Citrus Sinensis ID: 012685

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEHHHHHHHHHHHHHEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcHHHHHHHHHHHHHHHccccHHHccccccccccccHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccEEEEHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccEEEEEEccccEEEcccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHEHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHHHHHccccccEcccccccccccccEEEEEEHcccEEEcccccccccccccccccccHHEHcHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHccccEEEEEEcccccHHHHHHHHEcccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccEEEEEEEEcccEEEEEcccccEEEEEcccccc
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVArgrfslpapsvphnrhwapchaivATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMcralmpgdeesmndeAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCtkwsnpvihrspqtrpatsssaityldwnsglvvsaeeeqnpdgmcglsdigghimkvPVIGFQVLLCMHlegtpagarnialpvlfsPLFLLQGVGVVFSTTRLVEKIVILLRSgagtgiyfrissrahdcfgflhrgsrllgwwsidegsredQARLVHenssgyntfcgyppevvkkmpkkELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFegdisvvllpcrhrilcrydhltl
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNpvihrspqtrpatsssaityLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHenssgyntfcgyppEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGdisvvllpcrhrilcrydhltl
MSWRRVLKSVQAVAAHSllltftlllvlklDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYppevvkkmpkkeLAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL
****RVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGD***MNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIH************AITYLDWNSGLVVSA******DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDE********LVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHL**
********SVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMP**E*SMNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIH************AITYLDWNSGLVVS************LSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALG*****************NEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL
********SVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHR*********SSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL
*SWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHR********SSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYD****
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
224132996466 predicted protein [Populus trichocarpa] 0.960 0.944 0.796 0.0
225455850466 PREDICTED: uncharacterized protein LOC10 0.958 0.942 0.811 0.0
224118894467 predicted protein [Populus trichocarpa] 0.960 0.942 0.785 0.0
449477080467 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.960 0.942 0.765 0.0
356563099466 PREDICTED: uncharacterized protein LOC10 0.960 0.944 0.771 0.0
449440911474 PREDICTED: uncharacterized protein LOC10 0.960 0.928 0.754 0.0
356563101460 PREDICTED: uncharacterized protein LOC10 0.947 0.943 0.767 0.0
217073444465 unknown [Medicago truncatula] 0.962 0.948 0.768 0.0
388500664465 unknown [Medicago truncatula] 0.962 0.948 0.766 0.0
356511601466 PREDICTED: uncharacterized protein LOC10 0.960 0.944 0.758 0.0
>gi|224132996|ref|XP_002321460.1| predicted protein [Populus trichocarpa] gi|222868456|gb|EEF05587.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/451 (79%), Positives = 397/451 (88%), Gaps = 11/451 (2%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           M+WRRVLKSVQA+AAH LL +FTL LVLKLDHV+SYSWW++FFP+W FH VVARGRFSLP
Sbjct: 1   MNWRRVLKSVQALAAHCLLFSFTLFLVLKLDHVVSYSWWLIFFPLWTFHVVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APSVP NRHWAPCHA+VATPLLIAFELLLCIYLES+Y +   AVNLKIVF+PLLAFE+ I
Sbjct: 61  APSVPRNRHWAPCHAVVATPLLIAFELLLCIYLESVYVYHIAAVNLKIVFIPLLAFEVII 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLL 180
           LIDNFRMC+ALMPG+EES++DEAIWE LP           HFWVAISMVFFVAATVFTLL
Sbjct: 121 LIDNFRMCKALMPGEEESISDEAIWETLP-----------HFWVAISMVFFVAATVFTLL 169

Query: 181 KLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSG 240
           KL G VGALGWWDLFINF IAECFAFLVCTKWSNPVIHR+ QTR A+SS  I YLDWN G
Sbjct: 170 KLGGDVGALGWWDLFINFSIAECFAFLVCTKWSNPVIHRNSQTREASSSMTIRYLDWNGG 229

