Query 012683
Match_columns 458
No_of_seqs 397 out of 5540
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 14:13:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdy_A 2-5A-dependent ribonucl 100.0 3.6E-44 1.2E-48 329.8 34.1 260 12-280 3-280 (285)
2 3d9h_A CDNA FLJ77766, highly s 100.0 6.3E-45 2.2E-49 334.6 24.3 269 7-278 8-278 (285)
3 1n11_A Ankyrin; clathrin, BAND 100.0 9.9E-44 3.4E-48 347.4 33.1 302 3-317 3-306 (437)
4 1n11_A Ankyrin; clathrin, BAND 100.0 7.8E-43 2.7E-47 341.1 33.5 289 15-316 48-371 (437)
5 4g8k_A 2-5A-dependent ribonucl 100.0 3.5E-42 1.2E-46 324.6 36.0 289 11-317 22-329 (337)
6 3utm_A Tankyrase-1; tankyrase, 100.0 5.6E-42 1.9E-46 325.0 31.7 282 3-294 13-320 (351)
7 1yyh_A HN1;, notch 1, ankyrin 100.0 1.7E-42 5.8E-47 313.0 23.7 229 49-278 3-248 (253)
8 2xai_A ASB-9, ankyrin repeat a 100.0 5E-42 1.7E-46 311.3 25.7 220 55-277 2-221 (261)
9 1k1a_A B-cell lymphoma 3-encod 100.0 8.2E-42 2.8E-46 306.3 23.4 227 50-276 3-239 (241)
10 2fo1_E LIN-12 protein; beta-ba 100.0 7.2E-43 2.5E-47 333.4 17.3 255 12-278 92-371 (373)
11 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-40 3.7E-45 306.5 30.3 260 55-317 4-281 (285)
12 3b7b_A Euchromatic histone-lys 100.0 7.3E-41 2.5E-45 299.3 26.4 224 49-273 4-230 (237)
13 3aji_A 26S proteasome non-ATPa 100.0 3.8E-41 1.3E-45 299.9 23.7 225 53-277 3-229 (231)
14 3ljn_A Hypothetical protein; a 100.0 2.2E-41 7.5E-46 322.7 18.6 227 49-278 13-269 (364)
15 1oy3_D Transcription factor in 100.0 3.7E-40 1.3E-44 302.7 24.0 248 49-298 2-269 (282)
16 4b93_B Ankyrin repeat domain-c 100.0 4.4E-41 1.5E-45 305.5 16.2 223 52-275 7-241 (269)
17 2xai_A ASB-9, ankyrin repeat a 100.0 4.9E-40 1.7E-44 298.2 22.0 247 13-273 2-258 (261)
18 3aji_A 26S proteasome non-ATPa 100.0 3.4E-39 1.2E-43 287.3 24.9 223 15-246 7-231 (231)
19 3ljn_A Hypothetical protein; a 100.0 1.9E-40 6.4E-45 316.2 17.1 262 3-276 9-312 (364)
20 3eu9_A Huntingtin-interacting 100.0 7.8E-39 2.7E-43 286.5 25.5 227 51-278 4-235 (240)
21 3d9h_A CDNA FLJ77766, highly s 100.0 5.6E-39 1.9E-43 295.0 23.8 253 52-311 11-275 (285)
22 2fo1_E LIN-12 protein; beta-ba 100.0 4.9E-40 1.7E-44 313.8 17.1 297 11-314 34-371 (373)
23 2dzn_A Probable 26S proteasome 100.0 5.6E-39 1.9E-43 285.3 22.5 217 56-275 2-227 (228)
24 3utm_A Tankyrase-1; tankyrase, 100.0 7.2E-38 2.4E-42 296.7 30.4 252 13-278 57-334 (351)
25 4g8k_A 2-5A-dependent ribonucl 100.0 6.7E-38 2.3E-42 295.3 30.0 251 14-279 59-327 (337)
26 1yyh_A HN1;, notch 1, ankyrin 100.0 1.6E-38 5.4E-43 287.0 23.3 223 12-243 8-246 (253)
27 1s70_B 130 kDa myosin-binding 100.0 5.4E-39 1.9E-43 297.6 19.9 245 20-265 4-277 (299)
28 2f8y_A Notch homolog 1, transl 100.0 2.3E-38 7.8E-43 280.4 22.6 212 67-279 2-217 (223)
29 1k1a_A B-cell lymphoma 3-encod 100.0 2.2E-38 7.5E-43 283.9 20.8 226 13-244 8-240 (241)
30 3kea_A K1L; tropism, ANK repea 100.0 7.5E-39 2.6E-43 294.0 16.7 237 21-278 6-246 (285)
31 4b93_B Ankyrin repeat domain-c 100.0 8.4E-39 2.9E-43 290.4 16.5 232 13-246 10-245 (269)
32 1oy3_D Transcription factor in 100.0 3E-37 1E-41 283.3 23.4 233 83-318 2-254 (282)
33 3b7b_A Euchromatic histone-lys 100.0 3E-36 1E-40 269.3 27.7 222 81-305 2-226 (237)
34 2f8y_A Notch homolog 1, transl 100.0 4.5E-37 1.5E-41 272.0 21.6 214 25-247 2-218 (223)
35 2dzn_A Probable 26S proteasome 100.0 2E-36 7E-41 268.7 23.0 215 15-241 3-226 (228)
36 3kea_A K1L; tropism, ANK repea 100.0 6.3E-37 2.1E-41 281.2 19.0 236 66-315 9-247 (285)
37 3eu9_A Huntingtin-interacting 100.0 6.5E-36 2.2E-40 267.5 24.6 225 14-248 9-238 (240)
38 2rfa_A Transient receptor pote 100.0 1.6E-35 5.6E-40 263.7 21.9 208 55-281 2-225 (232)
39 1ikn_D Protein (I-kappa-B-alph 100.0 3.2E-37 1.1E-41 275.5 9.6 201 51-277 3-208 (236)
40 2rfa_A Transient receptor pote 100.0 3.3E-35 1.1E-39 261.7 20.9 207 89-317 2-225 (232)
41 3hra_A Ankyrin repeat family p 100.0 4E-34 1.4E-38 248.8 25.0 191 54-276 3-201 (201)
42 3hra_A Ankyrin repeat family p 100.0 5.8E-34 2E-38 247.7 24.7 188 122-312 4-201 (201)
43 1ikn_D Protein (I-kappa-B-alph 100.0 1.1E-35 3.7E-40 265.6 11.8 196 86-316 4-211 (236)
44 1s70_B 130 kDa myosin-binding 100.0 4.9E-34 1.7E-38 264.2 22.2 219 13-242 39-286 (299)
45 2pnn_A Transient receptor pote 100.0 1.1E-34 3.8E-39 264.9 15.2 216 50-283 7-263 (273)
46 2etb_A Transient receptor pote 100.0 4.6E-34 1.6E-38 258.3 16.4 204 55-278 1-246 (256)
47 1sw6_A Regulatory protein SWI6 100.0 7E-35 2.4E-39 272.9 11.2 231 25-264 58-327 (327)
48 2etb_A Transient receptor pote 100.0 2.4E-34 8E-39 260.2 13.5 203 89-314 1-246 (256)
49 2pnn_A Transient receptor pote 100.0 2.8E-34 9.5E-39 262.3 13.4 211 80-313 3-257 (273)
50 4gpm_A Engineered protein OR26 100.0 9E-33 3.1E-37 231.8 20.9 157 58-215 6-163 (169)
51 4gpm_A Engineered protein OR26 100.0 1.2E-32 4.1E-37 231.0 21.3 158 92-249 6-165 (169)
52 3jxi_A Vanilloid receptor-rela 100.0 3.7E-33 1.3E-37 252.9 10.3 207 53-278 2-250 (260)
53 3jxi_A Vanilloid receptor-rela 100.0 2E-32 7E-37 248.0 14.5 173 53-245 43-250 (260)
54 1sw6_A Regulatory protein SWI6 100.0 1E-33 3.5E-38 265.0 4.1 253 16-292 21-321 (327)
55 4hbd_A KN motif and ankyrin re 100.0 1.7E-31 5.9E-36 243.6 13.9 186 92-277 78-274 (276)
56 4hbd_A KN motif and ankyrin re 100.0 6.5E-31 2.2E-35 239.9 14.9 190 53-243 73-273 (276)
57 2rfm_A Putative ankyrin repeat 100.0 5.5E-30 1.9E-34 220.8 19.7 162 48-210 27-189 (192)
58 2rfm_A Putative ankyrin repeat 100.0 3.3E-30 1.1E-34 222.3 16.7 161 83-275 28-189 (192)
59 3v30_A DNA-binding protein rfx 100.0 5.5E-30 1.9E-34 216.7 16.1 169 56-256 2-171 (172)
60 3v31_A Ankyrin repeat family A 100.0 1.5E-29 5E-34 213.0 18.6 158 55-213 2-160 (167)
61 3v30_A DNA-binding protein rfx 100.0 9.8E-30 3.4E-34 215.2 17.4 142 49-191 29-171 (172)
62 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.5E-29 8.4E-34 212.0 19.5 156 89-276 13-169 (169)
63 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.4E-29 1.2E-33 211.1 20.3 160 51-211 9-169 (169)
64 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.3E-29 7.7E-34 210.7 17.7 156 55-212 4-161 (162)
65 3v31_A Ankyrin repeat family A 100.0 3.2E-29 1.1E-33 210.9 18.2 156 89-276 2-158 (167)
66 1awc_B Protein (GA binding pro 100.0 3.6E-29 1.2E-33 207.3 17.8 149 124-272 3-152 (153)
67 2aja_A Ankyrin repeat family p 100.0 1.4E-32 4.7E-37 259.7 -4.2 249 15-295 66-357 (376)
68 1ihb_A P18-INK4C(INK6), cyclin 100.0 4.8E-29 1.6E-33 208.7 17.7 154 90-276 5-160 (162)
69 3f6q_A Integrin-linked protein 100.0 7.2E-29 2.5E-33 211.3 16.8 163 54-216 3-166 (179)
70 3twr_A Tankyrase-2; ankyrin re 100.0 4.4E-29 1.5E-33 209.6 15.1 160 52-212 4-164 (165)
71 1awc_B Protein (GA binding pro 100.0 4.1E-28 1.4E-32 200.9 19.4 150 56-207 2-152 (153)
72 2vge_A RELA-associated inhibit 100.0 7.7E-32 2.6E-36 238.6 -3.6 181 89-272 20-207 (229)
73 3f6q_A Integrin-linked protein 100.0 2.8E-28 9.7E-33 207.6 17.6 164 89-252 4-170 (179)
74 2vge_A RELA-associated inhibit 100.0 8.1E-32 2.8E-36 238.4 -5.0 189 48-240 13-208 (229)
75 3twr_A Tankyrase-2; ankyrin re 100.0 1.6E-28 5.3E-33 206.3 14.3 157 120-277 5-164 (165)
76 1bd8_A P19INK4D CDK4/6 inhibit 100.0 7.8E-28 2.7E-32 200.0 18.4 152 56-209 2-154 (156)
77 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1E-27 3.5E-32 199.2 17.7 149 125-275 4-155 (156)
78 2aja_A Ankyrin repeat family p 100.0 8.6E-32 2.9E-36 254.3 -9.9 238 14-275 92-371 (376)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.3E-29 2.5E-33 221.5 6.8 185 89-276 4-202 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.4E-28 1.2E-32 217.1 7.2 203 54-260 3-225 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 1.1E-25 3.7E-30 182.3 13.4 131 81-212 3-135 (136)
82 1d9s_A Cyclin-dependent kinase 99.9 8.1E-26 2.8E-30 183.0 12.5 120 157-277 14-135 (136)
83 3t8k_A Uncharacterized protein 99.9 2.5E-26 8.4E-31 195.9 7.7 151 125-275 8-176 (186)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 1.1E-25 3.8E-30 186.8 11.2 143 50-194 6-150 (156)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 1.4E-25 4.8E-30 186.3 11.8 139 121-260 10-151 (156)
86 3t8k_A Uncharacterized protein 99.9 7.7E-26 2.6E-30 192.8 8.2 160 13-210 5-176 (186)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 1.4E-24 4.7E-29 175.8 14.7 120 157-276 16-136 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.6E-24 2.9E-28 168.5 17.4 124 55-179 1-125 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 4.8E-24 1.7E-28 172.5 15.0 126 52-178 10-136 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.5E-23 5.3E-28 167.0 16.9 125 89-213 1-126 (126)
91 3c5r_A BARD-1, BRCA1-associate 99.9 1.7E-24 5.9E-29 175.4 9.8 131 147-277 2-133 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1.8E-23 6.1E-28 169.5 9.4 122 52-174 6-128 (137)
93 3ui2_A Signal recognition part 99.9 3.9E-23 1.3E-27 184.7 10.9 140 89-245 44-185 (244)
94 3deo_A Signal recognition part 99.9 6.3E-23 2.1E-27 175.0 11.2 109 53-163 41-151 (183)
95 3deo_A Signal recognition part 99.9 1.3E-22 4.3E-27 173.1 13.0 139 87-242 41-181 (183)
96 3ui2_A Signal recognition part 99.9 1.4E-22 4.8E-27 181.1 13.3 144 53-215 42-187 (244)
97 3aaa_C Myotrophin, protein V-1 99.9 1.3E-22 4.6E-27 160.9 11.1 112 156-267 8-120 (123)
98 4gco_A Protein STI-1; structur 99.9 4.9E-22 1.7E-26 158.2 14.1 116 331-446 10-125 (126)
99 3ehr_A Osteoclast-stimulating 99.9 6.7E-23 2.3E-27 180.6 9.3 138 49-187 66-205 (222)
100 1dcq_A PYK2-associated protein 99.9 1E-21 3.5E-26 178.6 16.4 197 80-280 51-265 (278)
101 2b0o_E UPLC1; arfgap, structur 99.9 1.3E-21 4.5E-26 179.9 16.8 137 123-265 151-298 (301)
102 3aaa_C Myotrophin, protein V-1 99.9 3.2E-22 1.1E-26 158.8 10.8 110 53-163 4-114 (123)
103 2b0o_E UPLC1; arfgap, structur 99.9 5.7E-22 2E-26 182.3 11.9 143 86-233 147-299 (301)
104 3ehr_A Osteoclast-stimulating 99.9 7E-22 2.4E-26 174.1 9.6 121 157-277 75-197 (222)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.9 6.8E-21 2.3E-25 142.9 12.9 93 55-148 1-93 (93)
106 1dcq_A PYK2-associated protein 99.8 2.4E-20 8.1E-25 169.6 16.2 133 12-149 128-264 (278)
107 3jue_A Arfgap with coiled-coil 99.8 1.1E-20 3.7E-25 177.7 13.7 122 157-278 201-326 (368)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.2E-20 4.2E-25 141.4 11.4 91 187-277 1-92 (93)
109 3jue_A Arfgap with coiled-coil 99.8 1.3E-20 4.5E-25 177.1 14.2 120 57-177 200-323 (368)
110 3rkv_A Putative peptidylprolyl 99.8 4.7E-20 1.6E-24 153.8 14.0 131 328-458 5-154 (162)
111 3lvq_E ARF-GAP with SH3 domain 99.8 7.9E-20 2.7E-24 180.4 15.6 124 92-215 134-267 (497)
112 3lvq_E ARF-GAP with SH3 domain 99.8 1E-19 3.5E-24 179.6 15.8 134 57-197 133-276 (497)
113 2hr2_A Hypothetical protein; a 99.8 2.3E-20 7.8E-25 150.9 8.5 122 331-452 8-152 (159)
114 2l6b_A NR1C; ankyrin, consensu 99.8 6.5E-20 2.2E-24 143.5 7.5 104 51-155 4-107 (115)
115 3upv_A Heat shock protein STI1 99.8 1.6E-18 5.4E-23 137.9 14.4 118 332-449 2-125 (126)
116 3gyz_A Chaperone protein IPGC; 99.8 1.4E-18 4.9E-23 142.1 14.1 108 329-436 31-138 (151)
117 2l6b_A NR1C; ankyrin, consensu 99.8 2.5E-19 8.5E-24 140.1 8.4 107 85-191 4-111 (115)
118 4gcn_A Protein STI-1; structur 99.8 2.4E-18 8.3E-23 136.9 12.8 115 329-444 3-124 (127)
119 4ga2_A E3 SUMO-protein ligase 99.8 1.6E-18 5.6E-23 142.3 11.6 121 331-451 28-149 (150)
120 3sz7_A HSC70 cochaperone (SGT) 99.8 4.6E-18 1.6E-22 142.0 13.2 124 331-454 8-133 (164)
121 2zgd_A 3 repeat synthetic anky 99.8 5.3E-18 1.8E-22 131.2 11.2 98 44-142 12-109 (110)
122 2vgx_A Chaperone SYCD; alterna 99.8 1.4E-17 4.9E-22 136.3 14.3 121 331-451 18-138 (148)
123 2xcb_A PCRH, regulatory protei 99.7 9.2E-18 3.2E-22 136.5 12.2 124 330-453 14-137 (142)
124 2fbn_A 70 kDa peptidylprolyl i 99.7 6E-17 2.1E-21 139.6 17.1 132 326-457 30-177 (198)
125 2zgd_A 3 repeat synthetic anky 99.7 7.3E-18 2.5E-22 130.5 10.1 91 182-272 18-109 (110)
126 4ga2_A E3 SUMO-protein ligase 99.7 4.8E-18 1.6E-22 139.5 9.2 115 340-454 3-117 (150)
127 2pl2_A Hypothetical conserved 99.7 4.7E-17 1.6E-21 142.5 13.7 122 334-455 5-137 (217)
128 1p5q_A FKBP52, FK506-binding p 99.7 6.6E-17 2.3E-21 151.4 15.2 132 324-455 137-283 (336)
129 3urz_A Uncharacterized protein 99.7 7.2E-17 2.5E-21 140.3 14.4 119 333-451 3-137 (208)
130 4gyw_A UDP-N-acetylglucosamine 99.7 8.2E-17 2.8E-21 164.5 14.8 124 332-455 7-130 (723)
131 3q49_B STIP1 homology and U bo 99.7 1.6E-16 5.4E-21 128.0 13.3 124 333-456 8-136 (137)
132 1hxi_A PEX5, peroxisome target 99.7 1.4E-16 4.9E-21 125.4 12.7 103 335-437 18-120 (121)
133 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 1.2E-16 3.9E-21 156.1 13.9 133 324-456 258-405 (457)
134 2vyi_A SGTA protein; chaperone 99.7 7.1E-16 2.4E-20 122.5 15.8 125 328-452 6-130 (131)
135 1ihg_A Cyclophilin 40; ppiase 99.7 1.7E-16 5.8E-21 150.2 13.4 131 326-456 215-361 (370)
136 2lni_A Stress-induced-phosphop 99.7 3.1E-16 1.1E-20 125.2 12.5 119 332-450 14-132 (133)
137 1elw_A TPR1-domain of HOP; HOP 99.7 1.3E-15 4.3E-20 118.7 15.2 115 333-447 3-117 (118)
138 4gyw_A UDP-N-acetylglucosamine 99.7 4E-16 1.4E-20 159.4 14.8 122 334-455 43-164 (723)
139 1a17_A Serine/threonine protei 99.7 2.5E-15 8.4E-20 125.0 16.3 127 328-454 7-135 (166)
140 1zu2_A Mitochondrial import re 99.7 3.9E-16 1.3E-20 125.8 10.8 103 346-448 14-137 (158)
141 2pl2_A Hypothetical conserved 99.7 6.4E-16 2.2E-20 135.2 13.1 121 334-455 73-204 (217)
142 2h6f_A Protein farnesyltransfe 99.7 5.9E-16 2E-20 146.8 13.0 124 331-454 94-218 (382)
143 3gyz_A Chaperone protein IPGC; 99.7 1.2E-16 4E-21 130.7 7.0 103 353-455 21-123 (151)
144 4i17_A Hypothetical protein; T 99.6 1.5E-15 5.3E-20 133.8 13.8 122 334-455 7-136 (228)
145 3vtx_A MAMA; tetratricopeptide 99.6 2.4E-15 8.2E-20 127.7 14.0 123 333-455 4-160 (184)
146 2if4_A ATFKBP42; FKBP-like, al 99.6 5.9E-16 2E-20 144.9 10.8 129 324-452 169-314 (338)
147 2dba_A Smooth muscle cell asso 99.6 4E-15 1.4E-19 121.1 14.1 116 332-447 26-144 (148)
148 2xev_A YBGF; tetratricopeptide 99.6 3.5E-15 1.2E-19 118.7 13.3 117 335-451 3-125 (129)
149 1elr_A TPR2A-domain of HOP; HO 99.6 5.8E-15 2E-19 117.2 13.7 121 332-453 2-129 (131)
150 2h6f_A Protein farnesyltransfe 99.6 1.7E-15 5.6E-20 143.7 11.9 118 333-450 130-248 (382)
151 1na0_A Designed protein CTPR3; 99.6 1.9E-14 6.4E-19 113.1 15.4 117 333-449 8-124 (125)
152 3k9i_A BH0479 protein; putativ 99.6 2E-15 6.9E-20 118.0 8.0 108 346-453 2-112 (117)
153 3vtx_A MAMA; tetratricopeptide 99.6 1.9E-14 6.6E-19 122.1 14.6 104 334-437 73-176 (184)
154 1wao_1 Serine/threonine protei 99.6 3.1E-15 1.1E-19 146.6 10.7 125 332-456 4-130 (477)
155 4i17_A Hypothetical protein; T 99.6 2.2E-14 7.6E-19 126.3 15.2 118 335-452 43-169 (228)
156 4gco_A Protein STI-1; structur 99.6 6E-15 2E-19 116.9 9.6 98 358-455 3-100 (126)
157 3urz_A Uncharacterized protein 99.6 9.6E-14 3.3E-18 120.4 16.8 109 337-446 57-200 (208)
158 1hh8_A P67PHOX, NCF-2, neutrop 99.6 5.6E-14 1.9E-18 122.1 14.2 121 332-455 4-140 (213)
159 2vgx_A Chaperone SYCD; alterna 99.5 7.1E-15 2.4E-19 120.1 7.5 101 355-455 8-108 (148)
160 2c2l_A CHIP, carboxy terminus 99.5 3.1E-14 1.1E-18 129.7 11.9 102 334-435 4-105 (281)
161 3qky_A Outer membrane assembly 99.5 6.6E-14 2.3E-18 126.0 13.6 123 333-455 14-167 (261)
162 2fo7_A Synthetic consensus TPR 99.5 1.1E-13 3.7E-18 110.2 12.8 121 335-455 2-122 (136)
163 2pzi_A Probable serine/threoni 99.5 2.5E-14 8.6E-19 146.6 9.3 120 335-455 434-553 (681)
164 2vsy_A XCC0866; transferase, g 99.5 1.1E-13 3.7E-18 139.3 13.7 124 331-454 20-146 (568)
165 3as5_A MAMA; tetratricopeptide 99.5 2.7E-13 9.4E-18 114.4 14.0 121 334-454 42-162 (186)
166 2kck_A TPR repeat; tetratricop 99.5 7.2E-14 2.5E-18 107.5 9.5 101 336-436 8-111 (112)
167 3as5_A MAMA; tetratricopeptide 99.5 3.4E-13 1.2E-17 113.8 14.5 123 332-454 6-128 (186)
168 2e2e_A Formate-dependent nitri 99.5 2.8E-13 9.7E-18 114.1 13.6 112 334-445 44-158 (177)
169 2xcb_A PCRH, regulatory protei 99.5 5.7E-14 1.9E-18 113.9 8.7 101 355-455 5-105 (142)
170 2r5s_A Uncharacterized protein 99.5 1E-13 3.4E-18 116.9 10.6 128 327-455 33-163 (176)
171 4abn_A Tetratricopeptide repea 99.5 9.2E-14 3.2E-18 136.3 11.8 120 335-454 171-310 (474)
172 4abn_A Tetratricopeptide repea 99.5 1.2E-13 4.2E-18 135.4 12.5 122 333-455 101-240 (474)
173 3qou_A Protein YBBN; thioredox 99.5 2.1E-13 7.3E-18 124.5 12.9 122 333-454 116-273 (287)
174 3uq3_A Heat shock protein STI1 99.5 3.6E-13 1.2E-17 120.2 13.9 123 333-455 78-226 (258)
175 2e2e_A Formate-dependent nitri 99.5 2.4E-14 8.1E-19 120.8 5.4 119 337-455 13-134 (177)
176 2yhc_A BAMD, UPF0169 lipoprote 99.5 4.8E-13 1.6E-17 117.5 13.9 106 334-439 4-133 (225)
177 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.5E-13 2.6E-17 119.6 15.3 115 331-445 40-154 (275)
178 2kat_A Uncharacterized protein 99.5 3.9E-13 1.3E-17 104.5 11.4 103 352-454 3-107 (115)
179 1fch_A Peroxisomal targeting s 99.5 4E-13 1.4E-17 127.0 13.8 122 334-455 217-349 (368)
180 2pzi_A Probable serine/threoni 99.5 1.2E-13 4.1E-18 141.6 10.3 117 333-450 466-582 (681)
181 3u4t_A TPR repeat-containing p 99.5 2.4E-13 8.2E-18 122.8 11.0 116 337-453 6-125 (272)
182 2q7f_A YRRB protein; TPR, prot 99.5 6.9E-13 2.4E-17 117.4 13.9 122 334-455 91-212 (243)
183 2vq2_A PILW, putative fimbrial 99.5 9.9E-13 3.4E-17 114.8 14.6 121 333-453 7-130 (225)
184 2l6j_A TPR repeat-containing p 99.5 6.6E-14 2.3E-18 107.9 6.2 96 333-428 3-104 (111)
185 2q7f_A YRRB protein; TPR, prot 99.5 9.6E-13 3.3E-17 116.5 14.5 122 334-455 57-178 (243)
186 3uq3_A Heat shock protein STI1 99.5 6.3E-13 2.2E-17 118.7 13.4 114 332-445 137-256 (258)
187 2ho1_A Type 4 fimbrial biogene 99.4 8.2E-13 2.8E-17 117.8 13.6 119 335-453 72-192 (252)
188 1w3b_A UDP-N-acetylglucosamine 99.4 8E-13 2.7E-17 126.1 14.3 120 335-454 238-357 (388)
189 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.4E-12 4.7E-17 113.3 14.6 104 334-437 37-156 (213)
190 3ieg_A DNAJ homolog subfamily 99.4 9.1E-13 3.1E-17 123.7 14.3 111 333-443 2-115 (359)
191 3qky_A Outer membrane assembly 99.4 7.1E-13 2.4E-17 119.2 12.6 117 334-450 52-199 (261)
192 4eqf_A PEX5-related protein; a 99.4 4.6E-13 1.6E-17 126.7 11.8 122 334-455 177-300 (365)
193 1w3b_A UDP-N-acetylglucosamine 99.4 1E-12 3.5E-17 125.3 13.8 120 335-454 204-323 (388)
194 4eqf_A PEX5-related protein; a 99.4 7.3E-13 2.5E-17 125.2 12.6 121 334-454 213-345 (365)
195 2yhc_A BAMD, UPF0169 lipoprote 99.4 9.1E-13 3.1E-17 115.8 12.1 122 334-455 41-203 (225)
196 2ho1_A Type 4 fimbrial biogene 99.4 1.3E-12 4.6E-17 116.4 13.2 123 333-455 104-228 (252)
197 3ieg_A DNAJ homolog subfamily 99.4 4E-12 1.4E-16 119.2 16.7 121 333-453 233-357 (359)
198 2vq2_A PILW, putative fimbrial 99.4 2.1E-12 7.2E-17 112.7 13.7 118 336-453 44-164 (225)
199 3u4t_A TPR repeat-containing p 99.4 1.4E-12 4.8E-17 117.7 12.7 119 333-451 73-191 (272)
200 3cv0_A Peroxisome targeting si 99.4 2E-12 6.7E-17 119.8 13.5 122 334-455 172-305 (327)
201 3hym_B Cell division cycle pro 99.4 2.7E-12 9.4E-17 119.0 14.4 121 335-455 91-212 (330)
202 2y4t_A DNAJ homolog subfamily 99.4 2.7E-12 9.2E-17 124.8 14.9 123 323-445 15-140 (450)
203 3hym_B Cell division cycle pro 99.4 1.3E-12 4.4E-17 121.2 11.0 119 336-454 24-143 (330)
204 3mkr_A Coatomer subunit epsilo 99.4 3.9E-12 1.3E-16 116.3 13.7 118 335-452 131-250 (291)
205 3upv_A Heat shock protein STI1 99.4 1.9E-12 6.6E-17 102.3 10.1 91 365-455 1-91 (126)
206 2y4t_A DNAJ homolog subfamily 99.4 1.5E-11 5.1E-16 119.5 16.7 121 333-453 256-380 (450)
207 2kc7_A BFR218_protein; tetratr 99.3 2.3E-12 7.8E-17 97.0 8.2 91 338-436 4-95 (99)
208 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.5E-12 5E-17 117.6 8.5 115 341-455 12-130 (275)
209 2l6j_A TPR repeat-containing p 99.3 1.2E-11 4.1E-16 95.0 12.0 89 367-455 3-97 (111)
210 1hxi_A PEX5, peroxisome target 99.3 6.7E-12 2.3E-16 98.4 10.6 87 369-455 18-104 (121)
211 1fch_A Peroxisomal targeting s 99.3 8.3E-12 2.8E-16 117.8 12.8 116 339-455 187-304 (368)
212 1qqe_A Vesicular transport pro 99.3 4.5E-12 1.5E-16 116.0 10.6 124 332-455 75-218 (292)
213 4gcn_A Protein STI-1; structur 99.3 2E-12 7E-17 102.4 7.2 89 366-454 6-101 (127)
214 3ma5_A Tetratricopeptide repea 99.3 7.6E-12 2.6E-16 94.4 10.1 90 363-452 2-93 (100)
215 2hr2_A Hypothetical protein; a 99.3 4.6E-12 1.6E-16 102.3 9.3 88 368-455 11-121 (159)
216 2fo7_A Synthetic consensus TPR 99.3 1.7E-11 5.7E-16 97.2 12.6 101 335-435 36-136 (136)
217 1na3_A Designed protein CTPR2; 99.3 1.3E-11 4.4E-16 91.0 10.8 82 367-448 8-89 (91)
218 2gw1_A Mitochondrial precursor 99.3 1.4E-11 4.7E-16 121.8 14.3 107 330-437 2-108 (514)
219 2vsy_A XCC0866; transferase, g 99.3 4.6E-12 1.6E-16 127.4 10.3 109 347-455 2-110 (568)
220 1na3_A Designed protein CTPR2; 99.3 2.3E-11 7.7E-16 89.7 11.5 85 332-416 7-91 (91)
221 2kck_A TPR repeat; tetratricop 99.3 8.9E-12 3E-16 95.6 9.1 93 363-455 1-96 (112)
222 3sz7_A HSC70 cochaperone (SGT) 99.3 1.1E-11 3.6E-16 103.0 10.2 93 363-455 6-98 (164)
223 3fp2_A TPR repeat-containing p 99.3 1.1E-11 3.9E-16 123.2 11.9 121 335-455 277-397 (537)
224 3edt_B KLC 2, kinesin light ch 99.3 7.7E-12 2.6E-16 113.1 9.6 124 332-455 41-188 (283)
225 3q49_B STIP1 homology and U bo 99.3 2.1E-11 7.2E-16 97.5 10.7 94 362-455 3-96 (137)
226 4g1t_A Interferon-induced prot 99.3 4.7E-11 1.6E-15 116.9 15.3 122 334-455 51-191 (472)
227 3cv0_A Peroxisome targeting si 99.3 1.6E-11 5.4E-16 113.7 11.2 113 343-455 147-259 (327)
228 3fp2_A TPR repeat-containing p 99.3 2.7E-11 9.4E-16 120.5 12.9 127 328-455 237-363 (537)
229 1p5q_A FKBP52, FK506-binding p 99.2 7.3E-11 2.5E-15 110.2 14.0 100 331-430 193-293 (336)
230 2xpi_A Anaphase-promoting comp 99.2 6.2E-11 2.1E-15 119.6 14.3 122 334-455 373-494 (597)
231 2ond_A Cleavage stimulation fa 99.2 4.4E-11 1.5E-15 110.3 11.9 119 335-453 100-220 (308)
232 1qqe_A Vesicular transport pro 99.2 8.7E-11 3E-15 107.4 13.2 107 332-438 115-235 (292)
233 3mkr_A Coatomer subunit epsilo 99.2 8E-11 2.7E-15 107.5 12.8 118 334-456 101-220 (291)
234 3edt_B KLC 2, kinesin light ch 99.2 3.2E-11 1.1E-15 109.0 9.7 124 332-455 83-271 (283)
235 2xpi_A Anaphase-promoting comp 99.2 9.8E-11 3.4E-15 118.2 13.8 120 335-454 442-568 (597)
236 2gw1_A Mitochondrial precursor 99.2 5.5E-11 1.9E-15 117.5 10.9 119 336-454 340-467 (514)
237 1a17_A Serine/threonine protei 99.2 2.2E-10 7.4E-15 94.7 12.8 97 334-430 47-145 (166)
238 2qfc_A PLCR protein; TPR, HTH, 99.2 2.2E-10 7.5E-15 104.8 13.6 125 331-455 112-255 (293)
239 1ouv_A Conserved hypothetical 99.2 2.5E-10 8.6E-15 103.1 13.6 109 334-448 6-122 (273)
240 3ro3_A PINS homolog, G-protein 99.2 6.1E-11 2.1E-15 97.3 8.6 125 331-455 6-148 (164)
241 3ulq_A Response regulator aspa 99.2 7.2E-11 2.4E-15 112.4 10.2 125 331-455 140-283 (383)
242 4a1s_A PINS, partner of inscut 99.2 6.2E-11 2.1E-15 113.7 9.8 121 331-451 45-181 (411)
243 1pc2_A Mitochondria fission pr 99.2 1.7E-10 5.7E-15 91.8 10.3 104 348-451 12-120 (152)
244 2ond_A Cleavage stimulation fa 99.2 3.6E-10 1.2E-14 104.1 13.6 113 334-446 50-178 (308)
245 1wao_1 Serine/threonine protei 99.1 8.9E-11 3.1E-15 114.9 9.8 102 334-435 40-154 (477)
246 2lni_A Stress-induced-phosphop 99.1 1.6E-10 5.5E-15 91.5 9.0 92 364-455 12-103 (133)
247 3nf1_A KLC 1, kinesin light ch 99.1 9.8E-11 3.4E-15 107.4 8.9 124 332-455 67-214 (311)
248 3nf1_A KLC 1, kinesin light ch 99.1 8.2E-11 2.8E-15 108.0 7.9 128 328-455 21-172 (311)
249 2fbn_A 70 kDa peptidylprolyl i 99.1 3.8E-11 1.3E-15 103.0 4.9 112 344-455 14-141 (198)
250 3rkv_A Putative peptidylprolyl 99.1 1.6E-10 5.5E-15 95.5 8.4 89 367-455 10-116 (162)
251 3u3w_A Transcriptional activat 99.1 2E-10 6.9E-15 105.0 9.9 119 333-451 114-251 (293)
252 1dce_A Protein (RAB geranylger 99.1 8.1E-10 2.8E-14 110.1 15.0 118 333-450 62-192 (567)
253 1elw_A TPR1-domain of HOP; HOP 99.1 4.8E-10 1.6E-14 86.5 10.4 89 367-455 3-91 (118)
254 3dra_A Protein farnesyltransfe 99.1 8.4E-10 2.9E-14 100.6 13.5 119 335-453 104-237 (306)
255 2c2l_A CHIP, carboxy terminus 99.1 3.9E-10 1.3E-14 102.4 11.3 91 365-455 1-91 (281)
256 2xev_A YBGF; tetratricopeptide 99.1 3.2E-10 1.1E-14 89.5 9.4 88 368-455 2-95 (129)
257 2kc7_A BFR218_protein; tetratr 99.1 5.6E-10 1.9E-14 83.7 10.1 79 371-449 3-84 (99)
258 2dba_A Smooth muscle cell asso 99.1 3.2E-10 1.1E-14 91.6 9.4 95 361-455 21-118 (148)
259 1zu2_A Mitochondrial import re 99.1 1.6E-10 5.3E-15 93.1 7.0 71 332-402 34-125 (158)
260 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 6.3E-10 2.2E-14 108.4 12.8 98 332-429 315-413 (457)
261 3k9i_A BH0479 protein; putativ 99.1 4.3E-10 1.5E-14 87.3 9.3 76 331-406 24-99 (117)
262 3gw4_A Uncharacterized protein 99.1 1.9E-10 6.4E-15 98.6 7.7 123 333-455 25-166 (203)
263 2vyi_A SGTA protein; chaperone 99.1 3.8E-10 1.3E-14 88.8 8.8 94 362-455 6-99 (131)
264 2qfc_A PLCR protein; TPR, HTH, 99.1 2.3E-09 7.8E-14 97.9 15.3 125 331-455 72-215 (293)
265 1dce_A Protein (RAB geranylger 99.1 1.7E-09 5.9E-14 107.7 15.4 116 335-450 29-157 (567)
266 3ro2_A PINS homolog, G-protein 99.1 3.4E-10 1.2E-14 104.7 9.7 119 333-451 4-138 (338)
267 3rjv_A Putative SEL1 repeat pr 99.1 4.7E-10 1.6E-14 97.3 9.9 110 334-448 18-137 (212)
268 3ulq_A Response regulator aspa 99.1 2.3E-10 7.9E-15 108.9 8.2 120 336-455 105-243 (383)
269 1na0_A Designed protein CTPR3; 99.1 1.1E-09 3.6E-14 85.4 10.5 92 364-455 4-96 (125)
270 4f3v_A ESX-1 secretion system 99.1 1.1E-09 3.6E-14 97.7 11.5 107 336-443 137-248 (282)
271 2if4_A ATFKBP42; FKBP-like, al 99.1 1.2E-10 4.2E-15 108.7 5.8 103 335-437 231-334 (338)
272 4f3v_A ESX-1 secretion system 99.1 5E-10 1.7E-14 99.8 9.4 122 333-455 101-227 (282)
273 1ouv_A Conserved hypothetical 99.0 1.9E-09 6.5E-14 97.2 13.4 108 335-448 75-194 (273)
274 2r5s_A Uncharacterized protein 99.0 1.2E-09 4E-14 91.7 11.1 83 348-430 88-172 (176)
275 2ifu_A Gamma-SNAP; membrane fu 99.0 2.1E-10 7.1E-15 105.7 7.1 104 333-438 115-230 (307)
276 3sf4_A G-protein-signaling mod 99.0 3.7E-10 1.3E-14 107.8 8.9 119 333-451 8-142 (406)
277 3q15_A PSP28, response regulat 99.0 4.9E-10 1.7E-14 106.4 9.5 125 331-455 138-280 (378)
278 1ihg_A Cyclophilin 40; ppiase 99.0 2.1E-09 7E-14 101.5 13.6 96 329-424 268-363 (370)
279 3ma5_A Tetratricopeptide repea 99.0 1.3E-09 4.6E-14 81.9 9.5 84 333-416 6-91 (100)
280 3sf4_A G-protein-signaling mod 99.0 4.9E-10 1.7E-14 106.9 8.7 124 332-455 185-326 (406)
281 1elr_A TPR2A-domain of HOP; HO 99.0 6.6E-10 2.3E-14 87.5 8.0 91 365-455 1-98 (131)
282 3rjv_A Putative SEL1 repeat pr 99.0 1.3E-09 4.5E-14 94.4 10.0 109 335-447 51-173 (212)
283 3dra_A Protein farnesyltransfe 99.0 3.2E-09 1.1E-13 96.7 12.9 118 334-451 67-195 (306)
284 4g1t_A Interferon-induced prot 99.0 1.6E-09 5.4E-14 105.9 11.7 111 336-446 96-219 (472)
285 3dss_A Geranylgeranyl transfer 99.0 6.9E-09 2.4E-13 95.1 15.1 116 334-449 108-240 (331)
286 4a1s_A PINS, partner of inscut 99.0 4.6E-10 1.6E-14 107.6 6.8 125 331-455 220-362 (411)
287 2ifu_A Gamma-SNAP; membrane fu 99.0 1.1E-09 3.7E-14 100.9 8.9 123 331-454 73-213 (307)
288 3n71_A Histone lysine methyltr 99.0 2.1E-09 7.1E-14 104.6 10.9 128 329-456 304-455 (490)
289 3q7a_A Farnesyltransferase alp 99.0 1.2E-08 4.2E-13 93.9 15.2 110 344-453 64-176 (349)
290 3bee_A Putative YFRE protein; 99.0 6.2E-09 2.1E-13 76.6 10.8 74 364-437 2-78 (93)
291 3u3w_A Transcriptional activat 99.0 4E-09 1.4E-13 96.3 12.0 124 332-455 73-215 (293)
292 3ro2_A PINS homolog, G-protein 98.9 1.2E-09 4.2E-14 100.9 8.2 124 332-455 181-322 (338)
293 3q7a_A Farnesyltransferase alp 98.9 4.2E-09 1.4E-13 97.0 11.4 119 334-452 123-258 (349)
294 3dss_A Geranylgeranyl transfer 98.9 1.3E-08 4.4E-13 93.3 14.5 116 334-449 64-192 (331)
295 3q15_A PSP28, response regulat 98.9 2.7E-09 9.3E-14 101.3 9.9 102 332-433 180-292 (378)
296 3qou_A Protein YBBN; thioredox 98.9 3.8E-09 1.3E-13 96.2 9.4 96 335-430 186-283 (287)
297 2kat_A Uncharacterized protein 98.9 1.1E-08 3.6E-13 79.0 10.5 86 334-419 19-106 (115)
298 2v5f_A Prolyl 4-hydroxylase su 98.9 1.6E-08 5.6E-13 76.4 11.2 76 334-409 5-87 (104)
299 3ro3_A PINS homolog, G-protein 98.9 5.2E-09 1.8E-13 85.5 9.1 102 332-433 47-160 (164)
300 2v5f_A Prolyl 4-hydroxylase su 98.9 2.4E-08 8.1E-13 75.5 11.1 86 367-452 4-96 (104)
301 2ooe_A Cleavage stimulation fa 98.8 1.2E-08 4.2E-13 101.4 10.8 120 334-453 321-442 (530)
302 3gw4_A Uncharacterized protein 98.8 9.6E-09 3.3E-13 87.8 8.3 112 344-455 2-126 (203)
303 3qww_A SET and MYND domain-con 98.8 3.5E-08 1.2E-12 94.5 12.2 111 332-442 296-427 (433)
304 2ooe_A Cleavage stimulation fa 98.8 7E-08 2.4E-12 95.9 14.1 112 334-445 272-399 (530)
305 1hz4_A MALT regulatory protein 98.8 2.6E-08 8.9E-13 94.1 10.5 123 332-454 51-192 (373)
306 3qwp_A SET and MYND domain-con 98.7 1.1E-07 3.9E-12 91.1 14.3 119 331-449 284-426 (429)
307 1nzn_A CGI-135 protein, fissio 98.7 7.7E-08 2.6E-12 73.6 10.3 106 346-451 13-123 (126)
308 1klx_A Cysteine rich protein B 98.7 7.6E-08 2.6E-12 76.9 10.8 98 340-443 31-136 (138)
309 1hz4_A MALT regulatory protein 98.7 5.5E-08 1.9E-12 91.9 11.2 126 330-455 10-154 (373)
310 3ly7_A Transcriptional activat 98.7 1.6E-07 5.5E-12 86.3 13.0 105 334-439 196-347 (372)
311 1klx_A Cysteine rich protein B 98.6 1.6E-07 5.3E-12 75.1 9.4 94 347-448 8-105 (138)
312 3e4b_A ALGK; tetratricopeptide 98.6 2.5E-07 8.7E-12 89.8 12.0 91 348-447 231-329 (452)
313 3u64_A Protein TP_0956; tetrat 98.6 2.3E-07 8E-12 81.7 10.3 86 349-434 178-272 (301)
314 3mv2_B Coatomer subunit epsilo 98.6 5.2E-07 1.8E-11 81.4 12.0 119 337-456 103-231 (310)
315 3e4b_A ALGK; tetratricopeptide 98.5 6.4E-07 2.2E-11 87.0 13.3 108 333-448 247-366 (452)
316 2xm6_A Protein corresponding t 98.5 6.8E-07 2.3E-11 87.8 13.4 109 334-448 75-195 (490)
317 2xm6_A Protein corresponding t 98.5 1E-06 3.4E-11 86.6 13.4 109 334-448 111-231 (490)
318 3bee_A Putative YFRE protein; 98.5 3.9E-07 1.3E-11 66.9 7.8 70 334-403 6-78 (93)
319 1pc2_A Mitochondria fission pr 98.5 7.7E-07 2.6E-11 70.7 9.4 81 334-414 32-117 (152)
320 3n71_A Histone lysine methyltr 98.3 1.4E-06 4.6E-11 84.9 9.5 101 330-430 347-463 (490)
321 1b89_A Protein (clathrin heavy 98.3 1.5E-06 5.2E-11 82.0 9.4 104 336-449 124-254 (449)
322 3o48_A Mitochondria fission 1 98.3 7.3E-06 2.5E-10 62.7 11.3 98 353-451 26-127 (134)
323 4b4t_Q 26S proteasome regulato 98.3 5.8E-06 2E-10 79.5 13.7 127 327-453 48-192 (434)
324 1y8m_A FIS1; mitochondria, unk 98.3 9.5E-06 3.2E-10 62.9 11.6 87 365-451 36-126 (144)
325 1xi4_A Clathrin heavy chain; a 98.3 5.1E-06 1.7E-10 88.1 12.1 107 335-449 1196-1327(1630)
326 1xi4_A Clathrin heavy chain; a 98.2 4.7E-06 1.6E-10 88.3 10.5 107 341-453 1056-1184(1630)
327 3ffl_A Anaphase-promoting comp 98.2 1.1E-05 3.6E-10 64.5 10.0 110 336-446 22-165 (167)
328 3mv2_B Coatomer subunit epsilo 98.2 1.3E-05 4.3E-10 72.4 11.5 116 333-451 135-270 (310)
329 4b4t_Q 26S proteasome regulato 98.2 2E-06 6.8E-11 82.7 6.8 120 336-455 6-154 (434)
330 1b89_A Protein (clathrin heavy 97.9 2.3E-05 7.9E-10 74.0 7.1 120 334-453 148-299 (449)
331 3u64_A Protein TP_0956; tetrat 97.8 6.5E-05 2.2E-09 66.2 9.1 118 331-448 103-251 (301)
332 1nzn_A CGI-135 protein, fissio 97.8 0.00017 5.7E-09 55.1 9.8 79 334-412 35-118 (126)
333 3qwp_A SET and MYND domain-con 97.7 0.00014 4.8E-09 69.6 9.9 85 330-414 325-425 (429)
334 3qww_A SET and MYND domain-con 97.6 0.00011 3.6E-09 70.3 8.0 75 330-404 336-423 (433)
335 3ly7_A Transcriptional activat 97.6 0.00011 3.9E-09 67.5 7.5 73 334-407 277-349 (372)
336 3o48_A Mitochondria fission 1 97.6 0.0006 2.1E-08 52.2 9.9 81 334-414 40-124 (134)
337 1y8m_A FIS1; mitochondria, unk 97.5 0.0013 4.5E-08 51.0 10.5 79 334-412 39-121 (144)
338 4e6h_A MRNA 3'-END-processing 97.2 0.0018 6.2E-08 65.5 11.0 95 337-431 346-463 (679)
339 2ff4_A Probable regulatory pro 97.2 0.0056 1.9E-07 57.6 13.6 103 328-430 109-233 (388)
340 4h7y_A Dual specificity protei 97.1 0.0067 2.3E-07 47.4 10.8 105 334-439 13-131 (161)
341 4e6h_A MRNA 3'-END-processing 97.1 0.0045 1.5E-07 62.6 12.6 119 334-452 434-557 (679)
342 3ffl_A Anaphase-promoting comp 96.7 0.006 2.1E-07 48.7 8.1 81 331-412 60-165 (167)
343 2uy1_A Cleavage stimulation fa 96.7 0.02 6.9E-07 55.7 13.3 116 334-451 213-369 (493)
344 1ya0_A SMG-7 transcript varian 96.1 0.038 1.3E-06 53.3 11.3 78 336-413 154-231 (497)
345 4gns_B Protein CSD3, chitin bi 95.7 0.027 9.3E-07 57.1 8.3 59 370-428 339-397 (754)
346 2uy1_A Cleavage stimulation fa 95.3 0.24 8.3E-06 48.1 13.7 111 335-450 287-398 (493)
347 1zbp_A Hypothetical protein VP 95.0 0.2 7E-06 43.4 10.7 63 341-403 4-66 (273)
348 4h7y_A Dual specificity protei 95.0 0.081 2.8E-06 41.4 7.3 91 362-453 7-111 (161)
349 4gns_B Protein CSD3, chitin bi 94.9 0.06 2.1E-06 54.6 8.1 62 333-394 336-397 (754)
350 4g26_A Pentatricopeptide repea 94.8 0.35 1.2E-05 47.0 13.2 103 336-438 107-213 (501)
351 3kae_A CDC27, possible protein 94.7 0.84 2.9E-05 36.4 12.2 94 339-437 38-149 (242)
352 1ya0_A SMG-7 transcript varian 94.5 0.17 5.9E-06 48.8 9.9 81 369-449 153-233 (497)
353 4g26_A Pentatricopeptide repea 94.3 0.44 1.5E-05 46.3 12.4 107 347-454 83-193 (501)
354 3txn_A 26S proteasome regulato 93.8 0.23 7.9E-06 46.3 8.9 93 339-431 104-210 (394)
355 1zbp_A Hypothetical protein VP 93.4 0.4 1.4E-05 41.6 9.0 66 377-442 6-71 (273)
356 2ff4_A Probable regulatory pro 93.0 0.36 1.2E-05 45.1 9.0 65 332-396 169-233 (388)
357 4b4t_R RPN7, 26S proteasome re 92.8 0.41 1.4E-05 45.5 9.1 96 337-432 134-238 (429)
358 4b4t_P 26S proteasome regulato 91.8 1.9 6.5E-05 41.1 12.5 100 332-431 135-247 (445)
359 3mkq_A Coatomer beta'-subunit; 88.8 1.4 4.9E-05 45.3 9.6 83 341-428 659-762 (814)
360 3spa_A Mtrpol, DNA-directed RN 87.0 8.9 0.0003 40.3 13.5 120 332-452 125-258 (1134)
361 2w2u_A Hypothetical P60 katani 86.6 0.93 3.2E-05 31.5 4.4 36 327-362 12-47 (83)
362 3mkq_A Coatomer beta'-subunit; 85.0 5.2 0.00018 41.0 11.3 105 335-450 682-797 (814)
363 4fhn_B Nucleoporin NUP120; pro 84.8 2.3 8E-05 45.9 8.6 91 337-427 845-963 (1139)
364 4b4t_S RPN3, 26S proteasome re 84.7 1.9 6.5E-05 41.4 6.9 64 370-433 233-301 (523)
365 2v6y_A AAA family ATPase, P60 83.5 1.5 5.3E-05 30.4 4.4 33 330-362 7-39 (83)
366 3kae_A CDC27, possible protein 82.8 9.2 0.00032 30.5 8.8 68 335-402 63-148 (242)
367 3ax2_A Mitochondrial import re 82.1 4.1 0.00014 27.4 5.8 36 334-369 17-52 (73)
368 4fhn_B Nucleoporin NUP120; pro 81.9 4.1 0.00014 44.0 9.1 92 342-437 820-935 (1139)
369 3txn_A 26S proteasome regulato 81.8 23 0.00078 32.8 12.9 101 331-431 16-168 (394)
370 3mkq_B Coatomer subunit alpha; 81.6 6.4 0.00022 31.8 7.9 76 340-428 11-86 (177)
371 4b4t_R RPN7, 26S proteasome re 81.3 6.3 0.00022 37.2 9.2 79 365-443 128-211 (429)
372 3mkq_B Coatomer subunit alpha; 80.9 7.3 0.00025 31.4 8.0 84 333-429 33-116 (177)
373 4gq2_M Nucleoporin NUP120; bet 80.1 8.4 0.00029 40.6 10.4 97 340-440 816-936 (950)
374 2crb_A Nuclear receptor bindin 78.4 3.7 0.00013 28.7 4.6 32 330-361 11-42 (97)
375 2v6x_A Vacuolar protein sortin 78.4 2.4 8.2E-05 29.6 3.9 33 330-362 9-41 (85)
376 2cpt_A SKD1 protein, vacuolar 78.0 2.9 9.9E-05 31.2 4.5 34 329-362 13-46 (117)
377 2vkj_A TM1634; membrane protei 77.8 6 0.0002 27.3 5.5 50 331-380 50-102 (106)
378 3lpz_A GET4 (YOR164C homolog); 77.6 28 0.00097 31.3 11.6 27 400-426 134-160 (336)
379 4a5x_A MITD1, MIT domain-conta 77.5 3.2 0.00011 29.0 4.4 31 332-362 14-44 (86)
380 1wfd_A Hypothetical protein 15 76.5 18 0.0006 25.6 10.1 35 328-362 9-43 (93)
381 2ijq_A Hypothetical protein; s 74.4 25 0.00086 27.8 9.2 64 333-396 31-103 (161)
382 1om2_A Protein (mitochondrial 73.3 11 0.00037 26.8 6.1 43 326-368 12-54 (95)
383 1qsa_A Protein (soluble lytic 72.0 13 0.00044 36.9 8.7 90 340-430 258-347 (618)
384 4b4t_S RPN3, 26S proteasome re 70.9 7.9 0.00027 37.2 6.6 70 332-401 229-303 (523)
385 1wy6_A Hypothetical protein ST 70.0 16 0.00055 28.1 6.7 63 380-444 103-165 (172)
386 1qsa_A Protein (soluble lytic 69.9 21 0.00073 35.4 9.7 118 337-455 217-338 (618)
387 3t5v_B Nuclear mRNA export pro 69.9 8.2 0.00028 36.6 6.5 62 340-401 182-254 (455)
388 2crb_A Nuclear receptor bindin 68.4 5.4 0.00019 27.9 3.5 21 405-425 18-38 (97)
389 1wy6_A Hypothetical protein ST 67.8 26 0.0009 26.9 7.5 55 344-398 101-155 (172)
390 2cfu_A SDSA1; SDS-hydrolase, l 67.5 9.8 0.00033 38.2 6.9 46 406-451 453-498 (658)
391 2v6y_A AAA family ATPase, P60 67.0 6.2 0.00021 27.3 3.8 30 351-395 9-38 (83)
392 3ax2_A Mitochondrial import re 63.7 16 0.00053 24.5 5.0 31 373-403 22-52 (73)
393 3re2_A Predicted protein; meni 62.3 48 0.0016 30.0 9.2 59 387-445 276-345 (472)
394 1gp8_A Protein (scaffolding pr 62.1 18 0.00063 20.4 4.2 28 10-37 9-36 (40)
395 2cfu_A SDSA1; SDS-hydrolase, l 61.1 9.6 0.00033 38.2 5.4 46 337-382 452-497 (658)
396 2wpv_A GET4, UPF0363 protein Y 60.1 76 0.0026 28.2 10.5 27 400-426 132-158 (312)
397 3t5x_A PCI domain-containing p 59.3 23 0.00079 29.3 6.7 90 331-428 11-108 (203)
398 4gq4_A Menin; tumor suppressor 58.4 73 0.0025 29.4 9.9 61 387-447 283-354 (489)
399 3mv2_A Coatomer subunit alpha; 56.6 69 0.0024 28.5 9.4 109 331-440 111-245 (325)
400 2rkl_A Vacuolar protein sortin 56.3 21 0.00073 22.1 4.3 36 328-363 14-49 (53)
401 3t5x_A PCI domain-containing p 52.6 31 0.001 28.5 6.3 38 368-405 14-51 (203)
402 2rpa_A Katanin P60 ATPase-cont 52.3 14 0.00049 25.1 3.4 30 334-363 12-41 (78)
403 2npu_A FKBP12-rapamycin comple 52.2 58 0.002 24.4 7.0 77 375-451 47-125 (126)
404 3u84_A Menin; MLL, JUND, ledgf 52.1 83 0.0028 29.1 9.1 59 387-445 298-367 (550)
405 2dl1_A Spartin; SPG20, MIT, st 50.1 21 0.00073 26.3 4.2 46 346-399 15-60 (116)
406 3spa_A Mtrpol, DNA-directed RN 49.5 1.1E+02 0.0038 32.4 10.8 80 369-450 128-214 (1134)
407 2dl1_A Spartin; SPG20, MIT, st 49.2 32 0.0011 25.3 5.1 44 382-433 17-60 (116)
408 2w2u_A Hypothetical P60 katani 48.8 41 0.0014 23.1 5.4 17 379-395 30-46 (83)
409 3mkr_B Coatomer subunit alpha; 48.6 1.5E+02 0.005 26.4 12.2 116 333-449 101-244 (320)
410 4b4t_P 26S proteasome regulato 48.2 1.5E+02 0.005 27.9 11.1 62 368-429 137-204 (445)
411 2cwy_A Hypothetical protein TT 47.3 46 0.0016 23.5 5.6 57 338-396 5-67 (94)
412 2d2s_A Exocyst complex compone 46.2 1.3E+02 0.0043 25.4 9.3 101 324-428 8-117 (235)
413 1om2_A Protein (mitochondrial 45.0 24 0.00082 25.0 3.7 31 373-403 25-55 (95)
414 1wfd_A Hypothetical protein 15 43.8 52 0.0018 23.1 5.4 32 350-396 12-43 (93)
415 2ijq_A Hypothetical protein; s 42.8 1E+02 0.0034 24.3 7.4 59 372-430 36-103 (161)
416 3myv_A SUSD superfamily protei 42.7 41 0.0014 31.8 6.3 31 367-397 189-219 (454)
417 2o8p_A 14-3-3 domain containin 42.6 1.4E+02 0.0048 25.0 8.7 65 333-397 119-197 (227)
418 4abx_A DNA repair protein RECN 42.0 64 0.0022 25.8 6.5 51 385-435 73-123 (175)
419 3mcx_A SUSD superfamily protei 41.6 55 0.0019 31.2 7.1 32 367-398 201-232 (477)
420 3kez_A Putative sugar binding 40.4 45 0.0015 31.6 6.2 32 366-397 194-225 (461)
421 4gq2_M Nucleoporin NUP120; bet 40.2 98 0.0033 32.5 9.2 52 374-429 816-867 (950)
422 3lew_A SUSD-like carbohydrate 39.6 50 0.0017 31.6 6.4 33 366-398 201-233 (495)
423 2yhe_A SEC-alkyl sulfatase; hy 43.4 7.1 0.00024 39.2 0.0 54 334-387 461-514 (668)
424 2vkj_A TM1634; membrane protei 37.2 1E+02 0.0035 21.3 6.5 31 401-431 52-82 (106)
425 3esl_A Checkpoint serine/threo 35.8 1.8E+02 0.0062 23.8 10.7 67 366-433 78-146 (202)
426 2oo2_A Hypothetical protein AF 35.8 69 0.0024 22.2 4.8 35 327-361 28-62 (86)
427 2rpa_A Katanin P60 ATPase-cont 35.8 26 0.0009 23.8 2.6 26 405-430 15-40 (78)
428 2yhe_A SEC-alkyl sulfatase; hy 41.5 8 0.00027 38.8 0.0 49 405-453 464-512 (668)
429 2pmr_A Uncharacterized protein 34.9 72 0.0024 22.1 4.8 36 326-361 31-66 (87)
430 3lvg_A Clathrin heavy chain 1; 34.1 0.9 3.1E-05 43.2 -6.5 156 257-449 90-276 (624)
431 4b4t_O 26S proteasome regulato 32.7 2.9E+02 0.01 25.3 10.4 86 345-430 87-197 (393)
432 3k49_A MRNA-binding protein PU 31.0 82 0.0028 28.7 6.2 62 11-78 39-100 (369)
433 3t5v_B Nuclear mRNA export pro 30.9 87 0.003 29.6 6.3 36 332-367 218-254 (455)
434 2ymb_A MITD1, MIT domain-conta 30.7 11 0.00036 32.5 0.0 33 331-363 20-52 (257)
435 2xze_A STAM-binding protein; h 30.6 53 0.0018 25.4 4.0 37 327-363 33-69 (146)
436 2v6x_A Vacuolar protein sortin 29.8 78 0.0027 21.6 4.4 17 380-396 25-41 (85)
437 2cpt_A SKD1 protein, vacuolar 29.6 61 0.0021 23.9 4.0 32 350-396 15-46 (117)
438 3hdx_A SUSD homolog, SUSD supe 28.6 94 0.0032 29.5 6.3 32 366-397 195-226 (478)
439 3qtm_A Uncharacterized protein 27.8 2E+02 0.0069 24.7 7.2 68 384-451 101-168 (346)
440 2jpu_A ORF C02003 protein; sol 27.8 63 0.0022 24.3 3.8 32 332-363 5-36 (129)
441 2wb7_A PT26-6P; extra chromoso 26.7 1.1E+02 0.0039 28.9 6.0 83 328-431 423-516 (526)
442 1o3u_A Conserved hypothetical 26.6 2E+02 0.0069 21.5 7.4 32 331-362 13-44 (135)
443 2yin_A DOCK2, dedicator of cyt 25.5 3.1E+02 0.011 25.6 9.1 31 333-363 34-64 (436)
444 2ynq_A ESSB; membrane protein, 25.3 2.5E+02 0.0084 22.0 11.7 87 335-427 9-98 (161)
445 3myv_A SUSD superfamily protei 24.9 1.4E+02 0.0048 28.0 6.8 47 384-430 164-218 (454)
446 3snx_A SUSD homolog, putative 24.7 95 0.0033 29.3 5.5 33 365-397 188-220 (460)
447 3esl_A Checkpoint serine/threo 24.5 2.4E+02 0.0081 23.1 7.0 71 331-402 77-149 (202)
448 3msv_A Nuclear import adaptor, 24.2 3.1E+02 0.011 24.0 7.8 70 384-453 148-217 (393)
449 2cwy_A Hypothetical protein TT 24.2 1.5E+02 0.0051 20.8 5.1 57 372-430 5-67 (94)
450 3qnk_A Putative lipoprotein; a 24.0 1.1E+02 0.0039 29.3 6.1 31 367-397 181-211 (517)
451 3kez_A Putative sugar binding 23.6 1.5E+02 0.0053 27.8 6.8 47 384-430 170-224 (461)
452 1wcr_A PTS system, N, N'-diace 23.5 1.1E+02 0.0036 22.1 4.2 30 332-361 16-45 (103)
453 2e2a_A Protein (enzyme IIA); h 23.4 1.2E+02 0.0042 21.8 4.5 31 332-362 18-48 (105)
454 3lvg_A Clathrin heavy chain 1; 23.1 2.1 7.2E-05 40.8 -6.1 83 366-454 52-134 (624)
455 3lew_A SUSD-like carbohydrate 22.4 1.6E+02 0.0055 28.1 6.7 48 384-431 174-232 (495)
456 2uwj_G Type III export protein 22.3 2.2E+02 0.0075 20.4 5.7 69 360-433 31-100 (115)
457 2p58_C Putative type III secre 22.0 2.3E+02 0.0077 20.4 7.1 78 350-433 23-101 (116)
458 3k1s_A PTS system, cellobiose- 21.1 1.4E+02 0.0049 21.6 4.5 30 332-361 20-49 (109)
459 3fap_B FRAP, FKBP12-rapamycin 20.8 2.3E+02 0.0077 19.9 6.5 75 375-449 17-93 (94)
460 2br9_A 14-3-3E, 14-3-3 protein 20.6 2.2E+02 0.0077 23.9 6.3 46 351-396 147-201 (234)
461 3jq1_A SUSD superfamily protei 20.4 91 0.0031 29.7 4.5 30 367-396 179-208 (481)
462 2npm_A 14-3-3 domain containin 20.0 2.4E+02 0.0082 24.2 6.4 46 351-396 173-226 (260)
No 1
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-44 Score=329.84 Aligned_cols=260 Identities=25% Similarity=0.349 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCC
Q 012683 12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE 91 (458)
Q Consensus 12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~ 91 (458)
..+.++|+.|+..|++++|++|++.. ..+ ....+..|.||||+|+..|+.+++++|++. |.+++..+..|.
