Query 012690
Match_columns 458
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 05:17:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09588 YqaJ: YqaJ-like viral 40.4 18 0.00039 30.7 1.7 18 315-332 135-152 (152)
2 PF01465 GRIP: GRIP domain; I 37.5 29 0.00063 26.1 2.2 24 255-279 9-32 (46)
3 PF04277 OAD_gamma: Oxaloaceta 31.8 34 0.00073 27.0 1.9 22 1-23 1-22 (79)
4 PF00023 Ank: Ankyrin repeat H 29.2 46 0.00099 22.0 1.9 21 147-167 11-31 (33)
5 COG3630 OadG Na+-transporting 23.8 50 0.0011 28.6 1.7 22 3-25 9-30 (84)
6 PF03765 CRAL_TRIO_N: CRAL/TRI 21.8 71 0.0015 23.6 2.0 24 254-277 30-54 (55)
7 PF14967 FAM70: FAM70 protein 20.6 88 0.0019 32.7 2.9 26 48-73 302-327 (327)
8 PF08105 Antimicrobial10: Metc 19.4 2.1E+02 0.0046 23.1 4.2 6 35-40 28-33 (52)
9 PRK02919 oxaloacetate decarbox 16.0 1.2E+02 0.0027 25.6 2.3 17 10-26 15-31 (82)
10 PF15234 LAT: Linker for activ 14.3 5.5E+02 0.012 25.8 6.5 52 30-81 30-86 (230)
No 1
>PF09588 YqaJ: YqaJ-like viral recombinase domain; InterPro: IPR019080 This protein is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit []. ; PDB: 3SZ5_A 3SZ4_A 3SYY_A 3K93_A 1AVQ_A 3SM4_C 3SLP_A.
Probab=40.37 E-value=18 Score=30.71 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.7
Q ss_pred hHHHHHHhhhHhhhhhhh
Q 012690 315 MESYVSHLQKQSLITNLQ 332 (458)
Q Consensus 315 ~~sYvs~lQkQ~lITNlQ 332 (458)
-+.|...+|-||+||++|
T Consensus 135 p~~Y~~QvQ~qm~vtg~e 152 (152)
T PF09588_consen 135 PHYYYAQVQHQMAVTGAE 152 (152)
T ss_dssp HHHHHHHHHHHHHHHT-S
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 678999999999999976
No 2
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=37.52 E-value=29 Score=26.13 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=18.1
Q ss_pred hhHHHHHhhcCCCcchHHHHhhhhc
Q 012690 255 KSIVLRWLGSKLDPSRSKEVLRGLS 279 (458)
Q Consensus 255 K~VVl~wLa~KL~p~~An~~lR~LS 279 (458)
||||++||..+= ++....+++.|+
T Consensus 9 KNvl~~fl~~~~-~~~~~~llpvi~ 32 (46)
T PF01465_consen 9 KNVLLQFLESRE-PSEREQLLPVIA 32 (46)
T ss_dssp HHHHHHHHTTSS----HHHHHHHHH
T ss_pred HHHHHHHhcCCc-hhhHHHHHHHHH
Confidence 899999999985 777888888775
No 3
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=31.76 E-value=34 Score=27.03 Aligned_cols=22 Identities=41% Similarity=0.860 Sum_probs=11.1
Q ss_pred CCccccchhhhHHHHHHHHHHHH
Q 012690 1 MSEGISLNLSLSMGLLVLFLLLL 23 (458)
Q Consensus 1 m~~g~~~~~~~s~~~~~~~~l~~ 23 (458)
|.+|+.+-+ ++|+.+|++|.+|
T Consensus 1 ~~~gl~i~i-~Gm~iVF~~L~lL 22 (79)
T PF04277_consen 1 MIEGLQIMI-IGMGIVFLVLILL 22 (79)
T ss_pred CchHHHHHH-HHHHHHHHHHHHH
Confidence 455665543 4555555544443
No 4
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=29.17 E-value=46 Score=22.01 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHhhCCCccccc
Q 012690 147 EHCLSDFEQILVGQGAADDLK 167 (458)
Q Consensus 147 ~~C~SDi~~iL~sqGAn~~l~ 167 (458)
.+--.|+.++|+++||+-++.
