Query 012690
Match_columns 458
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 14:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012690.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012690hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmeb2 f.17.2.1 (B:3-36) Bact 18.1 28 0.0021 22.9 1.9 15 7-21 17-31 (34)
2 d1jfla1 c.78.2.1 (A:1-115) Asp 15.2 26 0.0019 26.7 1.3 37 309-348 79-115 (115)
3 d1auaa1 a.5.3.1 (A:4-96) N-ter 12.8 45 0.0033 25.0 2.0 22 256-277 53-75 (93)
4 d1olma1 a.5.3.1 (A:1-75) Super 12.8 47 0.0034 23.4 2.0 22 256-277 36-58 (75)
5 d2cvla1 d.79.1.1 (A:1-124) Put 12.5 68 0.0049 24.0 3.0 42 129-172 29-73 (124)
6 d1r5la1 a.5.3.1 (A:25-90) Alph 8.2 1.1E+02 0.0079 21.5 2.6 24 256-279 26-50 (66)
7 d5nula_ c.23.5.1 (A:) Flavodox 8.0 63 0.0046 23.7 1.3 30 335-364 14-43 (138)
8 d1ykga1 c.23.5.2 (A:63-208) Su 7.8 1E+02 0.0073 24.1 2.5 32 333-364 12-43 (146)
9 d1avqa_ c.52.1.13 (A:) lambda 7.7 71 0.0052 26.6 1.6 18 317-334 155-172 (228)
10 d1wdya_ d.211.1.1 (A:) RNase L 7.7 67 0.0049 24.7 1.4 25 145-169 260-284 (285)
No 1
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=18.06 E-value=28 Score=22.88 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=11.3
Q ss_pred chhhhHHHHHHHHHH
Q 012690 7 LNLSLSMGLLVLFLL 21 (458)
Q Consensus 7 ~~~~~s~~~~~~~~l 21 (458)
+-|||.|+|+|+-+.
T Consensus 17 lafslamlfvfiali 31 (34)
T d1xmeb2 17 LAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467889998887654
No 2
>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.23 E-value=26 Score=26.71 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=28.1
Q ss_pred hhhhhhhHHHHHHhhhHhhhhhhhHHHHHhHHhhhhhhcC
Q 012690 309 SACCNAMESYVSHLQKQSLITNLQALDCATLLGTKLQKSS 348 (458)
Q Consensus 309 ~sCC~a~~sYvs~lQkQ~lITNlQAl~CAt~lGskLqk~~ 348 (458)
.-||..+|.|...+|++. |+-=|+=+...+.++|+.|
T Consensus 79 ~i~cNT~H~~~d~i~~~~---~iP~l~i~~~t~~~i~~~G 115 (115)
T d1jfla1 79 IMPCNTAHAFVEDIRKAI---KIPIISMIEETAKKVKELG 115 (115)
T ss_dssp ECSCTGGGGGHHHHHHHC---SSCBCCHHHHHHHHHHHTT
T ss_pred EEcCcHHHHHHHHHHHHC---CCCEecHHHHHHHHHHhcC
Confidence 468999999999999976 5555566666677777665
No 3
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.78 E-value=45 Score=25.00 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.5
Q ss_pred hHHHHHh-hcCCCcchHHHHhhh
Q 012690 256 SIVLRWL-GSKLDPSRSKEVLRG 277 (458)
Q Consensus 256 ~VVl~wL-a~KL~p~~An~~lR~ 277 (458)
..++||| |+|.+.+.|.+||+.
T Consensus 53 ~~llRfLrAr~fd~~~a~~ml~~ 75 (93)
T d1auaa1 53 STLLRFLRARKFDVQLAKEMFEN 75 (93)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHH
Confidence 6799999 789999999999974
No 4
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.78 E-value=47 Score=23.41 Aligned_cols=22 Identities=36% Similarity=0.729 Sum_probs=19.1
Q ss_pred hHHHHHh-hcCCCcchHHHHhhh
Q 012690 256 SIVLRWL-GSKLDPSRSKEVLRG 277 (458)
Q Consensus 256 ~VVl~wL-a~KL~p~~An~~lR~ 277 (458)
..++||| |+|.+.+.|.++||.