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g----~~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~ 73 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGG----ANV----NFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGA 73 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTT----CCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCC
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcC----CCc----ccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCC
Confidence 46788999999999999999999872 222 222367899999999999999999999998 999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC----------C-CCCcHHH
Q 012683 92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE----------S-DAGTPLI 160 (458)
Q Consensus 92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~----------~-~~~t~l~ 160 (458)
||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.. + .+.||||
T Consensus 74 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765 3 3449999
Q ss_pred HHHhCCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHH
Q 012683 161 WAAGHGQQEAVKVLLEH-HANPNAETEDNITPLLSAVAAGS----LTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE 234 (458)
Q Consensus 161 ~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~ 234 (458)
+|+..|+.+++++|++. |.+++..+..|.||||.|+..++ .+++++|+++|++++.. ..|.||||+|+..|+.+
T Consensus 154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 233 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233 (285)
T ss_dssp HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 99999999999999997 99999999999999999999999 99999999999999987 77999999999999999
Q ss_pred HHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCC
Q 012683 235 IIKCLLK-AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280 (458)
Q Consensus 235 iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~ 280 (458)
++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|....
T Consensus 234 ~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 9999999 899999999999999999999999999999999987644
No 2
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.3e-45 Score=334.61 Aligned_cols=269 Identities=23% Similarity=0.274 Sum_probs=218.2
Q ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCC--CchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 012683 7 HALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGK--GLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVD 84 (458)
Q Consensus 7 ~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~--~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~ 84 (458)
+.-+.+.+.+.||.|+..|+.+.+..++...+.... .+........|.+|.||||+|+..|+.+++++|++. |.+++
T Consensus 8 ~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~ 86 (285)
T 3d9h_A 8 HHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVN 86 (285)
T ss_dssp ----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSC
T ss_pred ccccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCC
Confidence 445677889999999999999888887765332111 112233456788999999999999999999999997 99999
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHh
Q 012683 85 TQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAG 164 (458)
Q Consensus 85 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~ 164 (458)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++....+.||||+|+.
T Consensus 87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 87 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR 166 (285)
T ss_dssp EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHH
T ss_pred CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777799999999
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q 012683 165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGA 244 (458)
Q Consensus 165 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~ 244 (458)
.|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++....|.||||+|+..|+.+++++|+++|+
T Consensus 167 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 246 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA 246 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999977889999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 245 ~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
+++.+|..|+||||+|+ ++.+++++|+++...
T Consensus 247 d~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a 278 (285)
T 3d9h_A 247 DTQAKNAEGKRPVELVP--PESPLAQLFLEREGA 278 (285)
T ss_dssp CTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC--
T ss_pred CCCCcCCCCCCHHHHhc--CccHHHHHHHHhhcc
Confidence 99999999999999999 567999999987443
No 3
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.9e-44 Score=347.44 Aligned_cols=302 Identities=31% Similarity=0.465 Sum_probs=260.8
Q ss_pred CchhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 012683 3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD 82 (458)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~ 82 (458)
|+++.......+.++||.|+..|++++|++|++. +.+ .+..+..|.||||+|+..|+.+++++|++. |.+
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~----g~~-----~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~ 72 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQR----GAS-----PNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAK 72 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHHT----TCC-----SCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCC
T ss_pred CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHc----CCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCC
Confidence 3444445566788999999999999999999986 332 245678899999999999999999999998 999
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHH
Q 012683 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIW 161 (458)
Q Consensus 83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~ 161 (458)
++.++..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.+.+.+..+..+ ||||+
T Consensus 73 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~ 152 (437)
T 1n11_A 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 152 (437)
T ss_dssp SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887666544 99999
Q ss_pred HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHH
Q 012683 162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLL 240 (458)
Q Consensus 162 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll 240 (458)
|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+
T Consensus 153 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877 67999999999999999999999
Q ss_pred HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCC
Q 012683 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDK 317 (458)
Q Consensus 241 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (458)
++|++++..+..|.||||+|+..|+.+++++|++.+... +..+....+++.+ +......+.++.+++.+...+.
T Consensus 233 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~--A~~~~~~~~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHL--VAQEGHVPVADVLIKHGVMVDA 306 (437)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHH--HHHHTCHHHHHHHHHHTCCTTC
T ss_pred HcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHH--HHHcCCHHHHHHHHhCCccCCC
Confidence 999999999999999999999999999999999987643 3334444444444 4445678888899988877653
No 4
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.8e-43 Score=341.08 Aligned_cols=289 Identities=29% Similarity=0.385 Sum_probs=162.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683 15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL 94 (458)
Q Consensus 15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L 94 (458)
.++||.|+..|+.+++++|++. +.. .+..+.+|.||||+|+..|+.+++++|++. |++++..+..|.|||
T Consensus 48 ~t~L~~A~~~g~~~~v~~Ll~~----g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L 117 (437)
T 1n11_A 48 ETPLHMAARAGHTEVAKYLLQN----KAK-----VNAKAKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPL 117 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHH----TCC-----SSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhC----CCC-----CCCCCCCCCCHHHHHHHCCCHHHHHHHHhC-CCCCCCCCCCCCcHH
Confidence 4567777777777777777765 222 234556677777777777777777777766 666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHH
Q 012683 95 LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV 173 (458)
Q Consensus 95 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~ 173 (458)
|+|+..|+.+++++|++++++.+..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..++.+++++
T Consensus 118 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 197 (437)
T 1n11_A 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197 (437)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 66666666666666666666665555566666666666666666666666665555444332 55555555555555555
Q ss_pred HHhcCCCCCCCCCCCC---------------------------------cHHHHHHHcCCHHHHHHHHHcCCCcccc-CC
Q 012683 174 LLEHHANPNAETEDNI---------------------------------TPLLSAVAAGSLTCLDLLIQAGANANIV-AG 219 (458)
Q Consensus 174 Ll~~~~~~~~~~~~~~---------------------------------t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~ 219 (458)
|+++|.+++..+..|. ||||+|+..|+.+++++|+++|++++.. ..
T Consensus 198 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 277 (437)
T 1n11_A 198 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277 (437)
T ss_dssp HGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCC
Confidence 5555555444444444 4444444444445555555544444444 34
Q ss_pred CCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 012683 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESG 299 (458)
Q Consensus 220 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (458)
|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|++++... +..+..+.++ +..+...
T Consensus 278 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~--L~~A~~~ 354 (437)
T 1n11_A 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSP--LHQAAQQ 354 (437)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCH--HHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC-CCCCCCCCCH--HHHHHHC
Confidence 555555555555555555555555555555555555555555555555555555554321 2222222222 2223333
Q ss_pred chhHHhhhhhcCCCCCC
Q 012683 300 KQLEETRNLKENNAPKD 316 (458)
Q Consensus 300 ~~~~~~~~l~~~~~~~~ 316 (458)
...+.++.|++.++.++
T Consensus 355 g~~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 355 GHTDIVTLLLKNGASPN 371 (437)
T ss_dssp TCHHHHHHHHHTTCCSC
T ss_pred ChHHHHHHHHHCcCCCC
Confidence 44555555555555443
No 5
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.5e-42 Score=324.60 Aligned_cols=289 Identities=24% Similarity=0.341 Sum_probs=254.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcc-cCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCC
Q 012683 11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKD-ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDED 89 (458)
Q Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~ 89 (458)
...+.++||.||+.||+++|+.|++. |+++ +..+ ..|.||||+||..|+.++|++|+++ |++++..+..
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~----Gadv-----n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~ 91 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEG----GANV-----NFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKN 91 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH----TCCT-----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHC----CCCC-----CccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhhccC
Confidence 45678899999999999999999987 4443 3344 4599999999999999999999998 9999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-----------CCCcH
Q 012683 90 GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-----------DAGTP 158 (458)
Q Consensus 90 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-----------~~~t~ 158 (458)
+.++++.++..++..++..+++.+++++..+..|.||||+|+..|+.+++++|++.|++++... .+.||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~ 171 (337)
T 4g8k_A 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171 (337)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred CCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence 9999999999999999999999999999999999999999999999999999999998876432 23499
Q ss_pred HHHHHhCCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCc
Q 012683 159 LIWAAGHGQQEAVKVLLE-HHANPNAETEDNITPLLSAVAAGS----LTCLDLLIQAGANANIV-AGGATPLHIAADIGS 232 (458)
Q Consensus 159 l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~ 232 (458)
||+|+..|+.+++++|++ .|++++..+..|.|+++.++..+. ..++++|+++|++++.. ..|.||||+|+..|+
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence 999999999999999996 599999999999999998876654 35889999999999988 679999999999999
Q ss_pred HHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcC
Q 012683 233 TEIIKCLLKA-GADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKEN 311 (458)
Q Consensus 233 ~~iv~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (458)
.++|++|++. |++++.+|..|+||||+|+..|+.++|++|+++|+.... .+ ++..+......+.++.|++.
T Consensus 252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~------~~--~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC------GD--LVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT------CC--HHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------CC--HHHHHHHcCCHHHHHHHHHC
Confidence 9999999985 899999999999999999999999999999999875422 12 34445556778899999999
Q ss_pred CCCCCC
Q 012683 312 NAPKDK 317 (458)
Q Consensus 312 ~~~~~~ 317 (458)
++.++.
T Consensus 324 GA~~d~ 329 (337)
T 4g8k_A 324 GAKEDF 329 (337)
T ss_dssp TCCC--
T ss_pred cCCCCC
Confidence 988763
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.6e-42 Score=324.97 Aligned_cols=282 Identities=28% Similarity=0.345 Sum_probs=243.7
Q ss_pred CchhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 012683 3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD 82 (458)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~ 82 (458)
|.+........+.++|+.||..|+.+.|++++.. .....+..|..|.||||+|+..|+.++|++|++. |.+
T Consensus 13 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~--------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~ 83 (351)
T 3utm_A 13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP--------LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GAD 83 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCT--------TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred CceeeeeeccccchhHHHHHHcCCHHHHHHHHHh--------cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 4455556667788999999999999999999864 2223466788999999999999999999999998 999
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHH
Q 012683 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIW 161 (458)
Q Consensus 83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~ 161 (458)
++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ +|+++
T Consensus 84 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~ 163 (351)
T 3utm_A 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163 (351)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988766544 66554
Q ss_pred ---------------------HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccc
Q 012683 162 ---------------------AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA---GSLTCLDLLIQAGANANIV 217 (458)
Q Consensus 162 ---------------------A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~ 217 (458)
++..+..+.++.++..+......+..|.||||+|+.. +..+++++|++.|++++..
T Consensus 164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~ 243 (351)
T 3utm_A 164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243 (351)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC
T ss_pred HhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc
Confidence 4566777777777776665566778899999999999 5578999999999999877
Q ss_pred -CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHH
Q 012683 218 -AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYM 294 (458)
Q Consensus 218 -~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 294 (458)
..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++++.+ ++..+..+.+++.+.
T Consensus 244 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~~~~g~tal~~a 320 (351)
T 3utm_A 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMG 320 (351)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHS
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCChhhhh
Confidence 6799999999999999999999999999999999999999999999999999999998764 455555566666654
No 7
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.7e-42 Score=313.04 Aligned_cols=229 Identities=28% Similarity=0.372 Sum_probs=181.9
Q ss_pred hhhcccCCCcHHHHHHHcC-------------CHHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683 49 ADIKDANKRGALHFAAREG-------------KTDVCKYLLEELKLDVDT-QDEDGETPLLHAARQGHTETAKYLFEHGA 114 (458)
Q Consensus 49 ~~~~~~~g~t~L~~A~~~g-------------~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 114 (458)
.+.+|.+|.||||+|+..| +.+++++|++. |.+++. .+..|.||||+|+..|+.+++++|+++|+
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 3567889999999999987 89999999998 777754 58999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 012683 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192 (458)
Q Consensus 115 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l 192 (458)
+++..+..|.||||+|+..|+.+++++|++.+. +++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L 161 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 999999999999999999999999999999987 777666544 999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHh
Q 012683 193 LSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271 (458)
Q Consensus 193 ~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 271 (458)
|+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+.+|+.+++++
T Consensus 162 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241 (253)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999988 779999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCC
Q 012683 272 LFPLTSE 278 (458)
Q Consensus 272 Ll~~~~~ 278 (458)
|......
T Consensus 242 l~~~~~~ 248 (253)
T 1yyh_A 242 LDLEHHH 248 (253)
T ss_dssp HHC----
T ss_pred HHHHhhh
Confidence 9976543
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5e-42 Score=311.34 Aligned_cols=220 Identities=26% Similarity=0.381 Sum_probs=209.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 134 (458)
+|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 589999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 012683 135 NIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214 (458)
Q Consensus 135 ~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~ 214 (458)
+.+++++|++.|++++....+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp CHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 99999999999999988777779999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683 215 NIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS 277 (458)
Q Consensus 215 ~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 277 (458)
+....|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..+ +++++|++.+.
T Consensus 161 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~ 221 (261)
T 2xai_A 161 NQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREG 221 (261)
T ss_dssp TCCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-C
T ss_pred CCCCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccC
Confidence 97788999999999999999999999999999999999999999999655 48889988644
No 9
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.2e-42 Score=306.28 Aligned_cols=227 Identities=27% Similarity=0.353 Sum_probs=208.1
Q ss_pred hhcccCCCcHHHHHHHcCCHHHHHHHHH---hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 012683 50 DIKDANKRGALHFAAREGKTDVCKYLLE---ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA 126 (458)
Q Consensus 50 ~~~~~~g~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~ 126 (458)
+..|.+|.||||+||..|+.+++++|++ ..+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 5678899999999999999999999997 3489999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC----CCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCC
Q 012683 127 LHHSAGIGNIELLTYLLSKGA----EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET-EDNITPLLSAVAAGS 200 (458)
Q Consensus 127 L~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~ 200 (458)
||+|+..|+.+++++|++.+. +++..+..+ ||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999999987 666555444 99999999999999999999999999988 889999999999999
Q ss_pred HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 201 LTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 201 ~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|+.++++.|.+.+
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 99999999999999987 78999999999999999999999999999999999999999999999999999998754
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=7.2e-43 Score=333.43 Aligned_cols=255 Identities=25% Similarity=0.371 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcc-cCCCcHHHHHHHcCCHHHHHHHHH-------hCCCCC
Q 012683 12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKD-ANKRGALHFAAREGKTDVCKYLLE-------ELKLDV 83 (458)
Q Consensus 12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~ll~-------~~~~~~ 83 (458)
..+.++||.|+..| .++++.|+.. ..+..| ..|.||||+|+..|+.+++++|+. ..|+++
T Consensus 92 ~~g~t~L~~Aa~~~-~~~~~~L~~~-----------~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v 159 (373)
T 2fo1_E 92 PESPIKLHTEAAGS-YAITEPITRE-----------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159 (373)
T ss_dssp --CCCHHHHHHHSS-SCCCSCCSTT-----------TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT
T ss_pred CCCccHHHHHhcCC-chHHHHhccc-----------cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 34466788888854 4566655321 234555 789999999999999988888763 349999
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC---CCCCCCCCCC-cHH
Q 012683 84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG---AEVDSESDAG-TPL 159 (458)
Q Consensus 84 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~---~~~~~~~~~~-t~l 159 (458)
+..|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.+ .+++..+..+ |||
T Consensus 160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L 239 (373)
T 2fo1_E 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239 (373)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999988 6777666555 999
Q ss_pred HHHHhCC---CHHHHHHHHhcCCCCCC--------CCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccc-CCCCcHHHH
Q 012683 160 IWAAGHG---QQEAVKVLLEHHANPNA--------ETEDNITPLLSAVAAGSLTCLDLLIQAG-ANANIV-AGGATPLHI 226 (458)
Q Consensus 160 ~~A~~~~---~~~~~~~Ll~~~~~~~~--------~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~-~~g~t~L~~ 226 (458)
|+|+..+ +.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.| ++++.. ..|.||||+
T Consensus 240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~ 319 (373)
T 2fo1_E 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319 (373)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred HHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHH
Confidence 9999998 89999999999999886 5678999999999999999999999886 999987 779999999
Q ss_pred HHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 227 A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|+++++.
T Consensus 320 A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999998764
No 11
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-40 Score=306.54 Aligned_cols=260 Identities=28% Similarity=0.338 Sum_probs=237.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 133 (458)
+|.||||.|+..|+++++++|++. |.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 578999999999999999999998 8899887 78899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCC----------CCCCCcHHHHHHHcCCHH
Q 012683 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE----------TEDNITPLLSAVAAGSLT 202 (458)
Q Consensus 134 ~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~~~~~ 202 (458)
|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|.+++.. +..|.||||.|+..|+.+
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 162 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence 99999999999999998777655 9999999999999999999999999887 778999999999999999
Q ss_pred HHHHHHHc-CCCcccc-CCCCcHHHHHHhcCc----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 203 CLDLLIQA-GANANIV-AGGATPLHIAADIGS----TEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 203 ~~~~Ll~~-g~~~~~~-~~g~t~L~~A~~~~~----~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
++++|++. |++++.. ..|.||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++..
T Consensus 163 ~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 242 (285)
T 1wdy_A 163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242 (285)
T ss_dssp HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc
Confidence 99999998 9999987 779999999999999 99999999999999999999999999999999999999999955
Q ss_pred CCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCC
Q 012683 277 SEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDK 317 (458)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (458)
..+.+..+..+.+++.++. .....+.++.|++.++.++.
T Consensus 243 g~~~~~~~~~g~t~l~~A~--~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 243 HIEINDTDSDGKTALLLAV--ELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp SCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHHSSCSCC
T ss_pred CCCccccCCCCCcHHHHHH--HcCcHHHHHHHHHcCCCCCc
Confidence 5555666666666665554 44678899999999988753
No 12
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=7.3e-41 Score=299.34 Aligned_cols=224 Identities=32% Similarity=0.510 Sum_probs=212.2
Q ss_pred hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128 (458)
Q Consensus 49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 128 (458)
.+..+.+|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 356788999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCC-CCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 012683 129 HSAGIGNIELLTYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL 206 (458)
Q Consensus 129 ~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 206 (458)
+|+..|+.+++++|++.+ .+++..+..+ ||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 999999999999999998 7777666544 99999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 012683 207 LIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273 (458)
Q Consensus 207 Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 273 (458)
|++.|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+++.+.+..++
T Consensus 163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999987 67999999999999999999999999999999999999999999999986665554
No 13
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.8e-41 Score=299.94 Aligned_cols=225 Identities=30% Similarity=0.368 Sum_probs=214.1
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683 53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG 132 (458)
Q Consensus 53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 132 (458)
+..+.||||.|+..|++++++++++..+..++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence 45688999999999999999999998666678889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012683 133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG 211 (458)
Q Consensus 133 ~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 211 (458)
.|+.+++++|++.|++++..+..+ ||||+|+..++.+++++|+++|.+++..+..|.||||+|+..|+.+++++|+++|
T Consensus 83 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 162 (231)
T 3aji_A 83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162 (231)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence 999999999999999998777655 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683 212 ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS 277 (458)
Q Consensus 212 ~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 277 (458)
++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..++.+++++|.++++
T Consensus 163 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 999987 789999999999999999999999999999999999999999999999999999987654
No 14
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.2e-41 Score=322.65 Aligned_cols=227 Identities=26% Similarity=0.359 Sum_probs=209.5
Q ss_pred hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128 (458)
Q Consensus 49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 128 (458)
.+..|.+|.||||+||..|+.++|++|++. |++++..+..|.||||+|+..|+.++|++|+++|++++. ..|.||||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~ 89 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH 89 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence 455678899999999999999999999998 999999999999999999999999999999999996654 57999999
Q ss_pred HHHHcCCHHHHHHHHhC----CCCCCC-----------------CC-CCCcHHHHHHhCC--CHHHHHHHHhcCCCCCCC
Q 012683 129 HSAGIGNIELLTYLLSK----GAEVDS-----------------ES-DAGTPLIWAAGHG--QQEAVKVLLEHHANPNAE 184 (458)
Q Consensus 129 ~A~~~~~~~~~~~Ll~~----~~~~~~-----------------~~-~~~t~l~~A~~~~--~~~~~~~Ll~~~~~~~~~ 184 (458)
+|+..|+.+++++|++. |.+++. .+ .+.||||+|+..| +.+++++|+++|++++..
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~ 169 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK 169 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence 99999999999999998 666543 33 3449999999999 999999999999999999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----cccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683 185 TEDNITPLLSAVAAGSLTCLDLLIQAGAN-----ANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258 (458)
Q Consensus 185 ~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~ 258 (458)
+..|.||||+|+..|+.+++++|+++|++ ++.. ..|.||||+|+..|+.++|++|+++|++++.+|..|+||||
T Consensus 170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 249 (364)
T 3ljn_A 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY 249 (364)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999 8776 67999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHhhcCCCCC
Q 012683 259 VAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 259 ~A~~~~~~~~v~~Ll~~~~~ 278 (458)
+|+..|+.+++++|++++..
T Consensus 250 ~A~~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 250 LSVRAAMVLLTKELLQKTDV 269 (364)
T ss_dssp HHHHTCCHHHHHHHHHHSCH
T ss_pred HHHHhChHHHHHHHHHcCCc
Confidence 99999999999999988653
No 15
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.7e-40 Score=302.74 Aligned_cols=248 Identities=25% Similarity=0.263 Sum_probs=193.3
Q ss_pred hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 012683 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLD---VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGAT 125 (458)
Q Consensus 49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t 125 (458)
++..|.+|.||||+|+..|+.++|++|++. +.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 356788999999999999999999999998 776 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCC--------------CCCcHHHHHHhCCC-HHHHHHHHhcCCCCCCCCCCCCc
Q 012683 126 ALHHSAGIGNIELLTYLLSKGAEVDSES--------------DAGTPLIWAAGHGQ-QEAVKVLLEHHANPNAETEDNIT 190 (458)
Q Consensus 126 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~t~l~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~~t 190 (458)
|||+|+..|+.+++++|++.+++..... ...++++.+...+. ......+...+.+++..+..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 9999999999999999999987643211 11245555444433 33344555667788888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccC--CCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683 191 PLLSAVAAGSLTCLDLLIQAGANANIVA--GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREA 268 (458)
Q Consensus 191 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 268 (458)
|||+|+..|+.+++++|+++|++++... .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.++
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~ 240 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence 9999999999999999999999999873 49999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCCCcchhhHHHHHHhhc
Q 012683 269 VEILFPLTSEDPSIPKWTVDGILEYMQSES 298 (458)
Q Consensus 269 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (458)
+++|+++|... +..+..+.+++.+....+
T Consensus 241 v~~Ll~~ga~~-~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 241 ARLLRAHGAPE-PEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHTTCCC-CCCC--------------
T ss_pred HHHHHHcCCCc-CcCCCcccccccccCCcc
Confidence 99999988763 445555556665554443
No 16
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-41 Score=305.46 Aligned_cols=223 Identities=26% Similarity=0.360 Sum_probs=176.2
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHhCCCC--------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCC
Q 012683 52 KDANKRGALHFAAREGKTDVCKYLLEELKLD--------VDTQDEDGETPLLHAARQGHT-ETAKYLFEHGANPTIPSNL 122 (458)
Q Consensus 52 ~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~--------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~ 122 (458)
+|..+.++|+.||..|++++|++|++. +.+ ++..+..|.|||+.|+..++. .++++|++.|++++..|..
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~-~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEW-TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTC-C----------------------------------------CCCCTTCCCTT
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHC-CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 566678999999999999999999987 543 455677899999999988765 5889999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL 201 (458)
Q Consensus 123 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~ 201 (458)
|.||||+|+..|+.+++++|++.|++++..+..+ ||+++|+..++.+++++|++.|++++..|..|.||||+|+..|+.
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 9999999999999999999999999998777655 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-HHHHHhhcCC
Q 012683 202 TCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN-REAVEILFPL 275 (458)
Q Consensus 202 ~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~ 275 (458)
+++++|+++|++++.. ..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+++ .+++++|...
T Consensus 166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~ 241 (269)
T 4b93_B 166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC 241 (269)
T ss_dssp GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC----
T ss_pred HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHh
Confidence 9999999999999988 789999999999999999999999999999999999999999988775 3444444433
No 17
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=298.24 Aligned_cols=247 Identities=24% Similarity=0.305 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
.+.++||.||..|+.++|++|++. +.+ .+..|.+|.||||+|+..|+.+++++|++. |++++..+..|.|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~----g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t 71 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ----GWA-----VNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHT 71 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT----TCC-----SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC----CCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCC
Confidence 356789999999999999999986 332 356788999999999999999999999998 9999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHH
Q 012683 93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAV 171 (458)
Q Consensus 93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~ 171 (458)
|||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++
T Consensus 72 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 150 (261)
T 2xai_A 72 PLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 150 (261)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHH
Confidence 999999999999999999999998854 569999999999999999999999999998777655 999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCC----
Q 012683 172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADP---- 246 (458)
Q Consensus 172 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~---- 246 (458)
++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..+ +++++|++++..+
T Consensus 151 ~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~ 227 (261)
T 2xai_A 151 KKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQ 227 (261)
T ss_dssp HHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHH
T ss_pred HHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHH
Confidence 999999999985 888999999999999999999999999999988 78999999999655 5999999987654
Q ss_pred ----CCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 012683 247 ----NVTDEDGQKPIQVAAARGNREAVEILF 273 (458)
Q Consensus 247 ----~~~~~~g~t~l~~A~~~~~~~~v~~Ll 273 (458)
+.+|..|+||+|.|......+.++-++
T Consensus 228 ~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 228 LCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp HHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred HHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 468999999999999887776666554
No 18
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.4e-39 Score=287.29 Aligned_cols=223 Identities=29% Similarity=0.355 Sum_probs=209.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683 15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL 94 (458)
Q Consensus 15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L 94 (458)
.++|+.|+..|+++.++++++. .+...+..+.+|.||||+|+..|+.+++++|++. |.+++..+..|.|||
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~--------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L 77 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILA--------DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPL 77 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHH--------CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHH
T ss_pred cchHHHHHHhCCHHHHHHHHHh--------chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHH
Confidence 3569999999999999999987 3344667789999999999999999999999998 999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHH
Q 012683 95 LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV 173 (458)
Q Consensus 95 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~ 173 (458)
|+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|.+++..+..+ ||||+|+..|+.+++++
T Consensus 78 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 157 (231)
T 3aji_A 78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157 (231)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998776655 99999999999999999
Q ss_pred HHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q 012683 174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADP 246 (458)
Q Consensus 174 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~ 246 (458)
|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..++.+++++|+++|+++
T Consensus 158 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred HHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence 99999999999999999999999999999999999999999987 77999999999999999999999987653
No 19
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.9e-40 Score=316.25 Aligned_cols=262 Identities=22% Similarity=0.262 Sum_probs=229.4
Q ss_pred CchhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 012683 3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD 82 (458)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~ 82 (458)
|.......-..+.++||.||..|+.++|++|++. +.+ .+..|..|.||||+|+..|+.++|++|++. |.+
T Consensus 9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~----g~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~ 78 (364)
T 3ljn_A 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET----GVS-----PTIQNRFGCTALHLACKFGCVDTAKYLASV-GEV 78 (364)
T ss_dssp -------CCHHHHHHHHHHHHHTCHHHHHHHHHT----TCC-----TTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCC
T ss_pred cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCC
Confidence 3344444566789999999999999999999986 333 366788999999999999999999999998 775
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCC-----------------CCCCCCcHHHHHHHcC--CHHHH
Q 012683 83 VDTQDEDGETPLLHAARQGHTETAKYLFEH----GANPTI-----------------PSNLGATALHHSAGIG--NIELL 139 (458)
Q Consensus 83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~~ 139 (458)
++. ..|.||||+|+..|+.+++++|++. |.+++. .+..|.||||+|+..| +.+++
T Consensus 79 ~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v 156 (364)
T 3ljn_A 79 HSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMI 156 (364)
T ss_dssp CCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHH
T ss_pred ccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHH
Confidence 544 5799999999999999999999998 777665 7788999999999999 99999
Q ss_pred HHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 012683 140 TYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN-----PNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213 (458)
Q Consensus 140 ~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 213 (458)
++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 157 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad 236 (364)
T 3ljn_A 157 KILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236 (364)
T ss_dssp HHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC
T ss_pred HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999998877655 999999999999999999999998 999999999999999999999999999999999
Q ss_pred cccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCC------------CCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 214 ANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN------------VTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 214 ~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~------------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
++.. ..|.||||+|+..|+.++|++|+++|++++ ..+..|+||+++|+..++.+.+..|+..+
T Consensus 237 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~ 312 (364)
T 3ljn_A 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence 9988 789999999999999999999999986542 25668899999999999887777776543
No 20
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.8e-39 Score=286.50 Aligned_cols=227 Identities=24% Similarity=0.309 Sum_probs=211.7
Q ss_pred hcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHH
Q 012683 51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHH 129 (458)
Q Consensus 51 ~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~ 129 (458)
..|..|.|+||.|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|.+++..+ ..|.||||+
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 3467889999999999999999999998 99999999999999999999999999999999999887554 459999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHH
Q 012683 130 SAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS-LTCLDLL 207 (458)
Q Consensus 130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~L 207 (458)
|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++ .+++++|
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L 162 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence 999999999999999999998776555 99999999999999999999999999999999999999997766 8999999
Q ss_pred HHcCCCcccc-C-CCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 208 IQAGANANIV-A-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 208 l~~g~~~~~~-~-~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
++.|++++.. . .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.+..
T Consensus 163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 9999999988 3 799999999999999999999999999999999999999999999999999999988764
No 21
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.6e-39 Score=294.97 Aligned_cols=253 Identities=22% Similarity=0.276 Sum_probs=198.6
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHhC----------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 012683 52 KDANKRGALHFAAREGKTDVCKYLLEEL----------KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSN 121 (458)
Q Consensus 52 ~~~~g~t~L~~A~~~g~~~~v~~ll~~~----------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 121 (458)
....|.|+||+|+..|+.+.+..++... ...++..+..|+||||+|+..|+.+++++|++.|++++..+.
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~ 90 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 3457999999999999987777755431 223566788999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683 122 LGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS 200 (458)
Q Consensus 122 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~ 200 (458)
.|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+ .|.||||+|+..|+
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~ 169 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGH 169 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTC
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCC
Confidence 99999999999999999999999999998777655 99999999999999999999999987644 59999999999999
Q ss_pred HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683 201 LTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279 (458)
Q Consensus 201 ~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 279 (458)
.+++++|++.|++++.. ..|.||||+|+..|+.++|++|+++|++++. +..|+||||+|+..|+.+++++|++++.+
T Consensus 170 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad- 247 (285)
T 3d9h_A 170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD- 247 (285)
T ss_dssp HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence 99999999999999987 7899999999999999999999999999995 89999999999999999999999998764
Q ss_pred CCCCCcchhhHHHHHHhhccchhHHhhhhhcC
Q 012683 280 PSIPKWTVDGILEYMQSESGKQLEETRNLKEN 311 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (458)
.+..+..+.+++.++. +..+.++.+++.
T Consensus 248 ~~~~d~~g~t~l~~A~----~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 248 TQAKNAEGKRPVELVP----PESPLAQLFLER 275 (285)
T ss_dssp TTCCCTTSCCGGGGSC----TTSHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHhc----CccHHHHHHHHh
Confidence 4455555555555544 224555666655
No 22
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.9e-40 Score=313.79 Aligned_cols=297 Identities=18% Similarity=0.213 Sum_probs=221.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhhcC------------CCc---hhhhhhhcccCCCcHHHHHHHcCCHHHHHHH
Q 012683 11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQG------------KGL---SKTVADIKDANKRGALHFAAREGKTDVCKYL 75 (458)
Q Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~------------~~~---~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~l 75 (458)
....-.+|+.++..|+.+.++.++++..+.. ..+ .-.+....+..|.||||+|+..|+ +++++|
T Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L 112 (373)
T 2fo1_E 34 ITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPI 112 (373)
T ss_dssp ------------------------------------------------------------CCCHHHHHHHSSS-CCCSCC
T ss_pred ccccccccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHh
Confidence 3456667888888999888887775543211 000 012334568899999999999665 778777
Q ss_pred HHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHH--------HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 012683 76 LEELKLDVDTQD-EDGETPLLHAARQGHTETAKYLF--------EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG 146 (458)
Q Consensus 76 l~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 146 (458)
+. .+++..+ ..|.||||+|+..|+.+++++|+ +.|++++..|..|.||||+|+..|+.+++++|++.|
T Consensus 113 ~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 189 (373)
T 2fo1_E 113 TR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG 189 (373)
T ss_dssp ST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC
Confidence 53 4778887 78999999999999998887776 899999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcC---CCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCcccc--
Q 012683 147 AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH---ANPNAETEDNITPLLSAVAAG---SLTCLDLLIQAGANANIV-- 217 (458)
Q Consensus 147 ~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~---~~~~~~~~~~~t~l~~a~~~~---~~~~~~~Ll~~g~~~~~~-- 217 (458)
++++..+..+ ||||+|+..|+.+++++|++++ .+++..+..|.||||+|+..+ +.+++++|+++|++++..
T Consensus 190 a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~ 269 (373)
T 2fo1_E 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269 (373)
T ss_dssp CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence 9998777655 9999999999999999999988 799999999999999999998 899999999999999862
Q ss_pred -------CCCCcHHHHHHhcCcHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhh
Q 012683 218 -------AGGATPLHIAADIGSTEIIKCLLKAG-ADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDG 289 (458)
Q Consensus 218 -------~~g~t~L~~A~~~~~~~iv~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 289 (458)
..|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.++|++|++++... +..+..+.+
T Consensus 270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~-~~~d~~g~t 348 (373)
T 2fo1_E 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHT 348 (373)
T ss_dssp GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSSSCC
T ss_pred cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cCCCCCCCC
Confidence 46999999999999999999999875 999999999999999999999999999999987653 334444455
Q ss_pred HHHHHHhhccchhHHhhhhhcCCCC
Q 012683 290 ILEYMQSESGKQLEETRNLKENNAP 314 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (458)
++.+ +......+.++.|++.++.
