Query 012693
Match_columns 458
No_of_seqs 132 out of 1370
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00013 groEL chaperonin GroE 100.0 1.3E-96 3E-101 784.5 49.2 451 5-457 52-508 (542)
2 PRK12849 groEL chaperonin GroE 100.0 3.1E-96 7E-101 781.7 48.3 446 5-457 52-507 (542)
3 PRK12852 groEL chaperonin GroE 100.0 4.1E-96 9E-101 783.1 48.2 447 5-457 53-509 (545)
4 cd03344 GroEL GroEL_like type 100.0 7E-96 2E-100 776.8 49.3 450 5-457 50-505 (520)
5 PRK14104 chaperonin GroEL; Pro 100.0 7.3E-96 2E-100 779.4 47.1 447 5-457 53-509 (546)
6 PTZ00114 Heat shock protein 60 100.0 1.3E-95 3E-100 780.1 48.1 451 5-457 64-524 (555)
7 TIGR02348 GroEL chaperonin Gro 100.0 2.4E-95 5E-100 773.9 48.8 450 5-457 51-506 (524)
8 PRK12850 groEL chaperonin GroE 100.0 7.3E-95 1.6E-99 772.1 48.1 450 5-457 53-508 (544)
9 CHL00093 groEL chaperonin GroE 100.0 5.2E-95 1.1E-99 772.1 46.9 449 5-457 52-509 (529)
10 PRK12851 groEL chaperonin GroE 100.0 2E-94 4.2E-99 768.4 48.1 450 5-457 53-508 (541)
11 PLN03167 Chaperonin-60 beta su 100.0 1E-93 2.2E-98 767.6 46.4 450 5-457 108-565 (600)
12 KOG0356 Mitochondrial chaperon 100.0 4.1E-84 9E-89 654.6 32.8 446 7-457 68-521 (550)
13 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 4.3E-77 9.3E-82 629.7 34.9 386 5-457 54-467 (484)
14 cd03343 cpn60 cpn60 chaperonin 100.0 3.6E-76 7.8E-81 628.7 39.3 392 5-457 57-501 (517)
15 TIGR02347 chap_CCT_zeta T-comp 100.0 3.8E-76 8.2E-81 627.7 39.1 392 5-457 58-510 (531)
16 COG0459 GroL Chaperonin GroEL 100.0 5.9E-78 1.3E-82 634.6 23.4 423 6-457 54-498 (524)
17 TIGR02339 thermosome_arch ther 100.0 6.4E-76 1.4E-80 626.6 39.1 392 5-457 58-504 (519)
18 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.7E-75 5.8E-80 622.6 38.6 397 5-457 50-510 (527)
19 TIGR02342 chap_CCT_delta T-com 100.0 2.7E-75 5.8E-80 620.9 36.8 398 5-457 51-501 (517)
20 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.2E-75 4.7E-80 622.2 35.9 399 5-457 50-500 (515)
21 TIGR02340 chap_CCT_alpha T-com 100.0 7.8E-75 1.7E-79 619.8 38.4 397 5-457 54-514 (536)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 6.2E-75 1.3E-79 619.6 36.7 392 5-457 65-512 (526)
23 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.7E-74 3.6E-79 616.1 39.2 395 5-457 58-504 (522)
24 TIGR02343 chap_CCT_epsi T-comp 100.0 1.4E-74 3E-79 616.7 37.2 392 5-457 69-516 (532)
25 TIGR02344 chap_CCT_gamma T-com 100.0 2.9E-74 6.2E-79 614.7 38.0 392 5-457 58-506 (525)
26 TIGR02345 chap_CCT_eta T-compl 100.0 4.4E-74 9.6E-79 612.2 37.7 395 5-457 59-504 (522)
27 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.4E-73 3.1E-78 607.7 39.3 391 5-457 57-498 (517)
28 TIGR02346 chap_CCT_theta T-com 100.0 2.1E-74 4.5E-79 615.2 33.0 391 5-457 60-504 (531)
29 PTZ00212 T-complex protein 1 s 100.0 4.5E-73 9.7E-78 605.5 38.7 391 5-457 69-510 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.3E-73 4.9E-78 601.1 34.2 375 5-457 58-465 (480)
31 KOG0361 Chaperonin complex com 100.0 4.5E-74 9.7E-79 557.2 24.4 394 6-457 63-507 (543)
32 TIGR02341 chap_CCT_beta T-comp 100.0 1.3E-72 2.9E-77 599.8 35.2 391 5-457 58-499 (519)
33 cd00309 chaperonin_type_I_II c 100.0 5.3E-71 1.2E-75 582.0 38.6 375 5-457 50-450 (464)
34 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.6E-71 5.5E-76 584.3 35.3 377 5-457 50-456 (472)
35 KOG0358 Chaperonin complex com 100.0 5.8E-68 1.2E-72 513.9 22.3 404 6-457 69-518 (534)
36 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 7.5E-66 1.6E-70 545.5 35.5 392 5-457 31-468 (485)
37 KOG0363 Chaperonin complex com 100.0 9.1E-66 2E-70 496.4 27.3 390 6-457 63-503 (527)
38 KOG0360 Chaperonin complex com 100.0 4.4E-60 9.6E-65 470.1 20.9 396 6-458 62-521 (545)
39 KOG0364 Chaperonin complex com 100.0 7.4E-59 1.6E-63 457.6 20.3 391 6-457 62-505 (527)
40 KOG0362 Chaperonin complex com 100.0 1.2E-56 2.6E-61 448.4 30.2 395 5-457 68-505 (537)
41 KOG0359 Chaperonin complex com 100.0 1.7E-55 3.6E-60 433.3 20.6 391 5-457 59-499 (520)
42 KOG0357 Chaperonin complex com 100.0 1.5E-53 3.3E-58 408.4 14.8 297 15-457 71-380 (400)
43 cd03333 chaperonin_like chaper 100.0 1.7E-27 3.8E-32 225.5 20.1 192 95-358 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 2.7E-25 5.9E-30 217.1 20.8 198 108-359 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 98.7 1.9E-07 4.1E-12 105.9 14.5 204 110-368 336-577 (1598)
46 COG0459 GroL Chaperonin GroEL 97.2 0.00052 1.1E-08 73.7 6.0 90 186-291 259-355 (524)
47 PRK13600 putative ribosomal pr 44.0 82 0.0018 25.4 5.9 55 188-252 20-74 (84)
48 TIGR02341 chap_CCT_beta T-comp 42.5 55 0.0012 35.4 6.3 43 116-159 167-211 (519)
49 TIGR02345 chap_CCT_eta T-compl 29.4 22 0.00047 38.5 0.6 60 196-256 246-314 (522)
50 PRK06683 hypothetical protein; 26.2 1.3E+02 0.0029 23.9 4.5 54 189-252 19-72 (82)
51 smart00574 POX domain associat 25.7 1E+02 0.0022 27.2 4.0 41 337-377 85-126 (140)
52 COG3962 Acetolactate synthase 24.6 34 0.00075 36.2 1.0 37 343-379 217-253 (617)
53 PF09050 SNN_linker: Stannin u 24.6 29 0.00063 20.9 0.3 17 28-44 5-23 (26)
54 PRK10343 RNA-binding protein Y 22.7 4.4E+02 0.0096 21.8 7.2 68 187-256 8-77 (97)
55 PF01985 CRS1_YhbY: CRS1 / Yhb 21.5 2.5E+02 0.0055 22.2 5.3 66 189-256 8-75 (84)
56 KOG2663 Acetolactate synthase, 20.7 96 0.0021 30.3 3.1 27 326-353 121-147 (309)
No 1
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.3e-96 Score=784.50 Aligned_cols=451 Identities=39% Similarity=0.559 Sum_probs=429.5
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++++. +.+++++|++||+|+||||||+++||++||+++.+|++ |+||..|++||++|.+.++++
T Consensus 52 G~tIlk~i~~~hp~~~~~--akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~ 129 (542)
T PRK00013 52 GVTVAKEIELEDPFENMG--AQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEE 129 (542)
T ss_pred HHHHHHHccCCCchhhHH--HHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999975543 55668999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012693 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (458)
Q Consensus 84 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (458)
|+++++|+++.++|.++|++|+++++.+++++++|+..+++++.|+|+.+++..+++++++|++|++||.+|||.+++++
T Consensus 130 L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~ 209 (542)
T PRK00013 130 LKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEK 209 (542)
T ss_pred HHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccC
Confidence 99999999888899999999998899999999999999998888999877767778999999999999999999998888
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHH
Q 012693 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (458)
Q Consensus 164 ~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le 243 (458)
++..++||+|+++|++|++++++.++++++.++|+||||++++|+++|+++|+.|+++|+++|++||+|+|+++|+++|+
T Consensus 210 ~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~ 289 (542)
T PRK00013 210 MEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLE 289 (542)
T ss_pred CeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012693 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (458)
Q Consensus 244 ~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~eRl~ 319 (458)
|||++|||++++++.+.+++++++++||+|+.|++++++++||+++++++++..|+++|+++++++.+ ++|+||++
T Consensus 290 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~ 369 (542)
T PRK00013 290 DIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLA 369 (542)
T ss_pred HHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 99999999999988777899999999999999999999999999999999999999999999999877 99999999
Q ss_pred hhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 012693 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (458)
Q Consensus 320 ~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~~i~~~a~AL~~i 399 (458)
||+|+.+||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|++|+++...++++|+++++|++||+.|
T Consensus 370 ~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 449 (542)
T PRK00013 370 KLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRALEAP 449 (542)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998434899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 400 p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
||+||+|||+|+.++ .+|++..++++|||+.+|++.||++.|||||+.||+++|++|+
T Consensus 450 p~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 508 (542)
T PRK00013 450 LRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAA 508 (542)
T ss_pred HHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHH
Confidence 999999999999999 9998754568999999999999999999999999999999986
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.1e-96 Score=781.69 Aligned_cols=446 Identities=41% Similarity=0.585 Sum_probs=428.3
Q ss_pred HHHHhhhccccCc----cccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (458)
Q Consensus 5 ~~~il~~~~~~~p----~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~ 79 (458)
..+|||+|++.|| +||++ +++|++||+|+||||||+++||++||+++.+|++ |+||..|++||++|.+.
T Consensus 52 GaTIlk~i~~~hp~~~~~a~ll------~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~ 125 (542)
T PRK12849 52 GVSIAKEIELEDPFENLGAQLV------KEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEA 125 (542)
T ss_pred HHHHHHHcccCCccHhHHHHHH------HHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4689999999999 66654 8999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccc
Q 012693 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (458)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~ 159 (458)
++++|+++++|+++.++|.++|+||+++++.+++++++|+.+++.++.+.++.|++.+|++++++|++|++||.+|||.+
T Consensus 126 ~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~ 205 (542)
T PRK12849 126 VVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVT 205 (542)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccc
Confidence 99999999999988888999999999989999999999999999888889999998888899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchh
Q 012693 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (458)
Q Consensus 160 ~~~~~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~ 239 (458)
+.++++..++||+|+++|++|++++++.++++++.++|+||||++++|+++|+++|+.|++++.++|++||+|+|+++|+
T Consensus 206 ~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~ 285 (542)
T PRK12849 206 DPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 285 (542)
T ss_pred cccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012693 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (458)
Q Consensus 240 ~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~ 315 (458)
++++|||.+|||++++++.+.+++++++++||+|++|++++++++++++++++++++.|+++|+++++++++ ++|+
T Consensus 286 ~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~ 365 (542)
T PRK12849 286 AMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQ 365 (542)
T ss_pred hHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999999988777899999999999999999999999999999999999999999999998876 9999
Q ss_pred HHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012693 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (458)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~~i~~~a~A 395 (458)
||++||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|++|++++..++++|+++++|++|
T Consensus 366 eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~A 445 (542)
T PRK12849 366 ERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRA 445 (542)
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999984489999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 396 L~~ip~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|++||++||+|||+|+.++ .+|++.. +++|||+.+|++.||++.|||||+.||.++|++|+
T Consensus 446 l~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~ 507 (542)
T PRK12849 446 LEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAA 507 (542)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHHHHHHHH
Confidence 9999999999999999999 9998754 57999999999999999999999999999999986
No 3
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.1e-96 Score=783.15 Aligned_cols=447 Identities=37% Similarity=0.577 Sum_probs=428.5
Q ss_pred HHHHhhhcccc----CccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (458)
Q Consensus 5 ~~~il~~~~~~----~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~ 79 (458)
..+|||+|++. ||.+|++ +++|++||+|+||||||+++||++||+++.+|++ |+||..|++||++|.+.