T Consensus 36 ~~LlRFLrAr~fdv~kA~~ml~~ 58 (75)
T d1olma1 36 YFLLRWLRARSFDLQKSEAMLRK 58 (75)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Confidence 6789999 679999999999974
No 5
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]}
Probab=12.51 E-value=68 Score=24.02 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=29.7
Q ss_pred hhcccCCcCceecC---hhhhhhhHHHHHHHHhhCCCcccccccccc
Q 012690 129 IGQSSRKTNMLALN---GTLAEHCLSDFEQILVGQGAADDLKKICSI 172 (458)
Q Consensus 129 ~Gq~S~~s~~LaLn---~t~A~~C~SDi~~iL~sqGAn~~l~~iCSv 172 (458)
-||-+.+.+...+. .+.++.||..+.++|.+.|+. +..+..+
T Consensus 29 SGq~~~d~~~~~~~~~~~~Q~~~~l~~i~~~L~~~G~~--~~dvvk~ 73 (124)
T d2cvla1 29 SGQIPLAPDGSLVEGDIRVQTERVMENLKAVLEAAGSG--LSRVVQT 73 (124)
T ss_dssp EEECSBCTTSCBCCSSHHHHHHHHHHHHHHHHHHTTCC--GGGEEEE
T ss_pred EEecCCCCCcccccCCHhHHHHHHHHHHHHHHHHhcCC--ccccEEE
Confidence 45555555544444 568899999999999999995 4455543
No 6
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.23 E-value=1.1e+02 Score=21.45 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.4
Q ss_pred hHHHHHh-hcCCCcchHHHHhhhhc
Q 012690 256 SIVLRWL-GSKLDPSRSKEVLRGLS 279 (458)
Q Consensus 256 ~VVl~wL-a~KL~p~~An~~lR~LS 279 (458)
...+||| |+|.+.+.|.++++.--
T Consensus 26 ~~LlrFLRarkf~~~ka~~~l~~y~ 50 (66)
T d1r5la1 26 SFLLRFLRARDFDLDLAWRLLKNYY 50 (66)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6889998 68899999999998643
No 7
>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}
Probab=8.04 E-value=63 Score=23.75 Aligned_cols=30 Identities=10% Similarity=0.326 Sum_probs=24.7
Q ss_pred HHHhHHhhhhhhcCcccccccccccccccc
Q 012690 335 DCATLLGTKLQKSSITADVFKLCHISLKDF 364 (458)
Q Consensus 335 ~CAt~lGskLqk~~V~~niY~LC~I~LKDF 364 (458)
.-|..++..|++.|+...+|.+.+++..||
T Consensus 14 ~vA~~ia~~l~~~g~~v~~~~~~~~~~~~l 43 (138)
T d5nula_ 14 KMAELIAKGIIESGKDVNTINVSDVNIDEL 43 (138)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEGGGCCHHHH
T ss_pred HHHHHHHHHHHhcCCcceeccccccccccc
Confidence 347788889999999999999999866553
No 8
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.80 E-value=1e+02 Score=24.12 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=27.0
Q ss_pred HHHHHhHHhhhhhhcCcccccccccccccccc
Q 012690 333 ALDCATLLGTKLQKSSITADVFKLCHISLKDF 364 (458)
Q Consensus 333 Al~CAt~lGskLqk~~V~~niY~LC~I~LKDF 364 (458)
|-..|..|...|++.|+...++++-+++..++
T Consensus 12 ae~~A~~l~~~l~~~g~~~~~~~~~~~~~~~l 43 (146)
T d1ykga1 12 ARRVAEALRDDLLAAKLNVKLVNAGDYKFKQI 43 (146)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGG
T ss_pred HHHHHHHHHHHHHHCCCCceEeeccccchhhc
Confidence 44568889999999999999999998887765
No 9
>d1avqa_ c.52.1.13 (A:) lambda exonuclease {Bacteriophage lambda [TaxId: 10710]}
Probab=7.73 E-value=71 Score=26.57 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=16.0
Q ss_pred HHHHHhhhHhhhhhhhHH
Q 012690 317 SYVSHLQKQSLITNLQAL 334 (458)
Q Consensus 317 sYvs~lQkQ~lITNlQAl 334 (458)
.|...+|-||+||+++..
T Consensus 155 ~Y~~QvQ~qM~vtg~~~~ 172 (228)
T d1avqa_ 155 AYMAQVQYSMWVTRKNAW 172 (228)
T ss_dssp HHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 599999999999999843
No 10
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.72 E-value=67 Score=24.73 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHHHhhCCCccccccc
Q 012690 145 LAEHCLSDFEQILVGQGAADDLKKI 169 (458)
Q Consensus 145 ~A~~C~SDi~~iL~sqGAn~~l~~i 169 (458)
.+.+.-.++.++|.+.||+-+.+.+
T Consensus 260 A~~~~~~eiv~~Ll~~GAd~n~~d~ 284 (285)
T d1wdya_ 260 AVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred HHHcCCHHHHHHHHHCCCCCCcccC
Confidence 3455678899999999999887653
Done!