
.-+..|+..+....|+.||+-.++ ++.+|.+|.||||.|+.+|+++|++.|+..|++.+..... +||||.||.-++.+
T Consensus 65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~ 144 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE 144 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence 346788889999999999987765 7899999999999999999999999999999999866654 49999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH-HHHHHHH-HcCCCcccc-CCCCcHHHHHHhcC
Q 012683 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSL-TCLDLLI-QAGANANIV-AGGATPLHIAADIG 231 (458)
Q Consensus 170 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll-~~g~~~~~~-~~g~t~L~~A~~~~ 231 (458)
++-.|+++|+|+|.......||||+++...+. ..+++|+ ..++.+... ..+.||+.+|-+.+
T Consensus 145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~ 209 (228)
T KOG0512|consen 145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS 209 (228)
T ss_pred HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence 99999999999999999999999999988765 4455554 556666655 66889999997765
No 68
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.78 E-value=1.2e-18 Score=168.48 Aligned_cols=206 Identities=28% Similarity=0.305 Sum_probs=164.1
Q ss_pred cHHHHHHHcCCHHHHHHHHHhC--------CCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCC----CC-CCCC
Q 012683 58 GALHFAAREGKTDVCKYLLEEL--------KLDVDTQDEDGETPLLHAARQ---GHTETAKYLFEHGAN----PT-IPSN 121 (458)
Q Consensus 58 t~L~~A~~~g~~~~v~~ll~~~--------~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~----~~-~~~~ 121 (458)
.++..|...|.+..+..++... ..+++.+..-|+|+||.|..+ ++.+++..|++.-.. +. ....
T Consensus 103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY 182 (782)
T KOG3676|consen 103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY 182 (782)
T ss_pred hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence 6788888888888887776652 256777788899999999974 466889999875432 11 1234
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--cHHHH-HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 012683 122 LGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIW-AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA 198 (458)
Q Consensus 122 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--t~l~~-A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~ 198 (458)
.|.||||+|+.+.+.++|++|++.|+|++..-.|. .|=.. +.+ ...+..-.-..|+.||.+|+..
T Consensus 183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~r------------k~T~Y~G~~YfGEyPLSfAAC~ 250 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASR------------KSTNYTGYFYFGEYPLSFAACT 250 (782)
T ss_pred cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccc------------cccCCcceeeeccCchHHHHHc
Confidence 69999999999999999999999999987544332 11000 000 1122222245689999999999
Q ss_pred CCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683 199 GSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD--PNVTDEDGQKPIQVAAARGNREAVEILFPL 275 (458)
Q Consensus 199 ~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 275 (458)
++.+++++|+++|+|++.. ++|+|.||..+..-..++..+++++|++ ...+|+.|-|||.+|+.-|+.+|++.+++.
T Consensus 251 nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 251 NQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred CCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 9999999999999999998 8899999999999999999999999999 889999999999999999999999999987
No 69
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.78 E-value=2.8e-18 Score=165.86 Aligned_cols=217 Identities=25% Similarity=0.290 Sum_probs=165.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCCC----CC
Q 012683 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQ----DE 88 (458)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~----~~ 88 (458)
..++.+...|++..+..+.............+..+.+...|.|+||.|..+ ++.++++.|++..+.-+|.. ..
T Consensus 103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY 182 (782)
T KOG3676|consen 103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY 182 (782)
T ss_pred hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence 778899999999888888776533211122334555678899999999983 45689999999876555543 35
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCcHHHHHHhCCC
Q 012683 89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQ 167 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~t~l~~A~~~~~ 167 (458)
.|+||||+|+.+.+.++|++|++.|+|++.+-.. . +..+-..+ -.+ ...+..- -..|..||.+|+-.++
T Consensus 183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G-~--FF~~~dqk---~~r----k~T~Y~G~~YfGEyPLSfAAC~nq 252 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACG-A--FFCPDDQK---ASR----KSTNYTGYFYFGEYPLSFAACTNQ 252 (782)
T ss_pred cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhc-c--ccCccccc---ccc----cccCCcceeeeccCchHHHHHcCC
Confidence 7999999999999999999999999998754210 0 00000000 000 1111111 1123389999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--cccc-CCCCcHHHHHHhcCcHHHHHHHHHc
Q 012683 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN--ANIV-AGGATPLHIAADIGSTEIIKCLLKA 242 (458)
Q Consensus 168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~--~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~ 242 (458)
.+|+++|+++|+|++.+|..|+|.||..+..-..++...++++|++ .... ..|-|||.+|+..|..+|++.+++.
T Consensus 253 ~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 253 PEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred HHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999 5555 6799999999999999999999986
No 70
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.73 E-value=3.6e-17 Score=122.14 Aligned_cols=88 Identities=41% Similarity=0.630 Sum_probs=77.0
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 012683 60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL 139 (458)
Q Consensus 60 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~ 139 (458)
||+||..|+++++++|++. +.+++. |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus 1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 75 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV 75 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence 7899999999999999986 777666 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCC
Q 012683 140 TYLLSKGAEVDSE 152 (458)
Q Consensus 140 ~~Ll~~~~~~~~~ 152 (458)
++|+++|++++..
T Consensus 76 ~~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 76 KLLLEHGADVNIR 88 (89)
T ss_dssp HHHHHTTT-TTSS
T ss_pred HHHHHcCCCCCCc
Confidence 9999999888754
No 71
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.72 E-value=6.2e-17 Score=120.86 Aligned_cols=80 Identities=41% Similarity=0.628 Sum_probs=35.7
Q ss_pred HHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhh
Q 012683 193 LSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272 (458)
Q Consensus 193 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 272 (458)
|+|+..|+++++++|++.+.+++. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|
T Consensus 2 ~~A~~~~~~~~~~~ll~~~~~~~~---~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 78 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLEKGADINL---GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLL 78 (89)
T ss_dssp HHHHHTTTHHHHHHHHHTTSTTTS---SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCcCCCCC---CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 444444444444444444444433 34444444444444444444444444444444444444444444444444444
Q ss_pred cCC
Q 012683 273 FPL 275 (458)
Q Consensus 273 l~~ 275 (458)
+++
T Consensus 79 l~~ 81 (89)
T PF12796_consen 79 LEH 81 (89)
T ss_dssp HHT
T ss_pred HHc
Confidence 444
No 72
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.72 E-value=1.5e-16 Score=129.53 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=111.2
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL 415 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 415 (458)
.+...|..+++.|+|++|+..|++++.++|.++.+|+++|.++.++|++++|+..|+++++++|+++.+++++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 416 EKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 416 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
|++++|+..|+++++++|+++.++..++.++..++.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876654
No 73
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.4e-16 Score=147.43 Aligned_cols=116 Identities=47% Similarity=0.779 Sum_probs=113.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
++..+..|+.+|+.|+|..|+..|++||..+|+++.+|+|||.||.+++.+..|+++++++++++|++.++|++.|.++.
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
.+.+|+.|++.|+++++++|++.++...+.+|..++
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998875
No 74
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.71 E-value=1e-17 Score=142.27 Aligned_cols=115 Identities=30% Similarity=0.395 Sum_probs=107.6
Q ss_pred hhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 012683 47 TVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA 126 (458)
Q Consensus 47 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~ 126 (458)
...+.-|..|.+|||+||+.|+..+|+.|+.+ |+.+|..|.-..||||+|+.+||-++|+.|++..+|++..+..|.||
T Consensus 25 hdln~gddhgfsplhwaakegh~aivemll~r-garvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntp 103 (448)
T KOG0195|consen 25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTP 103 (448)
T ss_pred cccccccccCcchhhhhhhcccHHHHHHHHhc-ccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCc
Confidence 34567788999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHH
Q 012683 127 LHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWA 162 (458)
Q Consensus 127 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A 162 (458)
||+||.-|.-.+++-|+..|+.++..+..+ |||..|
T Consensus 104 lhyacfwgydqiaedli~~ga~v~icnk~g~tpldka 140 (448)
T KOG0195|consen 104 LHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA 140 (448)
T ss_pred hhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence 999999999999999999999998877766 999876
No 75
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.70 E-value=7e-16 Score=123.32 Aligned_cols=121 Identities=44% Similarity=0.672 Sum_probs=78.9
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683 53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG 132 (458)
Q Consensus 53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 132 (458)
+.+|.||||+|+..|+.+++++|++. +.+.+..+..|.||||.|+..++.+++++|++.|++++..+..|.||+|.|+.
T Consensus 4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~ 82 (126)
T cd00204 4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR 82 (126)
T ss_pred CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 35567777777777777777777765 55556666677777777777777777777777776666666666677777666
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHH
Q 012683 133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174 (458)
Q Consensus 133 ~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~L 174 (458)
.++.+++++|++.+.+.+..+..+ ||++.|...++.+++++|
T Consensus 83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence 666666666666665544433333 666666666666655554
No 76
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.8e-16 Score=142.94 Aligned_cols=132 Identities=26% Similarity=0.401 Sum_probs=121.0
Q ss_pred CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---------------hhHHHhHHHHHHhhCCHHHHHHH
Q 012683 326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---------------ATLLSNRSLCWIRLGQAEHALAD 390 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~ 390 (458)
..++....+...++.|+.+|+.|+|..|+..|.+|+..-+.. ..++.|+|.|++++++|.+|+..
T Consensus 200 ~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~ 279 (397)
T KOG0543|consen 200 FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES 279 (397)
T ss_pred chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence 334678889999999999999999999999999999864421 25899999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCCC
Q 012683 391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDK 457 (458)
Q Consensus 391 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 457 (458)
|.+++.++|+|.+++|++|.++..+|+|+.|+..|+++++++|+|..+...+..+.++.+++.++++
T Consensus 280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988776654
No 77
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.69 E-value=9.6e-17 Score=136.42 Aligned_cols=114 Identities=37% Similarity=0.482 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 012683 114 ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192 (458)
Q Consensus 114 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l 192 (458)
-|.+.-|..|.+|||+|++.|+..+++.|+.+|+.++..+.+. ||||+|+..|+.++++.|++..+|+|..++.|+|||
T Consensus 25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntpl 104 (448)
T KOG0195|consen 25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPL 104 (448)
T ss_pred cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCch
Confidence 4455555666666666666666666666666666666555444 666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHH
Q 012683 193 LSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIA 227 (458)
Q Consensus 193 ~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A 227 (458)
|+||..|.-.+.+-|+..|+-+++. +.|.|||..|
T Consensus 105 hyacfwgydqiaedli~~ga~v~icnk~g~tpldka 140 (448)
T KOG0195|consen 105 HYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA 140 (448)
T ss_pred hhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence 6666666666666666666666655 5566666655
No 78
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.69 E-value=1.4e-15 Score=121.65 Aligned_cols=122 Identities=45% Similarity=0.657 Sum_probs=88.9
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHh
Q 012683 86 QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAG 164 (458)
Q Consensus 86 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~ 164 (458)
++..|.||||.|+..|+.+++++|++.+.+.+..+..|.||+|.|+..++.+++++|++.+..++..+..+ ||+|+|+.
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~ 82 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR 82 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 34667888888888888888888888887777777778888888888888888888887776555444333 77777777
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 012683 165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207 (458)
Q Consensus 165 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L 207 (458)
.++.+++++|++++.+.+..+..+.||++.|...++.+++++|
T Consensus 83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence 7777777777777766666666666777777666666666665
No 79
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=8.4e-16 Score=124.44 Aligned_cols=121 Identities=31% Similarity=0.399 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 405 (458)
...+..++..|+.+|.+|+|++|...|+.||++.|..+ -+|.|+|.|.++++.++.|+.+|.+||+++|.+-+++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 45678899999999999999999999999999999754 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 406 YREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 406 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
.++|.+|..+..|++|+++|++.+..+|...++.....++-.++..
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 9999999999999999999999999999999988887777655543
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.67 E-value=9.6e-16 Score=144.13 Aligned_cols=118 Identities=35% Similarity=0.523 Sum_probs=113.7
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..++.+|+.+|..|+|++|++.|++|++++|+++.+|+++|.++.++|++++|+.++++|++++|+++.+|+++|.+++.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
+|+|++|+..|+++++++|+++.+...++.|..++...
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998888553
No 81
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.65 E-value=8.3e-16 Score=107.57 Aligned_cols=104 Identities=25% Similarity=0.403 Sum_probs=89.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 012683 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL 95 (458)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~ 95 (458)
..+++++++|.+|-|++.+... .++ .+ ...|.+|||+|+-+|.++++++|+.. |++++.+|++|.|||.
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g----~nV----n~--~~ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLL 72 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEG----LNV----NE--IYGGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLL 72 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHcc----ccH----HH--HhCCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHH
Confidence 3578999999999999998762 111 22 23799999999999999999999998 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130 (458)
Q Consensus 96 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 130 (458)
.|+..||.+||++||++|++-.....+|.+.+..+
T Consensus 73 sAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 73 SAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT 107 (117)
T ss_pred HHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence 99999999999999999999988888887776543
No 82
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.8e-15 Score=138.28 Aligned_cols=128 Identities=30% Similarity=0.402 Sum_probs=113.7
Q ss_pred CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHH
Q 012683 326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 405 (458)
..++..+.+.+++.+|+.+|++|.|++||.+|++||+++|+.+.+|.||+.||..+|+|++.++++.+|++++|++.+++
T Consensus 107 ~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl 186 (606)
T KOG0547|consen 107 LKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKAL 186 (606)
T ss_pred ChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHH
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhcc-CCCcHHHHHHHHHHHHHhhhhh
Q 012683 406 YREGAALRLLEKFDEAANAFYEGVTL-DPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 406 ~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
++++.++..+|++.+|+.+..-..-+ .-++....-.+.++++.++...
T Consensus 187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~k 235 (606)
T KOG0547|consen 187 LRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKK 235 (606)
T ss_pred HHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999987654332 3356677777788887776544
No 83
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.64 E-value=4.5e-15 Score=118.21 Aligned_cols=119 Identities=11% Similarity=0.031 Sum_probs=108.5
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
+..+.+...|..++..|++++|...|+-.+.++|.+...|+++|.|+..+|+|.+|+..|.+|+.++|+++..+++.|.|
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccC---CCcHHHHHHHHHHHHHhh
Q 012683 412 LRLLEKFDEAANAFYEGVTLD---PENKELVFAFREAVEAGR 450 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~l~~~~~~~~ 450 (458)
+..+|+.+.|++.|+.++..- |.+...+......+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhh
Confidence 999999999999999999875 556666665555555554
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.5e-15 Score=140.67 Aligned_cols=113 Identities=42% Similarity=0.632 Sum_probs=110.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+..+..+|+..|..|+|+.|+..|+.||.++|.+..+|+||..||..+|+|++|+++..+.++++|+|+++|.++|.++.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
.+|+|++|+..|.++|+.+|+++.....+..+.
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999987
No 85
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.59 E-value=9e-15 Score=128.12 Aligned_cols=123 Identities=30% Similarity=0.351 Sum_probs=114.6
Q ss_pred CCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHH
Q 012683 325 EVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKA 404 (458)
Q Consensus 325 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 404 (458)
.+-++....+..++++|+.||++|.|++||.+|.+++..+|.++..+.|||.+|+++.+|..|..+|..|+.++-.+.++
T Consensus 88 ~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA 167 (536)
T KOG4648|consen 88 PIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA 167 (536)
T ss_pred HHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 34456677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
|-++|.+-..+|..++|.++++.+|+++|++.+....++.+..
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999999999999999888877766643
No 86
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.59 E-value=1.5e-14 Score=101.32 Aligned_cols=100 Identities=31% Similarity=0.451 Sum_probs=85.3
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 012683 126 ALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205 (458)
Q Consensus 126 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 205 (458)
-+.+++.+|.++-++.....|.+++....+.+|||+|+..|+.+++++|+..|++++.+|.+|-|||..|++.|+.++|+
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVk 84 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVK 84 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHH
Confidence 46678888999999999888888877766669999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcccc-CCCCcHHH
Q 012683 206 LLIQAGANANIV-AGGATPLH 225 (458)
Q Consensus 206 ~Ll~~g~~~~~~-~~g~t~L~ 225 (458)
+|+++|++.... .+|.+.+.
T Consensus 85 lLL~~GAdrt~~~PdG~~~~e 105 (117)
T KOG4214|consen 85 LLLQNGADRTIHAPDGTALIE 105 (117)
T ss_pred HHHHcCcccceeCCCchhHHh
Confidence 999999988877 66666553
No 87
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.57 E-value=5e-15 Score=138.98 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=84.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+.++.+.|++|-..+.|++|+.+|.+|+.+.|+++.++.|+|.+|...|..+-|+..|++|+.++|+++.+|.++|.++.
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
..|+..+|..+|.+|+.+.|+++++..+|+.++..++++++
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH
Confidence 77777777777777777777777777777777666666544
No 88
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.55 E-value=1.3e-13 Score=111.88 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=107.6
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..+......|..++..|++++|++.|++++..+|.++.+++++|.++.++|++++|+..+.++++++|+++..++.+|.+
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
+...|++++|+..|+++++++|++..+......+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 999999999999999999999999886655554443
No 89
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.54 E-value=4.6e-14 Score=120.16 Aligned_cols=120 Identities=31% Similarity=0.377 Sum_probs=112.5
Q ss_pred cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCcHHHHHHhcCcHH
Q 012683 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGSTE 234 (458)
Q Consensus 157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~ 234 (458)
+||.-++..|..+-...|++..-++|..|.+|+++|..|+..|+.+++++|++.|+|+|.. ..+.||||.|+..|+.+
T Consensus 14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d 93 (396)
T KOG1710|consen 14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD 93 (396)
T ss_pred hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence 7888899999999999999887778999999999999999999999999999999999988 56899999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 235 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
+.++|++.|+.....|.-|+|+-.+|+.-||.++|..+-.+-
T Consensus 94 vcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~ 135 (396)
T KOG1710|consen 94 VCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHI 135 (396)
T ss_pred HHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence 999999999999999999999999999999999998876553
No 90
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.53 E-value=3.7e-14 Score=133.26 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
..-+++..+.|..|-++|++++|+.+|++||++.|..+.+|.|+|..|-.+|+..+|++.|.+||+++|...+++.++|.
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 35577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
+|...|+..+|+..|+.|+++.|+.+++.-++..++.-+-++
T Consensus 465 i~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998766443
No 91
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.52 E-value=3e-13 Score=120.38 Aligned_cols=122 Identities=39% Similarity=0.534 Sum_probs=111.3
Q ss_pred CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC---Ccccc-CCCCcHHH
Q 012683 155 AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS-----LTCLDLLIQAGA---NANIV-AGGATPLH 225 (458)
Q Consensus 155 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~g~---~~~~~-~~g~t~L~ 225 (458)
..++++.++..+..+++++++..|.+++..+..|.||+|+|+..++ .++++.|++.|+ ..+.. ..|+||||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~ 152 (235)
T COG0666 73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152 (235)
T ss_pred ccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhH
Confidence 4488999999999999999999999999999999999999999999 999999999999 44442 77999999
Q ss_pred HHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 226 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
+|+..|+.+++++|++.|++++.++..|.|+++.|+..++.++++.++..+
T Consensus 153 ~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred HHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999865
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.52 E-value=1.8e-13 Score=125.97 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=103.0
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..++.++.+|..+...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+|+++|.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
++..|++++|++.|+++++.+|+++.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999874
No 93
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.51 E-value=3.6e-14 Score=94.34 Aligned_cols=54 Identities=52% Similarity=0.783 Sum_probs=45.9
Q ss_pred CCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 012683 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273 (458)
Q Consensus 220 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 273 (458)
|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 689999999999999999999999999999999999999999999999999985
No 94
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.5e-13 Score=121.17 Aligned_cols=124 Identities=34% Similarity=0.508 Sum_probs=110.1
Q ss_pred chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683 327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP 402 (458)
Q Consensus 327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 402 (458)
.-.+.+..+.+++.|+..|++|.|..|.++|+.||.++|.+ .-+|.|||.+..++|+..+|+.+++.|+.+||...
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 34556778899999999999999999999999999999985 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
++|.++|.|+..+++|++|.++|++|+++..+ .+.+..+..+...+++
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 99999999999999999999999999998766 5555555555555543
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.47 E-value=3.1e-13 Score=110.04 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=93.6
Q ss_pred HHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683 354 VDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 433 (458)
...|+++++++|++ ++.+|.++...|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|.++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35789999999886 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhhhcC
Q 012683 434 ENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 434 ~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+++.+++.++.++.++|+..++
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999988764
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=1.4e-12 Score=112.04 Aligned_cols=111 Identities=15% Similarity=0.134 Sum_probs=100.8
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHH-HhhCC--HHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCW-IRLGQ--AEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
..++.+...|..+...|++++|+..|++++++.|+++.+++++|.++ ...|+ +++|.+.++++++++|+++.+++.+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL 150 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence 34677999999999999999999999999999999999999999985 67787 5999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAF 442 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 442 (458)
|.++++.|+|++|+..|+++++++|.+..-...+
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999999999999999999988765444333
No 97
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.46 E-value=6.3e-12 Score=111.81 Aligned_cols=129 Identities=36% Similarity=0.549 Sum_probs=83.4
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHhCCC---CCCCCCC
Q 012683 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN-----IELLTYLLSKGA---EVDSESD 154 (458)
Q Consensus 83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~~~---~~~~~~~ 154 (458)
....+..+.++++.++..+..+++.+++..|++++..+..|.||||+|+..++ .++++.|++.|. ..+..+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~ 145 (235)
T COG0666 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145 (235)
T ss_pred cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence 34445567788888888888888888888888888888888888888888888 666666666666 2222222
Q ss_pred CC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012683 155 AG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG 211 (458)
Q Consensus 155 ~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 211 (458)
.+ ||||+|+..|+.+++++|++.|.+++..+..|.|+++.|+..++.+++..+++.+
T Consensus 146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 22 5555555555555555555555555555555555555555555555555555543
No 98
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=2.1e-12 Score=107.77 Aligned_cols=126 Identities=18% Similarity=0.163 Sum_probs=116.3
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
.+.+.+...+|..|++.|++..|...+++||+.+|++..+|.-||..|.+.|+.+.|-+.|++|++++|++.+++.+.|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683 411 ALRLLEKFDEAANAFYEGVTL--DPENKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
.++..|+|++|...|++|+.. .|.....+.+++.|-.+.|+++.++
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence 999999999999999999864 4456788999999999888877654
No 99
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=1.1e-12 Score=133.96 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=68.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+..+...|..++..|++++|+..|+++++++|.+...|+++|.++..+|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
..|++++|+.+|+++++++|++..++..++.++.++++++
T Consensus 411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence 5555555555555555555555555555555555544443
No 100
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.44 E-value=1.1e-13 Score=92.28 Aligned_cols=54 Identities=48% Similarity=0.807 Sum_probs=31.9
Q ss_pred HHHcC-CCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683 207 LIQAG-ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260 (458)
Q Consensus 207 Ll~~g-~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A 260 (458)
|+++| ++++.. ..|+||||+||..|+.++|++|++.|++++.+|..|+||+|+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 56777 677766 7799999999999999999999999999999999999999987
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=1.8e-12 Score=110.59 Aligned_cols=124 Identities=15% Similarity=0.192 Sum_probs=117.4
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
.+.+..+|...+..|+|.+|+..++++.++.|+++++|..+|.+|.+.|++++|...|.+|+++.|+.+..+.++|..++
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 34455599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCCC
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDK 457 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 457 (458)
-.|+++.|...+..+...-+.+..+..+++.+...++++.++++
T Consensus 180 L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 99999999999999998888899999999999999999887653
No 102
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.43 E-value=2e-12 Score=110.31 Aligned_cols=120 Identities=23% Similarity=0.314 Sum_probs=107.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC-CCCCCcH
Q 012683 15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-DEDGETP 93 (458)
Q Consensus 15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~ 93 (458)
-++|+.++-.||.+.+..|+....+ .+..|.+|.|+|..|+..|+.++|+.|++. |+|+|.. +..+.||
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs~vr~---------vn~~D~sGMs~LahAaykGnl~~v~lll~~-gaDvN~~qhg~~YTp 82 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLSTVRQ---------VNQRDPSGMSVLAHAAYKGNLTLVELLLEL-GADVNDKQHGTLYTP 82 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHHHhhh---------hhccCCCcccHHHHHHhcCcHHHHHHHHHh-CCCcCcccccccccH
Confidence 4679999999999999999986322 467899999999999999999999999997 9999864 6778999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 012683 94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS 144 (458)
Q Consensus 94 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 144 (458)
||+|+..|+.++..+|++.|+.+...|.-|+|+-..|+.-|+.++|..+-+
T Consensus 83 LmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 83 LMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred HHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence 999999999999999999999999999999999999999999999886654
No 103
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.43 E-value=1.6e-12 Score=132.76 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=115.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
...+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|++++.++|++..+++.+|.++.
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.+|++++|+..|+++++..|+++.++..++.++..+|+++++
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999999999999999998887654
No 104
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.42 E-value=4.4e-13 Score=89.06 Aligned_cols=54 Identities=46% Similarity=0.778 Sum_probs=33.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 012683 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF 110 (458)
Q Consensus 56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 110 (458)
|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+.+|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 45677777777777777777766 6666666666777777777777777776664
No 105
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=1e-12 Score=120.96 Aligned_cols=118 Identities=31% Similarity=0.355 Sum_probs=100.1
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683 58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137 (458)
Q Consensus 58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~ 137 (458)
-.|.-|+..|.+++|+.++.. --|+...|..|.|+||.|+..||.+||++|++.|+++|..|.+|+||||+|+..+++.
T Consensus 552 aLLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~ 630 (752)
T KOG0515|consen 552 ALLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP 630 (752)
T ss_pred HHHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence 346779999999999999987 5677888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCC--CCCCCcHHHHH--HhCCCHHHHHHHHh
Q 012683 138 LLTYLLSKGAEVDS--ESDAGTPLIWA--AGHGQQEAVKVLLE 176 (458)
Q Consensus 138 ~~~~Ll~~~~~~~~--~~~~~t~l~~A--~~~~~~~~~~~Ll~ 176 (458)
+++.|++.|+-+.. ..+..|+...+ ...|...|.++|..
T Consensus 631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG 673 (752)
T ss_pred HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence 99999999977642 22333666554 23567788888864
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.41 E-value=2.1e-12 Score=110.96 Aligned_cols=109 Identities=10% Similarity=0.095 Sum_probs=103.0
Q ss_pred hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhhh--HHHHHH
Q 012683 347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL-RLLEK--FDEAAN 423 (458)
Q Consensus 347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~ 423 (458)
.++.++++..++++++.+|+++..|+.+|.+|..+|++++|+..|++|++++|+++..++.+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 424 AFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 424 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.++++++.+|++..+++.++.++.+.++++++
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~A 163 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQA 163 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999988764
No 107
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=4e-13 Score=127.85 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=84.4
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
...+.|...|+.+--+++++.||++|++|+.++|...-+|..+|.=+....+|+.|...|++|+..+|.+..|||.+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 34567888888888888888888888888888887766666666666666666666666666666666666666666666
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
|.+.++++.|+-.|++|+.++|.+....-.++.++.++|+.++
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence 6666666666666666666666666666666666666655443
No 108
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.38 E-value=6.6e-12 Score=127.74 Aligned_cols=96 Identities=31% Similarity=0.400 Sum_probs=89.1
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683 58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137 (458)
Q Consensus 58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~ 137 (458)
+.|+.|+..|+.++++.|++. |++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~ 162 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE 162 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence 358899999999999999997 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-------CCCCCCCCC
Q 012683 138 LLTYLLSK-------GAEVDSESD 154 (458)
Q Consensus 138 ~~~~Ll~~-------~~~~~~~~~ 154 (458)
++++|+++ |++.+....
T Consensus 163 iv~~Ll~~~~~~~~~ga~~~~~~~ 186 (664)
T PTZ00322 163 VVQLLSRHSQCHFELGANAKPDSF 186 (664)
T ss_pred HHHHHHhCCCcccccCCCCCcccc
Confidence 99999998 666655444
No 109
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=4.2e-12 Score=127.35 Aligned_cols=123 Identities=17% Similarity=0.063 Sum_probs=113.1
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.++.+...|..+...|++++|+..|++|++++|+++.+++++|.++...|++++|+..++++++++|.++.+++.++.++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999998888888889
Q ss_pred HHhhhHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHhhhhhcC
Q 012683 413 RLLEKFDEAANAFYEGVTLD-PENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+..|++++|+..++++++.+ |+++.++..++.++..+|+.+++
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999774 78899999999999988887654
No 110
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.9e-12 Score=106.07 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCch----------hHHHhHHHHHHhhCCHHHHHHH
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDA----------TLLSNRSLCWIRLGQAEHALAD 390 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~~a~~~~~~~~~~~A~~~ 390 (458)
+..+....+.++|+.+|+.|+|++|+..|..|+.. .|.++ .++.|.++|++..|+|-++++.
T Consensus 173 eKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh 252 (329)
T KOG0545|consen 173 EKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH 252 (329)
T ss_pred HhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH
Confidence 33455678999999999999999999999999852 34443 5899999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHhhhhhcC
Q 012683 391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN-KELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 391 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~~ 455 (458)
+..++...|++.++||++|.++....+.++|..+|.++++++|.- +.....+..+..++...++.
T Consensus 253 ~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~e 318 (329)
T KOG0545|consen 253 CSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEE 318 (329)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999999999999999999999985 45566777777766555443
No 111
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=5.9e-12 Score=115.65 Aligned_cols=126 Identities=27% Similarity=0.385 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
.+.+..++++...|..+|-.|++-.|.+.|+++|.++|.....|-.||.+|....+.++-..+|.+|..+||.++..||.
T Consensus 320 ~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyH 399 (606)
T KOG0547|consen 320 AELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYH 399 (606)
T ss_pred hhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHh
Confidence 33455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
+|++++-+++|++|+.+|++++.++|++.-.+..+.-++.++.++.
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666655555555555443
No 112
>PRK15331 chaperone protein SicA; Provisional
Probab=99.37 E-value=1.4e-11 Score=98.74 Aligned_cols=121 Identities=14% Similarity=-0.017 Sum_probs=112.3
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
+..+.+...|..+++.|++++|...|+-...++|.++..|..+|.|+..+++|++|+..|..|..+++++|..+|+.|.|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
+..+|+.+.|+.+|..++. .|.+..........+..+++..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~~ 155 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKTAE 155 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHccc
Confidence 9999999999999999998 6888888887777777665543
No 113
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.9e-12 Score=116.88 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=95.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
..++--.|-.|..-.+-..|++.|++|++++|.|..+||.+|++|.-++.+.=|+-+|++|+++.|++++.|..+|.||.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE 443 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 34455566666777777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.+++.++|+++|++|+.....+..++..++.+++++++..++
T Consensus 444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 888888888888888877766777888888888888776654
No 114
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7e-12 Score=114.44 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=116.2
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
+...--|+-|.-+++-++|+.+|++|++++|....+|..+|.=|..|.+...|++.|++|+.++|.+.++||.+|++|.-
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 33455788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCCC
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDK 457 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 457 (458)
++-..=|+-+|++|+++-|+|+..|..|+.|+.++++.+++.+
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999999999998877643
No 115
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.36 E-value=1.1e-11 Score=97.86 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=100.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYR 407 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~ 407 (458)
++.++..|..++..|+|++|++.|.++++..|++ +.+++.+|.++.+.|++++|+..|++++...|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3567899999999999999999999999999876 5789999999999999999999999999999885 678999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF 442 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 442 (458)
+|.++...|++++|+..|.++++..|++..+....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99999999999999999999999999988765543
No 116
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.36 E-value=4.2e-12 Score=129.17 Aligned_cols=105 Identities=29% Similarity=0.460 Sum_probs=80.0
Q ss_pred cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHH
Q 012683 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI 235 (458)
Q Consensus 157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~i 235 (458)
+.|+.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.++
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i 163 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV 163 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence 3467777778888888888888887777777888888888888888888888888877766 567788888888888888
Q ss_pred HHHHHHc-------CCCCCCCCCCCCcHHHHHH
Q 012683 236 IKCLLKA-------GADPNVTDEDGQKPIQVAA 261 (458)
Q Consensus 236 v~~Ll~~-------g~~~~~~~~~g~t~l~~A~ 261 (458)
+++|+++ |++++..+..|.+|+..+.