Query: 241 LVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLF 300
           L+VS EE Q+ D MCGL DIGGH+MK+P+IGFQVLLCMHLEGTPAGARNI L VLFSPLF
Sbjct: 230 LMVSPEENQHQDRMCGLQDIGGHLMKIPLIGFQVLLCMHLEGTPAGARNIPLLVLFSPLF 289

Query: 301 LLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEG 360
           LLQG GV+F+ ++L EK+V+LLRS AGTG YF  SSRAHDC GFLH GSRLLGWWSIDEG
Sbjct: 290 LLQGAGVLFAASKLAEKLVLLLRSEAGTGRYFTFSSRAHDCLGFLHHGSRLLGWWSIDEG 349

Query: 361 SREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEF 420
           S+E+QARL H   + YNTFCGYPPE+VKKMPKK+LAEEVWRLQAALG+Q+EIT YS+QEF
Sbjct: 350 SQEEQARLYHMGDASYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEF 409

Query: 421 ERLQNEKVLCRVCFEGDISVVLLPCRHRILC 451
           ERLQNEKVLCRVCFEG+ISVVLLPCRHRILC
Sbjct: 410 ERLQNEKVLCRVCFEGEISVVLLPCRHRILC 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455850|ref|XP_002273782.1| PREDICTED: uncharacterized protein LOC100256061 [Vitis vinifera] gi|297734166|emb|CBI15413.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224118894|ref|XP_002317932.1| predicted protein [Populus trichocarpa] gi|222858605|gb|EEE96152.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449477080|ref|XP_004154923.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101215825 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563099|ref|XP_003549803.1| PREDICTED: uncharacterized protein LOC100791390 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449440911|ref|XP_004138227.1| PREDICTED: uncharacterized protein LOC101215825 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563101|ref|XP_003549804.1| PREDICTED: uncharacterized protein LOC100791390 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|217073444|gb|ACJ85081.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388500664|gb|AFK38398.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356511601|ref|XP_003524512.1| PREDICTED: uncharacterized protein LOC100810936 isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
TAIR|locus:2014089467 AT1G18470 [Arabidopsis thalian 0.962 0.944 0.701 1.1e-172
TAIR|locus:2031471466 AT1G73950 [Arabidopsis thalian 0.954 0.937 0.705 1.8e-172
TAIR|locus:2012453468 AT1G68820 [Arabidopsis thalian 0.943 0.923 0.629 2.4e-154
TAIR|locus:2014089 AT1G18470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1678 (595.7 bits), Expect = 1.1e-172, P = 1.1e-172
 Identities = 318/453 (70%), Positives = 366/453 (80%)

Query:     1 MSWRRVLKSVQAVAAHSXXXXXXXXXXXXXDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
             MS RRVLKS+QA+AAHS             DH +S SWW+VFFP+W FHAVVARGRFSLP
Sbjct:     1 MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMVFFPLWAFHAVVARGRFSLP 60

Query:    61 APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
             AP  P NRHWAPCHA+VATPLL+AFELLLCIYLES Y     AV+LKI FLPLLAFE+TI
Sbjct:    61 APVAPRNRHWAPCHAVVATPLLVAFELLLCIYLESSYARWPPAVSLKIAFLPLLAFELTI 120

Query:   121 LIDNFRMCRALMPGDEESMNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLL 180
             L+DN RMCRALMPGD++S+ D+AIWEALP           HFWVAISMVF +AAT FTLL
Sbjct:   121 LVDNLRMCRALMPGDDDSITDDAIWEALP-----------HFWVAISMVFTLAATFFTLL 169

Query:   181 KLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSS-AITYLDWNS 239
             KL G V ALGWWDLFINFGIAECFAFLVCTKWSNPVIHRS + R   SSS +I YLDWNS
Sbjct:   170 KLSGDVVALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSSRARETGSSSTSIRYLDWNS 229

Query:   240 GLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPL 299
             GLVV+ EE+++ D  CGL DIGGH++K+PVI FQV+LCM+LEGTP  A++I++PVLFSPL
Sbjct:   230 GLVVAPEEDRHQDRWCGLQDIGGHMLKIPVILFQVVLCMYLEGTPERAKDISIPVLFSPL 289