T Consensus 53 G~TIlk~i~~~~~~~~p~akll------~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (545)
T PRK12852 53 GVTVAKEIELEDKFENMGAQMV------REVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAA 126 (545)
T ss_pred HHHHHHHccCCCcccChHHHHH------HHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 46899999995 7777765 8999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccc
Q 012693 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (458)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~ 159 (458)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.++++++.|.++.|++..+++++++|++|++||.+|||++
T Consensus 127 ~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~ 206 (545)
T PRK12852 127 VVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVT 206 (545)
T ss_pred HHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCcccc
Confidence 99999999999987778999999999989999999999999999989999999888767899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchh
Q 012693 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (458)
Q Consensus 160 ~~~~~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~ 239 (458)
++++|+..+++|+|+++|.+|+++++++|+|+.+.++|+||||++++|+++|+++|+.|++++.++|++||+|+|+++|+
T Consensus 207 ~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 207 NAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred ccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012693 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (458)
Q Consensus 240 ~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~ 315 (458)
++|+|||++|||++++++.+.+++++++++||+|++|+++++++++++++++++.++.|+++|+++++++.+ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQ 366 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999987777889999999999999999999999999999999999999999999998766 8999
Q ss_pred HHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012693 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (458)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~~i~~~a~A 395 (458)
|||+||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|++|++++..++++|+|+++|++|
T Consensus 367 ~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 446 (545)
T PRK12852 367 ERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKA 446 (545)
T ss_pred HHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886678899999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 396 L~~ip~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|++||++||+|||+|+.++ .+|++..++++|||+.+|+++||++.|||||+.||+++|++|+
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (545)
T PRK12852 447 LEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAA 509 (545)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHH
Confidence 9999999999999999999 9998755678999999999999999999999999999999986
No 4
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7e-96 Score=776.76 Aligned_cols=450 Identities=42% Similarity=0.608 Sum_probs=430.2
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||.+++. +.+++++|++||+|+||||||+++||++||+++.++++ |+||..|++||++|.+.++++
T Consensus 50 G~tIlk~i~~~hp~~~~~--a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~ 127 (520)
T cd03344 50 GVTVAKEIELEDPFENMG--AQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEE 127 (520)
T ss_pred HHHHHHHcccCCcchhHH--HHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 468999999999955543 45568999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012693 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (458)
Q Consensus 84 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (458)
|+++++|+++.++|.++|+||+++++.+++++++|+.+++.++.|.+++|++..|++++++|++|++||.+|||.++|++
T Consensus 128 L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 207 (520)
T cd03344 128 LKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEK 207 (520)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCccc
Confidence 99999999888899999999999999999999999999998888999999998887999999999999999999999988
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHH
Q 012693 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (458)
Q Consensus 164 ~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le 243 (458)
++.+++||+|+++|+++++++++.++++.+.++|+||||++++|+++|+++|..|++++..++++||+|+++++++++++
T Consensus 208 ~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~ 287 (520)
T cd03344 208 MEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLE 287 (520)
T ss_pred CeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012693 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (458)
Q Consensus 244 ~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~eRl~ 319 (458)
|||++|||++++++.+..++++++++||+|++|++++++++|+++++++++++.|+++|+++++++++ ++|+||++
T Consensus 288 ~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 367 (520)
T cd03344 288 DIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLA 367 (520)
T ss_pred HHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999988777789999999999999999999999999999999999999999999998876 99999999
Q ss_pred hhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 012693 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (458)
Q Consensus 320 ~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~~i~~~a~AL~~i 399 (458)
||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|++|++++..++++|+|+++|++||+.|
T Consensus 368 ~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~i 447 (520)
T cd03344 368 KLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAP 447 (520)
T ss_pred HhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998777899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 400 p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|++||+|||+|+.++ ++|++..+ ++|||+.+|+++||++.|||||+.||.++|++|+
T Consensus 448 p~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~ 505 (520)
T cd03344 448 LRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAA 505 (520)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHH
Confidence 999999999999999 99987544 8999999999999999999999999999999986
No 5
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=7.3e-96 Score=779.44 Aligned_cols=447 Identities=39% Similarity=0.584 Sum_probs=430.0
Q ss_pred HHHHhhhcccc----CccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (458)
Q Consensus 5 ~~~il~~~~~~----~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~ 79 (458)
..+|||+|++. ||.+|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.
T Consensus 53 G~tIlk~i~~~d~~~~pgakll------~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (546)
T PRK14104 53 GVTVAKEIELEDKFENMGAQMV------REVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEA 126 (546)
T ss_pred HHHHHHHhcCCCcccChHHHHH------HHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Confidence 46899999999 9998866 8999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccc
Q 012693 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (458)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~ 159 (458)
+++.|+++++|+++.+++.++|++|+++++.+++++++|+.+++.+|.|.++.+++.++++++++|++|++||.+|||.+
T Consensus 127 ~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~ 206 (546)
T PRK14104 127 VVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVT 206 (546)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhc
Confidence 99999999999987778999999999999999999999999999999999998887777899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchh
Q 012693 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (458)
Q Consensus 160 ~~~~~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~ 239 (458)
+++.+..++++|+|+++|.+++++++++|+|+.+.++|+||||++++|+++|+++|..|++++.++|++||+|+||++|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~ 286 (546)
T PRK14104 207 NADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (546)
T ss_pred CcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012693 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (458)
Q Consensus 240 ~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~ 315 (458)
++|+|||++|||++++++.++.++++++++||+|++|+++++++++++++++++.+..|+++|+++++++++ ++|+
T Consensus 287 ~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (546)
T PRK14104 287 AMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQ 366 (546)
T ss_pred HHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998888899999999999999999999999999999999999999999999999877 9999
Q ss_pred HHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012693 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (458)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~~i~~~a~A 395 (458)
|||+||+|++|||+|||+|+++++|++|+++||+|++++++++|||||||++|+++|..|+++...++++|+|+++|++|
T Consensus 367 eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 446 (546)
T PRK14104 367 ERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKA 446 (546)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998865588999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 396 L~~ip~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|+.||++||+|||+|+.++ .+|++.+++++|||+.+|+++||++.|||||+.||+++|++|+
T Consensus 447 l~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (546)
T PRK14104 447 LSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAA 509 (546)
T ss_pred HHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHH
Confidence 9999999999999999999 9998755668999999999999999999999999999999986
No 6
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.3e-95 Score=780.13 Aligned_cols=451 Identities=41% Similarity=0.609 Sum_probs=427.6
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||.+.+. +.+++++|++||+++||||||+|+||++||+++.+|++ |+||..|++||++|.+.++++
T Consensus 64 G~TIlk~i~~~~p~~~~~--a~ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~ 141 (555)
T PTZ00114 64 GVTVAKAIEFSDRFENVG--AQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLES 141 (555)
T ss_pred hHHHHHhcCcCCcchhHH--HHHHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 458999999999933322 33458999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012693 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (458)
Q Consensus 84 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (458)
|+++++|+++.++|.++|+||+++++.+++++++|+.+++++|.|.++.|++++|++++++|++|++||.+|||.+++++
T Consensus 142 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~ 221 (555)
T PTZ00114 142 LKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKT 221 (555)
T ss_pred HHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEecccccccccccccc
Confidence 99999999888889999999999899999999999999998888999999998887799999999999999999999999
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHH
Q 012693 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (458)
Q Consensus 164 ~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le 243 (458)
++.++++|+|+++|.+|++++++.|+|+.+.++|+||+|++++|+++|+++|..|++++.++|++||+|++|++++++|+
T Consensus 222 ~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~ 301 (555)
T PTZ00114 222 QKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQ 301 (555)
T ss_pred CeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCC-CCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHH
Q 012693 244 DLAILTGGQVLTGG-SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (458)
Q Consensus 244 ~la~~tG~~i~s~~-~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~eRl 318 (458)
|||++|||+++++. .++.++++++++||+|++|+++++++++++++++++.|++|+++|+++++..++ ++|+||+
T Consensus 302 ~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~ 381 (555)
T PTZ00114 302 DIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERL 381 (555)
T ss_pred HHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999997 667778899999999999999999999999999999999999999999988765 8999999
Q ss_pred hhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcC---CChhHHHHHHHHHHH
Q 012693 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT---TNSDQKIGVQIVQNA 395 (458)
Q Consensus 319 ~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~---~~~~e~~~i~~~a~A 395 (458)
+||+|++|||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|++|++++. .++++|+|+++|++|
T Consensus 382 ~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~A 461 (555)
T PTZ00114 382 AKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNA 461 (555)
T ss_pred HhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999874 378999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 396 L~~ip~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|++||++||+|||+|+.++ .+|++.+++++|||+.+|++.||++.|||||+.||+++|++|+
T Consensus 462 L~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 524 (555)
T PTZ00114 462 LRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAA 524 (555)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHH
Confidence 9999999999999999999 9997755678999999999999999999999999999999986
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2.4e-95 Score=773.86 Aligned_cols=450 Identities=38% Similarity=0.566 Sum_probs=427.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++++. +.+++++|++||+|+||||||+++||++||+++.+|++ |+||..|++||++|.+.++++
T Consensus 51 G~tIlk~i~~~hp~~~~~--akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~ 128 (524)
T TIGR02348 51 GVTVAKEIELEDKFENMG--AQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEE 128 (524)
T ss_pred HHHHHHHccCCChhhHHH--HHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999955543 55668999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012693 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (458)
Q Consensus 84 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (458)
|+++++|+++.++|.++|++|+++++.+++++++|+.++++++.|.|+.|++..|++++++|++|++||.+|||.+++++
T Consensus 129 L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~ 208 (524)
T TIGR02348 129 LKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEK 208 (524)
T ss_pred HHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccC
Confidence 99999999888899999999999899999999999999998888999988888788999999999999999999998889
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHH
Q 012693 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (458)
Q Consensus 164 ~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le 243 (458)
++..++||+|+++|++|++++++.++++.+.++|+||||++++|+++|+++|+.|++++++++++||+|+|+++|+++++
T Consensus 209 ~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~ 288 (524)
T TIGR02348 209 MEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLE 288 (524)
T ss_pred CeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012693 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (458)
Q Consensus 244 ~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~eRl~ 319 (458)
|||++|||++++++.+++++++++++||+|+.|+++++++++++++++++++..|+++|+++++++.+ ++|+||++
T Consensus 289 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 368 (524)
T TIGR02348 289 DIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLA 368 (524)
T ss_pred HHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999987777799999999999999999999999999999999999999999999998776 99999999
Q ss_pred hhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 012693 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (458)
Q Consensus 320 ~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~~i~~~a~AL~~i 399 (458)
||+|+++||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|++|++....++++|+|+++|++||++|
T Consensus 369 ~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~i 448 (524)
T TIGR02348 369 KLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAP 448 (524)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999983334889999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 400 p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|++||+|||+|+.++ ++|++. +.++|||+.+|++.||++.|||||+.||.++|++|+
T Consensus 449 p~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 506 (524)
T TIGR02348 449 LRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAA 506 (524)
T ss_pred HHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHH
Confidence 999999999999999 999875 335999999999999999999999999999999986
No 8
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.3e-95 Score=772.15 Aligned_cols=450 Identities=38% Similarity=0.556 Sum_probs=428.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||+++++ +.+++++|++||+++||||||+++||++||+++.+|++ |+||..|++||++|.+.++++
T Consensus 53 G~tIlk~i~i~hp~~~~g--a~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~ 130 (544)
T PRK12850 53 GVTVAKEIELEDKFENMG--AQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDE 130 (544)
T ss_pred HHHHHHHhcCCChhhhHH--HHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 468999999999997766 66779999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012693 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (458)
Q Consensus 84 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (458)
|+++++|+++.++|.++|++|+++++.+++++++|+.+++++|.|.++.+....+++++++|++|++||.+|||.++.++
T Consensus 131 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~ 210 (544)
T PRK12850 131 LKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEK 210 (544)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCcccccccc
Confidence 99999999888889999999999899999999999999998888888876666678999999999999999999998888
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHH
Q 012693 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (458)
Q Consensus 164 ~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le 243 (458)
++.+++||+|+++|.++++.+++.++++++.++|+||||++++|+++++++|+.|++++.+++++||+|+|+++|+++|+
T Consensus 211 ~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le 290 (544)
T PRK12850 211 MRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLE 290 (544)
T ss_pred CeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012693 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (458)
Q Consensus 244 ~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~eRl~ 319 (458)
|||++|||++++++.+++++++++++||+|++|+++++++++++++++++++..|+++|+++++++.+ ++|+||++
T Consensus 291 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 370 (544)
T PRK12850 291 DIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLA 370 (544)
T ss_pred HHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999987777789999999999999999999999999999999999999999999988766 89999999
Q ss_pred hhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 012693 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (458)
Q Consensus 320 ~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~~i~~~a~AL~~i 399 (458)
||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|..|+++...++++|+|+++|++||+.|
T Consensus 371 ~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 450 (544)
T PRK12850 371 KLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEP 450 (544)
T ss_pred HhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998444899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 400 p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|++||+|||+|+.++ .+|++.. .++|||+.+|+++||++.|||||+.||.++|++|+
T Consensus 451 p~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 508 (544)
T PRK12850 451 LRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAA 508 (544)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHHHHHHHH
Confidence 999999999999999 9998753 57999999999999999999999999999999986
No 9
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=5.2e-95 Score=772.10 Aligned_cols=449 Identities=35% Similarity=0.522 Sum_probs=428.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||+++++ +.+++++|.+|++|+||||||+++||++||+++.+|++ |+||+.|++||++|.+.+++.
