Query 012687
Match_columns 458
No_of_seqs 189 out of 1159
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:15:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15401 alpha-ketoglutarate-d 100.0 1.2E-45 2.6E-50 353.1 20.6 197 234-458 14-213 (213)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 1.2E-36 2.5E-41 278.5 12.0 191 239-456 1-194 (194)
3 TIGR00568 alkb DNA alkylation 100.0 7.3E-35 1.6E-39 270.0 16.2 161 243-428 1-169 (169)
4 COG3145 AlkB Alkylated DNA rep 100.0 1.1E-30 2.4E-35 247.0 15.8 182 234-453 11-194 (194)
5 KOG3200 Uncharacterized conser 99.7 1.9E-17 4E-22 155.2 11.5 180 234-458 8-214 (224)
6 KOG4176 Uncharacterized conser 99.7 1.8E-17 3.8E-22 167.8 11.8 173 234-458 123-304 (323)
7 KOG2731 DNA alkylation damage 99.7 2.7E-17 5.8E-22 166.9 4.5 202 194-429 167-378 (378)
8 KOG2731 DNA alkylation damage 99.6 2.4E-15 5.1E-20 152.9 4.7 134 280-434 163-299 (378)
9 KOG3959 2-Oxoglutarate- and ir 98.8 3.1E-09 6.8E-14 104.2 5.8 175 234-457 68-276 (306)
10 smart00702 P4Hc Prolyl 4-hydro 97.6 0.0072 1.6E-07 55.4 17.3 90 347-456 80-176 (178)
11 PRK05467 Fe(II)-dependent oxyg 97.1 0.021 4.5E-07 56.2 15.5 85 351-456 81-175 (226)
12 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.0 0.00089 1.9E-08 55.4 4.4 83 349-457 1-96 (98)
13 PF13640 2OG-FeII_Oxy_3: 2OG-F 96.5 0.003 6.5E-08 52.3 3.8 84 352-456 1-98 (100)
14 PF12933 FTO_NTD: FTO catalyti 96.4 0.012 2.5E-07 58.8 8.0 94 344-457 133-250 (253)
15 TIGR01762 chlorin-enz chlorina 94.8 1.6 3.4E-05 44.2 16.4 26 236-261 12-37 (288)
16 PF09859 Oxygenase-NA: Oxygena 89.9 1.7 3.7E-05 41.6 8.3 76 351-431 63-158 (173)
17 PF12851 Tet_JBP: Oxygenase do 86.6 8.6 0.00019 36.3 10.8 93 347-456 74-168 (171)
18 PF13759 2OG-FeII_Oxy_5: Putat 78.7 1.9 4.1E-05 36.4 2.8 82 352-455 2-100 (101)
19 TIGR02466 conserved hypothetic 76.8 34 0.00074 33.3 11.2 116 314-455 64-196 (201)
20 COG3128 PiuC Uncharacterized i 74.5 8.8 0.00019 37.8 6.4 73 353-431 85-167 (229)
21 PLN00052 prolyl 4-hydroxylase; 60.6 35 0.00076 35.4 7.9 162 234-433 50-240 (310)
22 TIGR02408 ectoine_ThpD ectoine 58.9 63 0.0014 32.3 9.2 27 236-262 26-52 (277)
23 KOG0143 Iron/ascorbate family 57.2 1.1E+02 0.0024 31.6 10.9 108 305-423 122-244 (322)
24 PF08007 Cupin_4: Cupin superf 54.5 25 0.00054 36.0 5.6 62 350-421 112-192 (319)
25 PLN03001 oxidoreductase, 2OG-F 52.8 88 0.0019 31.4 9.1 60 351-423 117-182 (262)
26 PLN02750 oxidoreductase, 2OG-F 52.5 35 0.00075 35.4 6.3 61 350-421 193-259 (345)
27 PLN02515 naringenin,2-oxogluta 50.5 72 0.0016 33.4 8.3 61 350-421 195-261 (358)
28 PLN02639 oxidoreductase, 2OG-F 50.0 1.2E+02 0.0026 31.3 9.7 60 349-422 189-256 (337)
29 PLN02216 protein SRG1 47.9 1.3E+02 0.0028 31.5 9.7 60 350-421 210-275 (357)
30 PRK10572 DNA-binding transcrip 46.5 67 0.0014 31.4 7.0 71 343-425 14-87 (290)
31 PLN02904 oxidoreductase 44.6 1.9E+02 0.0041 30.3 10.3 59 350-421 208-272 (357)
32 PLN02758 oxidoreductase, 2OG-F 40.2 1.1E+02 0.0023 32.2 7.7 61 351-423 212-279 (361)
33 PLN02912 oxidoreductase, 2OG-F 39.6 1.4E+02 0.003 31.1 8.4 61 349-422 196-262 (348)
34 PLN02156 gibberellin 2-beta-di 38.8 2.4E+02 0.0053 29.3 10.0 62 350-423 178-247 (335)
35 COG3826 Uncharacterized protei 38.0 1.4E+02 0.0031 29.6 7.5 79 348-432 123-221 (236)
36 PLN02485 oxidoreductase 36.3 3.5E+02 0.0075 27.7 10.6 61 351-422 185-255 (329)
37 PLN02947 oxidoreductase 35.9 2.4E+02 0.0052 29.8 9.6 59 350-421 225-289 (374)
38 PLN02984 oxidoreductase, 2OG-F 35.4 1.8E+02 0.004 30.3 8.5 61 349-422 199-265 (341)
39 PLN02365 2-oxoglutarate-depend 35.4 1.3E+02 0.0029 30.5 7.3 65 349-423 148-218 (300)
40 PLN02704 flavonol synthase 34.8 89 0.0019 32.2 6.1 58 351-421 200-263 (335)
41 KOG1591 Prolyl 4-hydroxylase a 32.3 4.6E+02 0.0099 27.2 10.6 69 343-417 169-250 (289)
42 PF03079 ARD: ARD/ARD' family; 31.4 65 0.0014 30.3 4.0 37 387-425 99-135 (157)
43 PF07883 Cupin_2: Cupin domain 30.6 38 0.00082 25.7 2.0 54 356-425 4-57 (71)
44 PTZ00273 oxidase reductase; Pr 30.2 4.4E+02 0.0096 26.8 10.1 60 350-421 177-243 (320)
45 PLN02393 leucoanthocyanidin di 30.2 1.8E+02 0.0038 30.5 7.4 59 351-421 214-278 (362)
46 PLN02254 gibberellin 3-beta-di 28.4 2.6E+02 0.0056 29.4 8.2 60 351-422 211-276 (358)
47 PLN02403 aminocyclopropanecarb 26.8 4.4E+02 0.0096 27.0 9.5 56 352-421 155-219 (303)
48 TIGR00568 alkb DNA alkylation 25.8 65 0.0014 30.5 3.0 21 403-423 122-142 (169)
49 COG1917 Uncharacterized conser 25.8 1.9E+02 0.0042 25.1 5.8 61 349-425 41-102 (131)
50 PLN00417 oxidoreductase, 2OG-F 24.6 4.9E+02 0.011 27.2 9.4 60 351-422 204-269 (348)
51 PLN02299 1-aminocyclopropane-1 23.2 1.8E+02 0.004 29.9 5.9 61 351-423 159-225 (321)
52 COG1791 Uncharacterized conser 23.1 1.5E+02 0.0032 29.0 4.8 35 389-425 104-138 (181)
No 1
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=100.00 E-value=1.2e-45 Score=353.06 Aligned_cols=197 Identities=30% Similarity=0.553 Sum_probs=174.1
Q ss_pred cccCCceEEECCCCCHHHHHHHHHHHHHhcCCCCCCcCCccCCCceeeeEEEEec-cccCCCC--CcccCcccCCCCCCC
Q 012687 234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQT--RKYGKKRQVDGCEPS 310 (458)
Q Consensus 234 ~~l~PGLvLlpnFLS~eEQ~~Li~~l~e~~l~p~~~~qP~~~~G~klklR~v~lG-y~wd~dt--~~Ys~~~p~dg~p~p 310 (458)
..+.||++++++|. .++|++|+++|+++.. ..+|++|.++.|+.|.+||+||| ++|..|. |+|++.+|..+.+|+
T Consensus 14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~-~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp 91 (213)
T PRK15401 14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAA-QAPFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWP 91 (213)
T ss_pred eecCCCcEEeCCCC-HHHHHHHHHHHHHHHh-cCCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCC
Confidence 57899999999995 8999999999999633 37999999999999999999999 8997655 788877778899999
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecCCc
Q 012687 311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDS 390 (458)
Q Consensus 311 piP~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGss 390 (458)
+||++|.+|+++++..+ +++.+.||+||||+|++|++||||+|++|. +++.||||||||++
T Consensus 92 ~~P~~l~~L~~~~~~~~---------------~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~----~~~~pI~SvSLG~~ 152 (213)
T PRK15401 92 AMPASFLALAQRAAAAA---------------GFPGFQPDACLINRYAPGAKLSLHQDKDER----DFRAPIVSVSLGLP 152 (213)
T ss_pred CchHHHHHHHHHHHHHc---------------CCCCCCCCEEEEEeccCcCccccccCCCcc----cCCCCEEEEeCCCC
Confidence 99999999999876542 446789999999999999999999998764 36789999999999
Q ss_pred eeeeeecccCCCccEEEEcCCCCEEEecCCcccccccccccCCCCCCCccccccCCCCCeEEEEeecC
Q 012687 391 AEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY 458 (458)
Q Consensus 391 avF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFRqv 458 (458)
|+|+|++.++.+++.+|.|+|||||||+|++|++||||+++++.+.|. ...+|||||||++
T Consensus 153 ~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~-------~g~~RINLTFR~~ 213 (213)
T PRK15401 153 AVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPL-------TGECRINLTFRKA 213 (213)
T ss_pred eEEEecccCCCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCCC-------CCCCeEEEEeEcC
Confidence 999999877777788999999999999999999999999998887762 4668999999985
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=100.00 E-value=1.2e-36 Score=278.51 Aligned_cols=191 Identities=28% Similarity=0.538 Sum_probs=133.0
Q ss_pred ceEEECCCCCHHHHHHHHHHHHHhcCCCCCCcCCccCCCceeeeEEEEec-cccCC--CCCcccCcccCCCCCCCCCcHH
Q 012687 239 GMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDP--QTRKYGKKRQVDGCEPSVIPSE 315 (458)
Q Consensus 239 GLvLlpnFLS~eEQ~~Li~~l~e~~l~p~~~~qP~~~~G~klklR~v~lG-y~wd~--dt~~Ys~~~p~dg~p~ppiP~~ 315 (458)
|++|+++||+++||++|++.+.+. .+|.++.+..++.+..++..++ ..|.. ..|.|++..+....+++|+|++
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~ 76 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRES----APFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEW 76 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHH----S--B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhh----CCCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHH
Confidence 899999999999999999999976 5677776666665543322111 22222 2344544433456789999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecCCceeeee
Q 012687 316 FKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLY 395 (458)
Q Consensus 316 L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~f 395 (458)
|..+++++.+... ..+.+.||+||||+|.+|++|++|+|+++. +++.||++||||++|+|.|
T Consensus 77 l~~~~~~~~~~~~--------------~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~----~~~~~I~slSLG~~~~~~f 138 (194)
T PF13532_consen 77 LSRLLERLVEATG--------------IPPGWRPNQCLINYYRDGSGIGPHSDDEEY----GFGPPIASLSLGSSRVFRF 138 (194)
T ss_dssp HHHHHHHHHHHHT---------------SHSS--SEEEEEEESSTT-EEEE---TTC-----CCSEEEEEEEES-EEEEE
T ss_pred HHHHHHHHHHHhc--------------cccCCCCCEEEEEecCCCCCcCCCCCcccc----cCCCcEEEEEEccCceEEE
Confidence 9999999865421 134678999999999999999999999853 4689999999999999999
Q ss_pred ecccCCCccEEEEcCCCCEEEecCCcccccccccccCCCCCCCccccccCCCCCeEEEEee
Q 012687 396 GDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFR 456 (458)
Q Consensus 396 r~~~~~d~~~~V~LesGDLLIM~GeSR~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFR 456 (458)
++..+.+....|.|++|||+||+|++|+.||+|+++..++.+.. ..++.|||||||
T Consensus 139 ~~~~~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~~-----~~~~~RislTfR 194 (194)
T PF13532_consen 139 RNKSDDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPSH-----YVRGRRISLTFR 194 (194)
T ss_dssp EECGGTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEEST-----EE-S-EEEEEEE
T ss_pred eeccCCCccEEEEcCCCCEEEeChHHhhheeEcccccCCccccc-----cCCCCEEEEEeC
Confidence 98776777899999999999999999999999999876543322 257899999999
No 3
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=100.00 E-value=7.3e-35 Score=269.98 Aligned_cols=161 Identities=32% Similarity=0.499 Sum_probs=135.6
Q ss_pred ECCCCCHHHHHHHHHHHHHhcCCCCCCcCCccCCCceeee--------EEEEeccccCCCCCcccCcccCCCCCCCCCcH
Q 012687 243 LKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRL--------RMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPS 314 (458)
Q Consensus 243 lpnFLS~eEQ~~Li~~l~e~~l~p~~~~qP~~~~G~klkl--------R~v~lGy~wd~dt~~Ys~~~p~dg~p~ppiP~ 314 (458)
+++|+..++|..|+++|++...+ .+|+++...+|+++.. ||.+.|++|+|..+.|.. +.+||+||+
T Consensus 1 l~~~~~~~~~~~l~~~~~~~~~~-~~w~~~~~~~gk~~~~pr~~~~~l~W~~~g~~Y~ys~~~~~~-----~~~~p~~P~ 74 (169)
T TIGR00568 1 LKRYFAFNAQEQLIRDINDVASQ-DPFRQYVTPGGYTMSVAMTNLGKLGWTTHGQGYLYSPKDPQT-----NKPWPAMPQ 74 (169)
T ss_pred CCCccChHHHHHHHHHHHHHhhc-CCCcCeEecCCeEeeehhhhcccceEEcCCCcccCCCcccCC-----CCCCCCCCH
Confidence 46899999999999999988543 7899986668887653 566567777777666632 357899999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecCCceeee
Q 012687 315 EFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFL 394 (458)
Q Consensus 315 ~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~ 394 (458)
+|.+|++++++.+ +++.+.||+||||+|++|++||||+|+.| ++++.||||||||++|+|+
T Consensus 75 ~L~~L~~~v~~~~---------------g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e----~~~~~pI~SvSLG~~r~F~ 135 (169)
T TIGR00568 75 DLGDLCERVATAA---------------GFPDFQPDACLVNRYAPGATLSLHQDRDE----PDLRAPLLSVSLGLPAIFL 135 (169)
T ss_pred HHHHHHHHHHHHh---------------CCCCCCCCEEEEEeecCCCcccccccccc----ccCCCCEEEEeCCCCEEEE
Confidence 9999999875432 34567999999999999999999999654 5678999999999999999
Q ss_pred eecccCCCccEEEEcCCCCEEEecCCcccccccc
Q 012687 395 YGDERDANKAEKVLLESGDVLIFGGESRHVFHGV 428 (458)
Q Consensus 395 fr~~~~~d~~~~V~LesGDLLIM~GeSR~~wHgV 428 (458)
|+++++++.+.+|.|+|||||||+|++|++||||
T Consensus 136 ~~~~~~~~~~~~l~L~sGsllvM~G~sR~~~Hgv 169 (169)
T TIGR00568 136 IGGLKRNDPPKRLRLHSGDVVIMGGESRLAFHGV 169 (169)
T ss_pred ecCCcCCCceEEEEeCCCCEEEECCchhccccCC
Confidence 9998777778999999999999999999999997
No 4
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.1e-30 Score=246.96 Aligned_cols=182 Identities=27% Similarity=0.425 Sum_probs=147.5
Q ss_pred cccCCceEEECCCCCHHHHHHHHHHHHHhcCCCCCCcCCccC-CCceeeeEEEEeccccCCCCCcccCcccCCCCCCCCC
Q 012687 234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYN-DGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVI 312 (458)
Q Consensus 234 ~~l~PGLvLlpnFLS~eEQ~~Li~~l~e~~l~p~~~~qP~~~-~G~klklR~v~lGy~wd~dt~~Ys~~~p~dg~p~ppi 312 (458)
..+.||++++++|+ -.+|.++++.+... +...+|.++.+. +|+.+...+ .+||.+|...|.|+...|.++.+||++
T Consensus 11 ~~~~~G~~~~~~~~-~~~~~~l~~~l~~~-~~~~P~~~~~~~~~g~~~sV~r-~~~W~~d~~gy~y~~~~p~~~~p~p~l 87 (194)
T COG3145 11 RQLAPGAVILPGFL-LLTQGALVAALLFL-LSQAPWFRPRRTPYGKPMSVPR-LLGWVTDRRGYRYSLRSPLTGKPWPPL 87 (194)
T ss_pred ccCCCCeEEEeccc-ccchHHHHHHHHHh-cccCcccceeecCCCcEeeeee-ccceecccccccccccccCCCCCCCcc
Confidence 47789999999999 67777777777766 334688777665 899999876 677777744477888888888888888
Q ss_pred cHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecCCcee
Q 012687 313 PSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAE 392 (458)
Q Consensus 313 P~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssav 392 (458)
|..+..++..+ +++.+.|||||||+|++|++||||+|++|.. ...||||||||++|+
T Consensus 88 ~~~~~~~~~~~-------------------g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~----~~~~v~slSLg~~~~ 144 (194)
T COG3145 88 LALFHDLFGAA-------------------GYPFEGPEAVLVNRYRPGASIGWHQDKDEED----DRPPVASLSLGAPCI 144 (194)
T ss_pred HHHHHHHHHHh-------------------cCCCCChhheeEEeccCCCcccccccccccc----CCCceEEEecCCCeE
Confidence 88877766521 5678899999999999999999999999863 236899999999999
Q ss_pred eeeecccCCCccEEEEcCCCCEEEecCCcccccc-cccccCCCCCCCccccccCCCCCeEEE
Q 012687 393 FLYGDERDANKAEKVLLESGDVLIFGGESRHVFH-GVSSINPNSAPGALLENTMLRPGRLNL 453 (458)
Q Consensus 393 F~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~wH-gVp~I~p~t~P~~L~~~~~~r~~RINL 453 (458)
|+|++.++.+...++.|+|||||||+|++|+.|| .+|+ +.+ ....||||
T Consensus 145 F~~~~~~r~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~----~~~--------~~~~Rinl 194 (194)
T COG3145 145 FRLRGRRRRGPGLRLRLEHGDVVVMGGPSRLAWHHIIPK----TSR--------LTGQRINL 194 (194)
T ss_pred EEeccccCCCCceeEEecCCCEEEecCCccccccccccc----ccc--------CCcccccC
Confidence 9999988778889999999999999999999995 4444 443 23478885
No 5
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.9e-17 Score=155.21 Aligned_cols=180 Identities=21% Similarity=0.302 Sum_probs=128.2
Q ss_pred cccCCceEEECCCCCHHHHHHHHHHHHHhcCCCC-CCcCCccCCCceee-eEEEEeccccCCCCCcccCcccCCCCCCCC
Q 012687 234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPG-GFYQPGYNDGAKLR-LRMMCLGLDWDPQTRKYGKKRQVDGCEPSV 311 (458)
Q Consensus 234 ~~l~PGLvLlpnFLS~eEQ~~Li~~l~e~~l~p~-~~~qP~~~~G~klk-lR~v~lGy~wd~dt~~Ys~~~p~dg~p~pp 311 (458)
+-..|-+.||||||++|||..+++.+... |. .|. .+. +|.++|| ++.--.|.-+..
T Consensus 8 V~~~pt~~YIPnfIt~EEe~~~lshIe~a---p~pkW~--------~L~NRRLqNyG-----------Gvvh~~glipee 65 (224)
T KOG3200|consen 8 VKSAPTMIYIPNFITEEEENLYLSHIENA---PQPKWR--------VLANRRLQNYG-----------GVVHKTGLIPEE 65 (224)
T ss_pred ecccceEEEcCCccChHHHHHHHHHHhcC---CCchhH--------HHHhhhhhhcC-----------CccccCCcCccc
Confidence 34578999999999999999999988765 22 231 222 4666655 222123556788
Q ss_pred CcHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcE-EEeecCCc
Q 012687 312 IPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPV-VSFSVGDS 390 (458)
Q Consensus 312 iP~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PI-vSLSLGss 390 (458)
+|+||+.++.++... +.+++ ..|.+|||.|.+|++|.+|.|-.. + .|| ..||||+.
T Consensus 66 lP~wLq~~v~kinnl---------------glF~s-~~NHVLVNeY~pgqGImPHtDGPa------f-~piVstiSlGsh 122 (224)
T KOG3200|consen 66 LPPWLQYYVDKINNL---------------GLFKS-PANHVLVNEYLPGQGIMPHTDGPA------F-HPIVSTISLGSH 122 (224)
T ss_pred cCHHHHHHHHHhhcc---------------cccCC-CcceeEeecccCCCCcCcCCCCCc------c-cceEEEEecCCc
Confidence 999999999886422 13444 899999999999999999999974 3 455 78999999
Q ss_pred eeeeeecccC---C------C----ccEEEEcCCCCEEEecCCccccc-ccccccCCCCCC----Ccc------ccccCC
Q 012687 391 AEFLYGDERD---A------N----KAEKVLLESGDVLIFGGESRHVF-HGVSSINPNSAP----GAL------LENTML 446 (458)
Q Consensus 391 avF~fr~~~~---~------d----~~~~V~LesGDLLIM~GeSR~~w-HgVp~I~p~t~P----~~L------~~~~~~ 446 (458)
+++.|-...+ . + ....+.|++.++||+.+++=..| |||..-..+... ..+ ......