T Consensus 164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 8888777 7777777777776655443
No 117
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.36 E-value=3e-12 Score=90.28 Aligned_cols=66 Identities=27% Similarity=0.381 Sum_probs=38.7
Q ss_pred hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh-hHHHHHHHHHHhhccCC
Q 012683 368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE-KFDEAANAFYEGVTLDP 433 (458)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p 433 (458)
+.+|+.+|.++...|+|++|+..|+++++++|+++.+|+++|.++..+| ++++|+++|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 55555555555555554
No 118
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.35 E-value=1.2e-12 Score=87.40 Aligned_cols=56 Identities=45% Similarity=0.666 Sum_probs=30.0
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683 75 LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130 (458)
Q Consensus 75 ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 130 (458)
||+..+.+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 45552377888888888888888888888888888888888888888888888876
No 119
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.35 E-value=1.9e-12 Score=119.46 Aligned_cols=119 Identities=30% Similarity=0.408 Sum_probs=113.4
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.++.+..+++.+|....|+.|+..|.+||+++|+++.++.+|+.++++.+.|..|+.++.+|++++|...++|+++|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
..++++.+|+..|++...+.|+++.+...+..|.....+
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988776654
No 120
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.34 E-value=2.9e-12 Score=90.32 Aligned_cols=67 Identities=31% Similarity=0.500 Sum_probs=64.8
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-CHHHHHHHHHHHHHhCC
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALADAKACRALRP 399 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p 399 (458)
.++.+...|..++..|+|++|+..|+++++++|+++.+|+++|.|+.++| ++.+|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999999999999999999999 79999999999999998
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.33 E-value=1.3e-11 Score=124.41 Aligned_cols=124 Identities=7% Similarity=-0.058 Sum_probs=119.1
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..++.++..|....+.|.+++|...+..++++.|++..++.++|.++.+++++++|+..++++++.+|+++.+++.+|.+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+..+|+|++|...|++++..+|+++.++..++.+++.+|+..++
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999887654
No 122
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=4e-12 Score=117.10 Aligned_cols=122 Identities=30% Similarity=0.345 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
.-+.-|..|+..|.+|+|+.++..+.+. ...+..|-|+||-|+-.||.+||+|||+. |+++|..|.+|||
T Consensus 549 nPLaLLLDaaLeGEldlVq~~i~ev~Dp---------SqpNdEGITaLHNAiCaghyeIVkFLi~~-ganVNa~DSdGWT 618 (752)
T KOG0515|consen 549 NPLALLLDAALEGELDLVQRIIYEVTDP---------SQPNDEGITALHNAICAGHYEIVKFLIEF-GANVNAADSDGWT 618 (752)
T ss_pred chHHHHHhhhhcchHHHHHHHHHhhcCC---------CCCCccchhHHhhhhhcchhHHHHHHHhc-CCcccCccCCCCc
Confidence 3455689999999999999999886552 23456799999999999999999999997 9999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCcHHHHHH--HcCCHHHHHHHHh
Q 012683 93 PLLHAARQGHTETAKYLFEHGANPT-IPSNLGATALHHSA--GIGNIELLTYLLS 144 (458)
Q Consensus 93 ~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~--~~~~~~~~~~Ll~ 144 (458)
|||+|+..++..+++.|++.|+-+- ..-.++.|+..-+- ..|..+|.++|..
T Consensus 619 PLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 619 PLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG 673 (752)
T ss_pred hhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence 9999999999999999999997653 23346778776553 4578889888875
No 123
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=1.8e-11 Score=122.82 Aligned_cols=109 Identities=17% Similarity=0.078 Sum_probs=99.0
Q ss_pred hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q 012683 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAF 425 (458)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 425 (458)
..+++++|+..+++|++++|+++.++..+|.++...|++++|+..|++|++++|+++.+|+.+|.++...|++++|+..|
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 426 YEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 426 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
+++++++|.++.+...+..++...+++++
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHH
Confidence 99999999998776666655555665543
No 124
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=5.9e-12 Score=120.04 Aligned_cols=135 Identities=17% Similarity=0.155 Sum_probs=119.9
Q ss_pred CCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683 321 KELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 400 (458)
+..+.+.....+.=.+|+-.|.+|.+.++++.|.-.|++|++++|.+..+....|..+.++|+.++|++.+++|+.++|.
T Consensus 476 ~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 476 KSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred HHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 33444444445666789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++-.-|.+|.+++.++++++|+..+++.-++-|++..++..++.++++++..+.+
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 9999999999999999999999999999999999999999999999999876643
No 125
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.6e-12 Score=105.94 Aligned_cols=104 Identities=32% Similarity=0.501 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
+++..-++.+.+.|+.+|....|..||.+|.+||.++|..+..|.|+|.||+++.+|+.+..++++|++++|+..+++|.
T Consensus 4 ~~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~f 83 (284)
T KOG4642|consen 4 PEMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYF 83 (284)
T ss_pred cccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHH
Confidence 34456688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
+|.++.....|++|+..+.+|..+
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999999543
No 126
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.30 E-value=3.2e-11 Score=126.33 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=69.7
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..+...|..+.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|++|++++|+++.+++++|.++..
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
+|++++|+..|+++++++|+...+....+.++.+.
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 66666666666666666666655555555554443
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.30 E-value=2.3e-11 Score=107.09 Aligned_cols=116 Identities=21% Similarity=0.308 Sum_probs=106.6
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..++...+.|..++.+|++..|+..|..|++.+|++..++|.||.+|+.+|+-..|+.++++++++.|++..+-..+|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHH
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVE 447 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~ 447 (458)
+...|++++|..+|++.++-+|.+ .+++..+..+.+
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE 154 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH
Confidence 999999999999999999999954 455555554433
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=8.5e-12 Score=117.11 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=108.1
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE 416 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~ 416 (458)
..-+|..|.-.|+|++|+.+|+.||...|++..+|..+|..+....+..+|+..|.+|+++.|.+.++.|++|.+++.+|
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCC----------cHHHHHHHHHHHHHhhhhh
Q 012683 417 KFDEAANAFYEGVTLDPE----------NKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 417 ~~~~A~~~~~~a~~~~p~----------~~~~~~~l~~~~~~~~~~~ 453 (458)
.|++|.+.|..||.+.+. +..+|..|..++..+++.+
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 999999999999987654 1358889998888877765
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.29 E-value=3.2e-11 Score=97.73 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=96.6
Q ss_pred HHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683 355 DAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE 434 (458)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 434 (458)
+.|+++++..|++..+.+.+|.++.+.|++++|+..+++++.++|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhhcC
Q 012683 435 NKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++..+..++.++...+++.++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998887654
No 130
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=3.2e-11 Score=126.37 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=107.6
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHH
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE 420 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 420 (458)
+......|++++|+..|+++++++|+ +.+++++|.++.++|++++|+..|+++++++|+++.+++++|.++...|++++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33444559999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683 421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
|+..|+++++++|+++.++.+++.++..+|+++++.
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999877653
No 131
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.28 E-value=6.3e-11 Score=89.09 Aligned_cols=99 Identities=33% Similarity=0.508 Sum_probs=94.5
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL 415 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 415 (458)
.+...|..++..|++++|+..++++++..|.++.+++.+|.++...+++++|++.+.++++..|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCC
Q 012683 416 EKFDEAANAFYEGVTLDPE 434 (458)
Q Consensus 416 ~~~~~A~~~~~~a~~~~p~ 434 (458)
|+++.|...+.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988874
No 132
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.27 E-value=2.4e-10 Score=86.36 Aligned_cols=104 Identities=25% Similarity=0.251 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----hHH
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW----PKA 404 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~ 404 (458)
...+....+--+|..+...|+.+.|++.|.+++.+.|..+++|.|+|+++.-.|+.++|++++.+|+.+..+- -.+
T Consensus 38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence 4456677788899999999999999999999999999999999999999999999999999999999996543 467
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683 405 CYREGAALRLLEKFDEAANAFYEGVTLD 432 (458)
Q Consensus 405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 432 (458)
|..+|.+|..+|+-+.|..+|..|-++.
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 8999999999999999999998875543
No 133
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.27 E-value=1.9e-11 Score=112.18 Aligned_cols=125 Identities=21% Similarity=0.230 Sum_probs=105.8
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..+..+...|..+.+.|++++|+..|+++++++|+++.+...++.++...|+++++...+....+..|+++..+..+|.+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
+..+|++++|+..|+++++.+|+++.....++.++.+.|+.+++.
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999987764
No 134
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.27 E-value=9.9e-11 Score=98.88 Aligned_cols=105 Identities=23% Similarity=0.326 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
...+..+...|..+...|+|++|+..|+++++..|+. ..+++++|.++.++|++++|+..+.+++++.|+++.++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4667889999999999999999999999999987653 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh--------------HHHHHHHHHHhhccCCCc
Q 012683 408 EGAALRLLEK--------------FDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 408 ~a~~~~~~~~--------------~~~A~~~~~~a~~~~p~~ 435 (458)
+|.++...|+ +++|++.+++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999887 788999999999999887
No 135
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=9.3e-11 Score=104.22 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=67.9
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR--PDWPKACYREGAAL 412 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~ 412 (458)
..+...|..++..|++++|++.|+++++..|.+..+++++|.++...|++++|+..+.+++... |.....++.+|.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555555432 33444555566666
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
...|++++|...|.+++..+|++...+..++.++...+++.+
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666666666666666666655555443
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=3.8e-11 Score=95.87 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=91.7
Q ss_pred HhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 359 QAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 359 ~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
....+. ++..+..|.+|..+...|++++|.+.|+-+..++|.++..|+++|.++..+|+|++|+..|.+|+.++|+++.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 345667 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCC
Q 012683 438 LVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 438 ~~~~l~~~~~~~~~~~~~~ 456 (458)
..++++.|+..+|+...+.
T Consensus 105 ~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 105 APWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHHHHHHHHHcCCHHHHH
Confidence 9999999999999876543
No 137
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.25 E-value=7e-11 Score=105.58 Aligned_cols=109 Identities=22% Similarity=0.225 Sum_probs=100.8
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH---H
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK---A 404 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~ 404 (458)
...++.++..|..++..|+|++|+..|++++...|+++ .+++.+|.++.+.|++++|+..++++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45677899999999999999999999999999999876 58899999999999999999999999999998886 7
Q ss_pred HHHHHHHHHHh--------hhHHHHHHHHHHhhccCCCcHHHH
Q 012683 405 CYREGAALRLL--------EKFDEAANAFYEGVTLDPENKELV 439 (458)
Q Consensus 405 ~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~~~ 439 (458)
++.+|.++... |++++|++.|++++..+|++..+.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 99999999887 999999999999999999987654
No 138
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=1.2e-10 Score=103.60 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=109.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccC--CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFD--PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
...+...|..++..|++++|+..|+++++.. |.....++++|.++...|++++|...+.++++.+|+++.+++.+|.+
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 3567788999999999999999999999864 45677899999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+...|++++|+..+++++...|+++..+..+..+....++..++
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999888888888888888877776543
No 139
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=5.7e-11 Score=109.44 Aligned_cols=108 Identities=24% Similarity=0.217 Sum_probs=98.2
Q ss_pred ccHHHHHHHHHHhhcc---CCC-chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHH
Q 012683 348 KDYLMAVDAYTQAIDF---DPS-DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN 423 (458)
Q Consensus 348 ~~~~~A~~~~~~al~~---~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 423 (458)
+..+.++..+.+++.. +|. .+..|+++|.+|..+|++++|+.+|+++++++|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3567788889999964 443 378899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 424 AFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 424 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.|+++++++|++..++.+++.++...++++++
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999888877654
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.24 E-value=1.5e-11 Score=90.25 Aligned_cols=82 Identities=27% Similarity=0.460 Sum_probs=74.6
Q ss_pred hhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHH
Q 012683 346 KQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN 423 (458)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 423 (458)
+.|+|++|+..|+++++..|. +...++.+|.|+++.|+|++|+..+++ .+.+|.++...+.+|.++..+|+|++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 577888999999999999999999999 88999999999999999999999999999
Q ss_pred HHHHh
Q 012683 424 AFYEG 428 (458)
Q Consensus 424 ~~~~a 428 (458)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 141
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.23 E-value=8.8e-11 Score=119.93 Aligned_cols=121 Identities=19% Similarity=0.195 Sum_probs=81.6
Q ss_pred HHHHHHhhhHHHhhccHHH----HHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLM----AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
+..+...|..++..|++++ |+..|+++++++|+++.++.++|.++.+.|++++|+..++++++++|+++.+++.+|
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3445556666666676664 666677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
.++...|++++|+..|++++..+|++......++.++...|+.++
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 777777777777777777776667666555555666666665544
No 142
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.23 E-value=3.3e-10 Score=95.34 Aligned_cols=106 Identities=21% Similarity=0.208 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
...+..+...|..++..|+|++|+..|.+++.+.|+. +.+|+++|.++...|++++|+..+++|+.++|....++..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3568889999999999999999999999999987663 4689999999999999999999999999999999999999
Q ss_pred HHHHHH-------HhhhHH-------HHHHHHHHhhccCCCcH
Q 012683 408 EGAALR-------LLEKFD-------EAANAFYEGVTLDPENK 436 (458)
Q Consensus 408 ~a~~~~-------~~~~~~-------~A~~~~~~a~~~~p~~~ 436 (458)
+|.++. .+|+++ +|+..|++++..+|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999 666766 66666677888888654
No 143
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.22 E-value=1.1e-10 Score=119.16 Aligned_cols=105 Identities=14% Similarity=0.023 Sum_probs=93.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..+..+...|..++..|++++|+..|+++++++|+++.++.++|.++.+.|++++|+..|++++..+|+++.+++.+|.+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 44567888899999999999999999999999999999999999999999999999999999999999988878888999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcH
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENK 436 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~ 436 (458)
+...|++++|+..|+++++.+|++.
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999888754
No 144
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.2e-10 Score=102.13 Aligned_cols=108 Identities=36% Similarity=0.499 Sum_probs=97.5
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
+.|+-+++.|+.||+..+|..|+..|++.|...-. +..+|+|||.|..-+|+|..|+.++.+|++++|++.++|++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 58999999999999999999999999999987544 35789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELV 439 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 439 (458)
-|.|++.+.++.+|..+.+..+..+-+...+.
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999999888877765444433
No 145
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.19 E-value=4e-10 Score=99.41 Aligned_cols=118 Identities=20% Similarity=0.281 Sum_probs=108.3
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.-..++.+...++-.|++..||+..+..+++.|.++.++-.||.||...|+...|+.+.+.|.++..++.+++|..+..+
T Consensus 154 e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~ 233 (504)
T KOG0624|consen 154 EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL 233 (504)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 34456777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
+..|+.+.++...+++++++|+++.++-.+..+.+-.+
T Consensus 234 Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999988777666655443
No 146
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.17 E-value=1.3e-10 Score=80.71 Aligned_cols=64 Identities=28% Similarity=0.344 Sum_probs=42.5
Q ss_pred HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP 402 (458)
Q Consensus 339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 402 (458)
.+|..+++.|+|++|+..|+++++..|.++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3566666667777777777777776666667777777777777777777777777776666654
No 147
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.16 E-value=7.4e-10 Score=109.23 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=121.6
Q ss_pred CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683 324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK 403 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 403 (458)
+.........++.+...|+.+|.+|++++|.+.+.++|.++|..+.+|+.+|.+|...|+.++++..+-.|--++|.+.+
T Consensus 129 ~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e 208 (895)
T KOG2076|consen 129 SRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE 208 (895)
T ss_pred CCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH
Confidence 33334444568889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 404 ACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 404 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
.|..++.....+|.+..|.-+|.+|++.+|.+-+.......+++++|+...
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~ 259 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKR 259 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHH
Confidence 999999999999999999999999999999999999999999998887543
No 148
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.15 E-value=4.6e-10 Score=100.31 Aligned_cols=122 Identities=17% Similarity=0.048 Sum_probs=108.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh---HHHhHHHHHHhh--------CCHHHHHHHHHHHHHhCCCCh
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT---LLSNRSLCWIRL--------GQAEHALADAKACRALRPDWP 402 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~p~~~ 402 (458)
...+...|..++..|+|++|+..|+++++..|+++. +++.+|.++... |++++|++.+++++..+|++.
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 456788999999999999999999999999998876 799999999987 889999999999999999986
Q ss_pred HHH-----------------HHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhhhhhcC
Q 012683 403 KAC-----------------YREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 403 ~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~ 455 (458)
.++ +.+|..+...|++++|+..|++++...|+. +++++.++.++..+++..++
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 543 467889999999999999999999987764 58999999999999887654
No 149
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.14 E-value=3.8e-11 Score=105.94 Aligned_cols=113 Identities=27% Similarity=0.428 Sum_probs=107.6
Q ss_pred CCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 012683 322 ELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW 401 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 401 (458)
...++.++...++.+.+-.+..++..|.+++|++.|..+|++.|....+|..++.++++++++..|+++|..|+.++|+.
T Consensus 102 s~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 102 SNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence 45567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPE 434 (458)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 434 (458)
.+.|-.+|.++..+|+|++|..++..+++++-+
T Consensus 182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 182 AKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred ccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999998744
No 150
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.14 E-value=9.3e-10 Score=98.24 Aligned_cols=111 Identities=11% Similarity=-0.000 Sum_probs=98.3
Q ss_pred HHHHHHhhhHH-HhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC---ChHHHH
Q 012683 334 AAEAKARGDEA-FKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPD---WPKACY 406 (458)
Q Consensus 334 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~ 406 (458)
....+..|..+ ++.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|.++++..|+ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35567777776 66799999999999999999998 589999999999999999999999999998887 478999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683 407 REGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444 (458)
Q Consensus 407 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 444 (458)
.+|.++..+|+++.|...|+++++..|+...+.....+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r 259 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR 259 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 99999999999999999999999999998876544333
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.14 E-value=1.2e-10 Score=80.79 Aligned_cols=65 Identities=26% Similarity=0.365 Sum_probs=60.9
Q ss_pred HhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH
Q 012683 372 SNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436 (458)
Q Consensus 372 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 436 (458)
+.+|..+++.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999975
No 152
>PLN02789 farnesyltranstransferase
Probab=99.14 E-value=8e-10 Score=101.75 Aligned_cols=119 Identities=13% Similarity=0.010 Sum_probs=110.2
Q ss_pred HHHHHHHHHhhhHHHhhc-cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCH--HHHHHHHHHHHHhCCCChHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQK-DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA--EHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
.+....+..+|..+...+ ++++++..+.++++.+|.+..+|++|+.+..++|+. ++++..++++++++|.+..+|..
T Consensus 68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~ 147 (320)
T PLN02789 68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSH 147 (320)
T ss_pred chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHH
Confidence 345667888888888888 689999999999999999999999999999999974 78899999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
++.++..+|+|++|++++.++++.+|.+..++...+.++..+
T Consensus 148 R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 148 RQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988765
No 153
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=2.7e-10 Score=95.32 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=103.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--CCCChHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL--RPDWPKACYREG 409 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a 409 (458)
....++..++..|-+.|+-+.|-+.|++|+.++|++.+++.|.|.=+...|+|++|...|++|+.. -|..+..|-++|
T Consensus 67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G 146 (250)
T COG3063 67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLG 146 (250)
T ss_pred ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhH
Confidence 345567778888889999999999999999999999999999999999999999999999999874 466778899999
Q ss_pred HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
.|..+.|+++.|.++|+++++++|+.+.....+......-+++
T Consensus 147 ~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 147 LCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 9999999999999999999999999888887777776655544
No 154
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.11 E-value=8.4e-10 Score=115.13 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=111.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+..+...|..+...|++++|+..|+++++++|.++.++..+|.++...|++++|+..++++++..|+++. ++.+|.++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 4568889999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
..|++++|+..|+++++.+|+++.++..++.++...+..
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 999999999999999999999999999999887755443
No 155
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.08 E-value=9.7e-10 Score=119.94 Aligned_cols=118 Identities=18% Similarity=0.149 Sum_probs=79.9
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH------
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA------ 411 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~------ 411 (458)
...|..++..|++++|+..|+++++++|+++.+++.+|.++...|++++|++.|+++++++|++..++..++.+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 34566667777777777777777777777777777777777777777777777777777777766655444433
Q ss_pred ------------------------------------HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 412 ------------------------------------LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 412 ------------------------------------~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+...|++++|++.|+++++++|+++.++..++.++.+.++++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33456777777777777777777777777777777666665543
No 156
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=1.9e-09 Score=99.95 Aligned_cols=124 Identities=19% Similarity=0.097 Sum_probs=116.1
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
......+-.+..++..+++++|...++..+...|+++.++..++.++++.++..+|.+.+++++.++|+.+-..+++|.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+...|++.+|+..++..+..+|+++..|..|++++..+|+..++
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 99999999999999999999999999999999999999886653
No 157
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.06 E-value=8.8e-10 Score=120.24 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=74.4
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh--------------HHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT--------------LLSNRSLCWIRLGQAEHALADAKACRALR 398 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 398 (458)
.+..+...|..+++.|++++|+..|+++++.+|++.. ....+|.++.+.|++++|+..|+++++++
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3445566666666666666666666666666665432 11234556666666666666666666666
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 399 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
|+++.+++.+|.++...|++++|++.|+++++++|++..++..+..++.
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6666667777777777777777777777777777777666666666654
No 158
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=5.7e-10 Score=105.09 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=104.1
Q ss_pred CCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------------------------------------
Q 012683 325 EVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------------------------------------ 368 (458)
Q Consensus 325 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------------------------ 368 (458)
.......+.+++|..+|......++-..||..+++|++++|++.
T Consensus 310 AAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l 389 (579)
T KOG1125|consen 310 AAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHL 389 (579)
T ss_pred HHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhc
Confidence 33445556777788888888777777777777777777777643
Q ss_pred -----------------------------------------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 369 -----------------------------------------TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 369 -----------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
.+...+|.+|...|+|++|++.|+.|++.+|++...|.+
T Consensus 390 ~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNR 469 (579)
T KOG1125|consen 390 VSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNR 469 (579)
T ss_pred cccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 366677788888888888888888888888888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+|-.+..-.+.++|+..|++|+++.|+...++++++..+-.+|.+.++
T Consensus 470 LGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 470 LGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 888888888888888888888888888888888888888888777654
No 159
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.04 E-value=3.5e-09 Score=102.31 Aligned_cols=121 Identities=17% Similarity=0.086 Sum_probs=76.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
...+...+..+.+.|+|++|++.|.++++..|.+. ..+..+|.++.+.|++++|+..|+++++.+|+...+++.+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 220 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL 220 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence 34455566666666666666666666666655432 2445666666666777777777777777667666667777
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHhhhhhc
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPEN-KELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~ 454 (458)
|.++...|++++|++.|++++..+|++ ..++..++.++...++.++
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777766666654 3445556666665555443
No 160
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.03 E-value=2.7e-09 Score=114.38 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=109.5
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..+..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|.+..+++.+|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 44667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+...|++++|+..|++++..+|++..++..++.++...++++++
T Consensus 203 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 203 LLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999998888888888777765543
No 161
>PLN02789 farnesyltranstransferase
Probab=99.03 E-value=3.7e-09 Score=97.42 Aligned_cols=111 Identities=15% Similarity=0.070 Sum_probs=103.3
Q ss_pred HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH--HH
Q 012683 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALADAKACRALRPDWPKACYREGAALRLLEKF--DE 420 (458)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~--~~ 420 (458)
+...+.+++|+..+.++|+++|.+..+|..|+.++..+| .+++|+..++++++.+|++..+|++++.++..+|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 556789999999999999999999999999999999999 689999999999999999999999999999999974 78
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
++..+.+++..+|.+-.+|...+-++..++++++
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence 8999999999999999999999999998877653
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.4e-09 Score=92.46 Aligned_cols=118 Identities=17% Similarity=0.058 Sum_probs=104.4
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC---CHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG---QAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
.+++.|...|..|+..|++..|...|.+|+++.|+++.++..+|.+++... .-.+|...+++|+++||++..+.+.+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 456779999999999999999999999999999999999999999887754 46789999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
|+.++..|+|.+|...++..++..|.+..-...+.....+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999887765555555444433
No 163
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.02 E-value=2.8e-09 Score=114.33 Aligned_cols=121 Identities=23% Similarity=0.264 Sum_probs=104.6
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
...+...|..+...|++++|+..|+++++..|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|.++.
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888 77888888888888888888888999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..|++++|+..|+++++.+|.++.++..++.++...|+..++
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999998888887654
No 164
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.01 E-value=4.4e-09 Score=101.63 Aligned_cols=106 Identities=20% Similarity=0.207 Sum_probs=50.2
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
.+...|..+.+.|++++|++.|+++++.+|.+ ..++..++.+|.+.|++++|+..++++++..|+... +..+|.++..
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~ 294 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEE 294 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHH
Confidence 33444444445555555555555555444433 233444444555555555555555555555444332 2444555555
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAF 442 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l 442 (458)
.|++++|+..|+++++.+|++..+...+
T Consensus 295 ~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 295 QEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred hCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5555555555555555555444443333
No 165
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.01 E-value=4.1e-09 Score=106.56 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=99.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..+++....+..+++.+++++|...+++++..+|+++.+++.+|.++.++|+|++|+..|++++..+|+++.++..+|.+
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~ 197 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS 197 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCc
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~ 435 (458)
+...|+.++|...|+++++...+-
T Consensus 198 l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 198 LTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHcCCHHHHHHHHHHHHHhhCcc
Confidence 999999999999999999885543
No 166
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.7e-09 Score=98.68 Aligned_cols=113 Identities=21% Similarity=0.268 Sum_probs=102.9
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCC-------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPS-------DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
+.+.|.+.|..+.|.+|+..|+.++...+. ....+.|+|.++.+++++++|+..+++|+.+.|.++.+|-..|
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 567889999999999999999999953222 3457999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
.+|..+|+++.|++.|.+++.+.|++..+...|+.+.+..
T Consensus 497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999887753
No 167
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.99 E-value=3.5e-09 Score=90.72 Aligned_cols=118 Identities=20% Similarity=0.218 Sum_probs=109.8
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEK 417 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~ 417 (458)
...+..+...|+-+++....+++....|.+..+..-.|...+..|+|.+|+..+.+|..++|++.++|..+|.+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 56777888889999999999998889999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 418 FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 418 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+++|...|.+++++.|+++.+..+++..+.--++...+
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHH
Confidence 99999999999999999999999999998877776544
No 168
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2.2e-09 Score=98.12 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=115.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+.++.++|+..|..|++++|.+.|.+|+.-+.....++||.|..+.++|+.++|++.|-+.-.+=-++.++++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.+.+...|+++|.++..+-|+++.+...|+.++.+-|+..++
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence 999999999999999999999999999999999988776543
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.98 E-value=3.1e-09 Score=75.69 Aligned_cols=68 Identities=32% Similarity=0.512 Sum_probs=44.4
Q ss_pred hHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 342 DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
..+++.++|++|++.+++++.++|+++.+|+.+|.++.++|++.+|+.+++++++.+|+++.+..-++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666665554443
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.97 E-value=1.6e-09 Score=75.99 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=37.8
Q ss_pred HhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683 379 IRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFR 443 (458)
Q Consensus 379 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 443 (458)
++.|++++|++.|+++++.+|++..+++.+|.++...|++++|...+.+++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555666666666666666666666666666666666666666666666666666555555444
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.96 E-value=3.3e-09 Score=74.34 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=62.5
Q ss_pred HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
+++.|+|++|++.|++++..+|++..+++.+|.|+++.|++++|...+.+++..+|+++..+.-++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46889999999999999999999999999999999999999999999999999999998877776653
No 172
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=6.4e-09 Score=101.11 Aligned_cols=116 Identities=22% Similarity=0.123 Sum_probs=76.4
Q ss_pred HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH
Q 012683 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF 418 (458)
Q Consensus 339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~ 418 (458)
..+..+...+..++|..++.+|-.++|..+..|+.+|.++...|.+.+|.+.|..|+.++|+++....-+|.++.+.|+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP 734 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence 33333444455566666666666666666666777777776677777777777777777777666666677777666666
Q ss_pred HHHHH--HHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 419 DEAAN--AFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 419 ~~A~~--~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
.-|.. .+..+++++|.++++|+.++.+++++|+.++
T Consensus 735 ~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 66666 6666666677777777777766666666554
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.93 E-value=6e-09 Score=74.15 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=65.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683 374 RSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444 (458)
Q Consensus 374 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 444 (458)
+..+|...++|++|++.+++++.++|+++..++.+|.++...|+|++|++.|.++++..|+++.+......
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35688999999999999999999999999999999999999999999999999999999999988766554
No 174
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=2.7e-08 Score=86.54 Aligned_cols=111 Identities=20% Similarity=0.134 Sum_probs=101.4
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYR 407 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~ 407 (458)
++.+.+.|..+++.|+|.+|...|...+...|++ +.++|-+|.+++.+|+|++|...|..+++-.|++ |++++.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3448999999999999999999999999999986 6899999999999999999999999999988765 688999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 444 (458)
+|.+..++|+.++|...|+++++..|+...+......
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999999999999999999887755443
No 175
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.92 E-value=4.4e-08 Score=77.09 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=96.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh---HHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP---KACYR 407 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~ 407 (458)
++.+...|...+++|+|.+|++.|+......|.. ..+...++.+|++.+++++|+..+++-+++.|+++ -++|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4678999999999999999999999999887764 57899999999999999999999999999999885 57899
Q ss_pred HHHHHHHhhh---------------HHHHHHHHHHhhccCCCcHHHH
Q 012683 408 EGAALRLLEK---------------FDEAANAFYEGVTLDPENKELV 439 (458)
Q Consensus 408 ~a~~~~~~~~---------------~~~A~~~~~~a~~~~p~~~~~~ 439 (458)
+|.+++.... ...|...|+..+...|+.+-+-
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999999987 8999999999999999987654
No 176
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.91 E-value=3.8e-09 Score=96.98 Aligned_cols=94 Identities=35% Similarity=0.509 Sum_probs=85.1
Q ss_pred CCCCCCCCc------HHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCC
Q 012683 182 NAETEDNIT------PLLSAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG 253 (458)
Q Consensus 182 ~~~~~~~~t------~l~~a~~~~~~~~~~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g 253 (458)
..+|.+|.+ -||..+..|+.++.-.|+..|+++|+. ..|.||||+|+..|+..-+++|+=+|+|+...|.+|
T Consensus 121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G 200 (669)
T KOG0818|consen 121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG 200 (669)
T ss_pred CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence 345555544 489999999999999999999999988 789999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHhhcCC
Q 012683 254 QKPIQVAAARGNREAVEILFPL 275 (458)
Q Consensus 254 ~t~l~~A~~~~~~~~v~~Ll~~ 275 (458)
+||+.+|-..||.++.+-|++.
T Consensus 201 mtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 201 MTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred CcHHHHHHhcCchHHHHHHHHH
Confidence 9999999999999998888754
No 177
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.90 E-value=1.6e-08 Score=105.57 Aligned_cols=108 Identities=12% Similarity=-0.011 Sum_probs=102.7
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
..+....+|..+...|++++|++.+++++...|.++.+++.+|.++...|++++|++.+++++.++|+++.+++.+|.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHH
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVF 440 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 440 (458)
..+|++++|+..++++++..|+++.+..
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999997654
No 178
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.89 E-value=2.1e-08 Score=81.28 Aligned_cols=98 Identities=24% Similarity=0.277 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh--
Q 012683 350 YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ----------AEHALADAKACRALRPDWPKACYREGAALRLLEK-- 417 (458)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~-- 417 (458)
|+.|.+.++.....+|.+++.+++-|.+++.+.+ +++|+.-|++|+.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999999998888877643 5688999999999999999999999999998885
Q ss_pred ---------HHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 418 ---------FDEAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 418 ---------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
|+.|..+|++|+..+|++..++..|..+.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 899999999999999999999998887743
No 179
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=1e-08 Score=84.93 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
++++.-++++|..|-.-|-+.-|.-.|++++.+.|.-++++..+|.-+...|+|+.|.+.|+.++++||.+--++.++|.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAF 442 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 442 (458)
+++--|+|.-|.+.+.+..+-+|++|---.++
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 99999999999999999999999987544333
No 180
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=5.4e-09 Score=101.09 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=109.3
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL 415 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 415 (458)
+.+..|...+.+++|+++...++..++++|-....||++|.|..+++++..|.++|.+++.++|++..+|.+++.+|..+
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 34455566677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 416 EKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 416 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++-.+|...+++|++-+-++.+.|.++-.+...++.++++
T Consensus 567 ~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 9999999999999999988888988888877777766543
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.88 E-value=1.1e-08 Score=86.11 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=95.6
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCc--hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHh
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSD--ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLL 415 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~ 415 (458)
.+.+|-...|..+...+...+...+.+ ..+|+++|.++...|++++|+..|++++.+.|++ +.+|+++|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 445666777888888887776666655 6778999999999999999999999999997764 45899999999999
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 416 EKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 416 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
|++++|+..|++++.++|.....+..++.++..++
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998444
No 182
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.88 E-value=5.2e-09 Score=96.10 Aligned_cols=121 Identities=20% Similarity=0.204 Sum_probs=97.4
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccC--CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFD--PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
..+......+...++++++.+.+.++.... +.++.+|+.+|.++.+.|++++|++.+++|++++|+++.+...++.++
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL 190 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445556677888999999999999977655 678899999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
...|+++++.+.+....+..|+++..+..++.++..+|+.+++
T Consensus 191 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 9999999988888888888899999999999999999887653
No 183
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=4.2e-08 Score=91.18 Aligned_cols=115 Identities=18% Similarity=0.143 Sum_probs=106.3
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
-.+-..+..++..+++.+|++.+++++.++|..+.++.++|.++++.|++.+|+..+...+.-+|+++..|..+|++|..
T Consensus 341 ~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 341 YYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 33456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
+|+-.+|+..+-+.+.+...-.++...+..+.+++
T Consensus 421 ~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 421 LGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999888888887777776665
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.86 E-value=4.4e-08 Score=75.91 Aligned_cols=96 Identities=19% Similarity=0.022 Sum_probs=87.7
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC---ChHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPD---WPKACYRE 408 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~ 408 (458)
+.+++.|..+-..|+.++|+..|+++++..... ..++..+|.++..+|++++|+..+++++.-.|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 457889999999999999999999999975443 578999999999999999999999999999888 88888999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhc
Q 012683 409 GAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
+.++...|++++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988874
No 185
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.86 E-value=2.2e-08 Score=103.25 Aligned_cols=120 Identities=10% Similarity=0.015 Sum_probs=97.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
...+..+...++.|+|++|++.|+++++.+|.++.....++.++...|++++|+.++++++..+|.+...+..+|.++..
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999864444888888888999999999999994445555555555778999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
.|+|+.|++.|+++++.+|+++.++..+..++...++..+
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e 154 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV 154 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH
Confidence 9999999999999999999998888877777666655443
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=7.3e-09 Score=90.48 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=79.9
Q ss_pred HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
+-+-|.-.++.++|.+|+.-|.+||+++|.++..|-++|.+|.++|+|+.|+++.+.|+.+||....+|..|+.++..++
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44557778889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcCC
Q 012683 451 KFHGTD 456 (458)
Q Consensus 451 ~~~~~~ 456 (458)
++.++.
