BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012689
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/454 (29%), Positives = 228/454 (50%), Gaps = 41/454 (9%)
Query: 18 LKVTIHHSSLVFPSQETEKKSLFLSNIDQVL-NFSVETVHFFE--SHKDFPPHVVAEKLR 74
+K+ + S++V P+QET ++L+ SN+D V+ NF +V+F+ +F A+ L+
Sbjct: 3 MKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNF---FDAKVLK 59
Query: 75 NTLGKILVPYDFLAGRLKANAKTGKMEIDCNAAGAVFIVASSEYKLDDIGDLVYPNPGFK 134
+ L + LVP+ +AGRLK + + G++EI+CN G +F+ A S+ +DD GD P +
Sbjct: 60 DALSRALVPFYPMAGRLKRD-EDGRIEIECNGEGVLFVEAESDGVVDDFGDFA-PTLELR 117
Query: 135 QLIINSSFDDNLLEQDDKPLCIFQVTSFKCGGFSIGTSTNHATFDGLSFKVFLDNLAALA 194
+LI + + L + QVT FKCGG S+G H DG S F+++ + +A
Sbjct: 118 RLIPAVDYSQGI---SSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 174
Query: 195 ADKPLAIIPCNDRRLLAARSPPRVTFDH-----PEMLKLKMPFGEESNNAPIFDITQEDL 249
+ + P DR LL AR PP+ F H P LK+ P +S++ P +
Sbjct: 175 RGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVS-PQTAKSDSVP-------ET 226
Query: 250 DFKIFRLTPDDIANLKEKAKATVEYENSRYITGFNVVSALIWRCKALSYDHAKGKTPERE 309
IF+LT + I+ LK K+K E N+ + + +++ +WRC A+G ++
Sbjct: 227 AVSIFKLTREQISALKAKSK---EDGNTISYSSYEMLAGHVWRCAC----KARGLEVDQG 279
Query: 310 SRMLYAVDIRPRLNPPLPASYVGNAVLSAYANAKCEELKEKPFSRLVEMVSEGAKRMSDE 369
+++ A D R RL P LP Y GN + +A A +L+ KP + + RM ++
Sbjct: 280 TKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDND 339
Query: 370 YARSAIDWGET---YKGFPHG-------EFLVSSWWKLGFSKVEYPWGKPKYSCPVVYHK 419
Y RSA+D+ E K G ++SW +L ++ WG+P + P
Sbjct: 340 YLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAY 399
Query: 420 KDIILLFPNIDNDNGVNVLVSLPSKEMVEFESLF 453
+ + + P+ ND ++V +SL + M F+S
Sbjct: 400 EGLSFILPSPTNDGSMSVAISLQGEHMKLFQSFL 433
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 197 bits (502), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 135/454 (29%), Positives = 227/454 (50%), Gaps = 41/454 (9%)
Query: 18 LKVTIHHSSLVFPSQETEKKSLFLSNIDQVL-NFSVETVHFFE--SHKDFPPHVVAEKLR 74
+K+ + S++V P+QET ++L+ SN+D V+ NF +V+F+ +F A+ L+
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNF---FDAKVLK 62
Query: 75 NTLGKILVPYDFLAGRLKANAKTGKMEIDCNAAGAVFIVASSEYKLDDIGDLVYPNPGFK 134
+ L + LVP+ +AGRLK + + G++EI+CN G +F+ A S+ +DD GD P +
Sbjct: 63 DALSRALVPFYPMAGRLKRD-EDGRIEIECNGEGVLFVEAESDGVVDDFGDFA-PTLELR 120
Query: 135 QLIINSSFDDNLLEQDDKPLCIFQVTSFKCGGFSIGTSTNHATFDGLSFKVFLDNLAALA 194
+LI + + L + QVT FKCGG S+G H DG S F+++ + +A
Sbjct: 121 RLIPAVDYSQGI---SSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
Query: 195 ADKPLAIIPCNDRRLLAARSPPRVTFDH-----PEMLKLKMPFGEESNNAPIFDITQEDL 249
+ + P DR LL AR PP+ F H P L + P S++ P +
Sbjct: 178 RGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVS-PQTAASDSVP-------ET 229