T Consensus 123 ~vldf~~p~r~e~~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lv 202 (224)
T KOG3200|consen 123 TVLDFYDPVRQEVNDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLV 202 (224)
T ss_pred eEEecccccccccCCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceee
Confidence 9999964211 1 1 14579999999999999997777 999863222100 000 011236
Q ss_pred CCCeEEEEeecC
Q 012687 447 RPGRLNLTFRQY 458 (458)
Q Consensus 447 r~~RINLTFRqv 458 (458)
++.|||||.|.|
T Consensus 203 r~tRvSLTiR~V 214 (224)
T KOG3200|consen 203 RQTRVSLTIRLV 214 (224)
T ss_pred ecceeEEEEecc
Confidence 799999999975
No 6
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.8e-17 Score=167.78 Aligned_cols=173 Identities=24% Similarity=0.392 Sum_probs=122.8
Q ss_pred cccCCc-eEEECCCCCHHHHHHHHHHHHHhcCCCCCCcCCccCCCceee-eEEEEeccccCCCCCcccCcccCCCCCCCC
Q 012687 234 GILRPG-MVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLR-LRMMCLGLDWDPQTRKYGKKRQVDGCEPSV 311 (458)
Q Consensus 234 ~~l~PG-LvLlpnFLS~eEQ~~Li~~l~e~~l~p~~~~qP~~~~G~klk-lR~v~lGy~wd~dt~~Ys~~~p~dg~p~pp 311 (458)
..+.|| +.++.+|+++.+++.++..+... .|.. . .+.+ +++.+||+.++|.++.-++. .+..|
T Consensus 123 ~~~~~~e~~~~~d~V~el~e~~l~~~~~~e-----~~~~----~-~~gk~R~~iq~G~~f~y~~~~~d~~-----~~~~p 187 (323)
T KOG4176|consen 123 EVFIPGELSLIVDFVTELEEKGLIGALVDE-----TFTY----Q-ESGKHREVIQLGYPFDYRTNNVDES-----KPVDP 187 (323)
T ss_pred cccChhhceehhhhhhhhHHhhhhcccccc-----ccee----e-ccccceeeeecCceeccCCCccccc-----CccCC
Confidence 455666 99999999998888887776543 2221 0 1233 44569999999887644322 12678
Q ss_pred CcHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecCCce
Q 012687 312 IPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSA 391 (458)
Q Consensus 312 iP~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssa 391 (458)
||..++.++++++.+. .+|. .||+|+||+|.+|++|.+|.|.+. |++||++|||-++|
T Consensus 188 iPs~~~~ii~rlv~~~---------------~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~------F~~Pi~slS~lSe~ 245 (323)
T KOG4176|consen 188 IPSLFKSIIDRLVSWR---------------VIPE-RPDQCTINFYEPGDGIPPHIDHSA------FLDPISSLSFLSEC 245 (323)
T ss_pred CchHHHHHHHHhhhhc---------------cCCC-CCCeeEEEeeCCCCCCCCCCChHH------hcCceEEEEeecce
Confidence 9999999999988762 3455 799999999999999999996653 67999999999999
Q ss_pred eeeeecccCCCc------cEEEEcCCCCEEEecCCcc-cccccccccCCCCCCCccccccCCCCCeEEEEeecC
Q 012687 392 EFLYGDERDANK------AEKVLLESGDVLIFGGESR-HVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY 458 (458)
Q Consensus 392 vF~fr~~~~~d~------~~~V~LesGDLLIM~GeSR-~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFRqv 458 (458)
+|.|++.-..+. ...+.|+-|++++|.|.+= .+-|.++. .++.||+||||++
T Consensus 246 ~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~---------------~~~kRisitfrki 304 (323)
T KOG4176|consen 246 TMEFGHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRP---------------SRNKRISITFRKI 304 (323)
T ss_pred eEEecccccccCccccccccccccccCeEEEeCCCcccccccccCC---------------CCCceEEEEEEEe
Confidence 999998642221 2344555555555555432 22243333 4788999999975
No 7
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=99.67 E-value=2.7e-17 Score=166.94 Aligned_cols=202 Identities=42% Similarity=0.689 Sum_probs=167.5
Q ss_pred CCCCCCcCCCCCeeEE--Eeccccc----chhhhhhc----cccCCCccccccCCceEEECCCCCHHHHHHHHHHHHHhc
Q 012687 194 WDSSHRLHNVEPFDIC--LSRRRNF----RMEKENEC----RQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELG 263 (458)
Q Consensus 194 ~~~~~~~~~~~pfdi~--~~k~~p~----~~~~~~~~----~~~~~~~~~~~l~PGLvLlpnFLS~eEQ~~Li~~l~e~~ 263 (458)
|....+..+-.++++| +.++.+. ++...+++ +...+| .++|| +|+||+++..|..+...|++++
T Consensus 167 w~T~G~~~dw~s~~~~~~~s~k~~~~~~~ll~~~~~~~~~a~~~~~~----~~~~G--li~nYlsi~~tl~ih~d~reld 240 (378)
T KOG2731|consen 167 WVTLGNQYDWSSKDIFIFLSKKHYNIKPSLLGLLREKVKAAKGFSHI----VIRPG--LIKNYLSIDDTLGIHLDCRELD 240 (378)
T ss_pred ccccccccCCccccccccccccCCCCChHHhhhhhhhhhhhcCccce----eccCc--ceeeecccCcEEEEEeehhhcc
Confidence 4434444444466644 7777643 34444433 223344 77999 9999999999999999999998
Q ss_pred CCCCCCcCCccCCCceeeeEEEEeccccCCCCCcccCcccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012687 264 KGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDI 343 (458)
Q Consensus 264 l~p~~~~qP~~~~G~klklR~v~lGy~wd~dt~~Ys~~~p~dg~p~ppiP~~L~~Lverii~~A~~l~~~~s~~~~~~~~ 343 (458)
+.+. |++|.+..+..+.+-|+|+|-.|+..+.+|..+.+++| +..|+..++.+++.+.+..++...++++
T Consensus 241 ~~~p-f~s~s~g~~ai~lLg~m~l~e~p~p~~lrsGdv~im~G---------fsrlv~haIp~s~sl~~~e~~~~~~~~e 310 (378)
T KOG2731|consen 241 LSKP-FYSPSLGQGAILLLGMMCLGENPDPMTLRSGDVVIMDG---------FSRLVEHAIPESRSLPARESNGTKAGDE 310 (378)
T ss_pred cCCc-cccccccccceeeecccccCCCCCccccccCceEeecc---------hHHHHhhccchhceecccccCCCccccc
Confidence 8764 99999999999999999999999999999988887776 7889999999888898888888889888
Q ss_pred CCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCccc
Q 012687 344 LPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRH 423 (458)
Q Consensus 344 ~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~ 423 (458)
.| .||.|+||+|.+-.+|+.|+|..|...++..+-||+++|.|+ +.|.++..++.++ |.+|.
T Consensus 311 ~p--lp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~d~~~---------------~~sr~ 372 (378)
T KOG2731|consen 311 AP--LPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQRDEDK---------------GRSRM 372 (378)
T ss_pred CC--CcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCc-cccccCchhhhhh---------------hhhee
Confidence 87 899999999999999999999999877888899999999999 9999998776664 88898
Q ss_pred cccccc
Q 012687 424 VFHGVS 429 (458)
Q Consensus 424 ~wHgVp 429 (458)
.||||.
T Consensus 373 ~f~~~~ 378 (378)
T KOG2731|consen 373 VFHGVR 378 (378)
T ss_pred cccCCC
Confidence 899873
No 8
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=99.55 E-value=2.4e-15 Score=152.92 Aligned_cols=134 Identities=25% Similarity=0.301 Sum_probs=106.2
Q ss_pred eeeEEEEeccccCCCCCcccCcccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhccccccccccCCCC-CCCEEEEeeeC
Q 012687 280 LRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPAL-SPDICIVNFYN 358 (458)
Q Consensus 280 lklR~v~lGy~wd~dt~~Ys~~~p~dg~p~ppiP~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~-~pnacLVN~Y~ 358 (458)
-|+||+++|++|+|.+..|-. +...+..-+|++|..+.+.-++.|.. +..+ .+..+|+|||.
T Consensus 163 ~KlRw~T~G~~~dw~s~~~~~---~~s~k~~~~~~~ll~~~~~~~~~a~~--------------~~~~~~~~Gli~nYls 225 (378)
T KOG2731|consen 163 PKLRWVTLGNQYDWSSKDIFI---FLSKKHYNIKPSLLGLLREKVKAAKG--------------FSHIVIRPGLIKNYLS 225 (378)
T ss_pred hhhcccccccccCCccccccc---cccccCCCCChHHhhhhhhhhhhhcC--------------ccceeccCcceeeecc
Confidence 368999999999999987421 12244566888888877654444311 2222 34447999999
Q ss_pred CCCCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCccccccccc--ccCCC
Q 012687 359 TSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVS--SINPN 434 (458)
Q Consensus 359 ~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~wHgVp--~I~p~ 434 (458)
+++.++.|.|..|. +-..|+++.|||+.|+|+++....++.+..+.|++||+++|.|.+|..+|+|| +..++
T Consensus 226 i~~tl~ih~d~rel----d~~~pf~s~s~g~~ai~lLg~m~l~e~p~p~~lrsGdv~im~Gfsrlv~haIp~s~sl~~ 299 (378)
T KOG2731|consen 226 IDDTLGIHLDCREL----DLSKPFYSPSLGQGAILLLGMMCLGENPDPMTLRSGDVVIMDGFSRLVEHAIPESRSLPA 299 (378)
T ss_pred cCcEEEEEeehhhc----ccCCccccccccccceeeecccccCCCCCccccccCceEeecchHHHHhhccchhceecc
Confidence 99999999999875 45678999999999999999988888899999999999999999999999999 44444
No 9
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=98.85 E-value=3.1e-09 Score=104.18 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=110.8
Q ss_pred cccCCceEEECCCCCHHHHHHHHHHHHHhcCCCCCCcCCccCCCceeeeEEEEeccccCCCCCcccCcccCCCCCCCCCc
Q 012687 234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIP 313 (458)
Q Consensus 234 ~~l~PGLvLlpnFLS~eEQ~~Li~~l~e~~l~p~~~~qP~~~~G~klklR~v~lGy~wd~dt~~Ys~~~p~dg~p~ppiP 313 (458)
....||+.++.+|||.+|+++|++.+... +|.+- ..| +|.+.||-.-+...++... ...-.||
T Consensus 68 ~~p~pG~~lie~Fls~~Eea~l~~~~D~~-----pW~~S--QSG----RRKQdyGPKvNFkk~Klkt------~~F~G~P 130 (306)
T KOG3959|consen 68 SIPIPGLTLIENFLSESEEAKLLNMIDTV-----PWAQS--QSG----RRKQDYGPKVNFKKKKLKT------DTFVGMP 130 (306)
T ss_pred ccccCCeeehhhhhccchHhHHHHHhccC-----chhhh--ccc----ccccccCCccchhhhhhcc------CcccCCc
Confidence 47789999999999999999999998765 56332 112 4556666333333332211 1245688
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCC-CCCccccccCccccccccCCCcEEEeecCCc--
Q 012687 314 SEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNT-SGRLGLHQDRDESRYSLKKGLPVVSFSVGDS-- 390 (458)
Q Consensus 314 ~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~-Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGss-- 390 (458)
..-..+.+++... ++..++ .++++|=+-|=+. |+.|-+|+|+.=- -+.-+|++..-.+
T Consensus 131 ~~~~~v~rrm~~y------------p~l~gf--qp~EqCnLeYep~kgsaIdpH~DD~Wi-----WGeRlv~~n~l~d~v 191 (306)
T KOG3959|consen 131 EYADMVLRRMSEY------------PVLKGF--QPFEQCNLEYEPVKGSAIDPHQDDMWI-----WGERLVRSNRLFDFV 191 (306)
T ss_pred hHHHHHHHHhhcc------------chhhcc--CcHHHcCcccccccCCccCccccchhh-----hhhheeehhhccHHH
Confidence 8877777775321 111122 2578887755444 6899999998621 1333444331111
Q ss_pred -----------eeeeeecc-------------------cCCCccEEEEcCCCCEEEecCCccccc-ccccccCCCCCCCc
Q 012687 391 -----------AEFLYGDE-------------------RDANKAEKVLLESGDVLIFGGESRHVF-HGVSSINPNSAPGA 439 (458)
Q Consensus 391 -----------avF~fr~~-------------------~~~d~~~~V~LesGDLLIM~GeSR~~w-HgVp~I~p~t~P~~ 439 (458)
..+.+-.. -.......|+++++|||||.|++|+.| |+|.+..