T Consensus 164 k~~~A~ 169 (304)
T KOG0553|consen 164 KYEEAI 169 (304)
T ss_pred cHHHHH
Confidence 877653
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.85 E-value=1e-07 Score=82.54 Aligned_cols=118 Identities=22% Similarity=0.205 Sum_probs=94.5
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh---HHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP---KAC 405 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~ 405 (458)
..++.+...|..++..|+|.+|+..|++.+...|.. +.+.+.+|.++.+.|++.+|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 457889999999999999999999999999998875 57899999999999999999999999999999875 689
Q ss_pred HHHHHHHHHhhh-----------HHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHh
Q 012683 406 YREGAALRLLEK-----------FDEAANAFYEGVTLDPENK---ELVFAFREAVEAG 449 (458)
Q Consensus 406 ~~~a~~~~~~~~-----------~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~ 449 (458)
|.+|.+++...+ ..+|+..|+..++..|+.+ ++...+..+..++
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 999999876643 4589999999999999875 4455555554444
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.84 E-value=1.1e-07 Score=84.55 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=97.6
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhH---HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATL---LSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACY 406 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~ 406 (458)
.++.+...|..++.+|+|++|++.|++++...|..+.+ .+.+|.++++.+++++|+..+++.+++.|++ +.++|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45668899999999999999999999999999988655 4899999999999999999999999999887 46789
Q ss_pred HHHHHHHHhh------------------hHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHh
Q 012683 407 REGAALRLLE------------------KFDEAANAFYEGVTLDPENK---ELVFAFREAVEAG 449 (458)
Q Consensus 407 ~~a~~~~~~~------------------~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~ 449 (458)
.+|.++..++ .-..|+..|+..++..|+.+ ++...+..+..++
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 9998875554 23578899999999999874 5555555555444
No 189
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.84 E-value=1.1e-08 Score=95.36 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhH---HHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATL---LSNRSLCWIRLGQAEHALADAKACRALR 398 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 398 (458)
+.....++++.++|..++..|+|++|+..|++|++++|++..+ |+|+|.||.++|++++|+.++++|+++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3455778999999999999999999999999999999999854 9999999999999999999999999983
No 190
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.83 E-value=4e-08 Score=73.42 Aligned_cols=85 Identities=27% Similarity=0.352 Sum_probs=80.3
Q ss_pred HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 370 LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
+++++|.++...|++++|+..++++++..|.++.+++.+|.++...+++++|++.|++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhc
Q 012683 450 RKFHG 454 (458)
Q Consensus 450 ~~~~~ 454 (458)
++...
T Consensus 82 ~~~~~ 86 (100)
T cd00189 82 GKYEE 86 (100)
T ss_pred HhHHH
Confidence 87654
No 191
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.80 E-value=8.9e-09 Score=96.12 Aligned_cols=125 Identities=27% Similarity=0.385 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCC
Q 012683 12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKL-DVDTQDEDG 90 (458)
Q Consensus 12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g 90 (458)
++..+.|..|+..+|+=.++..... |.. +-.++.+..|.||+|+..|+-++|++++++.+. .++..+..|
T Consensus 864 ppiseeil~av~~~D~~klqE~h~~----gg~-----ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~g 934 (1004)
T KOG0782|consen 864 PPISEEILRAVLSSDLMKLQETHLN----GGS-----LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETG 934 (1004)
T ss_pred CCccHHHHHHHHhccHHHHHHHHhc----CCc-----eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhh
Confidence 3455679999999998766665543 222 245778889999999999999999999998433 256677899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 012683 91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK 145 (458)
Q Consensus 91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 145 (458)
.|+||-|+..++-.++++|++.|+.....|..|.||-..|-..|+.++.-+|-+.
T Consensus 935 et~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 935 ETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred hHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999888653
No 192
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.80 E-value=1.9e-07 Score=76.38 Aligned_cols=124 Identities=19% Similarity=0.088 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKA 404 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~ 404 (458)
...+...+......+..+++..+...+++.++-.|+. ..+.+.+|.++...|++++|+..|++++...|+. +.+
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 4556777777788888889988888888888888887 5678888999999999999999999999877655 467
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.+++|.++...|+|++|+..+.. +.-.+-.+.+...++.++.+.|+..++
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence 88899999999999999998865 344455677888888888888877654
No 193
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.80 E-value=2.3e-08 Score=94.42 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=80.6
Q ss_pred HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
+...|...+..|+|++|+..|++|++++|+++.+|+.+|.++..+|++++|+.++++++.++|+++.+++.++.++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 012683 451 KFHGT 455 (458)
Q Consensus 451 ~~~~~ 455 (458)
++.++
T Consensus 85 ~~~eA 89 (356)
T PLN03088 85 EYQTA 89 (356)
T ss_pred CHHHH
Confidence 87754
No 194
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3e-08 Score=93.35 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=106.7
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-------CCCChHHHHHHHH
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-------RPDWPKACYREGA 410 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~~~~~a~ 410 (458)
.-.|..|.+-++++-|-.+|.+|+.+.|.+|-++..+|.+.+..+.|.+|+.+|+.++.. .+.|...+.++|.
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 345667778899999999999999999999999999999999999999999999999943 2346778999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++.+++.+++|+.+|++++.+.|.+..++..++.++..+|+.+.+
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH
Confidence 999999999999999999999999999999999999999887653
No 195
>PF13606 Ank_3: Ankyrin repeat
Probab=98.80 E-value=7.6e-09 Score=58.53 Aligned_cols=28 Identities=61% Similarity=0.905 Sum_probs=21.0
Q ss_pred CCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q 012683 220 GATPLHIAADIGSTEIIKCLLKAGADPN 247 (458)
Q Consensus 220 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~ 247 (458)
|+||||+||+.|+.++|++|+++|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 6777777777777777777777777765
No 196
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.80 E-value=4.1e-08 Score=95.63 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=100.9
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHH--HHHHHHHhCCCChHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALA--DAKACRALRPDWPKACYRE 408 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~a~~~~p~~~~~~~~~ 408 (458)
.--+..++..|..+..+|++.+|.+.|..|+.++|+++.+..-+|.++.+.|+..-|.. .+..|+++||.++++||.+
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34456689999999999999999999999999999999999999999999999888888 9999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
|.++..+|+.+.|.++|..|+++++.+|.
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999988774
No 197
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.80 E-value=1e-08 Score=99.94 Aligned_cols=86 Identities=34% Similarity=0.465 Sum_probs=80.9
Q ss_pred hhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012683 46 KTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDE-DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGA 124 (458)
Q Consensus 46 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~ 124 (458)
.+..+++|..|.|+||+++..|...++++||++ |+++...|. .|+||||-|+..|+++|+-.||++|....+.|+.|.
T Consensus 42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkegl 120 (1267)
T KOG0783|consen 42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGL 120 (1267)
T ss_pred hhhhhHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCC
Confidence 456789999999999999999999999999998 999998885 699999999999999999999999999999999999
Q ss_pred cHHHHHHH
Q 012683 125 TALHHSAG 132 (458)
Q Consensus 125 t~L~~A~~ 132 (458)
+||.+-++
T Consensus 121 splq~~~r 128 (1267)
T KOG0783|consen 121 SPLQFLSR 128 (1267)
T ss_pred CHHHHHhh
Confidence 99998876
No 198
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.79 E-value=1.6e-05 Score=82.81 Aligned_cols=363 Identities=13% Similarity=0.105 Sum_probs=199.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683 57 RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL-HAARQGHTE----TAKYLFEHGANPTIPSNLGATALHHSA 131 (458)
Q Consensus 57 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 131 (458)
++.+..-+..|+++-+..+++... .+|..-++.|. .-+..|..+ +++.+++.|..++... -.+.|...+
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t--~~~ll~a~~ 235 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT--FVVMLRASA 235 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHh
Confidence 345666667777777777776532 12333344443 334455533 3333444554443211 122334444
Q ss_pred HcCCHHHHHHH----HhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHH-HHHHcCCHH----
Q 012683 132 GIGNIELLTYL----LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL-SAVAAGSLT---- 202 (458)
Q Consensus 132 ~~~~~~~~~~L----l~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~-~a~~~~~~~---- 202 (458)
..|..+..+.+ ++.|...+.. ...+.+..-+..|..+-...+.+.-. ..|...++.+. ..+..|..+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~-~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTF-VSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccce-eHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHH
Confidence 45555544443 3444333211 11245666677777776666655321 12333333333 345556653
Q ss_pred HHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHH----HHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 203 CLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKC----LLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 203 ~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~----Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
+++.+.+.|..++... -.+.+...+..|.++-.+. +++.|..++..- +.+-++.-+..|+.+-+.-+++.-..
T Consensus 312 lf~~M~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~--~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 312 LYYEMRDSGVSIDQFT-FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA--NTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee--hHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 3344456666665331 1234555556676654444 445565554332 23456666778887777666543221
Q ss_pred CCCCCCcchhhHHHHHHhhcc---chhHHhhhhhcCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHH
Q 012683 279 DPSIPKWTVDGILEYMQSESG---KQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVD 355 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 355 (458)
+++..|.. .+. ..+..+ +-++....+.+.+..++ ...+...-..+.+.|.+++|.+
T Consensus 389 -~d~~t~n~--lI~-~y~~~G~~~~A~~lf~~M~~~g~~Pd-----------------~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 389 -KNLISWNA--LIA-GYGNHGRGTKAVEMFERMIAEGVAPN-----------------HVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred -CCeeeHHH--HHH-HHHHcCCHHHHHHHHHHHHHhCCCCC-----------------HHHHHHHHHHHhcCCcHHHHHH
Confidence 12222211 111 111111 11222223333332221 2235556667778888888888
Q ss_pred HHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683 356 AYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 356 ~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 433 (458)
.|+...+..+- +...|..+..++.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.++|
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 88887764332 3456777888888889999998887764 2334 345688888888888999999988888888888
Q ss_pred CcHHHHHHHHHHHHHhhhhhcC
Q 012683 434 ENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 434 ~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++...+..+..++.+.|+++++
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHH
Confidence 8887888888888877776654
No 199
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.78 E-value=6.8e-08 Score=78.99 Aligned_cols=95 Identities=22% Similarity=0.160 Sum_probs=83.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
..+.+..|..++..|+|++|+..|++++...|+. +.+.+.+|.+++..|++++|+..++. +.-.+..+.++..+|.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 4567889999999999999999999999987664 46888999999999999999999966 4455566788889999
Q ss_pred HHHHhhhHHHHHHHHHHhh
Q 012683 411 ALRLLEKFDEAANAFYEGV 429 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~ 429 (458)
++...|++++|+..|++|+
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999885
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=9e-08 Score=84.35 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=96.6
Q ss_pred cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh---hHHHHHHHH
Q 012683 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE---KFDEAANAF 425 (458)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~ 425 (458)
..+.-+.-++..+..+|++..-|..+|.+|+..|++..|...|.+|+++.|++++.+..+|.+++... .-.++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 34556667888899999999999999999999999999999999999999999999999999987665 456788899
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 426 YEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 426 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+++++++|++..+.+.|+..+.+.+++.++
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A 246 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEA 246 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence 999999999999999999999998887653
No 201
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.8e-08 Score=88.61 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=104.0
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhhh
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP---DWPKACYREGAALRLLEK 417 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~~a~~~~~~~~ 417 (458)
|..||=.++.+-|+.+|.+.+.+.-.+++++.|+|.|.+..++++-++..|.+|+...- .-.+.||++|++....|+
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 45567788889999999999999989999999999999999999999999999998754 346899999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 418 FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 418 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+.-|..+|+-|+..+|++.+++.+|+.+..+-|+..++
T Consensus 411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 99999999999999999999999999999888877654
No 202
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.76 E-value=1e-07 Score=80.41 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=84.6
Q ss_pred HHHHHhhccCC--CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 012683 355 DAYTQAIDFDP--SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGV 429 (458)
Q Consensus 355 ~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 429 (458)
+.+...+...+ ....+++++|.++...|++++|+..|++++++.|+. ..+++.+|.++..+|++++|+..|++++
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 99 (172)
T PRK02603 20 DLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL 99 (172)
T ss_pred HHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445455443 456789999999999999999999999999987764 4689999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHhhhh
Q 012683 430 TLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
...|++...+..++.++..+++.
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCCh
Confidence 99999999999999999887664
No 203
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.76 E-value=7.9e-08 Score=91.96 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=114.8
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..++.++...+..++|...+...++.++-.|.+++.+...|..+..+|+-++|....+.+++.|+.+...|.-+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
-.+|++|+++|+.|++++|+|.+++..++.+..+++++..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999988754
No 204
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.75 E-value=4.9e-09 Score=102.11 Aligned_cols=82 Identities=27% Similarity=0.358 Sum_probs=77.4
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258 (458)
Q Consensus 181 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~ 258 (458)
.|..|..|+++||+++..+..++++||+++|+++... ..|.||||-|+..|+++++-.||.+|+....+|++|.+||+
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq 124 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ 124 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence 4677899999999999999999999999999999988 67999999999999999999999999999999999999999
Q ss_pred HHHH
Q 012683 259 VAAA 262 (458)
Q Consensus 259 ~A~~ 262 (458)
.-++
T Consensus 125 ~~~r 128 (1267)
T KOG0783|consen 125 FLSR 128 (1267)
T ss_pred HHhh
Confidence 8776
No 205
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.75 E-value=7.5e-08 Score=75.79 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=79.7
Q ss_pred hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHH
Q 012683 368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFA 441 (458)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~ 441 (458)
+.+++.+|..+.+.|++++|+..|.++++..|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999887 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHHhhhhhcC
Q 012683 442 FREAVEAGRKFHGT 455 (458)
Q Consensus 442 l~~~~~~~~~~~~~ 455 (458)
++.++..+++..++
T Consensus 82 ~~~~~~~~~~~~~A 95 (119)
T TIGR02795 82 LGMSLQELGDKEKA 95 (119)
T ss_pred HHHHHHHhCChHHH
Confidence 99999988776543
No 206
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.74 E-value=1.4e-08 Score=93.05 Aligned_cols=97 Identities=23% Similarity=0.348 Sum_probs=86.7
Q ss_pred hcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHH
Q 012683 51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFE-HGANPTIPSNLGATALHH 129 (458)
Q Consensus 51 ~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~ 129 (458)
..+.++...+.+|+..|++..++.+.-. |.+++.+|.+..|+||+|+..|+.+++++|++ .+.+++.+|.||+|||.-
T Consensus 501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd 579 (622)
T KOG0506|consen 501 PRENDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD 579 (622)
T ss_pred cccccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence 3445667789999999999999988766 99999999999999999999999999999997 468899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCC
Q 012683 130 SAGIGNIELLTYLLSKGAE 148 (458)
Q Consensus 130 A~~~~~~~~~~~Ll~~~~~ 148 (458)
|...+|.+++++|-+.-..
T Consensus 580 A~~F~h~~v~k~L~~~~~~ 598 (622)
T KOG0506|consen 580 AKHFKHKEVVKLLEEAQYP 598 (622)
T ss_pred hHhcCcHHHHHHHHHHhcc
Confidence 9999999999999876543
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.74 E-value=3e-08 Score=92.55 Aligned_cols=70 Identities=21% Similarity=0.218 Sum_probs=67.2
Q ss_pred ccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 362 DFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKA---CYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 362 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
+.+|+++.+++|+|.+|.++|+|++|+..|++|++++|++..+ ||++|.+|..+|++++|+++|++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999999999965 999999999999999999999999997
No 208
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=3.8e-07 Score=77.72 Aligned_cols=113 Identities=17% Similarity=0.098 Sum_probs=85.0
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh-
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE- 416 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~- 416 (458)
+.+--.....|+--+||+.+...++..+.|.++|..++..|+.+|+|++|.-.+++++-+.|.++..+.++|.+++-.|
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 3344444455666677777777777777777888888888888888888888888888888888888888888877666
Q ss_pred --hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 417 --KFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 417 --~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
+++-|.++|.++++++|.+..+++.+-.+...+-
T Consensus 204 ~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 6777888888888888877777777666655554
No 209
>PF13606 Ank_3: Ankyrin repeat
Probab=98.73 E-value=1.9e-08 Score=56.93 Aligned_cols=28 Identities=54% Similarity=0.832 Sum_probs=15.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 012683 90 GETPLLHAARQGHTETAKYLFEHGANPT 117 (458)
Q Consensus 90 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 117 (458)
|+||||+|+..|+.++|++|+++|++++
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 5555555555555555555555555543
No 210
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.73 E-value=1.2e-08 Score=93.49 Aligned_cols=103 Identities=37% Similarity=0.468 Sum_probs=87.8
Q ss_pred CchhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 012683 3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD 82 (458)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~ 82 (458)
|.-.....-....-.++.|++.||+..++.+.-. + ......|.+..|+||+||..|+++++++|++..+.+
T Consensus 495 PRR~~~~~~~~~~i~~~~aa~~GD~~alrRf~l~----g-----~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~ 565 (622)
T KOG0506|consen 495 PRREGGPRENDTVINVMYAAKNGDLSALRRFALQ----G-----MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD 565 (622)
T ss_pred cccccCcccccchhhhhhhhhcCCHHHHHHHHHh----c-----ccccccccccchhheeecccCceeHHHHHHHHHcCC
Confidence 3333334445566789999999999999998755 2 235778999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114 (458)
Q Consensus 83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 114 (458)
++.+|.+|.|||.-|...+|.+++++|-+...
T Consensus 566 ~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 566 PDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred CChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence 99999999999999999999999999987643
No 211
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.73 E-value=2e-08 Score=58.64 Aligned_cols=33 Identities=55% Similarity=0.787 Sum_probs=28.2
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCC
Q 012683 219 GGATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251 (458)
Q Consensus 219 ~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~ 251 (458)
+|.||||+|+..|+.+++++|+++|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 478899999999999999999999988888764
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.9e-08 Score=89.99 Aligned_cols=106 Identities=34% Similarity=0.433 Sum_probs=99.4
Q ss_pred CCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683 321 KELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 400 (458)
.......++..++++..+.+|+.+++..+|.+|+..|+.||+++|++...|.+++.+++..++|++|.-++++.++++|.
T Consensus 36 ~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~ 115 (486)
T KOG0550|consen 36 SPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG 115 (486)
T ss_pred CccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC
Confidence 33445666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683 401 WPKACYREGAALRLLEKFDEAANAFY 426 (458)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~A~~~~~ 426 (458)
+++++.+.++++..+++..+|.+.|+
T Consensus 116 ~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 116 FSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred ccccccchhhhhhhhHHHHHHHHHhh
Confidence 99999999999999999999997776
No 213
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.70 E-value=1.8e-07 Score=96.62 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=102.5
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..+...|..+...|+|++|++.|+++++.+|+++.+++.++..+...++.++|++.++++...+|.... +..++.++..
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~l~layL~~~ 181 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-HHHHHHHHHh
Confidence 445566889999999999999999999999999999999999999999999999999999999998555 3556666666
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
.+++.+|++.|+++++.+|++.++...+..++...+-
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 7888779999999999999999999998888776654
No 214
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=2.2e-07 Score=81.92 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=88.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
..++...-..|-+..+|++||+.-.+...+.|.. +.+|+.+|+.+....+++.|...+.+|++-+|+..++-.-+
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l 220 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIIL 220 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhh
Confidence 3455666667777777777777777777776654 35677777777777777777777777777777777777777
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHhhhhhc
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPEN-KELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~ 454 (458)
|.++...|+|+.|++.++.+++.||+. +++...|..||.++++..+
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777777777777777777777777775 5667777777777776543
No 215
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.70 E-value=4.4e-07 Score=87.96 Aligned_cols=123 Identities=14% Similarity=0.088 Sum_probs=92.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-KACYREGA 410 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~a~ 410 (458)
+++......|...+..|+|+.|.+...++.+..|+....+...|.++...|++++|.+++.++.+..|++. .+....+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 45666677777777788888888887777777777666667777777777888888888888777777764 34555677
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
++...|+++.|+..+++.++..|+++.+...++.++.+.+++++
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 77778888888888887777778877777777777777777654
No 216
>PLN03077 Protein ECB2; Provisional
Probab=98.68 E-value=2.8e-05 Score=83.09 Aligned_cols=391 Identities=12% Similarity=0.077 Sum_probs=211.6
Q ss_pred HHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHH-HHc
Q 012683 22 ACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA-ARQ 100 (458)
Q Consensus 22 ~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~ 100 (458)
+..|+.+..+++.......+-..+ ..-.++.+..-+..|+++.+..+++... .+|...++.+..+ +..
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d-------~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVD-------VSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKN 367 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccc-------hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhC
Confidence 344555555555555443222111 1112455666667777777777766522 2333344444433 344
Q ss_pred CCHH----HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCcHHHHHHhCCCHHHHH
Q 012683 101 GHTE----TAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL----SKGAEVDSESDAGTPLIWAAGHGQQEAVK 172 (458)
Q Consensus 101 g~~~----~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~~~~~~~~~~~~t~l~~A~~~~~~~~~~ 172 (458)
|..+ +++.+.+.|..++.. .-.+.|...+..|..+.+..+. +.|...+.. ..++.+..-+..|+.+-..
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~-~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEI--TIASVLSACACLGDLDVGVKLHELAERKGLISYVV-VANALIEMYSKCKCIDKAL 444 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCce--eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHcCCHHHHH
Confidence 5433 333334455544432 1223344445556655444433 344332211 0113445556667776665
Q ss_pred HHHhcCCCCCCCCCCCCcHHHH-HHHcCCHHH----HHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHH----HcC
Q 012683 173 VLLEHHANPNAETEDNITPLLS-AVAAGSLTC----LDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL----KAG 243 (458)
Q Consensus 173 ~Ll~~~~~~~~~~~~~~t~l~~-a~~~~~~~~----~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll----~~g 243 (458)
.+.+.=. ..|...++.+.. .+..|..+- .+.+.+ +..++.. .-.+.|...+..|.++..+.+. +.|
T Consensus 445 ~vf~~m~---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~-t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIP---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV-TLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCC---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh-HHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 5555321 123333444433 344444432 222222 2233211 0123344555556665555444 556
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhcc-chhHHhhhhhcCCCCCCCCCCCC
Q 012683 244 ADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESG-KQLEETRNLKENNAPKDKAPMKE 322 (458)
Q Consensus 244 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 322 (458)
...+.. .+..-++.-+..|+.+-+.-+++.. .++...|... +..+...... .-++....+.+.+..++.
T Consensus 520 ~~~~~~--~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~l-I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~----- 589 (857)
T PLN03077 520 IGFDGF--LPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNIL-LTGYVAHGKGSMAVELFNRMVESGVNPDE----- 589 (857)
T ss_pred CCccce--echHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCc-----
Confidence 555433 2334566677788877665555432 2222222211 1111111111 112222333334433321
Q ss_pred CCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC--CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683 323 LPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP--SDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 400 (458)
..+...-..+.+.|.+++|.+.|+...+..+ .+...|..+..++.+.|++++|.+.+++. .+.|+
T Consensus 590 ------------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 590 ------------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred ------------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 1123333567788999999999998874432 23568888999999999999999998875 35664
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+..|..+-.++...|+.+.|....++.++++|++...+..+..++...|++++.
T Consensus 657 -~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 657 -PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 567888888888889999999999999999999999999999999888887654
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=98.66 E-value=4.3e-07 Score=85.06 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=87.6
Q ss_pred HHHHhhhHHHhhc---cHHHHHHHHHHhh---ccCCCchhHHHhHHHHHHhh---------CCHHHHHHHHHHHHHhCCC
Q 012683 336 EAKARGDEAFKQK---DYLMAVDAYTQAI---DFDPSDATLLSNRSLCWIRL---------GQAEHALADAKACRALRPD 400 (458)
Q Consensus 336 ~~~~~g~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~a~~~~p~ 400 (458)
++..+|...+.++ .-+.|+..|.+|+ +++|+...+|..+|.|+... ....+|.+..++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4566666665554 3456777788888 78888888888888887764 2345777788888888888
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
++.+++.+|.++...++++.|...|++|+.++|+.+.++...+.+..-.|+..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888888888888888888888888887777665555433
No 218
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.64 E-value=3.3e-07 Score=90.19 Aligned_cols=121 Identities=14% Similarity=0.011 Sum_probs=71.9
Q ss_pred HHHHHHHhhhHHHhhc---cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC--------CHHHHHHHHHHHHHh--CC
Q 012683 333 KAAEAKARGDEAFKQK---DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG--------QAEHALADAKACRAL--RP 399 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~a~~~--~p 399 (458)
.+-.++.+|..++..+ ++.+|+.+|++|++++|+++.+|..++.+|.... +..++.+...+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 3556777777776554 4778888899999988888766666666554431 123334444444442 45
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
..+.+|.-+|..+...|++++|...|++|+.++|+ ..++..++.++...|+.++
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555666666666666655553 4555555555555555443
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.64 E-value=3.7e-08 Score=71.07 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=48.3
Q ss_pred CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----CC---CChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 366 SDATLLSNRSLCWIRLGQAEHALADAKACRAL----RP---DWPKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
+-..++.++|.+|..+|+|++|+..|++++++ .+ .-..+++++|.++...|++++|++.|++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34567788888888888888888888888765 11 22567778888888888888888888887754
No 220
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.63 E-value=1.7e-07 Score=93.68 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=102.0
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhhhH
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL--RPDWPKACYREGAALRLLEKF 418 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~ 418 (458)
|.++..+|+|.+|+..|.+..+-..+...+|.|+|.||..+|+|..|++.|+.+++. ..+++.....||+++++.|.+
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 555667888999999998888777778899999999999999999999999999975 457889999999999999999
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 419 DEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
.+|.+.+..|+.+.|.++...|+++.+..++....-
T Consensus 733 ~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~l 768 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPSNTSVKFNLALVLKKLAESIL 768 (1018)
T ss_pred HHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998866543
No 221
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.63 E-value=1.4e-07 Score=88.40 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=100.3
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc---CCCCcHHHHHHhcCcHHH
Q 012683 159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV---AGGATPLHIAADIGSTEI 235 (458)
Q Consensus 159 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---~~g~t~L~~A~~~~~~~i 235 (458)
+..|+..++.--++....+|.++-.++.+..+.||+|++.|+-++|++|+++|..--.. ..|.|+||.|+-.++-.+
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v 949 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV 949 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence 34455555555555566678888888999999999999999999999999999764333 679999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 012683 236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP 274 (458)
Q Consensus 236 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 274 (458)
.++|++.|+....+|..|.||-.-|-..|+.+++-||-.
T Consensus 950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES 988 (1004)
T ss_pred HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence 999999999999999999999999999999999999864
No 222
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=6.2e-07 Score=76.48 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=69.1
Q ss_pred HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH
Q 012683 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF 418 (458)
Q Consensus 339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~ 418 (458)
-.|..+-..|.|++|++.|...++-+|++..++-..-.+.-.+|+.-+|++.+..-+..-|.+.++|..++.+|...|+|
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence 34555555566666666666666666666666655544555566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 419 DEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
+.|.-+|++.+-+.|.++-++..++.++..++
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 66666666666666666666666665555443
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=98.62 E-value=2e-07 Score=75.11 Aligned_cols=97 Identities=14% Similarity=0.030 Sum_probs=89.5
Q ss_pred hhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH
Q 012683 360 AIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV 439 (458)
Q Consensus 360 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 439 (458)
...+.++.....+..|.-++..|++++|...|+-+...+|.+++.++.+|.++..+++|+.|+..|-.|..++++++...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 34456667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCC
Q 012683 440 FAFREAVEAGRKFHGTD 456 (458)
Q Consensus 440 ~~l~~~~~~~~~~~~~~ 456 (458)
+..+.|+..+++...+.
T Consensus 109 f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 109 FFTGQCQLLMRKAAKAR 125 (165)
T ss_pred chHHHHHHHhCCHHHHH
Confidence 99999999998876553
No 224
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.61 E-value=5.7e-07 Score=90.06 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=108.5
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
-.++.++..|..+...|+|++|..+|.+++..+|++ .-.++.+|+.|++.|+++.|+..|++++...|++.+...-+|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 457789999999999999999999999999999988 6678899999999999999999999999999999999999999
Q ss_pred HHHHhh----hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 411 ALRLLE----KFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 411 ~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
.|...+ .-+.|...+.++++..|.+.+++..+++++.+.
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 998886 778899999999999999999999999998754
No 225
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.61 E-value=1.3e-07 Score=88.85 Aligned_cols=96 Identities=26% Similarity=0.347 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683 15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL 94 (458)
Q Consensus 15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L 94 (458)
-++|..|+...|+..+-.|+.+... .+......+.+|.|+||+||+.|++.+.++|| .+|+++..+|..|.|||
T Consensus 625 gqqLl~A~~~~Dl~t~~lLLAhg~~-----~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l 698 (749)
T KOG0705|consen 625 GQQLLRAVAAEDLQTAILLLAHGSR-----EEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTAL 698 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc-----hhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhh
Confidence 3556666766676666666665222 12222334455667777777777776666666 34677666677777777
Q ss_pred HHHHHcCCHHHHHHHHHcCCCC
Q 012683 95 LHAARQGHTETAKYLFEHGANP 116 (458)
Q Consensus 95 ~~A~~~g~~~~v~~Ll~~~~~~ 116 (458)
.+|-+.|.-+|+..|+.+|+..
T Consensus 699 ~yar~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 699 FYARQAGSQECIDVLLQYGCPD 720 (749)
T ss_pred hhHhhcccHHHHHHHHHcCCCc
Confidence 7777777777777777666553
No 226
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.60 E-value=4.4e-07 Score=87.95 Aligned_cols=122 Identities=15% Similarity=0.028 Sum_probs=104.7
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHH--HhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh--HHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLL--SNRSLCWIRLGQAEHALADAKACRALRPDWP--KACYRE 408 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~~ 408 (458)
..+.....|..+...|++++|++.++++++..|++.... ..+.......++..++++.++++++..|+++ .....+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 456778889999999999999999999999999987532 3344444556889999999999999999999 888899
Q ss_pred HHHHHHhhhHHHHHHHHH--HhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 409 GAALRLLEKFDEAANAFY--EGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~--~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
|.++++.|+|++|.++|+ .+++.+|+...+. .++.++.++|+.+++
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A 389 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHH
Confidence 999999999999999999 6888899877644 999999998887654
No 227
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.60 E-value=7.7e-08 Score=56.18 Aligned_cols=30 Identities=43% Similarity=0.711 Sum_probs=15.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 012683 90 GETPLLHAARQGHTETAKYLFEHGANPTIP 119 (458)
Q Consensus 90 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 119 (458)
|.||||+|+..|+.+++++|+++|++++.+
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~ 31 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINAR 31 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence 455555555555555555555555555443
No 228
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=9.9e-07 Score=84.09 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=90.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh----HHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP----KACYREG 409 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~a 409 (458)
...+...|..+...|++++|+..+++++++.|+++.++..+|.++...|++++|+..+.+++...|..+ ..|..+|
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 445667889999999999999999999999999999999999999999999999999999999987543 3567899
Q ss_pred HHHHHhhhHHHHHHHHHHhhccCC
Q 012683 410 AALRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 410 ~~~~~~~~~~~A~~~~~~a~~~~p 433 (458)
.++...|++++|+..|++++...|
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhcccc
Confidence 999999999999999999987766
No 229
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.59 E-value=8.3e-08 Score=70.27 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=66.3
Q ss_pred hCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 381 LGQAEHALADAKACRALRPD--WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 381 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.|+|++|+..++++++.+|. +...++.+|.++++.|+|++|+..+++ .+.+|.+..++..++.++.++++++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 68999999999999999995 567788899999999999999999999 888999999999999999999998764
No 230
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=3.3e-07 Score=87.36 Aligned_cols=118 Identities=17% Similarity=0.076 Sum_probs=91.7
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCch-------------------------------------hHHHhHHHHHHh
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-------------------------------------TLLSNRSLCWIR 380 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------------------------~~~~~~a~~~~~ 380 (458)
..+|..++..|++++|+..++++++..|++. .++..+|.++..
T Consensus 47 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 47 HVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH
Confidence 3455555666666666666666555555443 344567788899
Q ss_pred hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH----HHHHHHHHHHHhhhhhcC
Q 012683 381 LGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE----LVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 381 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~~ 455 (458)
.|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++...|.++. .+..++.++...|+.+++
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999999999999999999998775432 455788888888887654
No 231
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=3.3e-07 Score=93.81 Aligned_cols=121 Identities=12% Similarity=-0.053 Sum_probs=107.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh---------
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP--------- 402 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~--------- 402 (458)
...+++......+...+++++|+..+..+++..|+...+|+.+|.++...+++.+|.-. .++.+-+.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence 45677888888999999999999999999999999999999999999999988887766 6666666665
Q ss_pred ----------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 403 ----------KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 403 ----------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.+++.+|.||..+|++++|...|+++++++|+++.+..+++-.+... +.+++
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 89999999999999999999999999999999999999999988876 55443
No 232
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.58 E-value=4.6e-07 Score=70.29 Aligned_cols=88 Identities=20% Similarity=0.148 Sum_probs=78.3
Q ss_pred hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC---cHHHHHH
Q 012683 368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPE---NKELVFA 441 (458)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~ 441 (458)
+.++|++|.++-.+|+.++|+..|++++...+.. .+++..+|..+..+|++++|+..+++++...|+ +.....-
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4678999999999999999999999999986544 679999999999999999999999999998898 7788888
Q ss_pred HHHHHHHhhhhhcC
Q 012683 442 FREAVEAGRKFHGT 455 (458)
Q Consensus 442 l~~~~~~~~~~~~~ 455 (458)
++.++..+++.+++
T Consensus 81 ~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 81 LALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHCCCHHHH
Confidence 88888888877653
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=9.6e-07 Score=80.75 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=89.7
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
....+.+.+.++.+.++|.+|+....++|+++|++.-++|.+|.++..+++|+.|+.+|++|++++|.|-.+...+..+.
