BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012687
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FD8|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
pdb|2FDF|A Chain A, Crystal Structure Of Alkb In Complex With Co(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
pdb|2FDG|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
Succinate, And Methylated Trinucleotide T-Mea-T
pdb|2FDH|A Chain A, Crystal Structure Of Alkb In Complex With Mn(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
pdb|2FDI|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
(Air 3 Hours)
pdb|2FDJ|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii) And
Succinate
pdb|2FDK|A Chain A, Crystal Structure Of Alkb In Complex With Fe(ii),
2-oxoglutarate, And Methylated Trinucleotide T-mea-t
(air 9 Days)
pdb|3I2O|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate And Methylated Trinucleotide T-Mea-T
pdb|3I3M|A Chain A, Crystal Structure Of Alkb In Complex With Mn(Ii),
2-Oxoglutarate And Methylated Trinucleotide T-Mec-T
pdb|3I3Q|A Chain A, Crystal Structure Of Alkb In Complex With Mn(Ii) And
2-Oxoglutarate
pdb|3I3Q|B Chain B, Crystal Structure Of Alkb In Complex With Mn(Ii) And
2-Oxoglutarate
pdb|3I49|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate And Methylated Trinucleotide T-Mec-T
Length = 211
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 36/166 (21%)
Query: 292 DPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI 351
DPQT K +P F L QR+ + A P PD
Sbjct: 72 DPQTNK----------PWPAMPQSFHNLCQRAATAAG---------------YPDFQPDA 106
Query: 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLES 411
C++N Y +L LHQD+DE L+ P+VS S+G A F +G + + +++LLE
Sbjct: 107 CLINRYAPGAKLSLHQDKDEP--DLRA--PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEH 162
Query: 412 GDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
GDV+++GGESR +HG+ + P + R NLTFRQ
Sbjct: 163 GDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 201
>pdb|3KHB|A Chain A, Crystal Structure Of Escherichia Coli Alkb With Co(Ii) And
2-Og
pdb|3KHB|B Chain B, Crystal Structure Of Escherichia Coli Alkb With Co(Ii) And
2-Og
Length = 219
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 36/166 (21%)
Query: 292 DPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI 351
DPQT K +P F L QR+ + A P PD
Sbjct: 85 DPQTNKPW----------PAMPQSFHNLCQRAATAAG---------------YPDFQPDA 119
Query: 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLES 411
C++N Y +L LHQD+DE P+VS S+G A F +G + + +++LLE
Sbjct: 120 CLINRYAPGAKLSLHQDKDEPDLRA----PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEH 175
Query: 412 GDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
GDV+++GGESR +HG+ + P + R NLTFRQ
Sbjct: 176 GDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 214
>pdb|3T3Y|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Iii) And
2-(3- Hydroxypicolinomido)acetic Acid
pdb|3T4H|B Chain B, Crystal Structure Of Alkb In Complex With Fe(Iii) And
N-Oxalyl-S-(3- Nitrobenzyl)-L-Cysteine
pdb|3T4V|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Iii) And
N-Oxalyl-S-(2- Napthalenemethyl)-L-Cysteine
Length = 206
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 36/166 (21%)
Query: 292 DPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI 351
DPQT K +P F L QR+ + A P PD
Sbjct: 72 DPQTNK----------PWPAMPQSFHNLCQRAATAAG---------------YPDFQPDA 106
Query: 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLES 411
C++N Y +L LHQD+DE P+VS S+G A F +G + + +++LLE
Sbjct: 107 CLINRYAPGAKLSLHQDKDEPDLRA----PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEH 162
Query: 412 GDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
GDV+++GGESR +HG+ + P + R NLTFRQ
Sbjct: 163 GDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 201
>pdb|3O1M|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1O|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1P|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1R|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1S|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1T|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1U|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1V|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
Length = 206
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 36/166 (21%)
Query: 292 DPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI 351
DPQT K +P F L QR+ + A P PD
Sbjct: 72 DPQTNK----------PWPAMPQSFHNLCQRAATAAG---------------YPDFQPDA 106
Query: 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLES 411
C++N Y +L LHQD+DE P+VS S+G A F +G + + +++LLE
Sbjct: 107 CLINRYAPGAKLCLHQDKDEPDLRA----PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEH 162
Query: 412 GDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
GDV+++GGESR +HG+ + P + R NLTFRQ
Sbjct: 163 GDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 201
>pdb|3BI3|A Chain A, X-Ray Structure Of Alkb Protein Bound To Dsdna Containing
1meaA WITH Cofactors
Length = 201
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 36/166 (21%)
Query: 292 DPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI 351
DPQT K +P F L QR+ + A P PD
Sbjct: 70 DPQTNK----------PWPAMPQSFHNLCQRAATAAG---------------YPDFQPDA 104
Query: 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLES 411
C++N Y +L LHQD+DE L+ P+VS S+G A F +G + + +++LLE
Sbjct: 105 CLINRYAPGAKLCLHQDKDEP--DLRA--PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEH 160
Query: 412 GDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
GDV+++GGESR +HG+ + P + R NLTFRQ
Sbjct: 161 GDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 199
>pdb|3BIE|A Chain A, X-Ray Structure Of E Coli Alkb Bound To Dsdna Containing
1meaT WITH Mn And 2kg
Length = 202
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 36/166 (21%)
Query: 292 DPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI 351
DPQT K +P F L QR+ + A P PD
Sbjct: 70 DPQTNK----------PWPAMPQSFHNLCQRAATAAG---------------YPDFQPDA 104
Query: 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLES 411
C++N Y +L LHQD+DE L+ P+VS S+G A F +G + + +++LLE
Sbjct: 105 CLINRYAPGAKLCLHQDKDEP--DLRA--PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEH 160
Query: 412 GDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
GDV+++GGESR +HG+ + P + R NLTFRQ
Sbjct: 161 GDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 199
>pdb|3KHC|A Chain A, Crystal Structure Of Escherichia Coli Alkb In Complex With
Ssdna Containing A 1-Methylguanine Lesion
pdb|3KHC|B Chain B, Crystal Structure Of Escherichia Coli Alkb In Complex With
Ssdna Containing A 1-Methylguanine Lesion
Length = 219
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 36/166 (21%)
Query: 292 DPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI 351
DPQT K +P F L QR+ + A P PD
Sbjct: 85 DPQTNKPW----------PAMPQSFHNLCQRAATAAG---------------YPDFQPDA 119
Query: 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLES 411
C++N Y +L LHQD+ E P+VS S+G A F +G + + +++LLE
Sbjct: 120 CLINRYAPGAKLSLHQDKAEPDLRA----PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEH 175
Query: 412 GDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
GDV+++GGESR +HG+ + P + R NLTFRQ
Sbjct: 176 GDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 214
>pdb|3BKZ|A Chain A, X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna In The
Active Site
Length = 201
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 36/166 (21%)
Query: 292 DPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI 351
DPQT K +P F L QR+ + A P PD
Sbjct: 69 DPQTNK----------PWPAMPQSFHNLCQRAATAAG---------------YPDFQPDA 103
Query: 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLES 411
C++N Y +L LHQD+ E L+ P+VS S+G A F +G + + +++LLE
Sbjct: 104 CLINRYAPGAKLSLHQDKCEP--DLRA--PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEH 159
Query: 412 GDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
GDV+++GGESR +HG+ + P + R NLTFRQ
Sbjct: 160 GDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 198
>pdb|1T70|A Chain A, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|B Chain B, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|C Chain C, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|D Chain D, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|E Chain E, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|F Chain F, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|G Chain G, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|H Chain H, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
Length = 255
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 340 VEDILPALSP--DICIVNFYNTSGRLGLHQDRDESRYSLKKG 379
+++ LP + P D IVN N++G G+H RD +R +L+ G
Sbjct: 18 LQNHLPTIRPQFDFVIVNMENSAGGFGMH--RDAARGALEAG 57
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 392 EFLYGDERDANKAEKVL--LESGDVLIFGGESRHVFHGVSSINPNSAPGALLEN 443
E+ +GDER AE++L + +GD ++ G H V+++ P+ A G LL
Sbjct: 115 EWRHGDERARTLAERILRGMVAGDAVVCSGIKDH-HTAVTTLRPDGAGGWLLSG 167
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 33/120 (27%)
Query: 344 LPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKK------GLPVVSFSVGDSAEFLYGD 397
+P L P+I +F N S G + + + R +LK+ GLP++SF+ G+S+
Sbjct: 14 IPKL-PNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESS------ 66
Query: 398 ERDANKAEKVLLESGDVLIFGGES-------RHVFHGVSSINPNS-------APGALLEN 443
+KA + +++ GG + VF + NPNS P LLEN
Sbjct: 67 -LSFSKALNI-----GIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEN 120
>pdb|2FJ0|A Chain A, Crystal Structure Of Juvenile Hormone Esterase From
Manduca Sexta, With Otfp Covalently Attached
Length = 551
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 370 DESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVS 429
D++R++ GLPV+ F G F GD D + E L S DV++ R +G
Sbjct: 108 DKNRFA---GLPVLVFIHGGGFAFGSGDS-DLHGPE--YLVSKDVIVITFNYRLNVYGFL 161
Query: 430 SINPNSAPG 438
S+N S PG
Sbjct: 162 SLNSTSVPG 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,100,898
Number of Sequences: 62578
Number of extensions: 589963
Number of successful extensions: 1195
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 13
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)