T Consensus 192 l~lc~~e~~~sg~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~h------- 264 (306)
T KOG3959|consen 192 LKLCSKECLASGIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRHH------- 264 (306)
T ss_pred HHhhhhhhhccceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHHh-------
Confidence 11211110 012235679999999999999999999 9999952
Q ss_pred cccccCCCCCeEEEEeec
Q 012687 440 LLENTMLRPGRLNLTFRQ 457 (458)
Q Consensus 440 L~~~~~~r~~RINLTFRq 457 (458)
.+++||.+|||.
T Consensus 265 ------i~~RRvcvt~RE 276 (306)
T KOG3959|consen 265 ------IRGRRVCVTMRE 276 (306)
T ss_pred ------hhhceeeeeHHh
Confidence 589999999995
No 10
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=97.56 E-value=0.0072 Score=55.37 Aligned_cols=90 Identities=27% Similarity=0.343 Sum_probs=57.7
Q ss_pred CCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeec-------CCceeeeeecccCCCccEEEEcCCCCEEEecC
Q 012687 347 LSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSV-------GDSAEFLYGDERDANKAEKVLLESGDVLIFGG 419 (458)
Q Consensus 347 ~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSL-------GssavF~fr~~~~~d~~~~V~LesGDLLIM~G 419 (458)
...+.+.|..|.+|+...+|.|..... . .+.-++++-+ |..-.|. ... ......|..+.|++|++..
T Consensus 80 ~~~~~~~~~~Y~~g~~~~~H~D~~~~~--~-~~~r~~T~~~yLn~~~~GG~~~f~--~~~-~~~~~~v~P~~G~~v~f~~ 153 (178)
T smart00702 80 LSAEDAQVARYGPGGHYGPHVDNFEDD--E-NGDRIATFLLYLNDVEEGGELVFP--GLG-LMVCATVKPKKGDLLFFPS 153 (178)
T ss_pred ccCcceEEEEECCCCcccCcCCCCCCC--C-CCCeEEEEEEEeccCCcCceEEec--CCC-CccceEEeCCCCcEEEEeC
Confidence 456888999999999999999987431 0 0123443332 2222221 111 1224589999999999986
Q ss_pred CcccccccccccCCCCCCCccccccCCCCCeEEEEee
Q 012687 420 ESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFR 456 (458)
Q Consensus 420 eSR~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFR 456 (458)
.-...+|++.++ ..+.|+++|..
T Consensus 154 ~~~~~~H~v~pv--------------~~G~r~~~~~W 176 (178)
T smart00702 154 GRGRSLHGVCPV--------------TRGSRWAITGW 176 (178)
T ss_pred CCCCccccCCcc--------------eeCCEEEEEEE
Confidence 543556998886 24679988864
No 11
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.09 E-value=0.021 Score=56.23 Aligned_cols=85 Identities=21% Similarity=0.325 Sum_probs=51.9
Q ss_pred EEEEeeeCCCCCccccccCccccccccCC---CcEEEee--cCCcee-----eeeecccCCCccEEEEcCCCCEEEecCC
Q 012687 351 ICIVNFYNTSGRLGLHQDRDESRYSLKKG---LPVVSFS--VGDSAE-----FLYGDERDANKAEKVLLESGDVLIFGGE 420 (458)
Q Consensus 351 acLVN~Y~~Gd~IG~H~D~ee~~~sL~~~---~PIvSLS--LGssav-----F~fr~~~~~d~~~~V~LesGDLLIM~Ge 420 (458)
-..+|.|.+|+.-++|+|..-.. .-+.. ...+|+. |-.+-. ..|.. ......|.++.||++|+...
T Consensus 81 ~~~f~rY~~G~~y~~H~D~~~~~-~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~---~~g~~~Vkp~aG~~vlfps~ 156 (226)
T PRK05467 81 PPLFNRYEGGMSYGFHVDNAVRS-LPGTGGRVRTDLSATLFLSDPDDYDGGELVIED---TYGEHRVKLPAGDLVLYPST 156 (226)
T ss_pred cceEEEECCCCccCccccCCccc-CCCCCcceeEEEEEEEEeCCCCCCcCCceEEec---CCCcEEEecCCCeEEEECCC
Confidence 45799999999999999997421 00001 0122222 322111 11111 11246899999999999974
Q ss_pred cccccccccccCCCCCCCccccccCCCCCeEEEEee
Q 012687 421 SRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFR 456 (458)
Q Consensus 421 SR~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFR 456 (458)
.+|.|.+| .++.|+.+++.
T Consensus 157 ---~lH~v~pV--------------t~G~R~~~~~W 175 (226)
T PRK05467 157 ---SLHRVTPV--------------TRGVRVASFFW 175 (226)
T ss_pred ---Cceeeeec--------------cCccEEEEEec
Confidence 45888775 35778888874
No 12
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.01 E-value=0.00089 Score=55.41 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=46.2
Q ss_pred CCEEEEeeeC---CCCCccccccCccccccccCCCcEEEeec-CCceeeeeecccCCCccEEEEcCCCCEEEecCC----
Q 012687 349 PDICIVNFYN---TSGRLGLHQDRDESRYSLKKGLPVVSFSV-GDSAEFLYGDERDANKAEKVLLESGDVLIFGGE---- 420 (458)
Q Consensus 349 pnacLVN~Y~---~Gd~IG~H~D~ee~~~sL~~~~PIvSLSL-GssavF~fr~~~~~d~~~~V~LesGDLLIM~Ge---- 420 (458)
++.+.+|+|. .+.++++|.|.+. .+++|-+ ....-+.|.... ....+...++.++|+-|.
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~~---------~~~Til~~~~~~gL~~~~~~---~~~~v~~~~~~~~v~~G~~l~~ 68 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDED---------GLLTILFQDEVGGLQVRDDG---EWVDVPPPPGGFIVNFGDALEI 68 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----------SSEEEEEETSTS-EEEEETT---EEEE----TTCEEEEEBHHHHH
T ss_pred CCEEEEEECCCcccCCceeCCCcCCC---------CeEEEEecccchheeccccc---cccCccCccceeeeeceeeeec
Confidence 3789999999 6789999999841 2333333 255666666532 344556666666666666
Q ss_pred ----cccc-cccccccCCCCCCCccccccCCCCCeEEEEeec
Q 012687 421 ----SRHV-FHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457 (458)
Q Consensus 421 ----SR~~-wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFRq 457 (458)
.+.. +|+|... ....|+|+||+.
T Consensus 69 ~t~g~~~~~~HrV~~~--------------~~~~R~s~~~f~ 96 (98)
T PF03171_consen 69 LTNGRYPATLHRVVPP--------------TEGERYSLTFFL 96 (98)
T ss_dssp HTTTSS----EEEE----------------STS-EEEEEEEE
T ss_pred ccCCccCCceeeeEcC--------------CCCCEEEEEEEE
Confidence 4444 4888773 257899999973
No 13
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=96.47 E-value=0.003 Score=52.34 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=52.4
Q ss_pred EEEeeeCCCCCccccccCccccccccCCCcE--EEeecC-Cc-----eeeeeeccc-CCCccEEEE-----cCCCCEEEe
Q 012687 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPV--VSFSVG-DS-----AEFLYGDER-DANKAEKVL-----LESGDVLIF 417 (458)
Q Consensus 352 cLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PI--vSLSLG-ss-----avF~fr~~~-~~d~~~~V~-----LesGDLLIM 417 (458)
|-||.|.+|+.++||.|.... ..-+ +.|-|. .. ..+.|-... .......+. .+.|++++|
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~------~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F 74 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYD------PHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIF 74 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCC------CSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEE
T ss_pred CEEEEECcCCEEeeeECCCCC------CcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEE
Confidence 458999999999999999421 0122 222243 11 345554322 223334555 999999999
Q ss_pred cCCcccccccccccCCCCCCCccccccCCCCCeEEEEee
Q 012687 418 GGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFR 456 (458)
Q Consensus 418 ~GeSR~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFR 456 (458)
.+ ...||+|.++ . ....|++||+-
T Consensus 75 ~~--~~~~H~v~~v--~-----------~~~~R~~l~~~ 98 (100)
T PF13640_consen 75 PS--DNSLHGVTPV--G-----------EGGRRYSLTFW 98 (100)
T ss_dssp ES--CTCEEEEEEE--------------EESEEEEEEEE
T ss_pred eC--CCCeecCccc--C-----------CCCCEEEEEEE
Confidence 99 6668999996 1 36789999873
No 14
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=96.41 E-value=0.012 Score=58.77 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=46.9
Q ss_pred CCCCCCCEEEEeeeCC----------------C-CCccccccCccccccccCCCcEEEeecCC----ceeeeeecc--cC
Q 012687 344 LPALSPDICIVNFYNT----------------S-GRLGLHQDRDESRYSLKKGLPVVSFSVGD----SAEFLYGDE--RD 400 (458)
Q Consensus 344 ~p~~~pnacLVN~Y~~----------------G-d~IG~H~D~ee~~~sL~~~~PIvSLSLGs----savF~fr~~--~~ 400 (458)
.....||.+|||+++| | -.++||.|..- ....+|+--|--+ +....++-+ .-
T Consensus 133 ~~~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL-----~~~StVAVY~~s~~~~~~~~W~VgLka~D~ 207 (253)
T PF12933_consen 133 VGSCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENL-----VERSTVAVYSYSCEEPEPADWHVGLKAWDI 207 (253)
T ss_dssp -------EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB------TT--EEEEEEE-----TTSEEEEEETT--
T ss_pred ccceeeehhhhhccCcccccccccccccccCCcceeeeecccccc-----ccccceEEEEecCCCCCCCceEEEEeecCC
Confidence 3445799999999998 1 24789999764 4467886555433 334444322 12
Q ss_pred CCccEEEEcCCCCEEEecCCccccc-ccccccCCCCCCCccccccCCCCCeEEEEeec
Q 012687 401 ANKAEKVLLESGDVLIFGGESRHVF-HGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457 (458)
Q Consensus 401 ~d~~~~V~LesGDLLIM~GeSR~~w-HgVp~I~p~t~P~~L~~~~~~r~~RINLTFRq 457 (458)
..+...|+|++||++.|-+..-..- |+|=. + ..+|+|=|-|.
T Consensus 208 ~tP~L~vPL~sgd~Y~Mldd~N~tHqH~Vla---G------------~~~RfSSTHRV 250 (253)
T PF12933_consen 208 ETPGLAVPLRSGDCYYMLDDFNATHQHCVLA---G------------SSARFSSTHRV 250 (253)
T ss_dssp SS-EEEEEE-TT-EEEE-TTHHHHEEEEEE-----------------SS-EEEEEEE-
T ss_pred CCCeeEEeccCCCeEEEccccchhhHHHHhc---C------------CCcccccccee
Confidence 3346899999999999999986532 44433 3 35699988874
No 15
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=94.80 E-value=1.6 Score=44.18 Aligned_cols=26 Identities=8% Similarity=-0.104 Sum_probs=22.6
Q ss_pred cCCceEEECCCCCHHHHHHHHHHHHH
Q 012687 236 LRPGMVLLKHYLTIREQILIVRICQE 261 (458)
Q Consensus 236 l~PGLvLlpnFLS~eEQ~~Li~~l~e 261 (458)
...|.++++++|++++-++|.+.+..