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34557888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHH-HHHHHHhhcc
Q 012683 413 RLLEKFDEA-ANAFYEGVTL 431 (458)
Q Consensus 413 ~~~~~~~~A-~~~~~~a~~~ 431 (458)
.+..++.+. .+.|...+..
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 888888877 4577766654
No 234
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.55 E-value=8.3e-07 Score=88.25 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=99.0
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
.-.+++...|.+|-++|+-++|....-.|-.++|.+...|..++....++|.+.+|.-.|.+||+.+|.+-+.++.++..
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L 250 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSL 250 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p 433 (458)
|.+.|++..|++.|.+.+.+.|
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999
No 235
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.54 E-value=2.2e-06 Score=82.66 Aligned_cols=94 Identities=11% Similarity=0.020 Sum_probs=52.5
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhH-HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATL-LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD 419 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 419 (458)
+....+.|++++|...|.++.+.+|+.... ....+..+...|++++|+..++++.+.+|+++.++..++.+|...|+++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 334455566666666666666555554322 2233555556666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhccCCC
Q 012683 420 EAANAFYEGVTLDPE 434 (458)
Q Consensus 420 ~A~~~~~~a~~~~p~ 434 (458)
+|++.+.+..+..+.
T Consensus 205 ~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 205 SLLDILPSMAKAHVG 219 (398)
T ss_pred HHHHHHHHHHHcCCC
Confidence 666555555544443
No 236
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.53 E-value=0.00019 Score=74.96 Aligned_cols=365 Identities=13% Similarity=0.036 Sum_probs=212.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhC---CCCCCCCCCCCCcH-HHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCcHHH
Q 012683 57 RGALHFAAREGKTDVCKYLLEEL---KLDVDTQDEDGETP-LLHAARQGHTETAKYL----FEHGANPTIPSNLGATALH 128 (458)
Q Consensus 57 ~t~L~~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L~ 128 (458)
++.+..-+..|+.+-+..+++.. |..++. ...+. |..++..|..+..+.+ ++.|...+.. ...+.+.
T Consensus 193 n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~---~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~--~~n~Li~ 267 (697)
T PLN03081 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEP---RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF--VSCALID 267 (697)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh---hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce--eHHHHHH
Confidence 35566667788876555554431 333322 12222 3344445655544443 5566555432 2345567
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHH----HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH-
Q 012683 129 HSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAV----KVLLEHHANPNAETEDNITPLLSAVAAGSLTC- 203 (458)
Q Consensus 129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~----~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~- 203 (458)
..+..|.++-+..+++.-...+.. ..++.+..-+..|..+-. +.+.+.|..++... -.+.+...+..|.++-
T Consensus 268 ~y~k~g~~~~A~~vf~~m~~~~~v-t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t--~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMPEKTTV-AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT--FSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCCChh-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhccchHHH
Confidence 778889988888777654332211 111445556667775443 33334555443321 1133444556666554
Q ss_pred ---HHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHH-HHHcCCHHHHHhhcCC-CCC
Q 012683 204 ---LDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV-AAARGNREAVEILFPL-TSE 278 (458)
Q Consensus 204 ---~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~~~~v~~Ll~~-~~~ 278 (458)
...+++.|..++.. -.++.+..-+..|+++-+..+++.-.. +|..-++.|-. -+..|+.+-+.-+++. ...
T Consensus 345 ~~i~~~m~~~g~~~d~~-~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIV-ANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred HHHHHHHHHhCCCCCee-ehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556677666543 145667777888999888888875333 33344555443 4566765444333321 111
Q ss_pred CCCCCCcchhhHHHHHHhhc-cchhHHhhhhhcCCCC-CCCCCCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHH
Q 012683 279 DPSIPKWTVDGILEYMQSES-GKQLEETRNLKENNAP-KDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDA 356 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 356 (458)
. .. .+..+...++.+.. ....++...+.+.... ....|. ...+.-....+.+.|++++|.+.
T Consensus 421 g-~~--Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------------~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 421 G-VA--PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-------------AMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred C-CC--CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------------ccchHhHHHHHHhcCCHHHHHHH
Confidence 0 01 12222333332221 1223332222222111 000000 12355567788899999999999
Q ss_pred HHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----
Q 012683 357 YTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL----- 431 (458)
Q Consensus 357 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----- 431 (458)
+++. ...| +...|..+..++...|+++.|...+++++.++|++...|..++.+|...|++++|.+.++...+.
T Consensus 485 ~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 485 IRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 9874 3334 45678888888999999999999999999999999999999999999999999999998865432
Q ss_pred ---------------------CCCcHHHHHHHHHHHHHhhh
Q 012683 432 ---------------------DPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 432 ---------------------~p~~~~~~~~l~~~~~~~~~ 451 (458)
+|...+++..+..+..++++
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 35555667777777776654
No 237
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.52 E-value=2.5e-07 Score=86.93 Aligned_cols=90 Identities=30% Similarity=0.450 Sum_probs=79.9
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccc-----CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 190 TPLLSAVAAGSLTCLDLLIQAGANANIV-----AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264 (458)
Q Consensus 190 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-----~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 264 (458)
.-|.-|+...++..+-+|+.+|...... .+|+|+||+||..|++.+.++|+=+|+|+-.+|..|+|||.||-..|
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~ 705 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG 705 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence 3466778888888899999999765543 46899999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhcCCCCCC
Q 012683 265 NREAVEILFPLTSED 279 (458)
Q Consensus 265 ~~~~v~~Ll~~~~~~ 279 (458)
.-+++.+|+.+|..+
T Consensus 706 sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 706 SQECIDVLLQYGCPD 720 (749)
T ss_pred cHHHHHHHHHcCCCc
Confidence 999999999998643
No 238
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.52 E-value=9.7e-07 Score=85.10 Aligned_cols=120 Identities=15% Similarity=0.074 Sum_probs=102.5
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
+.+......+..+...|+.++|...+.++++ .|.++.+...++.+ ..++++++++.+++.++..|+++..++.+|.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl 337 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL 337 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4466678889999999999999999999999 55566666555555 45999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+...++|++|.++|+++++..|++.. +..++.++.++++.+++
T Consensus 338 ~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 338 LMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA 380 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999766 44789998888876653
No 239
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=2e-06 Score=79.15 Aligned_cols=121 Identities=15% Similarity=0.096 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-------------------------
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ------------------------- 383 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~------------------------- 383 (458)
.....++-+.+.++.|-..++..+||+.|.++..+-|++|.++..+|..|-+.|+
T Consensus 553 il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl 632 (840)
T KOG2003|consen 553 ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWL 632 (840)
T ss_pred HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHH
Confidence 3445677788888999899999999999999999999999999988888877665
Q ss_pred ---------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 384 ---------AEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 384 ---------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
+++|+.+|++|.-+.|+-.+-.+..+.|+.+.|+|+.|.+.|+...+..|.+.++..-|.++..-+
T Consensus 633 ~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 578899999999999999998899999999999999999999999999999999887777765544
No 240
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.50 E-value=1.5e-06 Score=81.84 Aligned_cols=88 Identities=20% Similarity=0.193 Sum_probs=45.8
Q ss_pred HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH
Q 012683 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF 418 (458)
Q Consensus 339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~ 418 (458)
-.+..+...++..+|+..+.+++...|.+..++...|..+++.++++.|+..+++|+.+.|+..+.|+.||.+|..+|+|
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 34444444444555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 012683 419 DEAANAFY 426 (458)
Q Consensus 419 ~~A~~~~~ 426 (458)
+.|+..+.
T Consensus 285 e~ALlaLN 292 (395)
T PF09295_consen 285 ENALLALN 292 (395)
T ss_pred HHHHHHHh
Confidence 55554444
No 241
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=2.6e-06 Score=75.32 Aligned_cols=109 Identities=12% Similarity=0.001 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-hHHHHH
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW-PKACYR 407 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~ 407 (458)
...+.|+-+.+.+..+..+.+.+.|...+.+|++.+|++..+-..+|.+....|+|++|++.++.+++-||.. +.+.-.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999987 577788
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
+..||..+|+.++.+..+.++.+..++...
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 999999999999999999999988876443
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=98.48 E-value=8.6e-07 Score=83.08 Aligned_cols=92 Identities=17% Similarity=0.131 Sum_probs=86.5
Q ss_pred hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683 347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFY 426 (458)
Q Consensus 347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 426 (458)
..+-.+|.+.-.+|++++|.|+.+++.+|.+..-.++++.|...|++|+.++|+++.+||..|.++...|+.++|.+.++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCcHHH
Q 012683 427 EGVTLDPENKEL 438 (458)
Q Consensus 427 ~a~~~~p~~~~~ 438 (458)
+|++++|-...+
T Consensus 397 ~alrLsP~~~~~ 408 (458)
T PRK11906 397 KSLQLEPRRRKA 408 (458)
T ss_pred HHhccCchhhHH
Confidence 999999976543
No 243
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.48 E-value=4.5e-07 Score=84.78 Aligned_cols=88 Identities=34% Similarity=0.508 Sum_probs=77.2
Q ss_pred cHHHHHHHcCCHHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683 58 GALHFAAREGKTDVCKYLLE-ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136 (458)
Q Consensus 58 t~L~~A~~~g~~~~v~~ll~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 136 (458)
-|||.++...+.+-+...+. .....++.+|..|.||||+|+..|+.+.+..|+..|+++..+|..|++|||.|+..|+.
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~ 101 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE 101 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence 45999999998876665433 23567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 012683 137 ELLTYLLSK 145 (458)
Q Consensus 137 ~~~~~Ll~~ 145 (458)
.++..++.+
T Consensus 102 q~i~~vlr~ 110 (560)
T KOG0522|consen 102 QIITEVLRH 110 (560)
T ss_pred HHHHHHHHH
Confidence 988888764
No 244
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.7e-06 Score=78.79 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=99.0
Q ss_pred ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683 348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE 427 (458)
Q Consensus 348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 427 (458)
.--++|-.+|++++++.|.+..+...+|..+...|+++.++..+++.+...|+.. .+..+|.++...+.+++|++.|..
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4457899999999999999999999999999999999999999999999999766 699999999999999999999999
Q ss_pred hhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 428 GVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 428 a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
|+.++|+++.....+..+.++.+..+..
T Consensus 497 ALr~dP~~~~sl~Gl~~lEK~~~~~DAT 524 (564)
T KOG1174|consen 497 ALRQDPKSKRTLRGLRLLEKSDDESDAT 524 (564)
T ss_pred HHhcCccchHHHHHHHHHHhccCCCCcc
Confidence 9999999999999999998888765543
No 245
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.47 E-value=8.4e-07 Score=81.99 Aligned_cols=85 Identities=29% Similarity=0.376 Sum_probs=77.0
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683 60 LHFAAREGKTDVCKYLLEELKLDVDTQDE-DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138 (458)
Q Consensus 60 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 138 (458)
||-+++.|+.++.-.||.- |+++|+.+. .|.||||+|+..|+..=+++|+=+|+|+...|..|.||+.+|-..||-++
T Consensus 137 LhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l 215 (669)
T KOG0818|consen 137 LHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL 215 (669)
T ss_pred HHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence 9999999999988888876 999998864 68999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhC
Q 012683 139 LTYLLSK 145 (458)
Q Consensus 139 ~~~Ll~~ 145 (458)
.+.|++.
T Consensus 216 aeRl~e~ 222 (669)
T KOG0818|consen 216 AERLVEI 222 (669)
T ss_pred HHHHHHH
Confidence 7777654
No 246
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.46 E-value=6.8e-07 Score=86.50 Aligned_cols=122 Identities=15% Similarity=0.180 Sum_probs=103.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--------
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRALR-------- 398 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------- 398 (458)
..+...|..|...++|.+|+..|++|+++ .|.-..++.++|.+|.+.|+|++|..+|++|+.+-
T Consensus 242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~ 321 (508)
T KOG1840|consen 242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH 321 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence 33447999999999999999999999985 34446789999999999999999999999999773
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC-----CC---cHHHHHHHHHHHHHhhhhhcCC
Q 012683 399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTLD-----PE---NKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 399 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~---~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
|.-...+..++.++...+++++|...|++++++. ++ -+..+.+++.++..+|++.+++
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence 3345677889999999999999999999998752 23 3677899999999999988764
No 247
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.46 E-value=2.1e-06 Score=84.61 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=81.0
Q ss_pred ccHHHHHHHHHHhhcc--CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q 012683 348 KDYLMAVDAYTQAIDF--DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAF 425 (458)
Q Consensus 348 ~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 425 (458)
.+.+++.+...+++.+ +|.++.+|.-+|..+...|++++|...+++|+.++|+ ..+|..+|.++...|++++|.+.|
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456777777787774 7788899999999999999999999999999999994 789999999999999999999999
Q ss_pred HHhhccCCCcHHHH
Q 012683 426 YEGVTLDPENKELV 439 (458)
Q Consensus 426 ~~a~~~~p~~~~~~ 439 (458)
++|+.++|.++..+
T Consensus 477 ~~A~~L~P~~pt~~ 490 (517)
T PRK10153 477 STAFNLRPGENTLY 490 (517)
T ss_pred HHHHhcCCCCchHH
Confidence 99999999988644
No 248
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.45 E-value=8.3e-07 Score=87.91 Aligned_cols=124 Identities=20% Similarity=0.232 Sum_probs=101.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEELK---LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA 131 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 131 (458)
.+.--...|+..|+.-.|+..++... .++|..|.-|.++|++|+.+.+.+++++|++.+... ..+|-+|+
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI 96 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI 96 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH
Confidence 34455778999999999999998754 467888999999999999999999999999986554 46899999
Q ss_pred HcCCHHHHHHHHhCCCCCC-----------CCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCC
Q 012683 132 GIGNIELLTYLLSKGAEVD-----------SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAET 185 (458)
Q Consensus 132 ~~~~~~~~~~Ll~~~~~~~-----------~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~ 185 (458)
..|..++++.++++-.... .-..+-|||.+|+..++.+|++.|+++|+.+....
T Consensus 97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH 161 (822)
T KOG3609|consen 97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH 161 (822)
T ss_pred HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence 9999999999998743321 01112299999999999999999999998876543
No 249
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.45 E-value=5.1e-07 Score=65.05 Aligned_cols=66 Identities=26% Similarity=0.315 Sum_probs=57.6
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC---C-C---chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD---P-S---DATLLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p-~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
..+..+...|..++..|+|++|+..|++++++. + + -..+++++|.++..+|++++|++.+++|+++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 457789999999999999999999999999762 2 2 2568999999999999999999999999986
No 250
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.42 E-value=9.8e-07 Score=78.91 Aligned_cols=84 Identities=27% Similarity=0.302 Sum_probs=70.9
Q ss_pred hhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012683 45 SKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGA 124 (458)
Q Consensus 45 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~ 124 (458)
.+.+....+..| -|..||+.|+++.|++|++. |.++|..|....+||.+|+..||.++|++||++|+-.+.-...|.
T Consensus 27 ~~s~~~~~~~f~--elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~ 103 (516)
T KOG0511|consen 27 KPSVPLKKVPFG--ELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD 103 (516)
T ss_pred CcccccccCchH--HHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc
Confidence 344444455543 49999999999999999996 999999999999999999999999999999999998877667787
Q ss_pred cHHHHHH
Q 012683 125 TALHHSA 131 (458)
Q Consensus 125 t~L~~A~ 131 (458)
.+++-|.
T Consensus 104 RC~YgaL 110 (516)
T KOG0511|consen 104 RCHYGAL 110 (516)
T ss_pred hhhhhhh
Confidence 7766554
No 251
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.42 E-value=2.2e-06 Score=80.76 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=98.8
Q ss_pred hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683 347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFY 426 (458)
Q Consensus 347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 426 (458)
.+++++|++.|++..+.+|+ +...+|.++..+++..+|++.+.++++..|.+...+...|..+...++++.|+...+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46899999999998887764 667799999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 427 EGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 427 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+++.+.|++.+.|..|+.++-++++++.+
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999987754
No 252
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=2.9e-06 Score=82.72 Aligned_cols=120 Identities=18% Similarity=0.036 Sum_probs=94.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHH----------------------------HHhhCCHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLC----------------------------WIRLGQAE 385 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~----------------------------~~~~~~~~ 385 (458)
.+.+-.....|...|+-.+|.+...+-++ .|+++.+|..+|.+ ....++|.
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 33344444455666666666666666666 45555555544422 22357899
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 386 HALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 386 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
++.++++..+.++|-....||++|.+..++++++.|.++|..++.++|++.++|++++-++-++++..+
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999998877654
No 253
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.40 E-value=1.4e-06 Score=84.39 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=99.1
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRAL------ 397 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 397 (458)
.....+...|..|+.+|+|++|+..+++|++. .|.-......+|..|..+++|.+|+..|.+|+.+
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 34455667999999999999999999999998 4554556667999999999999999999999976
Q ss_pred --CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhhhhhcC
Q 012683 398 --RPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD--------PENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 398 --~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.|....++.++|.+|...|+|++|..++++|+++- |+-+..+.+++.++..++++.++
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 45556788999999999999999999999998752 22344555666666655555443
No 254
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=1.8e-06 Score=80.83 Aligned_cols=110 Identities=25% Similarity=0.340 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh---hCCHHHHHHHHHHHHHhCCCChHH
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR---LGQAEHALADAKACRALRPDWPKA 404 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~ 404 (458)
-+..+.++..++.|+..|-.+.+..|+..|.+++...|....+|.++|.++++ .|+.-.|++++..|++++|...++
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 45566788899999999999999999999999999999999999999999988 458889999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
+|+++.++..++++.+|+++...+....|.+..
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 999999999999999999999888777885543
No 255
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=1.3e-06 Score=77.23 Aligned_cols=124 Identities=10% Similarity=0.101 Sum_probs=99.6
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.+.-+...+..+-.-+++++|++.|..+++++|.+.++.--.|.-|+.-++.+-|+++|++.+++.-.+++.|.++|.|.
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 34456667777777788888888888888888888888888888888888888888888888888888888888999999
Q ss_pred HHhhhHHHHHHHHHHhhcc--CCC-cHHHHHHHHHHHHHhhhhhcCC
Q 012683 413 RLLEKFDEAANAFYEGVTL--DPE-NKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~--~p~-~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
+-.++++-++.+|++|+.. +|+ -.+.|++++.+.-.+|++.-+.
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred HhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHH
Confidence 8899999999999888865 343 3678888888877777765443
No 256
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.38 E-value=9.1e-06 Score=66.15 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=105.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhc-cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--ChHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAID-FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD--WPKACYREGA 410 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~ 410 (458)
.+-....|+.+...|++.||...|++++. +.-.++..+..++.+.+..+++.+|...+++..+-+|. .++...-.|+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 34456788999999999999999999997 56788999999999999999999999999999999985 5788899999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
++-..|.+.+|...|+.++...|+ +++.-.++..+..+++..+
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhH
Confidence 999999999999999999998877 6666677777777776544
No 257
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.38 E-value=7.3e-07 Score=83.42 Aligned_cols=85 Identities=29% Similarity=0.441 Sum_probs=55.4
Q ss_pred cHHHHHHhCCCHHHHHHHH--hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcH
Q 012683 157 TPLIWAAGHGQQEAVKVLL--EHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGST 233 (458)
Q Consensus 157 t~l~~A~~~~~~~~~~~Ll--~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~ 233 (458)
.|+|+++.....+-+...+ +....++..|..|.||||+|+..|+...++.|+..|+++... +.|.++||.|+..|+.
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~ 101 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE 101 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence 3477776666655544422 223345566667777777777777777777777777777666 5677777777777777
Q ss_pred HHHHHHHH
Q 012683 234 EIIKCLLK 241 (458)
Q Consensus 234 ~iv~~Ll~ 241 (458)
.++..++.
T Consensus 102 q~i~~vlr 109 (560)
T KOG0522|consen 102 QIITEVLR 109 (560)
T ss_pred HHHHHHHH
Confidence 66666665
No 258
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.36 E-value=0.00055 Score=73.41 Aligned_cols=396 Identities=9% Similarity=0.066 Sum_probs=219.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCC-chhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCC
Q 012683 11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKG-LSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDED 89 (458)
Q Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~ 89 (458)
.+.....+-.-++.|+++....+++.+...+.. +.. ....+.+...+..|..+-+..+...... .+..
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~-------v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDK-------IYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchH-------HHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 344444555556789999888888876543211 100 0011234445667777766666655321 2222
Q ss_pred CC-cHHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCcHHH
Q 012683 90 GE-TPLLHAARQGHTETA----KYLFEHGANPTIPSNLGATALHHSAGIGNIELLT----YLLSKGAEVDSESDAGTPLI 160 (458)
Q Consensus 90 g~-t~L~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~~~~~~~~~~~~t~l~ 160 (458)
-. +.|...+..|+.+-+ +.+.+.|..++... ..+.+...+..|..+.+. .+.+.|..++... ..+.+.
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~t--ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT-ynaLI~ 515 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL--YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT-FGALID 515 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH-HHHHHH
Confidence 22 234455566765544 44456666554321 234556667778776544 4444454433211 124566
Q ss_pred HHHhCCCHHHH----HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCcHHHHHHhc
Q 012683 161 WAAGHGQQEAV----KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ------AGANANIVAGGATPLHIAADI 230 (458)
Q Consensus 161 ~A~~~~~~~~~----~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~------~g~~~~~~~~g~t~L~~A~~~ 230 (458)
..+..|+.+-. +.+.+.|..++... -.+.+...+..|.++-+..+++ .|..++.. --.+.+...+..
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT--YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-TynaLI~ay~k~ 592 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVV--FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-TVGALMKACANA 592 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHC
Confidence 67777876543 33444555443211 1234455567777765544432 23333322 123556677778
Q ss_pred CcHHHHHHHH----HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC-CCCCCCCCCcchhhHHHHHHhhccchhHHh
Q 012683 231 GSTEIIKCLL----KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL-TSEDPSIPKWTVDGILEYMQSESGKQLEET 305 (458)
Q Consensus 231 ~~~~iv~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (458)
|+.+-+..++ +.|..++.. ...+.+...+..|+.+-+.-++.. .......+.......+... .. .+..+..
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~--tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~-~k-~G~~eeA 668 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPE--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA-GH-AGDLDKA 668 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-Hh-CCCHHHH
Confidence 8876444444 455444322 112345555667775544433321 1111111111111122111 11 1222222
Q ss_pred ----hhhhcCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHh
Q 012683 306 ----RNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIR 380 (458)
Q Consensus 306 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~ 380 (458)
..+.+.+..++ ...+......|.+.|++++|++.|++..+.. ..+...|..+...|.+
T Consensus 669 ~~l~~eM~k~G~~pd-----------------~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 669 FEILQDARKQGIKLG-----------------TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHcCCCCC-----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 22232222221 2356777888999999999999999876542 2346789999999999
Q ss_pred hCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--CCCcHHHHHHHHHH
Q 012683 381 LGQAEHALADAKACRAL--RPDWPKACYREGAALRLLEKFDEAANAFYEGVTL--DPENKELVFAFREA 445 (458)
Q Consensus 381 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 445 (458)
.|++++|++.|++.... .| +...|..+..++...|++++|.+.+.+..+. .|+...+...++.+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999998765 45 4557888889999999999999999998864 55544444444433
No 259
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.36 E-value=2.8e-06 Score=76.06 Aligned_cols=89 Identities=20% Similarity=0.154 Sum_probs=78.1
Q ss_pred chhHHHhHHHHH-HhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC---cHHHH
Q 012683 367 DATLLSNRSLCW-IRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPE---NKELV 439 (458)
Q Consensus 367 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~ 439 (458)
+...+|..|..+ .+.|+|++|+..|++.++..|++ +.++|.+|.+|+..|++++|+..|+++++..|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457778888876 56799999999999999999998 589999999999999999999999999988887 47888
Q ss_pred HHHHHHHHHhhhhhcC
Q 012683 440 FAFREAVEAGRKFHGT 455 (458)
Q Consensus 440 ~~l~~~~~~~~~~~~~ 455 (458)
+.++.++..+++..++
T Consensus 221 ~klg~~~~~~g~~~~A 236 (263)
T PRK10803 221 FKVGVIMQDKGDTAKA 236 (263)
T ss_pred HHHHHHHHHcCCHHHH
Confidence 8899999888776543
No 260
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=3.9e-06 Score=69.00 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
+.++--+-++|..+.+.+.|+.||..+++||++.|.+-.++..||.+|.++.+|++|+.+|.+.+.++|....+--..++
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 45667788999999999999999999999999999999999999999999999999999999999999988766554444
Q ss_pred HHHH
Q 012683 411 ALRL 414 (458)
Q Consensus 411 ~~~~ 414 (458)
+--.
T Consensus 211 l~~~ 214 (271)
T KOG4234|consen 211 LPPK 214 (271)
T ss_pred cCHH
Confidence 4333
No 261
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.33 E-value=5.7e-06 Score=79.62 Aligned_cols=141 Identities=9% Similarity=-0.015 Sum_probs=85.9
Q ss_pred HHHhhccchhHHhhhhhcCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHH
Q 012683 293 YMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLS 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 372 (458)
|...+..+.+..+...++.-... .+.+-.+|-.+..-|+-++|.+....+++.++.+...|.
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eH------------------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwH 79 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEH------------------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWH 79 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCcc------------------chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHH
Confidence 33444555666666666633222 233445666666666666666666666666666666666
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 373 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
-+|.++..-.+|++|++.|+.|+.++|++...++.++..+.++++|+.....-.+.+++.|.....|..++....-.++
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666555554444
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.33 E-value=1.4e-06 Score=54.68 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=27.4
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
.+++.+|.+|..+|++++|++.|+++++.+|+++.+++.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666666666666666666666666666666666654
No 263
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.32 E-value=2.7e-06 Score=85.50 Aligned_cols=115 Identities=20% Similarity=0.126 Sum_probs=101.2
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..+..+|-.+...+++.+|+..|+.|++.+|.+..+|..+|.+|...|+|..|++.|.+|..++|.+.-+.|..|.+...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 44566888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
.|+|.+|+..+...+.-..........++.++-++
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999988876655556666666655544
No 264
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.31 E-value=3e-06 Score=84.07 Aligned_cols=124 Identities=28% Similarity=0.360 Sum_probs=98.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 012683 88 EDGETPLLHAARQGHTETAKYLFEHG----ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAA 163 (458)
Q Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~~~----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~ 163 (458)
..+.--...|+..|+.-.|+..++.. .+++..|..|+++|++|+.+.+.++.++|++.+... +.+|.+|+
T Consensus 23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~------gdALL~aI 96 (822)
T KOG3609|consen 23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE------GDALLLAI 96 (822)
T ss_pred chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc------chHHHHHH
Confidence 34556688999999999999888643 457788999999999999999999999999977554 57899999
Q ss_pred hCCCHHHHHHHHhcCCCCC----------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 012683 164 GHGQQEAVKVLLEHHANPN----------AETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV 217 (458)
Q Consensus 164 ~~~~~~~~~~Ll~~~~~~~----------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~ 217 (458)
..|..++++.++.+..... ..-..+.||+.+|+..+++++++.|+.+|+.+...
T Consensus 97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P 160 (822)
T KOG3609|consen 97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP 160 (822)
T ss_pred HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence 9999999999998743321 12234568888888888888888888887766544
No 265
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.30 E-value=7.5e-07 Score=52.07 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=21.3
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhhhHHHHH
Q 012683 391 AKACRALRPDWPKACYREGAALRLLEKFDEAA 422 (458)
Q Consensus 391 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~ 422 (458)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666664
No 266
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4.5e-06 Score=76.10 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=95.0
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..++.++-.|..+|.+++|..|+.+-.++|+.+|.+..++...|.++..+|+.++|+-.|+.|..+-|...+.|-.+-.+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34556778888888888999999988999999998888888889999999999999999999999998888888888888
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFR 443 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 443 (458)
|...|++.||.-.-+.+++.-|+++.....++
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 88888888888887778777777777777765
No 267
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.26 E-value=2.8e-06 Score=85.36 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=102.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------------------------------------hHHHhHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------------------------------------TLLSNRSLC 377 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------------------------~~~~~~a~~ 377 (458)
+-.+--.|..|..--+...|..+|++|.++++.+. ..|..+|..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 34455666666666677778888888888877653 356778999
Q ss_pred HHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 378 WIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 378 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
|.+.+++..|+.+|+.|++.+|.+..+|..+|.+|-..|+|..|++.|.+|..++|.+.-..+-.+.+...+|++.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888877654
No 268
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.24 E-value=2.3e-05 Score=71.55 Aligned_cols=117 Identities=12% Similarity=0.002 Sum_probs=83.3
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG--QAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
...-..+.+++.++++.|.+.++.+-+.+.+..-...--|.+.+..| .+.+|...|++..+..|.++..+..+|.++.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33445667788888888888888887776554433333344444444 5888888888887777788888888888888
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
.+|+|++|.+.+++++..+|+++++..++..+..-+|+.
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888888888888887776666655
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.24 E-value=1.9e-06 Score=54.00 Aligned_cols=43 Identities=30% Similarity=0.365 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444 (458)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 444 (458)
|.+++.+|.+|..+|++++|++.|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4689999999999999999999999999999999999998875
No 270
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=1.5e-05 Score=82.10 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=99.7
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-----------------
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL----------------- 397 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------------- 397 (458)
.+++.+|.+|-+.|++++|+..|+++++++|+++.+..++|..|... +.++|+..+.+|++.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999 999999999999854
Q ss_pred ---CCCChHHHHH--------HH------------HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 398 ---RPDWPKACYR--------EG------------AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 398 ---~p~~~~~~~~--------~a------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
+|++...++. ++ ..|...++|++++..++.+++++|.+..+.+.+..++.+
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 4554443221 23 677788899999999999999999999999999999883
No 271
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.23 E-value=8e-06 Score=78.69 Aligned_cols=116 Identities=9% Similarity=-0.112 Sum_probs=85.4
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEK 417 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~ 417 (458)
...+....-.+..++|+..++++++..|+..-+|..+|+++.++++.+.|...|...++..|+.+..|.-++..-...|.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 33444445556777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 418 FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 418 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
.-.|...+.++...||++...|...-++..+.|...
T Consensus 735 ~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 735 LVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 777777777777777777777776666666655544
No 272
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.21 E-value=9.7e-07 Score=51.58 Aligned_cols=34 Identities=29% Similarity=0.556 Sum_probs=31.9
Q ss_pred HHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHH
Q 012683 356 AYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALA 389 (458)
Q Consensus 356 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 389 (458)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999963
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.20 E-value=2.7e-06 Score=50.04 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=20.3
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPD 400 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 400 (458)
.+|+++|.++..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 274
>PLN03077 Protein ECB2; Provisional
Probab=98.18 E-value=0.0029 Score=67.86 Aligned_cols=393 Identities=12% Similarity=0.012 Sum_probs=223.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhccc-CCCcHHHHHHHcCCHHHHHHHHHh---CCCCCCCCCCCCC
Q 012683 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDA-NKRGALHFAAREGKTDVCKYLLEE---LKLDVDTQDEDGE 91 (458)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~ 91 (458)
.-+..-++.|+++....+++.... .|. ..++.+.-.+..|+.+-+..+++. .|..++... -.
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~------------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--~~ 393 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMET------------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--IA 393 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCC------------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--HH
Confidence 334555677999999988887432 111 234556666778887654444432 144443321 12
Q ss_pred cHHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCC
Q 012683 92 TPLLHAARQGHTETA----KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQ 167 (458)
Q Consensus 92 t~L~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~ 167 (458)
+.|...+..|..+.. ..+++.|...+.. ...+.+...++.|+.+-+..+++.=.+.+... ..+.+...+.+|.
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~--~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs-~~~mi~~~~~~g~ 470 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVV--VANALIEMYSKCKCIDKALEVFHNIPEKDVIS-WTSIIAGLRLNNR 470 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchH--HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeee-HHHHHHHHHHCCC
Confidence 334444556765544 4444566554321 22344566678899888887776543322111 1133444455665
Q ss_pred HHH-HHHHHhcCCCCCCCCCCCC-cHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHH
Q 012683 168 QEA-VKVLLEHHANPNAETEDNI-TPLLSAVAAGSLTCL----DLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK 241 (458)
Q Consensus 168 ~~~-~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~----~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~ 241 (458)
.+- ++++-+--..+ ..|.... +.|...+..|.++.. ..+++.|...+.. -++..+..-++.|+.+-...+.+
T Consensus 471 ~~eA~~lf~~m~~~~-~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~-~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 471 CFEALIFFRQMLLTL-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred HHHHHHHHHHHHhCC-CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce-echHHHHHHHHcCCHHHHHHHHH
Confidence 432 22222211111 1222222 233334455665544 4455667666543 24566777788898887777766
Q ss_pred cCCCCCCCCCCCCcHHH-HHHHcCCHHHHHhhcC----CCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCC-CC
Q 012683 242 AGADPNVTDEDGQKPIQ-VAAARGNREAVEILFP----LTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNA-PK 315 (458)
Q Consensus 242 ~g~~~~~~~~~g~t~l~-~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 315 (458)
.- .+|...++.+- ..+..|+.+-+.-+++ .+-.+ + .......+. .... ....++...+.+... ..