T Consensus 349 ~l~~--A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 349 ARQL--AQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHH--HHHTTCHHHHHHHHTTC--
T ss_pred HHHH--HHHcCCHHHHHHHHhcCcc
Confidence 5544 4555778888888887754
No 23
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.6e-39 Score=285.29 Aligned_cols=217 Identities=26% Similarity=0.329 Sum_probs=197.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHH
Q 012683 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG--ANPTI-PSNLGATALHHSAG 132 (458)
Q Consensus 56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~A~~ 132 (458)
|+||||+|+..|+.+++++|++..+...+..+..|.||||+|+..|+.+++++|++.| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6899999999999999999999833344558999999999999999999999999999 55555 78899999999999
Q ss_pred cCCHHHHHHHHhCC--CCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 012683 133 IGNIELLTYLLSKG--AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209 (458)
Q Consensus 133 ~~~~~~~~~Ll~~~--~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 209 (458)
.|+.+++++|++.| ++++..+..+ ||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 7777666544 99999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCcccc-CCCCcHHHHHHhcCcHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683 210 AG-ANANIV-AGGATPLHIAADIGSTEIIKCLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL 275 (458)
Q Consensus 210 ~g-~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 275 (458)
.| ++++.. ..|.||||+|+..|+.+++++|+ ++|++++.+|..|+||+|+|+.. +++++|+++
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 99 999877 78999999999999999999999 89999999999999999999754 566666653
No 24
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=7.2e-38 Score=296.71 Aligned_cols=252 Identities=26% Similarity=0.314 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
.+.++||.|+..|+.++|++|++. +.+ .+..+..|.||||+|+..|+.+++++|++. |++++..+..|.|
T Consensus 57 ~g~t~L~~A~~~g~~~~v~~Ll~~----g~~-----~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g~t 126 (351)
T 3utm_A 57 RKSTPLHLAAGYNRVRIVQLLLQH----GAD-----VHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFT 126 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHT----TCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHc----CCC-----CCccCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCC
Confidence 356799999999999999999986 333 356788999999999999999999999998 9999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH---------------------HHcCCHHHHHHHHhCCCCC-C
Q 012683 93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS---------------------AGIGNIELLTYLLSKGAEV-D 150 (458)
Q Consensus 93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A---------------------~~~~~~~~~~~Ll~~~~~~-~ 150 (458)
|||+|+..|+.+++++|+++|++++..+..|.||++.| +..++.+.+..++..+... .
T Consensus 127 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (351)
T 3utm_A 127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999998765 4566777777777655433 3
Q ss_pred CCCCCCcHHHHHHhC---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHH
Q 012683 151 SESDAGTPLIWAAGH---GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI 226 (458)
Q Consensus 151 ~~~~~~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~ 226 (458)
....+.||||+|+.. +..+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+
T Consensus 207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~ 286 (351)
T 3utm_A 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR 286 (351)
T ss_dssp CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 334455999999999 5689999999999999999999999999999999999999999999999987 789999999
Q ss_pred HHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 227 A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
|+..|+.++|++|+++|++++.+|..|+||+++| +.+++++|.+....
T Consensus 287 A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 287 AALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM 334 (351)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred HHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence 9999999999999999999999999999999998 78899999877653
No 25
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.7e-38 Score=295.33 Aligned_cols=251 Identities=27% Similarity=0.372 Sum_probs=227.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcH
Q 012683 14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETP 93 (458)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~ 93 (458)
+.++||.||..|+.++|+.|++. |+. .+..+..+.++++.++..+...++..++.. +.+++..+..|.||
T Consensus 59 g~TpLh~A~~~g~~~iv~~Ll~~----ga~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~t~ 128 (337)
T 4g8k_A 59 GWTPLHNAVQMSREDIVELLLRH----GAD-----PVLRKKNGATPFILAAIAGSVKLLKLFLSK-GADVNECDFYGFTA 128 (337)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHT----TCC-----TTCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCBCTTCCBH
T ss_pred CcCHHHHHHHcCCHHHHHHHHHc----CCc-----hhhhccCCCchhHHHHhcccchhhHHhhhc-cchhhhhccCCCCH
Confidence 56899999999999999999987 433 356788999999999999999999999987 99999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-cHHHH
Q 012683 94 LLHAARQGHTETAKYLFEHGANPTIP----------SNLGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIW 161 (458)
Q Consensus 94 L~~A~~~g~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-t~l~~ 161 (458)
||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++ .|++++..+..+ |+++.
T Consensus 129 l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~ 208 (337)
T 4g8k_A 129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 208 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred HHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHH
Confidence 99999999999999999999987654 4568999999999999999999996 699998777655 99988
Q ss_pred HHhCCC----HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCcHHHHHHhcCcHHH
Q 012683 162 AAGHGQ----QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA-GANANIV-AGGATPLHIAADIGSTEI 235 (458)
Q Consensus 162 A~~~~~----~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~-~~g~t~L~~A~~~~~~~i 235 (458)
++..+. ..++++|+++|++++.++..|.||||+|+..|+.++++.|++. |++++.. ..|.||||+|++.|+.++
T Consensus 209 ~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~i 288 (337)
T 4g8k_A 209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 288 (337)
T ss_dssp HHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence 776543 4688999999999999999999999999999999999999985 8899988 789999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683 236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279 (458)
Q Consensus 236 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 279 (458)
|++|+++|++++.+ +|||+|+.+|+.++|++|+++|++.
T Consensus 289 v~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~ 327 (337)
T 4g8k_A 289 AELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKE 327 (337)
T ss_dssp HHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC
T ss_pred HHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCC
Confidence 99999999998765 5999999999999999999999864
No 26
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.6e-38 Score=287.01 Aligned_cols=223 Identities=27% Similarity=0.357 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHcC-------------ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHh
Q 012683 12 RERVQQFLNAACTG-------------NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE 78 (458)
Q Consensus 12 ~~~~~~l~~A~~~g-------------~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~ 78 (458)
..+.++||.|+..| +.+++++|++.. ..+....|..|.||||+|+..|+.+++++|++.
T Consensus 8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g--------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 79 (253)
T 1yyh_A 8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG--------ASLHNQTDRTGETALHLAARYSRSDAAKRLLEA 79 (253)
T ss_dssp ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHcc--------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 46889999999988 899999999872 223345688999999999999999999999998
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-
Q 012683 79 LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG- 156 (458)
Q Consensus 79 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~- 156 (458)
|++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+..|+.+++++|++.|++++..+..+
T Consensus 80 -g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 158 (253)
T 1yyh_A 80 -SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 158 (253)
T ss_dssp -TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred -CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence 99999999999999999999999999999999987 899999999999999999999999999999999998877655
Q ss_pred cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHH
Q 012683 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI 235 (458)
Q Consensus 157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~i 235 (458)
||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|++.|+.++
T Consensus 159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i 238 (253)
T 1yyh_A 159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 238 (253)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 779999999999999999
Q ss_pred HHHHHHcC
Q 012683 236 IKCLLKAG 243 (458)
Q Consensus 236 v~~Ll~~g 243 (458)
+++|....
T Consensus 239 ~~~l~~~~ 246 (253)
T 1yyh_A 239 VRLLDLEH 246 (253)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 99998753
No 27
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.4e-39 Score=297.62 Aligned_cols=245 Identities=29% Similarity=0.332 Sum_probs=209.3
Q ss_pred HHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 012683 20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAAR 99 (458)
Q Consensus 20 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~ 99 (458)
.++..|..+.++.++.........+........+..|.||||.||..|+.++|++|++. |.+++..+..|.||||+|+.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHH
Confidence 46777888888888876444333333333334456788999999999999999999998 99999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhc-
Q 012683 100 QGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH- 177 (458)
Q Consensus 100 ~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~- 177 (458)
.|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..++.++++.++..
T Consensus 83 ~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~ 162 (299)
T 1s70_B 83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162 (299)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998777655 999999999999999877642
Q ss_pred CCC--------------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc
Q 012683 178 HAN--------------------------PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI 230 (458)
Q Consensus 178 ~~~--------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~ 230 (458)
+.+ ....+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~ 242 (299)
T 1s70_B 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242 (299)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred CCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhc
Confidence 332 2234667889999999999999999999999998877 6789999999999
Q ss_pred CcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265 (458)
Q Consensus 231 ~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 265 (458)
|+.+++++|+++|++++.+|..|+||+|+|+....
T Consensus 243 ~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~ 277 (299)
T 1s70_B 243 GKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGG
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999865433
No 28
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.3e-38 Score=280.38 Aligned_cols=212 Identities=29% Similarity=0.380 Sum_probs=195.0
Q ss_pred CCHHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 012683 67 GKTDVCKYLLEELKLDVDTQ-DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK 145 (458)
Q Consensus 67 g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 145 (458)
|+.+++++|++. |.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.
T Consensus 2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 677888899987 8887765 78999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCc
Q 012683 146 GA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGAT 222 (458)
Q Consensus 146 ~~-~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t 222 (458)
+. +++..+..+ ||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.|
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 160 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 160 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC
Confidence 86 666655444 9999999999999999999999999999999999999999999999999999999999988 77999
Q ss_pred HHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683 223 PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279 (458)
Q Consensus 223 ~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 279 (458)
|||+|+..|+.+++++|+++|++++.+|..|+||+|+|+.+++.+++++|++++...
T Consensus 161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999999999999999999999988753
No 29
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.2e-38 Score=283.92 Aligned_cols=226 Identities=25% Similarity=0.339 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
.+.++||.||..|+.++|++|++.+...+..+ +..+..|.||||+|+..|+.+++++|++. |.+++..+..|.|
T Consensus 8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t 81 (241)
T 1k1a_A 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-----DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQT 81 (241)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-----CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----CcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCC
Confidence 35678999999999999999999766545443 56788999999999999999999999997 9999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-C-CCcHHHHHHhCC
Q 012683 93 PLLHAARQGHTETAKYLFEHGA----NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-D-AGTPLIWAAGHG 166 (458)
Q Consensus 93 ~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~-~~t~l~~A~~~~ 166 (458)
|||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++..+ . +.||||+|+..|
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 9999999999999999999987 888899999999999999999999999999999998776 3 449999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCC
Q 012683 167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGA 244 (458)
Q Consensus 167 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~ 244 (458)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.++++.|++.++
T Consensus 162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 999999999999999999999999999999999999999999999999987 779999999999999999999988654
No 30
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.5e-39 Score=293.98 Aligned_cols=237 Identities=17% Similarity=0.142 Sum_probs=210.9
Q ss_pred HHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 012683 21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQ 100 (458)
Q Consensus 21 A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~ 100 (458)
++...+...+..++... ..+..|.+|.||||+|+..|+.+++++|++. |++++.. +|.||||+|+..
T Consensus 6 ~i~~~~~~~v~~lL~~~----------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--~g~t~L~~A~~~ 72 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK----------DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATL 72 (285)
T ss_dssp TGGGCCHHHHHHHHHST----------TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC--TTCCHHHHHTTS
T ss_pred HHHhcCHHHHHHHHHhC----------CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC--CCCCHHHHHHHc
Confidence 45677777777777541 2467889999999999999999999999998 9888887 489999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--cHHHHHHhCCCHHHHHHHHhcC
Q 012683 101 GHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHH 178 (458)
Q Consensus 101 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--t~l~~A~~~~~~~~~~~Ll~~~ 178 (458)
|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|
T Consensus 73 g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 73 EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp SSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred CCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999988766544 9999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcH-HHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcH
Q 012683 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP-LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256 (458)
Q Consensus 179 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~-L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~ 256 (458)
.+.... ..|.||||+|+..|+.+++++|+++|++++.. ..|.|| ||+|+..|+.+++++|+++|++++.+|.
T Consensus 153 ~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~----- 226 (285)
T 3kea_A 153 PSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL----- 226 (285)
T ss_dssp CTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-----
T ss_pred Cccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-----
Confidence 876332 28899999999999999999999999999988 678897 9999999999999999999999999984
Q ss_pred HHHHHHcCCHHHHHhhcCCCCC
Q 012683 257 IQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 257 l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
.|+..|+.+++++|++++..
T Consensus 227 --~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 227 --ENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp --GGGTTTCHHHHHHHHHHHHH
T ss_pred --hhhhcCCHHHHHHHHHcCCC
Confidence 56789999999999988754
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-39 Score=290.41 Aligned_cols=232 Identities=24% Similarity=0.357 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHH-HHHHHHHhCCCCCCCCCCCCC
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD-VCKYLLEELKLDVDTQDEDGE 91 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~-~v~~ll~~~~~~~~~~~~~g~ 91 (458)
...++|+.||..|++++|++|++...+.... .....+..+..|.||||.|+..++.. ++++|++. |++++..|.+|.
T Consensus 10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~ 87 (269)
T 4b93_B 10 REVEKLLRAVADGDLEMVRYLLEWTEEDLED-AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGS 87 (269)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------C-CCCTTCCCTTSC
T ss_pred cchhHHHHHHHcCCHHHHHHHHHCCCccccc-ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCC
Confidence 4578999999999999999999763221111 12234556788999999999988865 78888887 999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHH
Q 012683 92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA 170 (458)
Q Consensus 92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~ 170 (458)
||||+|+..|+.++|++|++.|++++..+..|.||++.|+..++.+++++|++.|++++..+..+ ||||+|+..|+.++
T Consensus 88 TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~ 167 (269)
T 4b93_B 88 SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHEL 167 (269)
T ss_dssp CHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGG
T ss_pred CHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877665 99999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCc-HHHHHHHHHcCCCC
Q 012683 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGS-TEIIKCLLKAGADP 246 (458)
Q Consensus 171 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~-~~iv~~Ll~~g~~~ 246 (458)
+++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|+||||+|+++++ .+++++|...+..+
T Consensus 168 v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 168 VALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL 245 (269)
T ss_dssp HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred HHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence 99999999999999999999999999999999999999999999988 789999999998886 35555555555443
No 32
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3e-37 Score=283.32 Aligned_cols=233 Identities=23% Similarity=0.267 Sum_probs=182.4
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cH
Q 012683 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGAN---PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TP 158 (458)
Q Consensus 83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~ 158 (458)
++.+|..|.||||+|+..|+.++|++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++..+..+ ||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 467889999999999999999999999999988 78889999999999999999999999999999998777555 99
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCCC-------------CCCCCcHHHHHHHcCCH-HHHHHHHHcCCCcccc-CCCCcH
Q 012683 159 LIWAAGHGQQEAVKVLLEHHANPNAE-------------TEDNITPLLSAVAAGSL-TCLDLLIQAGANANIV-AGGATP 223 (458)
Q Consensus 159 l~~A~~~~~~~~~~~Ll~~~~~~~~~-------------~~~~~t~l~~a~~~~~~-~~~~~Ll~~g~~~~~~-~~g~t~ 223 (458)
||+|+..|+.+++++|+++|.+.... ...+.++++.+...+.. .....+...+.+++.. ..|.||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 99999999999999999988764322 22345566665554433 3334444556677766 679999
Q ss_pred HHHHHhcCcHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchh
Q 012683 224 LHIAADIGSTEIIKCLLKAGADPNVTDED-GQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQL 302 (458)
Q Consensus 224 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (458)
||+|+..|+.++|++|+++|++++.++.. |+||||+|+..|+.+++++|++++.. ++..+..+.+++.+ +......
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~--A~~~~~~ 238 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGS--ALLRPNP 238 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH--HHTSSCH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHH--HHHcCCc
Confidence 99999999999999999999999999865 99999999999999999999999764 34444455555544 4555778
Q ss_pred HHhhhhhcCCCCCCCC
Q 012683 303 EETRNLKENNAPKDKA 318 (458)
Q Consensus 303 ~~~~~l~~~~~~~~~~ 318 (458)
+.++.|++.++.+...
T Consensus 239 ~~v~~Ll~~ga~~~~~ 254 (282)
T 1oy3_D 239 ILARLLRAHGAPEPED 254 (282)
T ss_dssp HHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHcCCCcCcC
Confidence 9999999999987644
No 33
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3e-36 Score=269.34 Aligned_cols=222 Identities=26% Similarity=0.364 Sum_probs=200.1
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHH
Q 012683 81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPL 159 (458)
Q Consensus 81 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l 159 (458)
.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ |||
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 81 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 4677889999999999999999999999999999999999999999999999999999999999999998776555 999
Q ss_pred HHHHhCCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHH
Q 012683 160 IWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK 237 (458)
Q Consensus 160 ~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~ 237 (458)
|+|+..|+.+++++|++.| .+++..+..|.||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.++++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999999998 889999999999999999999999999999999999987 77999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHh
Q 012683 238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEET 305 (458)
Q Consensus 238 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (458)
+|+++|++++.+|..|+||||+|+..|+.+++++|++++.+. +..+..+.+++.+ +.........
T Consensus 162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~--A~~~~~~~~~ 226 (237)
T 3b7b_A 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQC--ASLNSQVWSA 226 (237)
T ss_dssp HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHH--SCTTCHHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC-CccCCCCCCHHHH--HHHHHHHHHH
Confidence 999999999999999999999999999999999999987643 4444455555544 4444444333
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.5e-37 Score=272.04 Aligned_cols=214 Identities=28% Similarity=0.345 Sum_probs=195.1
Q ss_pred CChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683 25 GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTE 104 (458)
Q Consensus 25 g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~ 104 (458)
|+.+++++|++. +.. +....|.+|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+
T Consensus 2 g~~~~i~~Ll~~----g~~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~ 72 (223)
T 2f8y_A 2 DAPAVISDFIYQ----GAS----LHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQG 72 (223)
T ss_dssp ---CCEETTEET----TCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHc----CCC----cccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 566777777765 222 2344578999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCC
Q 012683 105 TAKYLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN 182 (458)
Q Consensus 105 ~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~ 182 (458)
++++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++
T Consensus 73 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 152 (223)
T 2f8y_A 73 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 152 (223)
T ss_dssp HHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999987 889999999999999999999999999999999998877655 99999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q 012683 183 AETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN 247 (458)
Q Consensus 183 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~ 247 (458)
..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|+...
T Consensus 153 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999987 779999999999999999999999998654
No 35
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2e-36 Score=268.75 Aligned_cols=215 Identities=24% Similarity=0.345 Sum_probs=196.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCC-CCCCCC
Q 012683 15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK--LDVDT-QDEDGE 91 (458)
Q Consensus 15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~--~~~~~-~~~~g~ 91 (458)
.++||.||..|+.++|++|++.. +......+..|.||||+|+..|+.+++++|++. + .+++. .+..|.
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~ 73 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSK--------PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGW 73 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHC--------GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGCCCTTSC
T ss_pred ccHHHHHHHhCCHHHHHHHHhcC--------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccccCCCCCC
Confidence 46899999999999999999872 334455788999999999999999999999998 7 56666 788999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCH
Q 012683 92 TPLLHAARQGHTETAKYLFEHG--ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168 (458)
Q Consensus 92 t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~ 168 (458)
||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.
T Consensus 74 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 153 (228)
T 2dzn_A 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153 (228)
T ss_dssp CHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence 9999999999999999999999 8889999999999999999999999999999999998877655 999999999999
Q ss_pred HHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHH
Q 012683 169 EAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLK 241 (458)
Q Consensus 169 ~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~ 241 (458)
+++++|++.| .+++..+..|.||||+|+..|+.+++++|+ +.|++++.. ..|.||||+|+.. +++++|++
T Consensus 154 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 9999999999 999999999999999999999999999999 999999988 7899999999765 56677765
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.3e-37 Score=281.18 Aligned_cols=236 Identities=19% Similarity=0.187 Sum_probs=205.5
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 012683 66 EGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK 145 (458)
Q Consensus 66 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 145 (458)
..+...+..++.. + +++.+|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|++.
T Consensus 9 ~~~~~~v~~lL~~-~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 9 TWKSKQLKSFLSS-K-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp GCCHHHHHHHHHS-T-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHHHh-C-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHC
Confidence 3444444455544 2 688999999999999999999999999999999998874 99999999999999999999999
Q ss_pred CCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcH
Q 012683 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATP 223 (458)
Q Consensus 146 ~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~ 223 (458)
|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|++......|.||
T Consensus 85 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~ 164 (285)
T 3kea_A 85 GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC 164 (285)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHH
T ss_pred CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccH
Confidence 99998777655 99999999999999999999999999999999 79999999999999999999999988544579999
Q ss_pred HHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcH-HHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchh
Q 012683 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP-IQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQL 302 (458)
Q Consensus 224 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (458)
||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..|+.+++++|++++........ .+......
T Consensus 165 L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~----------~a~~~~~~ 234 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL----------ENVLLDDA 234 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG----------GGGTTTCH
T ss_pred HHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh----------hhhhcCCH
Confidence 999999999999999999999999999999998 9999999999999999999875433321 11234566
Q ss_pred HHhhhhhcCCCCC
Q 012683 303 EETRNLKENNAPK 315 (458)
Q Consensus 303 ~~~~~l~~~~~~~ 315 (458)
+.++.+++.+...
T Consensus 235 ~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 235 EIAKMIIEKHVEY 247 (285)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCC
Confidence 6777777766544
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=267.50 Aligned_cols=225 Identities=28% Similarity=0.439 Sum_probs=201.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCc
Q 012683 14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD-EDGET 92 (458)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t 92 (458)
+.++|+.|+..|+.+++++|++. +.+ .+..+..|.||||+|+..|+.+++++|++. +.+++... ..|.|
T Consensus 9 ~~~~l~~A~~~g~~~~~~~Ll~~----g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t 78 (240)
T 3eu9_A 9 STWDIVKATQYGIYERCRELVEA----GYD-----VRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNST 78 (240)
T ss_dssp GGCCHHHHHHTTCHHHHHHHHHT----TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBC
T ss_pred cchHHHHHHHcCChHHHHHHHHc----CCC-----cCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCC
Confidence 34569999999999999999986 222 355678899999999999999999999998 77776554 55999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCC-HHH
Q 012683 93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ-QEA 170 (458)
Q Consensus 93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~-~~~ 170 (458)
|||+|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|++.|++++..+..+ ||||+|+..++ .++
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~ 158 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred hhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999998777655 99999996665 899
Q ss_pred HHHHHhcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q 012683 171 VKVLLEHHANPNAETE-DNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNV 248 (458)
Q Consensus 171 ~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~ 248 (458)
+++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|.+...
T Consensus 159 ~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 9999999999999987 8999999999999999999999999999988 7899999999999999999999999876543
No 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.6e-35 Score=263.69 Aligned_cols=208 Identities=27% Similarity=0.272 Sum_probs=178.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCCcHHHH
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP-----TIPSNLGATALHH 129 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~g~t~L~~ 129 (458)
.|.||||+|+..|+.+++++|++..|.+++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 58899999999999999999998779999999999999999999999999999999999876 6677889999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 012683 130 SAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209 (458)
Q Consensus 130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 209 (458)
|+..|+.+++++|++.|++++..+... .+ ....+..+..|.||||+|+..|+.+++++|++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~-~~------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 142 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGS-VF------------------HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSG-GG------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCc-ce------------------eecccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999887655431 11 12345567788999999999999999999999
Q ss_pred cCCCcccc-CCCCcHHHHHHhcCcHHHH----HHHHHcCCCC------CCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 210 AGANANIV-AGGATPLHIAADIGSTEII----KCLLKAGADP------NVTDEDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 210 ~g~~~~~~-~~g~t~L~~A~~~~~~~iv----~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
+|++++.. ..|.||||+|+..|+.+++ ++|+++|+++ +.+|..|+||||+|+..|+.+++++|++++..
T Consensus 143 ~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 143 HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 99998877 6789999999999998888 8999999887 58889999999999999999999999988765
Q ss_pred CCC
Q 012683 279 DPS 281 (458)
Q Consensus 279 ~~~ 281 (458)
...
T Consensus 223 ~~~ 225 (232)
T 2rfa_A 223 IAA 225 (232)
T ss_dssp C--
T ss_pred chh
Confidence 433
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.2e-37 Score=275.49 Aligned_cols=201 Identities=25% Similarity=0.301 Sum_probs=136.9
Q ss_pred hcccCCCcHHHHHHHcCCHHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 012683 51 IKDANKRGALHFAAREGKTDVCKYLLEELK---LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127 (458)
Q Consensus 51 ~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 127 (458)
..|.+|.||||+|+..|+.+++++|++... .+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 457789999999999999999999987632 36888999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 012683 128 HHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207 (458)
Q Consensus 128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L 207 (458)
|+|+..|+.+++++|++.+.+.... ..++..+..|.||||+|+..|+.+++++|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~--------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 136 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLH--------------------------SILKATNYNGHTCLHLASIHGYLGIVELL 136 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSS--------------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcccchhHH--------------------------HHhhccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999999999988653211 01123344455555555555555555555
Q ss_pred HHcCCCcccc-C-CCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683 208 IQAGANANIV-A-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS 277 (458)
Q Consensus 208 l~~g~~~~~~-~-~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 277 (458)
+++|++++.. . .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|++++.
T Consensus 137 l~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga 208 (236)
T 1ikn_D 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208 (236)
T ss_dssp HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred HHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence 5555555544 2 45555555555555555555555555555555555555555555555555555555554
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.3e-35 Score=261.73 Aligned_cols=207 Identities=23% Similarity=0.289 Sum_probs=157.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-----CCCC-CCCcHHHH
Q 012683 89 DGETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV-----DSES-DAGTPLIW 161 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~-----~~~~-~~~t~l~~ 161 (458)
.|+||||.|+..|+.+++++|++. |++++..|..|.||||+|+..|+.+++++|++.|+++ +..+ .+.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 578999999999999999999987 8999999999999999999999999999999888765 2222 23366666
Q ss_pred HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHH
Q 012683 162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLL 240 (458)
Q Consensus 162 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll 240 (458)
|+..|+.+++++|+++|++++..+.... +. ...+.. ..|.||||+|+..|+.+++++|+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--~~------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 141 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSV--FH------------------YRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGG--GS------------------CCTTCSCCCCSSHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcc--ee------------------ecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 6666666666666666666655443211 00 011111 36999999999999999999999
Q ss_pred HcCCCCCCCCCCCCcHHHHHHHcCCHHHH----HhhcCCCCCCC-----CCCCcchhhHHHHHHhhccchhHHhhhhhcC
Q 012683 241 KAGADPNVTDEDGQKPIQVAAARGNREAV----EILFPLTSEDP-----SIPKWTVDGILEYMQSESGKQLEETRNLKEN 311 (458)
Q Consensus 241 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~v----~~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (458)
++|++++.+|..|+||||+|+..|+.+++ ++|++++.... +..+....+++.+ +......+.++.+++.
T Consensus 142 ~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~--A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 142 EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL--AGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHH--HHHHTCHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHH--HHHcCCHHHHHHHHhc
Confidence 99999999999999999999999999988 99999988654 3444555555554 4455678888888888
Q ss_pred CCCCCC
Q 012683 312 NAPKDK 317 (458)
Q Consensus 312 ~~~~~~ 317 (458)
+.....
T Consensus 220 g~~~~~ 225 (232)
T 2rfa_A 220 RKHIAA 225 (232)
T ss_dssp HHHC--
T ss_pred Cccchh
Confidence 765543
No 41
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4e-34 Score=248.78 Aligned_cols=191 Identities=27% Similarity=0.413 Sum_probs=141.6
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683 54 ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133 (458)
Q Consensus 54 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 133 (458)
..+.||||.|+..|+.++++.|+...+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 45778888888888888888888876668888888888888888888888888888888888888888888888888777
Q ss_pred CCHHHHHHHHh-CCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-
Q 012683 134 GNIELLTYLLS-KGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG- 211 (458)
Q Consensus 134 ~~~~~~~~Ll~-~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g- 211 (458)
|+.+++++|++ .+.+ ++..+..|.||||+|+..|+.+++++|+++|
T Consensus 83 ~~~~~~~~Ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 130 (201)
T 3hra_A 83 GRTEILAYMLKHATPD--------------------------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130 (201)
T ss_dssp TCHHHHHHHHHHSCCC--------------------------------TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHhccCcc--------------------------------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 77777777773 3333 4444555555555555555555566666555
Q ss_pred CCcccc-CCCCcHHHHHHhcCc-----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 212 ANANIV-AGGATPLHIAADIGS-----TEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 212 ~~~~~~-~~g~t~L~~A~~~~~-----~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
++++.. ..|.||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 131 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 555554 446666666666665 77777888777777777778888888888888888888877654
No 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=5.8e-34 Score=247.72 Aligned_cols=188 Identities=23% Similarity=0.283 Sum_probs=144.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 122 LGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199 (458)
Q Consensus 122 ~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~ 199 (458)
.+.||||.|+..|+.++++.|+..+. +++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 45556666666666666666655544 454444333 6666677777777777777777788888888999999999999
Q ss_pred CHHHHHHHH-HcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCC-----HHHHHh
Q 012683 200 SLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAG-ADPNVTDEDGQKPIQVAAARGN-----REAVEI 271 (458)
Q Consensus 200 ~~~~~~~Ll-~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~-----~~~v~~ 271 (458)
+.+++++|+ ..+.+++.. ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++ .+++++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 999999999 556688777 67999999999999999999999999 9999999999999999999998 999999
Q ss_pred hcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCC
Q 012683 272 LFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENN 312 (458)
Q Consensus 272 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (458)
|++++... +..+....+++.++. .....+.++.+++.|
T Consensus 164 Ll~~ga~~-~~~~~~g~t~l~~A~--~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 164 LMENGADQ-SIKDNSGRTAMDYAN--QKGYTEISKILAQYN 201 (201)
T ss_dssp HHHTTCCT-TCCCTTSCCHHHHHH--HHTCHHHHHHHHTCC
T ss_pred HHHCCCCC-CccCCCCCCHHHHHH--HcCCHhHHHHHHhcC
Confidence 99997543 444455555555544 446677777777653
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.1e-35 Score=265.58 Aligned_cols=196 Identities=21% Similarity=0.226 Sum_probs=136.7
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHH
Q 012683 86 QDEDGETPLLHAARQGHTETAKYLFEHGA----NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIW 161 (458)
Q Consensus 86 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~ 161 (458)
.|..|.||||+|+..|+.+++++|++.+. +++..+..|.||| |+
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L--------------------------------~~ 51 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL--------------------------------HL 51 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHH--------------------------------HH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHH--------------------------------HH
Confidence 44556666666666666666665555443 3444444455555 55
Q ss_pred HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc------ccc-CCCCcHHHHHHhcCcHH
Q 012683 162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA------NIV-AGGATPLHIAADIGSTE 234 (458)
Q Consensus 162 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~------~~~-~~g~t~L~~A~~~~~~~ 234 (458)
|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++. +.. ..|.||||+|+..|+.+
T Consensus 52 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 131 (236)
T 1ikn_D 52 AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131 (236)
T ss_dssp HHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHH
Confidence 55555555555555555566666666777777777777777777777776542 333 56999999999999999
Q ss_pred HHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCC
Q 012683 235 IIKCLLKAGADPNVTDE-DGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNA 313 (458)
Q Consensus 235 iv~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (458)
+|++|+++|++++.++. .|+||||+|+..|+.+++++|++++... +..+..+ .+++..+......+.++.+++.++
T Consensus 132 ~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g--~tpl~~A~~~~~~~~~~~Ll~~ga 208 (236)
T 1ikn_D 132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQG--YSPYQLTWGRPSTRIQQQLGQLTL 208 (236)
T ss_dssp HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTC--CCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccCCC--CCHHHHHHccCchHHHHHHHHcch
Confidence 99999999999999998 9999999999999999999999997643 3333333 444555566678899999999988
Q ss_pred CCC
Q 012683 314 PKD 316 (458)
Q Consensus 314 ~~~ 316 (458)
...
T Consensus 209 ~~~ 211 (236)
T 1ikn_D 209 ENL 211 (236)
T ss_dssp GGG
T ss_pred hhh
Confidence 543
No 44
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.9e-34 Score=264.23 Aligned_cols=219 Identities=25% Similarity=0.366 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET 92 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t 92 (458)
.+.++|+.||..|++++|++|++. +.+ .+..+.+|.||||+|+..|+.+++++|++. |++++..+..|.|
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~----g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t 108 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLER----GAD-----INYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWI 108 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH----CCC-----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHc----CCC-----CcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCc
Confidence 467889999999999999999987 333 356788999999999999999999999997 9999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCC---------------------
Q 012683 93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK-GAEVD--------------------- 150 (458)
Q Consensus 93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~--------------------- 150 (458)
|||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++++.. +.+++
T Consensus 109 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (299)
T 1s70_B 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188 (299)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998877653 33221
Q ss_pred ------CCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcH
Q 012683 151 ------SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP 223 (458)
Q Consensus 151 ------~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~ 223 (458)
....+.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.. ..|.||
T Consensus 189 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~ 268 (299)
T 1s70_B 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268 (299)
T ss_dssp CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 2234559999999999999999999999999999999999999999999999999999999999988 789999
Q ss_pred HHHHHhcCcHHHHHHHHHc
Q 012683 224 LHIAADIGSTEIIKCLLKA 242 (458)
Q Consensus 224 L~~A~~~~~~~iv~~Ll~~ 242 (458)
||+|++. ..++++.|++.
T Consensus 269 l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 269 FDVADED-ILGYLEELQKK 286 (299)
T ss_dssp TTSCCSG-GGHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHH
Confidence 9999775 45555566553
No 45
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.1e-34 Score=264.89 Aligned_cols=216 Identities=22% Similarity=0.283 Sum_probs=140.3
Q ss_pred hhcccCCCcHHHHHHHcCCHHHHHHHHHh---CCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCC--
Q 012683 50 DIKDANKRGALHFAAREGKTDVCKYLLEE---LKLDVD----TQDEDGETPLLHAARQ---GHTETAKYLFEHGANPT-- 117 (458)
Q Consensus 50 ~~~~~~g~t~L~~A~~~g~~~~v~~ll~~---~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~-- 117 (458)
+..|..|.||||+|+..|+.++|+.|++. .+.+++ ..+..|.||||+|+.. |+.+++++|++.|+++.
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 45678899999999999999999988873 366665 4578999999999987 99999999999876432
Q ss_pred ---------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 012683 118 ---------IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDN 188 (458)
Q Consensus 118 ---------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 188 (458)
..|..|.||||+|+..|+.+++++|++.|++++..+..+. ....+....+..|
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~------------------~~~~~~~~~~~~g 148 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF------------------FKKTKGRPGFYFG 148 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG------------------GSSCSSSCCCCSC
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc------------------cccccccccccCC
Confidence 2455777888888877777777777777777766554210 0000112223356
Q ss_pred CcHHHHHHHcCCHHHHHHHHH---cCCCcccc-CCCCcHHHHHHhcCc---------HHHHHHHHHcCCCCC-------C
Q 012683 189 ITPLLSAVAAGSLTCLDLLIQ---AGANANIV-AGGATPLHIAADIGS---------TEIIKCLLKAGADPN-------V 248 (458)
Q Consensus 189 ~t~l~~a~~~~~~~~~~~Ll~---~g~~~~~~-~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~~~~-------~ 248 (458)
.||||+|+..|+.+++++|++ .|++++.. ..|.||||+|+..|+ .+++++|+++|++++ .
T Consensus 149 ~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~ 228 (273)
T 2pnn_A 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEI 228 (273)
T ss_dssp BSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGC
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 666666666666666666666 56666655 456666666666555 566666666666654 3
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCC
Q 012683 249 TDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIP 283 (458)
Q Consensus 249 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~ 283 (458)
+|..|+||||+|+..|+.+++++|++++..++..+
T Consensus 229 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~ 263 (273)
T 2pnn_A 229 TNRKGLTPLALAASSGKIGVLAYILQREIHEPECR 263 (273)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-----
T ss_pred cCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhh
Confidence 66666666666666666666666666666554443
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=4.6e-34 Score=258.28 Aligned_cols=204 Identities=20% Similarity=0.240 Sum_probs=156.9
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHhCCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCC----
Q 012683 55 NKRGALHFAAREGKTD----VCKYLLEELKLDVDT----QDEDGETPLLHAARQ---GHTETAKYLFEHGANPTIP---- 119 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~----~v~~ll~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~---- 119 (458)
.|.||||.|+..|+.+ ++++|++. |.+++. .+..|.||||+|+.. |+.+++++|++.|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 3789999999999997 55666666 888888 788999999999998 9999999999988776533
Q ss_pred -------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 012683 120 -------SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192 (458)
Q Consensus 120 -------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l 192 (458)
|..|.||||+|+..|+.+++++|++.|++++..+.... ...+.+..+..|.|||
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~-------------------~~~~~~~~~~~g~tpL 140 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF-------------------FQKHQGTCFYFGELPL 140 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG-------------------GSCCSSSCCCSCSSHH
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc-------------------ccccccccccCCCCHH
Confidence 35677777777777777777777777777765554311 0112223334478888
Q ss_pred HHHHHcCCHHHHHHHHH---cCCCcccc-CCCCcHHHHHHh--cCcHH-------HHHHHHHcCCCC-------CCCCCC
Q 012683 193 LSAVAAGSLTCLDLLIQ---AGANANIV-AGGATPLHIAAD--IGSTE-------IIKCLLKAGADP-------NVTDED 252 (458)
Q Consensus 193 ~~a~~~~~~~~~~~Ll~---~g~~~~~~-~~g~t~L~~A~~--~~~~~-------iv~~Ll~~g~~~-------~~~~~~ 252 (458)
|+|+..|+.+++++|++ .|++++.. ..|.||||+|+. .++.+ ++++|+++|+++ +.+|..
T Consensus 141 ~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~ 220 (256)
T 2etb_A 141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ 220 (256)
T ss_dssp HHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTT
T ss_pred HHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCC
Confidence 88888888888888888 78887776 668888888887 67777 888888888888 888888
Q ss_pred CCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 253 GQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 253 g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
|+||||+|+..|+.+++++|++++..
T Consensus 221 g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 221 GLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 88899888888888888888887654
No 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=7e-35 Score=272.90 Aligned_cols=231 Identities=23% Similarity=0.272 Sum_probs=176.4
Q ss_pred CChHHHHHHHHHhhhcCCCchhhhhh--------hcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCC-CCCCCCcHHH
Q 012683 25 GNLDLLKKIAKQLDDQGKGLSKTVAD--------IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDT-QDEDGETPLL 95 (458)
Q Consensus 25 g~~~~v~~ll~~~~~~~~~~~~~~~~--------~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~ 95 (458)
|+.++|+.|++...+.+......... .......+.+|.|+..+..+++++|++. |++++. .+..|.||||
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-g~dvn~~~d~~g~TpLh 136 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLNLNIPVDEHGNTPLH 136 (327)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS-CCCSCSCCSTTCCCHHH
T ss_pred chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc-CCCcccccCCCCCcHHH
Confidence 99999999998864422210000000 0111222346888888888999999987 999999 8999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHhCC-CCCCCCCCCC-cHHHHHHh----CC
Q 012683 96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN---IELLTYLLSKG-AEVDSESDAG-TPLIWAAG----HG 166 (458)
Q Consensus 96 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~~-~~~~~~~~~~-t~l~~A~~----~~ 166 (458)
+|+..|+.++|++|+++|++++..+..|.||||+|+..|+ .++++.|++.+ .+++..+..+ ||||+|+. .|
T Consensus 137 ~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g 216 (327)
T 1sw6_A 137 WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 216 (327)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccc
Confidence 9999999999999999999999999999999999999998 67777777775 5566655544 99999999 99
Q ss_pred CHHHHHHHHhc--------------------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHH
Q 012683 167 QQEAVKVLLEH--------------------HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLH 225 (458)
Q Consensus 167 ~~~~~~~Ll~~--------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~ 225 (458)
+.+++++|++. |++++..+..|.||||.|+. +++|++++ ++.. ..|+||||
T Consensus 217 ~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~--~n~~d~~G~TpLh 288 (327)
T 1sw6_A 217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM--LNAQDSNGDTCLN 288 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHT--TTCCCTTSCCHHH
T ss_pred cHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC--CCCCCCCCCCHHH
Confidence 99999999987 89999999999999999985 89999984 5555 67999999
Q ss_pred HHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264 (458)
Q Consensus 226 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 264 (458)
+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|
T Consensus 289 ~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 999999999999999999999999999999999998764
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.4e-34 Score=260.17 Aligned_cols=203 Identities=21% Similarity=0.224 Sum_probs=154.1
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCc
Q 012683 89 DGETPLLHAARQGHTE----TAKYLFEHGANPTI----PSNLGATALHHSAGI---GNIELLTYLLSKGAEVDSESDAGT 157 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~t 157 (458)
.|.||||.|+..|+.+ ++++|++.|++++. .+..|.||||+|+.. |+.+++++|++.|++++....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~--- 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP--- 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC---
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh---
Confidence 4789999999999986 56777778999887 788999999999988 889999999988776543220
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCC--------------CCcH
Q 012683 158 PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG--------------GATP 223 (458)
Q Consensus 158 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------------g~t~ 223 (458)
++. ......+..|.||||+|+..|+.+++++|+++|++++..+. |.||
T Consensus 78 ----------------~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tp 139 (256)
T 2etb_A 78 ----------------LVN--AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139 (256)
T ss_dssp ----------------GGG--CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSH
T ss_pred ----------------hcc--cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCH
Confidence 000 11222344566666666666666666666666666665522 9999
Q ss_pred HHHHHhcCcHHHHHHHHH---cCCCCCCCCCCCCcHHHHHHH--cCCHH-------HHHhhcCCCCCCC------CCCCc
Q 012683 224 LHIAADIGSTEIIKCLLK---AGADPNVTDEDGQKPIQVAAA--RGNRE-------AVEILFPLTSEDP------SIPKW 285 (458)
Q Consensus 224 L~~A~~~~~~~iv~~Ll~---~g~~~~~~~~~g~t~l~~A~~--~~~~~-------~v~~Ll~~~~~~~------~~~~~ 285 (458)
||+|+..|+.++|++|++ +|++++.+|..|+||||+|+. .++.+ ++++|++++.... +..+.
T Consensus 140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~ 219 (256)
T 2etb_A 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT
T ss_pred HHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCC
Confidence 999999999999999999 999999999999999999999 88988 9999999887542 34444
Q ss_pred chhhHHHHHHhhccchhHHhhhhhcCCCC
Q 012683 286 TVDGILEYMQSESGKQLEETRNLKENNAP 314 (458)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (458)
.+.+++.+ +......+.++.+++.+..
T Consensus 220 ~g~tpL~~--A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 220 QGLTPLKL--AAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp TSCCHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHH--HHHhCCHHHHHHHHhCCCC
Confidence 45555544 4555678888888887654
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.8e-34 Score=262.28 Aligned_cols=211 Identities=18% Similarity=0.189 Sum_probs=158.5
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCC
Q 012683 80 KLDVDTQDEDGETPLLHAARQGHTETAKYLFE----HGANPT----IPSNLGATALHHSAGI---GNIELLTYLLSKGAE 148 (458)
Q Consensus 80 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~----~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~ 148 (458)
++..+..+..|.||||.|+..|+.++|+.|++ .+.+++ ..+..|.||||+|+.. |+.+++++|++.|++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 34456678889999999999999998888876 455554 3577889999999976 888899988887754
Q ss_pred CCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccC----------
Q 012683 149 VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA---------- 218 (458)
Q Consensus 149 ~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~---------- 218 (458)
... ++.++.. .....+..|.||||+|+..|+.+++++|+++|++++...
T Consensus 83 ~~~-------------------~~~~i~~--~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~ 141 (273)
T 2pnn_A 83 TDS-------------------LKQFVNA--SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKG 141 (273)
T ss_dssp TTC-------------------HHHHHTC--CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSS
T ss_pred ccc-------------------hhHHhhc--ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccc
Confidence 321 1122221 223345677788888888888888888888877777663
Q ss_pred -----CCCcHHHHHHhcCcHHHHHHHHH---cCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHhhcCCCCCCCC
Q 012683 219 -----GGATPLHIAADIGSTEIIKCLLK---AGADPNVTDEDGQKPIQVAAARGN---------REAVEILFPLTSEDPS 281 (458)
Q Consensus 219 -----~g~t~L~~A~~~~~~~iv~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~---------~~~v~~Ll~~~~~~~~ 281 (458)
.|.||||+|+..|+.++|++|++ +|++++.+|..|+||||+|+..|+ .+++++|++++.....
T Consensus 142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~ 221 (273)
T 2pnn_A 142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221 (273)
T ss_dssp SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence 59999999999999999999999 999999999999999999999998 8999999998875432
Q ss_pred ------CCCcchhhHHHHHHhhccchhHHhhhhhcCCC
Q 012683 282 ------IPKWTVDGILEYMQSESGKQLEETRNLKENNA 313 (458)
Q Consensus 282 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (458)
..+..+.+++ ..+......+.++.|++.++
T Consensus 222 ~~~~~~~~d~~g~TpL--~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 222 TLKLEEITNRKGLTPL--ALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp TCCGGGCCCTTSCCHH--HHHHHTTCHHHHHHHHHHHT
T ss_pred ccccccccCCCCCCHH--HHHHHhChHHHHHHHHHCCC
Confidence 3444454554 44555577999999999988
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=9e-33 Score=231.79 Aligned_cols=157 Identities=39% Similarity=0.553 Sum_probs=89.4
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683 58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137 (458)
Q Consensus 58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~ 137 (458)
++|+.||..|+.++|+.|++. |++++.+|..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 356666666666666666665 6666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 012683 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN 215 (458)
Q Consensus 138 ~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 215 (458)
++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..|.+|+|||++|+..|+.+++++|+++|++++
T Consensus 85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 85 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 6666655555555444333 55555555555555555555555555555555555555555555555555554444443
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.2e-32 Score=231.04 Aligned_cols=158 Identities=38% Similarity=0.566 Sum_probs=146.6
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHH
Q 012683 92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA 170 (458)
Q Consensus 92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~ 170 (458)
++|+.|+..|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++..+..+ ||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 57999999999999999999999999999999999999999999999999999999998877665 99999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q 012683 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVT 249 (458)
Q Consensus 171 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~ 249 (458)
+++|+++|++++.++.+|+||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++..
T Consensus 86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~ 165 (169)
T 4gpm_A 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHH 165 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCC
Confidence 99999999999999999999999999999999999999999999988 78999999999999999999999999998754
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=3.7e-33 Score=252.93 Aligned_cols=207 Identities=21% Similarity=0.206 Sum_probs=146.7
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHH----hCCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCC------
Q 012683 53 DANKRGALHFAAREGKTDVCKYLLE----ELKLDVDTQD----EDGETPLLHAA---RQGHTETAKYLFEHGAN------ 115 (458)
Q Consensus 53 ~~~g~t~L~~A~~~g~~~~v~~ll~----~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~------ 115 (458)
+..+.|+||.|+..|+.++++.|++ . +.+++..+ ..|.||||+|+ ..|+.+++++|++.|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 3567889999999999885555544 5 77777655 66889999888 66888999999887744
Q ss_pred -----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCc
Q 012683 116 -----PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNIT 190 (458)
Q Consensus 116 -----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t 190 (458)
++..|..|.||||+|+..|+.+++++|++.|++++..+.+.. -...+....+..|.|
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~------------------~~~~~~~~~~~~g~t 142 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF------------------FQPKDEGGYFYFGEL 142 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECC------------------CSSSCCCCSCCSCSS
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccc------------------cCcccccccccCCCC
Confidence 233344566666666666666666666666666655442100 000111222256777
Q ss_pred HHHHHHHcCCHHHHHHHHH---cCCCcccc-CCCCcHHHHHHhcCc---------HHHHHHHHHcCCCC-------CCCC
Q 012683 191 PLLSAVAAGSLTCLDLLIQ---AGANANIV-AGGATPLHIAADIGS---------TEIIKCLLKAGADP-------NVTD 250 (458)
Q Consensus 191 ~l~~a~~~~~~~~~~~Ll~---~g~~~~~~-~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~~~-------~~~~ 250 (458)
|||+|+..|+.+++++|++ .|++++.. ..|.||||+|+..|+ .+++++|+++|+++ +.+|
T Consensus 143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d 222 (260)
T 3jxi_A 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN 222 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc
Confidence 8888877777888888887 77777766 567888888887766 68888888888877 6688
Q ss_pred CCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 251 EDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 251 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
..|+||||+|+..|+.+++++|++++..
T Consensus 223 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 223 NDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 8888888888888888888888877654
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=2e-32 Score=248.02 Aligned_cols=173 Identities=22% Similarity=0.219 Sum_probs=118.9
Q ss_pred ccCCCcHHHHHH---HcCCHHHHHHHHHhCC-----------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 012683 53 DANKRGALHFAA---REGKTDVCKYLLEELK-----------LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118 (458)
Q Consensus 53 ~~~g~t~L~~A~---~~g~~~~v~~ll~~~~-----------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 118 (458)
+..|.||||+|+ ..|+.+++++|++. | ..++..|..|.||||+|+..|+.++|++|+++|++++.
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 121 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA 121 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc
Confidence 366999999999 77999999999997 4 34555666899999999999999999999999999998
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCcHHHHHHhCCCHHHHHHHHh---cCCCCCCCCCCCCcHHHH
Q 012683 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLE---HHANPNAETEDNITPLLS 194 (458)
Q Consensus 119 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~l~~ 194 (458)
.+..+.. ...+.... ..+.||||+|+..|+.+++++|++ +|++++..+..|+||||+
T Consensus 122 ~~~~~~~-------------------~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~ 182 (260)
T 3jxi_A 122 QARGRFF-------------------QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHA 182 (260)
T ss_dssp CCEECCC-------------------SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred ccccccc-------------------CcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHH
Confidence 8732100 00001111 122355555555555555555655 566666666666666666
Q ss_pred HHHcCC---------HHHHHHHHHcCCCc-------ccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 012683 195 AVAAGS---------LTCLDLLIQAGANA-------NIV-AGGATPLHIAADIGSTEIIKCLLKAGAD 245 (458)
Q Consensus 195 a~~~~~---------~~~~~~Ll~~g~~~-------~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~ 245 (458)
|+..++ .+++++|+++|+++ +.. ..|.||||+|+..|+.++|++|+++|.+
T Consensus 183 A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 666555 56666777776666 233 5577777777777777777777776654
No 54
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=1e-33 Score=264.98 Aligned_cols=253 Identities=17% Similarity=0.124 Sum_probs=192.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC---------
Q 012683 16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ--------- 86 (458)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~--------- 86 (458)
+....++.....++|++|++. |+.+ +..+..|.|+++ |+.++|+.|+++ |++++..