T Consensus 52 G~tIlk~i~~~hp~a~~g--~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~ 129 (529)
T CHL00093 52 GVTIAKEIELEDHIENTG--VALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQ 129 (529)
T ss_pred HHHHHHHccCcCHHHHHH--HHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999988 88899999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012693 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (458)
Q Consensus 84 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (458)
|+++++|+++.++|.++|++|+++++.+++++++|+.+++++|.|.++.|++..+++++++|++|++||.+|||.+++++
T Consensus 130 L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~ 209 (529)
T CHL00093 130 IAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTER 209 (529)
T ss_pred HHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCcc
Confidence 99999999888899999999999999999999999999998888888887777778999999999999999999999999
Q ss_pred ceeeecCceEEEeccccCCH-HHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhH
Q 012693 164 KECVLDGALVLIYDTKISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM 242 (458)
Q Consensus 164 ~~~~~~~~~Il~~d~~i~~~-~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~l 242 (458)
|..+++||+|+++|++|+.. .+++++++.+.++|+|++|++++|+++++++++.|+.++.++|++||+|++++++++++
T Consensus 210 ~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l 289 (529)
T CHL00093 210 MEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAML 289 (529)
T ss_pred ceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHH
Confidence 99999999999999999987 78999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHH
Q 012693 243 EDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (458)
Q Consensus 243 e~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~eRl 318 (458)
+|||++|||++++++.+.+++++++++||+|++|+++++++++++ .++++.+..|+..++++++.+++ ++|+||+
T Consensus 290 ~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~ 368 (529)
T CHL00093 290 EDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERL 368 (529)
T ss_pred HHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 999999999999988887899999999999999999999999998 67789999999999999988776 9999999
Q ss_pred hhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcC--CChhHHHHHHHHHHHH
Q 012693 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT--TNSDQKIGVQIVQNAL 396 (458)
Q Consensus 319 ~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~--~~~~e~~~i~~~a~AL 396 (458)
+||+|+.+||+|||+|+++++|++|+++||+|++|+++++|+|||||++|+++|++|++++. .++++|+|+++|++||
T Consensus 369 ~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL 448 (529)
T CHL00093 369 AKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAI 448 (529)
T ss_pred HHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865 4899999999999999
Q ss_pred HHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 397 KMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 397 ~~ip~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+.||++||+|||+|+.++ .++++. +.++|||+.+|+++||++.|||||+.||.++|++|+
T Consensus 449 ~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (529)
T CHL00093 449 LAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAA 509 (529)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHH
Confidence 999999999999999999 999764 458999999999999999999999999999999986
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2e-94 Score=768.39 Aligned_cols=450 Identities=40% Similarity=0.581 Sum_probs=427.1
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||.+.+. +.+++++|++||+|+||||||+++||++||+++.+|++ |+||..|++||++|.+.++++
T Consensus 53 G~tIlk~i~~~hp~~~~~--akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~ 130 (541)
T PRK12851 53 GVTIAKEIELEDKFENMG--AQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEE 130 (541)
T ss_pred HHHHHHHccCCCchhhHH--HHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999955433 44568999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012693 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (458)
Q Consensus 84 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (458)
|+++++|+++.+++.++|++|+++++.+++++++|+.+++.++.|.++.+....+++++++|++|++||.+|||.++.++
T Consensus 131 L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 210 (541)
T PRK12851 131 LKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADK 210 (541)
T ss_pred HHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCC
Confidence 99999999888889999999998899999999999999998888888876666678999999999999999999999889
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHH
Q 012693 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (458)
Q Consensus 164 ~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le 243 (458)
|+.++++|+|+++|.++++.+++.++++.+.++|+||||++++|+++|+++|+.|+++|.+++++||+|+|+++++++|+
T Consensus 211 ~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~ 290 (541)
T PRK12851 211 MEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLE 290 (541)
T ss_pred CeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012693 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (458)
Q Consensus 244 ~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~eRl~ 319 (458)
|||++|||++++++.+++++++++++||+|++|++.+++|+|+++++++++++.|+++|+++++.+.+ ++|+||++
T Consensus 291 ~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~ 370 (541)
T PRK12851 291 DIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLA 370 (541)
T ss_pred HHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999987777789999999999999999999999999999999999999999999988765 99999999
Q ss_pred hhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 012693 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (458)
Q Consensus 320 ~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~~i~~~a~AL~~i 399 (458)
||+|+++||+|||+|+++++|+||+++||+|++|+++++|||||||++|+++|+.|++++..++++|+|+++|++||+.|
T Consensus 371 ~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~i 450 (541)
T PRK12851 371 KLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAP 450 (541)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998766889999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 400 p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|++||+|||+|+.++ .+|++.. .++|||+.+|+++||++.|||||+.||.++|++|+
T Consensus 451 p~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~ 508 (541)
T PRK12851 451 VRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAA 508 (541)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHH
Confidence 999999999999999 9998754 47999999999999999999999999999999986
No 11
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1e-93 Score=767.55 Aligned_cols=450 Identities=32% Similarity=0.509 Sum_probs=425.6
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++.+. +.+++++|++||+++||||||++|||++||+++.++++ |+||..|++||++|.+.+++.
T Consensus 108 G~TIlk~i~~~hP~~~~g--akll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~ 185 (600)
T PLN03167 108 GVTVAKEVELEDPVENIG--AKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKE 185 (600)
T ss_pred HHHHHHHcccCCchhhHH--HHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999975533 45669999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012693 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (458)
Q Consensus 84 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (458)
|+++++|+++ ++|.++|++|+++++.|++++++|+.+++++|.|.+++|++..|++++++|++|++||.||||++++++
T Consensus 186 L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~ 264 (600)
T PLN03167 186 LKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEK 264 (600)
T ss_pred HHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCC
Confidence 9999999975 679999999999999999999999999998889999999999887899999999999999999999999
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHH
Q 012693 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (458)
Q Consensus 164 ~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le 243 (458)
|+.+++||+|+++|++|++++++.++++.+.+.|+|+||++++|++++|++|+.|++++.+++++||+|+||+.++++|+
T Consensus 265 m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~ 344 (600)
T PLN03167 265 MSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLD 344 (600)
T ss_pred CeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012693 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (458)
Q Consensus 244 ~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~eRl~ 319 (458)
|||++|||++++++.++.++++++++||+|++|++.+++++++++.++++.+++|+.+|+..++.+++ ++|++||+
T Consensus 345 dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~ 424 (600)
T PLN03167 345 DIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIA 424 (600)
T ss_pred HHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHh
Confidence 99999999999987777889999999999999999999999999999999999999999999877655 89999999
Q ss_pred hhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcCC-ChhHH-HHHHHHHHHHH
Q 012693 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQK-IGVQIVQNALK 397 (458)
Q Consensus 320 ~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~-~~~e~-~~i~~~a~AL~ 397 (458)
+|+|+.++|+|||+|+.+++|++|+++||+|++|+|+++|+|||||++|+++|++|++++.. ++++| .|++++++||+
T Consensus 425 ~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~ 504 (600)
T PLN03167 425 KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALS 504 (600)
T ss_pred hcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998754 55555 66999999999
Q ss_pred HHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 398 MAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 398 ~ip~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
.|||+||+|||+|+.++ .+|++.+++++|||+.+|++.||++.|||||+.||+++|++|+
T Consensus 505 ~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~ 565 (600)
T PLN03167 505 YPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAA 565 (600)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHH
Confidence 99999999999999999 9998656678999999999999999999999999999999986
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-84 Score=654.60 Aligned_cols=446 Identities=39% Similarity=0.588 Sum_probs=431.3
Q ss_pred HHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHh
Q 012693 7 SLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLD 85 (458)
Q Consensus 7 ~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~L~ 85 (458)
++.+++.+.++...+. +.++++++....+++||||||+++|+++|..++.+-+. |.+|..|.+|+.+|.+.+++.|+
T Consensus 68 Tva~si~l~d~~~n~g--aklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~ 145 (550)
T KOG0356|consen 68 TVAKSIELKDKYENIG--AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELK 145 (550)
T ss_pred eeeccccccchhhhhc--cHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHH
Confidence 5678999999999987 88999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCccccccccce
Q 012693 86 CQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKE 165 (458)
Q Consensus 86 ~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~~~ 165 (458)
++++|+++.+++.+||++|+|+|..+++++.+|++++|++|.|+++.|.+..|++++++||.||+||+||||+++++++.
T Consensus 146 k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~ 225 (550)
T KOG0356|consen 146 KMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQK 225 (550)
T ss_pred HhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHH
Q 012693 166 CVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDL 245 (458)
Q Consensus 166 ~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~l 245 (458)
++|++|++|+++.+|+++++|.|.||...+..+||+|++++|+.++|++|+.|++++.+++++||+|+||+.|++.+.|+
T Consensus 226 ~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Di 305 (550)
T KOG0356|consen 226 VEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDI 305 (550)
T ss_pred hhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCEEecCCCC-CCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHhh
Q 012693 246 AILTGGQVLTGGSG-MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAK 320 (458)
Q Consensus 246 a~~tG~~i~s~~~~-~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s----~~l~eRl~~ 320 (458)
+.+||++++..+.+ ++++++++++||.++++.++.+.+.++.+.+++++++.||++++..++.+.+ ++|+||+++
T Consensus 306 ai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ 385 (550)
T KOG0356|consen 306 AILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAK 385 (550)
T ss_pred HHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 99999999999977 7899999999999999999999999999999999999999999988888766 899999999
Q ss_pred hcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHH
Q 012693 321 LSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMA 399 (458)
Q Consensus 321 l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~i 399 (458)
|+||+++|.|||.|+.|++|++.+++||||++++|+++|+|||||+++++|+..|.++... +.+++.|++++.+||..|
T Consensus 386 ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P 465 (550)
T KOG0356|consen 386 LSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLP 465 (550)
T ss_pred hcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999988764 778999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 400 p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
.++||+|||.|+..+ .+++. ..+|||..+++|+||++.||+||++|.++++..|+
T Consensus 466 ~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~ 521 (550)
T KOG0356|consen 466 AQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAA 521 (550)
T ss_pred HHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhh
Confidence 999999999999999 98884 28999999999999999999999999999999875
No 13
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.3e-77 Score=629.67 Aligned_cols=386 Identities=18% Similarity=0.250 Sum_probs=346.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||+++++ .++|++||+++||||||+++||++||+++.++++ |+||..|++||++|.+.+++.