T Consensus 549 ~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d--~~T~~~ll~-a~~~-~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 549 SH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-D--EVTFISLLC-ACSR-SGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred hc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C--cccHHHHHH-HHhh-cChHHHHHHHHHHHHHHh
Confidence 42 34444455544 3456777654444332 22111 1 111111221 1111 223333322222211 00
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH
Q 012683 316 DKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR 395 (458)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 395 (458)
... + ..+.+.-....+.+.|++++|.+.+++. ...|+ ..+|..+-.++..-++.+.|....++++
T Consensus 620 gi~---------P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 620 SIT---------P----NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred CCC---------C----chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 000 0 1245677888899999999999999884 45555 5666666666777899999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc----c----------------------CCCcHHHHHHHHHHHHHh
Q 012683 396 ALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT----L----------------------DPENKELVFAFREAVEAG 449 (458)
Q Consensus 396 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~----------------------~p~~~~~~~~l~~~~~~~ 449 (458)
+++|+++..|..++.+|...|+|++|.+..+.--+ . .|...+++..+..+..++
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 764 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM 764 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765422 2 355567777777777776
Q ss_pred hh
Q 012683 450 RK 451 (458)
Q Consensus 450 ~~ 451 (458)
++
T Consensus 765 ~~ 766 (857)
T PLN03077 765 KA 766 (857)
T ss_pred Hh
Confidence 54
No 275
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.18 E-value=2.8e-05 Score=67.44 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=94.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCC-----------HHHHHHHHHHHHHhCC
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQ-----------AEHALADAKACRALRP 399 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~a~~~~p 399 (458)
.++.+..|..+++.|+|.+|+..|++.++..|+++ .+++.+|.++.++.+ ..+|+..|+..++.-|
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 45678999999999999999999999999999875 589999999877643 4589999999999999
Q ss_pred CChHH-----------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHhhhhh
Q 012683 400 DWPKA-----------------CYREGAALRLLEKFDEAANAFYEGVTLDPENK---ELVFAFREAVEAGRKFH 453 (458)
Q Consensus 400 ~~~~~-----------------~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~ 453 (458)
++.-+ -+..|.-|.+.|.|..|+..++.+++..|+.+ ++...+...+.+++...
T Consensus 122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 97432 25689999999999999999999999999875 55666666666666554
No 276
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.16 E-value=3.6e-05 Score=68.45 Aligned_cols=122 Identities=15% Similarity=0.071 Sum_probs=99.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCC------------------HHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQ------------------AEHALADAK 392 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~------------------~~~A~~~~~ 392 (458)
..+....|..+++.++|++|+..|++.++..|+++ .+++.+|.++..+++ ..+|+..|+
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~ 148 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS 148 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHH
Confidence 44578999999999999999999999999999874 689999998765541 357889999
Q ss_pred HHHHhCCCCh---HH--------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhhhh
Q 012683 393 ACRALRPDWP---KA--------------CYREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVEAGRKF 452 (458)
Q Consensus 393 ~a~~~~p~~~---~~--------------~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~ 452 (458)
+.++.-|++. ++ -+..|.-|.+.|.|..|+.-++..++..|+. +++...+...+..+|..
T Consensus 149 ~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 149 KLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 9999999873 11 2457788999999999999999999988875 56677777777776665
Q ss_pred hcC
Q 012683 453 HGT 455 (458)
Q Consensus 453 ~~~ 455 (458)
+++
T Consensus 229 ~~a 231 (243)
T PRK10866 229 AQA 231 (243)
T ss_pred HHH
Confidence 543
No 277
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.16 E-value=3.2e-06 Score=75.22 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=78.6
Q ss_pred HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
.-.+|.-|++.|.|++|++.|.+++.++|.++..|.++|.+|+++..|..|..+...|+.++.....++...+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999888888888888888887
Q ss_pred hhhcCC
Q 012683 451 KFHGTD 456 (458)
Q Consensus 451 ~~~~~~ 456 (458)
...+++
T Consensus 180 ~~~EAK 185 (536)
T KOG4648|consen 180 NNMEAK 185 (536)
T ss_pred hHHHHH
Confidence 766553
No 278
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.16 E-value=4.2e-05 Score=75.07 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=63.4
Q ss_pred HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 370 LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
+++.+|++|...|++++|+.++++||...|+.++.|+.+|.++...|++.+|.+++..|-.+++.|.-+.......+.+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 34666777777777777777777777777777777777777777777777777777777777777777766666666666
Q ss_pred hhhhcC
Q 012683 450 RKFHGT 455 (458)
Q Consensus 450 ~~~~~~ 455 (458)
++..++
T Consensus 276 ~~~e~A 281 (517)
T PF12569_consen 276 GRIEEA 281 (517)
T ss_pred CCHHHH
Confidence 655543
No 279
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.11 E-value=5.4e-05 Score=73.21 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=86.4
Q ss_pred hHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHH
Q 012683 342 DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEA 421 (458)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A 421 (458)
...+...+|+.|...|.+|-...|+ ..+|+..+....-++..++|++.++++++.-|++++.|+.+|+++...++.+.|
T Consensus 626 Kle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred HHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHH
Confidence 3344555666666666666554433 566666677777788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 422 ANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 422 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
.+.|...++.-|+..-.|..++.+.++.+
T Consensus 705 R~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 705 REAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 99999999999999999999888877664
No 280
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.10 E-value=1.1e-05 Score=79.08 Aligned_cols=99 Identities=15% Similarity=0.024 Sum_probs=89.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
.-.+.-.++-+-..|++++|++...+||+..|+.+++|+..|.++-.+|++.+|.+..+.|..+|+.+--.-...+.-+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 34567778888899999999999999999999999999999999999999999999999999999988876677788889
Q ss_pred HhhhHHHHHHHHHHhhccC
Q 012683 414 LLEKFDEAANAFYEGVTLD 432 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~ 432 (458)
+.|+.++|.+.+...-+-+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999987775543
No 281
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.10 E-value=4.4e-06 Score=49.10 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 435 (458)
+++|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 282
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.10 E-value=0.0021 Score=69.10 Aligned_cols=331 Identities=15% Similarity=0.050 Sum_probs=185.4
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHH
Q 012683 98 ARQGHTETAKYLFEHGANPTIPSNLGA-TALHHSAGIGNIELLT----YLLSKGAEVDSESDAGTPLIWAAGHGQQEAVK 172 (458)
Q Consensus 98 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~----~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~ 172 (458)
+..|..+-...+.+.-.. .+..-. +.|...+..|+.+-+. .+.+.|...+... ..+.+...+..|..+.+.
T Consensus 417 ~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~t-ynsLI~~y~k~G~vd~A~ 492 (1060)
T PLN03218 417 KKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL-YTTLISTCAKSGKVDAMF 492 (1060)
T ss_pred HHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhCcCHHHHH
Confidence 345655554444443322 222222 3455556677765444 4445554432111 124566677788776544
Q ss_pred HH----HhcCCCCCCCCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHH---
Q 012683 173 VL----LEHHANPNAETEDNITPLLSAVAAGSLTC----LDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK--- 241 (458)
Q Consensus 173 ~L----l~~~~~~~~~~~~~~t~l~~a~~~~~~~~----~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~--- 241 (458)
.+ .+.|..++... -.+.+...+..|+++- ++.+.+.|..++... -++.+...+..|..+-+..+++
T Consensus 493 ~vf~eM~~~Gv~PdvvT--ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT-YnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHT--FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV-FNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33 34554443211 1234555677777653 455556676666431 2355667777788765555543
Q ss_pred ---cCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCCC
Q 012683 242 ---AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKA 318 (458)
Q Consensus 242 ---~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (458)
.|..++.. .-.+-+...+..|+.+-+.-+++.-......++....+.+-...... ...+....+.+.....+..
T Consensus 570 ~~~~gi~PD~v--TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 570 AETHPIDPDHI--TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HhcCCCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Confidence 23333321 12244556677788665544432211111111111111111112222 2233332222221111100
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 319 PMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
+ ....+......+.+.|++++|.+.|.+..+.. +.+...|..+..+|.+.|++++|.+.|++....
T Consensus 647 ---------P----D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 647 ---------P----DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred ---------C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 0 12345566778889999999999999998864 446788999999999999999999999998764
Q ss_pred --CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHhhhhh
Q 012683 398 --RPDWPKACYREGAALRLLEKFDEAANAFYEGVT--LDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 398 --~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
.| +...|..+...|.+.|++++|++.|++... ..|+...+...+ ..+.+.++.+
T Consensus 714 g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL-~a~~k~G~le 771 (1060)
T PLN03218 714 KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL-VASERKDDAD 771 (1060)
T ss_pred CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHCCCHH
Confidence 45 567799999999999999999999998664 456655544444 4445455443
No 283
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.09 E-value=0.00011 Score=60.06 Aligned_cols=98 Identities=18% Similarity=0.081 Sum_probs=79.6
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----------------------hhHHHhHHHHHHhhCCHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----------------------ATLLSNRSLCWIRLGQAEHALA 389 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~ 389 (458)
...+.+...|......++.+.+++.+.+++.+...+ ..+...++..+...|++++|+.
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 345666777888888999999999999999875332 1355567888889999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 012683 390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGV 429 (458)
Q Consensus 390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 429 (458)
.+++++.++|.+-.+|..+-.+|...|++.+|++.|+++.
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998874
No 284
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.08 E-value=1e-05 Score=65.62 Aligned_cols=70 Identities=23% Similarity=0.305 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 012683 80 KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG-ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149 (458)
Q Consensus 80 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 149 (458)
+.+||.+|..||||++.|+..|+.+.+.||+.+| +.+...|..|.+++.+|-..|+.++++.|.+.-.+-
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et 72 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET 72 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence 4578889999999999999999999999999999 788888999999999999999999999888864443
No 285
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=2.4e-05 Score=70.16 Aligned_cols=113 Identities=20% Similarity=0.156 Sum_probs=95.3
Q ss_pred hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH--------------HhC-------
Q 012683 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR--------------ALR------- 398 (458)
Q Consensus 340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--------------~~~------- 398 (458)
.|-.+|..|+|++|+..|+.+...+..+..++.++|.|++-+|.|.+|.....+|- +++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 47789999999999999999999877788999999999999999999998776653 121
Q ss_pred -----CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 399 -----PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 399 -----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
.+..+-...+|.+++..-.|++|++.|++.+..+|+.......++.|+.++.=+
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence 112344567899999999999999999999999999999999999998877543
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.05 E-value=1.1e-05 Score=47.35 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=17.5
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPD 400 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 400 (458)
.+|+.+|.++..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.01 E-value=9.4e-06 Score=47.64 Aligned_cols=34 Identities=35% Similarity=0.549 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 435 (458)
+++++.+|.++...|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
No 288
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.00 E-value=4.6e-05 Score=69.56 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=78.5
Q ss_pred ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH-HHHHHHHH
Q 012683 348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF-DEAANAFY 426 (458)
Q Consensus 348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~ 426 (458)
+.+.+|.-.|++..+..|.++.++..+|.|++.+|+|++|.+.+.+|+..+|+++.++.+++.+...+|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 47999999999988888889999999999999999999999999999999999999999999999999999 55666777
Q ss_pred HhhccCCCcHHHH
Q 012683 427 EGVTLDPENKELV 439 (458)
Q Consensus 427 ~a~~~~p~~~~~~ 439 (458)
+....+|+++-..
T Consensus 261 qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 261 QLKQSNPNHPLVK 273 (290)
T ss_dssp HCHHHTTTSHHHH
T ss_pred HHHHhCCCChHHH
Confidence 7777899987654
No 289
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.98 E-value=6.7e-06 Score=83.96 Aligned_cols=81 Identities=32% Similarity=0.466 Sum_probs=46.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135 (458)
Q Consensus 56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 135 (458)
|.|+||.|+..|..-++++|++. |+++|..+..|.||+|.+...|+...+..|+++|++.+..+..|.+++++|....+
T Consensus 656 ~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~ 734 (785)
T KOG0521|consen 656 GCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN 734 (785)
T ss_pred ccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence 45556666666666556555555 55555555556666666666666555555556665555555556666655544433
Q ss_pred HH
Q 012683 136 IE 137 (458)
Q Consensus 136 ~~ 137 (458)
.+
T Consensus 735 ~d 736 (785)
T KOG0521|consen 735 AD 736 (785)
T ss_pred cc
Confidence 33
No 290
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.97 E-value=4.2e-05 Score=58.45 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=67.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc-H---HHHHHHHHHHHH
Q 012683 373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN-K---ELVFAFREAVEA 448 (458)
Q Consensus 373 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~---~~~~~l~~~~~~ 448 (458)
.-|.+....|+.+.|++-|.+++.+.|..+.+|.++++++...|+.++|++++.+|+.+..+. . +++...+.++..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 357788889999999999999999999999999999999999999999999999999985443 2 345556666666
Q ss_pred hhhhh
Q 012683 449 GRKFH 453 (458)
Q Consensus 449 ~~~~~ 453 (458)
+++-+
T Consensus 128 ~g~dd 132 (175)
T KOG4555|consen 128 LGNDD 132 (175)
T ss_pred hCchH
Confidence 65543
No 291
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.1e-05 Score=72.36 Aligned_cols=126 Identities=18% Similarity=0.297 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC-----------C--------chhHHHhHHHHHHhhCCHHHHHH
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP-----------S--------DATLLSNRSLCWIRLGQAEHALA 389 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~A~~ 389 (458)
.....++..++.|+..|++++|.+|...|.++.+.-. + -..++.+.+.+-++++.+..|+.
T Consensus 217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF 296 (372)
T ss_pred hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence 4456677888899999999999999999999886421 1 12467789999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
....++..++...++||+++..+..+.++++|+++++.+....|++.++...+..+.........
T Consensus 297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888777666554443
No 292
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.93 E-value=2.6e-05 Score=63.41 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCC
Q 012683 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG-ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251 (458)
Q Consensus 178 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~ 251 (458)
+.++|.+|..|||++++|+.-|+.+.+.+|+.+| +.+... ..|.+++.+|-+.|..++|..|.++-.+-+..+.
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n 77 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN 77 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence 3567788888888888888888888888888888 666666 6688888888888888888888876555444433
No 293
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0001 Score=70.57 Aligned_cols=115 Identities=19% Similarity=0.164 Sum_probs=65.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
.+++..-+.+-..++|++|.....+.+...|++..++...-.|.++.++|++|+...++=..+...+. ..|..|.|+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence 56777777777888888888888888888777766666555666666666666533322221111111 11455555555
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
++..++|+..++ -+++.+..+....++++.++++++
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~yd 127 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYD 127 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHH
Confidence 555555555555 223444444445555555555444
No 294
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.90 E-value=1.1e-05 Score=82.33 Aligned_cols=88 Identities=40% Similarity=0.548 Sum_probs=73.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 186 EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264 (458)
Q Consensus 186 ~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 264 (458)
..|.|+||.|+..+...++++|++.|+++|.. ..|+||+|.+...|+...+..|+++|++++..+.+|.+|+++|....
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~ 733 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA 733 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence 45688899999999999999999999988877 67889999999999999999999999999999999999999887666
Q ss_pred CHHHHHhhc
Q 012683 265 NREAVEILF 273 (458)
Q Consensus 265 ~~~~v~~Ll 273 (458)
+.+++-++.
T Consensus 734 ~~d~~~l~~ 742 (785)
T KOG0521|consen 734 NADIVLLLR 742 (785)
T ss_pred cccHHHHHh
Confidence 666555443
No 295
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.89 E-value=7.6e-05 Score=65.35 Aligned_cols=85 Identities=20% Similarity=0.206 Sum_probs=78.0
Q ss_pred HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHH
Q 012683 371 LSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFRE 444 (458)
Q Consensus 371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~ 444 (458)
.|+.|.-+++.|+|.+|...|..=++..|++ +.++|-||.+++..|+|++|...|..+++..|+. +++.+.++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 8999999999999999999999999999976 6899999999999999999999999999988865 688999999
Q ss_pred HHHHhhhhhcC
Q 012683 445 AVEAGRKFHGT 455 (458)
Q Consensus 445 ~~~~~~~~~~~ 455 (458)
++..+++.+++
T Consensus 224 ~~~~l~~~d~A 234 (262)
T COG1729 224 SLGRLGNTDEA 234 (262)
T ss_pred HHHHhcCHHHH
Confidence 99998876654
No 296
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.87 E-value=0.00021 Score=53.67 Aligned_cols=94 Identities=22% Similarity=0.285 Sum_probs=74.8
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCC------------chhHHHhHHHHHHhhCCHHHHHHHHHHHHH-------h
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPS------------DATLLSNRSLCWIRLGQAEHALADAKACRA-------L 397 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-------~ 397 (458)
....|...++.|.|++|...|.+|++...+ +.-++-.++.++..+|+|++++...++++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 445677778899999999999999986422 345677889999999999999999988884 3
Q ss_pred CCC----ChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 398 RPD----WPKACYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 398 ~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
+.+ |..+-+.+|.++..+|+.++|+..|+.+.+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 444 567778999999999999999999998864
No 297
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.86 E-value=0.00056 Score=59.42 Aligned_cols=102 Identities=22% Similarity=0.234 Sum_probs=76.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH---HHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK---ACYR 407 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~ 407 (458)
+..|.+.|...++.|+|++|+..|++.....|.. ..+...++.++++.+++++|+..+++=+++.|+++. ++|-
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 5678999999999999999999999999887765 468889999999999999999999999999888753 3444
Q ss_pred HHHHHHHh--------hhHHHHHHHHHHhhccCCCc
Q 012683 408 EGAALRLL--------EKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 408 ~a~~~~~~--------~~~~~A~~~~~~a~~~~p~~ 435 (458)
+|.+++.. .--.+|...|+..+...|+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 45444332 22344555555555555543
No 298
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.85 E-value=7.8e-05 Score=48.14 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
+.+|.+|..++++|+|++|+.+.+.+++.+|++.++......+..++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4577888888888888888888888888888888888877777766643
No 299
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.85 E-value=3.5e-05 Score=78.46 Aligned_cols=128 Identities=22% Similarity=0.132 Sum_probs=94.0
Q ss_pred hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcHH
Q 012683 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF-EHGANPTIPSNLGATAL 127 (458)
Q Consensus 49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L 127 (458)
.......|.|.+|.++..+...+++.+++..+......+.+|+..+|+++ .++.++.-+++ -.|..++++|..|+|||
T Consensus 567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL 645 (975)
T KOG0520|consen 567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPL 645 (975)
T ss_pred cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCccc
Confidence 34455678899999999999999999888545555566777888888844 44555544443 46788899999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCC------CC-CCCcHHHHHHhCCCHHHHHHHHhc
Q 012683 128 HHSAGIGNIELLTYLLSKGAEVDS------ES-DAGTPLIWAAGHGQQEAVKVLLEH 177 (458)
Q Consensus 128 ~~A~~~~~~~~~~~Ll~~~~~~~~------~~-~~~t~l~~A~~~~~~~~~~~Ll~~ 177 (458)
|+|...|+..++..|++.|.+... .. .+.|+-.+|-.+|+..+.-+|-+.
T Consensus 646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 999999999999999977655421 11 133777778788888777777665
No 300
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.85 E-value=4.6e-05 Score=68.53 Aligned_cols=66 Identities=24% Similarity=0.377 Sum_probs=58.9
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 012683 91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156 (458)
Q Consensus 91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 156 (458)
.--|..||+.|..+.|++|++.|.++|..|.+..+||.+|+-.||.+++++|+++|+-.+.....|
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G 102 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDG 102 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCc
Confidence 345889999999999999999999999999999999999999999999999999998765444333
No 301
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.6e-05 Score=66.18 Aligned_cols=81 Identities=7% Similarity=0.080 Sum_probs=74.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 374 RSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 374 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
-|..++...+|..|+..|.+||.++|..+..|-+++.+|.++.+|+....+-++|+++.|+....++-++.++.+.+.+.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35677778899999999999999999999999999999999999999999999999999999999999999998887665
Q ss_pred c
Q 012683 454 G 454 (458)
Q Consensus 454 ~ 454 (458)
+
T Consensus 96 e 96 (284)
T KOG4642|consen 96 E 96 (284)
T ss_pred H
Confidence 4
No 302
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.00022 Score=65.29 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=89.3
Q ss_pred HHHHHHHHhhhHHHhh-ccHHHHHHHHHHhhccCCC------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC----
Q 012683 332 KKAAEAKARGDEAFKQ-KDYLMAVDAYTQAIDFDPS------DATLLSNRSLCWIRLGQAEHALADAKACRALRPD---- 400 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---- 400 (458)
.-+..+.+.|..+... |++++|++.|++|+++... -..++...|.++.++|+|++|+..|+++....-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 5577888999999999 9999999999999997322 1357789999999999999999999999875322
Q ss_pred --Ch-HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhhh
Q 012683 401 --WP-KACYREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVEAGRK 451 (458)
Q Consensus 401 --~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~ 451 (458)
.. +.++..+.++...||+-.|.+.|.+....+|.. .+.. .+..+.....+
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~-~~~~l~~A~~~ 247 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK-FLEDLLEAYEE 247 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH-HHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH-HHHHHHHHHHh
Confidence 12 345678889999999999999999999998853 3333 34444444443
No 303
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.80 E-value=3e-05 Score=64.77 Aligned_cols=86 Identities=29% Similarity=0.326 Sum_probs=77.6
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
.+..++.||..|-.+|-+.-|.-+|++++.+.|+-+.++..+|.-+...|+|+.|.+.|.-.++++|.+.-++.+.+..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 46778899999999999999999999999999999999999999999999999999999999999999998888877665
Q ss_pred HHhhhh
Q 012683 447 EAGRKF 452 (458)
Q Consensus 447 ~~~~~~ 452 (458)
.-.+++
T Consensus 144 YY~gR~ 149 (297)
T COG4785 144 YYGGRY 149 (297)
T ss_pred eecCch
Confidence 544443
No 304
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.79 E-value=0.00013 Score=57.67 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=71.8
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH---HHH
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPD---WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE---LVF 440 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~ 440 (458)
.+..++..|...++.|+|.+|++.|+.+...-|. ...+.+.+|.+|+..++|++|+..+++.++++|+++. ++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4678999999999999999999999999998775 4689999999999999999999999999999998864 455
Q ss_pred HHHHHHHHhh
Q 012683 441 AFREAVEAGR 450 (458)
Q Consensus 441 ~l~~~~~~~~ 450 (458)
..+.+...+.
T Consensus 89 ~~gL~~~~~~ 98 (142)
T PF13512_consen 89 MRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 305
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.78 E-value=0.0008 Score=61.67 Aligned_cols=125 Identities=11% Similarity=0.032 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD-WPKACYRE 408 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~ 408 (458)
...+++.....|..-+..|+|.+|.....++-+..+.....|..-|.+--++|+++.|=+++.+|-++.++ ....+..+
T Consensus 80 Krrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltr 159 (400)
T COG3071 80 KRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTR 159 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHH
Confidence 34677888889999999999999999999988888777777888888999999999999999999999443 45668899
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
+..+...|+++.|...+.++++..|.+++......+++.+.|++++
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999999999999999999999998888754
No 306
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00047 Score=66.14 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=89.2
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-------------------
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR------------------- 398 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------------- 398 (458)
++++.++|+.+..++|+..++ ..++.+..+...+|++++++|+|++|++.|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 789999999999999999998 5666777899999999999999999999999885322
Q ss_pred -----------CC-ChHHHHHHHHHHHHhhhHHHHHHHHHHhhc--------cCCCcHH-------HHHHHHHHHHHhhh
Q 012683 399 -----------PD-WPKACYREGAALRLLEKFDEAANAFYEGVT--------LDPENKE-------LVFAFREAVEAGRK 451 (458)
Q Consensus 399 -----------p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--------~~p~~~~-------~~~~l~~~~~~~~~ 451 (458)
|. ..+.+|+.|.++...|+|.+|++.+++|++ -+-++.+ ++..++-++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 457789999999999999999999999932 2222233 34455556666666
Q ss_pred hhcC
Q 012683 452 FHGT 455 (458)
Q Consensus 452 ~~~~ 455 (458)
..++
T Consensus 240 t~ea 243 (652)
T KOG2376|consen 240 TAEA 243 (652)
T ss_pred hHHH
Confidence 5543
No 307
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.72 E-value=0.00046 Score=63.51 Aligned_cols=104 Identities=22% Similarity=0.390 Sum_probs=88.8
Q ss_pred CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC--------c----------hhHHHhHHHHHHhhCCHHHH
Q 012683 326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS--------D----------ATLLSNRSLCWIRLGQAEHA 387 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~----------~~~~~~~a~~~~~~~~~~~A 387 (458)
..+...+..+.....|..+|++++|..|+.-|..|+++... . ..+--.+..||+++++.+.|
T Consensus 168 ~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlA 247 (569)
T PF15015_consen 168 FLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLA 247 (569)
T ss_pred cChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 44566777888888899999999999999999999887432 1 12445789999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 012683 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGV 429 (458)
Q Consensus 388 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 429 (458)
+...-+.|.++|.++.-+++.|.++..+.+|.+|.+.+.-|.
T Consensus 248 Lnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 248 LNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998776654
No 308
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.71 E-value=0.00013 Score=69.63 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=95.1
Q ss_pred hhhHHHh-hccHHHHHHHHHHhhccCCCch-hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh
Q 012683 340 RGDEAFK-QKDYLMAVDAYTQAIDFDPSDA-TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEK 417 (458)
Q Consensus 340 ~g~~~~~-~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~ 417 (458)
.+-.|++ .|+...|+.+++.|+-..|... .-..++|.+.++-|-...|-..+.+++.++...|-.+|-+|.++..+.+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 3444544 4899999999999999998754 4588999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683 418 FDEAANAFYEGVTLDPENKELVFAFREA 445 (458)
Q Consensus 418 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 445 (458)
.+.|++.|+.|++++|+++++...|..+
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999999999998877655
No 309
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.70 E-value=0.00024 Score=58.09 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhhhHHH---hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-----------HHHHHHHHHH
Q 012683 328 PEIKKKAAEAKARGDEAF---KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-----------AEHALADAKA 393 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~ 393 (458)
+...+..-+|.++++..- ....+++|++.|++||.++|+...+++++|.+|...+. |++|..+|++
T Consensus 26 dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 26 DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 333445555555555421 33568999999999999999999999999999988664 8899999999
Q ss_pred HHHhCCCChH
Q 012683 394 CRALRPDWPK 403 (458)
Q Consensus 394 a~~~~p~~~~ 403 (458)
|...+|++.-
T Consensus 106 Av~~~P~ne~ 115 (186)
T PF06552_consen 106 AVDEDPNNEL 115 (186)
T ss_dssp HHHH-TT-HH
T ss_pred HHhcCCCcHH
Confidence 9999999875
No 310
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00011 Score=64.55 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=82.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC----CCC--------
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR----PDW-------- 401 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----p~~-------- 401 (458)
+....+.|...|+.|+|++|+..|+.|++...-++.+-+++|.|+++.++++.|++...+.+... |..
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg 223 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG 223 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence 44567899999999999999999999999999999999999999999999999999999888653 321
Q ss_pred -----------------hHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683 402 -----------------PKACYREGAALRLLEKFDEAANAFYE 427 (458)
Q Consensus 402 -----------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 427 (458)
.+++.-.+-++++.|+++.|.+.+..
T Consensus 224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 46667788899999999999988753
No 311
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.00022 Score=65.34 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC--C----chhHHHhHHHHHHhh-CCHHHHHHHHHHHHHhCC--CC-
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP--S----DATLLSNRSLCWIRL-GQAEHALADAKACRALRP--DW- 401 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p--~~- 401 (458)
..+..+.+ +-..+++.++++|+..|++|+++.- + -..++..+|.+|... |++++|++.|.+|+.+-. +.
T Consensus 73 ~Aa~~~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEE-AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 33444544 4444566699999999999998632 1 246788999999998 999999999999998721 12
Q ss_pred ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 402 ---PKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
...+...|.++..+|+|++|++.|++....
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456678999999999999999999988764
No 312
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.63 E-value=5.3e-05 Score=77.18 Aligned_cols=119 Identities=22% Similarity=0.207 Sum_probs=67.5
Q ss_pred cHHHHHHhCCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHH
Q 012683 157 TPLIWAAGHGQQEAVKVLLEH-HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE 234 (458)
Q Consensus 157 t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~ 234 (458)
+.+|+++..+..-.++.+++. |......+.+|.-.+|+++..|.--.+..+.-.|..+++. ..|+||||+|+..|+..
T Consensus 576 lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~ 655 (975)
T KOG0520|consen 576 LLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREK 655 (975)
T ss_pred HHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHH
Confidence 566666666666666666654 4444445555555566533333222222233445555555 55666666666666666
Q ss_pred HHHHHHHcCCC------CCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683 235 IIKCLLKAGAD------PNVTDEDGQKPIQVAAARGNREAVEILFPL 275 (458)
Q Consensus 235 iv~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 275 (458)
++..|++.|++ +......|.|+-.+|..+|+..+.-+|-+.
T Consensus 656 l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 656 LVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred HHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 66666655543 233334567777777777777766666544
No 313
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.61 E-value=0.00011 Score=43.01 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=19.3
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPD 400 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 400 (458)
.+|+.+|.+|.++|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34556666666666666666666666666553
No 314
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00082 Score=60.57 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=74.8
Q ss_pred HHHhhccHHHHHHHHHHhhccCCCch-hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHH
Q 012683 343 EAFKQKDYLMAVDAYTQAIDFDPSDA-TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEA 421 (458)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A 421 (458)
.+..+++|+.|+..++-...++.+.- ..-.-+|.|++.+|+|++|+..|+-+.+-+--+.+...++|.+++.+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 45678899999999998887765433 55556899999999999999999999998877889999999999999999999
Q ss_pred HHHHHHh
Q 012683 422 ANAFYEG 428 (458)
Q Consensus 422 ~~~~~~a 428 (458)
...-.+|
T Consensus 111 ~~~~~ka 117 (557)
T KOG3785|consen 111 KSIAEKA 117 (557)
T ss_pred HHHHhhC
Confidence 9887776
No 315
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.56 E-value=0.00014 Score=66.69 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=95.5
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----CCCC
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRAL----RPDW 401 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~ 401 (458)
.+..++=+.|+.|+-.|+|++||..-+.-+++.... -.++.|+|.|++-+|+++.|+++|+.++.+ ...-
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 445667789999999999999999887777764332 369999999999999999999999996544 4333
Q ss_pred --hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHhhhhh
Q 012683 402 --PKACYREGAALRLLEKFDEAANAFYEGVTLDP------ENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~ 453 (458)
...-|-+|..|.-+.+|+.|+.++.+-+++.. ....+.+.|+.++..++.-.
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~ 332 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR 332 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence 45568999999999999999999988665421 34566777787777776543
No 316
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0021 Score=55.84 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHH
Q 012683 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN 423 (458)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 423 (458)
.+..|.-.|+..-+..|..+.+....|.|++.+|+|++|...++.|+..++++++.+-++-.+-...|.-.++.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 344555555554444444455555555555555555555555555555555555555555555555554444443
No 317
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.53 E-value=0.0019 Score=49.92 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=70.9
Q ss_pred chhHHHhHHHHHHhhC---CHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHH
Q 012683 367 DATLLSNRSLCWIRLG---QAEHALADAKACRA-LRPD-WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA 441 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 441 (458)
.....|++|.++.... +..+.+..++..++ -.|. .-+..|.+|..++++++|+.|+.+.+..++.+|++.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4567788888888755 56688889999887 4453 35677899999999999999999999999999999999998
Q ss_pred HHHHHHHhhh
Q 012683 442 FREAVEAGRK 451 (458)
Q Consensus 442 l~~~~~~~~~ 451 (458)
-..+..++.+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 8888887765
No 318
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.52 E-value=0.0016 Score=53.43 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=94.5
Q ss_pred hHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhhhHHH
Q 012683 342 DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA-LRPDWPKACYREGAALRLLEKFDE 420 (458)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~~a~~~~~~~~~~~ 420 (458)
...-+.=|.+.......+.++..|+ ..-.+.+|.....+|++.||...|.+++. +--+++.....++.+++..+++.+
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 3334445666677777777777776 44567899999999999999999999986 677889999999999999999999
Q ss_pred HHHHHHHhhccCCC--cHHHHHHHHHHHHHhhhhhcCC
Q 012683 421 AANAFYEGVTLDPE--NKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 421 A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
|...+++..+.+|. .+.-+..+++++..++++..++
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Ae 180 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAE 180 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHH
Confidence 99999999999986 4677888999999888876543
No 319
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0018 Score=57.29 Aligned_cols=116 Identities=24% Similarity=0.191 Sum_probs=96.5
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHH---------------------
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKA--------------------- 393 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~--------------------- 393 (458)
+.....+......|++.+|...|..++...|++..+...++.||...|+.++|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999776655443
Q ss_pred -------------HHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHhh
Q 012683 394 -------------CRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP--ENKELVFAFREAVEAGR 450 (458)
Q Consensus 394 -------------a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~ 450 (458)
.+..+|++..+-+.+|..+...|++++|++.+...++.+- ++..++..+-.++..++
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 1233899999999999999999999999999988887654 45667777777666655
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.48 E-value=0.00013 Score=42.62 Aligned_cols=33 Identities=30% Similarity=0.562 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 435 (458)
++|+.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 679999999999999999999999999999853
No 321
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.47 E-value=0.00099 Score=67.05 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=88.5
Q ss_pred hHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHH
Q 012683 342 DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEA 421 (458)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A 421 (458)
-.....++|.+|+....+.++..|+.+-+...-|..+.++|+.++|...++..-...+++...+-.+-.+|.+++++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567788889999999999999998888888888999999999999666666667778888888888899999999999
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 422 ANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 422 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
...|++++..+|. .+....+=.++.+.+.+.