Query: 250 DFKIFRLTPDDIANLKEKAKATVEYENSRYITGFNVVSALIWRCKALSYDHAKGKTPERE 309
IF+LT + I+ LK K+K E N+ + + +++ +WRC A+G ++
Sbjct: 230 AVSIFKLTREQISALKAKSK---EDGNTISYSSYEMLAGHVWRCAC----KARGLEVDQG 282
Query: 310 SRMLYAVDIRPRLNPPLPASYVGNAVLSAYANAKCEELKEKPFSRLVEMVSEGAKRMSDE 369
+++ A D R RL P LP Y GN + +A A +L+ KP + + RM ++
Sbjct: 283 TKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDND 342
Query: 370 YARSAIDWGE-------TYKG---FPHGEFLVSSWWKLGFSKVEYPWGKPKYSCPVVYHK 419
Y RSA+D+ E +G F ++SW +L ++ WG+P + P
Sbjct: 343 YLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAY 402
Query: 420 KDIILLFPNIDNDNGVNVLVSLPSKEMVEFESLF 453
+ + + P+ ND ++V +SL + M F+S
Sbjct: 403 EGLSFILPSPTNDGSMSVAISLQGEHMKLFQSFL 436
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/454 (29%), Positives = 226/454 (49%), Gaps = 41/454 (9%)
Query: 18 LKVTIHHSSLVFPSQETEKKSLFLSNIDQVL-NFSVETVHFFE--SHKDFPPHVVAEKLR 74
+K+ + S++V P+QET ++L+ SN+D V+ NF +V+F+ +F A+ L+
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNF---FDAKVLK 62
Query: 75 NTLGKILVPYDFLAGRLKANAKTGKMEIDCNAAGAVFIVASSEYKLDDIGDLVYPNPGFK 134
+ L + LVP+ +AGRLK + + G++EI+CN G +F+ A S+ +DD GD P +
Sbjct: 63 DALSRALVPFYPMAGRLKRD-EDGRIEIECNGEGVLFVEAESDGVVDDFGDFA-PTLELR 120
Query: 135 QLIINSSFDDNLLEQDDKPLCIFQVTSFKCGGFSIGTSTNHATFDGLSFKVFLDNLAALA 194
+LI + + L + QVT FK GG S+G H DG S F+++ + +A
Sbjct: 121 RLIPAVDYSQGI---SSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
Query: 195 ADKPLAIIPCNDRRLLAARSPPRVTFDH-----PEMLKLKMPFGEESNNAPIFDITQEDL 249
+ + P DR LL AR PP+ F H P L + P S++ P +
Sbjct: 178 RGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVS-PQTAASDSVP-------ET 229
Query: 250 DFKIFRLTPDDIANLKEKAKATVEYENSRYITGFNVVSALIWRCKALSYDHAKGKTPERE 309
IF+LT + I+ LK K+K E N+ + + +++ +WRC A+G ++
Sbjct: 230 AVSIFKLTREQISALKAKSK---EDGNTISYSSYEMLAGHVWRCAC----KARGLEVDQG 282
Query: 310 SRMLYAVDIRPRLNPPLPASYVGNAVLSAYANAKCEELKEKPFSRLVEMVSEGAKRMSDE 369
+++ A D R RL P LP Y GN + +A A +L+ KP + + RM ++
Sbjct: 283 TKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDND 342
Query: 370 YARSAIDWGE-------TYKG---FPHGEFLVSSWWKLGFSKVEYPWGKPKYSCPVVYHK 419
Y RSA+D+ E +G F ++SW +L ++ WG+P + P
Sbjct: 343 YLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAY 402
Query: 420 KDIILLFPNIDNDNGVNVLVSLPSKEMVEFESLF 453
+ + + P+ ND ++V +SL + M F+S
Sbjct: 403 EGLSFILPSPTNDGSMSVAISLQGEHMKLFQSFL 436
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/453 (26%), Positives = 204/453 (45%), Gaps = 52/453 (11%)
Query: 15 PQDLKVTIHHSSLVFPSQETEK--KSLFLSNIDQVL-NFSVETVHFFESHKD--FPPHVV 69
PQ KV+ L+ PS T + K +S++DQ+L + + F+ + D P
Sbjct: 3 PQMEKVS---EELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQT 59
Query: 70 AEKLRNTLGKILVPYDFLAGRLKANAKTGKMEIDCNAAGAVFIVASSEYKLDDIGDLVYP 129