T Consensus 12 ~e~Gyv~~~~~~s~eei~~L~~~~~~ 37 (288)
T TIGR01762 12 EKNGFIGPFTLYSPEEMKETWKRIRL 37 (288)
T ss_pred HhCCEEeCcCCCCHHHHHHHHHHHHH
Confidence 35699999999999999999888864
No 16
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=89.86 E-value=1.7 Score=41.59 Aligned_cols=76 Identities=29% Similarity=0.402 Sum_probs=49.5
Q ss_pred EEEEeeeCCCCCccccccCccccccccCCCcE-EEeecCCc------eeeeeecc--cCCCccEEEEcCCCCEEEecCCc
Q 012687 351 ICIVNFYNTSGRLGLHQDRDESRYSLKKGLPV-VSFSVGDS------AEFLYGDE--RDANKAEKVLLESGDVLIFGGES 421 (458)
Q Consensus 351 acLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PI-vSLSLGss------avF~fr~~--~~~d~~~~V~LesGDLLIM~GeS 421 (458)
..|+..|.+||-...|+|-.-. +.| |+ +.|-|-.+ .+|.+--. +-...+.-+.|+-||.+||.-.-
T Consensus 63 tplllrY~~gdyn~LHqdlyGe---~vF--PlQvv~lLs~Pg~DftGGEFVltEQrPR~QSR~~V~~L~qGda~if~t~~ 137 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGE---HVF--PLQVVILLSEPGEDFTGGEFVLTEQRPRMQSRAMVLPLRQGDALIFATNH 137 (173)
T ss_pred chhhheeCCCCccccccCCCCC---ccc--CeEEEEEcCCCCCcccCceEEEEEecCCccCccccCCcCCCCEEEEecCC
Confidence 4678899999999999998742 444 55 44434222 24555322 22234567999999999997543
Q ss_pred ----------cccc-cccccc
Q 012687 422 ----------RHVF-HGVSSI 431 (458)
Q Consensus 422 ----------R~~w-HgVp~I 431 (458)
|... |||.++
T Consensus 138 RPv~G~rG~yRv~~RHgVS~v 158 (173)
T PF09859_consen 138 RPVRGARGYYRVNMRHGVSRV 158 (173)
T ss_pred CCcCCCccceecccccccccc
Confidence 3333 888886
No 17
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=86.62 E-value=8.6 Score=36.25 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred CCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecC--CceeeeeecccCCCccEEEEcCCCCEEEecCCcccc
Q 012687 347 LSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVG--DSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHV 424 (458)
Q Consensus 347 ~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLG--ssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~ 424 (458)
..|....|+ ..-....|.|...... +. +.++.+-.| ....|.+-.....-.-..|.+++||||++-|..=.
T Consensus 74 ~pFs~~sv~---~nr~t~~HrD~~~~~~--~~-~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~~~~~- 146 (171)
T PF12851_consen 74 RPFSGVSVI---SNRCTHSHRDTHNMPN--GY-DVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCAKREL- 146 (171)
T ss_pred cceeceEEE---eecCccceecCCCCCC--Ce-EEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEccccee-
Confidence 345555555 2347789999975421 11 223333333 23444443311111346899999999999986544
Q ss_pred cccccccCCCCCCCccccccCCCCCeEEEEee
Q 012687 425 FHGVSSINPNSAPGALLENTMLRPGRLNLTFR 456 (458)
Q Consensus 425 wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFR 456 (458)
||+.++.... ...+.||+|.|=
T Consensus 147 -Hgvtpv~~~~---------~~~~~R~slvfy 168 (171)
T PF12851_consen 147 -HGVTPVESPN---------RNHGTRISLVFY 168 (171)
T ss_pred -eecCcccCCC---------CCCCeEEEEEEE
Confidence 9999985311 135789999873
No 18
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=78.69 E-value=1.9 Score=36.45 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=37.2
Q ss_pred EEEeeeCCCCCccccccCccccccccCCCcEEEeecCCce-eeeeecc----------------cCCCccEEEEcCCCCE
Q 012687 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSA-EFLYGDE----------------RDANKAEKVLLESGDV 414 (458)
Q Consensus 352 cLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssa-vF~fr~~----------------~~~d~~~~V~LesGDL 414 (458)
|=+|.|+.|+...+|.-.... -..|.=|.+.... .+.|-.. ........+..+.|+|
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s~------~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~l 75 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNSW------LSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDL 75 (101)
T ss_dssp EEEEEE-TT--EEEE--TT-S------EEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEE
T ss_pred eeEEEeCCCCccCceECCCcC------EEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEE
Confidence 346888888888888765421 1234333333221 1222111 0112256789999999
Q ss_pred EEecCCcccccccccccCCCCCCCccccccCCCCCeEEEEe
Q 012687 415 LIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTF 455 (458)
Q Consensus 415 LIM~GeSR~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTF 455 (458)
|||.+-. +|+|.+-. ....||+|.|
T Consensus 76 vlFPs~l---~H~v~p~~-------------~~~~Risisf 100 (101)
T PF13759_consen 76 VLFPSWL---WHGVPPNN-------------SDEERISISF 100 (101)
T ss_dssp EEEETTS---EEEE-----------------SSS-EEEEEE
T ss_pred EEeCCCC---EEeccCcC-------------CCCCEEEEEc
Confidence 9999733 37777631 2467999987
No 19
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=76.77 E-value=34 Score=33.26 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecC-Ccee
Q 012687 314 SEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVG-DSAE 392 (458)
Q Consensus 314 ~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLG-ssav 392 (458)
+.+.+|.+.+.+.+.++++.-. ....-..+....+=+|.+.+|+..+.|.--..- | ..|.=|+.- ....
T Consensus 64 p~f~~L~~~l~~~v~~~~~~l~----~d~~~~~l~i~~~W~ni~~~Gg~h~~H~Hp~~~---l---SgvyYl~~p~~~g~ 133 (201)
T TIGR02466 64 PEFAELVQQLDKHVAKFARDLE----GDNDGLELRIQKAWVNILPQGGTHSPHLHPGSV---I---SGTYYVQTPENCGA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC----CCccccceEEeeEeEEEcCCCCccCceECCCce---E---EEEEEEeCCCCCCc
Confidence 5566666666544444432100 000111345677889999999999999866531 0 223222221 1122
Q ss_pred eeeecccC----------------CCccEEEEcCCCCEEEecCCcccccccccccCCCCCCCccccccCCCCCeEEEEe
Q 012687 393 FLYGDERD----------------ANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTF 455 (458)
Q Consensus 393 F~fr~~~~----------------~d~~~~V~LesGDLLIM~GeSR~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTF 455 (458)
+.|..... ......+..+.|+||||.+-.+ |+|.+-. ....||||.|
T Consensus 134 ~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~---H~v~p~~-------------~~~~RISiSF 196 (201)
T TIGR02466 134 IKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLR---HEVPPNE-------------SEEERISVSF 196 (201)
T ss_pred eeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCc---eecCCCC-------------CCCCEEEEEE
Confidence 33322110 1112356779999999988444 6777631 2467999988
No 20
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=74.47 E-value=8.8 Score=37.80 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=45.3
Q ss_pred EEeeeCCCCCccccccCccccccccCCCcEEEeecCCceeeeeecccCCC----------ccEEEEcCCCCEEEecCCcc
Q 012687 353 IVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDAN----------KAEKVLLESGDVLIFGGESR 422 (458)
Q Consensus 353 LVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d----------~~~~V~LesGDLLIM~GeSR 422 (458)
+-|.|..|+..++|+|..-. +|..+.-- .|+---+|+..+...++-+ .-..|.|+.||+++..+++-
T Consensus 85 ~Fn~Y~eg~~f~fHvDgavr--~~hp~~~~-~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPAGdLVlypStSl 161 (229)
T COG3128 85 LFNRYQEGDFFGFHVDGAVR--SIHPGSGF-RLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPAGDLVLYPSTSL 161 (229)
T ss_pred hhhhccCCCcccccccCccc--ccCCCCCc-eeEeeeeeeeecCCccccCCceEEEeccccceEEeccCCCEEEcccccc
Confidence 67999999999999998754 22222211 3333333444443332211 13579999999999999875
Q ss_pred ccccccccc
Q 012687 423 HVFHGVSSI 431 (458)
Q Consensus 423 ~~wHgVp~I 431 (458)
+ .|.++
T Consensus 162 H---~VtPV 167 (229)
T COG3128 162 H---EVTPV 167 (229)
T ss_pred e---ecccc
Confidence 4 45553
No 21
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=60.61 E-value=35 Score=35.40 Aligned_cols=162 Identities=16% Similarity=0.165 Sum_probs=82.9
Q ss_pred cccCCceEEECCCCCHHHHHHHHHHHHHhcCCCCCCcCCccC--CCce-e-eeEEEEeccccCCCCCcccCcccCCCCCC
Q 012687 234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYN--DGAK-L-RLRMMCLGLDWDPQTRKYGKKRQVDGCEP 309 (458)
Q Consensus 234 ~~l~PGLvLlpnFLS~eEQ~~Li~~l~e~~l~p~~~~qP~~~--~G~k-l-klR~v~lGy~wd~dt~~Ys~~~p~dg~p~ 309 (458)
....|-+++|+||||++|.+.|++...... .+. ..+. .|+. . ..|... | .|. +.
T Consensus 50 lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l-~~S----~v~~~~~g~~~~s~~RTS~-~-~~l------------~~--- 107 (310)
T PLN00052 50 VSWQPRIFVYKGFLSDAECDHLVKLAKKKI-QRS----MVADNKSGKSVMSEVRTSS-G-MFL------------DK--- 107 (310)
T ss_pred ecCCCCEEEECCcCCHHHHHHHHHhccccc-ccc----eeecCCCCccccCCCEEec-c-eee------------cC---
Confidence 445799999999999999999998775431 110 0000 1111 1 123210 0 010 00
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccc-cccCCCcEEEee--
Q 012687 310 SVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRY-SLKKGLPVVSFS-- 386 (458)
Q Consensus 310 ppiP~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~-sL~~~~PIvSLS-- 386 (458)
.--+.+..|.+|+.... ++|...-+..-|-.|.+|+.-.+|.|-..... ....+.-+++|-
T Consensus 108 -~~dpvv~~I~~Ria~~t---------------~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~Y 171 (310)
T PLN00052 108 -RQDPVVSRIEERIAAWT---------------FLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMY 171 (310)
T ss_pred -CCCHHHHHHHHHHHHHh---------------CCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEE
Confidence 00123455656654331 23333446677777999999999999543100 000122344433
Q ss_pred -----cCCceeeeeeccc---C--------CCccEEEEcCCCCEEEecCCc------ccccccccccCC
Q 012687 387 -----VGDSAEFLYGDER---D--------ANKAEKVLLESGDVLIFGGES------RHVFHGVSSINP 433 (458)
Q Consensus 387 -----LGssavF~fr~~~---~--------~d~~~~V~LesGDLLIM~GeS------R~~wHgVp~I~p 433 (458)
-|...+|-.-... . .....+|.-+.|+.|++.--- ...+|+.-+|..
T Consensus 172 Lndv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~ 240 (310)
T PLN00052 172 LSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIE 240 (310)
T ss_pred eccCCCCCceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeec
Confidence 2444555432100 0 011367889999999976521 223476666543
No 22
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=58.91 E-value=63 Score=32.26 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.8
Q ss_pred cCCceEEECCCCCHHHHHHHHHHHHHh
Q 012687 236 LRPGMVLLKHYLTIREQILIVRICQEL 262 (458)
Q Consensus 236 l~PGLvLlpnFLS~eEQ~~Li~~l~e~ 262 (458)
-.-|.++++++|++++-++|-+.+...