T Consensus 54 G~tIlk~i~~~hP~a~l~------~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~ 127 (484)
T cd03342 54 GNVLLSEMQIQHPTASMI------ARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKF 127 (484)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 5999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC---CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCc------ceeEe--cCCCccceeEEEeeE
Q 012693 84 LDCQARKIT---TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWEND------LITIF--DRKALYNELNFVKGM 146 (458)
Q Consensus 84 L~~~s~~v~---~~~~l~~va~ts~~~~------~~l~~li~~A~~~v~~~~------~I~i~--~g~~~~d~~~lv~G~ 146 (458)
|++++.+++ +.+.+.++|++|++++ +.|++++++|+.++++++ .|++. .|++. +++++++|+
T Consensus 128 L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~-~ds~~i~G~ 206 (484)
T cd03342 128 LESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSD-SDTKLIRGL 206 (484)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCCh-hhceEEeeE
Confidence 999999987 7788999999999864 789999999999998765 24443 56665 469999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccCCHHH-HHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCcc
Q 012693 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (458)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~~~~-i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~ 225 (458)
+|+++|.+|+|+ .+++||+|+++|+++...+. +...+ -.++||++++|++.++++|..|+
T Consensus 207 ~~~~~~~~~~m~-------~~~~n~~Ill~~~~le~~~~~~~~~~------~~~lvi~~~~I~~~al~~l~~~~------ 267 (484)
T cd03342 207 VLDHGARHPDMP-------KRVENAYILTCNVSLEYEKTEVNSGF------FYSVVINQKGIDPPSLDMLAKEG------ 267 (484)
T ss_pred EEecCCCCCCCC-------ccccCceEEEEeCCCCCCccccCcEE------EEEEEEeCCCccHHHHHHHHHCC------
Confidence 999999999883 36789999999999876643 22111 13699999999999999998873
Q ss_pred EEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHH
Q 012693 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQL 302 (458)
Q Consensus 226 i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v---~i~~~~~~~~~~~~~~~~i~~r~~~l 302 (458)
|++|++ .++++|+|||++|||+++++ ++++++++||+|++| ++++++|+++++++++
T Consensus 268 I~av~~-----~~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------- 327 (484)
T cd03342 268 ILALRR-----AKRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP---------- 327 (484)
T ss_pred CeEEEe-----CCHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEEEEECCCCC----------
Confidence 789996 45678999999999999996 888999999999999 5788899999998765
Q ss_pred HHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC-CcCChhHHHHHHHHHHHhhcCC
Q 012693 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (458)
Q Consensus 303 ~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~ 381 (458)
+.|||+|||+|+.+++|.||+++||++++|+++++| +|||||++|+++|.+|++++..
T Consensus 328 ---------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~ 386 (484)
T cd03342 328 ---------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKS 386 (484)
T ss_pred ---------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhc
Confidence 359999999999999999999999999999999999 9999999999999999999765
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCCccccccHHHHHHhh
Q 012693 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKA 456 (458)
Q Consensus 382 -~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A 456 (458)
++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|+++||++.|||||+.||+++|++|
T Consensus 387 ~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 466 (484)
T cd03342 387 VKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSA 466 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHH
Confidence 889999999999999999999999999999999 989752 456799999999999999999999999999999999
Q ss_pred h
Q 012693 457 T 457 (458)
Q Consensus 457 ~ 457 (458)
+
T Consensus 467 ~ 467 (484)
T cd03342 467 T 467 (484)
T ss_pred H
Confidence 6
No 14
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.6e-76 Score=628.68 Aligned_cols=392 Identities=19% Similarity=0.279 Sum_probs=355.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||..|++||++|.+.+++.
T Consensus 57 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03343 57 GATILKEMDIEHPAAKML------VEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALEL 130 (517)
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 468999999999999976 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCcc---------eeE--ecCCCccceeEEEe
Q 012693 84 LDCQARKIT--TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWENDL---------ITI--FDRKALYNELNFVK 144 (458)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~ts~~~~------~~l~~li~~A~~~v~~~~~---------I~i--~~g~~~~d~~~lv~ 144 (458)
|+++++|++ +.+.|.++|++|++++ +.+++++++|+.+++.++. |+| ..|++.. ++++++
T Consensus 131 L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~-ds~lv~ 209 (517)
T cd03343 131 LDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVD-DTELIR 209 (517)
T ss_pred HHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHH-Hcceee
Confidence 999999986 6788999999999864 7899999999999976543 777 4788776 699999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHHHHH-----------hHHHhcCCcE
Q 012693 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQAS-----------LPCMMQGQSL 200 (458)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~-------------i~~~~~i~~~l-----------~~i~~~~~~l 200 (458)
|++|+++|.+|+|+ ..++||+|++++++ +++++++.+++ +.+.+.|.||
T Consensus 210 G~v~~~~~~~~~m~-------~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 282 (517)
T cd03343 210 GIVIDKEVVHPGMP-------KRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANV 282 (517)
T ss_pred eEEEeccCCCCCCc-------cccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999874 36799999999987 57777776654 4888999999
Q ss_pred EEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEe-
Q 012693 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT- 279 (458)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~- 279 (458)
||++++|+++++++|..+ ++++|++ +++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 283 vi~~~~I~~~al~~l~~~------gI~~v~~-----v~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 346 (517)
T cd03343 283 VFCQKGIDDLAQHYLAKA------GILAVRR-----VKKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERK 346 (517)
T ss_pred EEeCCCccHHHHHHHhHC------CcEEEEe-----CCHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEE
Confidence 999999999999988743 4678884 56788999999999999996 788888899999999864
Q ss_pred --cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012693 280 --MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (458)
Q Consensus 280 --~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~ 357 (458)
+++|++|+++++++ .+||+|||+|+.+++|.+|+++||+|++|++++
T Consensus 347 ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 347 VGDDKMVFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred ECCeEEEEEEcCCCCc-------------------------------eEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999987754 489999999999999999999999999999999
Q ss_pred cC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCC
Q 012693 358 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR 431 (458)
Q Consensus 358 ~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~ 431 (458)
+| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~ 475 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYT 475 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCC
Confidence 99 9999999999999999998664 899999999999999999999999999999999 98974 345689999999
Q ss_pred CccccccccCCccccccHHHHHHhhh
Q 012693 432 GNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 432 ~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|++.||++.|||||+.||+++|++|+
T Consensus 476 g~~~d~~~~gI~dp~~vk~~~l~~A~ 501 (517)
T cd03343 476 GEVVDMLEKGVIEPLRVKKQAIKSAT 501 (517)
T ss_pred CCccchhhcCceecHHHHHHHHHHHH
Confidence 99999999999999999999999986
No 15
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.8e-76 Score=627.72 Aligned_cols=392 Identities=18% Similarity=0.238 Sum_probs=346.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||+++++ .++|++||+++||||||+++||++||+++.+|++ |+||..|++||++|.+.++++
T Consensus 58 G~TIlk~i~i~hP~a~ll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (531)
T TIGR02347 58 GNVLLNEMQIQHPTASMI------ARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEF 131 (531)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 5999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccccc---CCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCcc------eeE--ecCCCccceeEEEeeE
Q 012693 84 LDCQARKI---TTFEEIAQVGTTAANG------DGEIGELIAKVFEKGWENDL------ITI--FDRKALYNELNFVKGM 146 (458)
Q Consensus 84 L~~~s~~v---~~~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~~~~------I~i--~~g~~~~d~~~lv~G~ 146 (458)
|+++++++ .+.+.|.++|++++++ ++.|++++++|+.++++++. |++ ..|++. +++++++|+
T Consensus 132 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~-~ds~~v~Gi 210 (531)
T TIGR02347 132 LDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSA-TDTTLIRGL 210 (531)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCc-cccEEEeeE
Confidence 99999764 4678899999999865 77899999999999987643 344 245554 579999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccCCH-------------HH-----------HHHHHhHHHhcCC----
Q 012693 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQGQ---- 198 (458)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~~-------------~~-----------i~~~l~~i~~~~~---- 198 (458)
+|+++|.+|+|++ +++||+|+++|++++.. ++ +..+++.+.+.|.
T Consensus 211 v~~~~~~~~~~~~-------~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~ 283 (531)
T TIGR02347 211 VLDHGARHPDMPR-------RVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCG 283 (531)
T ss_pred EEecCcCCCCCce-------eccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999998743 78999999999876432 22 3345666766541
Q ss_pred ---c---EEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCcee
Q 012693 199 ---S---LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 272 (458)
Q Consensus 199 ---~---lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~ 272 (458)
+ +|+++++|++.++++|..+ +|+++++. ++++|+|||++|||+++++ ++++++++||+
T Consensus 284 ~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~rv-----~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~ 347 (531)
T TIGR02347 284 KSPDKGFVVINQKGIDPPSLDLLAKE------GIMALRRA-----KRRNMERLTLACGGEALNS-----VEDLTPECLGW 347 (531)
T ss_pred cCCCccEEEEeCCCccHHHHHHHHHC------CceEEccC-----CHHHHHHHHHHhCCEEecc-----cccCCcccccc
Confidence 3 7888999999999988874 57899853 4568999999999999986 88899999999
Q ss_pred eeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHH
Q 012693 273 CKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNAL 349 (458)
Q Consensus 273 ~~~v---~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl 349 (458)
|+.| ++++++|++|+++++++ +|||+|||+|+.+++|++|+++||+
T Consensus 348 ~~~v~~~~ig~~~~~~i~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~er~l~DAl 396 (531)
T TIGR02347 348 AGLVYETSIGEEKYTFIEEVKNPK-------------------------------SCTILIKGPNDHTIKQIKDAVRDGL 396 (531)
T ss_pred ceEEEEEEECCeEEEEEEcCCCCC-------------------------------eEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999 67888999999987653 5899999999999999999999999
Q ss_pred HHHHHHHhcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCC
Q 012693 350 HAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSS 423 (458)
Q Consensus 350 ~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~ 423 (458)
|++|+++++| +|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.
T Consensus 397 ~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~ 476 (531)
T TIGR02347 397 RAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGE 476 (531)
T ss_pred HHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCC
Confidence 9999999998 9999999999999999999765 899999999999999999999999999999999 98875 2345
Q ss_pred CeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 424 DLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 424 ~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
++|||+.+|++.||++.|||||+.||+++|++|+
T Consensus 477 ~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~ 510 (531)
T TIGR02347 477 VVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSAT 510 (531)
T ss_pred ceeeeccCCCccchhhccCEEcHHHHHHHHHHHH
Confidence 7999999999999999999999999999999997
No 16
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-78 Score=634.64 Aligned_cols=423 Identities=31% Similarity=0.441 Sum_probs=364.8
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012693 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (458)
Q Consensus 6 ~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~L 84 (458)
.+|||+|++.||.||++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|.+.++++|
T Consensus 54 ~tIlkeielehp~akll------~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l 127 (524)
T COG0459 54 VTILKEIELEHPGAKLL------VEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEEL 127 (524)
T ss_pred ceehhhhhccCchhHHH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999977 7999999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCCHH-----HHHHHHHHhcCCChhHHHHHHHHHHhhcc-----CcceeEecCCCccceeEEEeeEEEeccccC
Q 012693 85 DCQARKITTFE-----EIAQVGTTAANGDGEIGELIAKVFEKGWE-----NDLITIFDRKALYNELNFVKGMKLEWGLKS 154 (458)
Q Consensus 85 ~~~s~~v~~~~-----~l~~va~ts~~~~~~l~~li~~A~~~v~~-----~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~ 154 (458)
+++++|+++.+ ....+++.++++++.+++++++|+.+++. ++.+.++..++..+++++++||+||+||.+
T Consensus 128 ~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s 207 (524)
T COG0459 128 KEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLS 207 (524)
T ss_pred HHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccC
Confidence 99999998654 44445555556578999999999999998 777778877777778999999999999999
Q ss_pred CccccccccceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCC
Q 012693 155 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 234 (458)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~ 234 (458)
|||.++ .+++||+|+++|++|+..+..+| ++.....+.||++++++..+++|..++.|.+++..++++|+.|+|
T Consensus 208 ~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi 281 (524)
T COG0459 208 PYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI 281 (524)
T ss_pred CCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 999754 47889999999999998888888 777777778888888888888888899888888888889999999
Q ss_pred ccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhc-ch--
Q 012693 235 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLS-TS-- 311 (458)
Q Consensus 235 ~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~-~s-- 311 (458)
++.++..|+|++++||+++.+++.+ .....+|.|..|.+.++.+....|.+. ..++++. .+
T Consensus 282 ~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~ 345 (524)
T COG0459 282 DDLAKAYLEDIAILTGRRVKKEDLG-----ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDY 345 (524)
T ss_pred cHHHHHHHHhhcceecceecchhhH-----HHHHHccCceEEeecccCceeecCccc-----------cceEEEeeccch
Confidence 9888888888888888887776422 144556777777766666555554320 1112222 11
Q ss_pred --HHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC-CcCChhHHHHHHHHHHHhhc-CCCh-hHH
Q 012693 312 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQ-TTNS-DQK 386 (458)
Q Consensus 312 --~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~-~~~~-~e~ 386 (458)
+++++|.++ .+++|||+|||+|+.+++|++|++|||||++|+++++| +|||||++|++++++|++|+ ..++ ++|
T Consensus 346 ~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~ 424 (524)
T COG0459 346 DMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQ 424 (524)
T ss_pred hhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHH
Confidence 677888888 89999999999999999999999999999999999999 99999999999999999983 3355 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCC-CCeeEeCCCCcc-ccccccCCccccccHHHHHHhhh
Q 012693 387 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDS-SDLGYNPARGNY-VDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 387 ~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~~~-~~~G~d~~~~~~-~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+|+++|++||+.||++||+|||+||.++ .+|++... +++|||+.+|++ .||++.|||||+.||+++|++|+
T Consensus 425 ~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~ 498 (524)
T COG0459 425 LGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAA 498 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99998654 459999999999 78999999999999999999986
No 17
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=6.4e-76 Score=626.57 Aligned_cols=392 Identities=19% Similarity=0.265 Sum_probs=353.5
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+++|+++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02339 58 GATILKEMDIEHPAAKML------VEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEI 131 (519)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC--HHHHHHHHHHhcCCC-------hhHHHHHHHHHHhhcc---Ccc-------eeE--ecCCCccceeEE
Q 012693 84 LDCQARKITT--FEEIAQVGTTAANGD-------GEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (458)
Q Consensus 84 L~~~s~~v~~--~~~l~~va~ts~~~~-------~~l~~li~~A~~~v~~---~~~-------I~i--~~g~~~~d~~~l 142 (458)
|+++++|++. .+.|.++|+|+++++ +.|++++++|+.++++ +|. |++ ..|++.. ++++
T Consensus 132 L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~-ds~l 210 (519)
T TIGR02339 132 IDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSID-DTEL 210 (519)
T ss_pred HHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChh-ccee
Confidence 9999999863 578999999999754 7899999999999974 453 445 4787776 6999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHHHHHh-----------HHHhcCC
Q 012693 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQ 198 (458)
Q Consensus 143 v~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~-------------i~~~~~i~~~l~-----------~i~~~~~ 198 (458)
++|++|+++|.+|.| +..++||+|++++++ +++++++.++++ .+++.|.