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHH
Confidence 9999999988888 666555555555555443
No 322
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.41 E-value=0.0043 Score=54.37 Aligned_cols=113 Identities=21% Similarity=0.251 Sum_probs=57.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHH-HHHhhCCHHHHHHHHHHHHHhCC---CChHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSL-CWIRLGQAEHALADAKACRALRP---DWPKACYREGA 410 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~~a~ 410 (458)
..+...|......+++.++++.+.+++...+.........+. ++...|++++|...+.+++..+| .....++.++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 334445555555555555555555555555444333333444 55555555555555555555444 23444444444
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCC-cHHHHHHHHHHHH
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPE-NKELVFAFREAVE 447 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 447 (458)
.+...++++.|+..+.+++...+. .......++..+.
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 455555555555555555555555 3444444444443
No 323
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0022 Score=56.63 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=80.5
Q ss_pred HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHH
Q 012683 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN 423 (458)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 423 (458)
+.+..+|+.||++++.-.+..|.+...++.+|.||+...+|.+|...|++..++-|...+.-+.-|+.++..+.|.+|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 012683 424 AFYEGV 429 (458)
Q Consensus 424 ~~~~a~ 429 (458)
......
T Consensus 100 V~~~~~ 105 (459)
T KOG4340|consen 100 VAFLLL 105 (459)
T ss_pred HHHHhc
Confidence 876554
No 324
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0018 Score=56.05 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=92.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhc----cCC--CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAID----FDP--SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
..-....|....+.||-+.|-..|+..-+ ++. ....+..+.+.+|.-..+|.+|...+++.+..||.++.+-.+
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~Nn 291 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNN 291 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhch
Confidence 34456789999999999999999885433 222 234677788889999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHH
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVE 447 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~ 447 (458)
.|.|+.-+|+..+|++..+.++...|.. ....+++..+++
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence 9999999999999999999999999964 333444444443
No 325
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.00027 Score=64.80 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=94.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----C--CCChH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----ATLLSNRSLCWIRLGQAEHALADAKACRAL----R--PDWPK 403 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~--p~~~~ 403 (458)
.-.+-.+|..+++.|++...+.+|+.|++...++ ..+|+.+|.+|+.+++|++|+++-..=+-+ . -...+
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 4457788999999999999999999999998776 468999999999999999999976654432 2 23456
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHhhhh
Q 012683 404 ACYREGAALRLLEKFDEAANAFYEGVTLDP------ENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 404 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~ 452 (458)
+--++|..+..+|.|++|+.+-.+-+.+.. ....++++++.++...|+-
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~ 151 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC 151 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc
Confidence 667999999999999999987666554321 2356788888888876654
No 326
>PRK10941 hypothetical protein; Provisional
Probab=97.37 E-value=0.0016 Score=58.44 Aligned_cols=71 Identities=20% Similarity=0.098 Sum_probs=44.3
Q ss_pred HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHH
Q 012683 371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA 441 (458)
Q Consensus 371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 441 (458)
..++=.+|.+.++++.|++..+..+.++|+++.-+..+|.+|.++|.+..|+.+++..++..|+++.+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 33455566666666666666666666666666666666666666666666666666666666666655433
No 327
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.36 E-value=0.0013 Score=60.40 Aligned_cols=81 Identities=22% Similarity=0.125 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683 348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE 427 (458)
Q Consensus 348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 427 (458)
+++..=+...++.+...|+++.+++.+|..+++.+.|.+|-.+|+.|++..|.. ..|.-+|.++..+|+..+|.+.+++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHH
Confidence 445555555566666666666666666666666666666666666666666633 3466666666666666666666666
Q ss_pred hh
Q 012683 428 GV 429 (458)
Q Consensus 428 a~ 429 (458)
++
T Consensus 387 ~L 388 (400)
T COG3071 387 AL 388 (400)
T ss_pred HH
Confidence 65
No 328
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.34 E-value=0.00076 Score=59.58 Aligned_cols=106 Identities=13% Similarity=0.085 Sum_probs=85.9
Q ss_pred CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683 324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK 403 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 403 (458)
.+..+...+.+....+.+....+.|+.++|...|..|+.++|+++.++...|+....-.+.-+|-+.|.+|+.++|.+.+
T Consensus 106 te~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 106 TENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred cccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 34555566677777788888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----hhhHHHHHHHHHHhh
Q 012683 404 ACYREGAALRL----LEKFDEAANAFYEGV 429 (458)
Q Consensus 404 ~~~~~a~~~~~----~~~~~~A~~~~~~a~ 429 (458)
++.++++-.-- -.++-+.+...+..+
T Consensus 186 ALvnR~RT~plV~~iD~r~l~svdskrd~~ 215 (472)
T KOG3824|consen 186 ALVNRARTTPLVSAIDRRMLRSVDSKRDEF 215 (472)
T ss_pred HHhhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 99988764322 233344444444444
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.30 E-value=0.0017 Score=41.96 Aligned_cols=44 Identities=20% Similarity=0.115 Sum_probs=36.1
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
+.+|.+|..+.++|+|.+|.++++.+++++|++..+.--...+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 46789999999999999999999999999999998776555443
No 330
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.23 E-value=0.00047 Score=64.52 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=61.7
Q ss_pred HHcCCHHHHHHHHHcCCCcccc-------CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683 196 VAAGSLTCLDLLIQAGANANIV-------AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREA 268 (458)
Q Consensus 196 ~~~~~~~~~~~Ll~~g~~~~~~-------~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 268 (458)
....-...+++|.+++.+.|.. .-.-|+||+|+..|.-++|.+||+.|+|+..+|..|+||..++. +.++
T Consensus 399 kk~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdV 475 (591)
T KOG2505|consen 399 KKKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDV 475 (591)
T ss_pred hccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHH
Confidence 3444578899999999998876 12569999999999999999999999999999999999999887 4444
Q ss_pred HHhhc
Q 012683 269 VEILF 273 (458)
Q Consensus 269 v~~Ll 273 (458)
-..++
T Consensus 476 k~~F~ 480 (591)
T KOG2505|consen 476 KSIFI 480 (591)
T ss_pred HHHHH
Confidence 44444
No 331
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.00082 Score=63.09 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=94.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHh-hccC------CC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHH--------
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQA-IDFD------PS--DATLLSNRSLCWIRLGQAEHALADAKACRA-------- 396 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~------p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-------- 396 (458)
+..++-+.+.++-.|+|..|.+.+... +.-. |. ...+|.|+|.+++++|.|..+..+|.+|++
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 456788899999999999999986442 2222 22 234678999999999999999999999996
Q ss_pred -hCC---------CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 397 -LRP---------DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 397 -~~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
+.| ...+..|+.|..+...|+.-.|.++|.++++..-.+|..|..++.|.-
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 122 246788999999999999999999999999998889999999988764
No 332
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0053 Score=52.71 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=75.6
Q ss_pred CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683 324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK 403 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 403 (458)
++..+-.....--+.+.++.++..|+|-++++..+..+...|.+..+||.||.++...=+.++|..+|.++++++|.-..
T Consensus 220 ~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 220 PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 44445445555568899999999999999999999999999999999999999999999999999999999999998766
Q ss_pred HHHHHHHHH
Q 012683 404 ACYREGAAL 412 (458)
Q Consensus 404 ~~~~~a~~~ 412 (458)
+--+--++.
T Consensus 300 vVsrElr~l 308 (329)
T KOG0545|consen 300 VVSRELRLL 308 (329)
T ss_pred HHHHHHHHH
Confidence 555444433
No 333
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.20 E-value=0.0066 Score=53.13 Aligned_cols=105 Identities=27% Similarity=0.363 Sum_probs=79.2
Q ss_pred HHHhhccHHHHHHHHHHhhccCC---CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhhhH
Q 012683 343 EAFKQKDYLMAVDAYTQAIDFDP---SDATLLSNRSLCWIRLGQAEHALADAKACRALRPD-WPKACYREGAALRLLEKF 418 (458)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~ 418 (458)
.++..|++++|+..|.+++...| .....+..++..+...+++++|+..+.+++...|. ....+..++..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 77788888888888888877666 34566666666677788888888888888888888 688888888888888888
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 419 DEAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
+.|...+..++...|........++..+.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 88888888888877775444444444444
No 334
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=0.0027 Score=63.35 Aligned_cols=124 Identities=27% Similarity=0.333 Sum_probs=106.6
Q ss_pred CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----chhHHHhHHHHHHh--hCCHHHHHHHHHHHHHhCC
Q 012683 326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLCWIR--LGQAEHALADAKACRALRP 399 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~--~~~~~~A~~~~~~a~~~~p 399 (458)
.......++..+..+|+.+|++++|..|-..|..++.+-|. ....+.+.+.|+.. +++|.+++..+.-|+...|
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p 124 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQP 124 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccc
Confidence 34455678889999999999999999999999999999884 35677788888877 5699999999999999999
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
...++++.++++|..++.++-|.+.+.-....+|.+..+...+..++..+
T Consensus 125 ~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 125 RISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999998888889999977777555555444
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.17 E-value=0.00071 Score=39.06 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683 404 ACYREGAALRLLEKFDEAANAFYEGVTLDPE 434 (458)
Q Consensus 404 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 434 (458)
++|.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 336
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.14 E-value=0.00072 Score=57.25 Aligned_cols=61 Identities=20% Similarity=0.118 Sum_probs=56.6
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW 401 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 401 (458)
+...++.++.+.|.+.|.+++++.|....-|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456788999999999999999999999999999999999999999999999999999976
No 337
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0028 Score=56.78 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=74.2
Q ss_pred HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 371 LSNRSLCWIRLGQAEHALADAKACRALRPDW----PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
|-.-|.=|++-.+|..|+..|.++|+.+..+ ...|.++|-|++.+|+|..|+.+..+|++++|.+..++..=+.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3345778899999999999999999986554 567889999999999999999999999999999999999999999
Q ss_pred HHhhhhhc
Q 012683 447 EAGRKFHG 454 (458)
Q Consensus 447 ~~~~~~~~ 454 (458)
.++.++..
T Consensus 164 ~eLe~~~~ 171 (390)
T KOG0551|consen 164 LELERFAE 171 (390)
T ss_pred HHHHHHHH
Confidence 98888543
No 338
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.10 E-value=0.0025 Score=60.50 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=47.6
Q ss_pred HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-CCCcHHHHHHH
Q 012683 370 LLSNRSLCWIRLGQAEHALADAKACRALRPD--WPKACYREGAALRLLEKFDEAANAFYEGVTL-DPENKELVFAF 442 (458)
Q Consensus 370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l 442 (458)
+...+|.|..++|+.+||++.++..++..|. +...++++..++..++.|.++...+.+.-+. -|..+...+..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence 3445677777777777777777777776664 4556777777777777777777777665332 24444444433
No 339
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0079 Score=52.43 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=97.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
+.....-+++.+..+++-|.....+..+++ +-..+..+|.++.+ .+++.+|.-.|+.....-|..+.....+|.
T Consensus 138 E~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av 215 (299)
T KOG3081|consen 138 EAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAV 215 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHH
Confidence 344556677888888899999999888876 44566677777776 457999999999999988888889999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
++..+|+|++|...++.++..++++++...++-.+-.-+|+.
T Consensus 216 ~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 216 CHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999998887776666654
No 340
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.06 E-value=0.005 Score=45.16 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=27.7
Q ss_pred HHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 012683 354 VDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW 401 (458)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 401 (458)
+..++++++.+|++..+.+.+|.++...|++++|++.+-.+++.++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 444556666666666666666666666666666666666666666555
No 341
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.06 E-value=0.0037 Score=61.43 Aligned_cols=96 Identities=15% Similarity=0.008 Sum_probs=78.9
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHH-HHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKA-CYREG 409 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~~a 409 (458)
--++..|..+..+|+.++|++.|++++...... .-.++.+|.|+.-+.+|++|..+|.+..+.+..+... +|..|
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 347889999999999999999999999644332 3578899999999999999999999999976643332 35688
Q ss_pred HHHHHhhhH-------HHHHHHHHHhhc
Q 012683 410 AALRLLEKF-------DEAANAFYEGVT 430 (458)
Q Consensus 410 ~~~~~~~~~-------~~A~~~~~~a~~ 430 (458)
.++..+|+. ++|.+.|+++-.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 899999999 888888887643
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.04 E-value=0.0013 Score=37.96 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.3
Q ss_pred HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 012683 370 LLSNRSLCWIRLGQAEHALADAKACRALRPDW 401 (458)
Q Consensus 370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 401 (458)
+++++|.++.++|++++|++.|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57788888888888888888888888888864
No 343
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.02 E-value=0.019 Score=52.39 Aligned_cols=115 Identities=12% Similarity=-0.049 Sum_probs=88.1
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh-hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR-LGQAEHALADAKACRALRPDWPKACYREGAALRLL 415 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 415 (458)
|....+...+.+..+.|...|.+|....+-...+|...|..-.. .++.+.|...|+.+++.-|.+...+.....-+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 44555556666778999999999997666678999999999777 45666699999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHhhh
Q 012683 416 EKFDEAANAFYEGVTLDPENK---ELVFAFREAVEAGRK 451 (458)
Q Consensus 416 ~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~ 451 (458)
++.+.|...|++++..-|... .+|........+.|+
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence 999999999999998877655 455555555555443
No 344
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.02 E-value=0.0032 Score=54.85 Aligned_cols=72 Identities=21% Similarity=0.102 Sum_probs=65.5
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHH
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 438 (458)
.+.-|++-|...++.|+|++|++.|+++....|.. .++.+.++.++++.++|++|+...++.+++.|+++++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 46789999999999999999999999999987754 6899999999999999999999999999999987654
No 345
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.01 E-value=0.0067 Score=44.50 Aligned_cols=68 Identities=22% Similarity=0.130 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc--HHHHHHHHHHHHHhhhhh
Q 012683 386 HALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN--KELVFAFREAVEAGRKFH 453 (458)
Q Consensus 386 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~ 453 (458)
..+..++++++.+|++..+.|.+|..+...|++++|++.+...++.+++. ..++..+-.++..+|..+
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 35678899999999999999999999999999999999999999998765 788888888888887643
No 346
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.0099 Score=51.66 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=99.1
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHH----HhC--CCChHHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACR----ALR--PDWPKACYREG 409 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~----~~~--p~~~~~~~~~a 409 (458)
..-..+.+.--+.|.-....|.+.++.+ |.++.+...+|.+.++.|+.+.|..+|+.+- +++ ....-.+.+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3445666777789999999999999998 6689999999999999999999999999543 333 23456678899
Q ss_pred HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
.+|.-.++|.+|...|.+++..+|.++.+..+.+.|+.-+++..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777643
No 347
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.0058 Score=54.94 Aligned_cols=117 Identities=11% Similarity=0.019 Sum_probs=92.8
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-CCCCh---HHHHHHHHHHH
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-RPDWP---KACYREGAALR 413 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~---~~~~~~a~~~~ 413 (458)
-..+...+.+|++.+|...+.+.++-.|.+.-++-..-.+++.+|+...-...+++.+.. +|+-| -..--.++.+.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 345566788889999988999999999999888888888888899988888888888876 66553 22335778888
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
+.|-|++|.+.-++++++||.+.=+....+.+++.-++..+
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Ke 227 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKE 227 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhh
Confidence 89999999999999999999888887778877775555443
No 348
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.99 E-value=0.0093 Score=44.80 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=75.6
Q ss_pred hhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCC-----------HHHHHHHHHHHHHhCCCChHHH
Q 012683 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQ-----------AEHALADAKACRALRPDWPKAC 405 (458)
Q Consensus 340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~a~~~~p~~~~~~ 405 (458)
++..+|.+|++-+|++..+..+...+++. .++..-|.++.++.. .-.|++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57789999999999999999999888766 445556777655432 4578999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 406 YREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 406 ~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
|.+|.=+.....|+++..--++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998888888888888888888754
No 349
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.98 E-value=0.0013 Score=61.97 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=70.2
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
+-+++..+++.++|..|+....+||+++|....+|+.+|.+..+++++.+|+.+|++...+.|+.+.+......|...
T Consensus 41 ~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 41 FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 345667889999999999999999999999999999999999999999999999999999999999877766665543
No 350
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.019 Score=54.21 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=102.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
.+.+...|+--...+++..|.+.|++|+..+..+-.+|...+.+-++......|...+++|+.+-|.-.+.||..-.+-.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 45577778778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
.+|+...|.+.|++=+...|+ .++|..+-....+.+
T Consensus 153 ~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYK 188 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhh
Confidence 999999999999999999998 455554444444333
No 351
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.98 E-value=0.0028 Score=56.16 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=65.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 375 SLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 375 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
|.-..+.|+.++|...|+.|++++|++++++...|.....-.+.-+|-.+|-+|+.+.|.+.++..+.++..-
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 3445578999999999999999999999999999999999999999999999999999999999887765443
No 352
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.93 E-value=0.0013 Score=55.72 Aligned_cols=62 Identities=31% Similarity=0.444 Sum_probs=57.5
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 376 LCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 376 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
....+.++.+.|.+.|.+|+.+-|+|...|+++|......|+++.|.+.|++.++++|++..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 44567889999999999999999999999999999999999999999999999999998743
No 353
>PRK10941 hypothetical protein; Provisional
Probab=96.93 E-value=0.017 Score=51.81 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=70.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.-+.+.=..+.+.++|+.|+.+.+..+.+.|+++.-+--||.+|.++|.+..|+.+++.-++..|+.+.+-.-+.++.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 345566667889999999999999999999999999999999999999999999999999999999998877666654
No 354
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.90 E-value=0.0035 Score=56.88 Aligned_cols=118 Identities=15% Similarity=0.244 Sum_probs=90.5
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW------- 401 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------- 401 (458)
+.....|+.+..-+.|+++++.|++|+.+..+. ..++..+|..+..+.++++|+-+..+|..+-...
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 445568889999999999999999999875432 3578899999999999999999999998774321
Q ss_pred ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHHhhhh
Q 012683 402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLD------PENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~ 452 (458)
..++|+++.++..+|+..+|.++-+++.++. |-...+.--++.++...++.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~ 262 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL 262 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH
Confidence 3567899999999999999999999887652 22334455566666555543
No 355
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.019 Score=47.84 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=80.3
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-KACYREGA 410 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~a~ 410 (458)
-.....+..++..+++++|+..++.++....+. +-+-.++|.+....|.+++|+..++..- ++.|. ..--.+|-
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGD 167 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhh
Confidence 345778889999999999999999999765443 3567789999999999999999877543 23333 34557999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCc
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~ 435 (458)
++...|+-++|+..|.+++..+++.
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCCh
Confidence 9999999999999999999987443
No 356
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.0074 Score=58.76 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=87.4
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 405 (458)
-.-.-+|+.|..+|+.++|..+++.|...+...|.+ ..+.-+++.||+++.+.+.|++++.+|=+.+|.++-..
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 334568999999999999999999999999987765 34677899999999999999999999999999999888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 406 YREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 406 ~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
+..-.+....+.-++|+.+......
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh
Confidence 8888888999999999998876543
No 357
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.86 E-value=0.0022 Score=35.15 Aligned_cols=27 Identities=56% Similarity=0.870 Sum_probs=16.6
Q ss_pred CCcHHHHHHhcCcHHHHHHHHHcCCCC
Q 012683 220 GATPLHIAADIGSTEIIKCLLKAGADP 246 (458)
Q Consensus 220 g~t~L~~A~~~~~~~iv~~Ll~~g~~~ 246 (458)
|.||+|+|+..++.++++.|+++|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 456666666666666666666655543
No 358
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.84 E-value=0.0083 Score=48.88 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
.....+...+..+...|++++|+..+++++..+|.+-.+|..+-.++...|++.+|++.|.+..+
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556677777888999999999999999999999999999999999999999999999998754
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.84 E-value=0.0021 Score=36.40 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHhHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 012683 370 LLSNRSLCWIRLGQAEHALADAKACRALRP 399 (458)
Q Consensus 370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 399 (458)
+|+++|.++..++++++|+..++++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344445555555555555555555544444
No 360
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=96.80 E-value=0.014 Score=47.84 Aligned_cols=72 Identities=10% Similarity=0.002 Sum_probs=44.8
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHH
Q 012683 92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEA 170 (458)
Q Consensus 92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~ 170 (458)
.-+..|+..+-..|++..-+...+- -...++.+..||+..+.++|+|+-+.=. ..+-.+.+..|+...+.++
T Consensus 48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~----i~~~~~iFdIA~~~kDlsL 119 (192)
T PF03158_consen 48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLH----IYNPEDIFDIAFAKKDLSL 119 (192)
T ss_pred HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccC----CCCchhhhhhhhhccchhH
Confidence 3456777888888877775543211 1345677788888888888888843211 1112245677777777665
No 361
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.79 E-value=0.0023 Score=37.80 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=10.6
Q ss_pred HHhHHHHHHhhCCHHHHHHHHHH
Q 012683 371 LSNRSLCWIRLGQAEHALADAKA 393 (458)
Q Consensus 371 ~~~~a~~~~~~~~~~~A~~~~~~ 393 (458)
|.++|.+|.++|+|++|+..|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444
No 362
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.76 E-value=0.0017 Score=38.39 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 404 ACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 404 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
+|.++|.+|...|+|++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999996644
No 363
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.74 E-value=0.0032 Score=35.59 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 435 (458)
.+|+.+|.++...|++++|...|+++++.+|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999988863
No 364
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.74 E-value=0.1 Score=42.30 Aligned_cols=115 Identities=15% Similarity=-0.036 Sum_probs=96.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
+....+.+........++.+.+...+...--+.|..+.+-..-|..++..|+|.+|++.++.+..-.|.++-+---++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34567888888889999999999999988889999999999999999999999999999999999999999888999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
++.+|+.+.=.... ++++..+ ++.+......++.+
T Consensus 88 L~~~~D~~Wr~~A~-evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 88 LYALGDPSWRRYAD-EVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HHHcCChHHHHHHH-HHHhcCC-ChHHHHHHHHHHHh
Confidence 99999988766543 3554443 56666666665543
No 365
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.70 E-value=0.0036 Score=34.26 Aligned_cols=24 Identities=46% Similarity=0.671 Sum_probs=10.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCC
Q 012683 91 ETPLLHAARQGHTETAKYLFEHGA 114 (458)
Q Consensus 91 ~t~L~~A~~~g~~~~v~~Ll~~~~ 114 (458)
.||+|+|+..++.++++.|++.+.
T Consensus 3 ~~~l~~~~~~~~~~~~~~ll~~~~ 26 (30)
T smart00248 3 RTPLHLAAENGNLEVVKLLLDKGA 26 (30)
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 344444444444444444444433
No 366
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=96.69 E-value=0.02 Score=47.03 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=48.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683 57 RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136 (458)
Q Consensus 57 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 136 (458)
...|..|+.++-+.+++..-+.. ...-...++-+-.||...+.++|+|+-++ .... .-.+.+.+|...+++
T Consensus 47 ~CLl~HAVk~nmL~ILqkyke~L----~~~~~~~q~LFElAC~~qkydiV~WI~qn---L~i~--~~~~iFdIA~~~kDl 117 (192)
T PF03158_consen 47 WCLLYHAVKYNMLSILQKYKEDL----ENERYLNQELFELACEEQKYDIVKWIGQN---LHIY--NPEDIFDIAFAKKDL 117 (192)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHh----hcchhHHHHHHHHHHHHccccHHHHHhhc---cCCC--Cchhhhhhhhhccch
Confidence 34567788888888888776541 11123567778889998899999998433 2222 234567788877776
Q ss_pred HH
Q 012683 137 EL 138 (458)
Q Consensus 137 ~~ 138 (458)
++
T Consensus 118 sL 119 (192)
T PF03158_consen 118 SL 119 (192)
T ss_pred hH
Confidence 65
No 367
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.56 E-value=0.025 Score=55.65 Aligned_cols=106 Identities=11% Similarity=0.049 Sum_probs=87.2
Q ss_pred hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhhhHHHHH
Q 012683 347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW----PKACYREGAALRLLEKFDEAA 422 (458)
Q Consensus 347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~a~~~~~~~~~~~A~ 422 (458)
....+.|.+.++...+..|+..-.++..|..+...|+.++|++.|++++.....+ .-.++.+|.++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4466778889999999999999999999999999999999999999998654444 356789999999999999999
Q ss_pred HHHHHhhccCCCc-HHHHHHHHHHHHHhhhh
Q 012683 423 NAFYEGVTLDPEN-KELVFAFREAVEAGRKF 452 (458)
Q Consensus 423 ~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~ 452 (458)
++|.+..+.+.-. .-+.+..+.|+..+++.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999876654 44455556666666554
No 368
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.54 E-value=0.025 Score=61.23 Aligned_cols=121 Identities=14% Similarity=-0.030 Sum_probs=90.7
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC------h
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW------P 402 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~ 402 (458)
.......|..++..|++++|...++++++..+.. ..++..+|.++...|++++|...+.+++...... .
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3444457888999999999999999999865442 2466789999999999999999999999763321 2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC--------cHHHHHHHHHHHHHhhhhhc
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPE--------NKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~~~~l~~~~~~~~~~~~ 454 (458)
.++..+|.++...|++++|...+++++.+-.. .......++.++...|+.++
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 45678899999999999999999998875211 12234455566665666544
No 369
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.54 E-value=0.031 Score=53.14 Aligned_cols=93 Identities=15% Similarity=0.084 Sum_probs=78.5
Q ss_pred HHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh-HHHHHHHHHHhhcc
Q 012683 353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEK-FDEAANAFYEGVTL 431 (458)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~ 431 (458)
-...|+.|....+.|..+|++...-..+.+.+.+--..|.++++..|+++..|..-|.=.+..+. .+.|...|.++++.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34568888888888999999886655566669999999999999999999999999988888877 89999999999999
Q ss_pred CCCcHHHHHHHHHH
Q 012683 432 DPENKELVFAFREA 445 (458)
Q Consensus 432 ~p~~~~~~~~l~~~ 445 (458)
+|+.+..+..+=++
T Consensus 170 npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 170 NPDSPKLWKEYFRM 183 (568)
T ss_pred CCCChHHHHHHHHH
Confidence 99999887765444
No 370
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.52 E-value=0.00041 Score=62.26 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=67.8
Q ss_pred hhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 380 RLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 380 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..|.+++|++.|..||.++|.....|-.+|.++..++....|+.++..|+.++|+...-+...+.+...++++.++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 4577999999999999999999999999999999999999999999999999999887777777777767666544
No 371
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.44 E-value=0.049 Score=44.18 Aligned_cols=85 Identities=21% Similarity=0.114 Sum_probs=76.6
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
..+.....+-...++.+++...+...-.+.|..+..-..-|..+...|+|.+|+..|+......|..+-+.-.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555666777788999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhh
Q 012683 449 GRKFH 453 (458)
Q Consensus 449 ~~~~~ 453 (458)
+++..
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 88764
No 372
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.40 E-value=0.058 Score=54.89 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=90.2
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
-+..-+|-.+++.|++++|..+++..-...+++-..+.-+-.||..++++++|+..|+++++.+|. -+..+.+=.+|.+
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 345567888999999999998887777777888888999999999999999999999999999999 8889999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAF 442 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l 442 (458)
.+.|..--+.-.+..+..|.++-+.+..
T Consensus 123 ~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 123 EKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 9999876666556666778887654433
No 373
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.39 E-value=0.029 Score=60.75 Aligned_cols=120 Identities=12% Similarity=0.044 Sum_probs=88.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC-------
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS------DATLLSNRSLCWIRLGQAEHALADAKACRALRPD------- 400 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~------- 400 (458)
+..+...|..+...|++++|...+++++..... ...++.++|.++...|++++|...+++++.+-..
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 445667888889999999999999999976332 1346678899999999999999999999886221
Q ss_pred -ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHHhhhhh
Q 012683 401 -WPKACYREGAALRLLEKFDEAANAFYEGVTLDPE-----NKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 401 -~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~~~~~~~ 453 (458)
....+..+|.++...|++++|...+.+++..... ...++..++.+....++..
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 629 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLD 629 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHH
Confidence 1234567899999999999999999998765221 2334444555555555543
No 374
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.083 Score=45.33 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=74.7
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCchh------HHHhHHHHHHhh-CCHHHHHHHHHHHHHhCC------CChHH
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT------LLSNRSLCWIRL-GQAEHALADAKACRALRP------DWPKA 404 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p------~~~~~ 404 (458)
+..+...|++.+..+|+.+++++|++..+-.. -+..+|..|..- .++++|+.+|++|-.--. ..-+.
T Consensus 77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC 156 (288)
T KOG1586|consen 77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKC 156 (288)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence 34445566777999999999999998655433 334677777764 889999999999876432 22366
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHH
Q 012683 405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA 441 (458)
Q Consensus 405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 441 (458)
+...|.--..+++|..|+..|++.....-++.-..+.
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 6777777788999999999999887665555544433
No 375
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.05 E-value=0.0086 Score=56.41 Aligned_cols=62 Identities=32% Similarity=0.346 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683 69 TDVCKYLLEELKLDVDT------QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA 131 (458)
Q Consensus 69 ~~~v~~ll~~~~~~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 131 (458)
.+.+++|.+. +...|. .+..--|+||+|+..|..++|.+||+.|+|+..+|..|.||..++.
T Consensus 404 p~~ie~lken-~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKEN-LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhc-CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 4566677665 544432 2333567888888888888888888888888888888888887765
No 376
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.99 E-value=0.17 Score=48.58 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=63.7
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-CCCChHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRAL-RPDWPKACYREGA 410 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~a~ 410 (458)
.-.-+..|..+.+.|+.+||++.|...++..|. ...+..++-.+++.+++|.++...+.+==.+ -|.+....|..|.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344567899999999999999999999988776 4679999999999999999999988885333 3666776676665
Q ss_pred HH
Q 012683 411 AL 412 (458)
Q Consensus 411 ~~ 412 (458)
..
T Consensus 339 Lk 340 (539)
T PF04184_consen 339 LK 340 (539)
T ss_pred HH
Confidence 44
No 377
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.89 E-value=0.054 Score=57.14 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=89.3
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhC-------CHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLG-------QAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~-------~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
..-...+...+.|++|+..|++.-.-.|... ++.|..|...+..- .+.+|+.-|++.. -.|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 3345567788899999999999988888754 67788887766532 4666666666543 35777778999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
.|.+|.++|+|+|-+++|.-|++..|++|..-.....+..++.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777777666644
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.87 E-value=0.072 Score=37.22 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh---HHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT---LLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
..+....++|-.++...+.++|+..+.++++..++.+. ++-.+..+|...|+|.+.+++.-+-+.+
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999999998776554 4556678888899999999887776654
No 379
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.85 E-value=0.26 Score=46.71 Aligned_cols=123 Identities=16% Similarity=0.090 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC----CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--C-C----
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP----SDATLLSNRSLCWIRLGQAEHALADAKACRAL--R-P---- 399 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~-p---- 399 (458)
...+..+...+..+.+.|.++.|...+.++....+ ..+.+.+..+...-..|+..+|+..++..+.- . +
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 45677889999999999999999999999888652 25788889999999999999999999888871 1 1
Q ss_pred ---------------------------CChHHHHHHHHHHHHh------hhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 400 ---------------------------DWPKACYREGAALRLL------EKFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 400 ---------------------------~~~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
...++++.+|.-.... +.+++++..|+++++++|+...++..++..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 0145667777777677 8888899999999999999999999999888
Q ss_pred HHhhhhh
Q 012683 447 EAGRKFH 453 (458)
Q Consensus 447 ~~~~~~~ 453 (458)
..+-+..
T Consensus 303 ~~~~~~~ 309 (352)
T PF02259_consen 303 DKLLESD 309 (352)
T ss_pred HHHHHhh
Confidence 8774443
No 380
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.83 E-value=0.029 Score=51.16 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=81.7
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC------
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----------DATLLSNRSLCWIRLGQAEHALADAKACRALR------ 398 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------ 398 (458)
+-....|..+-+-.|+++|+.+..+|.++-.. ...+++.++.++.++|+...|.+.+++|.++.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 45678899999999999999999999886422 23678899999999999999999999998873
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 399 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
|.......-+|-+|...|+.+.|-.-|+.|...
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 334566678999999999999999999998754
No 381
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=95.82 E-value=0.051 Score=46.05 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=59.8
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCC----CCCcHHHHH--HHcC
Q 012683 126 ALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETE----DNITPLLSA--VAAG 199 (458)
Q Consensus 126 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~----~~~t~l~~a--~~~~ 199 (458)
.|.-|+...+++-+.-++... ....+++-+++.++..+++-+|+.+ ......|. .+..-+-++ ....
T Consensus 156 sledAV~AsN~~~i~~~VtdK------kdA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a 228 (284)
T PF06128_consen 156 SLEDAVKASNYEEISNLVTDK------KDAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSA 228 (284)
T ss_pred cHHHHHhhcCHHHHHHHhcch------HHHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCC
Confidence 355666666666665555311 1112667777777778888777764 11111111 111122222 2223
Q ss_pred CHHHHHHHHHcC-CCcccc----CCCCcHHHHHHhcCcHHHHHHHHHcCC
Q 012683 200 SLTCLDLLIQAG-ANANIV----AGGATPLHIAADIGSTEIIKCLLKAGA 244 (458)
Q Consensus 200 ~~~~~~~Ll~~g-~~~~~~----~~g~t~L~~A~~~~~~~iv~~Ll~~g~ 244 (458)
+..+++..+++| +++|.. +.|.|.|.-|...++.+++..|+++|+
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence 455666666666 344433 456666666666666666666666665
No 382
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.73 E-value=0.12 Score=47.35 Aligned_cols=104 Identities=16% Similarity=0.049 Sum_probs=84.7
Q ss_pred HHHhhhHHHh-hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHH
Q 012683 337 AKARGDEAFK-QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP---KACYREGAAL 412 (458)
Q Consensus 337 ~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~~ 412 (458)
+...|..-+. .++.+.|...|+.+++..|.+..+|.....-+...++.+.|...|++++..-|... ..|-.....-
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE 117 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE 117 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 5666777666 67777799999999999999999999999999999999999999999998876655 5677778888
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHH
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVF 440 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 440 (458)
...|+.+...+.++++.+..|++.....