T Consensus 26 ~~dGyvvl~~vls~eev~~lr~~i~~~ 52 (277)
T TIGR02408 26 ERDGFLLLENLFSDDEVAALLAEVERM 52 (277)
T ss_pred HHCCEEECcccCCHHHHHHHHHHHHHH
Confidence 356999999999999999999888776
No 23
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=57.24 E-value=1.1e+02 Score=31.65 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=58.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHh----hhhccccc-----cccccCCCCCCCEEEEeeeCCC------CCccccccC
Q 012687 305 DGCEPSVIPSEFKQLVQRSMSEAHAL----IKMDSKVS-----NVEDILPALSPDICIVNFYNTS------GRLGLHQDR 369 (458)
Q Consensus 305 dg~p~ppiP~~L~~Lverii~~A~~l----~~~~s~~~-----~~~~~~p~~~pnacLVN~Y~~G------d~IG~H~D~ 369 (458)
+...||..|+.+.++++...+...++ .+.-+... .....+....--..-+|+|++- -|++.|+|.
T Consensus 122 ~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~~~~~~~~r~n~Yp~cp~pe~~lGl~~HtD~ 201 (322)
T KOG0143|consen 122 DPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFGETGGQVMRLNYYPPCPEPELTLGLGAHTDK 201 (322)
T ss_pred CcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCCccceEEEEeecCCCcCccccccccCccCc
Confidence 34568888888888776443333222 11111111 0111111111226689999982 489999998
Q ss_pred ccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCccc
Q 012687 370 DESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRH 423 (458)
Q Consensus 370 ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~ 423 (458)
.-- .| -+.=....-.++.. .++..++|..-+|.++|.-|.+-.
T Consensus 202 ~~l--------Ti-Llqd~~V~GLQv~~--~dg~Wi~V~P~p~a~vVNiGD~l~ 244 (322)
T KOG0143|consen 202 SFL--------TI-LLQDDDVGGLQVFT--KDGKWIDVPPIPGAFVVNIGDMLQ 244 (322)
T ss_pred Cce--------EE-EEccCCcCceEEEe--cCCeEEECCCCCCCEEEEcccHHh
Confidence 621 11 11111223334443 245688888888999999888743
No 24
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=54.46 E-value=25 Score=35.99 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=36.4
Q ss_pred CEEEEeeeCC-C--CCccccccCccccccccCCCcEEEeecCCceeeeeeccc----------------CCCccEEEEcC
Q 012687 350 DICIVNFYNT-S--GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDER----------------DANKAEKVLLE 410 (458)
Q Consensus 350 nacLVN~Y~~-G--d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~----------------~~d~~~~V~Le 410 (458)
-.|-+|.|-. + .++++|.|+.. |+.|=+-.....++.... ..+....+.|+
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~d----------vfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 181 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDHD----------VFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLE 181 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SSE----------EEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-
T ss_pred cccceEEEecCCCCCCccCEECCcc----------cEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEEC
Confidence 5689999954 3 49999999864 344555555666665410 01235689999
Q ss_pred CCCEEEecCCc
Q 012687 411 SGDVLIFGGES 421 (458)
Q Consensus 411 sGDLLIM~GeS 421 (458)
+||+|.|.-..
T Consensus 182 pGD~LYlPrG~ 192 (319)
T PF08007_consen 182 PGDVLYLPRGW 192 (319)
T ss_dssp TT-EEEE-TT-
T ss_pred CCCEEEECCCc
Confidence 99999998643
No 25
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=52.80 E-value=88 Score=31.35 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=36.9
Q ss_pred EEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCccc
Q 012687 351 ICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRH 423 (458)
Q Consensus 351 acLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~ 423 (458)
.+-+|+|++- -+++.|.|..-- .|+ +- ....=+++.. ++..+.|.-.+|.++|.-|++-.
T Consensus 117 ~lrl~~YP~~~~~~~~~g~~~HtD~g~l--------TlL-~q-d~v~GLqV~~---~g~Wi~V~p~p~a~vVNiGD~l~ 182 (262)
T PLN03001 117 NITVSYYPPCPQPELTLGLQSHSDFGAI--------TLL-IQ-DDVEGLQLLK---DAEWLMVPPISDAILIIIADQTE 182 (262)
T ss_pred hheeecCCCCCCcccccCCcCCcCCCee--------EEE-Ee-CCCCceEEee---CCeEEECCCCCCcEEEEccHHHH
Confidence 3579999872 468899997531 111 01 1111233332 34577888899999999998743
No 26
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=52.46 E-value=35 Score=35.36 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=37.4
Q ss_pred CEEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCc
Q 012687 350 DICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGES 421 (458)
Q Consensus 350 nacLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeS 421 (458)
..+-+|+|++- -++++|.|-.-- +|-+.+. .|. +++... .++....|...+|.++|--|++
T Consensus 193 ~~lR~~~YPp~~~~~~~~g~~~HtD~g~l--TlL~qd~-----v~G---LQV~~~-~~g~Wi~V~p~pg~~vVNiGD~ 259 (345)
T PLN02750 193 SFARFNHYPPCPAPHLALGVGRHKDGGAL--TVLAQDD-----VGG---LQISRR-SDGEWIPVKPIPDAFIINIGNC 259 (345)
T ss_pred eEEEEEecCCCCCcccccCcCCCCCCCeE--EEEecCC-----CCc---eEEeec-CCCeEEEccCCCCeEEEEhHHH
Confidence 45678999872 378999997531 1111111 111 333221 2345788999999999998887
No 27
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=50.53 E-value=72 Score=33.42 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=37.8
Q ss_pred CEEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCc
Q 012687 350 DICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGES 421 (458)
Q Consensus 350 nacLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeS 421 (458)
..+-+|+|++- -+++.|.|..-- .|-+.+. .| =+++... .++..+.|...+|.++|.-|++
T Consensus 195 ~~lrl~~YP~~~~~~~~~G~~~HTD~g~l--TlL~Qd~-----v~---GLQV~~~-~~~~Wi~Vpp~pgalVVNiGD~ 261 (358)
T PLN02515 195 QKVVVNYYPKCPQPDLTLGLKRHTDPGTI--TLLLQDQ-----VG---GLQATRD-GGKTWITVQPVEGAFVVNLGDH 261 (358)
T ss_pred ceEEEeecCCCCChhhccCCCCCCCCCeE--EEEecCC-----CC---ceEEEEC-CCCeEEECCCCCCeEEEEccHH
Confidence 45789999872 378999998631 1111111 11 1333221 2235788888999999998886
No 28
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=49.99 E-value=1.2e+02 Score=31.34 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=38.4
Q ss_pred CCEEEEeeeCCC------CCccccccCccccccccCCCcEEEe--ecCCceeeeeecccCCCccEEEEcCCCCEEEecCC
Q 012687 349 PDICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSF--SVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGE 420 (458)
Q Consensus 349 pnacLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSL--SLGssavF~fr~~~~~d~~~~V~LesGDLLIM~Ge 420 (458)
...+-+|+|++- -+++.|.|..-- .|+-= ..| =+++.. ++....|.-.+|.++|--|.
T Consensus 189 ~~~lrl~~YP~~~~~~~~~g~~~HTD~g~l--------TlL~qd~~v~---GLQV~~---~g~Wi~V~p~pg~lVVNiGD 254 (337)
T PLN02639 189 GQHMAVNYYPPCPEPELTYGLPAHTDPNAL--------TILLQDQQVA---GLQVLK---DGKWVAVNPHPGAFVINIGD 254 (337)
T ss_pred ccEEEEEcCCCCCCcccccCCCCCcCCCce--------EEEEecCCcC---ceEeec---CCeEEeccCCCCeEEEechh
Confidence 346778999883 368899998631 12111 011 133332 34578889999999999998
Q ss_pred cc
Q 012687 421 SR 422 (458)
Q Consensus 421 SR 422 (458)
+-
T Consensus 255 ~L 256 (337)
T PLN02639 255 QL 256 (337)
T ss_pred HH
Confidence 73
No 29
>PLN02216 protein SRG1
Probab=47.86 E-value=1.3e+02 Score=31.49 Aligned_cols=60 Identities=13% Similarity=0.085 Sum_probs=35.5
Q ss_pred CEEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCc
Q 012687 350 DICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGES 421 (458)
Q Consensus 350 nacLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeS 421 (458)
..+-+|+|.+- -+++.|.|-.-- .|+--. ....=+++.+ ++....|.-.+|.++|.-|.+
T Consensus 210 ~~lRl~~YPp~p~~~~~~G~~~HtD~g~l--------TlL~q~-~~v~GLQV~~---~g~Wi~V~p~pgalvVNiGD~ 275 (357)
T PLN02216 210 QSIRMNYYPPCPQPDQVIGLTPHSDAVGL--------TILLQV-NEVEGLQIKK---DGKWVSVKPLPNALVVNVGDI 275 (357)
T ss_pred heeEEeecCCCCCcccccCccCcccCceE--------EEEEec-CCCCceeEEE---CCEEEECCCCCCeEEEEcchh
Confidence 46779999872 378899997521 121110 0111133332 345777777888888887776
No 30
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=46.47 E-value=67 Score=31.44 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=50.2
Q ss_pred cCCCCCCCEEEEeeeCC---CCCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecC
Q 012687 343 ILPALSPDICIVNFYNT---SGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGG 419 (458)
Q Consensus 343 ~~p~~~pnacLVN~Y~~---Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~G 419 (458)
-+|++.||+.+|.--.+ |+....|.|+... ...-++.+.+.....+..++. .+.+++||++++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~r~~~-----~~~~~i~~~~~G~~~~~~~~~-------~~~~~~g~~i~i~p 81 (290)
T PRK10572 14 LLPGYSFNAHLVAGLTPIEAGGYLDFFIDRPLG-----MKGYILNLTIRGQGVIFNGGR-------AFVCRPGDLLLFPP 81 (290)
T ss_pred CCCCCCcceeeeecccccccCCccceeeecCCC-----ccceEEEEEEeccEEEecCCe-------eEecCCCCEEEECC
Confidence 46789999888765544 6777888886542 344566777766677765442 58899999999998
Q ss_pred Cccccc
Q 012687 420 ESRHVF 425 (458)
Q Consensus 420 eSR~~w 425 (458)
..-+.+
T Consensus 82 ~~~h~~ 87 (290)
T PRK10572 82 GEIHHY 87 (290)
T ss_pred CCceee
Confidence 876543
No 31
>PLN02904 oxidoreductase
Probab=44.62 E-value=1.9e+02 Score=30.34 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=38.8
Q ss_pred CEEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCc
Q 012687 350 DICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGES 421 (458)
Q Consensus 350 nacLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeS 421 (458)
...-+|+|++- -+++.|.|-.-- .|+.= ...=+++.. +++..+.|...+|.++|.-|.+
T Consensus 208 ~~lrl~~YPp~p~~~~~~g~~~HtD~g~l--------TlL~q---d~~GLQV~~--~~g~Wi~V~p~pgalVVNiGD~ 272 (357)
T PLN02904 208 QVMAVNCYPACPEPEIALGMPPHSDFGSL--------TILLQ---SSQGLQIMD--CNKNWVCVPYIEGALIVQLGDQ 272 (357)
T ss_pred cEEEeeecCCCCCcccccCCcCccCCCce--------EEEec---CCCeeeEEe--CCCCEEECCCCCCeEEEEccHH
Confidence 35679999872 478899998631 12111 112244433 2345889999999999999987
No 32
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=40.21 E-value=1.1e+02 Score=32.19 Aligned_cols=61 Identities=16% Similarity=0.100 Sum_probs=36.6
Q ss_pred EEEEeeeCCC------CCccccccCccccccccCCCcEEEeecC-CceeeeeecccCCCccEEEEcCCCCEEEecCCccc
Q 012687 351 ICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVG-DSAEFLYGDERDANKAEKVLLESGDVLIFGGESRH 423 (458)
Q Consensus 351 acLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLG-ssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~ 423 (458)
.+-+|+|.+- -+++.|.|-.-- .|+ +.=+ ...=+++.. ++....|.-.+|.++|.-|++-.