T Consensus 211 v~G~vi~~~~~~~~m-------~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~ 283 (519)
T TIGR02339 211 VEGIVVDKEPVHPGM-------PKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGA 283 (519)
T ss_pred EeeEEEecCCCCCCC-------ccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999865 347899999999987 678888877766 7899999
Q ss_pred cEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE
Q 012693 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA 278 (458)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i 278 (458)
|||+++++|+++++++|..+ ++++|++ +++++|+|||++|||+++++ ++++++++||+|++|++
T Consensus 284 ~lvi~~~~I~~~al~~L~~~------gI~~v~~-----v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~ 347 (519)
T TIGR02339 284 NVVFCQKGIDDLAQHYLAKA------GILAVRR-----VKKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEE 347 (519)
T ss_pred cEEEECCCccHHHHHHHHHC------CCEEEec-----CCHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEE
Confidence 99999999999999988743 4678874 56788999999999999996 78888889999999986
Q ss_pred e---cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHH
Q 012693 279 T---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (458)
Q Consensus 279 ~---~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a 355 (458)
. +++|++|++++++. .+||+|||+|+.+++|.+|+++||+|++|++
T Consensus 348 ~~ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 348 RKVGDDKMTFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred EEECCeEEEEEEcCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5 48899999987654 4899999999999999999999999999999
Q ss_pred HhcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeC
Q 012693 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNP 429 (458)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~ 429 (458)
+++| +|||||++|+++|+.|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~ 476 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINV 476 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEc
Confidence 9999 9999999999999999998764 889999999999999999999999999999999 98974 3456899999
Q ss_pred CCCccccccccCCccccccHHHHHHhhh
Q 012693 430 ARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 430 ~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
.+|++.||++.|||||+.||+++|+.|+
T Consensus 477 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~ 504 (519)
T TIGR02339 477 FTGEIEDMLELGVIEPLRVKEQAIKSAT 504 (519)
T ss_pred CCCCccchhhccceEcHHHHHHHHHHHH
Confidence 9999999999999999999999999986
No 18
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-75 Score=622.58 Aligned_cols=397 Identities=17% Similarity=0.217 Sum_probs=349.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.+|++ |+||+.|++||++|.+.+++.
T Consensus 50 G~tIlk~i~~~hP~akll------~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (527)
T cd03335 50 GATILKLLEVEHPAAKIL------VELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKY 123 (527)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999976 7999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhc-cccccC--CHHHHHHHHHHhcC-----C-ChhHHHHHHHHHHhhc---cCcc-------eeE--ecCCCccceeEE
Q 012693 84 LDC-QARKIT--TFEEIAQVGTTAAN-----G-DGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (458)
Q Consensus 84 L~~-~s~~v~--~~~~l~~va~ts~~-----~-~~~l~~li~~A~~~v~---~~~~-------I~i--~~g~~~~d~~~l 142 (458)
|++ +++|++ +.+.|.++|+|+++ + ++.|++++++|+.+++ .+|. |++ ..|++.. ++++
T Consensus 124 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~-~s~l 202 (527)
T cd03335 124 IKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAK-ESYL 202 (527)
T ss_pred HHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChh-hcce
Confidence 996 899987 67889999999987 2 4789999999999985 2232 333 3677776 6999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCC-------------HHH-----------HHHHHhHHHhcCC
Q 012693 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNV-----------IRQASLPCMMQGQ 198 (458)
Q Consensus 143 v~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~-------------~~~-----------i~~~l~~i~~~~~ 198 (458)
++|++|+++|.+|.| +..++||+|+++++++.. +++ +.++++.+.+.|+
T Consensus 203 i~Givi~~~~~~~~m-------~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~ 275 (527)
T cd03335 203 VNGYALNCTRASQGM-------PTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGA 275 (527)
T ss_pred eeeEEEecccCCCCC-------cccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999865 347899999999987643 222 3366788889999
Q ss_pred cEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCC-CccCCCCCCceeeeEEE
Q 012693 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (458)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~-~~~~~~~~~LG~~~~v~ 277 (458)
||||++++|+++++++|..+ +++++++ +++++|+|||++|||+++++..++ ..+++++++||+|++|+
T Consensus 276 ~lvi~~k~I~d~al~~L~~~------~I~~v~~-----v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 344 (527)
T cd03335 276 NVVLTTGGIDDMCLKYFVEA------GAMAVRR-----VKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVV 344 (527)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEEe-----CCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEE
Confidence 99999999999999999875 4788884 567889999999999999985443 22445667899999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHH
Q 012693 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (458)
Q Consensus 278 ---i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~ 354 (458)
+++++|++|++++++ +.|||+|||+|+.+++|.+|+++||+|++++
T Consensus 345 ~~~ig~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~ 393 (527)
T cd03335 345 QERIGDDELILIKGTKKR-------------------------------SSASIILRGANDFMLDEMERSLHDALCVVKR 393 (527)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 788899999988754 4699999999999999999999999999999
Q ss_pred HHhcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 012693 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (458)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~---~------- 421 (458)
++++| +|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 394 ~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~ 473 (527)
T cd03335 394 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKK 473 (527)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 99999 9999999999999999998765 889999999999999999999999999999999 988762 2
Q ss_pred -CCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 422 -SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 422 -~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+.++|||+.+|++.||++.|||||+.||.++|+.|+
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~ 510 (527)
T cd03335 474 HLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFAT 510 (527)
T ss_pred cCceEeEECCCCcccchhhccceecHHHHHHHHHHHH
Confidence 357899999999999999999999999999999986
No 19
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-75 Score=620.94 Aligned_cols=398 Identities=18% Similarity=0.239 Sum_probs=347.6
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+++|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 51 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 124 (517)
T TIGR02342 51 GATILKQMGVIHPAAKML------VELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKI 124 (517)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999976 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---Cc-----ceeEe--cCCCccceeEEEee
Q 012693 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---ND-----LITIF--DRKALYNELNFVKG 145 (458)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~---~~-----~I~i~--~g~~~~d~~~lv~G 145 (458)
|+++++|++ +.+.|.++|+||+++ .+.|++++++|+.+++. ++ .|++. .|++. +++++++|
T Consensus 125 L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~-~ds~li~G 203 (517)
T TIGR02342 125 LDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTI-DDTELIEG 203 (517)
T ss_pred HHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCCh-hhcEEEee
Confidence 999999987 678899999999974 34579999999999975 23 24443 45555 56999999
Q ss_pred EEEeccccCC-ccccccccceeeecCceEEEecccc-------------CCH-----------HHHHHHHhHHHhcCCcE
Q 012693 146 MKLEWGLKSP-YFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSL 200 (458)
Q Consensus 146 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~Il~~d~~i-------------~~~-----------~~i~~~l~~i~~~~~~l 200 (458)
++|+++|.++ .|+ ..+.||+|+++++.+ .++ +++.++++.+++.|+||
T Consensus 204 ivl~k~~~~~~~mp-------k~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~l 276 (517)
T TIGR02342 204 LVFTQKASRSAGGP-------TRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNV 276 (517)
T ss_pred EEEeccccccCCCC-------ccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999999883 332 245677777766533 222 35667889999999999
Q ss_pred EEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE-E-
Q 012693 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-A- 278 (458)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~-i- 278 (458)
|+++++|++++++.++.|.+.+ ++|++|++ +++++|+|||++|||+++++ ++++++++||+|+.|+ +
T Consensus 277 vi~~~~I~~~~l~~l~~~~l~~-~~I~av~~-----v~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 345 (517)
T TIGR02342 277 LLIQKSILRDAVNDLALHFLAK-MKIMVVKD-----IEREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVT 345 (517)
T ss_pred EEECCCcccccccHHHHHHHhh-CCceEEec-----CCHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEE
Confidence 9999999888888888877776 78999994 56788999999999999996 7888899999999997 3
Q ss_pred -ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012693 279 -TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (458)
Q Consensus 279 -~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~ 357 (458)
+++.++++.+++.+ ++.|||+|||+|+.+++|+||+++||++++|++++
T Consensus 346 ~~~~~~~~i~~~~~~------------------------------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~ 395 (517)
T TIGR02342 346 TDGGKIIKITGIQNA------------------------------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVK 395 (517)
T ss_pred ECCeEEEEEEccCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567778877542 35799999999999999999999999999999999
Q ss_pred c-CCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCC
Q 012693 358 E-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR 431 (458)
Q Consensus 358 ~-gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~ 431 (458)
+ ++|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ +++.++|||+.+
T Consensus 396 ~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~ 475 (517)
T TIGR02342 396 KRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRK 475 (517)
T ss_pred CCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCC
Confidence 8 59999999999999999998765 889999999999999999999999999999999 99876 245689999999
Q ss_pred CccccccccCCccccccHHHHHHhhh
Q 012693 432 GNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 432 ~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|+++||++.|||||+.||+++|++|+
T Consensus 476 g~i~d~~~~gI~dp~~vk~~ai~~A~ 501 (517)
T TIGR02342 476 GGITDMLEEEVLQPLLVTTSAVTLAS 501 (517)
T ss_pred CCccchhhccceEcHHHHHHHHHHHH
Confidence 99999999999999999999999997
No 20
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.2e-75 Score=622.20 Aligned_cols=399 Identities=18% Similarity=0.216 Sum_probs=350.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||..|++||++|.+.++++
T Consensus 50 G~tIlk~l~~~hp~a~ll------~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (515)
T cd03338 50 GATILKQMSVLHPAAKML------VELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEI 123 (515)
T ss_pred HHHHHHhCcCcCHHHHHH------HHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCcc----------eeEecCCCccceeEEEee
Q 012693 84 LDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWENDL----------ITIFDRKALYNELNFVKG 145 (458)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~ts~~------~~~~l~~li~~A~~~v~~~~~----------I~i~~g~~~~d~~~lv~G 145 (458)
|++++.|++ +.++|.++|++|++ +++.+++++++|+.++++++. |....|++..| +++++|
T Consensus 124 L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~d-s~lv~G 202 (515)
T cd03338 124 LDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIED-TELVDG 202 (515)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhh-ceeeee
Confidence 999999986 67889999999998 457899999999999987652 44457887765 799999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEecccc-------------CCH-----------HHHHHHHhHHHhcCCcEE
Q 012693 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLL 201 (458)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i-------------~~~-----------~~i~~~l~~i~~~~~~lv 201 (458)
++|+++|.+|++. | ..+.+|+++++++++ +++ +++.++++.+++.|.|||
T Consensus 203 iv~~k~~~~~~~~--p----~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lv 276 (515)
T cd03338 203 LVFTQKASKKAGG--P----TRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVL 276 (515)
T ss_pred EEEeccccCcCCC--C----ccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999997631 1 134555555544322 222 456778999999999999
Q ss_pred EEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEe--
Q 012693 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT-- 279 (458)
Q Consensus 202 ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~-- 279 (458)
|++++|++++++.++.|.+.+ .+|++|+ ++++++|+|||++|||+++++ ++++++++||+|+.|++.