Query:   300 FLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDE 359
             FLLQG+GV+F+ ++L+EKIV+LLR  AG G+YFR SS AHDC GFLH GSRLLGWWSIDE
Sbjct:   290 FLLQGLGVLFAASKLLEKIVLLLRGEAGPGLYFRFSSSAHDCLGFLHHGSRLLGWWSIDE 349

Query:   360 GSREDQARLVHENSSGYNTFCGYXXXXXXXXXXXXLAEEVWRLQAALGQQSEITNYSRQE 419
             GSRE+QARL  +  SGYNTF G+            LAEEVWRLQAALG+Q+EIT +S+QE
Sbjct:   350 GSREEQARLYFDQESGYNTFSGHPPEIVKKMPKEDLAEEVWRLQAALGEQTEITKFSQQE 409

Query:   420 FERLQNEKVLCRVCFEGDISVVLLPCRHRILCR 452
             +ERLQNEKVLCRVCFE DIS+VLLPCRHR+LCR
Sbjct:   410 YERLQNEKVLCRVCFEKDISLVLLPCRHRVLCR 442
GO:0005576 "extracellular region" evidence=ISM
GO:0005739 "mitochondrion" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2031471 AT1G73950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012453 AT1G68820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
pfam10269226 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F p 9e-60
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 2e-06
pfam10269226 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F p 0.001
>gnl|CDD|220666 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F protein Back     alignment and domain information 
 Score =  194 bits (496), Expect = 9e-60
 Identities = 92/278 (33%), Positives = 119/278 (42%), Gaps = 55/278 (19%)

Query: 28  LKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFEL 87
           L+LD  IS+SWW VF P+WI+  VV  G F L A  V  N   A    +V   LL+AFEL
Sbjct: 1   LRLDGYISWSWWAVFAPLWIWKLVVLLGAFLLIAS-VSRNEFKAMLIGLVCHLLLLAFEL 59

Query: 88  LLCIYLESIYEHGFEAVNLKIVFLPLLA---FEITILIDNFRMCRALMPGDEESMNDEAI 144
           L+CI L         A+   IVF+PL A     I IL+  FR   +          D + 
Sbjct: 60  LVCIKLG-----LSGALLWSIVFIPLYALSVLSILILLWGFRFTMS----------DRSY 104

Query: 145 WEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECF 204
              L            +    +  VF +A   F  LKL G V    WW +FI   I    
Sbjct: 105 ELELF-----------YAVNILQFVFAIAFFTFLALKLDGVV-DWSWWVVFIPLWIVLGL 152

Query: 205 AFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHI 264
           AFLV                      +I  L  N  L+VS +E      +  LS      
Sbjct: 153 AFLVV---------------LYLVIMSIRLLREN-NLLVSQDERALASAIGYLS----IF 192

Query: 265 MKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLL 302
           + +P++ FQVLL M L+G      NI + VLF PLF+L
Sbjct: 193 IVIPMLVFQVLLEMRLDGDN----NIPIIVLFIPLFVL 226