T Consensus 11 ~~~~~~~v~~Ll~~ga~~~~~ 31 (33)
T PF00023_consen 11 QRGHPDIVKLLLKHGADINAR 31 (33)
T ss_dssp HTTCHHHHHHHHHTTSCTTCB
T ss_pred HHHHHHHHHHHHHCcCCCCCC
Confidence 344679999999999998765
No 5
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=23.84 E-value=50 Score=28.61 Aligned_cols=22 Identities=50% Similarity=0.942 Sum_probs=13.3
Q ss_pred ccccchhhhHHHHHHHHHHHHhh
Q 012690 3 EGISLNLSLSMGLLVLFLLLLCF 25 (458)
Q Consensus 3 ~g~~~~~~~s~~~~~~~~l~~~~ 25 (458)
||+-+-+ +.|+|+|+||.+|..
T Consensus 9 eg~~L~v-lGmg~VflfL~iLi~ 30 (84)
T COG3630 9 EGITLMV-LGMGFVFLFLSILIY 30 (84)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Confidence 4444433 577777777776543
No 6
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=21.84 E-value=71 Score=23.62 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.0
Q ss_pred chhHHHHHh-hcCCCcchHHHHhhh
Q 012690 254 CKSIVLRWL-GSKLDPSRSKEVLRG 277 (458)
Q Consensus 254 CK~VVl~wL-a~KL~p~~An~~lR~ 277 (458)
-.++++||| |+|.+-+.|.+||+.
T Consensus 30 ~d~~llRFLRARkf~v~~A~~mL~~ 54 (55)
T PF03765_consen 30 DDNFLLRFLRARKFDVEKAFKMLKK 54 (55)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHccCCHHHHHHHHHh
Confidence 449999999 799999999999874
No 7
>PF14967 FAM70: FAM70 protein
Probab=20.61 E-value=88 Score=32.71 Aligned_cols=26 Identities=46% Similarity=0.754 Sum_probs=19.0
Q ss_pred CcCcccCCCCCCCCCCCCCCCCCCCC
Q 012690 48 DLLPEIPPSEAPQPFLPLLAPSPLAP 73 (458)
Q Consensus 48 ~~~~eisPs~~P~~~~P~la~sPm~P 73 (458)
++.+..+|--.|.+|.|.|-|||-+|
T Consensus 302 ~lp~~aPp~y~P~yf~PgEKPPPYaP 327 (327)
T PF14967_consen 302 GLPPNAPPRYAPPYFPPGEKPPPYAP 327 (327)
T ss_pred CCCCCCCCCCCCCCCCCCCCCcCCCC
Confidence 44455556667888999999998766
No 8
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=19.36 E-value=2.1e+02 Score=23.09 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=3.9
Q ss_pred ccccce
Q 012690 35 NLKGHI 40 (458)
Q Consensus 35 ~~~~~~ 40 (458)
+++|++
T Consensus 28 r~qgpi 33 (52)
T PF08105_consen 28 RRQGPI 33 (52)
T ss_pred hccCCC
Confidence 666666
No 9
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=16.03 E-value=1.2e+02 Score=25.64 Aligned_cols=17 Identities=47% Similarity=0.843 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHhhh
Q 012690 10 SLSMGLLVLFLLLLCFH 26 (458)
Q Consensus 10 ~~s~~~~~~~~l~~~~~ 26 (458)
.+.|++||+||.+|.+-
T Consensus 15 vlGMg~VfvFL~lLI~~ 31 (82)
T PRK02919 15 FLGMGFVLAFLFLLIFA 31 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777777777765543
No 10
>PF15234 LAT: Linker for activation of T-cells
Probab=14.35 E-value=5.5e+02 Score=25.76 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=32.1
Q ss_pred cCCccccccceeeccc-cCCcCcccCCCCCCCCCC----CCCCCCCCCCCCCCCCCc
Q 012690 30 CSSMYNLKGHISVNRR-VDDLLPEIPPSEAPQPFL----PLLAPSPLAPFTNSTVPK 81 (458)
Q Consensus 30 ~s~~~~~~~~~~~~~~-~~~~~~eisPs~~P~~~~----P~la~sPm~Pf~n~~~Pk 81 (458)
|--+-+.-++...+.- -.++++.-.+...|.|.- |.+.++-|.|.+.+--|-
T Consensus 30 CReLpgSydsa~~dsl~p~si~ik~p~t~~pwp~avts~pplsqPDLLpIPRSPQp~ 86 (230)
T PF15234_consen 30 CRELPGSYDSASSDSLYPRSIVIKRPQTLAPWPPAVTSYPPLSQPDLLPIPRSPQPP 86 (230)
T ss_pred HhhCCCccccCCCCCCCCcceEecCCCCCCCCCcccccCCCCCCcccccCCCCCCCC
Confidence 4433344444444333 256788888888887765 667777788877665553
Done!