T Consensus 277 i~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 277 LIQKSILRDAVSDLALHFLAK-LKIMVVK-----DIEREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred EECCCcccccccHHHHHHHHH-CCceEEe-----cCCHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEE
Confidence 999999888888777777765 7899998 466788999999999999996 788888899999999853
Q ss_pred -cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012693 280 -MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (458)
Q Consensus 280 -~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~ 358 (458)
+++++++.++..+ ++.|||+|||+|+.+++|++|+++||+|++|+++++
T Consensus 346 g~~~~~~i~~~~~~------------------------------~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 346 GDGKIVKITGVKNP------------------------------GKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred CCeEEEEEEecCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5578888887541 357999999999999999999999999999999999
Q ss_pred C-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 012693 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (458)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~ 432 (458)
| +|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 475 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKG 475 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCC
Confidence 9 9999999999999999998664 889999999999999999999999999999999 999762 456899999999
Q ss_pred ccccccccCCccccccHHHHHHhhh
Q 012693 433 NYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 433 ~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+++||++.|||||+.||+++|++|+
T Consensus 476 ~~~d~~~~gI~dp~~vk~~~l~~A~ 500 (515)
T cd03338 476 AITNILEENVVQPLLVSTSAITLAT 500 (515)
T ss_pred CccchhhcCceecHHHHHHHHHHHH
Confidence 9999999999999999999999986
No 21
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.8e-75 Score=619.81 Aligned_cols=397 Identities=17% Similarity=0.217 Sum_probs=350.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 54 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 127 (536)
T TIGR02340 54 GATILKLLEVEHPAAKIL------VELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKY 127 (536)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999966 7999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcc-ccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhc---cCcc-------eeE--ecCCCccceeEE
Q 012693 84 LDCQ-ARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (458)
Q Consensus 84 L~~~-s~~v~--~~~~l~~va~ts~~------~~~~l~~li~~A~~~v~---~~~~-------I~i--~~g~~~~d~~~l 142 (458)
|+++ ++|++ +.+++.++|+++++ +++.|++++++|+.+++ .+|. |++ ..|++. +++++
T Consensus 128 L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~-~~s~~ 206 (536)
T TIGR02340 128 IKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSA-RESYL 206 (536)
T ss_pred HHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCc-cccEE
Confidence 9975 88887 67889999999987 47889999999999986 2332 344 478777 57999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCCH-------------H-----------HHHHHHhHHHhcCC
Q 012693 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------N-----------VIRQASLPCMMQGQ 198 (458)
Q Consensus 143 v~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~~-------------~-----------~i~~~l~~i~~~~~ 198 (458)
++|++|+++|.+|.| +..++||+|+++++++... + .+.+.++.+.+.|.
T Consensus 207 i~Gi~i~~~~~~~~m-------~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~ 279 (536)
T TIGR02340 207 VKGYALNCTRASQQM-------PKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGA 279 (536)
T ss_pred EEEEEEecccCCCCC-------cceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999855 3478999999999876433 2 23356777888999
Q ss_pred cEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCC-CccCCCCCCceeeeEEE
Q 012693 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (458)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~-~~~~~~~~~LG~~~~v~ 277 (458)
+||+++++|++.++++|..+ +++++++ +++++|+|||++|||+++++..++ ..+++++++||+|+.|+
T Consensus 280 ~lvi~~k~I~~~a~~~L~k~------~I~~i~r-----v~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 280 NVVLTTGGIDDMCLKYFVEA------GAMGVRR-----CKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEec-----CCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 99999999999999988875 4688885 456789999999999999986444 33456777899999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHH
Q 012693 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (458)
Q Consensus 278 ---i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~ 354 (458)
+++++|++|++++++. +|||+|||+|+.+++|++|+++||+|++|+
T Consensus 349 ~~~ig~~~~~~i~~~~~~~-------------------------------~~TIlirG~t~~~l~E~~r~i~DAl~~~~~ 397 (536)
T TIGR02340 349 EERIADDECILIKGTKGRK-------------------------------SASIILRGANDFMLDEMERSLHDALCVVKR 397 (536)
T ss_pred EEEECCeEEEEEEcCCCCC-------------------------------EEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999887653 589999999999999999999999999999
Q ss_pred HHhcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 012693 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (458)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~---~------- 421 (458)
++++| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 398 ~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~ 477 (536)
T TIGR02340 398 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKK 477 (536)
T ss_pred HhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccc
Confidence 99999 9999999999999999998664 889999999999999999999999999999999 888761 1
Q ss_pred -CCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 422 -SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 422 -~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+.++|||+.+|++.||++.|||||+.||.++|+.|+
T Consensus 478 ~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~ 514 (536)
T TIGR02340 478 HLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFAT 514 (536)
T ss_pred cCceEeEEccCCccccchhccceecHHHHHHHHHHHH
Confidence 346999999999999999999999999999999986
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.2e-75 Score=619.60 Aligned_cols=392 Identities=19% Similarity=0.212 Sum_probs=344.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.+|++ |+||+.|++||+.|.+.+++.
T Consensus 65 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 138 (526)
T cd03339 65 GATILEKMDVDHQIAKLL------VELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEH 138 (526)
T ss_pred HHHHHHHhcccCHHHHHH------HHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------cceeEe--cCCCccceeEEEe
Q 012693 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (458)
Q Consensus 84 L~~~s~~v~----~~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~~-------~~I~i~--~g~~~~d~~~lv~ 144 (458)
|+++++|++ +.+.|.++|++|+++ .+.|++++.+|+..+... ..|++. .|++.. ++++++
T Consensus 139 L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-dS~~v~ 217 (526)
T cd03339 139 LEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLE-DTKLVK 217 (526)
T ss_pred HHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHH-Hcceee
Confidence 999999885 467899999999874 357899999999877431 135554 788776 599999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEecc-----------c--cCCHHH-----------HHHHHhHHHhcCCcE
Q 012693 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNV-----------IRQASLPCMMQGQSL 200 (458)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~-----------~--i~~~~~-----------i~~~l~~i~~~~~~l 200 (458)
|++|+++|.+|+|++ .++||+|++++. + ++++++ +.++++.+.+.|+|+
T Consensus 218 Givi~~~~~~~~m~~-------~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 290 (526)
T cd03339 218 GIVIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290 (526)
T ss_pred eEEEecccCCCCCCc-------eecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 999999999999865 345666665553 2 566655 677899999999999
Q ss_pred EEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE--
Q 012693 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (458)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i-- 278 (458)
||++++|+++|+++|..|+ +.+|+++ ++.+|+|||++|||+++++ ++++++++||+|+.|+.
T Consensus 291 vi~~~~I~~~al~~L~~~~------I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ 354 (526)
T cd03339 291 VICQWGFDDEANHLLLQNG------LPAVRWV-----GGVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREIS 354 (526)
T ss_pred EEeCCCCCHHHHHHHHHCC------CEEEEeC-----CHHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEE
Confidence 9999999999999998765 5689874 3456999999999999996 88899999999999873
Q ss_pred -e--cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHH
Q 012693 279 -T--MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (458)
Q Consensus 279 -~--~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a 355 (458)
+ .++++|+++|+++ +.|||+|||+|+.+++|.+|+++||+|++|++
T Consensus 355 ig~~~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~ 403 (526)
T cd03339 355 FGTTKDKMLVIEGCPNS-------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNL 403 (526)
T ss_pred ecCCCcEEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4678999998765 35899999999999999999999999999999
Q ss_pred HhcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----cCCCCeeEe
Q 012693 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE----QDSSDLGYN 428 (458)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~----~~~~~~G~d 428 (458)
+++| +|||||++|+++|+.|++++.. ++++|+++++|++||++||++||+|||+|+.++ .+|++ .++.++|||
T Consensus 404 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 483 (526)
T cd03339 404 IRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGID 483 (526)
T ss_pred hhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeee
Confidence 9998 9999999999999999998764 889999999999999999999999999999999 98874 235579999
Q ss_pred CCCCccccccccCCccccccHHHHHHhhh
Q 012693 429 PARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 429 ~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+.+|++.||++.|||||+.||+++|+.|+
T Consensus 484 ~~~g~~~d~~~~gV~dp~~vk~~~l~~A~ 512 (526)
T cd03339 484 CLGRGTNDMKEQKVFETLISKKQQILLAT 512 (526)
T ss_pred cCCCccCchhhcCceecHHHHHHHHHHHH
Confidence 99999999999999999999999999997
No 23
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-74 Score=616.07 Aligned_cols=395 Identities=16% Similarity=0.179 Sum_probs=353.0
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+|+|+++||+++.++++ |+||+.|++||++|.+.+++.
T Consensus 58 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (522)
T cd03340 58 GATILKLLDIVHPAAKTL------VDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEK 131 (522)
T ss_pred HHHHHHHccccCHHHHHH------HHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC------HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCc---ceeEe--cCCCccceeEEEeeE
Q 012693 84 LDCQARKITT------FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITIF--DRKALYNELNFVKGM 146 (458)
Q Consensus 84 L~~~s~~v~~------~~~l~~va~ts~~------~~~~l~~li~~A~~~v~~~~---~I~i~--~g~~~~d~~~lv~G~ 146 (458)
|+++++|+++ .+.|.++|+++++ +++.|++++++|+.++++++ .|++. .|++.. ++++++|+
T Consensus 132 L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~-ds~lv~Gi 210 (522)
T cd03340 132 IKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE-DSQLVNGV 210 (522)
T ss_pred HHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChh-hceeeeeE
Confidence 9999998864 4569999999876 46789999999999998765 45444 677765 58999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHH-----------HHHHHhHHHhcCCcEEE
Q 012693 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSLLV 202 (458)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~-------------i~~~~~-----------i~~~l~~i~~~~~~lvi 202 (458)
+|+++|.+|+|.+.|+ .++||+|++++++ ++++.+ +.+.++.+.+.|.++|+
T Consensus 211 v~~k~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl 286 (522)
T cd03340 211 AFKKTFSYAGFEQQPK----KFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVL 286 (522)
T ss_pred EEecccCccccccCCc----cccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999998865443 6899999999986 345443 55667888899999999
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Ee
Q 012693 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (458)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (458)
++++|++.++++|..+ +|+++++ +++++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 287 ~~~~i~d~a~~~l~~~------~I~~~~~-----v~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 287 SKLPIGDLATQYFADR------DIFCAGR-----VPEEDLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred eCCCCcHHHHHHHHHC------CcEEEEe-----CCHHHHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEEC
Confidence 9999999999988875 4678775 45678999999999999996 7889999999999997 67
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 012693 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g 359 (458)
++++++|.+|..++ .+||++||+|+.+++|.+|+++||++++|+++++|
T Consensus 351 ~~~~~~~~~~~~~~-------------------------------~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 399 (522)
T cd03340 351 GERYNIFTGCPKAK-------------------------------TCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKND 399 (522)
T ss_pred CEEEEEEECCCCCc-------------------------------eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88899999987543 48999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC-CCeeEeCCCC
Q 012693 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS-SDLGYNPARG 432 (458)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~---~~-~~~G~d~~~~ 432 (458)
+|||||++|++++.+|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++ .++|||+.+|
T Consensus 400 ~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 479 (522)
T cd03340 400 SVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNE 479 (522)
T ss_pred CEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCC
Confidence 9999999999999999998764 899999999999999999999999999999999 999762 34 5799999999
Q ss_pred ccccccccCCccccccHHHHHHhhh
Q 012693 433 NYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 433 ~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
++.||++.|||||+.||+++|+.|+
T Consensus 480 ~i~d~~~~gV~dp~~vk~~~i~~A~ 504 (522)
T cd03340 480 GIADNFEAFVWEPSLVKINALTAAT 504 (522)
T ss_pred cccchhhcCceEcHHHHHHHHHHHH
Confidence 9999999999999999999999987
No 24
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-74 Score=616.67 Aligned_cols=392 Identities=19% Similarity=0.210 Sum_probs=343.8
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 69 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 142 (532)
T TIGR02343 69 GATILSQMDVDNPIAKLM------VELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEH 142 (532)
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc-C------cceeEe--cCCCccceeEEEe
Q 012693 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE-N------DLITIF--DRKALYNELNFVK 144 (458)
Q Consensus 84 L~~~s~~v~----~~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~-~------~~I~i~--~g~~~~d~~~lv~ 144 (458)
|+++++|++ +.+.|.++|++++++ .+.|++++++|+..+.. + ..|++. .|++..| +++++
T Consensus 143 L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~d-s~~v~ 221 (532)
T TIGR02343 143 LEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLED-TKLIK 221 (532)
T ss_pred HHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCccc-ceeEe