This is a family of conserved transmembrane proteins that appear in humans to be expressed from a region upstream of the FragileXF site and to be intimately linked with the Fragile-X syndrome. Absence of TMEM185A does not necessarily lead to developmental delay, but might in combination with other, yet unknown, factors. Otherwise, the lack of the TMEM185A protein is either disposable (redundant) or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B. Length = 226
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|220666 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 458
PF10269238 Tmemb_185A: Transmembrane Fragile-X-F protein ; In 100.0
KOG3879267 consensus Predicted membrane protein [Function unk 100.0
KOG3879267 consensus Predicted membrane protein [Function unk 99.75
PF10269238 Tmemb_185A: Transmembrane Fragile-X-F protein ; In 99.42
KOG1101147 consensus Apoptosis inhibitor IAP1 and related BIR 98.34
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 98.3
KOG1100207 consensus Predicted E3 ubiquitin ligase [Posttrans 98.3
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 98.24
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 97.96
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 97.43
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 96.8
smart0023871 BIR Baculoviral inhibition of apoptosis protein re 95.52
cd0002269 BIR Baculoviral inhibition of apoptosis protein re 95.2
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 95.12
PF0065370 BIR: Inhibitor of Apoptosis domain; InterPro: IPR0 94.97
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 94.68
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 93.69
KOG1785 563 consensus Tyrosine kinase negative regulator CBL [ 93.19
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 92.36
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 92.19
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 91.29
PF1463444 zf-RING_5: zinc-RING finger domain 89.11
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 89.0
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 87.41
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 86.96
PHA02929238 N1R/p28-like protein; Provisional 86.27
cd0016245 RING RING-finger (Really Interesting New Gene) dom 85.64
COG5236 493 Uncharacterized conserved protein, contains RING Z 81.41
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 81.08
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome Back     alignment and domain information 
Probab=100.00  E-value=1.6e-44  Score=351.97  Aligned_cols=236  Identities=46%  Similarity=0.764  Sum_probs=189.3

Q ss_pred             HhcCCccccchhHHHHHHHHHHHHHHhccccCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHhccccccccccccee
Q 012685           28 LKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLK  107 (458)
Q Consensus        28 LKLDg~I~wsWwiVFiPLWi~~~lv~~g~~~~~~~~~~~~~~wa~~~~~v~llLLl~FelLLc~kLe~~~~~~~~~~~~~  107 (458)
                      ||+||.++||||.||+|+|++++++++|.+........+++.++.+++....+++++||+|+|.||++...     .+|.
T Consensus         1 LrlD~~i~wsww~VF~Plw~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~lll~~f~~llc~~L~~~~~-----~~w~   75 (238)
T PF10269_consen    1 LRLDGVISWSWWIVFIPLWIWKAIVIVGAFVGIAVSRPRVDFKAMLISVVAHLLLLAFELLLCIKLEGGSS-----ISWS   75 (238)
T ss_pred             CccCceeeccHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCc-----ceee
Confidence            69999999999999999999999999988655544455666677777777778999999999999965555     7999


Q ss_pred             eehhhHHHHHHHHHHHHHHHhhhcCCCCCCcccchhhhccCCcchHHHHHHhhHHHHHHHHHHHHHHHhhhheeecCccc
Q 012685          108 IVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPVSSVELAISNMHFWVAISMVFFVAATVFTLLKLCGYVG  187 (458)
Q Consensus       108 ~VFiPL~ill~~~i~~~~r~c~~~~p~~~e~~~~~~iw~~~~~rs~e~~~~~~~~~~~i~~~~~~~f~IfLaLKLDg~~i  187 (458)
                      +||+|+|++.+..+...+...|. +||++|+++++++|...+           +++..++++++++|++|++|||||. +
T Consensus        76 ~VFiPL~~l~~~~I~~~i~~~r~-~~~~~e~~~~~~~~~~~~-----------~~~~~l~~if~~~f~v~l~Lkld~~-i  142 (238)
T PF10269_consen   76 IVFIPLFVLSALSILICIWNFRH-MPGDGEEMSDRSIWFELP-----------FFWNILSLIFFLAFTVFLALKLDGV-I  142 (238)
T ss_pred             eeeechhhHHHHHHHHHHHhhcc-CcccccCCCCchhhhhhh-----------HHHHHHHHHHHHHHHHHHHHhcCCc-c
Confidence            99999988886665444333333 999999999888776555           7889999999999999999999999 9