T Consensus 118 ~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 118 SKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 8999999999999999998888655443
No 383
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.68 E-value=0.19 Score=47.78 Aligned_cols=108 Identities=15% Similarity=0.017 Sum_probs=92.9
Q ss_pred HhhccHHHHHHHHHHhhccCCC----chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHH
Q 012683 345 FKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE 420 (458)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 420 (458)
....+.+.+.+.|+.+|++.|. .+-+|...|+--++..+...|.+.+-.||-..|.+- .+-..-..-..+++++.
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDR 455 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHH
Confidence 4558899999999999999996 467899999999999999999999999999999653 33334445678899999
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
-...|++.+...|.+-.+|..++.+...+|+.+
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTD 488 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999988888765
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.67 E-value=0.026 Score=54.60 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=88.4
Q ss_pred HHHhhhHHHh-hccHHHHHHHHHHhhccCCCch--hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 337 AKARGDEAFK-QKDYLMAVDAYTQAIDFDPSDA--TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 337 ~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+-..+..|++ +|+..+|+.+|..++...|... .++..+|.++.++|...+|--.+..|+.-.|....-||.+|.++.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a 294 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA 294 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence 3344555554 4899999999999999988754 578889999999999999999999999999988888999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHH
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKEL 438 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~ 438 (458)
++++|......|..+.+..|...+.
T Consensus 295 ml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 295 MLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred HHhhhhhhhhhhhhhhccCcchhHH
Confidence 9999999999999999999875443
No 385
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.07 Score=47.21 Aligned_cols=72 Identities=21% Similarity=0.089 Sum_probs=48.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683 373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444 (458)
Q Consensus 373 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 444 (458)
++=..+...++++.|+....+.+.++|.++.-...+|.+|.++|.+.-|++++..+++.-|+++.+-....+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 444556666777777777777777777777767777777777777777777777777777776655444333
No 386
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.57 E-value=0.31 Score=41.03 Aligned_cols=102 Identities=22% Similarity=0.133 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC--CCh---
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRP--DWP--- 402 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~--- 402 (458)
++....+..+|.-|.+-|++++|++.|.++.+..... ...+++.-.+.+-.+++..+..+..+|-.+-. .+.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 3556778899999999999999999999988876443 46778888888899999999999999876532 221
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683 403 -KACYREGAALRLLEKFDEAANAFYEGVTLD 432 (458)
Q Consensus 403 -~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 432 (458)
+.....|..+...++|.+|.+.|..+....
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 233456777888999999999998887543
No 387
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.51 E-value=0.16 Score=39.58 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=61.1
Q ss_pred HHHHHhhhHHHhh---ccHHHHHHHHHHhhc-cCCC-chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 335 AEAKARGDEAFKQ---KDYLMAVDAYTQAID-FDPS-DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 335 ~~~~~~g~~~~~~---~~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
+..++.+..+... .+-.+.|..++..++ -.|. .-+..|.+|..++++++|++|+++++..++.+|+|.++.--.-
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4567777777655 456789999999996 4444 3578899999999999999999999999999999998765443
Q ss_pred H
Q 012683 410 A 410 (458)
Q Consensus 410 ~ 410 (458)
.
T Consensus 113 ~ 113 (149)
T KOG3364|consen 113 T 113 (149)
T ss_pred H
Confidence 3
No 388
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.50 E-value=0.027 Score=53.33 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=71.2
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhc---------cCC---------CchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAID---------FDP---------SDATLLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~---------~~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
-.+.+.|..+|+-|.|.-++.+|.+|++ +.| ....+.||.|..|+-.|++-.|.+.|.++++
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 3457899999999999999999999996 111 2457999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHh
Q 012683 397 LRPDWPKACYREGAALRLL 415 (458)
Q Consensus 397 ~~p~~~~~~~~~a~~~~~~ 415 (458)
.--.+|..|.++|.|....
T Consensus 364 vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCcHHHHHHHHHHHHH
Confidence 9999999999999998754
No 389
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.38 E-value=0.038 Score=49.32 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=72.6
Q ss_pred HHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683 357 YTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR-EGAALRLLEKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 357 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 435 (458)
|.++....|+++.+|...+.--.+.+-|.+--..|.++++..|.+.+.|.. -+.-+...++++.+...|.++++.+|+.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 555566678888888888877788888888889999999999999888865 6667788889999999999999999998
Q ss_pred HHHHHHHHHH
Q 012683 436 KELVFAFREA 445 (458)
Q Consensus 436 ~~~~~~l~~~ 445 (458)
+..|..+-+.
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 8887665443
No 390
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.29 E-value=0.65 Score=37.16 Aligned_cols=92 Identities=12% Similarity=-0.118 Sum_probs=78.7
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
...+.+........++.+++...+...=-+.|+.+.+-..-|..++..|+|.+|++.++.+..-.+.++-+---++.|++
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 44556666666678899999988888777899999999999999999999999999999999999999988888999999
Q ss_pred HhhhHHHHHHHH
Q 012683 414 LLEKFDEAANAF 425 (458)
Q Consensus 414 ~~~~~~~A~~~~ 425 (458)
.+||.+.=....
T Consensus 90 al~Dp~Wr~~A~ 101 (153)
T TIGR02561 90 AKGDAEWHVHAD 101 (153)
T ss_pred hcCChHHHHHHH
Confidence 999987755443
No 391
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=95.29 E-value=0.15 Score=43.38 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=23.8
Q ss_pred CHHHHHHHHhCC-CCCC----CCCCCCcHHHHHHhCCCHHHHHHHHhcCC
Q 012683 135 NIELLTYLLSKG-AEVD----SESDAGTPLIWAAGHGQQEAVKVLLEHHA 179 (458)
Q Consensus 135 ~~~~~~~Ll~~~-~~~~----~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~ 179 (458)
+..++++++++| .+++ ..+.+.|.|.-|+..++.+++.+|+++|+
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence 345555555555 2222 12223366666666666666666666665
No 392
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.52 Score=40.65 Aligned_cols=100 Identities=17% Similarity=0.093 Sum_probs=73.7
Q ss_pred HHHhhhHHHhh-ccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC------hH
Q 012683 337 AKARGDEAFKQ-KDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW------PK 403 (458)
Q Consensus 337 ~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~ 403 (458)
.++.|..|-.. .++++||.+|++|-+..... ...+...|..-..+++|.+|++.|+++..-.-++ .+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 44555555555 78899999999988764332 2355566777778999999999999988765544 34
Q ss_pred HH-HHHHHHHHHhhhHHHHHHHHHHhhccCCCcH
Q 012683 404 AC-YREGAALRLLEKFDEAANAFYEGVTLDPENK 436 (458)
Q Consensus 404 ~~-~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 436 (458)
.| +.-|.|+.-..+.=.+...+++...++|...
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 44 4567778777888888889999999999643
No 393
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.18 E-value=0.17 Score=54.27 Aligned_cols=108 Identities=10% Similarity=-0.085 Sum_probs=84.1
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhhhH
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD--WPKACYREGAALRLLEKF 418 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~~~~ 418 (458)
...|-+.+.+++|.+.|+..++...+...+|...|..+++..+-++|...+.+|++-=|. +.+..-.-|..-+..|+-
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 344556678888888888888877777888888888888888888888888888887776 666666777788888888
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 419 DEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
+.+...|+..+.-+|...+.|.-+.....+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik 1646 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIK 1646 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHc
Confidence 888888888888888888877766655444
No 394
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.28 Score=47.97 Aligned_cols=106 Identities=24% Similarity=0.149 Sum_probs=90.5
Q ss_pred hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHH-HHHhCCCChHHHHHH------HHHH
Q 012683 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKA-CRALRPDWPKACYRE------GAAL 412 (458)
Q Consensus 340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~~~~------a~~~ 412 (458)
+.-.+...++...++-....++..+|+++.++.++|.+....|....++..+.+ +....|++..+...+ +..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 566667778888999999999999999999999999999998888888777777 899999998777666 8888
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 445 (458)
..+|+..++.....++..+.|.++.....+--.
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 999999999999999999999987665555444
No 395
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.15 E-value=0.28 Score=39.21 Aligned_cols=81 Identities=20% Similarity=0.093 Sum_probs=71.4
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 373 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
....+-...++++++...+...--+-|+.+..-..-|.++...|+|.+|+..|+......+..+-+.-.++.|+..+++.
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33444455889999999999999999999999999999999999999999999999888888898999999999988876
Q ss_pred h
Q 012683 453 H 453 (458)
Q Consensus 453 ~ 453 (458)
.
T Consensus 95 ~ 95 (153)
T TIGR02561 95 E 95 (153)
T ss_pred H
Confidence 4
No 396
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.08 E-value=0.34 Score=42.10 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=65.9
Q ss_pred HHHhhccHHHHHHHHHHhhcc----C-CC--chhHHHhHHHHHHhhCCHH-------HHHHHHHHHHHhCCC------Ch
Q 012683 343 EAFKQKDYLMAVDAYTQAIDF----D-PS--DATLLSNRSLCWIRLGQAE-------HALADAKACRALRPD------WP 402 (458)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~----~-p~--~~~~~~~~a~~~~~~~~~~-------~A~~~~~~a~~~~p~------~~ 402 (458)
.+-....+++|++.|.-|+-- . +. -+.++..+|.+|..+|+.+ .|++.|.+|+..... ..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 344456778888888777642 1 11 2567888899999999844 566666666654422 25
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLD 432 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 432 (458)
...|.+|...+++|++++|+++|.+.+...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 788999999999999999999999999653
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.07 E-value=0.23 Score=36.78 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
.+..++|.++...|++++|+..+++++++
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455666666666666666666666554
No 398
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=0.36 Score=41.92 Aligned_cols=122 Identities=14% Similarity=0.059 Sum_probs=79.2
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh------HHHhHHHHHHhhCCHHHHHHHHHHHHHh-----CCCC
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT------LLSNRSLCWIRLGQAEHALADAKACRAL-----RPDW 401 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~ 401 (458)
.+..+..-+..+-...+|++|-.++.+|++-..++.. .|-.-|...-.+..+.|+...+++|+.+ .|+-
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 3444555556666678999999999999965544322 3345566666788999999999999877 3444
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC---cHH---HHHHHHHHHHHhhhhhc
Q 012683 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPE---NKE---LVFAFREAVEAGRKFHG 454 (458)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~---~~~~l~~~~~~~~~~~~ 454 (458)
...-..+|--..+.-+.++|+..|++++..--. ... .....++++-++.++.+
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 444444444455677899999999998865322 222 23334455555555544
No 399
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.16 Score=45.95 Aligned_cols=84 Identities=7% Similarity=-0.041 Sum_probs=50.8
Q ss_pred hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhhhHHHH
Q 012683 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD----WPKACYREGAALRLLEKFDEA 421 (458)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~~a~~~~~~~~~~~A 421 (458)
.-|-|.+|.+.-.++++++|.+..+....|.++...+++.++.+.-.+--..--+ ...-|-.-|..+.+.++|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 3456666666666666666666666666666666666666666655544322111 133445566666666777777
Q ss_pred HHHHHHhh
Q 012683 422 ANAFYEGV 429 (458)
Q Consensus 422 ~~~~~~a~ 429 (458)
++.|..-+
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 77666543
No 400
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.96 E-value=0.054 Score=32.85 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=17.9
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
.++.++|.+|...|++++|...+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35566666666666666666666666654
No 401
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=4.5 Score=42.67 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=111.8
Q ss_pred HHHHHHHcCC-HHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCCCCCCCCCCCchHHHHHH
Q 012683 256 PIQVAAARGN-REAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKA 334 (458)
Q Consensus 256 ~l~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (458)
.+..|...|+ .++|++|+=.+. .......++.+-++.++.++-.+....+...+.
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRk---k~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~--------------------- 1194 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARK---KVREPYIDSELIFAYAKTNRLTELEEFIAGPNV--------------------- 1194 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---hhcCccchHHHHHHHHHhchHHHHHHHhcCCCc---------------------
Confidence 4666777776 478888863322 223344555666666666544444443333331
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--------------
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD-------------- 400 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-------------- 400 (458)
..+..-|..+|..+.|+.|--.|. +.+-|..+|..+..+|+|..|++..++|-...-.
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhh
Confidence 224567899999999999999885 3567888999999999999999999988644221
Q ss_pred -----------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 401 -----------WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 401 -----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
+.+-+-.+-.-|...|-|+|-+..++.++-++..+-.....++.++.+.
T Consensus 1267 lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1267 LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 1122223455577788899999999999988888888888888887754
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.81 E-value=0.08 Score=39.30 Aligned_cols=57 Identities=28% Similarity=0.297 Sum_probs=47.2
Q ss_pred HHHhhccHHHHHHHHHHhhccCCC---------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 012683 343 EAFKQKDYLMAVDAYTQAIDFDPS---------DATLLSNRSLCWIRLGQAEHALADAKACRALRP 399 (458)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 399 (458)
..++.++|.+|++.+.+..+.... ...+..++|.++...|++++|+..+++|+++-.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 456889999999998888876432 235678899999999999999999999998754
No 403
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.70 E-value=0.54 Score=44.24 Aligned_cols=98 Identities=14% Similarity=0.073 Sum_probs=79.0
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhcc----CCCchhHHHhHHHHHHh---hCCHHHHHHHHHH-HHHhCCCChHHHHHHH
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDF----DPSDATLLSNRSLCWIR---LGQAEHALADAKA-CRALRPDWPKACYREG 409 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-a~~~~p~~~~~~~~~a 409 (458)
.+.--.|-.-.+|+.-++..+..-.+ .++.+.+-+.+|.++.+ .|+.++|++.+.. +....+.+++.|--.|
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566778899888888776555 45567889999999999 9999999999999 5556778899999999
Q ss_pred HHHHHhh---------hHHHHHHHHHHhhccCCCc
Q 012683 410 AALRLLE---------KFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 410 ~~~~~~~---------~~~~A~~~~~~a~~~~p~~ 435 (458)
.+|...- ..+.|+.+|+++.+.+|+.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 9986543 5688999999999998753
No 404
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.68 E-value=0.42 Score=45.29 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=74.7
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhcc-CC-C--------------------------------chhHHHhHHHHHHhh
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDF-DP-S--------------------------------DATLLSNRSLCWIRL 381 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p-~--------------------------------~~~~~~~~a~~~~~~ 381 (458)
...+.+..++..|+..+|+..++..+.. .. . ...++..+|.-....
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 3456777888888888888888777761 10 0 124566666666666
Q ss_pred ------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH-----------------HHHHHHHHhhccCCC
Q 012683 382 ------GQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD-----------------EAANAFYEGVTLDPE 434 (458)
Q Consensus 382 ------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~-----------------~A~~~~~~a~~~~p~ 434 (458)
+..++++..|.+|++++|++.++|+..|..+...-+.+ .|+..|.+++.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 78899999999999999999999999998886664333 378888888888776
No 405
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.52 Score=41.37 Aligned_cols=107 Identities=13% Similarity=0.012 Sum_probs=88.6
Q ss_pred HhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH-HHH
Q 012683 345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALADAKACRALRPDWPKACYREGAALRLLEKFD-EAA 422 (458)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~-~A~ 422 (458)
++.+.-..|+..-..+|.++|.+..+|..|-.+...++ +..+-++++++.++-+|.+.+.|..+-.+...+|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34467788999999999999999999998877776654 7888899999999999999999999999999999888 777
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 423 NAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 423 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
+..+..+..+..+=-+|....=++...+.
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence 78888888777766667666666555444
No 406
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=0.52 Score=40.96 Aligned_cols=112 Identities=15% Similarity=0.081 Sum_probs=79.2
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHH----HhC--CCCh
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACR----ALR--PDWP 402 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~----~~~--p~~~ 402 (458)
..-.+++-.....-+++.|+..|++++.+-..+ .+.+...+.++.++.+|.+|...+.+-. +.+ |+-.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 334556666778889999999999999864332 4577788899999999999998887743 333 3344
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcc----CCCcHHHHHHHHHHH
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTL----DPENKELVFAFREAV 446 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~ 446 (458)
+++...-.+|.-..+|..|..+|+...+. .|++.....+|-..+
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 55666666677777999999999997765 234444444443333
No 407
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.36 E-value=0.2 Score=45.78 Aligned_cols=62 Identities=19% Similarity=0.112 Sum_probs=30.1
Q ss_pred HHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
|..+|.+|+.+.|.....|+.+|.++...|+.-.|+-+|-+++-....++.+.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554433334445555444444
No 408
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.26 E-value=0.54 Score=43.91 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=59.6
Q ss_pred HHHHhhccCCCchhHHHhHHHHHHhhCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHH
Q 012683 356 AYTQAIDFDPSDATLLSNRSLCWIRLGQ------------AEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN 423 (458)
Q Consensus 356 ~~~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 423 (458)
.|++.++.+|.+..+|..+......+-. .+.-+..+++|++.+|++...+..+-....+..+.+...+
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4666677777777777766655554432 3455667777777777777777777677777777777777
Q ss_pred HHHHhhccCCCcHHHHHHHH
Q 012683 424 AFYEGVTLDPENKELVFAFR 443 (458)
Q Consensus 424 ~~~~a~~~~p~~~~~~~~l~ 443 (458)
-+++++..+|++...|..+-
T Consensus 87 ~we~~l~~~~~~~~LW~~yL 106 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREYL 106 (321)
T ss_pred HHHHHHHHCCCChHHHHHHH
Confidence 77777777777766665443
No 409
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.53 Score=42.20 Aligned_cols=59 Identities=12% Similarity=-0.042 Sum_probs=50.1
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE 427 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 427 (458)
+.-+.-+.-....|++.+|...|..+++..|.+.++...++.++...|++++|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 33444555666789999999999999999999999999999999999999888776643
No 410
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.10 E-value=0.077 Score=32.16 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 402 PKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
..++.++|.+|...|++++|+..+++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999864
No 411
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.09 E-value=2.8 Score=40.05 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=47.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683 375 SLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEG 428 (458)
Q Consensus 375 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 428 (458)
|.-++..|+|.++.-+..=..++.| ++.+|.-+|.+++...+|++|..++...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3445568999999999999999999 9999999999999999999999998754
No 412
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.27 Score=43.63 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=65.6
Q ss_pred HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
..=..+.+.++++.|...-++.+.++|.++.-+--+|.+|.++|-+.-|+.+++..++..|+.+.+-.-++...
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34455677799999999999999999999999999999999999999999999999999999998776655544
No 413
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.98 E-value=0.12 Score=30.67 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=14.7
Q ss_pred HHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 370 LLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
+|..+|.+.+..++|++|+.+|.+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 414
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.94 E-value=1.4 Score=40.47 Aligned_cols=107 Identities=13% Similarity=0.069 Sum_probs=81.5
Q ss_pred HHHHHhhhHHHh----hccHHHHHHHHHHhhccCCCc-hhHHHhHHHHHHhhC-------CHHHHHHHHHHHHHhCCCCh
Q 012683 335 AEAKARGDEAFK----QKDYLMAVDAYTQAIDFDPSD-ATLLSNRSLCWIRLG-------QAEHALADAKACRALRPDWP 402 (458)
Q Consensus 335 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~a~~~~p~~~ 402 (458)
...+..|..++. ..++.+|...|.+|.+..-.. ....+.+|.+|..-. +...|+..|.++-... ++
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~ 187 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP 187 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH
Confidence 345566776665 459999999999999986444 344778888877642 2337999999988877 88
Q ss_pred HHHHHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683 403 KACYREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREA 445 (458)
Q Consensus 403 ~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 445 (458)
.+.+.+|.+|.. ..++.+|..+|.++.+... ....+.++.+
T Consensus 188 ~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~ 232 (292)
T COG0790 188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLM 232 (292)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 899999988854 3489999999999998765 7777777733
No 415
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.58 Score=45.85 Aligned_cols=99 Identities=20% Similarity=0.110 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHhhccCCCchhHHHh--HHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683 349 DYLMAVDAYTQAIDFDPSDATLLSN--RSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFY 426 (458)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 426 (458)
...-++..+...+.++|.++.+... ++..+...+....++-.+..++..+|.+..++.++|.+....|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344777787788888888876443 58888889999999999999999999999999999999998998888887776
Q ss_pred H-hhccCCCcHHHHHHHHHHHH
Q 012683 427 E-GVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 427 ~-a~~~~p~~~~~~~~l~~~~~ 447 (458)
+ +....|++.++...+-.+++
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHH
Confidence 6 88899999999888844444
No 416
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.84 E-value=1.8 Score=36.38 Aligned_cols=83 Identities=13% Similarity=-0.049 Sum_probs=59.8
Q ss_pred HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-cHHHHHHHHHH
Q 012683 370 LLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPE-NKELVFAFREA 445 (458)
Q Consensus 370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 445 (458)
.-..+|..+...+++++|+..++.++..-.+. .-+-.++|+++..+|.+++|+..+...- +++ ........+.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhH
Confidence 34467889999999999999999999654433 3455799999999999999999886432 111 23334455666
Q ss_pred HHHhhhhhc
Q 012683 446 VEAGRKFHG 454 (458)
Q Consensus 446 ~~~~~~~~~ 454 (458)
+...|+..+
T Consensus 169 ll~kg~k~~ 177 (207)
T COG2976 169 LLAKGDKQE 177 (207)
T ss_pred HHHcCchHH
Confidence 666666544
No 417
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.71 E-value=0.16 Score=29.83 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHH--HHHhhccCC
Q 012683 404 ACYREGAALRLLEKFDEAANA--FYEGVTLDP 433 (458)
Q Consensus 404 ~~~~~a~~~~~~~~~~~A~~~--~~~a~~~~p 433 (458)
.++.+|..+...|++++|++. |+-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 445555555555555555555 324444443
No 418
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=93.63 E-value=0.25 Score=34.90 Aligned_cols=48 Identities=17% Similarity=0.380 Sum_probs=31.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 012683 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEEL 79 (458)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~ 79 (458)
..+..|+..|+.++++.+++... -....|..|+...+.+++++|++++
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~~----------------~~~~~l~~AI~~H~n~i~~~l~~~y 55 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKNK----------------PDNDCLEYAIKSHNNEIADWLIENY 55 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhc----------------cHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 34667777777777777775410 0134577777777777777777764
No 419
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=2 Score=40.44 Aligned_cols=105 Identities=10% Similarity=-0.081 Sum_probs=87.1
Q ss_pred HhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh----H
Q 012683 345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ--AEHALADAKACRALRPDWPKACYREGAALRLLEK----F 418 (458)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~----~ 418 (458)
.+..-+++-+.+...++..+|++..+|+.|..+..+.+. +..=++.+.++++.||.+..+|..+-.+..+... .
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence 344467888889999999999999999999999998774 6899999999999999999999777666655443 4
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 419 DEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
.+-+++-.+++..++.+--+|.....++..+
T Consensus 166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred hhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 6667788888888998888888888887755
No 420
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.26 E-value=0.29 Score=47.15 Aligned_cols=76 Identities=14% Similarity=0.028 Sum_probs=65.5
Q ss_pred hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh---HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683 381 LGQAEHALADAKACRALRPDWPKACYREGAALRLLEK---FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 381 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
.+....|+.+|.++++.-|+....|-++|.++.+.+. .-.|+.+-..|++++|-...+++.|..++.++++..++-
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 4567889999999999999999999999999988764 445666677789999999999999999999999887653
No 421
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.18 E-value=0.13 Score=27.61 Aligned_cols=24 Identities=25% Similarity=0.095 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 012683 403 KACYREGAALRLLEKFDEAANAFY 426 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~ 426 (458)
.+++.+|.++...|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666655543
No 422
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.13 E-value=0.13 Score=30.52 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
+.|..+|.+-...++|+.|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999875
No 423
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.98 E-value=3.9 Score=37.29 Aligned_cols=106 Identities=14% Similarity=0.046 Sum_probs=80.7
Q ss_pred chHHHHHHHHHHHhhhHHHhhc-cHHHHHHHHHHhhccC----CC----------chhHHHhHHHHHHhhCCHH---HHH
Q 012683 327 RPEIKKKAAEAKARGDEAFKQK-DYLMAVDAYTQAIDFD----PS----------DATLLSNRSLCWIRLGQAE---HAL 388 (458)
Q Consensus 327 ~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~----p~----------~~~~~~~~a~~~~~~~~~~---~A~ 388 (458)
+...+.-+.-+.+-|...+.++ +|++|+..+++|.++. +. ...++..++.+|...+.++ +|.
T Consensus 28 ~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~ 107 (278)
T PF08631_consen 28 PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKAL 107 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 3455678899999999999999 9999999999999882 21 1357778899999888765 344
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683 389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD 432 (458)
Q Consensus 389 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 432 (458)
...+.+-.--|+.+..++-.-.+....++.+++.+.+.+.+..-
T Consensus 108 ~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 108 NALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 44445555568888877655566666889999999998888653
No 424
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.91 E-value=1.4 Score=44.64 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----hhHHHH
Q 012683 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG---QAEHALADAKACRALRPDWPKACYREGAALRLL----EKFDEA 421 (458)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~----~~~~~A 421 (458)
++..|...|.++-+.. ++.+.+.+|.++..-. ++..|.++|..|.+. .+..+.+++|.+|..- -+...|
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 4555555555555543 4445555555555443 344555555555443 2445555555555322 255555
Q ss_pred HHHHHHhhccC
Q 012683 422 ANAFYEGVTLD 432 (458)
Q Consensus 422 ~~~~~~a~~~~ 432 (458)
..+|+++.+.+
T Consensus 384 ~~~~k~aA~~g 394 (552)
T KOG1550|consen 384 FAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHcc
Confidence 55555555544
No 425
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.82 E-value=1.6 Score=47.32 Aligned_cols=113 Identities=13% Similarity=0.043 Sum_probs=99.6
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
...-|...|..++++.+-+.|.+.+.+|+.--|. +..+....|+.-++.|+.+.+...|+-.+.-.|.-.+.|.-...
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 3456888999999999999999999999999988 77889999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 445 (458)
.-...|+-+-++..|++++.+.=.-..+.+.+..-
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 99999999999999999998765555555554443
No 426
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.68 E-value=0.42 Score=28.04 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=20.0
Q ss_pred hHHHhHHHHHHhhCCHHHHHHH--HHHHHHhCCC
Q 012683 369 TLLSNRSLCWIRLGQAEHALAD--AKACRALRPD 400 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~--~~~a~~~~p~ 400 (458)
+.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456667777777777777777 4366666654
No 427
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.66 E-value=0.68 Score=43.95 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=56.0
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR 395 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 395 (458)
+.....+-|.-+|..|+|.+++-+-....++.| ++.+|-.+|.|.+...+|.+|-.++...-
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 366677889999999999999999999999999 89999999999999999999999987654
No 428
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.34 E-value=0.71 Score=47.08 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-----chhHHHhHHHHHHhhCCHHHHHHHHHHH----------
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-----DATLLSNRSLCWIRLGQAEHALADAKAC---------- 394 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------- 394 (458)
+.+.+..+..+...+--.+++-+++..++.|+++... --..|++.|.-+...++.+.|+++|+++
T Consensus 815 MlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 3344444444444433333334444444444444322 1357899999999999999999999984
Q ss_pred HHhCCCChHHH----------HHHHHHHHHhhhHHHHHHHHHHhh---------------------ccCCCcHHHHHHHH
Q 012683 395 RALRPDWPKAC----------YREGAALRLLEKFDEAANAFYEGV---------------------TLDPENKELVFAFR 443 (458)
Q Consensus 395 ~~~~p~~~~~~----------~~~a~~~~~~~~~~~A~~~~~~a~---------------------~~~p~~~~~~~~l~ 443 (458)
+.-+|...+-| ---|.-+...|+.+.|+..|..|- .....+..+.+.++
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhla 974 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLA 974 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHH
Confidence 23355544444 345777788899999998887762 22356778888899
Q ss_pred HHHHHhhhhhc
Q 012683 444 EAVEAGRKFHG 454 (458)
Q Consensus 444 ~~~~~~~~~~~ 454 (458)
+.|+..++..+
T Consensus 975 R~YEn~g~v~~ 985 (1416)
T KOG3617|consen 975 RMYENDGDVVK 985 (1416)
T ss_pred HHhhhhHHHHH
Confidence 98888877654
No 429
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.21 E-value=1.9 Score=39.21 Aligned_cols=62 Identities=8% Similarity=-0.064 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 387 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
|..+|.+|+.+.|++...|..+|.++...|+.-+|+-+|-+++...-..+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999987654558889999888887
No 430
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.17 E-value=1 Score=43.02 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=69.0
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHH
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE 420 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 420 (458)
-...+..|+.-.|-.-...+++..|.+|.....++.++..+|.|+.|++++.-+=..=..-..+...+-+.+..+|++++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 34456778888888888888999999999999999999999999999998887766544445556666667777777777
Q ss_pred HHHHHHHhhcc
Q 012683 421 AANAFYEGVTL 431 (458)
Q Consensus 421 A~~~~~~a~~~ 431 (458)
|...-.-.+-.
T Consensus 376 a~s~a~~~l~~ 386 (831)
T PRK15180 376 ALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHhcc
Confidence 77665544433
No 431
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.13 E-value=1.5 Score=39.45 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=58.2
Q ss_pred hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
..++..++..+...|+++.++..+++.+..+|-+-.+|..+=.+|+..|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999999999999999988755
No 432
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.09 E-value=0.59 Score=32.64 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
++.+..+..+|..+-+.|+|.+|+.+|+++++
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45667777778888888888888887766554
No 433
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.93 E-value=0.24 Score=26.55 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=17.9
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHH
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAK 392 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~ 392 (458)
.+.+++|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456777888888888888877665
No 434
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.75 E-value=1.9 Score=42.80 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=65.3
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPD------WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF 442 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 442 (458)
.++-+-|.-++++.+|..+++.|...+..-|. +.+....++.||..+.+.+.|.+++.+|-+.+|.++-..+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34556788889999999999999999987664 468888999999999999999999999999999888776655
Q ss_pred HHH
Q 012683 443 REA 445 (458)
Q Consensus 443 ~~~ 445 (458)
-.+
T Consensus 435 ~~~ 437 (872)
T KOG4814|consen 435 LQS 437 (872)
T ss_pred HHH
Confidence 444
No 435
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.65 E-value=0.65 Score=28.65 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 406 YREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 406 ~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
+.+|.+|...|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777777777777777777763
No 436
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=91.57 E-value=0.37 Score=34.01 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=24.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683 58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH 112 (458)
Q Consensus 58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 112 (458)
..+..|+..|+.++++.+++. + .+ ...++..|+...+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~-~-~~------~~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKK-N-KP------DNDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHH-h-cc------HHHHHHHHHHHhhHHHHHHHHHh
Confidence 345555555555555555543 1 10 13345555555555555555554
No 437
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.47 E-value=1.1 Score=40.37 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
.....+.+++..+...++++.+++.+++.+..+|.+-.+|..+-..|.+.|+...|+..|++.-+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345667788889999999999999999999999999999999999999999999999999998764
No 438
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.11 E-value=1.6 Score=38.03 Aligned_cols=62 Identities=18% Similarity=0.044 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhccCC------CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHH
Q 012683 350 YLMAVDAYTQAIDFDP------SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-KACYREGAA 411 (458)
Q Consensus 350 ~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~a~~ 411 (458)
+..|.+.|.+|++... +...+.+.+|.++.+.|++++|++.|.+++...-.+. .....+|+=
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 5667777777776542 2357899999999999999999999999998754433 345555543
No 439
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.99 E-value=5 Score=39.73 Aligned_cols=126 Identities=10% Similarity=-0.064 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-CCCChHHHH
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-RPDWPKACY 406 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~ 406 (458)
+-...+...|......-...|++....-.|++++--...+..+|...+.-....|+..-|-..+.++.++ -|..+..+.
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 3344556677777788889999999999999999999999999999999999999999999999998886 578888888
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 407 REGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 407 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
.-+..-...|++..|...|+....--|+..++-........+.+..+
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence 88999999999999999999998777888777666666666555543
No 440
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.46 E-value=4.7 Score=30.59 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=58.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhhh-----------HHHHHHHHHHhhccCCCcHHHH
Q 012683 374 RSLCWIRLGQAEHALADAKACRALRPDWP---KACYREGAALRLLEK-----------FDEAANAFYEGVTLDPENKELV 439 (458)
Q Consensus 374 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~a~~~~p~~~~~~ 439 (458)
+|.-++..|++-+|++..+..+...+++. -.+..-|.+++.+.. .-.|+++|.++..+.|..+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56778899999999999999999887766 556677878766653 4568899999999999998888
Q ss_pred HHHHHH
Q 012683 440 FAFREA 445 (458)
Q Consensus 440 ~~l~~~ 445 (458)
+.++.=
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 777765
No 441
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.42 E-value=2.2 Score=40.41 Aligned_cols=112 Identities=17% Similarity=0.075 Sum_probs=89.2
Q ss_pred CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-ch-hHHHhHHHHHHhhCCHHHHHHHHHHHHHh-CCC
Q 012683 324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-DA-TLLSNRSLCWIRLGQAEHALADAKACRAL-RPD 400 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~ 400 (458)
+-..+++..--.+++.....+.++|.|..|.+...-.+.++|. || .+.+.+-...++.++|+=-++.++..... ..+
T Consensus 93 ~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~ 172 (360)
T PF04910_consen 93 DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN 172 (360)
T ss_pred CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh
Confidence 3344556677788999999999999999999999999999998 66 46667777777888888778777776552 112
Q ss_pred ----ChHHHHHHHHHHHHhhhH---------------HHHHHHHHHhhccCCCc
Q 012683 401 ----WPKACYREGAALRLLEKF---------------DEAANAFYEGVTLDPEN 435 (458)
Q Consensus 401 ----~~~~~~~~a~~~~~~~~~---------------~~A~~~~~~a~~~~p~~ 435 (458)
-|..-|..+.+++.+++- +.|...+.+|+...|.-
T Consensus 173 ~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 173 WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 345678899999999998 89999999999887753
No 442
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.00 E-value=5 Score=42.92 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=75.2
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
-.+.+++...-....|++|+..|++ +.-.|.-|--|...|.+|.++|+|+|-++.+.-|++.-|++|..-.-.-.+-++
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (932)
T PRK13184 520 ITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYR 598 (932)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 3344444444444578899999988 556677788899999999999999999999999999999998766555444444
Q ss_pred hh-----hHHHHHHHHHHhhccCCCcHHHHH
Q 012683 415 LE-----KFDEAANAFYEGVTLDPENKELVF 440 (458)
Q Consensus 415 ~~-----~~~~A~~~~~~a~~~~p~~~~~~~ 440 (458)
+. .-..|.....-++..-|.......
