BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012690
         (458 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GUI4|UGPI6_ARATH Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis
           thaliana GN=At1g61900 PE=1 SV=1
          Length = 433

 Score =  542 bits (1397), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/438 (61%), Positives = 340/438 (77%), Gaps = 22/438 (5%)

Query: 11  LSMGLLVLFLLLLCFHESCCSSMYNLKGHISVNRRVDDLLPEIPPSEAPQPFLPLLAPSP 70
             MGL V+   +  F  S CSS           ++ ++ LPEI P  +PQPFLP +APSP
Sbjct: 7   FEMGLFVILQSM--FLISLCSS-----------QKPEEFLPEISPDTSPQPFLPFIAPSP 53

Query: 71  LAPFTNSTVPKLSGHCLLNFTAAESLMSMTSIDCHAVFAPLLANVVCCPQLEATILILIG 130
           + P+ NST+PKLSG C LNF+A+ESL+  TS +C  VFAPLLANV+CCPQL+AT+ I++G
Sbjct: 54  MVPYINSTMPKLSGLCSLNFSASESLIQTTSHNCWTVFAPLLANVMCCPQLDATLTIILG 113

Query: 131 QSSRKTNMLALNGTLAEHCLSDFEQILVGQGAADDLKKICSINASNLTEASCPVKDVNEF 190
           ++S++T +LALN T ++HCLSD EQILVG+GA+  L KICSI++SNLT +SCPV +V+EF
Sbjct: 114 KASKETGLLALNRTQSKHCLSDLEQILVGKGASGQLNKICSIHSSNLTSSSCPVINVDEF 173

Query: 191 ESTVDSSKLLAACQKVDPVKECCDQICQNAILEAATKIAMKASDPLNMEGHNVLSDHSTR 250
           ESTVD++KLL AC+K+DPVKECC++ CQNAIL+AAT I++KAS+         L+D+S R
Sbjct: 174 ESTVDTAKLLLACEKIDPVKECCEEACQNAILDAATNISLKASE--------TLTDNSDR 225

Query: 251 INDCKSIVLRWLGSKLDPSRSKEVLRGLSNCNVNKVCPLSFPSTKHLAKSCGDNISNQSA 310
           INDCK++V RWL +KLDPSR KE LRGL+NC +N+VCPL FP  KH+  +C + +SNQ+ 
Sbjct: 226 INDCKNVVNRWLATKLDPSRVKETLRGLANCKINRVCPLVFPHMKHIGGNCSNELSNQTG 285

Query: 311 CCNAMESYVSHLQKQSLITNLQALDCATLLGTKLQKSSITADVFKLCHISLKDFTLQAAG 370
           CC AMESYVSHLQKQ+LITNLQALDCAT LGTKLQK +IT ++F +CHISLKDF+LQ  G
Sbjct: 286 CCRAMESYVSHLQKQTLITNLQALDCATSLGTKLQKLNITKNIFSVCHISLKDFSLQ-VG 344

Query: 371 NQESGCLLPSLPSDATFDKSSGISFICDLNDNIPAPWPSSSRLPTQSCNSSVRIPALPAA 430
           NQESGCLLPSLPSDA FDK +GISF CDLNDNIPAPWPSSS     +C   VRIPALPAA
Sbjct: 345 NQESGCLLPSLPSDAIFDKDTGISFTCDLNDNIPAPWPSSSLSSASTCKKPVRIPALPAA 404

Query: 431 ASAQSGLYNEALKFYQLF 448
           AS+Q  L++E +    +F
Sbjct: 405 ASSQPRLHDEGVTRLVIF 422


>sp|Q5L6W7|SYFB_CHLAB Phenylalanine--tRNA ligase beta subunit OS=Chlamydophila abortus
           (strain S26/3) GN=pheT PE=3 SV=1
          Length = 794

 Score = 35.4 bits (80), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 266 LDPSRSKEVLRGLSNCNVNKVCPLSFPSTK---------HLAKSCGDNISNQSACCNAME 316
            D  +  +V+ G  NC  + + PL+ P  K          + KS    I +Q  CC A E
Sbjct: 68  FDGKQEHQVVCGAPNCRPDIIVPLALPGAKLHDHEGNPYTIKKSKLRGIESQGMCCGADE 127

Query: 317 SYVSHLQK 324
              SHLQK
Sbjct: 128 LGFSHLQK 135


>sp|D0Z8F8|LPOB_EDWTE Penicillin-binding protein activator LpoB OS=Edwardsiella tarda
           (strain EIB202) GN=lpoB PE=3 SV=1
          Length = 197

 Score = 35.4 bits (80), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 99  MTSIDCHAVFAPLLANVVCCPQLEATILILIGQSSRKTN 137
           MTS+D    FAPL+  ++  P +EA  ++L+     KTN
Sbjct: 60  MTSVDWQGSFAPLIDQLLSAPGVEAGSILLVDGVQNKTN 98


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.131    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,114,159
Number of Sequences: 539616
Number of extensions: 5914415
Number of successful extensions: 17212
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 17197
Number of HSP's gapped (non-prelim): 20
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)