T Consensus 21 ~~~~~~~~~~~~dlv~~ll~~----ga~i-----~~~~~~g~~~~~-----g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~ 85 (327)
T 1sw6_A 21 DRTAGPIITFTHDLTSDFLSS----PLKI-----MKALPSPVVNDN-----EQKMKLEAFLQR-LLFPEIQEMPTSLNND 85 (327)
T ss_dssp ----CCEEECCTTCCCSTTTS----SCCC-----EECBCCCCCCCH-----HHHHHHHHHHHH-HHC-------------
T ss_pred cccccchhhhcCchHHHHhhC----Cccc-----ccCCCCCCcccC-----chhHHHHHHHHh-ccCCccccchHhhhcc
Confidence 334444445566667777765 4443 567788999988 999999999998 7665541
Q ss_pred --------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-
Q 012683 87 --------DEDGETPLLHAARQGHTETAKYLFEHGANPTI-PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG- 156 (458)
Q Consensus 87 --------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~- 156 (458)
.....+.+|+|+..+..+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~ 165 (327)
T 1sw6_A 86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 165 (327)
T ss_dssp ------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCC
T ss_pred cccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 11122345888888889999999999999999 89999999999999999999999999999999877655
Q ss_pred cHHHHHHhCCC---HHHHHHHHhcC-CCCCCCCCCCCcHHHHHHH----cCCHHHHHHHHHc------------------
Q 012683 157 TPLIWAAGHGQ---QEAVKVLLEHH-ANPNAETEDNITPLLSAVA----AGSLTCLDLLIQA------------------ 210 (458)
Q Consensus 157 t~l~~A~~~~~---~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~----~~~~~~~~~Ll~~------------------ 210 (458)
||||+|+..|+ .++++.|++.+ .+++..+..|+||||+|+. .|+.+++++|++.
T Consensus 166 TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~ 245 (327)
T 1sw6_A 166 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245 (327)
T ss_dssp CHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--
T ss_pred CHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhh
Confidence 99999999998 67777887776 6788899999999999999 8999999999987
Q ss_pred --CCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcch
Q 012683 211 --GANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTV 287 (458)
Q Consensus 211 --g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 287 (458)
|++++.. ..|.||||.|+. +++|+++ +++.+|..|+||||+|+..|+.++|++|++++.+ .+..+..+
T Consensus 246 ~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G 316 (327)
T 1sw6_A 246 EKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSG 316 (327)
T ss_dssp --------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred cccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCC
Confidence 7888877 779999999996 9999998 6899999999999999999999999999999765 34444445
Q ss_pred hhHHH
Q 012683 288 DGILE 292 (458)
Q Consensus 288 ~~~~~ 292 (458)
.+++.
T Consensus 317 ~TpL~ 321 (327)
T 1sw6_A 317 LRPVD 321 (327)
T ss_dssp CCGGG
T ss_pred CCHHH
Confidence 44443
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.7e-31 Score=243.65 Aligned_cols=186 Identities=26% Similarity=0.364 Sum_probs=137.1
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCC-cHHHHHH----
Q 012683 92 TPLLHAARQGHTETAKYLFEHGAN--PTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAA---- 163 (458)
Q Consensus 92 t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~-t~l~~A~---- 163 (458)
+++|.|+..|+.+.++.+++.+.+ ++..|..|.||||+|+..|+.+++++|++.|. +++..+..+ ||||+|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 344555555555555555544433 44555555555555555555555555555554 444444333 5555555
Q ss_pred -hCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHH
Q 012683 164 -GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK 241 (458)
Q Consensus 164 -~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~ 241 (458)
..++.+++++|++.|.+.+..+..|.||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.++|++|++
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA 237 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence 446777888888888877778888889999999999999999999999988877 679999999999999999999998
Q ss_pred -cCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683 242 -AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS 277 (458)
Q Consensus 242 -~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 277 (458)
.|++++.+|..|+||||+|+..|+.+++++|+++..
T Consensus 238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 899999999999999999999999999999987643
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=6.5e-31 Score=239.86 Aligned_cols=190 Identities=25% Similarity=0.331 Sum_probs=175.6
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHH
Q 012683 53 DANKRGALHFAAREGKTDVCKYLLEELKLD--VDTQDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHH 129 (458)
Q Consensus 53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~ 129 (458)
+..+.+++|.|+..|+.+.++.++.. +.+ ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+
T Consensus 73 ~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~ 151 (276)
T 4hbd_A 73 RLACRSDAHPELVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML 151 (276)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH
Confidence 34567889999999999999999876 444 78899999999999999999999999999998 999999999999999
Q ss_pred HH-----HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683 130 SA-----GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203 (458)
Q Consensus 130 A~-----~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 203 (458)
|+ ..++.+++++|++.|...+..+..+ ||||+|+..|+.+++++|+++|++++..|.+|+||||+|+..|+.++
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence 99 6688999999999998887766544 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcC
Q 012683 204 LDLLIQ-AGANANIV-AGGATPLHIAADIGSTEIIKCLLKAG 243 (458)
Q Consensus 204 ~~~Ll~-~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g 243 (458)
+++|++ .|++++.. ..|.||||+|+..|+.+++++|++++
T Consensus 232 v~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 232 AGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999 89999988 78999999999999999999999863
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=5.5e-30 Score=220.84 Aligned_cols=162 Identities=28% Similarity=0.359 Sum_probs=119.1
Q ss_pred hhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 012683 48 VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127 (458)
Q Consensus 48 ~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 127 (458)
..+..|.+|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence 3456777888888888888888888888887 778888888888888888888888888888888888888877788888
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 012683 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL 206 (458)
Q Consensus 128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 206 (458)
|+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||+++|+..|+.+++++
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~ 185 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence 88777777777777777777666554433 66666666666666666666666666666666666666666666666666
Q ss_pred HHHc
Q 012683 207 LIQA 210 (458)
Q Consensus 207 Ll~~ 210 (458)
|++.
T Consensus 186 Ll~~ 189 (192)
T 2rfm_A 186 FTEV 189 (192)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=3.3e-30 Score=222.28 Aligned_cols=161 Identities=29% Similarity=0.330 Sum_probs=116.5
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHH
Q 012683 83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWA 162 (458)
Q Consensus 83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A 162 (458)
++.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------------- 90 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK----------------- 90 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-----------------
Confidence 456677777777777777777777777777777777766666666666666555555555554
Q ss_pred HhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHH
Q 012683 163 AGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK 241 (458)
Q Consensus 163 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~ 241 (458)
|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|++
T Consensus 91 ---------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (192)
T 2rfm_A 91 ---------------GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155 (192)
T ss_dssp ---------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred ---------------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4455555566667777777777777777777777776665 567788888888888888888888
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683 242 AGADPNVTDEDGQKPIQVAAARGNREAVEILFPL 275 (458)
Q Consensus 242 ~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 275 (458)
+|++++.+|..|+||+|+|+..|+.+++++|+++
T Consensus 156 ~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 156 LGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 8888888888888888888888888888888764
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=5.5e-30 Score=216.75 Aligned_cols=169 Identities=26% Similarity=0.374 Sum_probs=103.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135 (458)
Q Consensus 56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 135 (458)
+.||||.|+..|+.+++++|++..+..++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 45778888888888888888877333467777788888888888888888888888888877777777777777777666
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 012683 136 IELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN 215 (458)
Q Consensus 136 ~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 215 (458)
.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 82 ~~~v~~Ll~~g~~~~--------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 129 (172)
T 3v30_A 82 TDIVGLLLERDVDIN--------------------------------IYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129 (172)
T ss_dssp HHHHHHHHTTTCCTT--------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC--------------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 666666666555544 344444444444444444444444444444444
Q ss_pred cc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcH
Q 012683 216 IV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256 (458)
Q Consensus 216 ~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~ 256 (458)
.. ..|.||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus 130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 130 TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred ccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 44 345555555555555555555555555555555555444
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.5e-29 Score=213.03 Aligned_cols=158 Identities=27% Similarity=0.392 Sum_probs=122.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 134 (458)
.|.||||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 477888888888888888888887 7888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 012683 135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213 (458)
Q Consensus 135 ~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 213 (458)
+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||+++|+..|+.+++++|++++.+
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 8888888877777776555443 777777777777777777777777766666666666666666666666666665543
No 61
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=9.8e-30 Score=215.17 Aligned_cols=142 Identities=23% Similarity=0.295 Sum_probs=123.5
Q ss_pred hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128 (458)
Q Consensus 49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 128 (458)
.+..+..|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 107 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLL 107 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 567788999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 012683 129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP 191 (458)
Q Consensus 129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~ 191 (458)
+|+..|+.+++++|++.|++++..+..+ ||||+|+..++.+++++|++++.++...+..|.||
T Consensus 108 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 108 YAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 9999999999999999998887766544 88888888888888888888887777766666665
No 62
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=2.5e-29 Score=212.02 Aligned_cols=156 Identities=38% Similarity=0.544 Sum_probs=107.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCH
Q 012683 89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ 168 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~ 168 (458)
.+.++|+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~------------------------------ 62 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI------------------------------ 62 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH------------------------------
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH------------------------------
Confidence 44556666666666666666666666655555555555555555555554
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q 012683 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN 247 (458)
Q Consensus 169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~ 247 (458)
+++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++
T Consensus 63 --v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 140 (169)
T 2y1l_E 63 --VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140 (169)
T ss_dssp --HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred --HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 45555555555556666677777777777777777777777777665 567788888888888888888888888888
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 248 VTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
.+|..|.||||+|+..|+.+++++|+++|
T Consensus 141 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 88888888888888888888888887654
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=3.4e-29 Score=211.12 Aligned_cols=160 Identities=32% Similarity=0.431 Sum_probs=133.8
Q ss_pred hcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683 51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130 (458)
Q Consensus 51 ~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 130 (458)
.....+.|+|+.|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 3445678999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 012683 131 AGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209 (458)
Q Consensus 131 ~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 209 (458)
+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 99999999999998888877665444 77777777777777777777777777777777777777777777777777766
Q ss_pred cC
Q 012683 210 AG 211 (458)
Q Consensus 210 ~g 211 (458)
.|
T Consensus 168 ~G 169 (169)
T 2y1l_E 168 LN 169 (169)
T ss_dssp C-
T ss_pred cC
Confidence 54
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2.3e-29 Score=210.72 Aligned_cols=156 Identities=29% Similarity=0.364 Sum_probs=106.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 134 (458)
...||||.|+..|+.+++++|++. |.+++..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 345788888888888888888875 77777777788888888777 8888888888888887777777777777777777
Q ss_pred CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683 135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN-PNAETEDNITPLLSAVAAGSLTCLDLLIQAGA 212 (458)
Q Consensus 135 ~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~ 212 (458)
+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|.+ ++..+..|.||||+|+..|+.+++++|+++|+
T Consensus 82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 7777777777666665544433 666666666666666666666555 35555555555555555555555555555554
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=3.2e-29 Score=210.94 Aligned_cols=156 Identities=24% Similarity=0.328 Sum_probs=103.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCH
Q 012683 89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ 168 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~ 168 (458)
.|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------------------------ 57 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------------------------ 57 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------------------------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH------------------------
Confidence 35566666666666666666666666666555555555555555555555555555
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q 012683 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN 247 (458)
Q Consensus 169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~ 247 (458)
+|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++
T Consensus 58 --------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 129 (167)
T 3v31_A 58 --------NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129 (167)
T ss_dssp --------TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred --------cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 44455555556666666666666666666666666666655 557777777777777777777777777777
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 248 VTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
.+|..|+||+|+|+..|+.+++++|++++
T Consensus 130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 130 IETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 77777777777777777777777777654
No 66
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=3.6e-29 Score=207.31 Aligned_cols=149 Identities=27% Similarity=0.374 Sum_probs=121.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203 (458)
Q Consensus 124 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 203 (458)
.|+|+.|+..|+.+++++|++.|.+++....+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 82 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI 82 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHH
Confidence 35666666666666666666666655544444477777777777777777777777777788888888888888888888
Q ss_pred HHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhh
Q 012683 204 LDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272 (458)
Q Consensus 204 ~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 272 (458)
+++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 83 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 88888888888877 6789999999999999999999999999999999999999999999999999987
No 67
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=1.4e-32 Score=259.73 Aligned_cols=249 Identities=16% Similarity=0.144 Sum_probs=181.5
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCC---CCCCCCC
Q 012683 15 VQQFLNAAC-TGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDV---DTQDEDG 90 (458)
Q Consensus 15 ~~~l~~A~~-~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g 90 (458)
...++.|.. .++.++++++++. +.++.||||+|+..|+.++|++|++. |... +..+..|
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~----------------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~~~~~ 128 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKK----------------GIKSEVICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAEN 128 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHH----------------TCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHc----------------CCCcCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHhccCC
Confidence 344555555 4667777776654 34556999999999999999999987 6522 2445578
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC--CCC-CCcHHHHHH-
Q 012683 91 ETPLLHAARQGHTETAKYLFEHGANP---TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS--ESD-AGTPLIWAA- 163 (458)
Q Consensus 91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~--~~~-~~t~l~~A~- 163 (458)
.||||+|+..|+.++|++|+++|+++ +..+.. .||||+|+..|+.+++++|+++|++++. .+. +.||||+|+
T Consensus 129 ~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~ 207 (376)
T 2aja_A 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH
Confidence 89999999999999999999999752 222333 8999999999999999999999998654 333 349999999
Q ss_pred hCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcC------------
Q 012683 164 GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIG------------ 231 (458)
Q Consensus 164 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~------------ 231 (458)
..|+.+++++|++.|. .|.|||+.|+..|+.+++++|+++|++++.. .++++.|+..|
T Consensus 208 ~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~---~~~l~~A~~~g~~~vv~~~~~~~ 277 (376)
T 2aja_A 208 GRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEM---HDAFKLSNPDGVFDLVTKSECLQ 277 (376)
T ss_dssp TTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHH---HTTTTTTSSSSCCCCSSHHHHHH
T ss_pred HCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccc---cHHHHHHHHCCChhhhcHHhhhh
Confidence 9999999999999774 3889999999999999999999999887643 12333333333
Q ss_pred ---------------cHHHHHHHHHcCC-----CCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHH
Q 012683 232 ---------------STEIIKCLLKAGA-----DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGIL 291 (458)
Q Consensus 232 ---------------~~~iv~~Ll~~g~-----~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 291 (458)
..+.+++|++.+. +.......+.||||+|+..|+.+++++|++++ .+++|..++..
T Consensus 278 ~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~ 353 (376)
T 2aja_A 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----SVLALTKANNY 353 (376)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC----
T ss_pred hHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhcc
Confidence 3456666665321 11223345678999999999999999999864 45556666655
Q ss_pred HHHH
Q 012683 292 EYMQ 295 (458)
Q Consensus 292 ~~~~ 295 (458)
.+..
T Consensus 354 ~~~~ 357 (376)
T 2aja_A 354 YINE 357 (376)
T ss_dssp ----
T ss_pred cccc
Confidence 4433
No 68
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=4.8e-29 Score=208.74 Aligned_cols=154 Identities=29% Similarity=0.379 Sum_probs=87.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCH
Q 012683 90 GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168 (458)
Q Consensus 90 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~ 168 (458)
..||||.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|++.|++++..+..+ ||||+|+..|+.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3466777777777777777777776666666666666666665 66666666666555554443322 455555555555
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCC-CC
Q 012683 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGAD-PN 247 (458)
Q Consensus 169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~-~~ 247 (458)
+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++ ++
T Consensus 84 ~~v~~Ll~~g~~~~~~~~~--------------------------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 131 (162)
T 1ihb_A 84 DTLQTLLEFQADVNIEDNE--------------------------------GNLPLHLAAKEGHLRVVEFLVKHTASNVG 131 (162)
T ss_dssp HHHHHHHHTTCCTTCCCTT--------------------------------SCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHHcCCCCCCcCCC--------------------------------CCCHHHHHHHcCCHHHHHHHHHccCCCCC
Confidence 5555555554444444444 55555555555555555555555554 35
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 248 VTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
.+|..|+||||+|+..|+.+++++|+++|
T Consensus 132 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 132 HRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 55555555555555555555555555544
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=7.2e-29 Score=211.28 Aligned_cols=163 Identities=23% Similarity=0.290 Sum_probs=117.4
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683 54 ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133 (458)
Q Consensus 54 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 133 (458)
.++.++||.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 35678899999999999999998887778888888899999999999999999999999988888888888888888887
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA 212 (458)
Q Consensus 134 ~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~ 212 (458)
|+.+++++|++.|++++..+..+ ||||+|+..++.+++++|+++|++++..+..|.||+++|+..++.+++++|++.|+
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 77777777777776665554433 66666666666666666666666665555555555555555555555555555555
Q ss_pred Cccc
Q 012683 213 NANI 216 (458)
Q Consensus 213 ~~~~ 216 (458)
+++.
T Consensus 163 ~~~~ 166 (179)
T 3f6q_A 163 NLNR 166 (179)
T ss_dssp CCSC
T ss_pred Cccc
Confidence 5543
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=4.4e-29 Score=209.62 Aligned_cols=160 Identities=29% Similarity=0.379 Sum_probs=132.1
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683 52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA 131 (458)
Q Consensus 52 ~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 131 (458)
.+..|.|+||.|+..|+.++++.|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 45678899999999999999999998767888888889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683 132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210 (458)
Q Consensus 132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 210 (458)
..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||+++|+. |+.+++++|+++
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~ 162 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence 9988888888888888877665544 77888887777777777777777777777777777777655 677777777776
Q ss_pred CC
Q 012683 211 GA 212 (458)
Q Consensus 211 g~ 212 (458)
|+
T Consensus 163 gA 164 (165)
T 3twr_A 163 AA 164 (165)
T ss_dssp --
T ss_pred cc
Confidence 64
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=4.1e-28 Score=200.94 Aligned_cols=150 Identities=27% Similarity=0.387 Sum_probs=113.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135 (458)
Q Consensus 56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 135 (458)
..|+||.|+..|+.+++++|++. |.+++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 35788888888888888888887 77665 47778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 012683 136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207 (458)
Q Consensus 136 ~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L 207 (458)
.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 888888877777776555444 777777777777777777777777666666666666666666666666654
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.7e-32 Score=238.58 Aligned_cols=181 Identities=24% Similarity=0.252 Sum_probs=119.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCC
Q 012683 89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~ 167 (458)
.+.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+
T Consensus 20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~ 99 (229)
T 2vge_A 20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCND 99 (229)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 34455666666666666666666666666666666666666666666666666666666665544333 66666666666
Q ss_pred HHHHHHHHhcCCCCCCCC-CCCCcHHHHH--HHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcC
Q 012683 168 QEAVKVLLEHHANPNAET-EDNITPLLSA--VAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAG 243 (458)
Q Consensus 168 ~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g 243 (458)
.+++++|+++|++++..+ ..|.||||+| +..|+.+++++|++.|++++.. ..|.|+++.++..+ .+++|++.|
T Consensus 100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~~g 176 (229)
T 2vge_A 100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF---GDELSFREG 176 (229)
T ss_dssp HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS---TTBCCBCTT
T ss_pred HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc---ccccCcccc
Confidence 666666666666666654 4667777776 6667777777777777766665 44566666444333 235677788
Q ss_pred CC--CCCCCCCCCcHHHHHHHcCCHHHHHhh
Q 012683 244 AD--PNVTDEDGQKPIQVAAARGNREAVEIL 272 (458)
Q Consensus 244 ~~--~~~~~~~g~t~l~~A~~~~~~~~v~~L 272 (458)
++ ++.+|..|+||||+|+.+|+.++|+.+
T Consensus 177 a~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp CEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred ccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 77 677888899999999999998888654
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=2.8e-28 Score=207.57 Aligned_cols=164 Identities=23% Similarity=0.285 Sum_probs=121.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCC
Q 012683 89 DGETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG 166 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~ 166 (458)
.+.++||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 466788888888888888888887 56677888888888888888888888888888887777665444 7777777777
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 012683 167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD 245 (458)
Q Consensus 167 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~ 245 (458)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..++.+++++|+++|++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 777777777777777777777777777777777777777777777777666 5677777777777777777777777777
Q ss_pred CCCCCCC
Q 012683 246 PNVTDED 252 (458)
Q Consensus 246 ~~~~~~~ 252 (458)
++..+..
T Consensus 164 ~~~~~~~ 170 (179)
T 3f6q_A 164 LNRIPYK 170 (179)
T ss_dssp CSCBCCC
T ss_pred cccCCcc
Confidence 6655543
No 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=8.1e-32 Score=238.45 Aligned_cols=189 Identities=21% Similarity=0.184 Sum_probs=170.1
Q ss_pred hhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 012683 48 VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127 (458)
Q Consensus 48 ~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 127 (458)
..+..+.++.||||+|+..|+.+++++|++. |.+++..|..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 13 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL 91 (229)
T 2vge_A 13 KARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91 (229)
T ss_dssp CCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred cccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence 3445677889999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCC--CCCcHHHHH--HhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683 128 HHSAGIGNIELLTYLLSKGAEVDSES--DAGTPLIWA--AGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203 (458)
Q Consensus 128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~--~~~t~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 203 (458)
|+|+..|+.+++++|++.|++++..+ .+.||||+| +..|+.+++++|++.|++++..+..|.++++.++..+.
T Consensus 92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~--- 168 (229)
T 2vge_A 92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG--- 168 (229)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---
Confidence 99999999999999999999998764 455999999 99999999999999999999999999999986555543
Q ss_pred HHHHHHcCCCccc--c-CCCCcHHHHHHhcCcHHHHHHHH
Q 012683 204 LDLLIQAGANANI--V-AGGATPLHIAADIGSTEIIKCLL 240 (458)
Q Consensus 204 ~~~Ll~~g~~~~~--~-~~g~t~L~~A~~~~~~~iv~~Ll 240 (458)
.++|++.|++++. . ..|.||||+|+..|+.++|+.++
T Consensus 169 ~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 169 DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 3677888998543 3 56999999999999999998644
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.6e-28 Score=206.26 Aligned_cols=157 Identities=30% Similarity=0.446 Sum_probs=114.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCCCC-CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 012683 120 SNLGATALHHSAGIGNIELLTYLLSKG-AEVDSESD-AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197 (458)
Q Consensus 120 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~-~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~ 197 (458)
+..|.|+||.|+..|+.+++++|++.+ .+++..+. +.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 344555556666555666655555532 23332222 2366666777777777777777777777777788888888888
Q ss_pred cCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 198 AGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 198 ~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
.|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+. ++.+++++|++.+
T Consensus 85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 88888888888888888776 668889999999999999999999999999999999999998766 8889999998765
Q ss_pred C
Q 012683 277 S 277 (458)
Q Consensus 277 ~ 277 (458)
+
T Consensus 164 A 164 (165)
T 3twr_A 164 A 164 (165)
T ss_dssp -
T ss_pred c
Confidence 4
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=7.8e-28 Score=199.97 Aligned_cols=152 Identities=26% Similarity=0.374 Sum_probs=121.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683 56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135 (458)
Q Consensus 56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 135 (458)
+.||||.|+..|+.+++++|++..+.+++..+..|.||||+ +..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 45889999999999999999887566888888889999999 88899999999999999988888888888888888888
Q ss_pred HHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 012683 136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209 (458)
Q Consensus 136 ~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 209 (458)
.+++++|++.|++++..+..+ ||||+|+..|+.+++++|++. ++++..+..|.|||++|+..|+.+++++|++
T Consensus 81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 888888888887776655444 777777777777777777777 6777777777777777777777777776665
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=1e-27 Score=199.24 Aligned_cols=149 Identities=28% Similarity=0.438 Sum_probs=107.2
Q ss_pred cHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683 125 TALHHSAGIGNIELLTYLLSK-GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202 (458)
Q Consensus 125 t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~ 202 (458)
|+||.|+..|+.+++++|++. +.+++..+..+ ||||+ +..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 82 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 445555555555555555444 11333333222 55555 5556666666666666666677777788888888888888
Q ss_pred HHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683 203 CLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL 275 (458)
Q Consensus 203 ~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 275 (458)
++++|+++|++++.. ..|.||||+|+..|+.+++++|+++ ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 888888888887766 5688888999999999999999988 88888999999999999999999999988864
No 78
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=8.6e-32 Score=254.27 Aligned_cols=238 Identities=17% Similarity=0.160 Sum_probs=166.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCC---CCCCCCC
Q 012683 14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDV---DTQDEDG 90 (458)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g 90 (458)
..++||.|+..|+.++|++|++.... .......+..|.||||+||..|+.++|++|++. |+++ +..+.+
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~------~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~- 163 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTS------DEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN- 163 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--C------CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH-
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCc------HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC-
Confidence 35899999999999999999976221 111123345678999999999999999999998 7542 222223
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCC
Q 012683 91 ETPLLHAARQGHTETAKYLFEHGANPTI--PSNLGATALHHSA-GIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQ 167 (458)
Q Consensus 91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~ 167 (458)
.||||+|+..|+.++|++|+++|++++. .+..|.||||+|+ ..|+.+++++|++.|.. +.|||++|+..|+
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~------~~taL~~Aa~~g~ 237 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM------LAYAEIHEFEYGE 237 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH------HHHHHHCTTTTTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc------cchHHHHHHHCCC
Confidence 8999999999999999999999999876 7788999999999 99999999999997742 4499999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC---------------------------CHHHHHHHHHc---------C
Q 012683 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAG---------------------------SLTCLDLLIQA---------G 211 (458)
Q Consensus 168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~---------------------------~~~~~~~Ll~~---------g 211 (458)
.+++++|+++|.+++..+ ++++.|+..| ..+.+++|++. |
T Consensus 238 ~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g 313 (376)
T 2aja_A 238 KYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 313 (376)
T ss_dssp TTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred HHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccC
Confidence 999999999877653321 1222222222 24455666653 3
Q ss_pred CCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683 212 ANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL 275 (458)
Q Consensus 212 ~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 275 (458)
++++ .+.||||+|+..|+.++|++|++.| ..++..|+|++.+|-..|+.++++.-+.+
T Consensus 314 ~~~n---~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 314 TIPG---DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp SSTT---CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC----------------------
T ss_pred CCCC---CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHHH
Confidence 3333 4779999999999999999999864 67788899999999999999999877654
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=7.3e-29 Score=221.46 Aligned_cols=185 Identities=22% Similarity=0.268 Sum_probs=101.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCC
Q 012683 89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~ 167 (458)
.|.||||.|+..|+.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..+..+ ||||+|+..|+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~ 82 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 3455555555555555555555555555432 344555555555555555555555555554444333 55555666666
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCC-cHHHHH--HhcCcHHHHHHHHHcC
Q 012683 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGA-TPLHIA--ADIGSTEIIKCLLKAG 243 (458)
Q Consensus 168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~-t~L~~A--~~~~~~~iv~~Ll~~g 243 (458)
.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.. ..|. ||||+| +..|+.+++++|+++|
T Consensus 83 ~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence 66666666666667777777777777777777777777777777777766 3333 888887 6777888888888877
Q ss_pred CCCCCC---------CCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 244 ADPNVT---------DEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 244 ~~~~~~---------~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
++++.. +..+.++++++...|. ++++|...+
T Consensus 163 a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~ 202 (239)
T 1ycs_B 163 EKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRED 202 (239)
T ss_dssp HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCT
T ss_pred hcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecC
Confidence 777665 6678899988888886 455555443
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=3.4e-28 Score=217.09 Aligned_cols=203 Identities=20% Similarity=0.285 Sum_probs=146.0
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683 54 ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133 (458)
Q Consensus 54 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 133 (458)
..|.||||.|+..|+.++++.|+++ |.+++.. ..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAH-GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhcc-CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 4689999999999999999999998 9998864 6789999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHH--HHcCCHHHHHHHHH
Q 012683 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNI-TPLLSA--VAAGSLTCLDLLIQ 209 (458)
Q Consensus 134 ~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a--~~~~~~~~~~~Ll~ 209 (458)
|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|. ||+|+| +..|+.+++++|++
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~ 160 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence 99999999999999998877655 999999999999999999999999999988877 999999 88899999999999
Q ss_pred cCCCcccc----------CCCCcHHHHHHhcCcHHHHHHHHHcCCC------CCCCCCCCCcHHHHH
Q 012683 210 AGANANIV----------AGGATPLHIAADIGSTEIIKCLLKAGAD------PNVTDEDGQKPIQVA 260 (458)
Q Consensus 210 ~g~~~~~~----------~~g~t~L~~A~~~~~~~iv~~Ll~~g~~------~~~~~~~g~t~l~~A 260 (458)
+|++++.. ..+.+++++++..|. +++.|.+.+.+ ....+..|.+|.++.
T Consensus 161 ~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv 225 (239)
T 1ycs_B 161 VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 225 (239)
T ss_dssp HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGE
T ss_pred hhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHe
Confidence 99888764 347888888888876 45555444333 123455566776654
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.1e-25 Score=182.32 Aligned_cols=131 Identities=24% Similarity=0.247 Sum_probs=70.9
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-C-cH
Q 012683 81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-G-TP 158 (458)
Q Consensus 81 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~-t~ 158 (458)
.+++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|++.|++++..+.. + ||
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 4455555555666666666666666666666555555555555555555555 5555555555555554444332 2 45
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683 159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA 212 (458)
Q Consensus 159 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~ 212 (458)
||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 555555555555555555555555555555555555555555555555555544
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=8.1e-26 Score=183.05 Aligned_cols=120 Identities=33% Similarity=0.436 Sum_probs=85.8
Q ss_pred cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CC-CCcHHHHHHhcCcHH
Q 012683 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AG-GATPLHIAADIGSTE 234 (458)
Q Consensus 157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~-g~t~L~~A~~~~~~~ 234 (458)
||||+|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|+++|++++.. .. |.||||+|+..|+.+
T Consensus 14 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 92 (136)
T 1d9s_A 14 AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD 92 (136)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence 66666666666666666666666666666667777777777 7777777777777777666 44 677777777777777
Q ss_pred HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS 277 (458)
Q Consensus 235 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 277 (458)
++++|+++|++++.+|..|+||||+|+..++.+++++|+++++
T Consensus 93 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 93 TLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 7777777777777777777777777777777777777776553
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=2.5e-26 Score=195.88 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=112.8
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ----EAVKVLLEHHANPNAETEDNITPLLSAVAAGS 200 (458)
Q Consensus 125 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~----~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~ 200 (458)
++|+.|+..|+.+.++.++..+.+......+.||||+|+.+++. +++++|+++|++++.++..|+||||+|+..|+
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred cHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 45555555555555555555443321112234666666666653 47777888888888888888888888887776
Q ss_pred ------HHHHHHHHHcCCCcccc-CCCC-cHHHHHHhc-----CcHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683 201 ------LTCLDLLIQAGANANIV-AGGA-TPLHIAADI-----GSTEIIKCLLK-AGADPNVTDEDGQKPIQVAAARGNR 266 (458)
Q Consensus 201 ------~~~~~~Ll~~g~~~~~~-~~g~-t~L~~A~~~-----~~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~ 266 (458)
.+++++|+++|++++.. ..|. ||||+|+.. ++.+++++|++ +|++++.+|..|+||||+|+..|+.
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~ 167 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCH
T ss_pred cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCH
Confidence 56788888888888877 5677 888888884 45679999999 9999999999999999999999999
Q ss_pred HHHHhhcCC
Q 012683 267 EAVEILFPL 275 (458)
Q Consensus 267 ~~v~~Ll~~ 275 (458)
++|++|.++
T Consensus 168 ~~v~~L~~~ 176 (186)
T 3t8k_A 168 IALKMMEDY 176 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999854
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=1.1e-25 Score=186.85 Aligned_cols=143 Identities=22% Similarity=0.294 Sum_probs=103.0
Q ss_pred hhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHH
Q 012683 50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGAT-ALH 128 (458)
Q Consensus 50 ~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~ 128 (458)
...+..|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+ .|+.+++++|+++|++++..+..|.| |||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH 83 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 34566788899999999999999888887 8888888888889998885 88888899888888888888888888 888
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 012683 129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS 194 (458)
Q Consensus 129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~ 194 (458)
+|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|+.+.
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence 8888888888888888888777665544 78888888888888888888887777777777776653
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=1.4e-25 Score=186.26 Aligned_cols=139 Identities=25% Similarity=0.375 Sum_probs=80.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCc-HHHHHHHc
Q 012683 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNIT-PLLSAVAA 198 (458)
Q Consensus 121 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t-~l~~a~~~ 198 (458)
..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+ .|+.+++++|+++|++++..+..|.| |||+|+..
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~ 88 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE 88 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHC
Confidence 334444444444444444444444444444333322 5555553 55666666666666666777777777 88888888
Q ss_pred CCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683 199 GSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260 (458)
Q Consensus 199 ~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A 260 (458)
|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus 89 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 89 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 8888888888888877776 5688888888888888888888888888888888888887643
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=7.7e-26 Score=192.81 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCH----HHHHHHHHhCCCCCCCCCC
Q 012683 13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKT----DVCKYLLEELKLDVDTQDE 88 (458)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~ll~~~~~~~~~~~~ 88 (458)
..++.|+.||+.|+++.++.++.... ....+..|.||||+|+..|+. +++++|++. |++++.++.
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~----------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~ 73 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKGY----------EDKESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTK 73 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHSS----------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCT
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcCc----------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCC
Confidence 45567888888888888887776511 111235688888888888864 478888876 888888888
Q ss_pred CCCcHHHHHHHcCC------HHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHH
Q 012683 89 DGETPLLHAARQGH------TETAKYLFEHGANPTIPSNLGA-TALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIW 161 (458)
Q Consensus 89 ~g~t~L~~A~~~g~------~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~ 161 (458)
.|+||||+|+..|+ .+++++|+++|++++.+|..|. ||||+|+..+..+
T Consensus 74 ~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~------------------------ 129 (186)
T 3t8k_A 74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE------------------------ 129 (186)
T ss_dssp TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCH------------------------
T ss_pred CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCCh------------------------
Confidence 88888888888776 5678888888888888888887 7888777643211
Q ss_pred HHhCCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683 162 AAGHGQQEAVKVLLE-HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210 (458)
Q Consensus 162 A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 210 (458)
.+..+++++|++ +|++++..|..|.||||+|+..|+.+++++|.+.
T Consensus 130 ---~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 130 ---NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp ---HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 112345555555 5555555555556666666655655555555544
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=1.4e-24 Score=175.76 Aligned_cols=120 Identities=42% Similarity=0.598 Sum_probs=112.8
Q ss_pred cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHH
Q 012683 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI 235 (458)
Q Consensus 157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~i 235 (458)
||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.++
T Consensus 16 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~ 95 (136)
T 2jab_A 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI 95 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence 8999999999999999999999999999999999999999999999999999999999877 679999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683 236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276 (458)
Q Consensus 236 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 276 (458)
+++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 96 v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 96 AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998764
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=8.6e-24 Score=168.54 Aligned_cols=124 Identities=46% Similarity=0.674 Sum_probs=85.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 134 (458)
+|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence 467777777777777777777776 7777777777777777777777777777777777777777777777777777766
Q ss_pred CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCC
Q 012683 135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179 (458)
Q Consensus 135 ~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~ 179 (458)
+.+++++|++.|++++..+..+ |||++|+..++.+++++|+++|+
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 6666666666666655444333 55555555555555555555554
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=4.8e-24 Score=172.54 Aligned_cols=126 Identities=32% Similarity=0.497 Sum_probs=100.8
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683 52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA 131 (458)
Q Consensus 52 ~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 131 (458)
....+.||||+|+..|+.+++++|++. |.+++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 345677889999999999999988887 8888888888899999999999999999999888888888888888888888
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcC
Q 012683 132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178 (458)
Q Consensus 132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~ 178 (458)
..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 8888888888888777776555443 7777777777777777776654
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=1.5e-23 Score=167.04 Aligned_cols=125 Identities=43% Similarity=0.627 Sum_probs=95.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCC
Q 012683 89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~ 167 (458)
+|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..+ ||||+|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47888888888888888888888888888888888888888888888888888888777776555433 77777777777
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 012683 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213 (458)
Q Consensus 168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 213 (458)
.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 7777777777777776677777777777777777777777766654
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=1.7e-24 Score=175.44 Aligned_cols=131 Identities=27% Similarity=0.339 Sum_probs=108.8
Q ss_pred CCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHH
Q 012683 147 AEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLH 225 (458)
Q Consensus 147 ~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~ 225 (458)
.++.....+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||
T Consensus 2 ~d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 81 (137)
T 3c5r_A 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLH 81 (137)
T ss_dssp --CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHH
Confidence 34433344457888888888888888888888888888888999999999999999999999999988877 66899999
Q ss_pred HHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683 226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS 277 (458)
Q Consensus 226 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 277 (458)
+|+..|+.+++++|+++|++++.+|..|+||+|+|+..++.+++++|.+.+.
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999998876654
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=1.8e-23 Score=169.45 Aligned_cols=122 Identities=25% Similarity=0.392 Sum_probs=59.1
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683 52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA 131 (458)
Q Consensus 52 ~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 131 (458)
.|.+|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 344455555555555555555555544 4555555555555555555555555555555555555555444555555555
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHH
Q 012683 132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174 (458)
Q Consensus 132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~L 174 (458)
..|+.+++++|++.|++++..+..+ ||+++|+..+..+++++|
T Consensus 85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 4444444444444444444333322 444444444444443333
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=3.9e-23 Score=184.67 Aligned_cols=140 Identities=28% Similarity=0.319 Sum_probs=85.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-C-CCcHHHHHHhCC
Q 012683 89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-D-AGTPLIWAAGHG 166 (458)
Q Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~-~~t~l~~A~~~~ 166 (458)
.|.||||.|+..|+.+++++|++ |++++..|..|.||||+|+..|+.+++++|++.|++++..+ . +.||||+|+..|
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence 34455555555555555555555 55555555555555555555555555555555555554433 2 226666666666
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 012683 167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGAD 245 (458)
Q Consensus 167 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~ 245 (458)
+.+++++|+++|++++..+..|.||||+|+..++. ..+.||||+|+..|+.+++++|++++.+
T Consensus 123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~----------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 123 RPEVVEALVELGADIEVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT----------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc----------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 66666666666677777777777777777653221 1267899999999999999999876443
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=6.3e-23 Score=174.98 Aligned_cols=109 Identities=34% Similarity=0.414 Sum_probs=77.8
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHH
Q 012683 53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHSA 131 (458)
Q Consensus 53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~ 131 (458)
+..|.||||+|+..|+.++++.|++ +.+++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 4567788888888888888888887 77888888888888888888888888888888888887776 66667766666
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHH
Q 012683 132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAA 163 (458)
Q Consensus 132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~ 163 (458)
..|+.+++++|++.|++++..+..+ ||||+|+
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 151 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIEVEDERGLTALELAR 151 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH
Confidence 6666666666655555544333322 4444444
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.3e-22 Score=173.10 Aligned_cols=139 Identities=28% Similarity=0.321 Sum_probs=122.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-C-CCcHHHHHHh
Q 012683 87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-D-AGTPLIWAAG 164 (458)
Q Consensus 87 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~-~~t~l~~A~~ 164 (458)
+..|.||||.|+..|+.++++.|++ |++++..|..|.||||+|+..|+.+++++|++.|++++..+ . +.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 3468899999999999999999999 99999999999999999999999999999999999997666 4 3499999999
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHc
Q 012683 165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKA 242 (458)
Q Consensus 165 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~ 242 (458)
.|+.+++++|+++|++++..+..|.||||+|+..++. ..+.++|++|+..|+.+++++|.++
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~----------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999874332 2367889999999999999988764
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=1.4e-22 Score=181.06 Aligned_cols=144 Identities=28% Similarity=0.308 Sum_probs=119.3
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHH
Q 012683 53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHSA 131 (458)
Q Consensus 53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~ 131 (458)
+..|.||||+|+..|+.+++++|++ +.+++..|..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 4568889999999999999988887 78888888889999999999999999999999998888887 77889999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683 132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210 (458)
Q Consensus 132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 210 (458)
..|+.+++++|+++|++++..+..+ ||||+|+..++ ...+.|||++|+..|+.+++++|++.
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 9999999999999988888766555 89998875221 24577899999999999999988887
Q ss_pred CCCcc
Q 012683 211 GANAN 215 (458)
Q Consensus 211 g~~~~ 215 (458)
+.+..
T Consensus 183 ~~~~~ 187 (244)
T 3ui2_A 183 VFEYA 187 (244)
T ss_dssp HEEEE
T ss_pred ccccc
Confidence 65543
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=1.3e-22 Score=160.93 Aligned_cols=112 Identities=28% Similarity=0.403 Sum_probs=101.9
Q ss_pred CcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHH
Q 012683 156 GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE 234 (458)
Q Consensus 156 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~ 234 (458)
.||||+|+..|+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.+
T Consensus 8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~ 87 (123)
T 3aaa_C 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS 87 (123)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence 38999999999999999999999999999999999999999999999999999999999887 67999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267 (458)
Q Consensus 235 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 267 (458)
++++|+++|++++.+|..|+||+|+|...+..+
T Consensus 88 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 88 CVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence 999999999999999999999999995433333
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.88 E-value=4.9e-22 Score=158.18 Aligned_cols=116 Identities=32% Similarity=0.540 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
.+.++.++++|+.+++.|+|++|++.|+++++++|.++.+|+++|.++.++|++++|+.+|++|++++|+++.+|+++|.
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
++..+|++++|++.|+++++++|++++++..++.++
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999998874
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=6.7e-23 Score=180.64 Aligned_cols=138 Identities=24% Similarity=0.305 Sum_probs=99.9
Q ss_pred hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHH
Q 012683 49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATAL 127 (458)
Q Consensus 49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L 127 (458)
.+..+..|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.++|++|++. |++++..|..|.|||
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred ccccccccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence 344566778888888888888888888886 888888888888888888888888888888887 888888888888888
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCC
Q 012683 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETED 187 (458)
Q Consensus 128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~ 187 (458)
|+|+..|+.+++++|++.|++++..+..+ |||++|+..++.++++.|++.++.....+..
T Consensus 145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~ 205 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE 205 (222)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchh
Confidence 88888888888888888887777665544 7777777777777777777777665554433
No 100
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=1e-21 Score=178.61 Aligned_cols=197 Identities=20% Similarity=0.185 Sum_probs=147.1
Q ss_pred CCCCCC-----CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 012683 80 KLDVDT-----QDEDGETPLLHAARQGHTETAKYLFEHGANPTI-PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153 (458)
Q Consensus 80 ~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~ 153 (458)
|..+.. .|..+.+.++.+...|+..+.+++...-..... +-..+....+ ....-..+++...........
T Consensus 51 g~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~ 126 (278)
T 1dcq_A 51 GVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHAD 126 (278)
T ss_dssp CTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSS
T ss_pred CCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccc
Confidence 555553 567888899999999998777766433221111 0011111111 111111223322221111111
Q ss_pred -CC-CcHHHHHHhCCCHHHHHHHHhcCCCC------CCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccc-CCCC
Q 012683 154 -DA-GTPLIWAAGHGQQEAVKVLLEHHANP------NAETEDNITPLLSAVAA---GSLTCLDLLIQAGANANIV-AGGA 221 (458)
Q Consensus 154 -~~-~t~l~~A~~~~~~~~~~~Ll~~~~~~------~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~-~~g~ 221 (458)
.. .++|+.|+..|+.+.++.++..|.++ +..+..|.||||+|+.. |+.+++++|+++|++++.. ..|.
T Consensus 127 ~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~ 206 (278)
T 1dcq_A 127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCC
T ss_pred cchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCC
Confidence 11 16899999999999999999999984 44478899999999999 8999999999999999987 7899
Q ss_pred cHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCC
Q 012683 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280 (458)
Q Consensus 222 t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~ 280 (458)
||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++++...
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999887543
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=179.91 Aligned_cols=137 Identities=20% Similarity=0.174 Sum_probs=83.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCC------CCC-CCcHHHHHHhC---CCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 012683 123 GATALHHSAGIGNIELLTYLLSKGAEVDS------ESD-AGTPLIWAAGH---GQQEAVKVLLEHHANPNAETEDNITPL 192 (458)
Q Consensus 123 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~------~~~-~~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l 192 (458)
+.++|+.|+..|+.+.++.|++.|++++. .+. +.||||+|+.. ++.+++++|+++|++++..|..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 34556666666666666666666666654 222 22666666665 666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683 193 LSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265 (458)
Q Consensus 193 ~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 265 (458)
|+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++ .|.||||+|+.+|+
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 6666666666666666666666655 5566666666666666666666666554 45666666666654
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=3.2e-22 Score=158.76 Aligned_cols=110 Identities=26% Similarity=0.332 Sum_probs=88.7
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683 53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG 132 (458)
Q Consensus 53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 132 (458)
+..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 45677888888888888888888886 88888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHH
Q 012683 133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAA 163 (458)
Q Consensus 133 ~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~ 163 (458)
.|+.+++++|++.|++++..+..+ |||++|.
T Consensus 83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 888888888888877776665544 7777773
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=5.7e-22 Score=182.34 Aligned_cols=143 Identities=23% Similarity=0.247 Sum_probs=121.1
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCC
Q 012683 86 QDEDGETPLLHAARQGHTETAKYLFEHGANPTI------PSNLGATALHHSAGI---GNIELLTYLLSKGAEVDSESDAG 156 (458)
Q Consensus 86 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~ 156 (458)
......++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. ++.+++++|++.|++++..+..+
T Consensus 147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G 226 (301)
T 2b0o_E 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 226 (301)
T ss_dssp CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence 344566889999999999999999999999887 588899999999987 88999999999999998777555
Q ss_pred -cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcH
Q 012683 157 -TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGST 233 (458)
Q Consensus 157 -t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~ 233 (458)
||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|++.|++ .|.||||+|+..|+.
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC--------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999999876 378999999998864
No 104
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=7e-22 Score=174.10 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=56.4
Q ss_pred cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCcHHHHHHhcCcHH
Q 012683 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA-GANANIV-AGGATPLHIAADIGSTE 234 (458)
Q Consensus 157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~-~~g~t~L~~A~~~~~~~ 234 (458)
||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |++++.. ..|.||||+|+..|+.+
T Consensus 75 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~ 154 (222)
T 3ehr_A 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYAD 154 (222)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHH
T ss_pred cccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHH
Confidence 444444444444444444444444444444444444444444444444444444 4444444 34555555555555555
Q ss_pred HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS 277 (458)
Q Consensus 235 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 277 (458)
+|++|+++|++++.+|..|+||||+|+..++.++++.|+..+.
T Consensus 155 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred HHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 5555555555555555555555555555555555555555444
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=6.8e-21 Score=142.87 Aligned_cols=93 Identities=45% Similarity=0.659 Sum_probs=86.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683 55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134 (458)
Q Consensus 55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 134 (458)
+|.||||+|+..|+.+++++|++. |.+++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 478999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCC
Q 012683 135 NIELLTYLLSKGAE 148 (458)
Q Consensus 135 ~~~~~~~Ll~~~~~ 148 (458)
+.+++++|++.|++
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999998864
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=2.4e-20 Score=169.58 Aligned_cols=133 Identities=19% Similarity=0.216 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhh-hhhcccCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCCCC
Q 012683 12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTV-ADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQD 87 (458)
Q Consensus 12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~-~~~~~~~g~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~ 87 (458)
.....+|+.|+..||++.++.+++. +.++...+ .+..+..|.||||+|+.. |+.+++++|++. |++++..|
T Consensus 128 ~~~l~~l~~a~~~~d~~~~~~ll~~----g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d 202 (278)
T 1dcq_A 128 AAKLHSLCEAVKTRDIFGLLQAYAD----GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQT 202 (278)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT----TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCC
T ss_pred chhhhhhhhHhhhcccHHHHHHHHh----hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccC
Confidence 4567899999999999999999886 33332222 455688899999999999 899999999998 99999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 012683 88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149 (458)
Q Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 149 (458)
..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.|++.
T Consensus 203 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 203 GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988753
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=1.1e-20 Score=177.71 Aligned_cols=122 Identities=35% Similarity=0.488 Sum_probs=116.2
Q ss_pred cHHHHHHhC-CCHHHHHHHHhcCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCc
Q 012683 157 TPLIWAAGH-GQQEAVKVLLEHHANPNAET--EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGS 232 (458)
Q Consensus 157 t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~ 232 (458)
|+||.|+.. ++.++++.|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+
T Consensus 201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~ 280 (368)
T 3jue_A 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH 280 (368)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCc
Confidence 799999999 99999999999999999988 88999999999999999999999999999987 779999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683 233 TEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE 278 (458)
Q Consensus 233 ~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 278 (458)
.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+..+..
T Consensus 281 ~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999977643
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.2e-20 Score=141.43 Aligned_cols=91 Identities=42% Similarity=0.667 Sum_probs=77.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683 187 DNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265 (458)
Q Consensus 187 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 265 (458)
+|+||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 4778888888888888888888888888877 678889999999999999999999898888888889999999999999
Q ss_pred HHHHHhhcCCCC
Q 012683 266 REAVEILFPLTS 277 (458)
Q Consensus 266 ~~~v~~Ll~~~~ 277 (458)
.+++++|+++++
T Consensus 81 ~~~~~~Ll~~ga 92 (93)
T 1n0q_A 81 LEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999998887764
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=1.3e-20 Score=177.14 Aligned_cols=120 Identities=24% Similarity=0.362 Sum_probs=64.0
Q ss_pred CcHHHHHHHc-CCHHHHHHHHHhCCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683 57 RGALHFAARE-GKTDVCKYLLEELKLDVDTQD--EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133 (458)
Q Consensus 57 ~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 133 (458)
.|+||.|+.. |++++++.|++. |++++..+ ..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 3455555555 555555555554 55555554 4555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhc
Q 012683 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177 (458)
Q Consensus 134 ~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~ 177 (458)
|+.+++++|+++|++++..+..+ ||||+|+..++.+++++|+..