Q ss_pred             ccceeehhhhHHHHHhhHhheecccCCCcccCCCCCCCCCCccchhhhcccccccccccccCCCCCccchhhhhh--HHh
Q 012685          188 ALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGG--HIM  265 (458)
Q Consensus       188 ~w~Ww~VFIPlwi~d~~~~lvc~~~~~p~i~~~~~~~~~~~~~~l~y~~w~~~~~~~~~e~~~q~r~~~~~~i~~--~ll  265 (458)
                      +||||+||+|+|++||+++++|....               ...+++.+|+++...      +|++.+....+++  +++
T Consensus       143 ~~sW~~vFiPl~i~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  201 (238)
T PF10269_consen  143 DWSWWIVFIPLWIADGLAFLVCLYSI---------------IMSIRYLDRNPGLLP------SQRRSSLQSRICWGGLFL  201 (238)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHhccCCCch------hhHHHHHHHHHHHHHHHH
Confidence            99999999999999999988642211               113345555544433      3444444445555  999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCccchhhhHHHHHH
Q 012685          266 KVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLL  302 (458)
Q Consensus       266 ~ipll~FqiLLc~kLeg~~~~~~~~~~~~Vf~PL~il  302 (458)
                      ++|+++||++||+||||++.+++++|+.+||+|||++
T Consensus       202 ~i~~l~F~vLL~~kLe~~~~~~~~~~~~~vf~PL~i~  238 (238)
T PF10269_consen  202 VIPLLVFQVLLCMKLEGTPWSAANIPISVVFIPLFIL  238 (238)
T ss_pred             HHHHHHHHHHHHHHhcCCccccccccHHHHHHHHHhC
Confidence            9999999999999999977666799999999999974

The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
>KOG3879 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3879 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome Back     alignment and domain information
>KOG1101 consensus Apoptosis inhibitor IAP1 and related BIR domain proteins [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat Back     alignment and domain information
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
4ic3_A74 Crystal Structure Of The F495l Mutant Xiap Ring Dom 3e-04
4ic2_A74 Crystal Structure Of The Xiap Ring Domain Length = 3e-04
2ecg_A75 Solution Structure Of The Ring Domain Of The Baculo 3e-04
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain Length = 74 Back     alignment and structure 
Iteration: 1

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 409 QSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCR 452
           Q EI+  + ++  RLQ EK LC++C + +I++V +PC H + C+
Sbjct: 9   QKEIS--TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCK 49
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain Length = 74 Back     alignment and structure
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap Repeat-Containing Protein 4 From Homo Sapiens Length = 75 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 2e-09
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 1e-08
2ea5_A68 Cell growth regulator with ring finger domain prot 5e-08
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 3e-05
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure
 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 410 SEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCR 452
           ++ T   +++  +L+ E +LC VC E +I+    PC H + C 
Sbjct: 2   AQQTRVLQEKLRKLK-EAMLCMVCCEEEINSTFCPCGHTVCCE 43
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
3t6p_A 345 Baculoviral IAP repeat-containing protein 2; ring, 99.38
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 98.57
2ea5_A68 Cell growth regulator with ring finger domain prot 98.43
3mup_A122 Baculoviral IAP repeat-containing protein 2; zinc- 98.29
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 98.29
3hl5_A95 Baculoviral IAP repeat-containing protein 4; BIR, 98.25
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 98.17
3d9t_A97 Baculoviral IAP repeat-containing protein 2; zinc 98.13
1jd5_A124 DIAP1, apoptosis 1 inhibitor; IAP, caspase activat 98.11
2i3h_A133 Baculoviral IAP repeat-containing protein 7; zinc 98.1
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 98.1
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 98.02
1g73_C121 Inhibitors of apoptosis-like protein ILP; helix bu 97.92
2vm5_A106 Baculoviral IAP repeat-containing protein 1; apopt 97.79
2qfa_A142 Baculoviral IAP repeat-containing protein 5; three 97.65
2poi_A94 Baculoviral IAP repeat-containing protein 4; zinc 97.11
1se0_A116 Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas 97.09
3m1d_A85 Baculoviral IAP repeat-containing protein 2; BIR, 97.09
2qra_D111 XIAP, baculoviral IAP repeat-containing protein 4, 97.03
1i4o_C141 X-linked IAP, baculoviral IAP repeat-containing pr 96.79
3siq_A136 Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 96.79
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 96.44
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 96.07
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 96.07
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 95.91
1z6u_A150 NP95-like ring finger protein isoform B; structura 95.69
2ysj_A63 Tripartite motif-containing protein 31; ring-type 95.64
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 95.62
2ysl_A73 Tripartite motif-containing protein 31; ring-type 95.61
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 95.56
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 95.4
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 95.21
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 95.0
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 94.82
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 94.78
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 94.63
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 94.54
2ecw_A85 Tripartite motif-containing protein 30; metal bind 94.52
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 94.51
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 94.42
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 94.12
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 94.08
2ecm_A55 Ring finger and CHY zinc finger domain- containing 94.08
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 93.91
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 93.68
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 93.68
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 93.34
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 92.9
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 92.9
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 92.82
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 92.68
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 92.67
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 92.47
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 92.44
2ect_A78 Ring finger protein 126; metal binding protein, st 92.29
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 92.25
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 92.23
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 91.82
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 91.21
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 90.8
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 90.53
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 89.94
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 89.35
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 86.91
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 84.14
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
Probab=99.38  E-value=1.7e-13  Score=139.38  Aligned_cols=50  Identities=18%  Similarity=0.357  Sum_probs=45.4

