Query 012690
Match_columns 458
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 14:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e2f_A Diapausin; Ca-channel b 40.6 8.9 0.0003 28.2 1.0 14 202-215 10-24 (41)
2 3kdg_A DNA mismatch repair pro 13.9 96 0.0033 27.3 2.6 31 264-294 151-181 (197)
3 3ncv_A DNA mismatch repair pro 13.0 1E+02 0.0036 28.0 2.6 31 264-294 174-204 (220)
4 2ao6_B NCOA-2, 14-MER fragment 9.4 1.2E+02 0.0042 20.4 1.3 22 256-280 3-24 (26)
5 3syy_A Exonuclease; digest dou 8.8 1.3E+02 0.0044 26.9 1.6 22 316-337 132-153 (216)
6 1upt_B Golgi autoantigen, golg 8.3 1.8E+02 0.0061 22.8 2.0 23 254-280 10-32 (60)
7 2bpt_B Nucleoporin NUP1; nucle 8.1 1.5E+02 0.0053 21.3 1.5 30 74-109 4-33 (39)
8 3sm4_A Exonuclease; homologous 7.7 1.5E+02 0.0052 26.8 1.6 22 316-337 155-176 (229)
9 3q1c_A LEE-encoded effector ES 7.3 1.1E+02 0.0038 30.6 0.6 25 360-385 85-109 (360)
10 3e0j_B DNA polymerase subunit 7.3 59 0.002 28.7 -1.3 27 251-277 15-43 (144)
No 1
>2e2f_A Diapausin; Ca-channel blocker, antifungal peptide, structural genomics, antifungal protein; NMR {Gastrophysa atrocyanea}
Probab=40.60 E-value=8.9 Score=28.24 Aligned_cols=14 Identities=36% Similarity=1.160 Sum_probs=11.2
Q ss_pred hhhcCCchh-hhhHH
Q 012690 202 ACQKVDPVK-ECCDQ 215 (458)
Q Consensus 202 AC~~VDPvk-ECC~~ 215 (458)
-|+.|||-| ||||-
T Consensus 10 vcsri~pekdeccra 24 (41)
T 2e2f_A 10 VCPRIVPERHECCRA 24 (41)
T ss_dssp STTSCSTTTHHHHHH
T ss_pred cccCcCcchhHHHHh
Confidence 589999987 78873
No 2
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=13.92 E-value=96 Score=27.31 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=27.1
Q ss_pred cCCCcchHHHHhhhhccCcCCcccccCCCCc
Q 012690 264 SKLDPSRSKEVLRGLSNCNVNKVCPLSFPST 294 (458)
Q Consensus 264 ~KL~p~~An~~lR~LS~CkVNkvCPL~F~~~ 294 (458)
.+|+.+++++.+|.|..|+.--.||-.=|-.
T Consensus 151 ~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~ 181 (197)
T 3kdg_A 151 RHLRNDEIKALLDDLRSTSDPFTCPHGRPII 181 (197)
T ss_dssp CCCCHHHHHHHHHHHHHSSCTTBCTTSCBCE
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcCCCCCcEE
Confidence 5799999999999999999999999765544
No 3
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=13.02 E-value=1e+02 Score=28.00 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=26.8
Q ss_pred cCCCcchHHHHhhhhccCcCCcccccCCCCc
Q 012690 264 SKLDPSRSKEVLRGLSNCNVNKVCPLSFPST 294 (458)
Q Consensus 264 ~KL~p~~An~~lR~LS~CkVNkvCPL~F~~~ 294 (458)
.+|+.+++++.+|.|..|+.-..||-.=|-.
T Consensus 174 ~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~ 204 (220)
T 3ncv_A 174 RRLTLPEMNALLRDMENTPRSNQCNHGRPTW 204 (220)
T ss_dssp CCCCHHHHHHHHHHHHTSTTTTBCTTSCBSE
T ss_pred CCCCHHHHHHHHHHHHhCCCCCcCCCCCcEE
Confidence 5799999999999999999999999754443
No 4
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=9.40 E-value=1.2e+02 Score=20.41 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=16.3
Q ss_pred hHHHHHhhcCCCcchHHHHhhhhcc
Q 012690 256 SIVLRWLGSKLDPSRSKEVLRGLSN 280 (458)
Q Consensus 256 ~VVl~wLa~KL~p~~An~~lR~LS~ 280 (458)
|-.+||| |+-+..|.++|-|-+
T Consensus 3 ~~LLRyL---LDkDdgnaalryllg 24 (26)
T 2ao6_B 3 NALLRYL---LDKDDGNAALRYLLG 24 (26)
T ss_pred cHHHHHH---HccccchHHHHHHhc
Confidence 5678888 556788889987643
No 5
>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity, hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A* 3sz5_A
Probab=8.82 E-value=1.3e+02 Score=26.90 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=18.5
Q ss_pred HHHHHHhhhHhhhhhhhHHHHH
Q 012690 316 ESYVSHLQKQSLITNLQALDCA 337 (458)
Q Consensus 316 ~sYvs~lQkQ~lITNlQAl~CA 337 (458)
..|...+|-||+||+++..+=+
T Consensus 132 ~~Y~~QvQ~qm~Vtg~~~~~f~ 153 (216)
T 3syy_A 132 PEYIKQMQTQMACTGRQWCDFV 153 (216)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEE
Confidence 5799999999999998865544
No 6
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=8.30 E-value=1.8e+02 Score=22.85 Aligned_cols=23 Identities=4% Similarity=0.359 Sum_probs=16.3
Q ss_pred chhHHHHHhhcCCCcchHHHHhhhhcc
Q 012690 254 CKSIVLRWLGSKLDPSRSKEVLRGLSN 280 (458)
Q Consensus 254 CK~VVl~wLa~KL~p~~An~~lR~LS~ 280 (458)
=||||++|+-.+ +.+++++.+..