T Consensus 279 g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~ 323 (368)
T 3jue_A 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323 (368)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 55555555555555554444333 555555555555555555443
No 110
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.83 E-value=4.7e-20 Score=153.79 Aligned_cols=131 Identities=23% Similarity=0.291 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc------------------CCCchhHHHhHHHHHHhhCCHHHHHH
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF------------------DPSDATLLSNRSLCWIRLGQAEHALA 389 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~ 389 (458)
++..+.+..++..|+.+++.|+|++|+..|++++++ +|.+..+|+++|.|+.++|+|++|+.
T Consensus 5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 455678999999999999999999999999999999 77778999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHHhhhhhcCCCC
Q 012683 390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK-ELVFAFREAVEAGRKFHGTDKK 458 (458)
Q Consensus 390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~ 458 (458)
+|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++ .+...+..+...+++..+++++
T Consensus 85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~ 154 (162)
T 3rkv_A 85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRV 154 (162)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 8899999999999888877653
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=7.9e-20 Score=180.42 Aligned_cols=124 Identities=24% Similarity=0.274 Sum_probs=63.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHH---cCCHHHHHHHHhCCCCCCCCCCCC-cHHHH
Q 012683 92 TPLLHAARQGHTETAKYLFEHGANPTIP------SNLGATALHHSAG---IGNIELLTYLLSKGAEVDSESDAG-TPLIW 161 (458)
Q Consensus 92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~---~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~ 161 (458)
+.||.|+..|+.++|+.|++.|++++.. +..|.||||+|+. .|+.+++++|++.|++++..+..+ ||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 3455555555555555555555555444 4455555555543 445555555555555554444333 55555
Q ss_pred HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 012683 162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN 215 (458)
Q Consensus 162 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 215 (458)
|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 214 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp HTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 555555555555555555555555555555555555555555555555555544
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=1e-19 Score=179.64 Aligned_cols=134 Identities=22% Similarity=0.184 Sum_probs=116.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCCCCCCC------CCCCCcHHHHHHH---cCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 012683 57 RGALHFAAREGKTDVCKYLLEELKLDVDTQ------DEDGETPLLHAAR---QGHTETAKYLFEHGANPTIPSNLGATAL 127 (458)
Q Consensus 57 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~------~~~g~t~L~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 127 (458)
.+.||.|+..|+.++|+.|++. |++++.. +..|.||||+||. .|+.+++++|+++|++++..|..|.|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 4679999999999999999998 9999877 8899999999977 8999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 012683 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197 (458)
Q Consensus 128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~ 197 (458)
|+|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++. +|+|.+..
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 99999999999999999999999887766 999999999999999999999999876 46665543
No 113
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.82 E-value=2.3e-20 Score=150.86 Aligned_cols=122 Identities=19% Similarity=0.095 Sum_probs=113.7
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-------chh-----HHHhHHHHHHhhCCHHHHHHHHHHHHHh-
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-------DAT-----LLSNRSLCWIRLGQAEHALADAKACRAL- 397 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~a~~~- 397 (458)
...+..++..|+.+++.|+|++|+..|++||+++|+ +.. +|+++|.++.++|+|++|+.+|++||++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999999999 433 9999999999999999999999999999
Q ss_pred ------CCCChHHH----HHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 398 ------RPDWPKAC----YREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 398 ------~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++..+...+..+.+.+...
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~ 152 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR 152 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999998888888887766543
No 114
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=6.5e-20 Score=143.46 Aligned_cols=104 Identities=35% Similarity=0.481 Sum_probs=81.5
Q ss_pred hcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683 51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130 (458)
Q Consensus 51 ~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 130 (458)
.+|.+|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 4567788888888888888888888876 778888888888888888888888888888888888887777788888888
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCC
Q 012683 131 AGIGNIELLTYLLSKGAEVDSESDA 155 (458)
Q Consensus 131 ~~~~~~~~~~~Ll~~~~~~~~~~~~ 155 (458)
+..++.+++++|+++|++++..+..
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~ 107 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWG 107 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCC
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCcc
Confidence 8777777777777777777654443
No 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.6e-18 Score=137.85 Aligned_cols=118 Identities=28% Similarity=0.363 Sum_probs=113.7
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..++.++..|..++..|+|++|+..|+++++++|+++.+|+++|.++.++|++++|+.+|+++++++|+++.+|+.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHHh
Q 012683 412 LRLLEKFDEAANAFYEGVTLD------PENKELVFAFREAVEAG 449 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~ 449 (458)
+..+|++++|+..|+++++++ |+++.++..+..+..++
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999 99999999999887654
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.79 E-value=1.4e-18 Score=142.11 Aligned_cols=108 Identities=10% Similarity=-0.021 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
.....++.+...|..+++.|+|++|+..|+++++++|+++.+|+++|.++..+|+|++|+..|++|++++|+++.+|+++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 33567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCcH
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPENK 436 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 436 (458)
|.++..+|++++|+.+|++++++.|+.+
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999875
No 117
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=2.5e-19 Score=140.12 Aligned_cols=107 Identities=38% Similarity=0.516 Sum_probs=76.5
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHH
Q 012683 85 TQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAA 163 (458)
Q Consensus 85 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~ 163 (458)
.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 356677788888888888888888888887777777777777777777777777777777777766555433 6777777
Q ss_pred hCCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 012683 164 GHGQQEAVKVLLEHHANPNAETEDNITP 191 (458)
Q Consensus 164 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~ 191 (458)
..++.+++++|+++|++++..+..|.+|
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 7777777777777777766666666655
No 118
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.78 E-value=2.4e-18 Score=136.93 Aligned_cols=115 Identities=24% Similarity=0.323 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh------
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP------ 402 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~------ 402 (458)
...+.+.++++.|+.+++.|+|++|++.|++|++++|+++.+|+++|.+|.++|+|++|+.+|+++++++|++.
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683 403 -KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444 (458)
Q Consensus 403 -~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 444 (458)
.+|+++|.++..+|++++|++.|++++...|+ ++....+..
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 58899999999999999999999999998886 555444443
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.77 E-value=1.6e-18 Score=142.32 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=112.7
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
.+....++..|..|++.|+|++|++.|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|+++.+|+++|.
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE 107 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHH-HHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 411 ALRLLEKFDEAANA-FYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 411 ~~~~~~~~~~A~~~-~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
++...|++++|.+. ++++++++|+++.++..++.++...|+
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999988776 589999999999999999988876553
No 120
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.76 E-value=4.6e-18 Score=141.95 Aligned_cols=124 Identities=25% Similarity=0.388 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
...+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+|+++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHH--HHHHHHHHHHHhhhhhc
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKE--LVFAFREAVEAGRKFHG 454 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~l~~~~~~~~~~~~ 454 (458)
++..+|++++|+.+|+++++++|++.. +...+..+..++++...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR 133 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988 55556666666665543
No 121
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=5.3e-18 Score=131.24 Aligned_cols=98 Identities=34% Similarity=0.406 Sum_probs=85.4
Q ss_pred chhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 012683 44 LSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123 (458)
Q Consensus 44 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g 123 (458)
..+......+.+|.|+||+|+..|+.+++++|++. |.+++..|..|.||||+|+..|+.+++++|+++|++++..|..|
T Consensus 12 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g 90 (110)
T 2zgd_A 12 GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90 (110)
T ss_dssp C---------CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CCCCcccccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Confidence 44555666788999999999999999999999987 99999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHH
Q 012683 124 ATALHHSAGIGNIELLTYL 142 (458)
Q Consensus 124 ~t~L~~A~~~~~~~~~~~L 142 (458)
.||||+|+..|+.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 9999999999999999876
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.75 E-value=1.4e-17 Score=136.27 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
...+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
++..+|++++|+..|+++++++|+++........+...++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 138 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999887766555555554443
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.75 E-value=9.2e-18 Score=136.47 Aligned_cols=124 Identities=16% Similarity=0.133 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
.......+...|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+|
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
.++..+|++++|+..|+++++++|+++........+...++...
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT 137 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877777777666665543
No 124
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.74 E-value=6e-17 Score=139.62 Aligned_cols=132 Identities=23% Similarity=0.317 Sum_probs=123.5
Q ss_pred CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----------------hHHHhHHHHHHhhCCHHHHHH
Q 012683 326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----------------TLLSNRSLCWIRLGQAEHALA 389 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~ 389 (458)
..+...+.+..+...|..++..|+|++|+..|++++++.|.++ .+++++|.++.++|++++|+.
T Consensus 30 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 109 (198)
T 2fbn_A 30 TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID 109 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3456677899999999999999999999999999999999987 899999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCCC
Q 012683 390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDK 457 (458)
Q Consensus 390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 457 (458)
+|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++..++.++..+++..+.++
T Consensus 110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988877653
No 125
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=7.3e-18 Score=130.45 Aligned_cols=91 Identities=35% Similarity=0.501 Sum_probs=82.6
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260 (458)
Q Consensus 182 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A 260 (458)
...+.+|.|+||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 345778899999999999999999999999999877 6799999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHhh
Q 012683 261 AARGNREAVEIL 272 (458)
Q Consensus 261 ~~~~~~~~v~~L 272 (458)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 999999999987
No 126
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.74 E-value=4.8e-18 Score=139.51 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=108.1
Q ss_pred hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH
Q 012683 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD 419 (458)
Q Consensus 340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 419 (458)
.|..+..+|++++|++.|++++...|+++..++++|.+|.++|+|++|++.|+++++++|+++.+|+.+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 420 EAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 420 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
+|+..|+++++++|+++.++..++.++..+++..+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999887654
No 127
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=4.7e-17 Score=142.50 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=106.4
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+..+...|..+++.|++++|+..|+++++++|+++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45677888888888899999999999998888888888899999888999999999999999999988888888998888
Q ss_pred Hh-----------hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LL-----------EKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.. |++++|+..|+++++++|+++.++..++.++..+|+++++
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 88 8899999988888888888888888888888888877653
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=6.6e-17 Score=151.36 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=124.8
Q ss_pred CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---------------hhHHHhHHHHHHhhCCHHHHH
Q 012683 324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---------------ATLLSNRSLCWIRLGQAEHAL 388 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~ 388 (458)
..........+..+...|..+++.|+|++|+..|++++++.|.+ ..+|+++|.|+.++|++++|+
T Consensus 137 ~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 216 (336)
T 1p5q_A 137 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216 (336)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34455667789999999999999999999999999999999998 599999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 389 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++
T Consensus 217 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 217 ESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887765
No 129
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.72 E-value=7.2e-17 Score=140.32 Aligned_cols=119 Identities=11% Similarity=0.011 Sum_probs=113.7
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHh----------------HHHHHHhhCCHHHHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSN----------------RSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
.++.+..+|..++..|+|++|+..|+++++++|+++.+|+. +|.++.++|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 397 LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 397 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++...++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999999999865543
No 130
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.70 E-value=8.2e-17 Score=164.47 Aligned_cols=124 Identities=16% Similarity=0.199 Sum_probs=85.9
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..++++.++|..+.+.|++++|++.|++|++++|+++.+|+++|.+|.++|++++|+..|++|++++|+++.+|+++|.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34566667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+..+|++++|++.|+++++++|++..++.+++.++..+|+++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA 130 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777777777777777777776666665543
No 131
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.70 E-value=1.6e-16 Score=127.98 Aligned_cols=124 Identities=28% Similarity=0.384 Sum_probs=116.6
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..++++++++|+++.+++.+|.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHHhhhhhcCC
Q 012683 413 RLLEKFDEAANAFYEGVTLDPE-----NKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
...|++++|+..|++++.++|+ +..+...+..+..+.....+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e~~ 136 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEER 136 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998 8889999999888776655543
No 132
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.70 E-value=1.4e-16 Score=125.41 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=93.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..++..|..+++.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++|++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHH
Q 012683 415 LEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
.|++++|+..|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998754
No 133
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.69 E-value=1.2e-16 Score=156.15 Aligned_cols=133 Identities=22% Similarity=0.346 Sum_probs=120.8
Q ss_pred CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---------------hhHHHhHHHHHHhhCCHHHHH
Q 012683 324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---------------ATLLSNRSLCWIRLGQAEHAL 388 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~ 388 (458)
..........+..+..+|..+++.|+|++|+..|++|+++.|.+ ..+|+++|.||.++|+|++|+
T Consensus 258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34456667889999999999999999999999999999999998 699999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683 389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 389 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
.+|++|++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.++..+++..+++
T Consensus 338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998876543
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.69 E-value=7.1e-16 Score=122.51 Aligned_cols=125 Identities=29% Similarity=0.421 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
+.....+..+...|..++..|+|++|+..|+++++..|.++.+++.+|.++...|++++|+..+.++++++|+++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34457788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
+|.++...|++++|+..|+++++.+|++..++..++.++..+++.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999988765
No 135
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.69 E-value=1.7e-16 Score=150.24 Aligned_cols=131 Identities=18% Similarity=0.316 Sum_probs=123.7
Q ss_pred CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc----------------cCCCchhHHHhHHHHHHhhCCHHHHHH
Q 012683 326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID----------------FDPSDATLLSNRSLCWIRLGQAEHALA 389 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~ 389 (458)
..+.....+..+...|..+++.|+|++|+..|+++++ ++|.+..+|+++|.|+.++|++++|+.
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 3566778899999999999999999999999999999 778889999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683 390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
+|++|++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..++.++..+++..+++
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988876654
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-16 Score=125.19 Aligned_cols=119 Identities=32% Similarity=0.532 Sum_probs=114.8
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
....++...|..++..|+|++|+..|+++++.+|.+..+++++|.++...|++++|+..++++++++|+++.+++.+|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
+...|++++|+..|+++++.+|++..++..++.++..++
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988765
No 137
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.68 E-value=1.3e-15 Score=118.71 Aligned_cols=115 Identities=30% Similarity=0.525 Sum_probs=110.7
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.+..+...|..++..|+|++|+..|+++++..|.++.+++++|.++...|++++|+..++++++++|+++.+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
...|++++|+..|+++++.+|+++.++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999888753
No 138
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.67 E-value=4e-16 Score=159.43 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=118.7
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+.++.++|..+.+.|++++|++.|++|++++|+++.+|+++|.++..+|++++|++.|++|++++|+++.+|+++|.++.
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~ 122 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 122 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.+|++++|++.|+++++++|++..++.+++.++..++++.++
T Consensus 123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999999999999999999999887764
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.66 E-value=2.5e-15 Score=125.01 Aligned_cols=127 Identities=31% Similarity=0.472 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
....+.+..+...|..++..|+|++|+..|+++++..|.++.+++++|.++...|++++|+..++++++++|.++.+++.
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH--HHHhhhhhc
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA--VEAGRKFHG 454 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~~~~~~ 454 (458)
+|.++...|++++|+..|+++++++|++..++..++.+ +...+++.+
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988666666 555555443
No 140
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.66 E-value=3.9e-16 Score=125.78 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=96.0
Q ss_pred hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA----------EHALADAKACRALRPDWPKACYREGAALRLL 415 (458)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 415 (458)
+.+.|++|+..|+++++++|+++.+|+++|.++..++++ ++|+..|++|++++|+++.+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 557899999999999999999999999999999999876 5999999999999999999999999999988
Q ss_pred h-----------hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 416 E-----------KFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 416 ~-----------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
| +|++|+++|++|++++|++..++..+..+.+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence 5 99999999999999999999998888776543
No 141
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=6.4e-16 Score=135.22 Aligned_cols=121 Identities=19% Similarity=0.189 Sum_probs=73.2
Q ss_pred HHHHHHhhhHHHhh-----------ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683 334 AAEAKARGDEAFKQ-----------KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP 402 (458)
Q Consensus 334 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 402 (458)
+..+...|..+... |++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++ +++
T Consensus 73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 34455566666666 666666666666666666666666666666666666666666666666666 666
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.+++.+|.++...|++++|+..|+++++++|+++.++..++.++..+|+.+++
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 66666666666666666666666666666666666666666666666655544
No 142
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=5.9e-16 Score=146.81 Aligned_cols=124 Identities=10% Similarity=-0.002 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-HHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-AEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
...+..+...|..+...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|++|++++|+++.+|+++|
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 35567788888888888888888888888888888888888888888888886 88888888888888888888888888
Q ss_pred HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
.++..+|++++|+.+|+++++++|++..++.+++.++..++++++
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHH
Confidence 888888888888888888888888888888888888888877654
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.65 E-value=1.2e-16 Score=130.74 Aligned_cols=103 Identities=11% Similarity=-0.023 Sum_probs=98.5
Q ss_pred HHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683 353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD 432 (458)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 432 (458)
+-..|+++++++|+++.+++++|.++.+.|++++|+..|++++.++|+++.+|+++|.++..+|+|++|+.+|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhhhcC
Q 012683 433 PENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 433 p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
|+++.++++++.++..+|+++++
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA 123 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKA 123 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999988765
No 144
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.65 E-value=1.5e-15 Score=133.76 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=114.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCC-CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP-SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
++.++..|..++..|+|++|+..|+++++++| .+..+++++|.++..+|++++|+..|+++++++|+++.+|+.+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 36799999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcH-------HHHHHHHHHHHHhhhhhcC
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENK-------ELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~~~~~~~ 455 (458)
..+|++++|+..|+++++++|+++ .++..++.++..+++++++
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 136 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA 136 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence 999999999999999999999999 6688888888877776543
No 145
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=2.4e-15 Score=127.72 Aligned_cols=123 Identities=18% Similarity=0.250 Sum_probs=93.1
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh---------------
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL--------------- 397 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------------- 397 (458)
.+..+...|..++..|+|++|++.|+++++++|+++.+++++|.++.++|++++|+..+.+++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45667788888888888888888888888888888888888888888877777777666666554
Q ss_pred -------------------CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 398 -------------------RPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 398 -------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+|+++.+++.+|.++..+|++++|++.|+++++++|+++.++..++.++.++++++++
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 5555666666777777777777777777777777777777777777777777766543
No 146
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.64 E-value=5.9e-16 Score=144.95 Aligned_cols=129 Identities=23% Similarity=0.318 Sum_probs=101.5
Q ss_pred CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----------------hHHHhHHHHHHhhCCHHH
Q 012683 324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----------------TLLSNRSLCWIRLGQAEH 386 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~ 386 (458)
....++..+.+..++..|+.+++.|+|++|+..|++++++.|.+. .+|+++|.|+.++|+|++
T Consensus 169 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~ 248 (338)
T 2if4_A 169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248 (338)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344467778899999999999999999999999999999999987 499999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 387 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
|+.+|+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|+++.++..++.+....+..
T Consensus 249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999886655443
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4e-15 Score=121.14 Aligned_cols=116 Identities=32% Similarity=0.427 Sum_probs=110.3
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
..+..+...|..++..|+|++|+..|+++++..|++ ..+++++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 456789999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
|.++...|++++|+..|+++++++|++..++..+..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999999988877743
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.63 E-value=3.5e-15 Score=118.66 Aligned_cols=117 Identities=15% Similarity=0.035 Sum_probs=107.0
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYRE 408 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~ 408 (458)
+.++..|..++..|+|++|+..|+++++..|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3467899999999999999999999999999988 799999999999999999999999999999999 8999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
|.++..+|++++|+..|+++++..|+++.+......+....++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999888777666554433
No 149
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.62 E-value=5.8e-15 Score=117.24 Aligned_cols=121 Identities=20% Similarity=0.322 Sum_probs=113.5
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------hHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW-------PKA 404 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~ 404 (458)
+.++.+...|..++..|+|++|+..|+++++..|.++.+++++|.++...|++++|+..+++++.+.|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999999999999999887 999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
++.+|.++...|++++|+..|++++...| ++.....++.+...+++..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998 6899999999988877654
No 150
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.7e-15 Score=143.72 Aligned_cols=118 Identities=9% Similarity=-0.041 Sum_probs=112.7
Q ss_pred HHHHHHHhhhHHHhhcc-HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKD-YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
....+..+|..+...|+ +++|+..|+++++++|++..+|+++|.++..+|++++|+..|++|++++|+++.+|+++|.+
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~ 209 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence 35778999999999996 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
+..+|++++|+.+|+++++++|++..++..++.++..++
T Consensus 210 ~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998843
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.61 E-value=1.9e-14 Score=113.13 Aligned_cols=117 Identities=26% Similarity=0.375 Sum_probs=112.2
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.+..+...|..++..|++++|+..|+++++..|.+..+++.+|.++...|++++|+..++++++++|.++.+++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
...|++++|+..|+++++.+|+++.++..++.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999987764
No 152
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.59 E-value=2e-15 Score=118.04 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=94.9
Q ss_pred hhccHHHHHHHHHHhhcc---CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHH
Q 012683 346 KQKDYLMAVDAYTQAIDF---DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAA 422 (458)
Q Consensus 346 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~ 422 (458)
..|+|++|+..|++++++ +|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 358999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 423 NAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 423 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
..|++++...|+++........+....+..+
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~ 112 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKLD 112 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776666655444443
No 153
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=1.9e-14 Score=122.07 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=98.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
...+...|..+...+++++|+..+.+++.+.|.+..++..+|.++.++|++++|++.|+++++++|+++.+|+++|.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 45577788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHH
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
.+|++++|++.|+++++++|+++.
T Consensus 153 ~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HCCCHHHHHHHHHHHHhCCccCHH
Confidence 999999999999999999998754
No 154
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.59 E-value=3.1e-15 Score=146.58 Aligned_cols=125 Identities=32% Similarity=0.483 Sum_probs=117.7
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
+.++.+...|..+++.|+|++|++.|++|++++|+++.+|+++|.++.++|++++|+..|++|++++|+++.+|+++|.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 55777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH--HHHhhhhhcCC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREA--VEAGRKFHGTD 456 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~~~~~~~~ 456 (458)
+..+|++++|++.|+++++++|++..++..++.+ +...++++++.
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 66667776654
No 155
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.59 E-value=2.2e-14 Score=126.27 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=112.9
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-------HHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-------KACYR 407 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~ 407 (458)
..+...|..++..|+|++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++ .+|+.
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 122 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLK 122 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999 77999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCC--cHHHHHHHHHHHHHhhhh
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPE--NKELVFAFREAVEAGRKF 452 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~ 452 (458)
+|.++...|++++|++.|+++++++|+ +..++..++.++..+++.
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999999887765
No 156
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.58 E-value=6e-15 Score=116.93 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=91.3
Q ss_pred HHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 358 TQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 358 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
.+...++|+.+..+.++|.++++.|+|++|+..|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcC
Q 012683 438 LVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 438 ~~~~l~~~~~~~~~~~~~ 455 (458)
++..++.++..+++++++
T Consensus 83 a~~~lg~~~~~~~~~~~A 100 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKA 100 (126)
T ss_dssp HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHH
Confidence 999999999999987764
No 157
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.56 E-value=9.6e-14 Score=120.44 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=96.0
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL- 415 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~- 415 (458)
....|..++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.+|+++|.+++..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 4559999999999999999999999999999999999999999999999999999999999999999998888877544
Q ss_pred ----------------------------------hhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 416 ----------------------------------EKFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 416 ----------------------------------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
|+|++|+.+|+++++++|+.. ....+..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i~ 200 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKIL 200 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHHH
Confidence 458899999999999999743 444455543
No 158
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.55 E-value=5.6e-14 Score=122.15 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=112.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
.++..++..|..++..|+|++|+..|++++ +| ++.+++++|.++..+|++++|+..|+++++++|+++.+++++|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 456678999999999999999999999996 33 788999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcH----------------HHHHHHHHHHHHhhhhhcC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENK----------------ELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~----------------~~~~~l~~~~~~~~~~~~~ 455 (458)
+...|++++|+..|++++++.|++. .++..++.++..+++++++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999999888776 9999999999998887654
No 159
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.55 E-value=7.1e-15 Score=120.11 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=97.3
Q ss_pred HHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683 355 DAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE 434 (458)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 434 (458)
..|+++++++|++..+++++|.++...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhhcC
Q 012683 435 NKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++.+++.++.++..+|+++++
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A 108 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEA 108 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHH
Confidence 999999999999999987764
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.54 E-value=3.1e-14 Score=129.68 Aligned_cols=102 Identities=31% Similarity=0.463 Sum_probs=99.4
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+..+...|..++..|+|++|+..|+++++.+|+++.+|+++|.++.++|++++|+.++++|++++|+++.+++++|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCc
Q 012683 414 LLEKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~ 435 (458)
.+|++++|+..|+++++++|++
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999998866
No 161
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.53 E-value=6.6e-14 Score=126.00 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=112.7
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACY 406 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~ 406 (458)
.++.++..|..+++.|+|++|+..|+++++..|.+ +.+++.+|.++.++|++++|+..|++++++.|++ +.+++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 36789999999999999999999999999999998 8999999999999999999999999999998854 67899
Q ss_pred HHHHHHHH--------hhhHHHHHHHHHHhhccCCCcHHHH-----------------HHHHHHHHHhhhhhcC
Q 012683 407 REGAALRL--------LEKFDEAANAFYEGVTLDPENKELV-----------------FAFREAVEAGRKFHGT 455 (458)
Q Consensus 407 ~~a~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~ 455 (458)
.+|.++.. .|++++|+..|+++++.+|+++.+. +.++.++...+++.++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 99999999 9999999999999999999987666 7778888888776543
No 162
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.53 E-value=1.1e-13 Score=110.16 Aligned_cols=121 Identities=23% Similarity=0.354 Sum_probs=114.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
+.+...|..++..|++++|+..|+++++..|.+..+++.+|.++...|++++|+..++++++.+|.++.+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.|++++|+..|++++...|++..++..++.++...++..++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence 99999999999999999999999999999999888776543
No 163
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.51 E-value=2.5e-14 Score=146.61 Aligned_cols=120 Identities=13% Similarity=-0.016 Sum_probs=93.0
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
+.+..+|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++|++++|+++.+|+++|.++..
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45677777777777888888888888877777777777888777777888888888888877777777777777777777
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+|++++ ++.|+++++++|++..++++++.++.++++++++
T Consensus 514 ~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 777777 7777777777777777777777777777766543
No 164
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.50 E-value=1.1e-13 Score=139.33 Aligned_cols=124 Identities=14% Similarity=0.078 Sum_probs=117.8
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
...+..+...|..++..|+|++|++.|+++++++|+++.+++++|.++..+|++++|++.|+++++++|+++.+++.+|.
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 99 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH 99 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh---hhhhc
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG---RKFHG 454 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~---~~~~~ 454 (458)
++...|++++|++.|+++++++|++..++..++.++..+ ++.++
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH
Confidence 999999999999999999999999999999999999998 66554
No 165
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=2.7e-13 Score=114.37 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=91.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
...+...|..++..|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++.+|.++.+++.+|.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
..|++++|+..|+++++..|++..++..++.++...++..+
T Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777777777777777777777766554
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.50 E-value=7.2e-14 Score=107.52 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=96.8
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHH
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD--WPKACYREGAALR 413 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~ 413 (458)
.+...|..++..|+|++|+..|++++++.|.+..+++++|.++..+|++++|+..++++++++|. ++.+++.+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred Hh-hhHHHHHHHHHHhhccCCCcH
Q 012683 414 LL-EKFDEAANAFYEGVTLDPENK 436 (458)
Q Consensus 414 ~~-~~~~~A~~~~~~a~~~~p~~~ 436 (458)
.+ |++++|++.+++++...|+++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccCCC
Confidence 99 999999999999999998753
No 167
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=3.4e-13 Score=113.81 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=105.9
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..+..+...|..++..|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++++.+|.++.+++.+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34667788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
+...|++++|++.|++++..+|++..++..++.++...+++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHH
Confidence 8888888888888888888888888888888888888777654
No 168
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.50 E-value=2.8e-13 Score=114.08 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=104.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHH-HHhhCCH--HHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLC-WIRLGQA--EHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
+..+...|..++..|+|++|+..|+++++++|+++.+++++|.+ +...|++ ++|+..++++++++|+++.+++.+|.
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 123 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999 8899999 99999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 445 (458)
++...|++++|+..|+++++.+|++......+..+
T Consensus 124 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 99999999999999999999999886655444443
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.49 E-value=5.7e-14 Score=113.86 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=94.3
Q ss_pred HHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683 355 DAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE 434 (458)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 434 (458)
..|+++++++|++...++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhhcC
Q 012683 435 NKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++.++..++.++..+++++++
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A 105 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGA 105 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999987654
No 170
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.49 E-value=1e-13 Score=116.86 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHH-hhCCHHHHHHHHHHHHHhCCCChHHH
Q 012683 327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWI-RLGQAEHALADAKACRALRPDWPKAC 405 (458)
Q Consensus 327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~ 405 (458)
.......+..+...|..+...|++++|+..|+++++..| ++..+..++.+.. ..++..+|+..++++++++|+++.++
T Consensus 33 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~ 111 (176)
T 2r5s_A 33 SDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA 111 (176)
T ss_dssp CHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHH
Confidence 333444455566666666666666666666666666666 5544444443322 22233446677777888899999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCc--HHHHHHHHHHHHHhhhhhcC
Q 012683 406 YREGAALRLLEKFDEAANAFYEGVTLDPEN--KELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 406 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~~ 455 (458)
+.+|.++...|++++|+..|+++++.+|+. ..++..++.++..+|+.+++
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 999999999999999999999999999875 66999999999998887643
No 171
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=9.2e-14 Score=136.33 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=115.2
Q ss_pred HHHHHhhhHHHhh---------ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhh--------CCHHHHHHHHHHHHHh
Q 012683 335 AEAKARGDEAFKQ---------KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRL--------GQAEHALADAKACRAL 397 (458)
Q Consensus 335 ~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~ 397 (458)
..+...|..++.. |+|++|+..|+++++++|+++.+|+++|.++..+ |++++|+..|++|+++
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 5678888999888 9999999999999999999999999999999999 9999999999999999
Q ss_pred CC---CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 398 RP---DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 398 ~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
+| +++.+|+++|.++...|++++|++.|+++++++|+++.++..++.++..+++.++
T Consensus 251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999999988654
No 172
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=135.41 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=116.3
Q ss_pred HHHHHHHhhhHHHhhccH-HHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDY-LMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
.+..+...|..++..|+| ++|+..|+++++++|+++.+|+++|.+|...|++++|+..|+++++++|+ ..+++.+|.+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence 367789999999999999 99999999999999999999999999999999999999999999999999 7999999999
Q ss_pred HHHh---------hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh--------hhhhcC
Q 012683 412 LRLL---------EKFDEAANAFYEGVTLDPENKELVFAFREAVEAG--------RKFHGT 455 (458)
Q Consensus 412 ~~~~---------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--------~~~~~~ 455 (458)
+..+ |++++|+..|+++++++|++..++..++.++..+ ++++++
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 9999 9999999999999999999999999999999988 776543
No 173
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.48 E-value=2.1e-13 Score=124.52 Aligned_cols=122 Identities=14% Similarity=0.093 Sum_probs=110.1
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHH----------------------
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALAD---------------------- 390 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~---------------------- 390 (458)
..+.+...|..+...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999998887644
Q ss_pred ------------HHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc--HHHHHHHHHHHHHhhhhhc
Q 012683 391 ------------AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN--KELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 391 ------------~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~ 454 (458)
++++++++|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++..+++.++
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 555577899999999999999999999999999999999999998 8999999999999887654
No 174
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.6e-13 Score=120.24 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=103.1
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhc--------------------------cCCCchhHHHhHHHHHHhhCCHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAID--------------------------FDPSDATLLSNRSLCWIRLGQAEH 386 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~ 386 (458)
.+..+...|..+...|++++|+..|+++++ ..|.++.+++.+|.++...|++++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 356777788888888888888888888877 667777888888888888888888
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 387 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
|+..|+++++++|.++.+++.+|.++...|++++|+..|+++++.+|++..++..++.++..+++..++
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888776543
No 175
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.48 E-value=2.4e-14 Score=120.77 Aligned_cols=119 Identities=8% Similarity=0.064 Sum_probs=106.7
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHh
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA-LRLL 415 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-~~~~ 415 (458)
+...+..++..|+|++|+..|+++++.+|.++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.+ +...
T Consensus 13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA 92 (177)
T ss_dssp SSTTTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 344566678899999999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred hhH--HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 416 EKF--DEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 416 ~~~--~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
|++ ++|+..|+++++.+|++..++..++.++..++++.++
T Consensus 93 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 134 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHH
Confidence 999 9999999999999999999999999999998887654
No 176
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.47 E-value=4.8e-13 Score=117.54 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=98.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH---HHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK---ACYR 407 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~ 407 (458)
++.+..+|..++..|+|++|+..|+++++..|.++ .+++.+|.++.++|++++|+..|++++++.|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 56788999999999999999999999999998864 78999999999999999999999999999999875 8999
Q ss_pred HHHHHHH------------------hhhHHHHHHHHHHhhccCCCcHHHH
Q 012683 408 EGAALRL------------------LEKFDEAANAFYEGVTLDPENKELV 439 (458)
Q Consensus 408 ~a~~~~~------------------~~~~~~A~~~~~~a~~~~p~~~~~~ 439 (458)
+|.++.. .|++++|+..|+++++.+|+++.+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999986 5799999999999999999987654
No 177
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=7.5e-13 Score=119.57 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=108.7
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
...+..+...|..++..|+|++|+..|+++++++|.++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 119 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 445 (458)
++...|++++|+..|+++++++|++......+..+
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999999999999999998766655544
No 178
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.47 E-value=3.9e-13 Score=104.46 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=94.9
Q ss_pred HHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 352 MAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 352 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
+|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--cHHHHHHHHHHHHHhhhhhc
Q 012683 432 DPE--NKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 432 ~p~--~~~~~~~l~~~~~~~~~~~~ 454 (458)
.|+ +......+...+..+++...
T Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~~ 107 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFLRRLAREDA 107 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhccccC
Confidence 874 56777788888887776544
No 179
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.47 E-value=4e-13 Score=126.95 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=117.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+..+...|..++..|++++|+..|++++++.|+++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 46688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCc-----------HHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPEN-----------KELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~-----------~~~~~~l~~~~~~~~~~~~~ 455 (458)
..|++++|+..|++++.+.|++ ..++..++.++..+|+.+++
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999999999999999999988 89999999999999988764
No 180
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.46 E-value=1.2e-13 Score=141.61 Aligned_cols=117 Identities=12% Similarity=-0.014 Sum_probs=110.6
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.+..+..+|..++..|+|++|+..|+++++++|+++.+|+++|.++.++|++++ +..|++|++++|+++.+|+++|.++
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
..+|++++|++.|+++++++|++..++.+++.++...+
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999975433
No 181
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=2.4e-13 Score=122.78 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=63.5
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW----PKACYREGAAL 412 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~a~~~ 412 (458)
+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++++ .|.+ ..+|+.+|.++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555555555 2222 22355555555
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
...|++++|+..|+++++.+|++..++..++.++..+++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence 55555555555555555555555555555555555555443
No 182
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=6.9e-13 Score=117.41 Aligned_cols=122 Identities=17% Similarity=0.159 Sum_probs=108.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
...+...|..++..|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++++++|+++.+++.+|.++.
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..|++++|+..|+++++.+|++..++..++.++..+++..++
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999999999999998888776543
No 183
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=9.9e-13 Score=114.77 Aligned_cols=121 Identities=15% Similarity=0.100 Sum_probs=68.5
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.+..+...|..++..|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++++++|.++.+++.+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHh-hhHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHhhhhh
Q 012683 413 RLL-EKFDEAANAFYEGVT--LDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 413 ~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
... |++++|+..|+++++ ..|++..++..++.++...++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 555 555555555555555 44444555555555555554443
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=6.6e-14 Score=107.86 Aligned_cols=96 Identities=24% Similarity=0.262 Sum_probs=87.3
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC------hHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW------PKACY 406 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~ 406 (458)
.++.+...|..++..|+|++|+..|+++++++|.++.+++++|.++..+|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHh
Q 012683 407 REGAALRLLEKFDEAANAFYEG 428 (458)
Q Consensus 407 ~~a~~~~~~~~~~~A~~~~~~a 428 (458)
.+|.++..+|++++|+..|++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887776543
No 185
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=9.6e-13 Score=116.49 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=116.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
...+...|..++..|++++|+..|+++++..|.+..+++.+|.++...|++++|+..++++++.+|.++.+++.+|.++.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..|++++|+..|+++++.+|++..++..++.++...+++.++
T Consensus 137 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999988877653
No 186
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.45 E-value=6.3e-13 Score=118.67 Aligned_cols=114 Identities=29% Similarity=0.384 Sum_probs=109.1
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..+..+...|..++..|+|++|+..|+++++..|.++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccC------CCcHHHHHHHHHH
Q 012683 412 LRLLEKFDEAANAFYEGVTLD------PENKELVFAFREA 445 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~ 445 (458)
+...|++++|+..|+++++++ |++..++..+..+
T Consensus 217 ~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 217 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999 9999988887765
No 187
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=8.2e-13 Score=117.83 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=61.9
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA--LRPDWPKACYREGAAL 412 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~ 412 (458)
..+...|..++..|++++|++.|+++++..|.+..+++.+|.++...|++++|+..++++++ ..|.++.+++.+|.++
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555 4444555555555555
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
...|++++|+..|+++++.+|++..++..++.++..+++..
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 55555555555555555555555555555555555444443
No 188
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.45 E-value=8e-13 Score=126.11 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=86.4
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..+...|..++..|++++|+..|+++++++|+++.+|+++|.++.+.|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
.|++++|+..|+++++.+|++..++..++.++.+.|++++
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777777777777777777666665543
No 189
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.45 E-value=1.4e-12 Score=113.25 Aligned_cols=104 Identities=15% Similarity=0.107 Sum_probs=99.4
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-----------
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP----------- 402 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----------- 402 (458)
+..+...|..++..|+|++|+..|+++++++|.++.+++++|.++..+|++++|+..|++++++.|.+.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 116 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 116 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence 457899999999999999999999999999999999999999999999999999999999999988877
Q ss_pred -----HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 403 -----KACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 403 -----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
.+++++|.++...|++++|+..|+++++++|++..
T Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999997654
No 190
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.44 E-value=9.1e-13 Score=123.66 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=107.1
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.++.+...|..++..|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhccCC---CcHHHHHHHH
Q 012683 413 RLLEKFDEAANAFYEGVTLDP---ENKELVFAFR 443 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~l~ 443 (458)
...|++++|+..|+++++.+| ++..++..++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 999999999999999999999 8898888874
No 191
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.44 E-value=7.1e-13 Score=119.22 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=108.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHh--------hCCHHHHHHHHHHHHHhCCCCh
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIR--------LGQAEHALADAKACRALRPDWP 402 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~a~~~~p~~~ 402 (458)
...+...|..++..|+|++|+..|+++++..|++ +.+++.+|.++.. +|++++|+..|+++++..|+++
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 5778999999999999999999999999998854 6789999999999 9999999999999999999987
Q ss_pred HHH-----------------HHHHHHHHHhhhHHHHHHHHHHhhccCCC---cHHHHHHHHHHHHHhh
Q 012683 403 KAC-----------------YREGAALRLLEKFDEAANAFYEGVTLDPE---NKELVFAFREAVEAGR 450 (458)
Q Consensus 403 ~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~ 450 (458)
.+. +.+|.++...|++++|+..|+++++..|+ .+.++..++.++..++
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 776 89999999999999999999999999998 5789999999998773
No 192
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.44 E-value=4.6e-13 Score=126.65 Aligned_cols=122 Identities=14% Similarity=0.147 Sum_probs=102.7
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
+..+...|..+...|++++|+..|++++++.|. ++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344566788899999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+...|++++|+..|+++++++|++..++..++.++..++++.++
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999988887654
No 193
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=1e-12 Score=125.35 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=80.7
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..+...|..+...|++++|+..|+++++++|+++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.++..
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
.|++++|+..|+++++.+|++..++..++.++...++.++
T Consensus 284 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666666666666666666666655543
No 194
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.43 E-value=7.3e-13 Score=125.24 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=113.6
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+..+...|..+...|++++|+..|++++++.|+++.+|+++|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCC------------cHHHHHHHHHHHHHhhhhhc
Q 012683 414 LLEKFDEAANAFYEGVTLDPE------------NKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~~~~~~ 454 (458)
..|++++|+..|+++++++|+ +..++..++.++..+++.+.
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 999999999999999999887 36789999999998887654
No 195
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.43 E-value=9.1e-13 Score=115.75 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=111.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh---HHHhHHHHHHh------------------hCCHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT---LLSNRSLCWIR------------------LGQAEHALADAK 392 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~~ 392 (458)
...+...|..+++.|+|++|+..|+++++..|+++. +++.+|.++.. .|++++|+..|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 467889999999999999999999999999999875 89999999986 578999999999
Q ss_pred HHHHhCCCChHHH-----------------HHHHHHHHHhhhHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHhhhh
Q 012683 393 ACRALRPDWPKAC-----------------YREGAALRLLEKFDEAANAFYEGVTLDPENK---ELVFAFREAVEAGRKF 452 (458)
Q Consensus 393 ~a~~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~ 452 (458)
++++..|+++.++ +.+|.++...|++++|+..|+++++..|+++ +++..++.++.++|+.
T Consensus 121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 9999999998665 6789999999999999999999999999986 7899999999999887
Q ss_pred hcC
Q 012683 453 HGT 455 (458)
Q Consensus 453 ~~~ 455 (458)
+++
T Consensus 201 ~~A 203 (225)
T 2yhc_A 201 AQA 203 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 196
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=1.3e-12 Score=116.43 Aligned_cols=123 Identities=13% Similarity=0.068 Sum_probs=112.7
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhc--cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAID--FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
....+...|..++..|++++|+..|+++++ ..|.+..+++.+|.++...|++++|+..++++++.+|.++.+++.+|.
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 183 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 345677889999999999999999999999 888889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++...|++++|+..|+++++..|++..++..++.++...++..++
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999999999999999999888877654
No 197
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.42 E-value=4e-12 Score=119.22 Aligned_cols=121 Identities=16% Similarity=0.201 Sum_probs=112.7
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
........|..++..|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|+++++++|+++.+++.+
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345567789999999999999999999999999987 4577899999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
|.++...|++++|+..|+++++++|+++.++..+..+...+++..
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998887654
No 198
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=2.1e-12 Score=112.66 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=71.7
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhh-CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHH
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRL-GQAEHALADAKACRA--LRPDWPKACYREGAAL 412 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~ 412 (458)
.+...|..++..|++++|+..|+++++..|.+..+++.+|.++... |++++|+..++++++ ..|....+++.+|.++
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666666666 666666666666666 4444455666666666
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
...|++++|+..|+++++.+|++..++..++.++...+++.
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 66666666666666666666666666666666655555544
No 199
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=1.4e-12 Score=117.68 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=112.0
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
.+..+...|..+...|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..|+++++++|.++.+++.+|...
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999555
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
+..+++++|+..|+++++.+|++..++..++.++..+++
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 566799999999999999999999999999999998876
No 200
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.40 E-value=2e-12 Score=119.84 Aligned_cols=122 Identities=15% Similarity=0.185 Sum_probs=116.6
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
...+...|..++..|++++|+..|+++++..|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.++.
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCC------------cHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPE------------NKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..|++++|+..|++++...|+ +..++..++.++..+++.+++
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999 899999999999999887654
No 201
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.40 E-value=2.7e-12 Score=119.00 Aligned_cols=121 Identities=11% Similarity=0.027 Sum_probs=116.1
Q ss_pred HHHHHhhhHHHhhc-cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQK-DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 335 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
..+...|..++..| ++++|+..|+++++++|.++.+|+.+|.++...|++++|+..+++++++.|++..+++.+|.++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 56888999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..|++++|+..|+++++.+|++..++..++.++...+++.++
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHH
Confidence 999999999999999999999999999999999998887654
No 202
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.40 E-value=2.7e-12 Score=124.84 Aligned_cols=123 Identities=19% Similarity=0.262 Sum_probs=109.6
Q ss_pred CCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683 323 LPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP 402 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 402 (458)
..+........++.+...|..+++.|+|++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|+++
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 94 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT 94 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 33444455577899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH---HHHHHHHHH
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENK---ELVFAFREA 445 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~ 445 (458)
.+++.+|.++...|++++|+..|+++++.+|++. .++..+..+
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 9999999999999999999999999999999998 777766443
No 203
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=121.25 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=76.5
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL 415 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 415 (458)
.+...|..++..|+|++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.+++.+|.++...
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred h-hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 416 E-KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 416 ~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
| ++++|+..|+++++.+|++..++..++.++...+++.+
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence 6 66666666666666666666666666666666555443
No 204
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.38 E-value=3.9e-12 Score=116.29 Aligned_cols=118 Identities=9% Similarity=-0.078 Sum_probs=72.4
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHH--HHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRS--LCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a--~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
+.+...|..+.+.|++++|+..|+++++.+|++.......+ ..+...|++++|+..|+++++..|+++.+++.+|.++
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH 210 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555666666666666666666666666666543322222 1222336666666666666666666666666666666
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
..+|++++|+..|+++++++|++++++.+++.++..+|+.
T Consensus 211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 6666666666666666666666666666666666665554
No 205
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.9e-12 Score=102.25 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=86.7
Q ss_pred CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683 365 PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444 (458)
Q Consensus 365 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 444 (458)
|..+..|+.+|.++.+.|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcC
Q 012683 445 AVEAGRKFHGT 455 (458)
Q Consensus 445 ~~~~~~~~~~~ 455 (458)
++..++++.++
T Consensus 81 ~~~~~~~~~~A 91 (126)
T 3upv_A 81 AQIAVKEYASA 91 (126)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHHhCHHHH
Confidence 99999887654
No 206
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.35 E-value=1.5e-11 Score=119.51 Aligned_cols=121 Identities=16% Similarity=0.201 Sum_probs=111.8
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
........|..++..|++++|+..|++++++.|.++ .++..+|.++.+.|++++|+..++++++++|+++.+|+.+
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344567779999999999999999999999999985 4889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
|.++...|++++|+..|+++++++|+++.++..++.+...+++..
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999998877766543
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.35 E-value=2.3e-12 Score=97.04 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=83.9
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCchh-HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT-LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE 416 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~ 416 (458)
..+|..++..|+|++|+..|+++++.+|+++. +++++|.++..+|++++|+..|+++++++|+++.+++. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56889999999999999999999999999999 99999999999999999999999999999999998855 8
Q ss_pred hHHHHHHHHHHhhccCCCcH
Q 012683 417 KFDEAANAFYEGVTLDPENK 436 (458)
Q Consensus 417 ~~~~A~~~~~~a~~~~p~~~ 436 (458)
.+.+++..|++++..+|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 88999999999988887653
No 208
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=1.5e-12 Score=117.61 Aligned_cols=115 Identities=23% Similarity=0.179 Sum_probs=106.2
Q ss_pred hhHHHhhccHHHHHHHHHHhhccC----CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFD----PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE 416 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~ 416 (458)
+..+...++|++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 344456689999999999999983 5678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 417 KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 417 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++++|+..|+++++++|++..++..++.++..++++.++
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999999999999999998887653
No 209
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.2e-11 Score=94.96 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=84.4
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHH
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVF 440 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~ 440 (458)
++..++++|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhhhhcC
Q 012683 441 AFREAVEAGRKFHGT 455 (458)
Q Consensus 441 ~l~~~~~~~~~~~~~ 455 (458)
.++.++..+++...+
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 999999999876654
No 210
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.34 E-value=6.7e-12 Score=98.40 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=83.4
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
..++.+|.++.+.|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..++..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcC
Q 012683 449 GRKFHGT 455 (458)
Q Consensus 449 ~~~~~~~ 455 (458)
+++++++
T Consensus 98 ~g~~~~A 104 (121)
T 1hxi_A 98 EHNANAA 104 (121)
T ss_dssp HHHHHHH
T ss_pred cCCHHHH
Confidence 9987654
No 211
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.33 E-value=8.3e-12 Score=117.83 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=109.2
Q ss_pred HhhhHHHhhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q 012683 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE 416 (458)
Q Consensus 339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~ 416 (458)
..|..+ ..|++++|+..|+++++..|. ++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 344444 889999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 417 KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 417 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++++|+..|+++++++|++..++..++.++..++++.++
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999887654
No 212
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.33 E-value=4.5e-12 Score=116.02 Aligned_cols=124 Identities=10% Similarity=-0.059 Sum_probs=109.3
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhh-CCHHHHHHHHHHHHHhCCCC---
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRL-GQAEHALADAKACRALRPDW--- 401 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p~~--- 401 (458)
..+..+.+.|..+...|+|++|+..|++|+++.|.. ..++.++|.+|... |++++|+..|++|+++.|..
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 457789999999999999999999999999987653 46899999999996 99999999999999998854
Q ss_pred ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH-------HHHHHHHHHHHhhhhhcC
Q 012683 402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE-------LVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~l~~~~~~~~~~~~~ 455 (458)
..++.++|.++..+|+|++|+..|++++++.|++.. ++..++.++..+++..++
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 567999999999999999999999999999987653 578888898888776543
No 213
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.33 E-value=2e-12 Score=102.37 Aligned_cols=89 Identities=13% Similarity=0.034 Sum_probs=79.5
Q ss_pred CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH-------HH
Q 012683 366 SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK-------EL 438 (458)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~ 438 (458)
+.+.++.++|.++++.|+|++|+..|++|++++|+++.+|+++|.+|..+|+|++|+++|+++++++|++. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999988764 46
Q ss_pred HHHHHHHHHHhhhhhc
Q 012683 439 VFAFREAVEAGRKFHG 454 (458)
Q Consensus 439 ~~~l~~~~~~~~~~~~ 454 (458)
+..++.++..++++.+
T Consensus 86 ~~~lg~~~~~~~~~~~ 101 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSL 101 (127)
T ss_dssp HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHH
Confidence 7777777777776654
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.33 E-value=7.6e-12 Score=94.43 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=78.6
Q ss_pred cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC--cHHHHH
Q 012683 363 FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE--NKELVF 440 (458)
Q Consensus 363 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~ 440 (458)
.+|+++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|++.|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999998764 566677
Q ss_pred HHHHHHHHhhhh
Q 012683 441 AFREAVEAGRKF 452 (458)
Q Consensus 441 ~l~~~~~~~~~~ 452 (458)
.+..++...+..