++ L+ +L K+L + LAGR+ N+ +DCN +G F+ A + +L V
Sbjct: 60 SQHLKQSLSKVLTHFYPLAGRINVNSS-----VDCNDSGVPFVEARVQAQLSQAIQNVVE 114
Query: 130 NPGFKQLIINSSFDDNLLE-QDDKPLCIFQVTSFKCGGFSIGTSTNHATFDGLSFKVFLD 188
Q + ++++ +E +D PL + +++ F+CGG +IG + +H D LS FL+
Sbjct: 115 LEKLDQYLPSAAYPGGKIEVNEDVPLAV-KISFFECGGTAIGVNLSHKIADVLSLATFLN 173
Query: 189 NLAALAADKPLAIIPCNDRRLLAARS-PPRVTFDHPEMLKLKMPFGEESNNAPIFDITQE 247
A + ++P D LAAR PP PE+ + E
Sbjct: 174 AWTATCRGETEIVLPNFD---LAARHFPPVDNTPSPEL------------------VPDE 212
Query: 248 DLDFKIFRLTPDDIANLKEKAKATVEYENSRYITGFNVVSALIWRCKALSYDHAKGKTPE 307
++ K F + I L+ +A + E +N + +V A IW+ + AK +
Sbjct: 213 NVVMKRFVFDKEKIGALRAQASSASEEKN---FSRVQLVVAYIWK-HVIDVTRAKYGA-K 267
Query: 308 RESRMLYAVDIRPRLNPPLPASYVGNAVLSAYANAKCEELKEKPFSRLVEMVSEGAKRMS 367
+ ++ AV++R R+NPPLP +GN +A E +K F L+ + ++
Sbjct: 268 NKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAE--WDKDFPDLIGPLRTSLEKTE 325
Query: 368 DEYARSAIDWGET--YKGFPHGEFLVSSWWKLGFSKVEYPWGKPKYSCPVVYHKKDIILL 425
D++ + G T Y+ P +SW +LGF +++ WGKP +C + K++ LL
Sbjct: 326 DDHNHELLK-GMTCLYELEPQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALL 384
Query: 426 FPNIDNDNGVNVLVSLPSKEM----VEFESLFN 454
D GV + + EM VE SL +
Sbjct: 385 MDTRSGD-GVEAWLPMAEDEMAMLPVELLSLVD 416
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 121/294 (41%), Gaps = 33/294 (11%)
Query: 153 PLCIFQVTSFKCGGFSIGTSTNHATFDGLSFKVFLDNLAAL----AADKPLA--IIPCND 206
P+ QVT F G SIG + +H DG + F+ A L ++ LA IP D
Sbjct: 143 PVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYD 202
Query: 207 RRLLAARSPPRVTFDHPEMLKLKMPFGEESNNAPIFDITQEDLDFKIFRLTPDDIANLKE 266
R ++ + P V K + S+ +T D F +T DI LK
Sbjct: 203 RSVI--KDPNGVGXSIWNEXKKYKHXXKXSDV-----VTPPDKVRGTFIITRHDIGKLKN 255
Query: 267 KAKATVEYENSRYITGFNVVSALIWRCKALSYDHAKGKTPERESRMLY--AVDIRPRLNP 324
++T F V A +W C + + A G+ + + A D R + NP
Sbjct: 256 LV--LTRRPKLTHVTSFTVTCAYVWTC-IIKSEAATGEEIDENGXEFFGCAADCRAQFNP 312
Query: 325 PLPASYVGNAVLSAYANAKCEELKEKP-FSRLVEMVSEGA-KRMSDEYARSAIDWGETYK 382
PLP SY GNA++ A + +L K F+ VE++ E KR DE + W + Y
Sbjct: 313 PLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSGSWFKEYD 372
Query: 383 GFPHGEFL-VSSWWKLGFSKVEYPWGKPKYSCPVVYHKKDIILLFPNIDNDNGV 435
L V+ KL ++ WG+P+ L F +IDND+G+
Sbjct: 373 KVDAKRSLSVAGSPKLDLYAADFGWGRPEK------------LEFVSIDNDDGI 414
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 156/393 (39%), Gaps = 38/393 (9%)
Query: 84 YDFLAGRLKANAKTGKMEIDCNAAGAVFIVASSEYKLDDIGDLVYPNP----GFKQLIIN 139
Y F+ + A T K EI C G V +E LD + +L +P F L+
Sbjct: 77 YPFVGKLVVYPAPTKKPEI-CYVEGDSVAVTFAECNLD-LNELTGNHPRNCDKFYDLVPI 134
Query: 140 SSFDDNLLEQDDKPLCIFQVTSFKCGGFSIGTSTNHATFDGLSFKVFLDNLAALAADKPL 199
L + PL QVT F G +IG + +H D + FL ++A
Sbjct: 135 LGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGN- 193