Q ss_pred             ccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHH
Q 012685          338 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW  400 (458)
Q Consensus       338 ~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~v~~~~~~e~~qe~~  400 (458)
                      ..|-+.=.+||+.|.+ |+++||||+||+||+|+        |    .+|+.+||+||+++++
T Consensus        37 ~~D~v~Cf~C~~~l~~-We~~DdP~~eH~~~~p~--------C----~f~~~~kg~~~i~~~~   86 (345)
T 3t6p_A           37 RNDDVKCFSCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQ   86 (345)
T ss_dssp             STTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHH
T ss_pred             CCCeEEecCCCCCccC-CCCCCCHHHHHHHhCCC--------C----ccHHHhccHHHHHHHH
Confidence            3788889999999999 99999999999999999        9    8888999999987655
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A* Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A Back     alignment and structure
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A Back     alignment and structure
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A* Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A Back     alignment and structure
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens} Back     alignment and structure
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ... Back     alignment and structure
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B Back     alignment and structure
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E Back     alignment and structure
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D Back     alignment and structure
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens} Back     alignment and structure
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A Back     alignment and structure
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
d2vsla196 BIR domains of XIAP {Human (Homo sapiens) [TaxId: 98.18
d3d9ta187 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} 98.08
d2i3ha190 BIR-containing protein 7 (ML-IAP, livin) {Human (H 98.06
d1jd5a_105 BIR domains of DIAP1 {Fruit fly (Drosophila melano 97.96
d2qfaa1137 Anti-apoptotic protein survivin {Human (Homo sapie 97.81
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 97.05
d1se0a_97 BIR domains of DIAP1 {Fruit fly (Drosophila melano 96.22
d1i3oe_111 BIR domains of XIAP {Human (Homo sapiens) [TaxId: 95.99
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 95.51
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 93.95
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 93.86
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 93.82
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 92.19
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 89.48
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 87.47
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 86.22
d2c2la280 STIP1 homology and U box-containing protein 1, STU 85.33
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 85.08
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 84.71
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 82.14
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.9e-07  Score=76.71  Aligned_cols=51  Identities=20%  Similarity=0.343  Sum_probs=46.6

Q ss_pred             cccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHH
Q 012685          337 RAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW  400 (458)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~v~~~~~~e~~qe~~  400 (458)
                      ...|-+.=.+||..|.+ |+++|+||+||++++|+        |    ++|+.+||++++++++
T Consensus        44 g~~D~v~Cf~C~~~l~~-W~~~D~P~~eH~~~~p~--------C----~fv~~~kg~~~v~~v~   94 (96)
T d2vsla1          44 GEGDKVKCFHCGGGLTD-WKPSEDPWEQHAKWYPG--------C----KYLLEQKGQEYINNIH   94 (96)
T ss_dssp             SSTTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----HHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEeccCCCEeCC-CCCCCCHHHHHHHHCcC--------C----eehHhccChhhhhccc
Confidence            34678888899999999 99999999999999999        9    9999999999998874
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure