BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012687
(458 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37462|ALKB_SALTY Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=alkB PE=3 SV=2
Length = 216
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 11/112 (9%)
Query: 346 ALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAE 405
+ PD C++N Y +L LHQD+DE L+ P+VS S+G A F +G R ++ +
Sbjct: 111 SFQPDACLINRYAPGAKLSLHQDKDEP--DLRA--PIVSVSLGVPAVFQFGGLRRSDPIQ 166
Query: 406 KVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
++LLE GD++++GGESR +HG+ + P M R NLTFRQ
Sbjct: 167 RILLEHGDIVVWGGESRLFYHGIQPLKAGFHP-------MTGEFRYNLTFRQ 211
>sp|P05050|ALKB_ECOLI Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Escherichia coli
(strain K12) GN=alkB PE=1 SV=1
Length = 216
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 36/166 (21%)
Query: 292 DPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI 351
DPQT K +P F L QR+ + A P PD
Sbjct: 82 DPQTNKPW----------PAMPQSFHNLCQRAATAAG---------------YPDFQPDA 116
Query: 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLES 411
C++N Y +L LHQD+DE P+VS S+G A F +G + + +++LLE
Sbjct: 117 CLINRYAPGAKLSLHQDKDEPDLRA----PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEH 172
Query: 412 GDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
GDV+++GGESR +HG+ + P + R NLTFRQ
Sbjct: 173 GDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 211
>sp|P0CAT7|ALKB_CAUCR Alpha-ketoglutarate-dependent dioxygenase AlkB homolog
OS=Caulobacter crescentus (strain ATCC 19089 / CB15)
GN=alkB PE=3 SV=1
Length = 220
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 92/227 (40%), Gaps = 41/227 (18%)
Query: 238 PGMVLLKHYLTIREQ-ILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQT 295
PG + L I Q L+ + + P Y+ Y G + + M LG L W
Sbjct: 24 PGFDVWPGLLDISAQRALVEAVLAGAEQAPFSNYRTAY--GKPMSVAMTALGSLGWTSDA 81
Query: 296 RKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDIL--PALSPDICI 353
R Y + V R M + ++ +L P PD C+
Sbjct: 82 RGY-------------------RYVDRHPETGRPWPDMPPALLDLWTVLGDPETPPDSCL 122
Query: 354 VNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGD 413
VN Y R+GLHQDRDE+ PV+S S+GD+A F G + + L SGD
Sbjct: 123 VNLYRDGARMGLHQDRDEA----DPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGD 178
Query: 414 VLIFGGESRHVFHGVSSINPNSA---PGALLENTMLRPGRLNLTFRQ 457
V G +R FHGV I P S+ PG GR+NLT R+
Sbjct: 179 VCRLLGPARLAFHGVDRILPGSSSLVPGG---------GRINLTLRR 216
>sp|B8GWW6|ALKB_CAUCN Alpha-ketoglutarate-dependent dioxygenase AlkB homolog
OS=Caulobacter crescentus (strain NA1000 / CB15N)
GN=alkB PE=3 SV=2
Length = 220
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 92/227 (40%), Gaps = 41/227 (18%)
Query: 238 PGMVLLKHYLTIREQ-ILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQT 295
PG + L I Q L+ + + P Y+ Y G + + M LG L W
Sbjct: 24 PGFDVWPGLLDISAQRALVEAVLAGAEQAPFSNYRTAY--GKPMSVAMTALGSLGWTSDA 81
Query: 296 RKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDIL--PALSPDICI 353
R Y + V R M + ++ +L P PD C+
Sbjct: 82 RGY-------------------RYVDRHPETGRPWPDMPPALLDLWTVLGDPETPPDSCL 122
Query: 354 VNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGD 413
VN Y R+GLHQDRDE+ PV+S S+GD+A F G + + L SGD
Sbjct: 123 VNLYRDGARMGLHQDRDEA----DPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGD 178
Query: 414 VLIFGGESRHVFHGVSSINPNSA---PGALLENTMLRPGRLNLTFRQ 457
V G +R FHGV I P S+ PG GR+NLT R+
Sbjct: 179 VCRLLGPARLAFHGVDRILPGSSSLVPGG---------GRINLTLRR 216
>sp|O60066|ALKBH_SCHPO Alpha-ketoglutarate-dependent dioxygenase abh1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=abh1 PE=2 SV=3
Length = 302
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 78/182 (42%), Gaps = 28/182 (15%)
Query: 281 RLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNV 340
+LR + LG +D T++Y + G P + V++ + E+ + ++ +
Sbjct: 139 KLRWVTLGEQYDWTTKEYPDPSKSPG-----FPKDLGDFVEKVVKESTDFLHWKAEAA-- 191
Query: 341 EDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERD 400
IVNFY+ L H D E +L P++S S+G +L G E
Sbjct: 192 ------------IVNFYSPGDTLSAHIDESEEDLTL----PLISLSMGLDCIYLIGTESR 235
Query: 401 ANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPG-----RLNLTF 455
+ K + L SGDV+I G SR FH V I PNS P LL G R+N
Sbjct: 236 SEKPSALRLHSGDVVIMTGTSRKAFHAVPKIIPNSTPNYLLTGNKAWDGWISRKRVNFNV 295
Query: 456 RQ 457
RQ
Sbjct: 296 RQ 297
>sp|Q9SA98|ALKBH_ARATH Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis
thaliana GN=At1g11780 PE=2 SV=2
Length = 345
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 80/193 (41%), Gaps = 39/193 (20%)
Query: 279 KLRLRMMCLGLDWDPQTRKYGKKRQVDGCEP-SVIPSEFKQLVQRSMSEAHALIKMDSKV 337
KLR + L DW KR D P + IP QL ++ HA I M
Sbjct: 176 KLRWSTLGLQFDW--------SKRNYDVSLPHNNIPDALCQL-----AKTHAAIAMPDG- 221
Query: 338 SNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGD 397
P+ IVN++ LG H D E+ +S P+VS S+G A FL G
Sbjct: 222 -------EEFRPEGAIVNYFGIGDTLGGHLDDMEADWSK----PIVSMSLGCKAIFLLGG 270
Query: 398 ERDANKAEKVLLESGDVLIFGGESRHVFHGVSSI---NPNSAPGAL----------LENT 444
+ + + L SGDV++ GE+R FHG+ I N+ GAL
Sbjct: 271 KSKDDPPHAMYLRSGDVVLMAGEARECFHGIPRIFTGEENADIGALESELSHESGHFFAE 330
Query: 445 MLRPGRLNLTFRQ 457
++ R+N+ RQ
Sbjct: 331 YIKTSRININIRQ 343
>sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens
GN=ALKBH1 PE=1 SV=2
Length = 389
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 31/132 (23%)
Query: 353 IVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESG 412
I+N+Y LG+H DR E L P++SFS G SA FL G + + + SG
Sbjct: 218 ILNYYRLDSTLGIHVDRSE----LDHSKPLLSFSFGQSAIFLLGGLQRDEAPTAMFMHSG 273
Query: 413 DVLIFGGESRHVFHGVSSINPNSA------------PGALLENTMLRP------------ 448
D++I G SR + H V + PN P L ++M+ P
Sbjct: 274 DIMIMSGFSRLLNHAVPRVLPNPEGEGLPHCLEAPLPAVLPRDSMVEPCSMEDWQVCASY 333
Query: 449 ---GRLNLTFRQ 457
R+N+T RQ
Sbjct: 334 LKTARVNMTVRQ 345
>sp|Q54N08|ALKB_DICDI Alpha-ketoglutarate-dependent dioxygenase alkB OS=Dictyostelium
discoideum GN=alkB PE=2 SV=1
Length = 393
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 312 IPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDE 371
P + ++LVQ+ K D V+ + VNFY+ +G H D E
Sbjct: 239 FPDDLQELVQK----IAIATKFDPYVA-----------EAATVNFYSEDSIMGGHLDDAE 283
Query: 372 SRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSI 431
++K P++S S G +A FL G E + + SGD++I GG SR+ +HGV+ I
Sbjct: 284 QE--MEK--PIISISFGSTAVFLMGAETRDIAPVPLFIRSGDIVIMGGRSRYCYHGVAKI 339
Query: 432 NPNSAPGALLE 442
NS L++
Sbjct: 340 VENSFDLGLID 350
>sp|P0CB42|ALKB1_MOUSE Alkylated DNA repair protein alkB homolog 1 OS=Mus musculus
GN=Alkbh1 PE=1 SV=1
Length = 389
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 31/132 (23%)
Query: 353 IVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESG 412
I+N+Y LG+H DR E L P++SFS G SA FL G + + + SG
Sbjct: 218 ILNYYRLDSTLGIHVDRSE----LDHSKPLLSFSFGQSAIFLLGGLKRDEAPTAMFMHSG 273
Query: 413 DVLIFGGESRHVFHGVSSINPN------------SAPGALLEN---------------TM 445
D+++ G SR + H V + P+ P L N T
Sbjct: 274 DIMVMSGFSRLLNHAVPRVLPHPDGECLPHCLETPLPAVLPSNSLVEPCSVEDWQVCATY 333
Query: 446 LRPGRLNLTFRQ 457
LR R+N+T RQ
Sbjct: 334 LRTARVNMTVRQ 345
>sp|B1PS76|RDRP_LOLV RNA-directed RNA polymerase OS=Lolium latent virus (isolate
Lolium/USA/US1/-) GN=ORF1 PE=3 SV=1
Length = 1729
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 24/112 (21%)
Query: 348 SPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKA-EK 406
S D C++ Y R+GLH D DE Y +V+ ++ +A+FL ER+ +KA E
Sbjct: 741 SYDHCLIQRYRKHARVGLHAD-DEECYEPDST--IVTLNLYGNADFLI--ERNTDKASET 795
Query: 407 VLLESGDVLIF--GGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFR 456
+ L+ D+L G + H H V S L GR+++TFR
Sbjct: 796 ITLQHNDMLFMPSGMQVTHR-HAVCS---------------LYEGRVSITFR 831
>sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis
GN=alkbh8 PE=2 SV=2
Length = 628
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 36/163 (22%)
Query: 283 RMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVED 342
R M +DWD +T S K L R + + D+ + +
Sbjct: 151 RTMLESIDWDSET------------------SSQKSLKHRQVKHYGYEFRYDNNNVDKDK 192
Query: 343 ILPALSPDICIVNFYNTSGRLGLHQDRDE---SRYSLKKGLP------------VVSFSV 387
LP PD C R + D D+ ++Y +G+P ++S S+
Sbjct: 193 PLPGGLPDFCTEALRKCVQRGLIKHDPDQLTINQYEPGQGIPPHVDTHSAFEDEILSLSL 252
Query: 388 GDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVF-HGVS 429
G AE + + V+L +LI GESR+++ HG++
Sbjct: 253 G--AEIVMDFKHPNGSVVPVMLPQRSLLIMSGESRYLWTHGIT 293
>sp|Q67704|RDRP_GVAIS RNA replication protein OS=Grapevine virus A (isolate Is 151)
GN=ORF1 PE=3 SV=1
Length = 1707
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 348 SPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKV 407
S D C++ Y G +G H D DE Y G VV+ ++ A F E + K EK
Sbjct: 645 SYDHCLIQRYTAGGSIGFHAD-DEPCYL--PGGSVVTVNLHGDATFEV-KENQSGKIEKK 700
Query: 408 LLESGDVLIFG 418
L GDV + G
Sbjct: 701 ELHDGDVYVMG 711
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,571,330
Number of Sequences: 539616
Number of extensions: 8080136
Number of successful extensions: 17788
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17769
Number of HSP's gapped (non-prelim): 18
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)