Query: 200 AIIPCNDRRLLAARSPP---RVT----FDHPEMLKLKM-PFGEESNNAPIFDITQEDLDF 251
ND LA + P R+ D + + K+ F E+ + D
Sbjct: 194 -----NDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSL--AGPSDKLR 246
Query: 252 KIFRLTPDDIANLKEKAKATVEYENSRYITGFNVVSALIWRCKALSYDHAKGKTPERESR 311
F LT I LK++ A + Y++ F V A IW C A S + ++
Sbjct: 247 ATFILTRAVINQLKDRVLA--QLPTLEYVSSFTVACAYIWSCIAKSRN-------DKLQL 297
Query: 312 MLYAVDIRPRLNPPLPASYVGNAVLSAYANAKCEELKEKP-FSRLVEMVSEGAKRMSDEY 370
+ +D R R+ PP+P +Y GN V A AK L K F +++ E + +Y
Sbjct: 298 FGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDY 357
Query: 371 ARSAI-DWGETY-----KGFPHGEFLVSSWWKLGFSKVEYPWGKPKYSCPVVYHKKDIIL 424
+ D E++ +G P VS KL F +++ WGKPK V I
Sbjct: 358 KDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAIS 417
Query: 425 LFPNIDNDNGVNVLVSLPSKEMVEFESLFNKFL 457
+ +++ + + V + + +M +F +F+ L
Sbjct: 418 INSCKESNEDLEIGVCISATQMEDFVHIFDDGL 450
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 135/346 (39%), Gaps = 38/346 (10%)
Query: 84 YDFLAGRLKANAKTGKMEIDCNAAGAVFIVASSEYKLDDIGDLVYPNP----GFKQLIIN 139
Y F+ + A T K EI C G V +E LD + +L +P F L+
Sbjct: 77 YPFVGKLVVYPAPTKKPEI-CYVEGDSVAVTFAECNLD-LNELTGNHPRNCDKFYDLVPI 134
Query: 140 SSFDDNLLEQDDKPLCIFQVTSFKCGGFSIGTSTNHATFDGLSFKVFLDNLAALAADKPL 199
L + PL QVT F G +IG + +H D + FL ++A
Sbjct: 135 LGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGN- 193
Query: 200 AIIPCNDRRLLAARSPP---RV----TFDHPEMLKLKM-PFGEESNNAPIFDITQEDLDF 251
ND LA + P R+ D + + K+ F E+ + D
Sbjct: 194 -----NDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSL--AGPSDKLR 246
Query: 252 KIFRLTPDDIANLKEKAKATVEYENSRYITGFNVVSALIWRCKALSYDHAKGKTPERESR 311
F LT I LK++ A + Y++ F V A IW C A S + ++
Sbjct: 247 ATFILTRAVINQLKDRVLA--QLPTLEYVSSFTVACAYIWSCIAKSRN-------DKLQL 297
Query: 312 MLYAVDIRPRLNPPLPASYVGNAVLSAYANAKCEELKEKP-FSRLVEMVSEGAKRMSDEY 370
+ +D R R PP+P +Y GN V A AK L K F +++ E + +Y
Sbjct: 298 FGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDY 357
Query: 371 ARSAI-DWGETY-----KGFPHGEFLVSSWWKLGFSKVEYPWGKPK 410
+ D E++ +G P VS KL F ++ WGKPK
Sbjct: 358 KDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKPK 403
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 220 FDHPEMLKLKMPFGEESNNAPIFDITQEDLDFKI----FRLTPDDIANLKEKAKATVEYE 275
HP ++ L FG +SN + +FD + DL+ I LTP I +EY
Sbjct: 69 LSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYL 128
Query: 276 NSRYI 280
+ +I
Sbjct: 129 HQHWI 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,216,071
Number of Sequences: 62578
Number of extensions: 599681
Number of successful extensions: 2640
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2603
Number of HSP's gapped (non-prelim): 9
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)