Confidence 999999875 257899999998874 34688889999987743 1 135554 7888765 79999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEecc-----------c--cCCHHHH-----------HHHHhHHHhcCCcE
Q 012693 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNVI-----------RQASLPCMMQGQSL 200 (458)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~-----------~--i~~~~~i-----------~~~l~~i~~~~~~l 200 (458)
|++|+++|.+|+|++ .+++|+|+++++ + +++++++ .++++.+.+.|+||
T Consensus 222 Gi~i~~~~~~~~m~~-------~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~l 294 (532)
T TIGR02343 222 GIIIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANI 294 (532)
T ss_pred eEEEecCcCCCCCCe-------eecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 999999999999865 345666666553 3 5667665 77899999999999
Q ss_pred EEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---
Q 012693 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI--- 277 (458)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~--- 277 (458)
||++++|++.++++|..|+ +.+||+++ +.+|+|||++|||+++++ ++++++++||+|++|+
T Consensus 295 vi~~~~I~~~al~~L~~~~------i~~v~~~~-----~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ 358 (532)
T TIGR02343 295 VICQWGFDDEANHLLLQND------LPAVRWVG-----GHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREIS 358 (532)
T ss_pred EEeCCCccHHHHHHHHHCC------cEEEEcCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEE
Confidence 9999999999999999874 56888653 456999999999999996 8889999999999987
Q ss_pred Eec--ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHH
Q 012693 278 ATM--DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (458)
Q Consensus 278 i~~--~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a 355 (458)
++. ++++++++|++++ +|||+|||+|+.+++|+||+++||++++|++
T Consensus 359 ig~~~~~~~~i~~~~~~~-------------------------------~~TIllrG~t~~~l~E~er~l~DAl~~v~~~ 407 (532)
T TIGR02343 359 FGTTKDRMLVIEQCKNSK-------------------------------AVTIFIRGGNKMIIEEAKRSIHDALCVVRNL 407 (532)
T ss_pred ecCCcceEEEEECCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 4789999987754 5899999999999999999999999999999
Q ss_pred Hhc-CCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----cCCCCeeEe
Q 012693 356 KEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE----QDSSDLGYN 428 (458)
Q Consensus 356 ~~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~----~~~~~~G~d 428 (458)
+++ ++|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||
T Consensus 408 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 487 (532)
T TIGR02343 408 IKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVD 487 (532)
T ss_pred HhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCee
Confidence 998 59999999999999999998765 889999999999999999999999999999999 88875 125679999
Q ss_pred CCCCccccccccCCccccccHHHHHHhhh
Q 012693 429 PARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 429 ~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+.+|+++||++.|||||+.||+++|+.|+
T Consensus 488 ~~~g~i~d~~~~gV~Dp~~vk~~al~~A~ 516 (532)
T TIGR02343 488 CLGDGTNDMKEQGVFETLIGKKQQIQLAT 516 (532)
T ss_pred CCCCccccchhccCeecHHHHHHHHHHHH
Confidence 99999999999999999999999999997
No 25
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-74 Score=614.66 Aligned_cols=392 Identities=13% Similarity=0.154 Sum_probs=346.8
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+||++|++.||++|++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 58 G~tIl~~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (525)
T TIGR02344 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSV 131 (525)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999976 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCc-----------ceeEe--cCCCccceeEE
Q 012693 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND-----------LITIF--DRKALYNELNF 142 (458)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~~~-----------~I~i~--~g~~~~d~~~l 142 (458)
|+++++|++ +.+.|.++|+++.++ ++.|++++++|+..+++++ .|+++ +|+++.| +++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~d-S~l 210 (525)
T TIGR02344 132 LEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIED-SCV 210 (525)
T ss_pred HHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHh-cCc
Confidence 999999986 567799999877553 5789999999999997643 14565 5888865 999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCC-------------HHHHHHHHh-----------HHHhcCC
Q 012693 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNVIRQASL-----------PCMMQGQ 198 (458)
Q Consensus 143 v~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~-------------~~~i~~~l~-----------~i~~~~~ 198 (458)
++|+.|++++.++.| +..++||+|+++++++.. ++++.++++ ++.+.|.
T Consensus 211 v~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~ 283 (525)
T TIGR02344 211 LKGVMINKDVTHPKM-------RRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKP 283 (525)
T ss_pred ccceEEecccCCCCC-------ccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999877754 347899999999987643 466666544 7778887
Q ss_pred cEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCcee-eeEEE
Q 012693 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI 277 (458)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~-~~~v~ 277 (458)
++|++++.+++.+++.|..+ +|++++ ++++++|+|||++|||+++++ ++++++++||+ |+.|+
T Consensus 284 ~vIi~~k~I~dla~~~l~~~------~I~av~-----~v~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~ 347 (525)
T TIGR02344 284 DLVITEKGVSDLAQHYLLKA------NISAIR-----RVRKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFE 347 (525)
T ss_pred CEEEeCCCccHHHHHHHhHC------CceEEe-----cCCHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEE
Confidence 78888899999999877753 578887 467788999999999999996 78888899999 99887
Q ss_pred E---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHH
Q 012693 278 A---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (458)
Q Consensus 278 i---~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~ 354 (458)
+ +++++++|++|++++ .|||+|||+|+.+++|.||+++||++++++
T Consensus 348 ~~~ig~~~~~~~~g~~~~~-------------------------------~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 348 VKKIGDEYFTFFTECKDPK-------------------------------ACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred EEEECCeEEEEEEcCCCCC-------------------------------EEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 668899999987654 589999999999999999999999999999
Q ss_pred HHhc-CCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCeeE
Q 012693 355 AKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGY 427 (458)
Q Consensus 355 a~~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~---~-~~~~G~ 427 (458)
++++ ++|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++||
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 476 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeE
Confidence 9988 59999999999999999998665 889999999999999999999999999999999 999762 3 467999
Q ss_pred eCCCCccccccccCCccccccHHHHHHhhh
Q 012693 428 NPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 428 d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
|+.+|++.||++.|||||+.||+++|++|+
T Consensus 477 d~~~g~~~d~~~~gV~dp~~vk~~~l~~A~ 506 (525)
T TIGR02344 477 DGETGKIVDMKEKGIWEPLAVKLQTYKTAI 506 (525)
T ss_pred ECCCCccccchhccceecHHHHHHHHHHHH
Confidence 999999999999999999999999999986
No 26
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.4e-74 Score=612.20 Aligned_cols=395 Identities=15% Similarity=0.154 Sum_probs=349.0
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 59 G~TIlk~i~~~hP~a~ll------~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 132 (522)
T TIGR02345 59 GATILKLLDIVHPAAKTL------VDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEK 132 (522)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999976 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCc----ceeEe--cCCCccceeEEEeeE
Q 012693 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND----LITIF--DRKALYNELNFVKGM 146 (458)
Q Consensus 84 L~~~s~~v~-----~~~~l~~va~ts~~------~~~~l~~li~~A~~~v~~~~----~I~i~--~g~~~~d~~~lv~G~ 146 (458)
|+++++|++ +.+.|.++|+++++ +++.|++++++|+.++++++ .|.+. .|++..| +++++|+
T Consensus 133 L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~d-s~~v~Gi 211 (522)
T TIGR02345 133 LKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQD-SVLVNGV 211 (522)
T ss_pred HHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHh-cceecce
Confidence 999999987 44789999999977 47889999999999998642 23332 6777765 7899999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccC-------------CHHH-----------HHHHHhHHHhcCCcEEE
Q 012693 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPCMMQGQSLLV 202 (458)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~-------------~~~~-----------i~~~l~~i~~~~~~lvi 202 (458)
+|+++|.+|||.+.| ..++||+|+++|++++ ++++ +...++.+.+.|.++++
T Consensus 212 v~~~~~~~~~~~~~~----~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~ 287 (522)
T TIGR02345 212 AFKKTFSYAGFEQQP----KKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVL 287 (522)
T ss_pred EEecccCccccccCC----ceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 999999999986644 4689999999998653 3333 23456667788999999
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE---e
Q 012693 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---T 279 (458)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i---~ 279 (458)
++++|++.++++|..+ +|+++++ ...++++++|++|||+++++ ++++++++||+|+.|+. +
T Consensus 288 ~~~~i~d~~~~~L~~~------~I~~~~~-----v~~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~ 351 (522)
T TIGR02345 288 SKLPIGDLATQYFADH------NIFCAGR-----VSDEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIG 351 (522)
T ss_pred eCCCccHHHHHHHHHC------CcEEEec-----CCHHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEEC
Confidence 9999999999988864 4678875 44567999999999999997 78888899999999874 5
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhc-
Q 012693 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~- 358 (458)
++++++|.|+++++ .|||+|||+|+.+++|++|+++||+|++|+++++
T Consensus 352 ~~r~~~~~g~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 400 (522)
T TIGR02345 352 SERYNYFTGCPHAK-------------------------------TCTIILRGGAEQFIEEAERSLHDAIMIVRRALKAR 400 (522)
T ss_pred CeEEEEEEcCCCCc-------------------------------eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67899999886543 5899999999999999999999999999999998
Q ss_pred CCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 012693 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGN 433 (458)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~ 433 (458)
|+|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|+
T Consensus 401 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~ 480 (522)
T TIGR02345 401 KIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTED 480 (522)
T ss_pred CEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCc
Confidence 69999999999999999998664 889999999999999999999999999999999 999762 4557999999999
Q ss_pred cccccccCCccccccHHHHHHhhh
Q 012693 434 YVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 434 ~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+.||++.|||||+.||+++|++|+
T Consensus 481 i~d~~~~gI~dp~~vk~~~l~~A~ 504 (522)
T TIGR02345 481 IGDNFENFVWEPLLVKKNALKAAF 504 (522)
T ss_pred ccchhhcCceEcHHHHHHHHHHHH
Confidence 999999999999999999999997
No 27
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-73 Score=607.68 Aligned_cols=391 Identities=18% Similarity=0.237 Sum_probs=344.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 57 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03336 57 GATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREA 130 (517)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC---cceeEe--cCCCccceeEEEeeEE
Q 012693 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (458)
Q Consensus 84 L~~~s~~v~-----~~~~l~~va~ts~~------~~~~l~~li~~A~~~v~~~---~~I~i~--~g~~~~d~~~lv~G~~ 147 (458)
|+++++|++ +.+.|.++|+|+.+ +++.|++++++|+.+++.. ..|++. +|+++. ++++++|++
T Consensus 131 L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~-ds~l~~G~v 209 (517)
T cd03336 131 LLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLK-DSYLDEGFL 209 (517)
T ss_pred HHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCcc-ceEEEeeEE
Confidence 999999884 24679999986664 3678999999999998632 235555 588776 589999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccC--------------CHHHHH-----------HHHhHHHhcCCcEEE
Q 012693 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NSNVIR-----------QASLPCMMQGQSLLV 202 (458)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~--------------~~~~i~-----------~~l~~i~~~~~~lvi 202 (458)
+++++.++ ++..++||+|++++++++ +++++. +.++.+.+.|.++++
T Consensus 210 ~~~~~~~~--------~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~ 281 (517)
T cd03336 210 LDKKIGVN--------QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFI 281 (517)
T ss_pred EecccCCC--------CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 234789999999998654 555543 346778899999999
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Ee
Q 012693 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (458)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (458)
+++.|++.++++|..+ +|++|++|++ ++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 282 ~~~~I~~~~~~~l~~~------~I~av~~v~~-----~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig 345 (517)
T cd03336 282 NRQLIYNYPEQLFADA------GIMAIEHADF-----DGVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIG 345 (517)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCCH-----HHHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEEC
Confidence 9999999999988764 5799998764 35999999999999996 7889999999999986 46
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 012693 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g 359 (458)
++++++|.+|+++ +.|||+|||+|+.+++|.+|+++||+|++|+++++|
T Consensus 346 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 346 EDKLIRFSGVAAG-------------------------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred CeEEEEEEccCCC-------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7889999988653 469999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCc
Q 012693 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGN 433 (458)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~ 433 (458)
+|||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+|+
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGT 474 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCC
Confidence 9999999999999999999765 899999999999999999999999999999999 98976 25668999999999
Q ss_pred cccccccCCccccccHHHHHHhhh
Q 012693 434 YVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 434 ~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+.||++.|||||+.||+++|+.|+
T Consensus 475 ~~d~~~~gI~dp~~vk~~~l~~A~ 498 (517)
T cd03336 475 VGDMKELGITESFKVKRQVLLSAS 498 (517)
T ss_pred ccchhhcCceecHHHHHHHHHHHH
Confidence 999999999999999999999986
No 28
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.1e-74 Score=615.16 Aligned_cols=391 Identities=15% Similarity=0.172 Sum_probs=339.0
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.+++.
