BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012690
         (458 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LN6|A Chain A, Crystal Structure Of A Bifunctional Glutathione Synthetase
           From Streptococcus Agalactiae
          Length = 750

 Score = 31.6 bits (70), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 31/164 (18%)

Query: 169 ICSINASNLTEASCPVKD-VNEFESTVDSSKLLAACQKVDPVKECCDQICQNAILEAATK 227
           +  +N  ++  +   +KD VN+ E+ V S +L+A  +   PV+    + C+N + +  T 
Sbjct: 219 LGYVNHKDIRISYTSLKDYVNDLENAVKSGQLIAEKEFYSPVRLRGSKACRNYLEKGITY 278

Query: 228 IAMKASD-----PLNMEGHNVLSDHSTRINDCKSIVLRWLGSKLDPSRSKEVLRGLSNCN 282
           +  +  D     P+ +    V + H         + L W+ S      S  + + +   N
Sbjct: 279 LEFRTFDLNPFSPIGITQETVDTVH------LFLLALLWIDS------SSHIDQDIKEAN 326

Query: 283 -VNKVCPLSFPSTKHLAKSCGDNISNQ---SACCNAMESYVSHL 322
            +N +  LS P  K         + NQ   S   +AM+S + H 
Sbjct: 327 RLNDLIALSHPLEK---------LPNQAPVSDLVDAMQSVIQHF 361


>pdb|3OF4|A Chain A, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
           Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
           L2tr At 1.90 A Resolution
 pdb|3OF4|B Chain B, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
           Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
           L2tr At 1.90 A Resolution
 pdb|3OF4|C Chain C, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
           Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
           L2tr At 1.90 A Resolution
          Length = 209

 Score = 28.5 bits (62), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 309 SACCNAMESYVSHLQKQSLITNLQALDCATLLGTKLQKSSITAD---VFKLCHISLKDFT 365
            A  + ++ Y+S L +Q  +TN +A +       KLQ  S         +  +I L  F 
Sbjct: 84  GAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAXSAATRKEWAVRQAYIGLGTFL 143

Query: 366 LQAAGNQESGCLLPSLPSDA 385
           L AA  +   C    +  DA
Sbjct: 144 LAAAELEVDSCPXEGIEHDA 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.130    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,528,042
Number of Sequences: 62578
Number of extensions: 364190
Number of successful extensions: 969
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 5
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)