T Consensus 212 ~lR~~~YP~~~~~~~~~g~~~HtD~g~l--------TlL-~qd~~~v~GLQV~~---~g~Wi~V~p~pgalVVNiGD~L~ 279 (361)
T PLN02758 212 AVRMNYYPPCSRPDLVLGLSPHSDGSAL--------TVL-QQGKGSCVGLQILK---DNTWVPVHPVPNALVINIGDTLE 279 (361)
T ss_pred eeeeecCCCCCCcccccCccCccCCcee--------EEE-EeCCCCCCCeeeee---CCEEEeCCCCCCeEEEEccchhh
Confidence 4458999862 368899998531 111 1100 001244432 24578888899999999998733
No 33
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=39.60 E-value=1.4e+02 Score=31.13 Aligned_cols=61 Identities=15% Similarity=0.046 Sum_probs=37.8
Q ss_pred CCEEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCcc
Q 012687 349 PDICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESR 422 (458)
Q Consensus 349 pnacLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR 422 (458)
...+-+|+|.+- -+++.|.|-.-- .|-+.+. .|. +++.+ ++....|...+|.++|--|.+-
T Consensus 196 ~~~lrl~~YPp~~~~~~~~G~~~HtD~g~l--TlL~Qd~-----v~G---LQV~~---~g~Wi~V~p~pgalvVNiGD~L 262 (348)
T PLN02912 196 GQHMAINYYPPCPQPELTYGLPGHKDANLI--TVLLQDE-----VSG---LQVFK---DGKWIAVNPIPNTFIVNLGDQM 262 (348)
T ss_pred cceeeeeecCCCCChhhcCCcCCCcCCCce--EEEEECC-----CCc---eEEEE---CCcEEECCCcCCeEEEEcCHHH
Confidence 346788999982 368899998631 1111111 121 33322 3457888889999999988873
No 34
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=38.80 E-value=2.4e+02 Score=29.34 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=37.7
Q ss_pred CEEEEeeeCCC--------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCc
Q 012687 350 DICIVNFYNTS--------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGES 421 (458)
Q Consensus 350 nacLVN~Y~~G--------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeS 421 (458)
..+-+|+|.+- -+++.|.|-.-- .|-+.+ ..|. +++.. .++....|.-.+|.++|--|++
T Consensus 178 ~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~l--TlL~Qd-----~v~G---LQV~~--~~g~Wi~Vpp~pga~VVNiGD~ 245 (335)
T PLN02156 178 SCLRMNHYPEKEETPEKVEIGFGEHTDPQLI--SLLRSN-----DTAG---LQICV--KDGTWVDVPPDHSSFFVLVGDT 245 (335)
T ss_pred ceEeEEeCCCCCCCccccccCCCCccCCCce--EEEEeC-----CCCc---eEEEe--CCCCEEEccCCCCcEEEEhHHH
Confidence 46778999772 257889997521 111111 1121 33322 2345888999999999999987
Q ss_pred cc
Q 012687 422 RH 423 (458)
Q Consensus 422 R~ 423 (458)
-.
T Consensus 246 l~ 247 (335)
T PLN02156 246 LQ 247 (335)
T ss_pred HH
Confidence 33
No 35
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.97 E-value=1.4e+02 Score=29.61 Aligned_cols=79 Identities=28% Similarity=0.393 Sum_probs=48.4
Q ss_pred CCCEEEEeeeCCCCCccccccCccccccccCCCcE-EEeecCCc------eeeeeeccc--CCCccEEEEcCCCCEEEec
Q 012687 348 SPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPV-VSFSVGDS------AEFLYGDER--DANKAEKVLLESGDVLIFG 418 (458)
Q Consensus 348 ~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PI-vSLSLGss------avF~fr~~~--~~d~~~~V~LesGDLLIM~ 418 (458)
.|.. |+=-|-+||--..|+|--- +|.| |+ |.|-|-.+ .+|.+-... -...+..|.|+.||-+||.
T Consensus 123 RpTp-LlLqYgpgD~NcLHQDLYG---elvF--PLQvailLsePg~DfTGGEF~lvEQRPR~QSr~~vvpLrqG~g~vFa 196 (236)
T COG3826 123 RPTP-LLLQYGPGDYNCLHQDLYG---ELVF--PLQVAILLSEPGTDFTGGEFVLVEQRPRMQSRPTVVPLRQGDGVVFA 196 (236)
T ss_pred cCCc-eeEEecCCccchhhhhhhh---ceee--eeeEEEeccCCCCcccCceEEEEecccccccCCceeeccCCceEEEE
Confidence 4444 5556899999999999753 3555 44 44444332 245443221 1233567999999999996
Q ss_pred C----------Cccccc-ccccccC
Q 012687 419 G----------ESRHVF-HGVSSIN 432 (458)
Q Consensus 419 G----------eSR~~w-HgVp~I~ 432 (458)
- ..|... |||.++.
T Consensus 197 vr~RPv~gtrG~~r~~lRHGvS~lR 221 (236)
T COG3826 197 VRDRPVQGTRGWYRVPLRHGVSRLR 221 (236)
T ss_pred eecCcccCccCccccchhcchhhhh
Confidence 3 333333 7777763
No 36
>PLN02485 oxidoreductase
Probab=36.29 E-value=3.5e+02 Score=27.75 Aligned_cols=61 Identities=13% Similarity=-0.006 Sum_probs=37.4
Q ss_pred EEEEeeeCCC----------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCC
Q 012687 351 ICIVNFYNTS----------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGE 420 (458)
Q Consensus 351 acLVN~Y~~G----------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~Ge 420 (458)
.+-+|+|.+. -++++|.|-.-- .|+ +.-+...=+++.. .++..+.|...+|.++|--|+
T Consensus 185 ~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~l--------TlL-~qd~~~~GLqV~~--~~g~Wi~V~p~pg~~vVNiGD 253 (329)
T PLN02485 185 VMRIIGYPGVSNLNGPPENDIGCGAHTDYGLL--------TLV-NQDDDITALQVRN--LSGEWIWAIPIPGTFVCNIGD 253 (329)
T ss_pred eEEEEeCCCCccccCCcccCcccccccCCCeE--------EEE-eccCCCCeeeEEc--CCCcEEECCCCCCcEEEEhHH
Confidence 5788999873 268899997531 111 0101112244433 234578888899999999888
Q ss_pred cc
Q 012687 421 SR 422 (458)
Q Consensus 421 SR 422 (458)
+-
T Consensus 254 ~L 255 (329)
T PLN02485 254 ML 255 (329)
T ss_pred HH
Confidence 73
No 37
>PLN02947 oxidoreductase
Probab=35.94 E-value=2.4e+02 Score=29.82 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=34.9
Q ss_pred CEEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCc
Q 012687 350 DICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGES 421 (458)
Q Consensus 350 nacLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeS 421 (458)
..+-+|+|++. -+++.|.|-.-- +|-+.+.+ .=+++.. ++..+.|...+|.++|--|.+
T Consensus 225 ~~lrln~YPp~p~~~~~~G~~~HTD~g~l--TlL~Qd~v--------~GLQV~~---~g~Wi~V~p~pga~VVNvGD~ 289 (374)
T PLN02947 225 QMMVVNCYPACPEPELTLGMPPHSDYGFL--TLLLQDEV--------EGLQIMH---AGRWVTVEPIPGSFVVNVGDH 289 (374)
T ss_pred eeeeeecCCCCCCcccccCCCCccCCCce--EEEEecCC--------CCeeEeE---CCEEEeCCCCCCeEEEEeCce
Confidence 46789999983 378899997531 11111111 1233332 344677777777777777775
No 38
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=35.44 E-value=1.8e+02 Score=30.28 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=37.9
Q ss_pred CCEEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCcc
Q 012687 349 PDICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESR 422 (458)
Q Consensus 349 pnacLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR 422 (458)
....-+|+|++. -+++.|.|..-- .|-+.+.+ | =+++.. ++....|.-.+|.++|.-|++-
T Consensus 199 ~~~lRl~~YPp~~~~~~~~g~~aHTD~g~l--TlL~Qd~v-----~---GLQV~~---~g~Wv~V~p~pgalVVNiGD~L 265 (341)
T PLN02984 199 TGVIRVYRYPQCSNEAEAPGMEVHTDSSVI--SILNQDEV-----G---GLEVMK---DGEWFNVKPIANTLVVNLGDMM 265 (341)
T ss_pred cceEEEEeCCCCCCcccccCccCccCCCce--EEEEeCCC-----C---CeeEee---CCceEECCCCCCeEEEECChhh
Confidence 346789999883 378899998631 11111111 1 123321 3457888888899999988873
No 39
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=35.38 E-value=1.3e+02 Score=30.49 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=38.9
Q ss_pred CCEEEEeeeCC-----C-CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCcc
Q 012687 349 PDICIVNFYNT-----S-GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESR 422 (458)
Q Consensus 349 pnacLVN~Y~~-----G-d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR 422 (458)
...+-+|+|.+ + -+++.|.|-.-- .|+ +.=+...=+++... .++..+.|...+|.++|.-|++-
T Consensus 148 ~~~lr~~~YP~~p~~~~~~g~~~HtD~g~l--------TlL-~qd~~~~GLqV~~~-~~g~Wi~V~p~pga~vVNiGD~l 217 (300)
T PLN02365 148 PSQFRINKYNFTPETVGSSGVQIHTDSGFL--------TIL-QDDENVGGLEVMDP-SSGEFVPVDPLPGTLLVNLGDVA 217 (300)
T ss_pred ccceeeeecCCCCCccccccccCccCCCce--------EEE-ecCCCcCceEEEEC-CCCeEEecCCCCCeEEEEhhHHH
Confidence 35667999955 2 478899997521 111 11111112444331 13457889999999999999873
Q ss_pred c
Q 012687 423 H 423 (458)
Q Consensus 423 ~ 423 (458)
.
T Consensus 218 ~ 218 (300)
T PLN02365 218 T 218 (300)
T ss_pred H
Confidence 3
No 40
>PLN02704 flavonol synthase
Probab=34.78 E-value=89 Score=32.23 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=35.7
Q ss_pred EEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCc
Q 012687 351 ICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGES 421 (458)
Q Consensus 351 acLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeS 421 (458)
.+-+|+|.+. -+++.|.|..-- .|-+.+. .| =+++.. ++....|...+|.++|.-|++
T Consensus 200 ~lrl~~YP~~~~~~~~~g~~~HtD~g~l--TlL~qd~-----v~---GLQV~~---~g~Wi~V~p~pg~lvVNvGD~ 263 (335)
T PLN02704 200 LLKINYYPPCPRPDLALGVVAHTDMSAI--TILVPNE-----VQ---GLQVFR---DDHWFDVKYIPNALVIHIGDQ 263 (335)
T ss_pred hhhhhcCCCCCCcccccCccCccCCcce--EEEecCC-----CC---ceeEeE---CCEEEeCCCCCCeEEEEechH
Confidence 3567999872 368899998631 1111111 11 123322 345788888999999999987
No 41
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=32.27 E-value=4.6e+02 Score=27.15 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=40.6
Q ss_pred cCCCCCCCEEEEeeeCCCCCccccccCcccc-----ccccCCCcEEEeecCCceeeeeecccCCCc------cE--EEEc
Q 012687 343 ILPALSPDICIVNFYNTSGRLGLHQDRDESR-----YSLKKGLPVVSFSVGDSAEFLYGDERDANK------AE--KVLL 409 (458)
Q Consensus 343 ~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~-----~sL~~~~PIvSLSLGssavF~fr~~~~~d~------~~--~V~L 409 (458)
+++-...+..-|=-|..|+.=.+|-|--..+ .....+..|++ ..|.+.....++. .. .|..