T Consensus 82 ~l~~~l~~~~~~ 93 (100)
T 3ma5_A 82 ELQDAKLKAEGL 93 (100)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHcccc
Confidence 777777766544
No 215
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.33 E-value=4.6e-12 Score=102.28 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=82.7
Q ss_pred hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHhhhHHHHHHHHHHhhcc----
Q 012683 368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPD-------WPK-----ACYREGAALRLLEKFDEAANAFYEGVTL---- 431 (458)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~a~~~---- 431 (458)
...+.++|..+.+.|+|++|+..|++|++++|+ +.. +|+++|.++..+|+|++|+.+|.+++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCcHHHH----HHHHHHHHHhhhhhcC
Q 012683 432 ---DPENKELV----FAFREAVEAGRKFHGT 455 (458)
Q Consensus 432 ---~p~~~~~~----~~l~~~~~~~~~~~~~ 455 (458)
+|++..+| ++++.++..+++++++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEA 121 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEA 121 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHH
Confidence 99999999 9999999999998764
No 216
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=1.7e-11 Score=97.25 Aligned_cols=101 Identities=26% Similarity=0.397 Sum_probs=96.5
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..+...|..++..|++++|+..|++++...|.++.+++.+|.++...|++++|+..++++++..|.++.+++.+|.++..
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCc
Q 012683 415 LEKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~ 435 (458)
.|++++|+..|++++..+|+.
T Consensus 116 ~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 116 QGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC
T ss_pred HccHHHHHHHHHHHHccCCCC
Confidence 999999999999999988863
No 217
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.32 E-value=1.3e-11 Score=91.04 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=48.1
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555555656555666666666666666666655555566666666666666666666666555555555555555555
Q ss_pred HH
Q 012683 447 EA 448 (458)
Q Consensus 447 ~~ 448 (458)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 218
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.4e-11 Score=121.77 Aligned_cols=107 Identities=25% Similarity=0.361 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
..+.++.++..|..+++.|+|++|+..|+++++.+| ++.+|+++|.++.++|++++|+..|+++++++|+++.+++.+|
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 80 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 356789999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 410 AALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
.++..+|++++|+..|++++..+|.+..
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 9999999999999999999999986543
No 219
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.31 E-value=4.6e-12 Score=127.40 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=87.4
Q ss_pred hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683 347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFY 426 (458)
Q Consensus 347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 426 (458)
.|++++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 427 EGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 427 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++++++|++..++..++.++..+++++++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A 110 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAA 110 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999887654
No 220
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.31 E-value=2.3e-11 Score=89.69 Aligned_cols=85 Identities=24% Similarity=0.314 Sum_probs=80.8
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..+..+...|..++..|+|++|+..|+++++..|.++.+++++|.++...|++++|+..++++++++|+++.+++.+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 012683 412 LRLLE 416 (458)
Q Consensus 412 ~~~~~ 416 (458)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98764
No 221
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.30 E-value=8.9e-12 Score=95.57 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=88.2
Q ss_pred cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC--cHHHHH
Q 012683 363 FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE--NKELVF 440 (458)
Q Consensus 363 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~ 440 (458)
++|+++.+++.+|.++...|++++|+..|+++++++|.++.+++.+|.++...|++++|+..|+++++.+|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHh-hhhhcC
Q 012683 441 AFREAVEAG-RKFHGT 455 (458)
Q Consensus 441 ~l~~~~~~~-~~~~~~ 455 (458)
.++.++..+ ++++++
T Consensus 81 ~l~~~~~~~~~~~~~A 96 (112)
T 2kck_A 81 AKADALRYIEGKEVEA 96 (112)
T ss_dssp HHHHHHTTCSSCSHHH
T ss_pred HHHHHHHHHhCCHHHH
Confidence 999999888 776653
No 222
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.30 E-value=1.1e-11 Score=102.98 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=88.1
Q ss_pred cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683 363 FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF 442 (458)
Q Consensus 363 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 442 (458)
..+.++..++.+|.++...|+|++|+..|+++++++|+++.+|+++|.++..+|+|++|+..|+++++++|++..++..+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcC
Q 012683 443 REAVEAGRKFHGT 455 (458)
Q Consensus 443 ~~~~~~~~~~~~~ 455 (458)
+.++..++++.++
T Consensus 86 g~~~~~~g~~~~A 98 (164)
T 3sz7_A 86 GLARFDMADYKGA 98 (164)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHccCHHHH
Confidence 9999999887654
No 223
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.29 E-value=1.1e-11 Score=123.21 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=113.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL 414 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 414 (458)
..+...|..++..|++++|+..|+++++..|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.|++++|+..|+++++.+|+++.++..++.++...+++.++
T Consensus 357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999988877653
No 224
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=7.7e-12 Score=113.05 Aligned_cols=124 Identities=16% Similarity=0.139 Sum_probs=113.9
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRAL------ 397 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 397 (458)
..+..+...|..++..|+|++|+..|++++++ .|....++.++|.++...|++++|+..|.+++.+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 56788999999999999999999999999987 3667889999999999999999999999999998
Q ss_pred --CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 398 --RPDWPKACYREGAALRLLEKFDEAANAFYEGVTL--------DPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 398 --~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+|....+++.+|.++...|++++|+..|+++++. .|....++..++.++..+++++++
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5778899999999999999999999999999998 777788999999999999887654
No 225
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.28 E-value=2.1e-11 Score=97.54 Aligned_cols=94 Identities=10% Similarity=0.005 Sum_probs=87.6
Q ss_pred ccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHH
Q 012683 362 DFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA 441 (458)
Q Consensus 362 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 441 (458)
...|.++..++.+|.++...|++++|+..|.+++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcC
Q 012683 442 FREAVEAGRKFHGT 455 (458)
Q Consensus 442 l~~~~~~~~~~~~~ 455 (458)
++.++..++++.++
T Consensus 83 l~~~~~~~~~~~~A 96 (137)
T 3q49_B 83 LGQCQLEMESYDEA 96 (137)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 99999999887654
No 226
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=4.7e-11 Score=116.87 Aligned_cols=122 Identities=11% Similarity=0.088 Sum_probs=106.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhcc---------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC------
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDF---------DPSDATLLSNRSLCWIRLGQAEHALADAKACRALR------ 398 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------ 398 (458)
+..+...|.++...|+|++|++.|++|+++ +|.....|.++|.+|..+|++++|+.++++++++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 455778999999999999999999999986 56667889999999999999999999999999873
Q ss_pred --CCChHHHHHHHHHHHHh--hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 399 --PDWPKACYREGAALRLL--EKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 399 --p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+..+.++..+|.++... ++|++|+++|+++++++|++++++..++.+...++...+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHH
Confidence 45678899999888765 4799999999999999999999999999998877665443
No 227
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.27 E-value=1.6e-11 Score=113.67 Aligned_cols=113 Identities=17% Similarity=0.238 Sum_probs=108.8
Q ss_pred HHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHH
Q 012683 343 EAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAA 422 (458)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~ 422 (458)
.+...|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 423 NAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 423 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..|+++++.+|++..++..++.++..++++.++
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999999999998887654
No 228
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.26 E-value=2.7e-11 Score=120.46 Aligned_cols=127 Identities=18% Similarity=0.245 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
......+..+...|..++..|++++|+..|+++++.+|+ +.+++.+|.++...|++++|+..|+++++++|+++.+++.
T Consensus 237 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 315 (537)
T 3fp2_A 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHH
Confidence 344566788999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+|.++...|++++|+..|+++++.+|++..++..++.++..++++.++
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999998887654
No 229
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.24 E-value=7.3e-11 Score=110.20 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
...+..+.+.|..+++.|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|++|++++|++..+++.+|.
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHH-HHHHHhhc
Q 012683 411 ALRLLEKFDEAA-NAFYEGVT 430 (458)
Q Consensus 411 ~~~~~~~~~~A~-~~~~~a~~ 430 (458)
++..+|++++|. ..|++.+.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999995 46666653
No 230
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.24 E-value=6.2e-11 Score=119.61 Aligned_cols=122 Identities=11% Similarity=-0.017 Sum_probs=116.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
+..+...|..+.+.|++++|++.|++++++.|.+..+|+.+|.++.+.|++++|++.|+++++..|+++.+|+.+|.++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..|++++|++.|+++++.+|+++.++..++.++.+.|+.+++
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999998887654
No 231
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=4.4e-11 Score=110.29 Aligned_cols=119 Identities=13% Similarity=-0.015 Sum_probs=80.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh-HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT-LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
..+...|..+...|++++|+..|++++++.|.++. +|.++|.++.+.|++++|+..|++|++.+|....+|...+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34666677777777777777777777777777665 67777777777777777777777777777766666665555433
Q ss_pred H-hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 414 L-LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 414 ~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
. .|++++|+..|+++++.+|+++.++..++.++..+|+..
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 2 567777777777777777777777766666666555443
No 232
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=8.7e-11 Score=107.42 Aligned_cols=107 Identities=18% Similarity=0.051 Sum_probs=91.8
Q ss_pred HHHHHHHHhhhHHHhh-ccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH-
Q 012683 332 KKAAEAKARGDEAFKQ-KDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK- 403 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~- 403 (458)
..+..+...|..+... |++++|+..|++|+++.|.. ..++.++|.++..+|++++|+..|++++++.|++..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 4467889999999997 99999999999999998754 467999999999999999999999999999987653
Q ss_pred ------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHH
Q 012683 404 ------ACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438 (458)
Q Consensus 404 ------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 438 (458)
+|+++|.++..+|++++|+.+|+++++++|+....
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 68999999999999999999999999999987654
No 233
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.22 E-value=8e-11 Score=107.52 Aligned_cols=118 Identities=12% Similarity=-0.000 Sum_probs=104.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH--H
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA--A 411 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~--~ 411 (458)
+..+...|..+...|++++|++.|++ |.++.++..+|.++.++|++++|++.++++++.+|++....+..+. .
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL 175 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH
Confidence 34588999999999999999999998 8999999999999999999999999999999999998754444442 2
Q ss_pred HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
+...|++++|+..|+++++.+|+++.++..++.++.++|++++++
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 334589999999999999999999999999999999999987653
No 234
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=3.2e-11 Score=108.96 Aligned_cols=124 Identities=18% Similarity=0.135 Sum_probs=111.8
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRAL------ 397 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 397 (458)
..+..+...|..++..|+|++|+..|++++++ .|....++.++|.++..+|++++|+..+++++++
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 56778999999999999999999999999998 4777899999999999999999999999999999
Q ss_pred --CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--------------------------------------------
Q 012683 398 --RPDWPKACYREGAALRLLEKFDEAANAFYEGVTL-------------------------------------------- 431 (458)
Q Consensus 398 --~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------------------------------------------- 431 (458)
.|....+++.+|.++...|++++|+..|++++++
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999975
Q ss_pred -----CCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 432 -----DPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 432 -----~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.|....++..++.++..++++.++
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A 271 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAA 271 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 255667888899998888877654
No 235
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.21 E-value=9.8e-11 Score=118.16 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=86.5
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------CCCC-hHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL------RPDW-PKACYR 407 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~-~~~~~~ 407 (458)
..+...|..+.+.|++++|++.|+++++..|.++.+|..+|.++.+.|++++|++.|++++++ +|+. ..+|+.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 345666777777777777777777777777777777777777777777777777777777776 5543 567777
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
+|.++...|++++|++.|+++++.+|+++.++..++.++...|++++
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 77777777777777777777777777777777777777777666554
No 236
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.19 E-value=5.5e-11 Score=117.46 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=86.2
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH------HHHHHH
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK------ACYREG 409 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~~a 409 (458)
.+...|..++..|++++|+..|+++++..|.++.+++++|.++...|++++|+..+++++.++|+++. +++.+|
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777776644 777777
Q ss_pred HHHHH---hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683 410 AALRL---LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 410 ~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
.++.. .|++++|+..|++++..+|++..++..++.++..++++.+
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 77777 7777777777777777777777777777777776666544
No 237
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.19 E-value=2.2e-10 Score=94.67 Aligned_cols=97 Identities=20% Similarity=0.151 Sum_probs=89.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH--HHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR--EGAA 411 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~--~a~~ 411 (458)
...+...|..++..|+|++|+..|+++++++|.++.+++++|.++..+|++++|+..|+++++++|.+..++.. ++..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46688999999999999999999999999999999999999999999999999999999999999999998855 4555
Q ss_pred HHHhhhHHHHHHHHHHhhc
Q 012683 412 LRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~ 430 (458)
+...|++++|+..+.++..
T Consensus 127 ~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 127 IVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccchHH
Confidence 8899999999999987654
No 238
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.18 E-value=2.2e-10 Score=104.77 Aligned_cols=125 Identities=10% Similarity=0.056 Sum_probs=106.5
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHH---HhCCCC
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACR---ALRPDW 401 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~p~~ 401 (458)
...+..+...|..+...|+|++|+..|++++++.+.. ..+++++|.+|..+|++++|+..|++|+ +..|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~ 191 (293)
T 2qfc_A 112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence 3455566778899999999999999999999875543 5689999999999999999999999999 556664
Q ss_pred h----HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhhhhhcC
Q 012683 402 P----KACYREGAALRLLEKFDEAANAFYEGVTLDPE------NKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 402 ~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~~~~ 455 (458)
. .+++++|.+|..+|+|++|+.+|++++.+.++ ...++..++.++..+++.+++
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 3 68999999999999999999999999987532 278899999999999887654
No 239
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.17 E-value=2.5e-10 Score=103.06 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=71.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
++.+...|..++..|++++|+..|+++++ |+++.+++++|.++.. .+++++|+..|+++++++ ++.+++.+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 45566666666666666666666666666 5556666666666666 666666666666666664 566666666
Q ss_pred HHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 410 AALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 410 ~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
.++.. .+++++|+..|+++++. +++.++..++.++..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHc
Confidence 66666 66666666666666655 356666666666655
No 240
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.17 E-value=6.1e-11 Score=97.28 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=107.3
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------TLLSNRSLCWIRLGQAEHALADAKACRALRPDW--- 401 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--- 401 (458)
...+..+...|..++..|+|++|+..|++++++.+... .++.++|.++...|++++|+..+++++++.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 46678899999999999999999999999999866533 589999999999999999999999999886543
Q ss_pred ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHhhhhhcC
Q 012683 402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLDP------ENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..+++.+|.++...|++++|+..+++++.+.+ ....++..++.++..+++..++
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 67899999999999999999999999997632 2256788888888888876543
No 241
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.17 E-value=7.2e-11 Score=112.41 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=108.0
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-------DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP- 402 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~- 402 (458)
...+..+...|..++..|++++|+..|++|+++.+. ...++.++|.++..+|++++|+..|++|+++.|...
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 456788999999999999999999999999987443 346899999999999999999999999998865443
Q ss_pred -----HHHHHHHHHHHHhhhHHHHHHHHHHhhc-----cC-CCcHHHHHHHHHHHHHhhhhhcC
Q 012683 403 -----KACYREGAALRLLEKFDEAANAFYEGVT-----LD-PENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 403 -----~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~-p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.+++++|.++..+|++++|+.+|+++++ .+ |....++..++.++..+++++++
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence 5899999999999999999999999998 56 78888999999999988887654
No 242
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.17 E-value=6.2e-11 Score=113.72 Aligned_cols=121 Identities=21% Similarity=0.244 Sum_probs=112.9
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----hHHHhHHHHHHhhCCHHHHHHHHHHHHHh------CCC
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHALADAKACRAL------RPD 400 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~ 400 (458)
...+..+...|..++..|+|++|+..|++++++.|+++ .+++.+|.++...|++++|+..+++++++ .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 56788899999999999999999999999999999986 58999999999999999999999999998 677
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhhh
Q 012683 401 WPKACYREGAALRLLEKFDEAANAFYEGVTL------DPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~ 451 (458)
...+++.+|.++...|++++|+..|++++.+ .|....++..++.++..+++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 8899999999999999999999999999988 56677899999999999888
No 243
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.16 E-value=1.7e-10 Score=91.80 Aligned_cols=104 Identities=11% Similarity=0.067 Sum_probs=94.6
Q ss_pred ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHhhhHHHHH
Q 012683 348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG---QAEHALADAKACRALR-P-DWPKACYREGAALRLLEKFDEAA 422 (458)
Q Consensus 348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~-p-~~~~~~~~~a~~~~~~~~~~~A~ 422 (458)
+....+.+.|.+.+..+|.+..+.|++|.|+.+.+ +.++++..++.+++.+ | +..+++|++|.+++++|+|++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34556777888888889999999999999999988 7779999999999999 7 67999999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 423 NAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 423 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
++++.+++.+|++.++......+..++.+
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887755
No 244
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.15 E-value=3.6e-10 Score=104.13 Aligned_cols=113 Identities=11% Similarity=-0.089 Sum_probs=100.0
Q ss_pred HHHHHHhhhHHHh-------hccH-------HHHHHHHHHhhc-cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683 334 AAEAKARGDEAFK-------QKDY-------LMAVDAYTQAID-FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR 398 (458)
Q Consensus 334 ~~~~~~~g~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 398 (458)
++.+...|..+.. .|++ ++|+..|++|++ +.|++..+|.++|.++...|++++|...|+++++++
T Consensus 50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 129 (308)
T 2ond_A 50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 129 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Confidence 4556666666653 4775 999999999999 799999999999999999999999999999999999
Q ss_pred CCChH-HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 399 PDWPK-ACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 399 p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
|.++. +|..+|.++.+.|++++|+..|+++++.+|....++...+.+.
T Consensus 130 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99987 9999999999999999999999999999999887776555543
No 245
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.15 E-value=8.9e-11 Score=114.91 Aligned_cols=102 Identities=21% Similarity=0.184 Sum_probs=92.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH--
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA-- 411 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-- 411 (458)
+..+...|..+++.|+|++|++.|+++++++|+++.+++++|.+|..+|++++|++.|++|++++|++..++..++.+
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 119 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHH-----------HhhccCCCc
Q 012683 412 LRLLEKFDEAANAFY-----------EGVTLDPEN 435 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~-----------~a~~~~p~~ 435 (458)
+...|++++|++.++ +++..+|+.
T Consensus 120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 120 IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 899999999999999 888887754
No 246
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-10 Score=91.48 Aligned_cols=92 Identities=18% Similarity=0.163 Sum_probs=87.3
Q ss_pred CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683 364 DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFR 443 (458)
Q Consensus 364 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 443 (458)
.|.....++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcC
Q 012683 444 EAVEAGRKFHGT 455 (458)
Q Consensus 444 ~~~~~~~~~~~~ 455 (458)
.++..++++.++
T Consensus 92 ~~~~~~~~~~~A 103 (133)
T 2lni_A 92 AALEAMKDYTKA 103 (133)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHHhhHHHH
Confidence 999998887654
No 247
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=9.8e-11 Score=107.41 Aligned_cols=124 Identities=18% Similarity=0.173 Sum_probs=112.7
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-----
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRALR----- 398 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----- 398 (458)
..+..+...|..++..|++++|+..|++++++ .|....+++++|.++...|++++|+..+++++++.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence 55778999999999999999999999999987 36667899999999999999999999999999884
Q ss_pred ---CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 399 ---PDWPKACYREGAALRLLEKFDEAANAFYEGVTL--------DPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 399 ---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
|....+++.+|.++...|++++|+..|++++.. .|....++..++.++..+++++++
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 667788999999999999999999999999998 777788999999999999887654
No 248
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=8.2e-11 Score=107.96 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-- 397 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-- 397 (458)
+.....+..+...|..++..|+|++|+..|++++++ .|....++..+|.++...|++++|+..+++++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334567889999999999999999999999999995 6677899999999999999999999999999988
Q ss_pred ------CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhhhhhcC
Q 012683 398 ------RPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD--------PENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 398 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.|....+++.+|.++...|++++|+..|++++++. |....++..++.++...+++.++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 46678899999999999999999999999999874 56678889999999888776543
No 249
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.12 E-value=3.8e-11 Score=102.98 Aligned_cols=112 Identities=7% Similarity=-0.047 Sum_probs=95.3
Q ss_pred HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh----------------HHHHH
Q 012683 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP----------------KACYR 407 (458)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----------------~~~~~ 407 (458)
....++|++|.+.+....+..+.....+..+|.++...|+|++|+..|++++++.|.++ .++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 34456777777777666666666788999999999999999999999999999999987 89999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+|.++..+|+|++|+.+|+++++++|++..++..++.++..+++++++
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 141 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHH
Confidence 999999999999999999999999999999999999999999887654
No 250
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.11 E-value=1.6e-10 Score=95.54 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=84.1
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRAL------------------RPDWPKACYREGAALRLLEKFDEAANAFYEG 428 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 428 (458)
....+..+|..+++.|+|++|+..|++|+.+ +|.+..+|+++|.++..+|+|++|+.+++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4678899999999999999999999999999 7788899999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 429 VTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+.++|++..+++.++.++..+++++++
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A 116 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEA 116 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHH
Confidence 999999999999999999999987754
No 251
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.11 E-value=2e-10 Score=105.00 Aligned_cols=119 Identities=10% Similarity=0.032 Sum_probs=101.4
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-------CC
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRAL-------RP 399 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~p 399 (458)
.+.-+...|..+...++|++|+..|++++++.+.. ..++.++|.+|..+|++++|+..|++|++. .+
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (293)
T 3u3w_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh
Confidence 34556668999999999999999999999965443 337999999999999999999999999953 23
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhh
Q 012683 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRK 451 (458)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~ 451 (458)
....+|+++|.+|..+|+|++|+..+++++++.+.. ..++..++.++..+++
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 345689999999999999999999999999876433 7899999999999984
No 252
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=8.1e-10 Score=110.09 Aligned_cols=118 Identities=8% Similarity=-0.130 Sum_probs=111.6
Q ss_pred HHHHHHHhhhHHHhhcc----------HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC--CHHHHHHHHHHHHHhCCC
Q 012683 333 KAAEAKARGDEAFKQKD----------YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG--QAEHALADAKACRALRPD 400 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~p~ 400 (458)
...++..++..+...++ ++++++.|.++++.+|.+..+|++|+.+..+++ ++++|++.++++++++|.
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 35678888888888887 999999999999999999999999999999999 779999999999999999
Q ss_pred ChHHHHHHHHHHHHhh-hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 401 WPKACYREGAALRLLE-KFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 401 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
+..+|+.++.+...+| .++++++++.++++.+|.+..+|..++.++..+.
T Consensus 142 N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence 9999999999999999 9999999999999999999999999999998863
No 253
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.11 E-value=4.8e-10 Score=86.51 Aligned_cols=89 Identities=17% Similarity=0.107 Sum_probs=84.3
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
.+..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++.+|++..++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcC
Q 012683 447 EAGRKFHGT 455 (458)
Q Consensus 447 ~~~~~~~~~ 455 (458)
..++++.++
T Consensus 83 ~~~~~~~~A 91 (118)
T 1elw_A 83 EFLNRFEEA 91 (118)
T ss_dssp HHTTCHHHH
T ss_pred HHHhhHHHH
Confidence 998876653
No 254
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=8.4e-10 Score=100.56 Aligned_cols=119 Identities=13% Similarity=-0.058 Sum_probs=108.6
Q ss_pred HHHHHhhhHH----Hhh---ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHH--HHHHHHHHHHHhCCCChHHH
Q 012683 335 AEAKARGDEA----FKQ---KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAE--HALADAKACRALRPDWPKAC 405 (458)
Q Consensus 335 ~~~~~~g~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~ 405 (458)
..+..++..+ ... ++++++++.+.++++.+|.+..+|++|+.+...+|+++ ++++.++++++.+|.+..+|
T Consensus 104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW 183 (306)
T 3dra_A 104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAW 183 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHH
Confidence 3455555555 444 78999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhhh------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 406 YREGAALRLLEK------FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 406 ~~~a~~~~~~~~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
..++.++..+++ ++++++++.+++..+|++..+++.+..++.+.++..
T Consensus 184 ~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~ 237 (306)
T 3dra_A 184 SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSI 237 (306)
T ss_dssp HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCCh
Confidence 999999999998 999999999999999999999999999999887643
No 255
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=3.9e-10 Score=102.41 Aligned_cols=91 Identities=10% Similarity=-0.004 Sum_probs=87.2
Q ss_pred CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683 365 PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444 (458)
Q Consensus 365 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 444 (458)
|.++..++.+|.++.+.|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcC
Q 012683 445 AVEAGRKFHGT 455 (458)
Q Consensus 445 ~~~~~~~~~~~ 455 (458)
++..++++.++
T Consensus 81 ~~~~~g~~~~A 91 (281)
T 2c2l_A 81 CQLEMESYDEA 91 (281)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHcCCHHHH
Confidence 99999887654
No 256
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.10 E-value=3.2e-10 Score=89.46 Aligned_cols=88 Identities=17% Similarity=0.091 Sum_probs=82.1
Q ss_pred hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHH
Q 012683 368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP---KACYREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFA 441 (458)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~ 441 (458)
+..++.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.++..
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 34688999999999999999999999999999998 899999999999999999999999999999999 899999
Q ss_pred HHHHHHHhhhhhcC
Q 012683 442 FREAVEAGRKFHGT 455 (458)
Q Consensus 442 l~~~~~~~~~~~~~ 455 (458)
++.++..+++++++
T Consensus 82 la~~~~~~g~~~~A 95 (129)
T 2xev_A 82 LGLSQYGEGKNTEA 95 (129)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHH
Confidence 99999998887654
No 257
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.09 E-value=5.6e-10 Score=83.69 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=72.3
Q ss_pred HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH--HHHHHHHH
Q 012683 371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPK-ACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV--FAFREAVE 447 (458)
Q Consensus 371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~--~~l~~~~~ 447 (458)
.+.+|.++...|++++|+..|+++++++|+++. +++.+|.++...|++++|+..|+++++++|++..++ ..+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 999999999999999999999999999999999988 55666555
Q ss_pred Hh
Q 012683 448 AG 449 (458)
Q Consensus 448 ~~ 449 (458)
..
T Consensus 83 ~~ 84 (99)
T 2kc7_A 83 FY 84 (99)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 258
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.2e-10 Score=91.63 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=88.9
Q ss_pred hccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 361 IDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 361 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
....|.+...++.+|.++...|++++|+..|+++++++|++ ..+++.+|.++...|++++|+..|+++++.+|++..
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 34567889999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcC
Q 012683 438 LVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 438 ~~~~l~~~~~~~~~~~~~ 455 (458)
++..++.++..++++.++
T Consensus 101 ~~~~~a~~~~~~~~~~~A 118 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQA 118 (148)
T ss_dssp HHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHH
Confidence 999999999998887654
No 259
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.09 E-value=1.6e-10 Score=93.10 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=64.8
Q ss_pred HHHHHHHHhhhHHHhhccH----------HHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-----------CHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDY----------LMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-----------QAEHALAD 390 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~ 390 (458)
..++.+...|..+...+++ ++|+..|++||+++|++..+|+++|.+|..+| ++++|++.
T Consensus 34 ~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~ 113 (158)
T 1zu2_A 34 LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQF 113 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHH
Confidence 3467888999999888775 59999999999999999999999999999885 89999999
Q ss_pred HHHHHHhCCCCh
Q 012683 391 AKACRALRPDWP 402 (458)
Q Consensus 391 ~~~a~~~~p~~~ 402 (458)
|++|++++|++.
T Consensus 114 ~~kAl~l~P~~~ 125 (158)
T 1zu2_A 114 FQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHHHhCCCCH
Confidence 999999999975
No 260
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.09 E-value=6.3e-10 Score=108.37 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=87.0
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
..+..+.++|..+++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.+
T Consensus 315 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHH-HHHhh
Q 012683 412 LRLLEKFDEAANA-FYEGV 429 (458)
Q Consensus 412 ~~~~~~~~~A~~~-~~~a~ 429 (458)
+..++++++|... |++.+
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998864 44433
No 261
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.08 E-value=4.3e-10 Score=87.33 Aligned_cols=76 Identities=16% Similarity=0.033 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACY 406 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 406 (458)
...+..+...|..++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..++++++..|+++....
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 4667889999999999999999999999999999999999999999999999999999999999999999987543
No 262
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.08 E-value=1.9e-10 Score=98.63 Aligned_cols=123 Identities=8% Similarity=0.020 Sum_probs=103.6
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhc------cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh---CC----
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAID------FDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL---RP---- 399 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~p---- 399 (458)
.+..+...|..++..|+|++|+..|+++++ ..|....+++++|.++...|++++|+..+.+++++ .+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 467889999999999999999999999999 44556789999999999999999999999999998 44
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC--Cc----HHHHHHHHHHHHHhhhhhcC
Q 012683 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDP--EN----KELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~----~~~~~~l~~~~~~~~~~~~~ 455 (458)
....+++++|.++...|++++|+..+++++.+.+ ++ ..++..++.++..+++++++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 3356789999999999999999999999986532 22 23457888888888876653
No 263
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.08 E-value=3.8e-10 Score=88.84 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=87.5
Q ss_pred ccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHH
Q 012683 362 DFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA 441 (458)
Q Consensus 362 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 441 (458)
+.+|.++..++.+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcC
Q 012683 442 FREAVEAGRKFHGT 455 (458)
Q Consensus 442 l~~~~~~~~~~~~~ 455 (458)
++.++..+++++++
T Consensus 86 ~~~~~~~~~~~~~A 99 (131)
T 2vyi_A 86 MGLALSSLNKHVEA 99 (131)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 99999988877653
No 264
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.08 E-value=2.3e-09 Score=97.94 Aligned_cols=125 Identities=8% Similarity=-0.023 Sum_probs=107.3
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------TLLSNRSLCWIRLGQAEHALADAKACRALRPDW--- 401 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--- 401 (458)
......+...+..++..|+|++|++.|.++++..+... ..++.+|.++...|++++|+..+.+++.+.+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 35567788999999999999999999999999877643 456789999999999999999999999876544
Q ss_pred ---hHHHHHHHHHHHHhhhHHHHHHHHHHhh---ccCCCcH----HHHHHHHHHHHHhhhhhcC
Q 012683 402 ---PKACYREGAALRLLEKFDEAANAFYEGV---TLDPENK----ELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~~l~~~~~~~~~~~~~ 455 (458)
..+|+.+|.+|...|+|++|+..|++++ +..|++. .++.+++.++..+++++++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHH
Confidence 5689999999999999999999999999 4456543 6889999999998887654
No 265
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=1.7e-09 Score=107.74 Aligned_cols=116 Identities=14% Similarity=0.031 Sum_probs=104.8
Q ss_pred HHHHHhhhHHHhhccH-HHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC----------HHHHHHHHHHHHHhCCCChH
Q 012683 335 AEAKARGDEAFKQKDY-LMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ----------AEHALADAKACRALRPDWPK 403 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~ 403 (458)
.+.........+.++| ++|++.|+++++++|++..+|++|+.++..+|+ +++|++.++++++.+|.+..
T Consensus 29 ~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~ 108 (567)
T 1dce_A 29 QSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108 (567)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 3334444445556655 678999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 404 ACYREGAALRLLE--KFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 404 ~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
+|++++.++..++ ++++|++.+.++++.+|.+..+|...+.++..++
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~ 157 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence 9999999999999 7799999999999999999999999999988877
No 266
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.07 E-value=3.4e-10 Score=104.68 Aligned_cols=119 Identities=20% Similarity=0.229 Sum_probs=106.7
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------CCCCh
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----ATLLSNRSLCWIRLGQAEHALADAKACRAL------RPDWP 402 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~ 402 (458)
....+...|..++..|+|++|+..|+++++..|.+ ..++..+|.++...|++++|+..+++++++ .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 35678899999999999999999999999999998 478899999999999999999999999988 55668
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhh
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRK 451 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~ 451 (458)
.+++.+|.++...|++++|+..|++++.+.|.. ..++..++.++..+++
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 899999999999999999999999999875533 3488889999888887
No 267
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=4.7e-10 Score=97.28 Aligned_cols=110 Identities=12% Similarity=-0.050 Sum_probs=68.7
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC----CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG----QAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
+.++...|..++..+++++|+..|+++++. .++.+++++|.+|.. + ++++|+..|++|++ +.++.+++++|
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg 92 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 455666666666666666666666666654 456666666666665 5 66666666666633 45666666666
Q ss_pred HHHHH----hhhHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHH
Q 012683 410 AALRL----LEKFDEAANAFYEGVTLDP--ENKELVFAFREAVEA 448 (458)
Q Consensus 410 ~~~~~----~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~ 448 (458)
.+|.. .+++++|+.+|+++++..| +++.++..++.++..
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 66655 5666666666666666655 236666666666554
No 268
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.06 E-value=2.3e-10 Score=108.88 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=103.3
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhcc---CCC---chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------h
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDF---DPS---DATLLSNRSLCWIRLGQAEHALADAKACRALRPDW-------P 402 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-------~ 402 (458)
.++..|..++..|+|++|+..|++|+++ .++ .+.+++++|.+|..+|++++|+..+.+|+++.+.. .
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3445999999999999999999999997 233 56899999999999999999999999999985433 4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH------HHHHHHHHHHHHhhhhhcC
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENK------ELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~l~~~~~~~~~~~~~ 455 (458)
.+++.+|.++..+|++++|+..|++++++.|... .++.+++.++..+++++++
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 6899999999999999999999999998754332 5889999999998887654
No 269
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.05 E-value=1.1e-09 Score=85.40 Aligned_cols=92 Identities=23% Similarity=0.349 Sum_probs=84.1
Q ss_pred CCCc-hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683 364 DPSD-ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF 442 (458)
Q Consensus 364 ~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 442 (458)
+|.. ..+++.+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4554 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcC
Q 012683 443 REAVEAGRKFHGT 455 (458)
Q Consensus 443 ~~~~~~~~~~~~~ 455 (458)
+.++...+++.++
T Consensus 84 a~~~~~~~~~~~A 96 (125)
T 1na0_A 84 GNAYYKQGDYDEA 96 (125)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhcCHHHH
Confidence 9999988876543
No 270
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.05 E-value=1.1e-09 Score=97.67 Aligned_cols=107 Identities=11% Similarity=-0.056 Sum_probs=94.6
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCc--hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--CC-ChHHHHHHHH
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD--ATLLSNRSLCWIRLGQAEHALADAKACRALR--PD-WPKACYREGA 410 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~-~~~~~~~~a~ 410 (458)
..+..|..+++.++|++|+..|++++...+.. ..+++++|.++..+|++++|+..|++++.-. |. .+.+.+++|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM 216 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 77899999999999999999999888764332 4589999999999999999999999998654 65 6789999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683 411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFR 443 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 443 (458)
++..+|+.++|...|++++..+|+ +.+...|.
T Consensus 217 aL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999999999999999 88776654
No 271
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.05 E-value=1.2e-10 Score=108.71 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=60.4
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA-LR 413 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-~~ 413 (458)
..+.+.|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999998 45
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHH
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
..+..+.+...|++++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 667888889999999999998764
No 272
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.05 E-value=5e-10 Score=99.75 Aligned_cols=122 Identities=13% Similarity=0.040 Sum_probs=107.5
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-CCC-hHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR-PDW-PKACYREGA 410 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~-~~~~~~~a~ 410 (458)
.-......+..+...|+|++|.+.|+..+...|.+. +.+.+|.++.+.++|++|+..|+++.+.. |.. ..+++.+|.
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence 345567789999999999999999999999999999 99999999999999999999999887753 221 458999999
Q ss_pred HHHHhhhHHHHHHHHHHhhccC--CC-cHHHHHHHHHHHHHhhhhhcC
Q 012683 411 ALRLLEKFDEAANAFYEGVTLD--PE-NKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 411 ~~~~~~~~~~A~~~~~~a~~~~--p~-~~~~~~~l~~~~~~~~~~~~~ 455 (458)
++..+|++++|+.+|++++... |. ..++++.++.++.++|+.+++
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA 227 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA 227 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998654 66 678999999999999988764
No 273
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.05 E-value=1.9e-09 Score=97.22 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=59.6
Q ss_pred HHHHHhhhHHHh----hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683 335 AEAKARGDEAFK----QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACY 406 (458)
Q Consensus 335 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~ 406 (458)
..+...|..+.. .+++++|+..|+++++.. ++.+++++|.+|.. .+++++|+..|+++++.+ ++.+++
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 150 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHH
Confidence 344455555555 555555555555555542 45555555555555 555555555555555544 445555
Q ss_pred HHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 407 REGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 407 ~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
.+|.++.. .+++++|+.+|+++++. +++.++..++.++..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 55555555 55555555555555544 234555555555554
No 274
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=1.2e-09 Score=91.70 Aligned_cols=83 Identities=12% Similarity=0.044 Sum_probs=77.2
Q ss_pred ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhhhHHHHHHHH
Q 012683 348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW--PKACYREGAALRLLEKFDEAANAF 425 (458)
Q Consensus 348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~ 425 (458)
++..+|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|++ +.+++.+|.++..+|++++|+..|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 344568999999999999999999999999999999999999999999999986 569999999999999999999999
Q ss_pred HHhhc
Q 012683 426 YEGVT 430 (458)
Q Consensus 426 ~~a~~ 430 (458)
++++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98873
No 275
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=2.1e-10 Score=105.71 Aligned_cols=104 Identities=18% Similarity=0.120 Sum_probs=83.0
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-----
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW----- 401 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----- 401 (458)
.+..+...|..+.. |+|++|+..|++|+++.|.. ..++.++|.++..+|+|++|+..|++++.+.|..
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 35667778888877 88888888888888876543 4678888888888888888888888888876544
Q ss_pred -hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHH
Q 012683 402 -PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438 (458)
Q Consensus 402 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 438 (458)
..+++.+|.++..+|++++|+..|++++ ++|+....
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 3477788888888888888888888888 88887643
No 276
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.04 E-value=3.7e-10 Score=107.77 Aligned_cols=119 Identities=20% Similarity=0.223 Sum_probs=107.4
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----hHHHhHHHHHHhhCCHHHHHHHHHHHHHh------CCCCh
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHALADAKACRAL------RPDWP 402 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~ 402 (458)
.+..+...|..++..|+|++|+..|++++++.|.++ .+++.+|.++...|++++|+..+++++.+ .|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 356788999999999999999999999999999884 68999999999999999999999999988 45567
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhh
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRK 451 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~ 451 (458)
.+++.+|.++...|++++|+..|++++.+.|.. ..++..++.++..+++
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 899999999999999999999999999886643 4588899999988888
No 277
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=4.9e-10 Score=106.44 Aligned_cols=125 Identities=11% Similarity=0.011 Sum_probs=104.7
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC----
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-------DATLLSNRSLCWIRLGQAEHALADAKACRALRP---- 399 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p---- 399 (458)
...+..+...|..++..|++++|+..|++|+++.+. ...+++++|.++..+|++++|+..|.+|+++.+
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 217 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence 466788899999999999999999999999986432 246788999999999999999999999988743
Q ss_pred --CChHHHHHHHHHHHHhhhHHHHHHHHHHhhc-----cCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 400 --DWPKACYREGAALRLLEKFDEAANAFYEGVT-----LDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 400 --~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
....+++++|.++...|++++|+..|++++. .+|....++..++.++..+++.+++
T Consensus 218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 280 (378)
T 3q15_A 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHH
Confidence 2246788999999999999999999999998 7888888899999999888876653
No 278
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.04 E-value=2.1e-09 Score=101.52 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
.....+..+.+.|..+++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHH
Q 012683 409 GAALRLLEKFDEAANA 424 (458)
Q Consensus 409 a~~~~~~~~~~~A~~~ 424 (458)
+.++..+++++++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 279
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.02 E-value=1.3e-09 Score=81.90 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=72.2
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC--hHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW--PKACYREGA 410 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~ 410 (458)
.+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|.. ......+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~ 85 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD 85 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999998754 344444555
Q ss_pred HHHHhh
Q 012683 411 ALRLLE 416 (458)
Q Consensus 411 ~~~~~~ 416 (458)
.+...+
T Consensus 86 ~l~~~~ 91 (100)
T 3ma5_A 86 AKLKAE 91 (100)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 554444
No 280
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.02 E-value=4.9e-10 Score=106.93 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=102.4
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh------HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT------LLSNRSLCWIRLGQAEHALADAKACRALRPDW---- 401 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---- 401 (458)
..+..+...|..++..|+|++|+..|++++++.|.... +++++|.++..+|++++|+..+++++++.|..
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 264 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence 45677888899999999999999999999987665443 88899999999999999999999999887765
Q ss_pred --hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhhhhcC
Q 012683 402 --PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~ 455 (458)
..+++.+|.++...|++++|+..|++++.+.+.. ..++..++.++..+|++.++
T Consensus 265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6788899999999999999999999988774433 66788888888888776553
No 281
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.02 E-value=6.6e-10 Score=87.47 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=84.4
Q ss_pred CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc-------HH
Q 012683 365 PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN-------KE 437 (458)
Q Consensus 365 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~ 437 (458)
|..+..++.+|.++...|++++|+..|.++++.+|.++.+++.+|.++...|++++|+..|++++...|++ ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999998877 88
Q ss_pred HHHHHHHHHHHhhhhhcC
Q 012683 438 LVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 438 ~~~~l~~~~~~~~~~~~~ 455 (458)
++..++.++..++++.++
T Consensus 81 ~~~~la~~~~~~~~~~~A 98 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDA 98 (131)
T ss_dssp HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccHHHH
Confidence 999999999988887653
No 282
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=1.3e-09 Score=94.44 Aligned_cols=109 Identities=11% Similarity=-0.011 Sum_probs=57.1
Q ss_pred HHHHHhhhHHHhhc----cHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCC--CChHH
Q 012683 335 AEAKARGDEAFKQK----DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRP--DWPKA 404 (458)
Q Consensus 335 ~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p--~~~~~ 404 (458)
.++...|..+.. + ++++|+..|+++++ +.++.+++++|.+|.. .+++++|+..|++|++.+| .++.+
T Consensus 51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a 127 (212)
T 3rjv_A 51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA 127 (212)
T ss_dssp HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence 344455555554 3 55555555555533 3445555555555554 4555555555555555555 23555
Q ss_pred HHHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 405 CYREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 405 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
++++|.+|.. .+++++|+.+|+++++. |+++.+.+.++.++.
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 5555555555 45555555555555554 444445555555544
No 283
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=3.2e-09 Score=96.74 Aligned_cols=118 Identities=7% Similarity=-0.137 Sum_probs=88.6
Q ss_pred HHHHHHhhhHHHhhc--cHHHHHHHHHHhhccCCCchhHHHhHHHHH----Hhh---CCHHHHHHHHHHHHHhCCCChHH
Q 012683 334 AAEAKARGDEAFKQK--DYLMAVDAYTQAIDFDPSDATLLSNRSLCW----IRL---GQAEHALADAKACRALRPDWPKA 404 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~a~~~~p~~~~~ 404 (458)
..++..+|..+...+ ++++++..+.+++..+|.+..+|+.|+.+. ..+ +++++++..++++++++|.+..+
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a 146 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV 146 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH
Confidence 445667777777666 777777777777777777777777777777 556 67777777777777777777777
Q ss_pred HHHHHHHHHHhhhHH--HHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 405 CYREGAALRLLEKFD--EAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 405 ~~~~a~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
|+.++.+...+|.++ ++++.+.++++.+|.+-.++.....++..+++
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 777777777777777 77777777777777777777777777665543
No 284
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.00 E-value=1.6e-09 Score=105.92 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=55.4
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccC--------CCchhHHHhHHHHHHhhC--CHHHHHHHHHHHHHhCCCChHHH
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFD--------PSDATLLSNRSLCWIRLG--QAEHALADAKACRALRPDWPKAC 405 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~ 405 (458)
.+.+.|.+++..|+|++|+..|++++++. +..+.++.++|.++.+.| +|++|+..|++|++++|+++.++
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 34455555555555555555555555431 223445555554444433 35555555555555555555555
Q ss_pred HHHHHHHHHhh---hHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 406 YREGAALRLLE---KFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 406 ~~~a~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
+.+|.++..++ ++++|++.|+++++++|++..++..++..+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 55555543332 334455555555555555555554444443
No 285
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.00 E-value=6.9e-09 Score=95.08 Aligned_cols=116 Identities=11% Similarity=0.027 Sum_probs=106.1
Q ss_pred HHHHHHhhhHHHhhc--cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-HHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQK--DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-AEHALADAKACRALRPDWPKACYREGA 410 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a~ 410 (458)
...+..++..+...+ .|+++++.+.++++.+|.+..+|++++.+....|+ ++++++++++++..+|.+..+|..++.
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ 187 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 567888888888777 59999999999999999999999999999999999 699999999999999999999999999
Q ss_pred HHHHh--------------hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 411 ALRLL--------------EKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 411 ~~~~~--------------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
++..+ +.++++++++.+++..+|++..+|+.+..++...
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 99988 7899999999999999999999998776665443
No 286
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.98 E-value=4.6e-10 Score=107.58 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=109.3
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh------HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT------LLSNRSLCWIRLGQAEHALADAKACRALRPDW--- 401 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--- 401 (458)
...+..+...|..++..|+|++|+..|++++++.+.... +++++|.++...|++++|+..+++++.+.|..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 345678899999999999999999999999998776544 89999999999999999999999999988754
Q ss_pred ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhhhhcC
Q 012683 402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~ 455 (458)
..+++.+|.++...|++++|+..|++++.+.+.. ..++..++.++..+++..++
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 7889999999999999999999999999875432 45888899999988877653
No 287
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=1.1e-09 Score=100.88 Aligned_cols=123 Identities=15% Similarity=-0.020 Sum_probs=104.6
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS------DATLLSNRSLCWIRLGQAEHALADAKACRALRPDW--- 401 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--- 401 (458)
...+..+.+.|..+...|+|++|+..|++++++.+. ...++.++|.+|.. |++++|+..|++|+.+.|..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 456788999999999999999999999999988432 25789999999999 99999999999999997754
Q ss_pred ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhhhhc
Q 012683 402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~ 454 (458)
..++.++|.++..+|+|++|+..|++++.+.|++ ..++..++.++..+++..+
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 5789999999999999999999999999886543 3467777778777776654
No 288
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.97 E-value=2.1e-09 Score=104.64 Aligned_cols=128 Identities=16% Similarity=0.091 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh---
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL--- 397 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--- 397 (458)
...+.++...+.+..+..+|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+..+++++++
T Consensus 304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 44556777888888899999999999999999975 3444 578999999999999999999999999976
Q ss_pred --CCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCcH---HHHHHHHHHHHHhhhhhcCC
Q 012683 398 --RPDW---PKACYREGAALRLLEKFDEAANAFYEGVTL-----DPENK---ELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 398 --~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~ 456 (458)
.|++ ...++++|.+|..+|+|++|+..|++|+++ .|+++ +....+..++..++++.+++
T Consensus 384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 467899999999999999999999999863 56665 44567777777777665543
No 289
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.96 E-value=1.2e-08 Score=93.86 Aligned_cols=110 Identities=12% Similarity=-0.019 Sum_probs=102.6
Q ss_pred HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-h-hHHH
Q 012683 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALADAKACRALRPDWPKACYREGAALRLL-E-KFDE 420 (458)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~-~-~~~~ 420 (458)
....+..++|++.+.++|.++|++..+|+.|+.+...++ .+++++..+++++..+|.+..+|+.++.++..+ + ++++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 334455578999999999999999999999999999999 599999999999999999999999999999998 8 9999
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
+++.+.++++.+|.+..++....-++.+++...
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999988765
No 290
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.96 E-value=6.2e-09 Score=76.64 Aligned_cols=74 Identities=15% Similarity=0.076 Sum_probs=68.6
Q ss_pred CCCchhHHHhHHHHHHhhCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 364 DPSDATLLSNRSLCWIRLGQ---AEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 364 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
+|+++.+++.+|.+++..++ .++|...+++|++++|+++++++.+|.+++..|+|++|+..|+++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68899999999999986665 799999999999999999999999999999999999999999999999988543
No 291
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.96 E-value=4e-09 Score=96.31 Aligned_cols=124 Identities=7% Similarity=-0.033 Sum_probs=102.9
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh------HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT------LLSNRSLCWIRLGQAEHALADAKACRALRPDW---- 401 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---- 401 (458)
.....+.+.+..++..|+|++|+..|+++++..+..+. .+..+|.++...+++++|+..+++|+.+.+..
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 44556777889999999999999999999998776544 34468999999999999999999999975443
Q ss_pred --hHHHHHHHHHHHHhhhHHHHHHHHHHhhc-------cCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 402 --PKACYREGAALRLLEKFDEAANAFYEGVT-------LDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-------~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
..++.++|.+|..+|+|++|+..|+++++ ..+....++.+++.++..++++.++
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34799999999999999999999999994 2333456889999999999887654
No 292
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.95 E-value=1.2e-09 Score=100.86 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=108.4
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------TLLSNRSLCWIRLGQAEHALADAKACRALRPDW---- 401 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---- 401 (458)
..+..+...|..++..|++++|+..|++++++.+... .+++++|.++...|++++|+..+++++.+.|..