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 599 LHESLYKHRREALVFMLLALWIAPEKISSRE 629 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccchH
Confidence 43 234455555566777776554443
No 443
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.92 E-value=2.3 Score=40.36 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=15.5
Q ss_pred CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH
Q 012683 364 DPSDATLLSNRSLCWIRLGQAEHALADAKACR 395 (458)
Q Consensus 364 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 395 (458)
.|.....+..++.++...|+++.|-+.+++|+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444445555555555555554444444443
No 444
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.82 E-value=5 Score=36.62 Aligned_cols=97 Identities=18% Similarity=0.065 Sum_probs=71.2
Q ss_pred HHHhhccHHHHHHHHHHhhccC----CCc----hhHHHhHHHHHHhhC-CHHHHHHHHHHHHHh----CC---CC-----
Q 012683 343 EAFKQKDYLMAVDAYTQAIDFD----PSD----ATLLSNRSLCWIRLG-QAEHALADAKACRAL----RP---DW----- 401 (458)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~----~p---~~----- 401 (458)
..+++|+++.|..+|.|+-.+. |+. ...+|+.|....+.+ ++++|+..+++|..+ .+ ..
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 3578899999999999987654 332 368899999999999 999999999999887 22 21
Q ss_pred --hHHHHHHHHHHHHhhhHHHHH---HHHHHhhccCCCcHHHH
Q 012683 402 --PKACYREGAALRLLEKFDEAA---NAFYEGVTLDPENKELV 439 (458)
Q Consensus 402 --~~~~~~~a~~~~~~~~~~~A~---~~~~~a~~~~p~~~~~~ 439 (458)
...+..++.+|...+.++... ..++.+-.-.|+.+...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 345667888888877765444 44444444567766666
No 445
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.77 E-value=17 Score=36.63 Aligned_cols=113 Identities=17% Similarity=0.134 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC------------------chhHHHhHHHHHHhhCCHHHHHHH
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS------------------DATLLSNRSLCWIRLGQAEHALAD 390 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~~a~~~~~~~~~~~A~~~ 390 (458)
....-++-+.+-|..-.+..+++.|+...+.|...-.. +..+|..++..-...|-++.-...
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 34456777888888888999999999999888865211 245888899999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC--CCcHHHHHH
Q 012683 391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD--PENKELVFA 441 (458)
Q Consensus 391 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~ 441 (458)
|++.+.+.--.|..-.+.|..+..-.-|++|-+.|++.+.+. |.-.++|..
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t 552 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT 552 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence 999999998899999999999999999999999999999885 444555543
No 446
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.74 E-value=4.2 Score=41.22 Aligned_cols=92 Identities=22% Similarity=0.166 Sum_probs=66.9
Q ss_pred HHHhhhHHHhh---ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhh----CCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 337 AKARGDEAFKQ---KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRL----GQAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 337 ~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
.+..|..+... .++..|..+|..|... .+..+.+++|.||..- .+...|..++.+|...+ ++.+.+.++
T Consensus 328 ~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~ 403 (552)
T KOG1550|consen 328 QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLG 403 (552)
T ss_pred HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHH
Confidence 44445555443 3678999999988875 4788999999998763 47899999999999998 555666666
Q ss_pred HHHHHh-hhHHHHHHHHHHhhccC
Q 012683 410 AALRLL-EKFDEAANAFYEGVTLD 432 (458)
Q Consensus 410 ~~~~~~-~~~~~A~~~~~~a~~~~ 432 (458)
..+... ++++.+.-.+...-.+.
T Consensus 404 ~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 404 AFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHccccccHHHHHHHHHHHhh
Confidence 655433 88888887666655443
No 447
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.70 E-value=3.6 Score=38.50 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=68.2
Q ss_pred HHhhccHHHHHHHHHHhhcc---CCCc-----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683 344 AFKQKDYLMAVDAYTQAIDF---DPSD-----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL 415 (458)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 415 (458)
....|+|+.|+...+...+. .++- ..++.-.+.... --+...|..+..+++++.|+...+-.--+.++++.
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d 276 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRD 276 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence 46779999999987765542 2221 223333333332 23588899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHH
Q 012683 416 EKFDEAANAFYEGVTLDPENKELV 439 (458)
Q Consensus 416 ~~~~~A~~~~~~a~~~~p~~~~~~ 439 (458)
|+...+-..++.+-+.+|. +++.
T Consensus 277 ~~~rKg~~ilE~aWK~ePH-P~ia 299 (531)
T COG3898 277 GNLRKGSKILETAWKAEPH-PDIA 299 (531)
T ss_pred cchhhhhhHHHHHHhcCCC-hHHH
Confidence 9999999999988888775 4433
No 448
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.38 E-value=11 Score=31.21 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=81.4
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----chhHHHhHHHHHHhhCCHHHHHHHHHHHH-HhCCCChHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLCWIRLGQAEHALADAKACR-ALRPDWPKACYREG 409 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~a 409 (458)
-+....|....++|+-.+|+..|..+-.-.|- .-.+...-|.++...|.|+....-.+..- .-+|-..-+---||
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALg 174 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALG 174 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHh
Confidence 34567788889999999999999986654432 12345566778888899988776665543 23455555666789
Q ss_pred HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
.+-++.|+|..|...|..... +.+.+....+.+++...+
T Consensus 175 lAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 175 LAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 999999999999999998765 555566655666655544
No 449
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.36 E-value=1.6 Score=35.04 Aligned_cols=50 Identities=18% Similarity=0.042 Sum_probs=27.4
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF 418 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~ 418 (458)
.....+|...+..|++.-|...++.++..+|++.++..-++.++..+|.-
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 44455555555666666666666666666666666666666666555543
No 450
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.32 E-value=5.4 Score=36.59 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=41.3
Q ss_pred HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----h
Q 012683 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACYREGAALRL----L 415 (458)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~ 415 (458)
.+..++|..|+..|.++-.. .++...+.++.+|.. ..+..+|+..|. ...+..++.+.+.+|.+|.. .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcc
Confidence 34445555555555554442 122445555555544 223455555555 33334445555555555544 3
Q ss_pred hhHHHHHHHHHHhhcc
Q 012683 416 EKFDEAANAFYEGVTL 431 (458)
Q Consensus 416 ~~~~~A~~~~~~a~~~ 431 (458)
.++.+|..+|.+|.+.
T Consensus 127 ~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 127 LDLVKALKYYEKAAKL 142 (292)
T ss_pred cCHHHHHHHHHHHHHc
Confidence 3555555555555544
No 451
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=88.61 E-value=0.94 Score=39.49 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=66.1
Q ss_pred HHhhccHHHHHHHHHHhhccC---CCch---------hHHHhHHHHHHhhCCHHH-H-HHHHHHHHH--hCCCChHH--H
Q 012683 344 AFKQKDYLMAVDAYTQAIDFD---PSDA---------TLLSNRSLCWIRLGQAEH-A-LADAKACRA--LRPDWPKA--C 405 (458)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~---p~~~---------~~~~~~a~~~~~~~~~~~-A-~~~~~~a~~--~~p~~~~~--~ 405 (458)
+|.-|+|+.|++....||+.+ |+.. +-...-+....+.|+.-+ + ...+..+.. -.|+-..+ |
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 478899999999999999975 3321 223334444555555221 1 112222221 13554444 4
Q ss_pred HHHHHHH---------HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 406 YREGAAL---------RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 406 ~~~a~~~---------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
-..|..+ ...++...|+..+++|++++|. ......+..+..+++..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence 4555555 2456888999999999999976 45566667776666543
No 452
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.56 E-value=8.7 Score=37.16 Aligned_cols=96 Identities=20% Similarity=0.154 Sum_probs=71.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-c--hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---------
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-D--ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW--------- 401 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--------- 401 (458)
++-..-.|.....-+.|++|...|..|+++... + +.+..|+|..|++.++-+.-.+.++. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 344455677777788999999999999987543 3 45566899999998876544444333 34442
Q ss_pred -hHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683 402 -PKACYREGAALRLLEKFDEAANAFYEGVTLD 432 (458)
Q Consensus 402 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 432 (458)
..++|-.|...+..+++.||...+++.++..
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4567888999999999999999999999875
No 453
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.56 E-value=1 Score=36.04 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=42.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA 384 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~ 384 (458)
++.+.+.+...+.+|+|.-|.+....++..+|++..+...++.++.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999999999999999998777643
No 454
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.56 E-value=4.9 Score=34.18 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=56.8
Q ss_pred HhhccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhhhHH
Q 012683 345 FKQKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD----WPKACYREGAALRLLEKFD 419 (458)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~~a~~~~~~~~~~ 419 (458)
+.+-.-++|...|-++-... -++++..+.+|.-|. ..+.++|+..+-+++.+.+. +++.+..++.+++.+|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33333456666665533221 246888889988776 67899999999999988543 5899999999999999999
Q ss_pred HHH
Q 012683 420 EAA 422 (458)
Q Consensus 420 ~A~ 422 (458)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 455
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.45 E-value=4.1 Score=41.91 Aligned_cols=95 Identities=18% Similarity=0.107 Sum_probs=72.2
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhc----------cCCC----------chhHHHhHHHHHHhhCCHHHHHHHHHHHH
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAID----------FDPS----------DATLLSNRSLCWIRLGQAEHALADAKACR 395 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~----------~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 395 (458)
.+.+.+.-+-.++|.+.|+++|+++-. -+|. ++.+|.--|+-....|+.+.|+.+|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 356666667777788888888876532 2333 44566667888888999999999988764
Q ss_pred ---------------------HhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 396 ---------------------ALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 396 ---------------------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
.....+-.+-|.+|+.|...|++.+|+..|.+|-.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 22456778899999999999999999999887643
No 456
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.31 E-value=15 Score=34.76 Aligned_cols=85 Identities=8% Similarity=0.016 Sum_probs=72.0
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHH---hhhHHHHHHHHHHhh-ccCCCcHHH
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRAL----RPDWPKACYREGAALRL---LEKFDEAANAFYEGV-TLDPENKEL 438 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~-~~~p~~~~~ 438 (458)
++.+..++=.+|....+|+.=++..+..-.+ -++.+..-+..|+++-+ .|+.++|+..+..++ ...+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4667778888899999999999988888777 56677888899999999 999999999999944 556778999
Q ss_pred HHHHHHHHHHhhh
Q 012683 439 VFAFREAVEAGRK 451 (458)
Q Consensus 439 ~~~l~~~~~~~~~ 451 (458)
+-.++++++.+-.
T Consensus 220 ~gL~GRIyKD~~~ 232 (374)
T PF13281_consen 220 LGLLGRIYKDLFL 232 (374)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999997743
No 457
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=88.15 E-value=0.77 Score=42.16 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=71.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
.....+.+...++.+.|..|+..-..+++.++....+++.+++.+..+.++++|++++..+.+..|++....-.+..+-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34445567777888999999999899999999999999999999999999999999999999999999876666555555
Q ss_pred HhhhHH
Q 012683 414 LLEKFD 419 (458)
Q Consensus 414 ~~~~~~ 419 (458)
...++.
T Consensus 355 ~~~~~~ 360 (372)
T KOG0546|consen 355 KKKQYN 360 (372)
T ss_pred HHHHHH
Confidence 444443
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.13 E-value=2.5 Score=40.79 Aligned_cols=61 Identities=20% Similarity=0.156 Sum_probs=54.4
Q ss_pred hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-HHHHHHHHHHHHHhCCCChHHHH
Q 012683 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-AEHALADAKACRALRPDWPKACY 406 (458)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~ 406 (458)
+.+.|.+--..|.+++...|+++.+|..-|.-.+..+. .+.|...+.++++.+|++++.|.
T Consensus 117 k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 44558899999999999999999999999988888776 89999999999999999998764
No 459
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=88.10 E-value=11 Score=34.65 Aligned_cols=89 Identities=17% Similarity=0.066 Sum_probs=56.7
Q ss_pred HHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--------------C---------
Q 012683 343 EAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR--------------P--------- 399 (458)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------------p--------- 399 (458)
..++.++..+-|..-..|++++|..+.+|..+|.- ......+|.+.+++|++.. +
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRD 270 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRD 270 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcc
Confidence 44566677777777777888888887777776542 2334455556666555331 0
Q ss_pred CChHHH--HHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683 400 DWPKAC--YREGAALRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 400 ~~~~~~--~~~a~~~~~~~~~~~A~~~~~~a~~~~p 433 (458)
.+...| .++|.|-.++|+..+|.+.++...+-.|
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 112222 3677888888888888888877766555
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.00 E-value=1 Score=42.85 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=42.0
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCC---------CchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDP---------SDATLLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
+.-..+.+.--|||..|++..+- |+++. -....+|..|.||+.++||.+|++.|...+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677888888887654 33322 2346788888888888888888888888774
No 461
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=11 Score=35.75 Aligned_cols=108 Identities=16% Similarity=0.124 Sum_probs=85.7
Q ss_pred HhhccH-HHHHHHHHHhhccCCCchhHHHhHHHHHHh-hC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 345 FKQKDY-LMAVDAYTQAIDFDPSDATLLSNRSLCWIR-LG-----------QAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 345 ~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~-----------~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
-+.+.| .++++.-.+.+..+|+...+|..+-.++.. +- -.++-+.....+++.+|++.-+|+.+..+
T Consensus 39 r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~ 118 (421)
T KOG0529|consen 39 REAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWV 118 (421)
T ss_pred HhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 344555 458888888888999988888766444433 22 35667788888999999999999999999
Q ss_pred HHHhhh--HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 412 LRLLEK--FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 412 ~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
+.+.+. +..-++...++++.+|.+-.+|.....+..+..+.
T Consensus 119 L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 119 LQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 987764 67788899999999999999999988888877665
No 462
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.23 E-value=19 Score=37.65 Aligned_cols=98 Identities=14% Similarity=0.006 Sum_probs=69.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC---------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS---------DATLLSNRSLCWIRLGQAEHALADAKACRALRPDW--- 401 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--- 401 (458)
.+-....+-......+|.+|-....++...-|. .....-.+|.+....|++++|.+..+.++..=|..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 334455666667777888877777666654333 13455567888888888888888888888765543
Q ss_pred --hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 402 --PKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
..++...|.+..-.|+++.|+...+.+.+.
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 456667888888888888888888877765
No 463
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.08 E-value=13 Score=34.98 Aligned_cols=92 Identities=25% Similarity=0.213 Sum_probs=70.9
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHH--HHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRS--LCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a--~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..-.++...-.|+|+.|.+.|+..+. +|+. ..+-.+| .--...|..+.|..+.+.|-..-|.-+=+..-.-.....
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~ 200 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA 200 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh
Confidence 34567778889999999999988664 3332 2222232 223458999999999999999999998888877788899
Q ss_pred hhhHHHHHHHHHHhhc
Q 012683 415 LEKFDEAANAFYEGVT 430 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~ 430 (458)
.|+|+.|++.++....
T Consensus 201 ~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 201 AGDWDGALKLVDAQRA 216 (531)
T ss_pred cCChHHHHHHHHHHHH
Confidence 9999999998876543
No 464
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.95 E-value=7.1 Score=32.80 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=55.0
Q ss_pred hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
..++..+|.-|.+.|+.++|++.|.++....... ...++++-++....+++......+.++-.+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3678899999999999999999999988865433 467788899999999999999999888654
No 465
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.72 E-value=1.2 Score=31.27 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF 363 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 363 (458)
++.+..+..+|..+-+.|+|++|+.+|..+++.
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456777888888888888888888888877763
No 466
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.17 E-value=1.6 Score=41.65 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=44.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHH--------HhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 374 RSLCWIRLGQAEHALADAKACR--------ALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 374 ~a~~~~~~~~~~~A~~~~~~a~--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
+..++.-+|+|..|++.++..= +.-+-+...||..|++|.++++|.+|++.|...+-
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777999999999876531 11234567889999999999999999999988763
No 467
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=86.05 E-value=4.1 Score=31.27 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=54.8
Q ss_pred hHHHhHH--HHHHhhCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---
Q 012683 369 TLLSNRS--LCWIRLGQAEHALADAKACRALRPD------------WPKACYREGAALRLLEKFDEAANAFYEGVTL--- 431 (458)
Q Consensus 369 ~~~~~~a--~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--- 431 (458)
.+|..++ .-.+.-|.|++|...|++|....-+ +.-.|-.++.++..+|+|++++..-.+++..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3445443 3455678999999999999977422 2345667999999999999999888887753
Q ss_pred ----CCCcHH----HHHHHHHHHHHhhhhhc
Q 012683 432 ----DPENKE----LVFAFREAVEAGRKFHG 454 (458)
Q Consensus 432 ----~p~~~~----~~~~l~~~~~~~~~~~~ 454 (458)
+.+... +.+..+.++..+++.++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~e 118 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEE 118 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHH
Confidence 333332 23444555555555443
No 468
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.88 E-value=2.3 Score=40.80 Aligned_cols=96 Identities=16% Similarity=0.074 Sum_probs=74.8
Q ss_pred hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH
Q 012683 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD 419 (458)
Q Consensus 340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 419 (458)
.+..+-..|+|+++.....-+-..-..-....--+-....++|++++|+....-.+.-+-..++...--|..-..+|-++
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence 34455567899999888776665544444444445566778999999999999998888888888777777888999999
Q ss_pred HHHHHHHHhhccCCCc
Q 012683 420 EAANAFYEGVTLDPEN 435 (458)
Q Consensus 420 ~A~~~~~~a~~~~p~~ 435 (458)
+|.-++++.+.++|..
T Consensus 409 ~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 409 KSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHhccCChh
Confidence 9999999999988754
No 469
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.82 E-value=8.9 Score=33.03 Aligned_cols=62 Identities=19% Similarity=0.104 Sum_probs=56.3
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP 402 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 402 (458)
...+.+.+...+||...+.-++..|.+......+=+.+.-+|+|++|...++-+-++.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44677889999999999999999999998888888889999999999999999999999874
No 470
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.80 E-value=1.7 Score=26.83 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=23.3
Q ss_pred HHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 371 LSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 371 ~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
.+.+|.+|+.+|+++.|...+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999995
No 471
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.56 E-value=6.1 Score=36.23 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=75.5
Q ss_pred hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhhhHHHHHHH
Q 012683 347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL--RPDWPKACYREGAALRLLEKFDEAANA 424 (458)
Q Consensus 347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~ 424 (458)
.-+|..=...|+-...+.| +|.+-.|++.+..+..-...++...+..... =..+..++--+|-.+.++|+.++|...
T Consensus 309 dtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 309 DTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 3467776677776555554 5888889999998888888888888776654 233455566789999999999999999
Q ss_pred HHHhhccCCCcHHHHHHHHHH
Q 012683 425 FYEGVTLDPENKELVFAFREA 445 (458)
Q Consensus 425 ~~~a~~~~p~~~~~~~~l~~~ 445 (458)
|++++.+.++..+..+.....
T Consensus 388 ydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 388 YDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHHHHHhcCChHHHHHHHHHH
Confidence 999999998888776655443
No 472
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.42 E-value=3 Score=38.53 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=54.4
Q ss_pred CCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC--------CchhHHHhHHHHHHhhCCHHHHHH
Q 012683 323 LPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP--------SDATLLSNRSLCWIRLGQAEHALA 389 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~ 389 (458)
.+.......+.++.+...|+.++..++|++|...|+.|..+.. +...++|..|.+++++++++.++-
T Consensus 30 ~~n~~s~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 30 TENLESQKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred CccchhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344446788899999999999999999999999999998743 246788888999888887776654
No 473
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=6.1 Score=34.99 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683 350 YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAE-HALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEG 428 (458)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 428 (458)
..+-++.+++.++-+|.+..+|..|-.+....|++. .-++..+.++..+..+..+|-.+--+....+.|+.-+.+..+.
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455666666666777777777666666666666 6666666677766666666666666666666555544444333
No 474
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.23 E-value=3.1 Score=37.31 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=39.4
Q ss_pred HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683 370 LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE 427 (458)
Q Consensus 370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 427 (458)
++...+..|...|.+.+|++..+++++++|-+...+..+-.++..+|+--.|.+.|.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 4445566677777777777777777777777777777777777777775555555443
No 475
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.16 E-value=2.3 Score=40.06 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=58.9
Q ss_pred hhCCHHHHHHHHHHHHHhC-CCCh--------H--HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 380 RLGQAEHALADAKACRALR-PDWP--------K--ACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 380 ~~~~~~~A~~~~~~a~~~~-p~~~--------~--~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
..|+|..|++.|.+.-.++ |..+ . .--.+..||.++++.+.|+..-.+.+.++|.+..-+...+.|..+
T Consensus 195 Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~ 274 (569)
T PF15015_consen 195 AAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRR 274 (569)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHH
Confidence 3455555555555554443 2221 1 113688899999999999999999999999999999999999999
Q ss_pred hhhhhcCCC
Q 012683 449 GRKFHGTDK 457 (458)
Q Consensus 449 ~~~~~~~~~ 457 (458)
+.++.++.+
T Consensus 275 LeRy~eAar 283 (569)
T PF15015_consen 275 LERYSEAAR 283 (569)
T ss_pred HHHHHHHHH
Confidence 999887654
No 476
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.14 E-value=9.8 Score=35.55 Aligned_cols=81 Identities=9% Similarity=-0.024 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHH--hhhHHHHHHHHH
Q 012683 350 YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA-LRL--LEKFDEAANAFY 426 (458)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-~~~--~~~~~~A~~~~~ 426 (458)
.+.-+..|++|++.+|++..++..+=.+..+..+.++..+-+++++..+|+++..|...-.. ... .-.++.-...|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45678889999999999999999888888899999999999999999999999887643332 222 224556666666
Q ss_pred Hhhc
Q 012683 427 EGVT 430 (458)
Q Consensus 427 ~a~~ 430 (458)
+++.
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 6654
No 477
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.82 E-value=2.8 Score=37.62 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=50.7
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKA 393 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 393 (458)
+...+..|...|.|.+|++..+++++++|-+...+..+-..+..+|+--.|++.|.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 455677788899999999999999999999999999999999999998888777665
No 478
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=84.23 E-value=2.2 Score=38.51 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=58.8
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHh-HHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSN-RSLCWIRLGQAEHALADAKACRALRPDWPKACY 406 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 406 (458)
|...+.-.-+.+.|.+--..|.++++..|.+.++|.. .+.=+...++++.+...|.++++++|++|..|+
T Consensus 110 w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 110 WSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4444444456678888889999999999999999987 566677789999999999999999999998764
No 479
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.99 E-value=2.9 Score=45.24 Aligned_cols=122 Identities=14% Similarity=0.166 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhh--------ccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-----
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAI--------DFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL----- 397 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----- 397 (458)
...+...++.|+.....+.|.+|.+ ..+++ .+.|..+..|..++..+.+++++++|+....+|.-+
T Consensus 929 ~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen 929 VSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred cchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc
Confidence 3567888999999999999998888 44433 346778899999999999999999999999988644
Q ss_pred ---CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHhhhhh
Q 012683 398 ---RPDWPKACYREGAALRLLEKFDEAANAFYEGVTL--------DPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 398 ---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
-|+....|.+++...+..++...|+..+.++.++ .|.-.....+++.++..+++++
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH
Confidence 2556788999999989999999999888877653 3444455566777666555543
No 480
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.69 E-value=2 Score=23.87 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHHhhccCCCchhHHHhHH
Q 012683 348 KDYLMAVDAYTQAIDFDPSDATLLSNRS 375 (458)
Q Consensus 348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a 375 (458)
|+++.|...|++++...|.++.+|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3455666666666666666666665544
No 481
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=83.16 E-value=14 Score=26.11 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
..+..+..+|..+-+.|+|++|+.+|.++|+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4456677777777778888888877766554
No 482
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.09 E-value=12 Score=36.54 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=15.7
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHh
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQA 360 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~a 360 (458)
.|+..|..+...|+++-|.++|+++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5666666666666666666666553
No 483
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.98 E-value=2.5 Score=29.04 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
+.+-.+...|..+-+.|+|++|+..|.++++
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566677777778888888888888877665
No 484
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.73 E-value=16 Score=34.65 Aligned_cols=97 Identities=23% Similarity=0.188 Sum_probs=76.4
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----C---C-CCh
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL----R---P-DWP 402 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~---p-~~~ 402 (458)
-..+...|.-|..-|+++.|+..|.++=+.+... ...+.|.-.+.+.+|+|.....+..+|.+- . + -.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4567788999999999999999999976665443 346677778888899999988888888765 1 1 134
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
+..-.-|.++..+++|..|..+|..+-.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5667788899999999999999987754
No 485
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=82.68 E-value=26 Score=35.36 Aligned_cols=97 Identities=11% Similarity=0.018 Sum_probs=66.0
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC--CChHH---HHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP--DWPKA---CYREGAA 411 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~---~~~~a~~ 411 (458)
+-..+...-.-|-++..-..|.+.+++---.|.+..|.|.-+..-.-+++|.+.|++.+.+-| .-.+. |+.....
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 333444444557777777778888877777777888888877777778888888888777753 22222 3444555
Q ss_pred HHHhhhHHHHHHHHHHhhccCC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p 433 (458)
.+.--..+.|...|++|++..|
T Consensus 560 rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcCC
Confidence 5555577788888888887766
No 486
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.06 E-value=11 Score=26.41 Aligned_cols=38 Identities=24% Similarity=0.209 Sum_probs=19.1
Q ss_pred HHhHHHHHHhhCCHHHHHHHHHHH-------HHhCCCChHHHHHH
Q 012683 371 LSNRSLCWIRLGQAEHALADAKAC-------RALRPDWPKACYRE 408 (458)
Q Consensus 371 ~~~~a~~~~~~~~~~~A~~~~~~a-------~~~~p~~~~~~~~~ 408 (458)
+..+|.-+-+.|++.+|+..|+++ +...|+.+.-...+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr 53 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYE 53 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 333444444555555555555444 44567666544333
No 487
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=81.89 E-value=38 Score=34.20 Aligned_cols=84 Identities=14% Similarity=0.027 Sum_probs=64.2
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHH
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE 420 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 420 (458)
...+.++...++|....+..+.-........+..|..+-..++.+.|-..|++.+..+|+ .+++.-|+-+++.|-..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 92 (578)
T PRK15490 15 CLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKD 92 (578)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhH
Confidence 334455566677777666666555556667777888888888888999999999888888 678888888888888888
Q ss_pred HHHHHH
Q 012683 421 AANAFY 426 (458)
Q Consensus 421 A~~~~~ 426 (458)
|...++
T Consensus 93 ~~~~~~ 98 (578)
T PRK15490 93 AQLILK 98 (578)
T ss_pred HHHHHH
Confidence 888777
No 488
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.82 E-value=2.1 Score=29.96 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF 363 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 363 (458)
.++..+..+|...=..|+|++|+..|..|++.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 45666777777777778888888888777764
No 489
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.18 E-value=43 Score=34.52 Aligned_cols=110 Identities=9% Similarity=-0.023 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhHHHhh-ccHHHHHHHHHHhhccCCC--c----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC---
Q 012683 331 KKKAAEAKARGDEAFKQ-KDYLMAVDAYTQAIDFDPS--D----ATLLSNRSLCWIRLGQAEHALADAKACRALRPD--- 400 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--- 400 (458)
..++......|..++.. .+++.|...+++++.+... . ...-+.++.++.+.+... |+..++++|+.--+
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 46678889999999955 8999999999999988743 2 234556788888888777 99999999987554
Q ss_pred -ChHHHHHHHHH-HH-HhhhHHHHHHHHHHhhccC--CCcHHHHHH
Q 012683 401 -WPKACYREGAA-LR-LLEKFDEAANAFYEGVTLD--PENKELVFA 441 (458)
Q Consensus 401 -~~~~~~~~a~~-~~-~~~~~~~A~~~~~~a~~~~--p~~~~~~~~ 441 (458)
.....+++-.+ +. ..+++..|++.++....+. ++++.+...
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 22223333322 22 2379999999999887765 455554433
No 490
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.08 E-value=9.3 Score=40.52 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=54.2
Q ss_pred CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 366 SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
+.+.+|..+|.+.++.|...+|++.|-+| ++|..|...-.+..+.|.|++-..++..|-+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 45789999999999999999999998664 77888999999999999999999999888754
No 491
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.04 E-value=79 Score=33.42 Aligned_cols=86 Identities=17% Similarity=0.003 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC----CCC
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-----ATLLSNRSLCWIRLGQAEHALADAKACRALR----PDW 401 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----p~~ 401 (458)
...++..--+|.+...++++++|++..+.++..-|.+ ..++...|.+..-.|++++|......+.++. ..+
T Consensus 455 ~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 455 DLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence 3456666678889999999999999999999987764 4578888999999999999999999998873 333
Q ss_pred hHHH--HHHHHHHHHhh
Q 012683 402 PKAC--YREGAALRLLE 416 (458)
Q Consensus 402 ~~~~--~~~a~~~~~~~ 416 (458)
..++ +-.+.++...|
T Consensus 535 l~~~~~~~~s~il~~qG 551 (894)
T COG2909 535 LALWSLLQQSEILEAQG 551 (894)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3322 45677778888
No 492
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=80.19 E-value=9.9 Score=28.91 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ 383 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 383 (458)
..+++......|-..+-.|+|..|.+...++-+..+..+-.|..-|++-..+|+
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 456677788888888888999999998888877655555555555666655554
No 493
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.76 E-value=13 Score=32.06 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=55.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH
Q 012683 376 LCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436 (458)
Q Consensus 376 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 436 (458)
.-+++.+...+|+...+.-++-+|.+...-..+-..+.-.|+|+.|..-++-+-.+.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3566788999999999999999999998888888999999999999999999999999864
No 494
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.25 E-value=61 Score=31.10 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch--hHHHhHHHHHHh--hCCHHHHHHHHHHHHHh
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA--TLLSNRSLCWIR--LGQAEHALADAKACRAL 397 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~--~~~~~~A~~~~~~a~~~ 397 (458)
.......+.++..+|+.++|..|...|...++.-|... ..+..++.+|.. .-+|.+|.+.+++.+..
T Consensus 128 ~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 128 EVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556778899999999999999999999988534433 466666666654 67899999999998876
No 495
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=78.22 E-value=18 Score=39.52 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=92.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC--------CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-----
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD--------PSDATLLSNRSLCWIRLGQAEHALADAKACRALR----- 398 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----- 398 (458)
..++.++..+..+.+.+++++|+..-.+|.-+. |+....|.+++...+..+....|+..+.++..+.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 346677888999999999999999888877642 4456789999999999999999999999998762
Q ss_pred ---CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC--------CcHHHHHHHHHHHHHhhhh
Q 012683 399 ---PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP--------ENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 399 ---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~~~~~l~~~~~~~~~~ 452 (458)
|.-.-...+++.++..+++++.|+++.+.|++.+- .....+..++++...++++
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~df 1115 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDF 1115 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHH
Confidence 33345557889999999999999999999987531 2234455555555555544
No 496
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=78.08 E-value=32 Score=32.78 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC-----CchhHHHhHHHHHHh--hCCHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP-----SDATLLSNRSLCWIR--LGQAEHALADAK 392 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~a~~~~~--~~~~~~A~~~~~ 392 (458)
......+.++..+|++++|..|...|+++++..+ .....+..++.+|.. .-++++|.+.++
T Consensus 128 v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 128 VEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3345556788899999999999999999998754 234566677776665 668889999888
No 497
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=77.70 E-value=13 Score=36.50 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=34.7
Q ss_pred hhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 012683 360 AIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGV 429 (458)
Q Consensus 360 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 429 (458)
-|+.+|.+..+|+.+-.-+... -++++.+.|++.+..-|..+.+|..-........+|+.-...|.+||
T Consensus 12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445555555555543333222 55555555555555555555555555555555555555555544444
No 498
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=77.19 E-value=4.5 Score=28.38 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
+.+..+..+|...-..|+|++|+..|.++++
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777777777788888888888777665
No 499
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.14 E-value=4.9 Score=22.11 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683 417 KFDEAANAFYEGVTLDPENKELVFAF 442 (458)
Q Consensus 417 ~~~~A~~~~~~a~~~~p~~~~~~~~l 442 (458)
+++.|...|++++...|.++..+..+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34444445555554444444444443
No 500
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.82 E-value=5.9 Score=33.69 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=42.9
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCC----chhHHHhHHHHHHhhCCHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLCWIRLGQAEHALA 389 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~ 389 (458)
....|. ++.+.+.++|+..|-+++++.+. +++++..+|.++.+.++++.|.-
T Consensus 144 q~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 144 QYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 344444 45578999999999999998654 48999999999999999999863
Done!