T Consensus 10 LrNVl~~ym~g~----~~~~m~kaI~a 32 (60)
T 1upt_B 10 LRKVLFEYMMGR----ETKTMAKVITT 32 (60)
T ss_dssp HHHHHHHHHTTS----SHHHHHHHHHH
T ss_pred HHHHHHHHHHcc----cHHHHHHHHHH
Confidence 489999999876 55556655543
No 7
>2bpt_B Nucleoporin NUP1; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae}
Probab=8.14 E-value=1.5e+02 Score=21.34 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=14.3
Q ss_pred CCCCCCCccccccccchhhhhhhhhhhccchhhhhh
Q 012690 74 FTNSTVPKLSGHCLLNFTAAESLMSMTSIDCHAVFA 109 (458)
Q Consensus 74 f~n~~~PkLsG~C~lNFsA~~~lm~~TA~DC~~~fA 109 (458)
|+-+++|+ .|||-+..=|+.||.+-.-|--
T Consensus 4 ftpstvpn------infsglnggitntatnalrpsd 33 (39)
T 2bpt_B 4 FTPSTVPN------INFSGLNGGITNTATNALRPSD 33 (39)
T ss_dssp CCCCSSCC------CCCC---------CCC-CCGGG
T ss_pred ccccccCc------ccccccccccccccccccCchh
Confidence 66778886 5999999999999987655533
No 8
>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A
Probab=7.71 E-value=1.5e+02 Score=26.84 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.5
Q ss_pred HHHHHHhhhHhhhhhhhHHHHH
Q 012690 316 ESYVSHLQKQSLITNLQALDCA 337 (458)
Q Consensus 316 ~sYvs~lQkQ~lITNlQAl~CA 337 (458)
+.|...+|-||.||+++..+=+
T Consensus 155 ~~Y~~QvQ~qm~vtg~~~~~f~ 176 (229)
T 3sm4_A 155 SAYMAQVQYSMWVTRKNAWYFA 176 (229)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEE
Confidence 7899999999999999874433
No 9
>3q1c_A LEE-encoded effector ESPG; VIRA fold, virulence factor, PAK recruitment and activation, activated kinase, signaling protein; 1.60A {Escherichia coli O127} PDB: 4fma_A 4fmd_A* 4fme_A* 4fmc_A* 3pcr_A* 3pcs_A
Probab=7.35 E-value=1.1e+02 Score=30.64 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=20.3
Q ss_pred ccccccccccccccccccCCCCCCCc
Q 012690 360 SLKDFTLQAAGNQESGCLLPSLPSDA 385 (458)
Q Consensus 360 ~LKDFSLQ~~g~~esGCLL~SLPsDa 385 (458)
|=++++.|.- +.|+-|||.|||-|.
T Consensus 85 d~~ki~v~LE-sneqn~LL~SLPv~~ 109 (360)
T 3q1c_A 85 DNEKITVLLE-SNEQNRLLQSLPIDR 109 (360)
T ss_dssp TCCEEEEEEC-CCTTTCTGGGSSCEE
T ss_pred CCceeEEecc-cchhhhhhhcCCchh
Confidence 4467888876 569999999999875
No 10
>3e0j_B DNA polymerase subunit delta-3; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=7.26 E-value=59 Score=28.67 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=19.4
Q ss_pred cccchhHHHHHhhcCCC--cchHHHHhhh
Q 012690 251 INDCKSIVLRWLGSKLD--PSRSKEVLRG 277 (458)
Q Consensus 251 v~DCK~VVl~wLa~KL~--p~~An~~lR~ 277 (458)
.++-|-|=+||||+.|+ ...||++|.-
T Consensus 15 ~de~k~VTYr~LSr~l~VhvN~AK~mL~e 43 (144)
T 3e0j_B 15 TDQNKIVTYKWLSYTLGVHVNQAKQMLYD 43 (144)
T ss_dssp TTTCCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhCCceEEHHHHHHHhCCCHHHHHHHHHH
Confidence 34456677999999876 4678887743
Done!