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence 4567889999999999999999999999998865543 389999999999999999999999999987765
Q ss_pred --hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhhhhcC
Q 012683 402 --PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~ 455 (458)
..+++.+|.++...|++++|+..|++++...+.. ..++..++.++..+|++.++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7889999999999999999999999999875433 45788899999988887654
No 293
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.95 E-value=4.2e-09 Score=96.97 Aligned_cols=119 Identities=8% Similarity=-0.113 Sum_probs=109.5
Q ss_pred HHHHHHhhhHHHhh-c-cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHH--------HHHHHHHHHHHhCCCChH
Q 012683 334 AAEAKARGDEAFKQ-K-DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAE--------HALADAKACRALRPDWPK 403 (458)
Q Consensus 334 ~~~~~~~g~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--------~A~~~~~~a~~~~p~~~~ 403 (458)
...+..++..+... + +++++++.+.++++.+|.+..+|++|+.+...+++++ ++++.++++++.+|.+..
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S 202 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS 202 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH
Confidence 46677888888776 6 8999999999999999999999999999999999988 999999999999999999
Q ss_pred HHHHHHHHHHHhhh-------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683 404 ACYREGAALRLLEK-------FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452 (458)
Q Consensus 404 ~~~~~a~~~~~~~~-------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 452 (458)
+|..++.++..+++ ++++++++++++..+|++..+++.+..++.+.++.
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999987 89999999999999999999999999998877654
No 294
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.94 E-value=1.3e-08 Score=93.31 Aligned_cols=116 Identities=9% Similarity=-0.125 Sum_probs=105.2
Q ss_pred HHHHHHhhhHHHhhcc----------HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC--HHHHHHHHHHHHHhCCCC
Q 012683 334 AAEAKARGDEAFKQKD----------YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ--AEHALADAKACRALRPDW 401 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~ 401 (458)
...+..++..+...+. +++++..+.+++..+|.+..+|+.|+.+...+++ +++++..+.+++.++|.+
T Consensus 64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN 143 (331)
T 3dss_A 64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN 143 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC
Confidence 3455566666554443 7899999999999999999999999999999995 899999999999999999
Q ss_pred hHHHHHHHHHHHHhhh-HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 402 PKACYREGAALRLLEK-FDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 402 ~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
..+|..++.+...+|. ++++++++.++++.+|.+..+|..++.++..+
T Consensus 144 y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 144 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999 69999999999999999999999999998877
No 295
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.93 E-value=2.7e-09 Score=101.25 Aligned_cols=102 Identities=16% Similarity=0.070 Sum_probs=93.3
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC------chhHHHhHHHHHHhhCCHHHHHHHHHHHHH-----hCCC
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS------DATLLSNRSLCWIRLGQAEHALADAKACRA-----LRPD 400 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~p~ 400 (458)
..+..+...|..+...|+|++|++.|++++++.+. ...+++++|.+|..+|++++|+..+++++. .+|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 56788999999999999999999999999997431 346899999999999999999999999999 7888
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 433 (458)
.+.+++.+|.++..+|++++|+..+++++.+.+
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998743
No 296
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=3.8e-09 Score=96.18 Aligned_cols=96 Identities=17% Similarity=0.078 Sum_probs=89.5
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW--PKACYREGAAL 412 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~ 412 (458)
......+..+...+++++|+..|+++++.+|+++.+++++|.++...|++++|+..|.++++++|++ ..++.++|.++
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 3455666778888999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHhhhHHHHHHHHHHhhc
Q 012683 413 RLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~ 430 (458)
..+|+.++|...|++++.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999999874
No 297
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.90 E-value=1.1e-08 Score=79.00 Aligned_cols=86 Identities=16% Similarity=0.067 Sum_probs=74.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD--WPKACYREGAA 411 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~ 411 (458)
+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|. +..+...+...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~ 98 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVF 98 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999885 44555556666
Q ss_pred HHHhhhHH
Q 012683 412 LRLLEKFD 419 (458)
Q Consensus 412 ~~~~~~~~ 419 (458)
+..+++..
T Consensus 99 l~~l~~~~ 106 (115)
T 2kat_A 99 LRRLARED 106 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHhcccc
Confidence 65555443
No 298
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.89 E-value=1.6e-08 Score=76.40 Aligned_cols=76 Identities=21% Similarity=0.170 Sum_probs=60.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccC-------CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFD-------PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACY 406 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 406 (458)
+++.+..|..+++.++|..|+..|++|++.. +....++.++|.|+.++|++++|+..+++|++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4677888888888888888888888888753 345677778888888888888888888888888888877777
Q ss_pred HHH
Q 012683 407 REG 409 (458)
Q Consensus 407 ~~a 409 (458)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 766
No 299
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.89 E-value=5.2e-09 Score=85.52 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=89.6
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC------
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRP------ 399 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p------ 399 (458)
..+..+...|..++..|+|++|+..|++++++.+.. ..+++++|.++...|++++|+..+++++++.+
T Consensus 47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 126 (164)
T 3ro3_A 47 AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 126 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH
Confidence 446788999999999999999999999999876542 56899999999999999999999999998743
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 433 (458)
....+++.+|.++...|++++|++.+++++++..
T Consensus 127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 2357889999999999999999999999987643
No 300
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.86 E-value=2.4e-08 Score=75.50 Aligned_cols=86 Identities=13% Similarity=-0.153 Sum_probs=75.0
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRALR-------PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV 439 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 439 (458)
++.-.+.+|..+++.++|..|+..|++|++.. +..+..+..+|.+++++|+++.|+..++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35567899999999999999999999999863 45678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 012683 440 FAFREAVEAGRKF 452 (458)
Q Consensus 440 ~~l~~~~~~~~~~ 452 (458)
.++..+...+.+.
T Consensus 84 ~n~~~~~~~~~~~ 96 (104)
T 2v5f_A 84 GNLKYFEYIMAKE 96 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhc
Confidence 9888665544433
No 301
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.83 E-value=1.2e-08 Score=101.42 Aligned_cols=120 Identities=12% Similarity=-0.032 Sum_probs=97.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
...+...|..+...|++++|...|++++++.|.++ .+|.++|.++.+.|++++|...|++|++..|.....|...+.+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34577788888888899999999999999888875 58888888888888888888888888888888777777766653
Q ss_pred -HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 413 -RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 413 -~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
...|++++|...|+++++.+|+++.++..++.++..+|+..
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~ 442 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 442 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHh
Confidence 45788888888888888888888888888888776666543
No 302
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=9.6e-09 Score=87.76 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=90.3
Q ss_pred HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHhhh
Q 012683 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA------LRPDWPKACYREGAALRLLEK 417 (458)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~p~~~~~~~~~a~~~~~~~~ 417 (458)
++..|+|++|.+.++......+....++..+|.++...|++++|+..+++++. ..|....+++.+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999955554443336789999999999999999999999999999 455667899999999999999
Q ss_pred HHHHHHHHHHhhcc---CCC----cHHHHHHHHHHHHHhhhhhcC
Q 012683 418 FDEAANAFYEGVTL---DPE----NKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 418 ~~~A~~~~~~a~~~---~p~----~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+++|+..|++++.+ .++ ...++..++.++..+++++++
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 126 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGA 126 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999988 442 356788899999888887654
No 303
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.79 E-value=3.5e-08 Score=94.45 Aligned_cols=111 Identities=10% Similarity=-0.022 Sum_probs=91.1
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-----C
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL-----R 398 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~ 398 (458)
..+....+.+......|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+..+++++++ .
T Consensus 296 ~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 375 (433)
T 3qww_A 296 RYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP 375 (433)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC
Confidence 34455566666666678999999999999984 4554 467899999999999999999999999976 4
Q ss_pred CCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCcHHHHHHH
Q 012683 399 PDW---PKACYREGAALRLLEKFDEAANAFYEGVTL-----DPENKELVFAF 442 (458)
Q Consensus 399 p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~l 442 (458)
|++ ...|+++|.+|..+|+|++|+..|++|+++ .|+++......
T Consensus 376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~ 427 (433)
T 3qww_A 376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK 427 (433)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 555 467899999999999999999999999874 68888766543
No 304
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.77 E-value=7e-08 Score=95.91 Aligned_cols=112 Identities=11% Similarity=-0.088 Sum_probs=99.5
Q ss_pred HHHHHHhhhHHHh-------hccHH-------HHHHHHHHhhc-cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683 334 AAEAKARGDEAFK-------QKDYL-------MAVDAYTQAID-FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR 398 (458)
Q Consensus 334 ~~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 398 (458)
.+.+...|..+.+ .|+++ +|+..|++|++ +.|++..+|+.+|..+.+.|++++|...|++++++.
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 4667788888776 68877 99999999998 899999999999999999999999999999999999
Q ss_pred CCCh-HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683 399 PDWP-KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445 (458)
Q Consensus 399 p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 445 (458)
|.++ .+|...|.++.+.|++++|++.|++|++..|.....+...+.+
T Consensus 352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 9986 6999999999999999999999999999988876665544443
No 305
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.76 E-value=2.6e-08 Score=94.10 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=96.3
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-------
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------TLLSNRSLCWIRLGQAEHALADAKACRALR------- 398 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------- 398 (458)
..+..+...|..++..|+|++|+..|++++++.|... .+++++|.++...|++++|+..+++++++.
T Consensus 51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 130 (373)
T 1hz4_A 51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 3456778888888999999999999999888765432 346788999999999999999999988874
Q ss_pred -CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHHhhhhhc
Q 012683 399 -PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE-----NKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 399 -p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~~~~~~~~ 454 (458)
|....++..+|.++...|++++|+..+++++...|. ...++..++.++...|++++
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 334567778899999999999999999998887664 23567778888777776654
No 306
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.75 E-value=1.1e-07 Score=91.06 Aligned_cols=119 Identities=13% Similarity=0.041 Sum_probs=95.8
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-----
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL----- 397 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----- 397 (458)
.+.++.+......+..+|+|++|++.|++++++ .|++ ...+.++|.+|..+|+|++|+..+++++.+
T Consensus 284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence 344566667777788899999999999999975 3444 468999999999999999999999999976
Q ss_pred CCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCcHHHH---HHHHHHHHHh
Q 012683 398 RPDW---PKACYREGAALRLLEKFDEAANAFYEGVTL-----DPENKELV---FAFREAVEAG 449 (458)
Q Consensus 398 ~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~---~~l~~~~~~~ 449 (458)
.|++ ...++++|.+|..+|++++|+..|++|+++ .|+++... .+|+.+...+
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 4555 467899999999999999999999999864 67776555 4455554444
No 307
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.74 E-value=7.7e-08 Score=73.57 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=92.9
Q ss_pred hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHhhhHHH
Q 012683 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEH---ALADAKACRALR-P-DWPKACYREGAALRLLEKFDE 420 (458)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~a~~~~-p-~~~~~~~~~a~~~~~~~~~~~ 420 (458)
.......+...|.+++..++....+-|++|.++.+...... ++..++..+.-+ | ..-+.+|.+|..++++|+|+.
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 33455667777888888888899999999999999887776 999999999987 5 577899999999999999999
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 421 AANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
|+.+++..++.+|++.++......+..++.+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998888877654
No 308
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=7.6e-08 Score=76.93 Aligned_cols=98 Identities=9% Similarity=-0.006 Sum_probs=86.8
Q ss_pred hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-
Q 012683 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACYREGAALRL- 414 (458)
Q Consensus 340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~- 414 (458)
.|..+...+.+++|+..|+++.+. .++.+.+++|.+|.. .+++++|+..|++|.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 778888888899999999999987 689999999999999 89999999999999987 689999999999999
Q ss_pred ---hhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683 415 ---LEKFDEAANAFYEGVTLDPENKELVFAFR 443 (458)
Q Consensus 415 ---~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 443 (458)
.+++++|+.+|+++.+. +++.+...++
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 89999999999999987 4566665554
No 309
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.72 E-value=5.5e-08 Score=91.86 Aligned_cols=126 Identities=13% Similarity=-0.031 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh--
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-- 402 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-- 402 (458)
....++.+...|..++..|++++|+..++++++..|... .++.++|.++...|++++|...+++++.+.|...
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 345577888999999999999999999999999887653 3688999999999999999999999999866443
Q ss_pred ----HHHHHHHHHHHHhhhHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhhhhhcC
Q 012683 403 ----KACYREGAALRLLEKFDEAANAFYEGVTLD--------PENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 403 ----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.++..+|.++...|++++|+..|++++.+. |....++..++.++...++++++
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 346889999999999999999999999864 34456778889998888877654
No 310
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.70 E-value=1.6e-07 Score=86.27 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=83.4
Q ss_pred HHHHHHhhhHHHhh---ccHHHHHHHHHHhhccCCCchhHHHhHHHHH--------------------------------
Q 012683 334 AAEAKARGDEAFKQ---KDYLMAVDAYTQAIDFDPSDATLLSNRSLCW-------------------------------- 378 (458)
Q Consensus 334 ~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-------------------------------- 378 (458)
+-+++-+|..++.+ +++.+|+.+|++|++++|+++.+|..++.||
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 34466667777655 4568999999999999999877666544443
Q ss_pred ------------HhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH
Q 012683 379 ------------IRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV 439 (458)
Q Consensus 379 ------------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 439 (458)
...|++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|.+|+.++|..+...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 3478899999999999999975 56788889999999999999999999999999876543
No 311
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.62 E-value=1.6e-07 Score=75.08 Aligned_cols=94 Identities=15% Similarity=0.101 Sum_probs=84.8
Q ss_pred hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hhhHHHHH
Q 012683 347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL----LEKFDEAA 422 (458)
Q Consensus 347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~~~~~~A~ 422 (458)
.+++++|+..|+++.+.... .+. +|.+|...+..++|++.|++|.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 46899999999999998744 344 999999999999999999999987 789999999999999 89999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 423 NAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 423 ~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
++|+++.+. +++.+..+++.++..
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 999999976 689999999999886
No 312
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.60 E-value=2.5e-07 Score=89.83 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=51.5
Q ss_pred ccHHHHHHHHHHhhccCCCchhHHHhHHHH-H--HhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh-----hHH
Q 012683 348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLC-W--IRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE-----KFD 419 (458)
Q Consensus 348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~-----~~~ 419 (458)
+++++|+..|+++. |.++.+++++|.+ + ...+++++|+..|+++.+. .++.+++++|.+|. .| +++
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHH
Confidence 45555555555555 5555555566555 2 3455566666666665543 25555666665555 44 666
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683 420 EAANAFYEGVTLDPENKELVFAFREAVE 447 (458)
Q Consensus 420 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 447 (458)
+|+.+|+++. |+++.+++.++.++.
T Consensus 305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 305 AAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 6666666655 555666666665554
No 313
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.59 E-value=2.3e-07 Score=81.67 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhh-----CCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH-hhhHH
Q 012683 349 DYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRL-----GQAEHALADAKACRALRPDW-PKACYREGAALRL-LEKFD 419 (458)
Q Consensus 349 ~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~a~~~~p~~-~~~~~~~a~~~~~-~~~~~ 419 (458)
...+|...+++|++++|+ +..+|..+|..|.+. |+.++|.+.|++|++++|+. ...++..|..+.. .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 357889999999999999 678999999999995 99999999999999999975 9999999999988 59999
Q ss_pred HHHHHHHHhhccCCC
Q 012683 420 EAANAFYEGVTLDPE 434 (458)
Q Consensus 420 ~A~~~~~~a~~~~p~ 434 (458)
+|.+.+++++..+|.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999998776
No 314
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.56 E-value=5.2e-07 Score=81.39 Aligned_cols=119 Identities=10% Similarity=-0.109 Sum_probs=98.0
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCC--CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC------CChHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDP--SDATLLSNRSLCWIRLGQAEHALADAKACRALRP------DWPKACYRE 408 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~~ 408 (458)
+.-.|..+...|++++|+..+.+.+..+| .+.+++..++.+++++|+.+.|.+.+++..+.+| +....++.-
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence 46789999999999999999999999997 8899999999999999999999999999999999 344444445
Q ss_pred HHHHHHhh--hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683 409 GAALRLLE--KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD 456 (458)
Q Consensus 409 a~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 456 (458)
|.+....| ++++|...|+++....|+.......+. +..++|++.+++
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe 231 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHH
Confidence 55577777 999999999999988887333222333 778888877654
No 315
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.55 E-value=6.4e-07 Score=86.96 Aligned_cols=108 Identities=12% Similarity=-0.048 Sum_probs=93.9
Q ss_pred HHHHHHHhhhH-H--HhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-----CHHHHHHHHHHHHHhCCCChHH
Q 012683 333 KAAEAKARGDE-A--FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-----QAEHALADAKACRALRPDWPKA 404 (458)
Q Consensus 333 ~~~~~~~~g~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~a~~~~p~~~~~ 404 (458)
.+.++...|.. + ...+++++|+..|+++.+. .++.+++++|.+|. .| ++++|+..|++|. |.++.+
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A 320 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA 320 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence 34567777877 4 5679999999999999975 48999999999998 55 9999999999999 999999
Q ss_pred HHHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 405 CYREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 405 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
++++|.+|.. ..++++|+.+|+++.+ ++++.+.+.++.++..
T Consensus 321 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 321 DYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence 9999999877 3499999999999986 5678899999999874
No 316
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.54 E-value=6.8e-07 Score=87.78 Aligned_cols=109 Identities=11% Similarity=-0.034 Sum_probs=80.6
Q ss_pred HHHHHHhhhHHHh----hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHH
Q 012683 334 AAEAKARGDEAFK----QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKAC 405 (458)
Q Consensus 334 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~ 405 (458)
+.++...|..++. .+++++|+..|+++.+. .++.+++++|.+|.. .+++++|+..|+++... .++.++
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 150 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQ 150 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 4556677777777 77778888888777764 467777777877777 67788888888877664 467777
Q ss_pred HHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 406 YREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 406 ~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
+.+|.+|.. .+++++|+++|+++++. +++.++..++.++..
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSR 195 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence 888877776 67788888888877764 467777777777765
No 317
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.50 E-value=1e-06 Score=86.60 Aligned_cols=109 Identities=8% Similarity=-0.065 Sum_probs=98.4
Q ss_pred HHHHHHhhhHHHh----hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHH
Q 012683 334 AAEAKARGDEAFK----QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKAC 405 (458)
Q Consensus 334 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~ 405 (458)
+.++...|..+.. .+++++|+..|+++.+. .++.+++++|.+|.. .+++++|++.|+++++. .++.++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 4567788888888 88999999999999886 578999999999998 88999999999999986 589999
Q ss_pred HHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 406 YREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 406 ~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
+.+|.+|.. .+++++|+.+|+++++. +++.++..++.++..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYF 231 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 999999998 89999999999999875 578899999999875
No 318
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.49 E-value=3.9e-07 Score=66.90 Aligned_cols=70 Identities=11% Similarity=-0.045 Sum_probs=63.3
Q ss_pred HHHHHHhhhHHHhhcc---HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683 334 AAEAKARGDEAFKQKD---YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK 403 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 403 (458)
++.+...|..++-.++ .++|...++++++++|+++.+++.+|..+++.|+|++|+..++++++.+|..+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 5677888888875555 799999999999999999999999999999999999999999999999998543
No 319
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=7.7e-07 Score=70.72 Aligned_cols=81 Identities=12% Similarity=-0.018 Sum_probs=71.9
Q ss_pred HHHHHHhhhHHHhhc---cHHHHHHHHHHhhccC-C-CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 334 AAEAKARGDEAFKQK---DYLMAVDAYTQAIDFD-P-SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
.+..++.|..+.+.+ ++.+++..++..++.+ | ...+++|++|..++++|+|++|.++++++++++|++..+..-+
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 467889999999987 7889999999999998 7 5689999999999999999999999999999999999988766
Q ss_pred HHHHHH
Q 012683 409 GAALRL 414 (458)
Q Consensus 409 a~~~~~ 414 (458)
-.+-..
T Consensus 112 ~~ie~~ 117 (152)
T 1pc2_A 112 RLIDKA 117 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655533
No 320
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.33 E-value=1.4e-06 Score=84.86 Aligned_cols=101 Identities=11% Similarity=-0.036 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL---- 397 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---- 397 (458)
....+..+.+.|..|...|+|++|+..|++++++ .|++ ...++++|.+|..+|+|++|+..|++|+.+
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~ 426 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT 426 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999975 3444 568999999999999999999999999975
Q ss_pred -CCCCh---HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 398 -RPDWP---KACYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 398 -~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
.|++| +.+-.++.++..++.|++|...|+++.+
T Consensus 427 lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 427 HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67775 5557899999999999999999998864
No 321
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.33 E-value=1.5e-06 Score=82.01 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=67.0
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC----------------
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP---------------- 399 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p---------------- 399 (458)
++...|..++..|.|++|...|+++ ..|..+|.|+.++|+|++|++.+++|. +|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF 193 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH
Confidence 5666777777777777777777765 466677777777777777777777772 11
Q ss_pred -----------CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 400 -----------DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 400 -----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
.+++-...+...|...|++++|+..|++++.+++.+-.+++.++.++.+.
T Consensus 194 ~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 194 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 12222334556788899999999999999999999999999999887654
No 322
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.33 E-value=7.3e-06 Score=62.69 Aligned_cols=98 Identities=8% Similarity=-0.112 Sum_probs=82.3
Q ss_pred HHHHHHHhhccCCCchhHHHhHHHHHHhhCCH---HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683 353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA---EHALADAKACRALRP-DWPKACYREGAALRLLEKFDEAANAFYEG 428 (458)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 428 (458)
..+.|.+-+ .....+..-|++|.++.+.... .+++..++..++.+| ..-+.+|.+|..++++|+|++|+++.+.+
T Consensus 26 l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 26 LRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334455544 3334678999999999987754 579999999999998 45788999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHHHHhhh
Q 012683 429 VTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
++.+|++.++......+..++.+
T Consensus 105 L~~eP~N~QA~~Lk~~Ie~ki~k 127 (134)
T 3o48_A 105 FEHERNNKQVGALKSMVEDKIQK 127 (134)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998888765
No 323
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=5.8e-06 Score=79.47 Aligned_cols=127 Identities=3% Similarity=-0.103 Sum_probs=85.1
Q ss_pred chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--
Q 012683 327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALR-- 398 (458)
Q Consensus 327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-- 398 (458)
........+++...|..|+..|+|++|++.|++++...+.. ..++.+++.++...|++++|+..+++++...
T Consensus 48 ~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 127 (434)
T 4b4t_Q 48 DKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR 127 (434)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 34455667789999999999999999999999988764432 2345556666666677777777777766542
Q ss_pred ----CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhhhhh
Q 012683 399 ----PDWPKACYREGAALRLLEKFDEAANAFYEGVTL------DPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 399 ----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
+....++.++|.++...|+|++|+..+++++.. .|...+++..+++++..++++.
T Consensus 128 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (434)
T 4b4t_Q 128 EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLA 192 (434)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHH
T ss_pred hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHH
Confidence 233556667777777777777777776666543 2233455666666666665544
No 324
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.30 E-value=9.5e-06 Score=62.92 Aligned_cols=87 Identities=9% Similarity=-0.074 Sum_probs=77.8
Q ss_pred CCchhHHHhHHHHHHhhCCH---HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHH
Q 012683 365 PSDATLLSNRSLCWIRLGQA---EHALADAKACRALRP-DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVF 440 (458)
Q Consensus 365 p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 440 (458)
......-|++|.++.+.... .+++..++..++-.| ..-+.+|.+|..++++|+|++|+++.+..|+.+|++.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56788999999999997754 589999999999998 46788899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 012683 441 AFREAVEAGRK 451 (458)
Q Consensus 441 ~l~~~~~~~~~ 451 (458)
....+..++.+
T Consensus 116 Lk~~Ie~~i~k 126 (144)
T 1y8m_A 116 LKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888887754
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.25 E-value=5.1e-06 Score=88.10 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=94.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC---------------
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP--------------- 399 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--------------- 399 (458)
..+...|..++..|+|++|+.+|+++ ..|..+|.++.++|++++|++.+++|...++
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 45778999999999999999999996 5899999999999999999999999966554
Q ss_pred ----------CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 400 ----------DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 400 ----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
.+++.+..++..|...|.|++|+..+++++.++|.+...+..++.++.+-
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 24556667888899999999999999999999999999999999887754
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.20 E-value=4.7e-06 Score=88.34 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=81.9
Q ss_pred hhHHHhhccHHHHHHHHHHhh--------------------cc--CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683 341 GDEAFKQKDYLMAVDAYTQAI--------------------DF--DPSDATLLSNRSLCWIRLGQAEHALADAKACRALR 398 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al--------------------~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 398 (458)
|..+...|.|++|+..|+++- +. ..+.+.+|+++|.++.+.|++++|++.|.+|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 666666666666666665543 21 1356789999999999999999999999886
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 399 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
+++.+|++.|.++..+|+|++|+++|..|.+..++ +.+...++.++.++++..
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLA 1184 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHH
Confidence 88999999999999999999999999999988744 323334666666554443
No 327
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.19 E-value=1.1e-05 Score=64.54 Aligned_cols=110 Identities=5% Similarity=-0.038 Sum_probs=86.6
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhC---CCC--
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---------TLLSNRSLCWIRLGQAEHALADAKACRALR---PDW-- 401 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---p~~-- 401 (458)
.+++....++..|.|+.|+.....++.+..+++ .+++.+|.+++..++|..|...|++|+++. |..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 478888899999999999999999888754444 388999999999999999999999998652 111
Q ss_pred --------------------hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683 402 --------------------PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV 446 (458)
Q Consensus 402 --------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 446 (458)
.+..|..|.||..++++++|+..++.. -..-..+.....|+.++
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 268899999999999999999998743 22224566666666553
No 328
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.18 E-value=1.3e-05 Score=72.41 Aligned_cols=116 Identities=8% Similarity=-0.075 Sum_probs=93.4
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----chhHHHhHHHH--HHhhC--CHHHHHHHHHHHHHhCCCC--h
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLC--WIRLG--QAEHALADAKACRALRPDW--P 402 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~--~~~~~--~~~~A~~~~~~a~~~~p~~--~ 402 (458)
..+.....++.+.+.|+++.|.+.+++..+.+|+ +-.+..+++.+ .+..| ++.+|+..|+++.+..|++ +
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~ 214 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ 214 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH
Confidence 4566778899999999999999999999999883 33444555444 66556 9999999999999988873 4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcc----------CCCcHHHHHHHHHHHHHhhh
Q 012683 403 KACYREGAALRLLEKFDEAANAFYEGVTL----------DPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------~p~~~~~~~~l~~~~~~~~~ 451 (458)
..+++ ++..+|++++|.+.++..++. +|+++.+..++..+...+++
T Consensus 215 ~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 215 LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 45555 899999999999999988776 58899999888766666654
No 329
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=2e-06 Score=82.73 Aligned_cols=120 Identities=10% Similarity=0.110 Sum_probs=99.5
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----------------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----------------TLLSNRSLCWIRLGQAEHALADAKACRALR 398 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 398 (458)
...++|..+++.|+|++|++.|.++++..|... .++.++|.+|.+.|++++|++.+.+++.+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 356788889999999999999999999887643 358899999999999999999999999987
Q ss_pred CCChHH------HHHHHHHHHHhhhHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHHhhhhhcC
Q 012683 399 PDWPKA------CYREGAALRLLEKFDEAANAFYEGVTLD------PENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 399 p~~~~~------~~~~a~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
+...++ +..+|.++...|+++.|+..+++++... +....++..++.++...|++.++
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 765443 4567888888999999999999987642 33467888999999888876653
No 330
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.85 E-value=2.3e-05 Score=74.01 Aligned_cols=120 Identities=14% Similarity=0.065 Sum_probs=95.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCC-------------------------CchhHHHhHHHHHHhhCCHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP-------------------------SDATLLSNRSLCWIRLGQAEHAL 388 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------------------------~~~~~~~~~a~~~~~~~~~~~A~ 388 (458)
+..+...|..+++.|+|++|++.|.++-.... .++.-...+..+|.+.|++++|+
T Consensus 148 a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 148 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp TTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHH
Confidence 34577788888888888888888888732100 11112223457899999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHH--HHhhhHHHHHHHHHHhhccCC-----CcHHHHHHHHHHHHHhhhhh
Q 012683 389 ADAKACRALRPDWPKACYREGAAL--RLLEKFDEAANAFYEGVTLDP-----ENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 389 ~~~~~a~~~~p~~~~~~~~~a~~~--~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~~~~~ 453 (458)
..+++++.+++.+...+..+|.+| ++-++..++++.|...+.+.| ++...|..+..++...++++
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 999999999999999999998877 678899999999999998888 78888988888888777665
No 331
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.83 E-value=6.5e-05 Score=66.25 Aligned_cols=118 Identities=12% Similarity=0.034 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhhHHHhh------ccHHHHHHH-----HHHhh-ccCCCchhHHHhHHHHHHh---h--C------CHHHH
Q 012683 331 KKKAAEAKARGDEAFKQ------KDYLMAVDA-----YTQAI-DFDPSDATLLSNRSLCWIR---L--G------QAEHA 387 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~------~~~~~A~~~-----~~~al-~~~p~~~~~~~~~a~~~~~---~--~------~~~~A 387 (458)
..++..+..+|..|-.+ ..|.+++.. +.+++ +.+|++.++++-.|..... . | ...+|
T Consensus 103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A 182 (301)
T 3u64_A 103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence 34566666666665322 344444442 34444 3567888877776666543 1 2 36789
Q ss_pred HHHHHHHHHhCCC--ChHHHHHHHHHHHHh-----hhHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHH
Q 012683 388 LADAKACRALRPD--WPKACYREGAALRLL-----EKFDEAANAFYEGVTLDPEN-KELVFAFREAVEA 448 (458)
Q Consensus 388 ~~~~~~a~~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~ 448 (458)
...+++|++++|+ +..+|..+|..|... |+.+.|.+.|++|++++|+. ...+..++..+-.
T Consensus 183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 9999999999999 677999999999995 99999999999999999975 8888888887654
No 332
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.80 E-value=0.00017 Score=55.11 Aligned_cols=79 Identities=10% Similarity=-0.076 Sum_probs=67.5
Q ss_pred HHHHHHhhhHHHhhccHHH---HHHHHHHhhccC-C-CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLM---AVDAYTQAIDFD-P-SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 408 (458)
.+..++.|..+.+..+... +|..++..+... | ..-..+|.+|..++++|+|.+|.++++.+++.+|+|..+.--+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3567888888888776655 999999999987 5 4678999999999999999999999999999999999987665
Q ss_pred HHHH
Q 012683 409 GAAL 412 (458)
Q Consensus 409 a~~~ 412 (458)
..+.
T Consensus 115 ~~i~ 118 (126)
T 1nzn_A 115 RLID 118 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 333
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.69 E-value=0.00014 Score=69.58 Aligned_cols=85 Identities=7% Similarity=-0.114 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL---- 397 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---- 397 (458)
....+..+.+.|..|...|+|++|+..|++++++ .|++ ...++++|.+|..+|++++|+..+++|+++
T Consensus 325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 3467888999999999999999999999999975 3444 568999999999999999999999999975
Q ss_pred -CCCChH---HHHHHHHHHHH
Q 012683 398 -RPDWPK---ACYREGAALRL 414 (458)
Q Consensus 398 -~p~~~~---~~~~~a~~~~~ 414 (458)
.|++|. .+.+++.+...
T Consensus 405 lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 405 HGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp TCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHH
Confidence 677764 33445555543
No 334
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.63 E-value=0.00011 Score=70.34 Aligned_cols=75 Identities=12% Similarity=-0.020 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL---- 397 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---- 397 (458)
....+..+.+.|..|...|+|++|+.+|++++++ .|++ +..++++|.+|..+|++++|+..|++|+++
T Consensus 336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999999999999999975 3444 568999999999999999999999999976
Q ss_pred -CCCChHH
Q 012683 398 -RPDWPKA 404 (458)
Q Consensus 398 -~p~~~~~ 404 (458)
.|++|..
T Consensus 416 lG~~Hp~~ 423 (433)
T 3qww_A 416 HGKDHPYI 423 (433)
T ss_dssp TCTTCHHH
T ss_pred cCCCChHH
Confidence 6887753
No 335
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.61 E-value=0.00011 Score=67.48 Aligned_cols=73 Identities=14% Similarity=0.016 Sum_probs=63.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 407 (458)
+..+...+..++..|++++|+..+++|++++|. ...|..+|.++...|++++|++.|++|+.++|..+..+..
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~ 349 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI 349 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHH
Confidence 456677888888889999999999999999975 6788999999999999999999999999999988654433
No 336
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.58 E-value=0.0006 Score=52.17 Aligned_cols=81 Identities=11% Similarity=-0.057 Sum_probs=67.6
Q ss_pred HHHHHHhhhHHHhhc---cHHHHHHHHHHhhccCCC-chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 334 AAEAKARGDEAFKQK---DYLMAVDAYTQAIDFDPS-DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
++..++.|..+.+.. +..++|..++..++..|. .-+.+|.+|..+.++|+|.+|.++++.+++.+|++..+.--..
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 355677777777665 456899999999998884 5789999999999999999999999999999999998876666
Q ss_pred HHHHH
Q 012683 410 AALRL 414 (458)
Q Consensus 410 ~~~~~ 414 (458)
.+.-+
T Consensus 120 ~Ie~k 124 (134)
T 3o48_A 120 MVEDK 124 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 337
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.46 E-value=0.0013 Score=50.96 Aligned_cols=79 Identities=11% Similarity=-0.049 Sum_probs=66.6
Q ss_pred HHHHHHhhhHHHhhcc---HHHHHHHHHHhhccCCC-chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKD---YLMAVDAYTQAIDFDPS-DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG 409 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 409 (458)
.+..++.|..+.+..+ -.++|..++..+...|. .-+.+|.+|..++++|+|.+|.++++.+++.+|+|..+.--..
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3556788888887754 46799999999998884 5689999999999999999999999999999999998776555
Q ss_pred HHH
Q 012683 410 AAL 412 (458)
Q Consensus 410 ~~~ 412 (458)
.+.
T Consensus 119 ~Ie 121 (144)
T 1y8m_A 119 MVE 121 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 338
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.18 E-value=0.0018 Score=65.49 Aligned_cols=95 Identities=8% Similarity=-0.026 Sum_probs=52.2
Q ss_pred HHHhhhHHHhhccHHHHH-HHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-----------CCC----
Q 012683 337 AKARGDEAFKQKDYLMAV-DAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-----------RPD---- 400 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----------~p~---- 400 (458)
+...+......|+.++|. ..|++|+...|.+..+|...+....+.|++++|...|++++.. .|.
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 344444444555555554 6666666666666556666666666666666666666666543 132
Q ss_pred -------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 401 -------WPKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 401 -------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
...+|...+....+.|+.+.|...|.+|++.
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2334555555555555555555555555544
No 339
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.16 E-value=0.0056 Score=57.59 Aligned_cols=103 Identities=16% Similarity=0.034 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc--------h--------------hHHHhHHHHHHhhCCHH
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD--------A--------------TLLSNRSLCWIRLGQAE 385 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~--------------~~~~~~a~~~~~~~~~~ 385 (458)
..+....+.+...|......|+.++|++.+.+|+.+-... . .+...++.++...|++.
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4456677888888888888999999999999999874221 0 23445678888999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 386 HALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 386 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
+|+..+.+++..+|-+-.+|..+-.+++..|+..+|++.|+++-+
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988643
No 340
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.10 E-value=0.0067 Score=47.41 Aligned_cols=105 Identities=12% Similarity=-0.005 Sum_probs=88.6
Q ss_pred HHHHHHhhhHHHhhccH------HHHHHHHHHhhccCCCc--------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 012683 334 AAEAKARGDEAFKQKDY------LMAVDAYTQAIDFDPSD--------ATLLSNRSLCWIRLGQAEHALADAKACRALRP 399 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 399 (458)
.+.++......-+.|+. ++-++.|++|+..-|.. .-+|...|.- ...++.++|.+.|..++.+..
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH
Confidence 45677777777777888 88899999999987763 3466666644 567999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH
Q 012683 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV 439 (458)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 439 (458)
.+++.|...|....+.|+...|.+.+.+|+...|...+..
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 9999999999999999999999999999999999876644
No 341
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.07 E-value=0.0045 Score=62.62 Aligned_cols=119 Identities=3% Similarity=-0.122 Sum_probs=96.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhcc-CCCchhHHHhHHHHHHhhCC-HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDF-DPSDATLLSNRSLCWIRLGQ-AEHALADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
...+...+....+.|..+.|...|.+|+.. .+....+|...|..-.+.++ ++.|...|+.+++..|+++..+...+..
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 345667777777788999999999999987 44456778777777777654 8999999999999999999988888888
Q ss_pred HHHhhhHHHHHHHHHHhhccCCC---cHHHHHHHHHHHHHhhhh
Q 012683 412 LRLLEKFDEAANAFYEGVTLDPE---NKELVFAFREAVEAGRKF 452 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~ 452 (458)
....|+.+.|...|++|+...|+ ...++..+.....+.|..
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 88999999999999999998873 456666666666555543
No 342
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.74 E-value=0.006 Score=48.73 Aligned_cols=81 Identities=23% Similarity=0.236 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC---C----------------------CchhHHHhHHHHHHhhCCHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD---P----------------------SDATLLSNRSLCWIRLGQAE 385 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p----------------------~~~~~~~~~a~~~~~~~~~~ 385 (458)
...++.+.-.|..+|..++|..|...|++|+.+. + .+.++.|..|.||.++++++
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 4668899999999999999999999999987641 1 12268899999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 386 HALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 386 ~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
+|+..++..- ..-..++.-+.+|+.|
T Consensus 140 ~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 140 DAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred HHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 9999876532 2334566666666654
No 343
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.68 E-value=0.02 Score=55.74 Aligned_cols=116 Identities=10% Similarity=-0.102 Sum_probs=87.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHH------------------------------------
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLC------------------------------------ 377 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~------------------------------------ 377 (458)
..-+...+..+...|+.++|...|++|+.. |.+..+|+..+..
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 355777888888889999999999999999 9887666544332
Q ss_pred ----HHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh-hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 378 ----WIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE-KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 378 ----~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
..+.+..+.|...|.+| +..+.....|...|......+ +++.|...|+.+++..|+.+..+..+...+..+++
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 22356688899999999 433345667777777777777 59999999999999889988877666665555443
No 344
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.11 E-value=0.038 Score=53.32 Aligned_cols=78 Identities=18% Similarity=0.082 Sum_probs=46.7
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
-+.-.|....-+..+..|...|.+|+.+.|++...|..+|.+....|+.-+|+-+|.+++.-...++.+.-++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 345555555555566666666666666666666666666666666666666666666666555455555655555443
No 345
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.027 Score=57.08 Aligned_cols=59 Identities=20% Similarity=0.153 Sum_probs=52.2
Q ss_pred HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683 370 LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEG 428 (458)
Q Consensus 370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 428 (458)
++..-+.-++..|+|+-|+...++|+..-|.....|+.|+.+|..+|+|+.|+-.+.-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44445666667899999999999999999999999999999999999999999888766
No 346
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.32 E-value=0.24 Score=48.07 Aligned_cols=111 Identities=6% Similarity=-0.140 Sum_probs=84.4
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALADAKACRALRPDWPKACYREGAALR 413 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 413 (458)
..+...+....+.+..+.|...|.+| ...+....+|...|..-...+ +.+.|...|+.+++.-|+.+..+...+....
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45666777777788899999999999 433335567777777666666 6999999999999999999988777788888
Q ss_pred HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683 414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 450 (458)
..|+.+.|...|+++. .....+..........|
T Consensus 366 ~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 366 RIGDEENARALFKRLE----KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 9999999999998873 34555555554444443
No 347
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.05 E-value=0.2 Score=43.44 Aligned_cols=63 Identities=22% Similarity=0.171 Sum_probs=58.6
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK 403 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 403 (458)
...+++.|+.++|++..+..++..|.+......+-+.+.-.|+|+.|.+.++.+.+++|....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 346788999999999999999999999999999999999999999999999999999998754
No 348
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.03 E-value=0.081 Score=41.38 Aligned_cols=91 Identities=8% Similarity=-0.043 Sum_probs=71.5
Q ss_pred ccCCCchhHHHhHHHHHHhhCCH------HHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683 362 DFDPSDATLLSNRSLCWIRLGQA------EHALADAKACRALRPDW--------PKACYREGAALRLLEKFDEAANAFYE 427 (458)
Q Consensus 362 ~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~a~~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~ 427 (458)
-+.|++++.|........+.|+. ++-++.|++|+..-|.. ...|.+.|.- ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 46799999999999999999999 89999999999877642 3444555644 677999999999999
Q ss_pred hhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 428 GVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 428 a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
++.+....+.+|...++..-++++..
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~ 111 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVK 111 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHH
Confidence 99887777888888887777666544
No 349
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.06 Score=54.60 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=56.2
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKAC 394 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 394 (458)
...-+..++..+..+|+|+-|++.-++|+...|.+...|+.++.||..+|+|+.|+-.+..+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34467778888999999999999999999999999999999999999999999999776665
No 350
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.82 E-value=0.35 Score=47.00 Aligned_cols=103 Identities=12% Similarity=-0.035 Sum_probs=83.5
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACRALRP-DWPKACYREGAALR 413 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~ 413 (458)
.+...-..+.+.|++++|.+.|.+..+.. ..+...|..+-.+|.+.|+.++|.+.|++..+..- -+...|..+-.++.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 45667778889999999999999987653 33577788888899999999999999999887542 25567999999999
Q ss_pred HhhhHHHHHHHHHHhhc--cCCCcHHH
Q 012683 414 LLEKFDEAANAFYEGVT--LDPENKEL 438 (458)
Q Consensus 414 ~~~~~~~A~~~~~~a~~--~~p~~~~~ 438 (458)
+.|++++|.+.|++--. ..|+...+
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 99999999999988654 45665443
No 351
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.66 E-value=0.84 Score=36.39 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=74.7
Q ss_pred HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH--Hh---------------CCCC
Q 012683 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR--AL---------------RPDW 401 (458)
Q Consensus 339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~~---------------~p~~ 401 (458)
-.+..++-.|.|..|+-.+.+ -+.....+.-+.||.++.+|.+|+..+++.+ +. +|.+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 467778888999988887643 3567788888999999999999999999999 22 3444
Q ss_pred hHHH-HHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683 402 PKAC-YREGAALRLLEKFDEAANAFYEGVTLDPENKE 437 (458)
Q Consensus 402 ~~~~-~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 437 (458)
-+.+ ..+|..+...|+-+||+..|.......|=.+.
T Consensus 113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 5544 46899999999999999999988877765443
No 352
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.51 E-value=0.17 Score=48.77 Aligned_cols=81 Identities=7% Similarity=-0.070 Sum_probs=74.6
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 448 (458)
..+..+|.+......+..|..+|.+|+.+.|++...|..+|.+....|+.-+|+-+|.+++.-....+.+..++..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 36678899999999999999999999999999999999999999999999999999999998877789999999998876
Q ss_pred h
Q 012683 449 G 449 (458)
Q Consensus 449 ~ 449 (458)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 5
No 353
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.26 E-value=0.44 Score=46.34 Aligned_cols=107 Identities=13% Similarity=0.011 Sum_probs=80.3
Q ss_pred hccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhhhHHHHHHH
Q 012683 347 QKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACRALR-PDWPKACYREGAALRLLEKFDEAANA 424 (458)
Q Consensus 347 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~ 424 (458)
.+..++|.+.|.+..+.. +.+...|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|.+.
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 345677888888766543 2357788889999999999999999999988764 22677899999999999999999999
Q ss_pred HHHhhcc--CCCcHHHHHHHHHHHHHhhhhhc
Q 012683 425 FYEGVTL--DPENKELVFAFREAVEAGRKFHG 454 (458)
Q Consensus 425 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~ 454 (458)
|.+-.+. .|+. ..+..+-.++.+.|+.++
T Consensus 163 ~~~M~~~G~~Pd~-~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 163 DAHMVESEVVPEE-PELAALLKVSMDTKNADK 193 (501)
T ss_dssp HHHHHHTTCCCCH-HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCCCCH-HHHHHHHHHHhhCCCHHH
Confidence 9987654 5554 444455555555555443
No 354
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.80 E-value=0.23 Score=46.27 Aligned_cols=93 Identities=16% Similarity=-0.021 Sum_probs=74.7
Q ss_pred HhhhHHHhhccHHHHHHHHHHhhccCCC------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC---CCC----hHHH
Q 012683 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPS------DATLLSNRSLCWIRLGQAEHALADAKACRALR---PDW----PKAC 405 (458)
Q Consensus 339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---p~~----~~~~ 405 (458)
..|..++..|+|.+|.+.+++..+.... -.+++......|..++++.++...+.+|.... +.+ +...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6889999999999999999888874222 24678888999999999999999999987653 122 2444
Q ss_pred HHHHHHHH-HhhhHHHHHHHHHHhhcc
Q 012683 406 YREGAALR-LLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 406 ~~~a~~~~-~~~~~~~A~~~~~~a~~~ 431 (458)
..-|..+. ..++|..|..+|.+++..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 56788888 899999999999998743
No 355
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.40 E-value=0.4 Score=41.60 Aligned_cols=66 Identities=17% Similarity=0.056 Sum_probs=59.5
Q ss_pred HHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683 377 CWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF 442 (458)
Q Consensus 377 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 442 (458)
..++.|..++|+..+...++-+|.+...-..+-..+.-.|+|+.|.+-++-+.+++|+....-..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y 71 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999976554333
No 356
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.99 E-value=0.36 Score=45.15 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
.....+...+..+...|++.+|+..+.+++..+|-+-.+|..+-.++...|+..+|++.|+++-+
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455667778888999999999999999999999999999999999999999999999988754
No 357
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.76 E-value=0.41 Score=45.46 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=78.2
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCC---chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh---CCCC---hHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPS---DATLLSNRSLCWIRLGQAEHALADAKACRAL---RPDW---PKACYR 407 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~p~~---~~~~~~ 407 (458)
+..+|..+++.|++++|++.|.++...... -..++.....+++..++|..|...+.++-.+ .+++ .+....
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 467899999999999999999998876433 3578888889999999999999999999665 2333 234556
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhccC
Q 012683 408 EGAALRLLEKFDEAANAFYEGVTLD 432 (458)
Q Consensus 408 ~a~~~~~~~~~~~A~~~~~~a~~~~ 432 (458)
.|.++...++|.+|...|..++...
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhChHHHHHHHHHHHhccC
Confidence 7888889999999999999887553
No 358
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.80 E-value=1.9 Score=41.07 Aligned_cols=100 Identities=11% Similarity=-0.073 Sum_probs=78.4
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc----CCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHH---hCCCC-
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF----DPS--DATLLSNRSLCWIRLGQAEHALADAKACRA---LRPDW- 401 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~p~~- 401 (458)
++++-....+..++..|+|.+|...++....- .+. -.+++..-...+...+++.+|...++++.. -.+..
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 45666678999999999999999998886532 111 146777888999999999999999999742 23333
Q ss_pred ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 402 ---PKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
...|...|..+...++|.+|..+|.+++..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355678899999999999999999998764
No 359
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.83 E-value=1.4 Score=45.30 Aligned_cols=83 Identities=11% Similarity=-0.034 Sum_probs=52.8
Q ss_pred hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH--------HhCCCChHHHHHH----
Q 012683 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR--------ALRPDWPKACYRE---- 408 (458)
Q Consensus 341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--------~~~p~~~~~~~~~---- 408 (458)
...+...|++++|.+.... .++...|-.+|..+.+.++++.|.+.|.++= .....+.+....+
T Consensus 659 f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHH
Confidence 3445667778877776432 3567888889999989999998888888741 1112333322222
Q ss_pred --------HH-HHHHhhhHHHHHHHHHHh
Q 012683 409 --------GA-ALRLLEKFDEAANAFYEG 428 (458)
Q Consensus 409 --------a~-~~~~~~~~~~A~~~~~~a 428 (458)
|. ++..+|++++|++.|.+.
T Consensus 734 ~~~~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTGKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33 455577777777766654
No 360
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=87.01 E-value=8.9 Score=40.28 Aligned_cols=120 Identities=8% Similarity=-0.084 Sum_probs=88.8
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc----CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--CCChHHH
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF----DPSDATLLSNRSLCWIRLGQAEHALADAKACRALR--PDWPKAC 405 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~ 405 (458)
..-..+...-..+.+.|+.++|.+.|.+.-+. ...+...|.-+-..|.+.|+.++|.+.|++..... | +...|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTY 203 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHH
Confidence 34456777888899999999999999765432 23457888888899999999999999999998754 5 66678
Q ss_pred HHHHHHHHHhhh-HHHHHHHHHHhhcc--CCCcHHHH-----HHHHHHHHHhhhh
Q 012683 406 YREGAALRLLEK-FDEAANAFYEGVTL--DPENKELV-----FAFREAVEAGRKF 452 (458)
Q Consensus 406 ~~~a~~~~~~~~-~~~A~~~~~~a~~~--~p~~~~~~-----~~l~~~~~~~~~~ 452 (458)
..+-.++.+.|+ .++|.+.|++-... .|+...+. .....++..+++.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 888889999998 47888888876643 45543332 2344555555443
No 361
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=86.64 E-value=0.93 Score=31.55 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
+....+.+..+..+|...-+.|+|++|+.+|.++++
T Consensus 12 ~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 12 QVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445667888889999889999999999998877665
No 362
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=84.98 E-value=5.2 Score=41.02 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=68.7
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACY 406 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 406 (458)
+.+...|..+.+.++++.|+.+|.++=.. ...+...+..++......|++..|...|.+. .-+-
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~--------g~~~ 753 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA--------GDIQ 753 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------TCHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc--------CCHH
Confidence 57889999999999999999999886332 1334455556667777777777777665542 1122
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhh
Q 012683 407 REGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVEAGR 450 (458)
Q Consensus 407 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~ 450 (458)
..-.+|...+++++|...-++ ..|.. +.+....+.-+...+
T Consensus 754 ~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~ 797 (814)
T 3mkq_A 754 GAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNG 797 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhcc
Confidence 345678899999999987654 45554 234444444333333
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.82 E-value=2.3 Score=45.89 Aligned_cols=91 Identities=14% Similarity=-0.055 Sum_probs=72.1
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccC-C----------------------CchhHHHhHHHHHHhhCCHHHHHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFD-P----------------------SDATLLSNRSLCWIRLGQAEHALADAKA 393 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 393 (458)
.+-+|..++..|++++|.++|++|-.-. . ..+..|+.....+.+.+.++.+++....