T Consensus 169 ~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT------~l~yls~v~~GG~TvFP~~~~~~~V~P 242 (289)
T KOG1591|consen 169 GLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIAT------VLMYLSDVEQGGETVFPNLGMKPAVKP 242 (289)
T ss_pred CCCcccCccceEEEecCCccccccccccccccchhhhhcccCCccee------EEEEecccCCCCcccCCCCCCcccccC
Confidence 3444466777888899999999998876210 00112233332 3455544332221 23 7889
Q ss_pred CCCCEEEe
Q 012687 410 ESGDVLIF 417 (458)
Q Consensus 410 esGDLLIM 417 (458)
+-||.|.+
T Consensus 243 kkGdal~w 250 (289)
T KOG1591|consen 243 KKGDALFW 250 (289)
T ss_pred CCCCeeEE
Confidence 99999886
No 42
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=31.41 E-value=65 Score=30.30 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=26.3
Q ss_pred cCCceeeeeecccCCCccEEEEcCCCCEEEecCCccccc
Q 012687 387 VGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVF 425 (458)
Q Consensus 387 LGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~w 425 (458)
+..++.|.++. .++....|.++.||++++.....++|
T Consensus 99 ~~G~g~Fdvr~--~~~~wiri~~e~GDli~vP~g~~HrF 135 (157)
T PF03079_consen 99 VDGSGYFDVRD--GDDVWIRILCEKGDLIVVPAGTYHRF 135 (157)
T ss_dssp EECEEEEEEE---TTCEEEEEEEETTCEEEE-TT--EEE
T ss_pred eCcEEEEEEEc--CCCEEEEEEEcCCCEEecCCCCceeE
Confidence 44569999985 34556779999999999999988765
No 43
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=30.61 E-value=38 Score=25.66 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=35.8
Q ss_pred eeCCCCCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCccccc
Q 012687 356 FYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVF 425 (458)
Q Consensus 356 ~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~w 425 (458)
.+.+|..+++|...... -..+=+-.+..+.+.+ ..+.|+.||.+++.....+.+
T Consensus 4 ~~~pG~~~~~h~H~~~~---------e~~~vl~G~~~~~~~~-------~~~~l~~Gd~~~i~~~~~H~~ 57 (71)
T PF07883_consen 4 TLPPGGSIPPHRHPGED---------EFFYVLSGEGTLTVDG-------ERVELKPGDAIYIPPGVPHQV 57 (71)
T ss_dssp EEETTEEEEEEEESSEE---------EEEEEEESEEEEEETT-------EEEEEETTEEEEEETTSEEEE
T ss_pred EECCCCCCCCEECCCCC---------EEEEEEECCEEEEEcc-------EEeEccCCEEEEECCCCeEEE
Confidence 46788899999965431 1222233345565443 279999999999999876644
No 44
>PTZ00273 oxidase reductase; Provisional
Probab=30.22 E-value=4.4e+02 Score=26.82 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=36.8
Q ss_pred CEEEEeeeCCC-------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCc
Q 012687 350 DICIVNFYNTS-------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGES 421 (458)
Q Consensus 350 nacLVN~Y~~G-------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeS 421 (458)
..+-+|+|.+. -++++|.|-.-- .|+.=. + ..=+++.. .++....|...+|.++|.-|++
T Consensus 177 ~~lrl~~YP~~~~~~~~~~g~~~HTD~g~l--------TlL~qd-~-~~GLqV~~--~~g~Wi~V~p~pg~lvVNvGD~ 243 (320)
T PTZ00273 177 SVFRMKHYPALPQTKKGRTVCGEHTDYGII--------TLLYQD-S-VGGLQVRN--LSGEWMDVPPLEGSFVVNIGDM 243 (320)
T ss_pred ceeeeeecCCCCCccccCcccccccCCCeE--------EEEecC-C-CCceEEEC--CCCCEEeCCCCCCeEEEEHHHH
Confidence 45678999873 268899998531 111100 0 01133332 2345788888999999998886
No 45
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=30.16 E-value=1.8e+02 Score=30.53 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=35.6
Q ss_pred EEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCc
Q 012687 351 ICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGES 421 (458)
Q Consensus 351 acLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeS 421 (458)
.+-+|+|.+- -+++.|.|-.-- .|+ +.=....-+++.. ++....|.-.+|.++|.-|.+
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g~l--------TlL-~q~~~v~GLQV~~---~g~W~~V~p~pgalVVNiGD~ 278 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPGGM--------TIL-LPDDNVAGLQVRR---DDAWITVKPVPDAFIVNIGDQ 278 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCceE--------EEE-eeCCCCCcceeeE---CCEEEECCCCCCeEEEEcchh
Confidence 4567999762 378999997531 111 1001111233332 345778888999999999987
No 46
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=28.40 E-value=2.6e+02 Score=29.39 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=37.6
Q ss_pred EEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCcc
Q 012687 351 ICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESR 422 (458)
Q Consensus 351 acLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR 422 (458)
.+=+|+|++- -+++.|.|-.-- .|+-=. ...=+++.. +++..+.|.-.+|.++|--|.+-
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g~l--------TiL~Qd--~v~GLQV~~--~~~~Wi~V~p~pgalVVNiGD~l 276 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSSLL--------TILYQS--NTSGLQVFR--EGVGWVTVPPVPGSLVVNVGDLL 276 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCCcE--------EEEecC--CCCCceEEC--CCCEEEEcccCCCCEEEEhHHHH
Confidence 4559999882 379999998631 121100 011133332 23358889999999999999873
No 47
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=26.75 E-value=4.4e+02 Score=26.98 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=31.7
Q ss_pred EEEeeeCCC------CCccccccCccccccccCCCcEEEeecCC--ceeeeeecccCCCccEEEEcCC-CCEEEecCCc
Q 012687 352 CIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGD--SAEFLYGDERDANKAEKVLLES-GDVLIFGGES 421 (458)
Q Consensus 352 cLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGs--savF~fr~~~~~d~~~~V~Les-GDLLIM~GeS 421 (458)
.-+|+|++- -+++.|.|..- ++|=+.. ..=+++. .++....|.-.+ |.++|--|.+
T Consensus 155 lrl~~YP~~~~~~~~~G~~~HtD~g~-----------lTlL~q~~~v~GLqV~---~~g~Wi~V~p~p~~~lvVNvGD~ 219 (303)
T PLN02403 155 TKVAKYPECPRPELVRGLREHTDAGG-----------IILLLQDDQVPGLEFL---KDGKWVPIPPSKNNTIFVNTGDQ 219 (303)
T ss_pred eeeEcCCCCCCcccccCccCccCCCe-----------EEEEEecCCCCceEec---cCCeEEECCCCCCCEEEEEehHH
Confidence 569999772 35789999763 1111111 1112332 134466777666 4677777776
No 48
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=25.84 E-value=65 Score=30.51 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=15.5
Q ss_pred ccEEEEcCCCCEEEecCCccc
Q 012687 403 KAEKVLLESGDVLIFGGESRH 423 (458)
Q Consensus 403 ~~~~V~LesGDLLIM~GeSR~ 423 (458)
....|-|-.--++.|++..|.
T Consensus 122 pI~SvSLG~~r~F~~~~~~~~ 142 (169)
T TIGR00568 122 PLLSVSLGLPAIFLIGGLKRN 142 (169)
T ss_pred CEEEEeCCCCEEEEecCCcCC
Confidence 356788888888888877654
No 49
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=25.83 E-value=1.9e+02 Score=25.12 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=39.7
Q ss_pred CCEEEEe-eeCCCCCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCccccc
Q 012687 349 PDICIVN-FYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVF 425 (458)
Q Consensus 349 pnacLVN-~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~w 425 (458)
++..+++ .+.+|+.++||.-... .+..+=|-....|.+.+. ...|..||++++.....+.+
T Consensus 41 ~~~~~~~v~~~~G~~~~~H~hp~~---------~~~~~Vl~G~~~~~~~g~-------~~~l~~Gd~i~ip~g~~H~~ 102 (131)
T COG1917 41 ENLSVVLVTFEPGAVIPWHTHPLG---------EQTIYVLEGEGTVQLEGE-------KKELKAGDVIIIPPGVVHGL 102 (131)
T ss_pred ceEEEEEEEECCCcccccccCCCc---------ceEEEEEecEEEEEecCC-------ceEecCCCEEEECCCCeeee
Confidence 3444434 4688999999997621 122222334466666532 58899999999999887644
No 50
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=24.61 E-value=4.9e+02 Score=27.15 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=36.3
Q ss_pred EEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCcc
Q 012687 351 ICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESR 422 (458)
Q Consensus 351 acLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR 422 (458)
..-+|+|.+- -+++.|.|-.-- .|+- .-+...=+++.+ ++..+.|.-.+|.++|.-|.+-
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g~l--------TlL~-qd~~v~GLQV~~---~g~Wi~V~p~pg~lVVNiGD~L 269 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGSAF--------TLLL-PDKDVEGLQFLK---DGKWYKAPIVPDTILINVGDQM 269 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCCce--------EEEE-ecCCCCceeEeE---CCeEEECCCCCCcEEEEcChHH
Confidence 3678999762 378899998631 1211 100011133322 3457888889999999988873
No 51
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=23.18 E-value=1.8e+02 Score=29.93 Aligned_cols=61 Identities=11% Similarity=-0.009 Sum_probs=36.3
Q ss_pred EEEEeeeCCC------CCccccccCccccccccCCCcEEEeecCCceeeeeecccCCCccEEEEcCCCCEEEecCCccc
Q 012687 351 ICIVNFYNTS------GRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRH 423 (458)
Q Consensus 351 acLVN~Y~~G------d~IG~H~D~ee~~~sL~~~~PIvSLSLGssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~ 423 (458)
.+-+|+|++- -+++.|.|..-- .|+-= =+...=+++.+ ++....|...+|.++|.-|++-.
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g~l--------TlL~q-d~~v~GLQV~~---~g~Wi~V~p~pg~lvVNiGD~l~ 225 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAGGI--------ILLFQ-DDKVSGLQLLK---DGEWVDVPPMRHSIVVNLGDQLE 225 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCCeE--------EEEEe-cCCCCCcCccc---CCeEEECCCCCCeEEEEeCHHHH
Confidence 4678999872 367899998631 11100 00001123321 34577888889999999998743
No 52
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=23.10 E-value=1.5e+02 Score=28.96 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=28.9
Q ss_pred CceeeeeecccCCCccEEEEcCCCCEEEecCCccccc
Q 012687 389 DSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVF 425 (458)
Q Consensus 389 ssavF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~w 425 (458)
....|.+.. .+++...|.++.|||++.....+++|
T Consensus 104 G~GiF~v~~--~d~~~~~i~c~~gDLI~vP~gi~HwF 138 (181)
T COG1791 104 GEGIFDVHS--PDGKVYQIRCEKGDLISVPPGIYHWF 138 (181)
T ss_pred cceEEEEEC--CCCcEEEEEEccCCEEecCCCceEEE
Confidence 448888876 34567899999999999999998875
Done!