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3778999999999999999999985311 1 0124566778889999999999999999
Q ss_pred HHHhCCC-Ch----HHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683 394 CRALRPD-WP----KACYREGAALRLLEKFDEAANAFYE 427 (458)
Q Consensus 394 a~~~~p~-~~----~~~~~~a~~~~~~~~~~~A~~~~~~ 427 (458)
|++..+. +. ..|.++=..+..+|+|++|...+..
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 9987643 32 2577888899999999999888753
No 364
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.71 E-value=1.9 Score=41.42 Aligned_cols=64 Identities=8% Similarity=0.007 Sum_probs=28.5
Q ss_pred HHHhHHHHHHhhCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683 370 LLSNRSLCWIRLGQAEHALADAKACRALRP-----DWPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 433 (458)
++..+=..|+.-+.|+.|.....++.-..+ .....+|.+|+++...++|.+|.+++..|+...|
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 333344444444444444444444431111 1133444455555555555555555555554443
No 365
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=83.47 E-value=1.5 Score=30.44 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
..+.+..+..+|...-+.|+|++|+.+|..+++
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456777888888888888888888888877654
No 366
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=82.80 E-value=9.2 Score=30.53 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=54.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhc--c---------------CCCchh-HHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAID--F---------------DPSDAT-LLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
....-+.-.+.+..+|..|+..+++.++ . +|.+-+ .+..+|....+.|..+||+.++.....
T Consensus 63 Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 63 TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 4456677788899999999999999983 2 233434 455689999999999999999999988
Q ss_pred hCCCCh
Q 012683 397 LRPDWP 402 (458)
Q Consensus 397 ~~p~~~ 402 (458)
..|-.+
T Consensus 143 ~~~lf~ 148 (242)
T 3kae_A 143 KSFLFS 148 (242)
T ss_dssp HCCCHH
T ss_pred Cccccc
Confidence 877654
No 367
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=82.12 E-value=4.1 Score=27.37 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=26.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT 369 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 369 (458)
--.-...|..+...|++++|+.+|.+|+...|.-..
T Consensus 17 Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 17 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 334456778888888888888888888888776443
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.93 E-value=4.1 Score=44.00 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=67.8
Q ss_pred hHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH-h----------------------C
Q 012683 342 DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA-L----------------------R 398 (458)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~----------------------~ 398 (458)
..+...+.++-+.+. +...|.++..-|.+|.+++..|++++|...|.+|-. + .
T Consensus 820 ~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 345666666655442 345567777789999999999999999999988731 1 1
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC-CCcHH
Q 012683 399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTLD-PENKE 437 (458)
Q Consensus 399 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~ 437 (458)
..-+..|+.....+...+-++.+++.-+.|+... ++++.
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~ 935 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 935 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh
Confidence 1124667788889999999999999999998764 34443
No 369
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.84 E-value=23 Score=32.85 Aligned_cols=101 Identities=12% Similarity=-0.007 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc----------------------CCCch------------------hH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF----------------------DPSDA------------------TL 370 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------------~p~~~------------------~~ 370 (458)
..+-++..+.|..|.+.|++++-.+.+...... .|+.. ..
T Consensus 16 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~ 95 (394)
T 3txn_A 16 RIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRT 95 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345577889999999999998887776544322 12211 12
Q ss_pred H------HhHHHHHHhhCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 371 L------SNRSLCWIRLGQAEHALADAKACRALRP------DWPKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 371 ~------~~~a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
| ..+|..|+..|+|.+|++.+.+..+--. .-.+.|....++|..++++..+...|.+|...
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 2 2689999999999999999999886321 12467788899999999999999999988654
No 370
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.62 E-value=6.4 Score=31.78 Aligned_cols=76 Identities=12% Similarity=-0.030 Sum_probs=44.4
Q ss_pred hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH
Q 012683 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD 419 (458)
Q Consensus 340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 419 (458)
+.....+-|+++.|.+..... ++...|..+|...+..|+++-|.+.|.++= -+-.+...|.-.|+-+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHH
Confidence 445566677777777765443 456677777777777777777777776642 1223444455555554
Q ss_pred HHHHHHHHh
Q 012683 420 EAANAFYEG 428 (458)
Q Consensus 420 ~A~~~~~~a 428 (458)
.-...-+.+
T Consensus 78 ~L~kla~iA 86 (177)
T 3mkq_B 78 KLSKMQNIA 86 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444333333
No 371
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.28 E-value=6.3 Score=37.20 Aligned_cols=79 Identities=6% Similarity=-0.081 Sum_probs=62.1
Q ss_pred CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--CCCcHHHH
Q 012683 365 PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD---WPKACYREGAALRLLEKFDEAANAFYEGVTL--DPENKELV 439 (458)
Q Consensus 365 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~ 439 (458)
..-..++..+|..|.+.|++++|++.|.++...... -...++...+++...++|..+...+.++-.+ ...++...
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 334568899999999999999999999999876433 3578889999999999999999999998654 23344444
Q ss_pred HHHH
Q 012683 440 FAFR 443 (458)
Q Consensus 440 ~~l~ 443 (458)
..+.
T Consensus 208 ~~lk 211 (429)
T 4b4t_R 208 NRYK 211 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 372
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.92 E-value=7.3 Score=31.45 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=54.8
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
....|...|......|+++-|..+|+++=. +..+...|.-.|+.++-.+..+.|...+- +.....++
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~ 99 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNT 99 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHH
Confidence 345799999999999999999999988543 23334445556776655555444444332 22223456
Q ss_pred HHhhhHHHHHHHHHHhh
Q 012683 413 RLLEKFDEAANAFYEGV 429 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~ 429 (458)
..+|+++++++.|.+.-
T Consensus 100 l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 100 FYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHTCHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHCC
Confidence 67777777777776553
No 373
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.08 E-value=8.4 Score=40.62 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=72.8
Q ss_pred hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH-hCC-------------------
Q 012683 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA-LRP------------------- 399 (458)
Q Consensus 340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~p------------------- 399 (458)
....+...+.++-|.+ .+...|.++..-|.+|.+++..|++++|...|.+|-. +..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 3445566677765443 4567778888889999999999999999999998642 111
Q ss_pred -C--ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-CCCcHHHHH
Q 012683 400 -D--WPKACYREGAALRLLEKFDEAANAFYEGVTL-DPENKELVF 440 (458)
Q Consensus 400 -~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~ 440 (458)
. ....|......+...+-++-+++.-+.|+.. .++++....
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~ 936 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI 936 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchH
Confidence 1 1246778999999999999999999999964 566666544
No 374
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=78.41 E-value=3.7 Score=28.72 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhh
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAI 361 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 361 (458)
....|...-.++..+.+.|.|++||++.++|.
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34566777777888888888888888776654
No 375
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=78.36 E-value=2.4 Score=29.61 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
....+..+..+|...-..|+|++|+..|..+++
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777888888888888899999888877665
No 376
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=78.01 E-value=2.9 Score=31.23 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
.....+..+..+|...-..|+|++|+.+|..+++
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567788888888888888999999988877664
No 377
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=77.80 E-value=6 Score=27.34 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC--CCchhHH-HhHHHHHHh
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD--PSDATLL-SNRSLCWIR 380 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~-~~~a~~~~~ 380 (458)
+..++.+...|..+|+.++|.+|...|+++..+. |.--.++ |.++.|.-+
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999999999988553 2233455 677777543
No 378
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.61 E-value=28 Score=31.30 Aligned_cols=27 Identities=15% Similarity=0.088 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683 400 DWPKACYREGAALRLLEKFDEAANAFY 426 (458)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~ 426 (458)
.+++.+..+|..+.+.+++.+|...|-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 567888999999999999999999883
No 379
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=77.53 E-value=3.2 Score=29.02 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
..+..+..+|...-..|+|++|+.+|..+++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566677888888888888888888877664
No 380
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=76.49 E-value=18 Score=25.63 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
......+..+..+|...-..|+|++|+.+|..+++
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566788888888888888899888888876654
No 381
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=74.44 E-value=25 Score=27.78 Aligned_cols=64 Identities=5% Similarity=0.031 Sum_probs=49.7
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhH-----H-HhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATL-----L-SNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~-----~-~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
....-+..|..+|..|+|=+|=+.++.++...+.. ..+ . .-.|..+.+.|+...|...+.+|+.
T Consensus 31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556889999999999999999999999876543 222 2 3334466778999999999999987
No 382
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=73.30 E-value=11 Score=26.79 Aligned_cols=43 Identities=28% Similarity=0.242 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch
Q 012683 326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA 368 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 368 (458)
..++.++.--.-...|..++..|+++.|+.+|.+|+...|.-.
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 3445555556667889999999999999999999998877643
No 383
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=71.97 E-value=13 Score=36.89 Aligned_cols=90 Identities=10% Similarity=-0.108 Sum_probs=50.7
Q ss_pred hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH
Q 012683 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD 419 (458)
Q Consensus 340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 419 (458)
.+..++..+...++...+.++....+++.. .--++...++.|++..|...|.+.-.-.+..++..|=+|+++..+|+.+
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~ 336 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA 336 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHH
Confidence 344444445344555555554443333222 2222223345677777777776654433445667777777777777777
Q ss_pred HHHHHHHHhhc
Q 012683 420 EAANAFYEGVT 430 (458)
Q Consensus 420 ~A~~~~~~a~~ 430 (458)
+|...|+++..
T Consensus 337 ~a~~~~~~~a~ 347 (618)
T 1qsa_A 337 EAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 77777777654
No 384
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.93 E-value=7.9 Score=37.20 Aligned_cols=70 Identities=14% Similarity=-0.131 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC---C--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP---S--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDW 401 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 401 (458)
.++.-+.-.-+.|...+.|++|.....++.-... + ....+|..|.++.-.++|.+|.+++..|+...|.+
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3455566677778888999999999999863221 1 14567888999999999999999999999988754
No 385
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.02 E-value=16 Score=28.07 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=43.6
Q ss_pred hhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683 380 RLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444 (458)
Q Consensus 380 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 444 (458)
..|+-++--+.+...+.-+|-++..++.+|.+|.++|+..+|-+.+.+|.+. +-+++.....+
T Consensus 103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k--G~kEAC~~in~ 165 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK--GEKEACNAVNT 165 (172)
T ss_dssp HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHT
T ss_pred HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh--hhHHHHHHHHh
Confidence 3455554444455545566777999999999999999999999999999864 45555555443
No 386
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.94 E-value=21 Score=35.36 Aligned_cols=118 Identities=6% Similarity=-0.177 Sum_probs=75.0
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCch----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 412 (458)
+...+...+.+.+.+.|...|.+.....+-+. .++..+|.-....+...++...+.++....++... .-.++...
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~A 295 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMA 295 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHH
Confidence 44455556667789999999987654322221 22223333333344466788888887665444433 33334444
Q ss_pred HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683 413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455 (458)
Q Consensus 413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 455 (458)
.+.|+++.|...|...-..........+.+++++.++|+..++
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a 338 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEA 338 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHH
Confidence 5779999999999876554345688899999999888776543
No 387
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=69.91 E-value=8.2 Score=36.58 Aligned_cols=62 Identities=5% Similarity=-0.114 Sum_probs=36.7
Q ss_pred hhhHHHhhccHHHHHHHHHHhhcc--------CCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-CCCC
Q 012683 340 RGDEAFKQKDYLMAVDAYTQAIDF--------DPS--DATLLSNRSLCWIRLGQAEHALADAKACRAL-RPDW 401 (458)
Q Consensus 340 ~g~~~~~~~~~~~A~~~~~~al~~--------~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~ 401 (458)
.-..||+-++..-|-..+...-.. .|. ....+|.+|..+.-.++|.+|.+++..|++. .|..
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 335667777766666655332111 111 1245666777777777777777777777776 6654
No 388
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=68.35 E-value=5.4 Score=27.88 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 012683 405 CYREGAALRLLEKFDEAANAF 425 (458)
Q Consensus 405 ~~~~a~~~~~~~~~~~A~~~~ 425 (458)
+-++|..+...|+|++|+++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech 38 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCH 38 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHH
Confidence 334555555555555554433
No 389
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.82 E-value=26 Score=26.93 Aligned_cols=55 Identities=11% Similarity=-0.027 Sum_probs=44.4
Q ss_pred HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR 398 (458)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 398 (458)
+..+|.-++--+.+...+.-.+-+++++..+|.+|.+.|+..+|-+.+.+|.+..
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4566777777777777667677789999999999999999999999999998754
No 390
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=67.55 E-value=9.8 Score=38.18 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 406 YREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 406 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
...|+..+..|+|..|.+....++..+|++.+++..++.++++++.
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555554455555555555555554443
No 391
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.02 E-value=6.2 Score=27.32 Aligned_cols=30 Identities=27% Similarity=0.189 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH
Q 012683 351 LMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR 395 (458)
Q Consensus 351 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 395 (458)
..|++..++|++.+ +.|+|++|+..|.+++
T Consensus 9 ~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 9 DMARKYAILAVKAD---------------KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHH
Confidence 46666666666543 4555555555555444
No 392
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=63.67 E-value=16 Score=24.52 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=25.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683 373 NRSLCWIRLGQAEHALADAKACRALRPDWPK 403 (458)
Q Consensus 373 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 403 (458)
.+|..+...|++++|+.+|.+|+...|+-.+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4788888888889999999999988887655
No 393
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=62.27 E-value=48 Score=29.95 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=35.5
Q ss_pred HHHHHHHHHHh-----CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc------cCCCcHHHHHHHHHH
Q 012683 387 ALADAKACRAL-----RPDWPKACYREGAALRLLEKFDEAANAFYEGVT------LDPENKELVFAFREA 445 (458)
Q Consensus 387 A~~~~~~a~~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~p~~~~~~~~l~~~ 445 (458)
++..|.+|+.. +..+.--|..+|-.+++.+++.+|++++-+|-. ...+|.+++.++-.+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 345 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEI 345 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 55555565543 233444466777788888888888887766532 234566666555443
No 394
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=62.05 E-value=18 Score=20.43 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 012683 10 AVRERVQQFLNAACTGNLDLLKKIAKQL 37 (458)
Q Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~ 37 (458)
.....-+++..||..||.+.++.|-.++
T Consensus 9 ~I~aiEQqiyvA~seGd~etv~~Le~QL 36 (40)
T 1gp8_A 9 NKDAIRKQMDAAASKGDVETYRKLKAKL 36 (40)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455667889999999999999987664
No 395
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=61.15 E-value=9.6 Score=38.22 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=22.1
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC
Q 012683 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG 382 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 382 (458)
+..+|+.++.+|+|.-|.+....++..+|++..+...+|.+|.++|
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4444444444445555555444444444444444444444444433
No 396
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.08 E-value=76 Score=28.21 Aligned_cols=27 Identities=22% Similarity=0.041 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683 400 DWPKACYREGAALRLLEKFDEAANAFY 426 (458)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~ 426 (458)
.+++.+..+|..+...|++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 478889999999999999999999885
No 397
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=59.33 E-value=23 Score=29.28 Aligned_cols=90 Identities=13% Similarity=0.007 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh-----HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT-----LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 405 (458)
.+++.-..-.|..++.+++|.+|.+.+.+|++..|.... ++-.+--+.+-+|+... ...+++ +.. ..|
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~-----~~~-~~y 83 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK-----YHL-MQF 83 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH-----TTC-GGG
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh-----Cch-hHH
Confidence 467888999999999999999999999999999887642 34444555566788653 223321 111 246
Q ss_pred HHHHHHHHHhh---hHHHHHHHHHHh
Q 012683 406 YREGAALRLLE---KFDEAANAFYEG 428 (458)
Q Consensus 406 ~~~a~~~~~~~---~~~~A~~~~~~a 428 (458)
..+..+. +.| .|+++++.++..
T Consensus 84 ~~L~~Av-r~Gdl~~f~~~l~~~~~~ 108 (203)
T 3t5x_A 84 AEVTRAV-SEGNLLLLHEALAKHEAF 108 (203)
T ss_dssp HHHHHHH-HHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHH-HhCCHHHHHHHHHHhHHH
Confidence 6776655 445 455555544443
No 398
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=58.41 E-value=73 Score=29.45 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=38.5
Q ss_pred HHHHHHHHHHh-----CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhh------ccCCCcHHHHHHHHHHHH
Q 012683 387 ALADAKACRAL-----RPDWPKACYREGAALRLLEKFDEAANAFYEGV------TLDPENKELVFAFREAVE 447 (458)
Q Consensus 387 A~~~~~~a~~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~------~~~p~~~~~~~~l~~~~~ 447 (458)
++..|.+||.. .-.+.--|..+|-.+++.++|.+|+.++-+|- ....+|.+++..+..+..
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIan 354 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVAN 354 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHH
Confidence 44555555543 22333446677888888888888888887763 344567777776654433
No 399
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=56.64 E-value=69 Score=28.51 Aligned_cols=109 Identities=14% Similarity=0.004 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC----Cc----hhH--------HHhHHHHHHh----hCCHHHHHHH
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP----SD----ATL--------LSNRSLCWIR----LGQAEHALAD 390 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~----~~~--------~~~~a~~~~~----~~~~~~A~~~ 390 (458)
........+.|..++..|+|++|+..|+..+..-| ++ .++ -|-+|..... ++. +...+.
T Consensus 111 l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~-~~~kR~ 189 (325)
T 3mv2_A 111 LDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKE-GNTVRM 189 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT-TCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHH
Confidence 34444567799999999999999999999887532 11 111 1122221111 000 011111
Q ss_pred HHH-----HHHhCCCChHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCcHHHHH
Q 012683 391 AKA-----CRALRPDWPKACYREGA-ALRLLEKFDEAANAFYEGVTLDPENKELVF 440 (458)
Q Consensus 391 ~~~-----a~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 440 (458)
++= -.++.|.+...-.+.|. ..++.++|..|...-++.+++.|..+.+..
T Consensus 190 lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q 245 (325)
T 3mv2_A 190 LELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ 245 (325)
T ss_dssp HHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 111 11234433333344454 447899999999999999999987554433
No 400
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=56.31 E-value=21 Score=22.07 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc
Q 012683 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF 363 (458)
Q Consensus 328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 363 (458)
++...+++.+...+...++-.|...|++.+++|+++
T Consensus 14 ~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~l 49 (53)
T 2rkl_A 14 ASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 345567788888888888888888888888888764
No 401
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=52.57 E-value=31 Score=28.54 Aligned_cols=38 Identities=5% Similarity=-0.301 Sum_probs=32.7
Q ss_pred hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHH
Q 012683 368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405 (458)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 405 (458)
....|.+|..+.-.++|.+|.+++.+|++..|......
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~ 51 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKN 51 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHH
Confidence 45788899999999999999999999999988765443
No 402
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=52.28 E-value=14 Score=25.06 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=24.4
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhcc
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDF 363 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 363 (458)
.......|+.+...|+|+.|+.+|+.++..
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 445677888888999999999999888864
No 403
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=52.23 E-value=58 Score=24.44 Aligned_cols=77 Identities=8% Similarity=-0.086 Sum_probs=47.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC--cHHHHHHHHHHHHHhhh
Q 012683 375 SLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE--NKELVFAFREAVEAGRK 451 (458)
Q Consensus 375 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~ 451 (458)
+.+|+..++.++.++.+....+.-...|+...-.+++...-.+..+|.+++++....... -.++|..+..++.++.+
T Consensus 47 Srlyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~Vf~rI~k 125 (126)
T 2npu_A 47 SRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRISK 125 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhc
Confidence 345556666666666665552221112344556677777777888888888887644321 23778888888777654
No 404
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=52.10 E-value=83 Score=29.07 Aligned_cols=59 Identities=19% Similarity=0.044 Sum_probs=40.8
Q ss_pred HHHHHHHHHHh-----CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc------cCCCcHHHHHHHHHH
Q 012683 387 ALADAKACRAL-----RPDWPKACYREGAALRLLEKFDEAANAFYEGVT------LDPENKELVFAFREA 445 (458)
Q Consensus 387 A~~~~~~a~~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~p~~~~~~~~l~~~ 445 (458)
++..|.+|+.. ...+.--|..+|-.+++.+++.+|+.++-.|-. ...+|.+++.++-.+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 55566666543 334455577889999999999999998877632 345677777766544
No 405
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.12 E-value=21 Score=26.27 Aligned_cols=46 Identities=7% Similarity=-0.053 Sum_probs=26.1
Q ss_pred hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 012683 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399 (458)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 399 (458)
.+..|.+|..+.++||+++.. +.-...+.-|.+++..+.+++.+..
T Consensus 15 ik~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 15 IREAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 344677777777777776531 2222223335555666666666654
No 406
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=49.47 E-value=1.1e+02 Score=32.35 Aligned_cols=80 Identities=10% Similarity=-0.074 Sum_probs=60.4
Q ss_pred hHHHhHHHHHHhhCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--CCCcHHHHHH
Q 012683 369 TLLSNRSLCWIRLGQAEHALADAKACRA-----LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL--DPENKELVFA 441 (458)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 441 (458)
..|.-+-.+|.+.|+.++|...|....+ ..| +...|..+-..+.+.|++++|.+.|++-... .|+-..+...
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4566777889999999999999977543 344 6678999999999999999999999987653 5765555444
Q ss_pred HHHHHHHhh
Q 012683 442 FREAVEAGR 450 (458)
Q Consensus 442 l~~~~~~~~ 450 (458)
+. ++-+.+
T Consensus 207 I~-glcK~G 214 (1134)
T 3spa_A 207 LQ-CMGRQD 214 (1134)
T ss_dssp HH-HHHHHT
T ss_pred HH-HHHhCC
Confidence 44 444444
No 407
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.19 E-value=32 Score=25.31 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683 382 GQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 382 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 433 (458)
..|++|..+..+||++|-. |.-...+..|...+..+++++.+..
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 4578899999999988762 4444455556666777777777655
No 408
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=48.85 E-value=41 Score=23.11 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=8.4
Q ss_pred HhhCCHHHHHHHHHHHH
Q 012683 379 IRLGQAEHALADAKACR 395 (458)
Q Consensus 379 ~~~~~~~~A~~~~~~a~ 395 (458)
-+.|+|++|+..|.+++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 44555555555444443
No 409
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=48.61 E-value=1.5e+02 Score=26.41 Aligned_cols=116 Identities=15% Similarity=0.037 Sum_probs=66.8
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----c----hhH--------HHhHHHHHHhh-CC-----HHHHHHH
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----D----ATL--------LSNRSLCWIRL-GQ-----AEHALAD 390 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~----~~~--------~~~~a~~~~~~-~~-----~~~A~~~ 390 (458)
......+.|..++..|+|++|+..|+..+..-|- + .++ -|-+|...... .+ .++..+.
T Consensus 101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~ 180 (320)
T 3mkr_B 101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRI 180 (320)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHH
Confidence 3444678899999999999999999999876531 1 111 12222222110 11 1222222
Q ss_pred HHHH-----HHhCCCChHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 391 AKAC-----RALRPDWPKACYREGA-ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 391 ~~~a-----~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
++=| .++.|.+...-.+.|. ..++.++|..|...-++.+++.|..+.+ .....++...
T Consensus 181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~-~qArkil~~c 244 (320)
T 3mkr_B 181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVA-QQTRKILSAC 244 (320)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHH-HHHHHHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHH
Confidence 2221 1334444443345555 4478999999999999999998864433 3333443333
No 410
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.20 E-value=1.5e+02 Score=27.86 Aligned_cols=62 Identities=8% Similarity=-0.143 Sum_probs=50.3
Q ss_pred hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----CCC--ChHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 012683 368 ATLLSNRSLCWIRLGQAEHALADAKACRAL----RPD--WPKACYREGAALRLLEKFDEAANAFYEGV 429 (458)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 429 (458)
..+...+|..|...|++.+|...+.....- ++. -.+.+....+.+...++|..|...++++.
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455678899999999999999999987632 111 14677888999999999999999999874
No 411
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=47.28 E-value=46 Score=23.49 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=36.1
Q ss_pred HHhhhHHHhhccHHHHHHHHHHhhccCCCch------hHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------TLLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
+..|..+|..|+|=+|=+.++..+...|... -+..-.|..+.+.|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4567778888888888888888777765421 1222234444456666 7777777765
No 412
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.18 E-value=1.3e+02 Score=25.44 Aligned_cols=101 Identities=10% Similarity=-0.089 Sum_probs=61.5
Q ss_pred CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC---CC-----chh-HHHhHHHHHHhhCCHHHHHHHHHHH
Q 012683 324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD---PS-----DAT-LLSNRSLCWIRLGQAEHALADAKAC 394 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~-----~~~-~~~~~a~~~~~~~~~~~A~~~~~~a 394 (458)
.+......+..+...+.-..+....+|++|++..++.-+.. +. +.. .-.....+..+..+..+ .+.+.
T Consensus 8 ~~~~~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~---~L~~~ 84 (235)
T 2d2s_A 8 MSSTAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISS---KLSQS 84 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred CcccchhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 34456677888888899999999999999999877654431 11 111 11112222222222222 22223
Q ss_pred HHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683 395 RALRPDWPKACYREGAALRLLEKFDEAANAFYEG 428 (458)
Q Consensus 395 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 428 (458)
+.. ...+......-..+.++|+-+.|.+.|.++
T Consensus 85 l~~-~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 85 ILS-SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHT-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHh-cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 333 444555566666789999999999998876
No 413
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=45.04 E-value=24 Score=25.00 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=27.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683 373 NRSLCWIRLGQAEHALADAKACRALRPDWPK 403 (458)
Q Consensus 373 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 403 (458)
.+|..+...|+++.|+.+|.+|+...|+-..
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 5788899999999999999999999887544
No 414
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=43.76 E-value=52 Score=23.14 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 350 YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
.+.|+....+|++. -+.|+|++|+..|..+++
T Consensus 12 l~~Ai~lv~~Ave~---------------D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 12 STAAVAVLKRAVEL---------------DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHhCCHHHHHHHHHHHHH
Confidence 34566666666544 345666666665555543
No 415
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.76 E-value=1e+02 Score=24.33 Aligned_cols=59 Identities=7% Similarity=-0.117 Sum_probs=44.5
Q ss_pred HhHHHHHHhhCCHHHHHHHHHHHHHhCCCC------hHHHHH-HHH--HHHHhhhHHHHHHHHHHhhc
Q 012683 372 SNRSLCWIRLGQAEHALADAKACRALRPDW------PKACYR-EGA--ALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 372 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~-~a~--~~~~~~~~~~A~~~~~~a~~ 430 (458)
+..|..++..|+|-+|-+.++.+-.-.+.. .+++.. +|. .+.+.|+..-|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445677778899999999999998876654 233334 333 34667999999999999976
No 416
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=42.67 E-value=41 Score=31.83 Aligned_cols=31 Identities=6% Similarity=-0.120 Sum_probs=27.2
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
...++..+|.+|+.+++|++|+..+++++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4568889999999999999999999999863
No 417
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=42.62 E-value=1.4e+02 Score=24.98 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=42.1
Q ss_pred HHHHHHHhhhHH-----HhhccHHHHHHHHHHhhcc-----CCCch---hHHHhHH-HHHHhhCCHHHHHHHHHHHHHh
Q 012683 333 KAAEAKARGDEA-----FKQKDYLMAVDAYTQAIDF-----DPSDA---TLLSNRS-LCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 333 ~~~~~~~~g~~~-----~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~~a-~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
.+=-++.+|.-+ |..|+-+.|...|+.|.++ .|.+| .+..|.+ ..|.-+++.++|....++|+..
T Consensus 119 kVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 119 KFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455566554 4556677888888888863 44443 3333443 4455688999999999888763
No 418
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=42.03 E-value=64 Score=25.78 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683 385 EHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435 (458)
Q Consensus 385 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 435 (458)
..|...+.++...+|......-.+..+++.+.+....+..|...+..+|..
T Consensus 73 ~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~r 123 (175)
T 4abx_A 73 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEA 123 (175)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 345566666677777777777778888888888888888888888777764
No 419
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=41.62 E-value=55 Score=31.15 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=28.2
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRALR 398 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 398 (458)
...++..+|.+|+.+++|++|+..++++|...
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 45688899999999999999999999999753
No 420
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=40.39 E-value=45 Score=31.62 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=27.8
Q ss_pred CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 366 SDATLLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
+...++..+|.+|+.+|+|++|+..++++|..
T Consensus 194 tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 194 NRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34578889999999999999999999999863
No 421
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.16 E-value=98 Score=32.54 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=42.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 012683 374 RSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGV 429 (458)
Q Consensus 374 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 429 (458)
+...+...+.++-| ...+..-|.++-.-|-+|+++...|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55556677877654 34667788888788999999999999999999999875
No 422
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=39.63 E-value=50 Score=31.64 Aligned_cols=33 Identities=18% Similarity=0.014 Sum_probs=28.8
Q ss_pred CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683 366 SDATLLSNRSLCWIRLGQAEHALADAKACRALR 398 (458)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 398 (458)
+...++..+|.+|+.+++|++|+..+++++...
T Consensus 201 tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 201 DNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 345688899999999999999999999999753
No 423
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=43.40 E-value=7.1 Score=39.16 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=47.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHH
Q 012683 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387 (458)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A 387 (458)
++++.++|+.++.+|+|.-|.+....++..+|++..+...+|.+|.++|.-.+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 567888999999999999999999999999999999999999999998855443
No 424
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=37.15 E-value=1e+02 Score=21.33 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 401 WPKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
..+.....|.-+++.++|.+|+..|+++..+
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 3455566677778888888888888887644
No 425
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.84 E-value=1.8e+02 Score=23.82 Aligned_cols=67 Identities=9% Similarity=-0.186 Sum_probs=49.9
Q ss_pred CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683 366 SDATLLSNRSLCWIRLGQAEHALADAKACRAL--RPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433 (458)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 433 (458)
....+|...+... ..+...++...|...... .-..+..|-.-|..+...|++.+|.+.|+.+++...
T Consensus 78 RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 78 RFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3445666666654 223366888888887664 566777788888899999999999999999998653
No 426
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=35.77 E-value=69 Score=22.17 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhh
Q 012683 327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAI 361 (458)
Q Consensus 327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 361 (458)
.....+.++.+.+-|.-++.+||+..|+.++.-+.
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 62 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAW 62 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667888999999999999999999998875543
No 427
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=35.75 E-value=26 Score=23.77 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 405 CYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 405 ~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
...+|+=+..+|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45677778888888888888877764
No 428
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=41.51 E-value=8 Score=38.81 Aligned_cols=49 Identities=18% Similarity=-0.022 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
...+|+..+..|+|..|.+....++..+|++.+++..++.++++++...
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 4456666667777777777777777777777777777777777766543
No 429
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=34.88 E-value=72 Score=22.14 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=28.4
Q ss_pred CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhh
Q 012683 326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAI 361 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 361 (458)
......+.++.+.+-|.-++.+||+..|+.++.-+-
T Consensus 31 ~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 66 (87)
T 2pmr_A 31 DEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAH 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445667788889999999999999999988875543
No 430
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=34.08 E-value=0.9 Score=43.23 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=92.1
Q ss_pred HHHHHHcC-CHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCCCCCCCCCCCchHHHHHHH
Q 012683 257 IQVAAARG-NREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAA 335 (458)
Q Consensus 257 l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (458)
++.|-+.| ..++|+||.--+. .......++.+-+..++.++--+ ....+......
T Consensus 90 i~~A~~~~~~edLv~yL~MaRk---~~ke~~IDteLi~ayAk~~rL~e-lEefl~~~N~A-------------------- 145 (624)
T 3lvg_A 90 VQAANTSGNWEELVKYLQMARK---KARESYVETELIFALAKTNRLAE-LEEFINGPNNA-------------------- 145 (624)
T ss_dssp HHHTTTSSCCTTHHHHHHTTST---TCCSTTTTHHHHHHHHTSCSSST-TTSTTSCCSSS--------------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHH---HhcccccHHHHHHHHHhhCcHHH-HHHHHcCCCcc--------------------
Confidence 44444434 4677888864432 24444566666666666543222 22222221111
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH--------
Q 012683 336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR-------- 407 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-------- 407 (458)
.+..-|..+|..|.|+.|.-.|+. ..-|..+|.|+..+|+|.+|++..++|- +++.|-.
T Consensus 146 ~iq~VGDrcf~e~lYeAAKilys~--------isN~akLAstLV~L~~yq~AVdaArKAn-----s~ktWKeV~~ACvd~ 212 (624)
T 3lvg_A 146 HIQQVGDRCYDEKMYDAAKLLYNN--------VSNFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDG 212 (624)
T ss_dssp CTHHHHHHHHHSCCSTTSSTTGGG--------SCCCTTTSSSSSSCSGGGSSTTTTTTCC-----SSCSHHHHTHHHHHS
T ss_pred cHHHHHHHHHHccCHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHHHHHhcC-----ChhHHHHHHHHHhCc
Confidence 123467788888888888777743 3335556666677777777766655542 2222221
Q ss_pred ----------------------HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683 408 ----------------------EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG 449 (458)
Q Consensus 408 ----------------------~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 449 (458)
+-.-|...|-|+|-+..++.++.++..+-.....|+.++.+-
T Consensus 213 ~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 213 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp CTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred hHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 222355667788888888888888888888888888887643
No 431
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.66 E-value=2.9e+02 Score=25.26 Aligned_cols=86 Identities=7% Similarity=-0.070 Sum_probs=58.4
Q ss_pred HhhccHHHHHHHHHHhhccC-------C--------Cch--hHHHhHHHHHHhhCCHHHHHHHHHHHHHh-------CCC
Q 012683 345 FKQKDYLMAVDAYTQAIDFD-------P--------SDA--TLLSNRSLCWIRLGQAEHALADAKACRAL-------RPD 400 (458)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~-------p--------~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~p~ 400 (458)
-+..++++|++.+++..+.. . ..+ .+....+..|+..++..+|...++++-.. +|.
T Consensus 87 ~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~ 166 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLR 166 (393)
T ss_dssp HHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSH
T ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHH
Confidence 35568899999887654321 0 122 34456788889999999999999998643 221
Q ss_pred -ChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 401 -WPKACYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 401 -~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
....|...+..+...++|..+...+..++.
T Consensus 167 v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 167 ITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 244555667777888898888776666553
No 432
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=31.04 E-value=82 Score=28.68 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHh
Q 012683 11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE 78 (458)
Q Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~ 78 (458)
...+..-+-..+..++.+..+.+++.+.+ ....-..|.+|+..+.-....+..+....+++.
T Consensus 39 d~~gsR~lQ~~l~~~~~~~~~~I~~el~~------~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~ 100 (369)
T 3k49_A 39 DQHGSRFIQRELATSPASEKEVIFNEIRD------DAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQ 100 (369)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHHHHGG------GHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCcchHHHHHHhccCCHHHHHHHHHHHHH------HHHHHhhCcccccHHHHHHHhCCHHHHHHHHHH
Confidence 34566667778888998888888887543 334456789999999999999998877777776
No 433
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.89 E-value=87 Score=29.58 Aligned_cols=36 Identities=8% Similarity=-0.074 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-CCCc
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-DPSD 367 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~ 367 (458)
+++.-++-.|..++.+++|.+|.+.+++|++. .|..
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 66777888888888889999999999998887 7654
No 434
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=30.66 E-value=11 Score=32.51 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF 363 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 363 (458)
...|..+..+|..+-+.|+|++|+.+|+.++++
T Consensus 20 ~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 20 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455777888899999999999999999999875
No 435
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=30.63 E-value=53 Score=25.44 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc
Q 012683 327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF 363 (458)
Q Consensus 327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 363 (458)
.....+.+..++..|..|...|+++.|.-.|-+++.+
T Consensus 33 l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L 69 (146)
T 2xze_A 33 PRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITL 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999887554
No 436
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=29.77 E-value=78 Score=21.65 Aligned_cols=17 Identities=18% Similarity=-0.083 Sum_probs=10.0
Q ss_pred hhCCHHHHHHHHHHHHH
Q 012683 380 RLGQAEHALADAKACRA 396 (458)
Q Consensus 380 ~~~~~~~A~~~~~~a~~ 396 (458)
..|+|++|+..|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45666666666655554
No 437
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=29.57 E-value=61 Score=23.95 Aligned_cols=32 Identities=22% Similarity=0.119 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 350 YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
...|+.+..+|++. -..|+|++|+..|..|++
T Consensus 15 l~kAi~lv~~Ave~---------------D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQE---------------DKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHccCHHHHHHHHHHHHH
Confidence 44666666666643 244566666555555543
No 438
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.55 E-value=94 Score=29.52 Aligned_cols=32 Identities=9% Similarity=-0.132 Sum_probs=28.3
Q ss_pred CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 366 SDATLLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
+...++..+|.+|+.+|+|++|+..++++|..
T Consensus 195 tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 195 NKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 34568889999999999999999999999964
No 439
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=27.77 E-value=2e+02 Score=24.73 Aligned_cols=68 Identities=10% Similarity=-0.082 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683 384 AEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK 451 (458)
Q Consensus 384 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 451 (458)
++.|++-++-.++..|+++...+.+++++...=+.-.+...-.+-+..-|-...+.....++.+.++.
T Consensus 101 FDaALERielGLe~~p~s~~L~la~SKILlqrI~~~~~~~s~eE~~~~~p~~~ta~kmi~qa~~~l~~ 168 (346)
T 3qtm_A 101 IDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEESLANIPVTQLVNPYIEKAIQYLRP 168 (346)
T ss_dssp HHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHH
Confidence 34455555555555677777777777777666555555555555555555555555555555544443
No 440
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=27.76 E-value=63 Score=24.35 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF 363 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 363 (458)
+.++.+.+.|..++.+||+-+|-+.|-+|.+.
T Consensus 5 ~lAe~yL~EA~ell~kGD~vQAsEK~ykAaee 36 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQACEKYYKAAEE 36 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35778899999999999999999988887764
No 441
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=26.73 E-value=1.1e+02 Score=28.89 Aligned_cols=83 Identities=19% Similarity=0.111 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhh--hHHHhhccHHH-HHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 328 PEIKKKAAEAKARG--DEAFKQKDYLM-AVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 328 ~~~~~~~~~~~~~g--~~~~~~~~~~~-A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
++....|+.+..++ ..--+.-+|.+ |+++|++|++. +++....|.+.+.-|...|+
T Consensus 423 ~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD------------- 489 (526)
T 2wb7_A 423 QEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD------------- 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH-------------
Q ss_pred hCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 397 LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 397 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
||..|--....|..+.|...-.+|-++
T Consensus 490 --------yy~~AA~k~~yG~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 490 --------YYVNAARKALNGDLEQAKIDAEKAKEY 516 (526)
T ss_dssp --------HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhcCccHHHHHHHHHHHHH
No 442
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=26.64 E-value=2e+02 Score=21.52 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
..+|+.....|...+..|.|+.|.-..++|++
T Consensus 13 ~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~E 44 (135)
T 1o3u_A 13 MDAAKDDLEHAKHDLEHGFYNWACFSSQQAAE 44 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 35677888888888999999877777766665
No 443
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=25.46 E-value=3.1e+02 Score=25.58 Aligned_cols=31 Identities=10% Similarity=-0.125 Sum_probs=22.9
Q ss_pred HHHHHHHhhhHHHhhccHHHHHHHHHHhhcc
Q 012683 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDF 363 (458)
Q Consensus 333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 363 (458)
...-+..++..+...++|.||.-++....++
T Consensus 34 ~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l 64 (436)
T 2yin_A 34 YIRYLYKLRDLHLDCDNYTEAAYTLLLHTWL 64 (436)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3455667888899999999988887554443
No 444
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=25.31 E-value=2.5e+02 Score=22.02 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=59.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHH-HHHHHHHHhCCCChHHHHHHHHH
Q 012683 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHAL-ADAKACRALRPDWPKACYREGAA 411 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~~~~~a~~ 411 (458)
+..+..++..|-+.+|.+.|..+.. .+|. ....-|.+|..|.+...+.+-- .....- +.+..-. -|.+=.+
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~--itlkSde-~yL~YWI 82 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNN--ITLKTDE-QYMLYWI 82 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHT--CCTTSCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhh--CCccCCH-HHHHHHH
Confidence 3456678899999999999998865 4444 3578899999999988776332 222222 3333332 3344467
Q ss_pred HHHhhhHHHHHHHHHH
Q 012683 412 LRLLEKFDEAANAFYE 427 (458)
Q Consensus 412 ~~~~~~~~~A~~~~~~ 427 (458)
+...|++++|+..-+.
T Consensus 83 yiGRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 83 YIGRSQSEEALELART 98 (161)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHh
Confidence 7888999999987553
No 445
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=24.87 E-value=1.4e+02 Score=28.04 Aligned_cols=47 Identities=6% Similarity=-0.101 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 384 AEHALADAKACRALRPD--------WPKACYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 384 ~~~A~~~~~~a~~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
|+..+++++.|+.+=|. ...++..+|++|...|+|++|++..++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 46677777777776443 346788899999999999999999998874
No 446
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=24.71 E-value=95 Score=29.33 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=28.8
Q ss_pred CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 365 PSDATLLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 365 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
++...++..+|.+|+.+++|++|+..+++++..
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345678889999999999999999999999864
No 447
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=24.55 E-value=2.4e+02 Score=23.14 Aligned_cols=71 Identities=3% Similarity=-0.242 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc--cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAID--FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP 402 (458)
Q Consensus 331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 402 (458)
.+-..-+...+..+ ..+...++.+.|..... +.-..+..|-.-|..+...|++.+|...|..+++.+-...
T Consensus 77 ~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 77 PRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34455555555544 23345577777766655 4556678888899999999999999999999999876443
No 448
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=24.21 E-value=3.1e+02 Score=24.00 Aligned_cols=70 Identities=10% Similarity=-0.074 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683 384 AEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 453 (458)
Q Consensus 384 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 453 (458)
++.|++-++-.+...|++....+.++.++...=+.-.+...-.+-+..-|-...+...+.++.+.+....
T Consensus 148 FDaALERielGLe~~p~s~~L~la~sKIllqrI~~v~~~~s~eE~~~~~p~~~ta~kmi~qa~~~l~~La 217 (393)
T 3msv_A 148 IDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEESLANIPVTQLVNPYIEKAIQYLRPLA 217 (393)
T ss_dssp HHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666788888888888888887777776766666666666766666666666665555443
No 449
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.18 E-value=1.5e+02 Score=20.79 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=39.2
Q ss_pred HhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHH--HHHhhhHHHHHHHHHHhhc
Q 012683 372 SNRSLCWIRLGQAEHALADAKACRALRPDWP----KACYREGAA--LRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 372 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~a~~--~~~~~~~~~A~~~~~~a~~ 430 (458)
+..|..++..|+|-+|-+.++.+-.-.|... ++...+|.+ +...|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3456777788999999999999988886532 233344443 3455666 7777777764
No 450
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=24.04 E-value=1.1e+02 Score=29.27 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=27.2
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRAL 397 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 397 (458)
...++..+|.+|+.+++|++|+..+++++..
T Consensus 181 k~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 181 KGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568889999999999999999999999964
No 451
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=23.65 E-value=1.5e+02 Score=27.85 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683 384 AEHALADAKACRALRPD--------WPKACYREGAALRLLEKFDEAANAFYEGVT 430 (458)
Q Consensus 384 ~~~A~~~~~~a~~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 430 (458)
|+..+++++.|+.+=|. ...++..+|++|...|+|++|.+..++++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45666777777765443 246788899999999999999999998874
No 452
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=23.45 E-value=1.1e+02 Score=22.07 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhh
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAI 361 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 361 (458)
..++.+...+-...+.|+|++|.+.+.+|-
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456777778888889999999998887754
No 453
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.42 E-value=1.2e+02 Score=21.85 Aligned_cols=31 Identities=16% Similarity=0.021 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 362 (458)
..++.+.-.+-...+.|+|++|.+.+.+|=+
T Consensus 18 G~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 18 GDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566677777788888999888888877543
No 454
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=23.07 E-value=2.1 Score=40.78 Aligned_cols=83 Identities=10% Similarity=0.063 Sum_probs=46.7
Q ss_pred CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683 366 SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445 (458)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 445 (458)
+.+.+|+.+|.++++.++..+|++.|-+ .+++..|...-.+..+.|.|++-+.+++.|-+. -.++.+-..|..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 3466777777777777776666665533 234444444555555666676666666666544 2334444445555
Q ss_pred HHHhhhhhc
Q 012683 446 VEAGRKFHG 454 (458)
Q Consensus 446 ~~~~~~~~~ 454 (458)
+.++++..+
T Consensus 126 yAk~~rL~e 134 (624)
T 3lvg_A 126 LAKTNRLAE 134 (624)
T ss_dssp HHTSCSSST
T ss_pred HHhhCcHHH
Confidence 555555444
No 455
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=22.37 E-value=1.6e+02 Score=28.06 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCC-----------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683 384 AEHALADAKACRALRPD-----------WPKACYREGAALRLLEKFDEAANAFYEGVTL 431 (458)
Q Consensus 384 ~~~A~~~~~~a~~~~p~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 431 (458)
|+..+++++.|+..=|. ...++..+|++|...|+|++|.+..++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45667777777765442 2457888999999999999999999998854
No 456
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=22.31 E-value=2.2e+02 Score=20.41 Aligned_cols=69 Identities=19% Similarity=0.039 Sum_probs=44.3
Q ss_pred hhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHH-HHhhccCC
Q 012683 360 AIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAF-YEGVTLDP 433 (458)
Q Consensus 360 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~-~~a~~~~p 433 (458)
.++..+..-.+-.-|...+...|+|++|....+... +|..---+|.+-.++|--+.+...+ +-+-.-+|
T Consensus 31 wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p 100 (115)
T 2uwj_G 31 WLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRLAGLGGSSDP 100 (115)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCSSH
T ss_pred HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCH
Confidence 355555544455556777888899888876544322 5555556677788888888888777 44443333
No 457
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=21.98 E-value=2.3e+02 Score=20.40 Aligned_cols=78 Identities=12% Similarity=-0.000 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHH-HHh
Q 012683 350 YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAF-YEG 428 (458)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~-~~a 428 (458)
-++|... ...++..+..-.+-.-|...+...|+|++|....+... +|..---+|.+-.++|--+.+...+ +-+
T Consensus 23 HqEA~tI-AdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 23 HEEANCI-AEWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444332 33355555544455567778888999999987665433 5555556677788888888888877 434
Q ss_pred hccCC
Q 012683 429 VTLDP 433 (458)
Q Consensus 429 ~~~~p 433 (458)
-.-+|
T Consensus 97 ~sg~p 101 (116)
T 2p58_C 97 RSQDP 101 (116)
T ss_dssp TCCCH
T ss_pred hCCCH
Confidence 33333
No 458
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=21.06 E-value=1.4e+02 Score=21.64 Aligned_cols=30 Identities=20% Similarity=0.007 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHHHhh
Q 012683 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAI 361 (458)
Q Consensus 332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 361 (458)
..++.....+-...+.|+|++|.+.+.+|=
T Consensus 20 G~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 20 GNARSFAMEALQFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556777778888888999999999887764
No 459
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=20.78 E-value=2.3e+02 Score=19.93 Aligned_cols=75 Identities=7% Similarity=-0.102 Sum_probs=45.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC--cHHHHHHHHHHHHHh
Q 012683 375 SLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE--NKELVFAFREAVEAG 449 (458)
Q Consensus 375 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~ 449 (458)
+..|+..++.+.-++.+....+.-..-|+...-.+++...-.+..+|.+++++..+.... -.+++..+..++.++
T Consensus 17 sr~~f~~~n~~~m~~~L~pLh~~l~~~peT~~E~sF~~~fG~~L~~A~~~~~~y~~t~~~~~l~qAWdiY~~V~~ri 93 (94)
T 3fap_B 17 SRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRI 93 (94)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHhcc
Confidence 345666777777777777765542112234456666666667788888888777655321 245666666665554
No 460
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=20.63 E-value=2.2e+02 Score=23.91 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHhh-----ccCCCch----hHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 351 LMAVDAYTQAI-----DFDPSDA----TLLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 351 ~~A~~~~~~al-----~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
+.|...|++|+ .+.|.+| -++..--..|.-+++.++|....++|+.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 461
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=20.43 E-value=91 Score=29.66 Aligned_cols=30 Identities=3% Similarity=-0.020 Sum_probs=26.4
Q ss_pred chhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683 367 DATLLSNRSLCWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 396 (458)
...++..+|.+|+.+++|++|+..+++++.
T Consensus 179 k~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 179 QGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 356888999999999999999999999874
No 462
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=20.00 E-value=2.4e+02 Score=24.17 Aligned_cols=46 Identities=26% Similarity=0.264 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhc----cCCCch---hHHHhHHH-HHHhhCCHHHHHHHHHHHHH
Q 012683 351 LMAVDAYTQAID----FDPSDA---TLLSNRSL-CWIRLGQAEHALADAKACRA 396 (458)
Q Consensus 351 ~~A~~~~~~al~----~~p~~~---~~~~~~a~-~~~~~~~~~~A~~~~~~a~~ 396 (458)
+.|...|++|.+ +.|.+| .+..|.+. .|.-+++.++|....++|+.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667777765 455554 23334333 34447888888887777664
Done!