T Consensus 60 G~tIlk~i~~~hP~akll------~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 133 (531)
T TIGR02346 60 AATILRELEVQHPAAKLL------VMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEV 133 (531)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccCC---HHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCc--c-----eeEe--cCCCccceeEEEee
Q 012693 84 LDCQAR-KITT---FEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND--L-----ITIF--DRKALYNELNFVKG 145 (458)
Q Consensus 84 L~~~s~-~v~~---~~~l~~va~ts~~-----~~~~l~~li~~A~~~v~~~~--~-----I~i~--~g~~~~d~~~lv~G 145 (458)
|++++. ++++ .+.|.++|+++.+ +++.|++++++|+.++++++ . |.+. .|++.. ++++++|
T Consensus 134 L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~-ds~li~G 212 (531)
T TIGR02346 134 LEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSIS-NSEVLKG 212 (531)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChh-hceeEee
Confidence 999986 7643 6789999877664 37899999999999998654 3 3332 677765 6999999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEecccc-------------CC-----------HHHHHHHHhHHHhcCCcEE
Q 012693 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SN-----------SNVIRQASLPCMMQGQSLL 201 (458)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i-------------~~-----------~~~i~~~l~~i~~~~~~lv 201 (458)
++|++++. + + | ..++||+|++++.++ ++ .+++.++++.+.+.|+|||
T Consensus 213 i~~~~~~~-~-~---~----k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lv 283 (531)
T TIGR02346 213 MVFNREAE-G-S---V----KRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVI 283 (531)
T ss_pred eEEeccCC-C-C---c----eeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 99999932 1 1 1 245666666665432 22 2456788999999999999
Q ss_pred EEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE---
Q 012693 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA--- 278 (458)
Q Consensus 202 ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i--- 278 (458)
|++++|++.++++|.. .+|++|++|+++ +++|||.+|||+++++ ++++++++||+|++|++
T Consensus 284 i~~~~I~d~~~~~l~~------~~I~av~~~~~~-----~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~i 347 (531)
T TIGR02346 284 VTGGSVGDMALHYCEK------YNIMVLKIPSKF-----ELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEI 347 (531)
T ss_pred EECCCcCHHHHHHHHH------CCcEEEecCCHH-----HHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEE
Confidence 9999999999997774 468999998755 5899999999999986 78888899999999975
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012693 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~ 358 (458)
+++++.+|.++.. .+++|||+|||+|+.+++|++|+++||+|++|+++++
T Consensus 348 g~~~~~~i~~~~~------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~ 397 (531)
T TIGR02346 348 GGQKVTVFKQENG------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKD 397 (531)
T ss_pred CCEEEEEEEccCC------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4668888887542 2467999999999999999999999999999999999
Q ss_pred C-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 012693 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (458)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~ 432 (458)
| +|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 398 ~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~ 477 (531)
T TIGR02346 398 NRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAE 477 (531)
T ss_pred CCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCC
Confidence 9 9999999999999999998765 889999999999999999999999999999999 999763 456799999999
Q ss_pred c--cccccccCCccccccHHHHHHhhh
Q 012693 433 N--YVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 433 ~--~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+ +.||++.|||||+.||+++|++|+
T Consensus 478 ~~~i~d~~~~gI~dp~~vk~~~l~~A~ 504 (531)
T TIGR02346 478 SDGVKDASEAGIYDNLATKKWAIKLAT 504 (531)
T ss_pred CccccChhhcCceEcHHHHHHHHHHHH
Confidence 9 599999999999999999999986
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=4.5e-73 Score=605.55 Aligned_cols=391 Identities=19% Similarity=0.229 Sum_probs=344.6
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.+++.
T Consensus 69 G~TIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 142 (533)
T PTZ00212 69 GATILKSVWLDNPAAKIL------VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKA 142 (533)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeEe--cCCCccceeEEEeeEE
Q 012693 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (458)
Q Consensus 84 L~~~s~~v~~-----~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~~---~~I~i~--~g~~~~d~~~lv~G~~ 147 (458)
|+++++|+++ .++|.++|+|+.++ .+.|++++.+|+..+... ..|++. +|+++. ++.+++|++
T Consensus 143 L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~-ds~lv~G~v 221 (533)
T PTZ00212 143 LEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLR-DSYLEDGFI 221 (533)
T ss_pred HHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcc-ccEEEEeEE
Confidence 9999999864 46799999876653 467999999999888432 234443 788876 589999999
Q ss_pred EeccccCCccccccccceeeecCceEEEecccc--------------CCHHHHH-----------HHHhHHHhcCCcEEE
Q 012693 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNSNVIR-----------QASLPCMMQGQSLLV 202 (458)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i--------------~~~~~i~-----------~~l~~i~~~~~~lvi 202 (458)
+++++.++ + +..++||+|+++|+++ ++++++. ..++.+.+.|.++++
T Consensus 222 ~~~~~~~~-~-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv 293 (533)
T PTZ00212 222 LEKKIGVG-Q-------PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFI 293 (533)
T ss_pred EecccCCC-C-------CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 2 3478999999999875 5655543 246678889999999
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Ee
Q 012693 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (458)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (458)
++++|++.++++|..+ +|++||++ ++.+++|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 294 ~~~~I~d~a~~~L~~~------~I~avr~v-----~~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 294 NRQLIYNYPEQLFAEA------GIMAIEHA-----DFDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred eCCCccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEEC
Confidence 9999999999988764 57899854 3467999999999999996 7888889999999998 78
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 012693 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g 359 (458)
++++++|.+|..+ +.|||+|||+|+.+++|+||+++||+|++|+++++|
T Consensus 358 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~ 406 (533)
T PTZ00212 358 EDKLIRFSGCAKG-------------------------------EACTIVLRGASTHILDEAERSLHDALCVLSQTVKDT 406 (533)
T ss_pred CeEEEEEEccCCC-------------------------------CEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8899999987543 569999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCc
Q 012693 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGN 433 (458)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~ 433 (458)
+|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ +++.++|||+.+|+
T Consensus 407 ~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~ 486 (533)
T PTZ00212 407 RVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGT 486 (533)
T ss_pred CEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCc
Confidence 9999999999999999999765 899999999999999999999999999999999 99975 35568999999999
Q ss_pred cccccccCCccccccHHHHHHhhh
Q 012693 434 YVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 434 ~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+.||++.|||||+.||+++|+.|+
T Consensus 487 i~d~~~~gI~dp~~vk~~al~~A~ 510 (533)
T PTZ00212 487 VGDMKELGITESYKVKLSQLCSAT 510 (533)
T ss_pred ccchhhccceecHHHHHHHHHHHH
Confidence 999999999999999999999997
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-73 Score=601.08 Aligned_cols=375 Identities=14% Similarity=0.166 Sum_probs=336.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+++|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (480)
T cd03337 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKI 131 (480)
T ss_pred HHHHHHhccccChHHHHH------HHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999976 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--c---------ceeEe--cCCCccceeEE
Q 012693 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D---------LITIF--DRKALYNELNF 142 (458)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~~--~---------~I~i~--~g~~~~d~~~l 142 (458)
|+++++|++ +.+.|.++|+++.++ ++.+++++++|+..++++ + .|+++ +|++..| +++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~d-s~l 210 (480)
T cd03337 132 LEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIED-SRV 210 (480)
T ss_pred HHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHh-ccc
Confidence 999999987 778899999998873 468999999999999754 2 24555 4877764 999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCC
Q 012693 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCT 222 (458)
Q Consensus 143 v~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~ 222 (458)
++|++|++++.+|.| +.+++||+|+++++++.. +||++++|++.++++|..|
T Consensus 211 i~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~---- 262 (480)
T cd03337 211 LDGVMLNKDVTHPKM-------RRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKA---- 262 (480)
T ss_pred ccceEEeccCCCCCC-------CcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHC----
Confidence 999999999988755 347899999999998764 8899999999999998876
Q ss_pred CccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceee-eEEE---EecceEEEEcCCCChhhHHHH
Q 012693 223 TEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC-KRVI---ATMDNVVIIGGSGELVDIQER 298 (458)
Q Consensus 223 ~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~-~~v~---i~~~~~~~~~~~~~~~~i~~r 298 (458)
+|++|++ +++++|+|||++|||+++++ ++++++++||+| +.++ +++++++++++|+++
T Consensus 263 --~I~~v~~-----v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~------ 324 (480)
T cd03337 263 --GITALRR-----VRKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP------ 324 (480)
T ss_pred --CcEEEEe-----CCHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC------
Confidence 5789985 56788999999999999997 788888999995 4444 356788999988765
Q ss_pred HHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhc-CCcCChhHHHHHHHHHHHh
Q 012693 299 CEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (458)
Q Consensus 299 ~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~-gvVpGGGa~e~~~s~~L~~ 377 (458)
+.|||++||+|+.+++|.||+++||++++++++++ ++|||||++|+++|.+|++
T Consensus 325 -------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~ 379 (480)
T cd03337 325 -------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSE 379 (480)
T ss_pred -------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999 5999999999999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cC-CCCeeEeCCCCccccccccCCccccccHHH
Q 012693 378 LQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QD-SSDLGYNPARGNYVDMFKCGDVDPLKHVPS 451 (458)
Q Consensus 378 ~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~-~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~ 451 (458)
++.. ++++|+++++|++||++||++||+|||+|+.++ .+|++ .+ +.++|||+.+|++.||++.|||||+.||++
T Consensus 380 ~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~ 459 (480)
T cd03337 380 KAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQ 459 (480)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHH
Confidence 8765 899999999999999999999999999999999 99976 23 467999999999999999999999999999
Q ss_pred HHHhhh
Q 012693 452 EFAKAT 457 (458)
Q Consensus 452 al~~A~ 457 (458)
+|++|+
T Consensus 460 ~l~~A~ 465 (480)
T cd03337 460 TYKTAI 465 (480)
T ss_pred HHHHHH
Confidence 999997
No 31
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-74 Score=557.24 Aligned_cols=394 Identities=15% Similarity=0.155 Sum_probs=352.1
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012693 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (458)
Q Consensus 6 ~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~L 84 (458)
-+|||.+++.||+||.| +++|++||.||||||||||+||+|+|+++.++++ |+||+.|+++|++|...+++.|
T Consensus 63 ATIlKlldivhPaaktl------Vdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki 136 (543)
T KOG0361|consen 63 ATILKLLDIVHPAAKTL------VDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKI 136 (543)
T ss_pred HHHHHHHhhcChhHHHH------HHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999988 5999999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--C----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeE--ecCCCccceeEEEeeEE
Q 012693 85 DCQARKIT--T----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMK 147 (458)
Q Consensus 85 ~~~s~~v~--~----~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~~---~~I~i--~~g~~~~d~~~lv~G~~ 147 (458)
+++++.++ + .+.|.+.|.|++++ .++|++++++|+..++.+ ..|-| .+||+++| |.+++|+.
T Consensus 137 ~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~d-S~lv~GVA 215 (543)
T KOG0361|consen 137 KELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMED-SLLVNGVA 215 (543)
T ss_pred HHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccch-hhhcccee
Confidence 99998876 2 35678888887763 678999999999998743 23444 48888875 88999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHH-----------HHHhHHHhcCCcEEEE
Q 012693 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIR-----------QASLPCMMQGQSLLVV 203 (458)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~-------------i~~~~~i~-----------~~l~~i~~~~~~lvii 203 (458)
|++.|....|..+|+ .|.||+|+++|.. +.++++++ +.|++|..+|+++|+.
T Consensus 216 FkKtFsYAGfEqqPK----k~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLS 291 (543)
T KOG0361|consen 216 FKKTFSYAGFEQQPK----KFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLS 291 (543)
T ss_pred eeehccccchhhCcc----ccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEe
Confidence 999999888866555 7999999999853 44555543 4588899999999988
Q ss_pred ecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Eec
Q 012693 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (458)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~---i~~ 280 (458)
.-.|.|.|.++|+.+. +++- |++.+++|.|+..+|||++.++ ..++.++.||.|..++ +++
T Consensus 292 kLpIGD~ATQyFAdrd------iFCA-----GRV~~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 292 KLPIGDLATQYFADRD------IFCA-----GRVPEEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred cccchHHHHHHhhccC------ceec-----CcCCHHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHHHhhcc
Confidence 8899999999888643 3442 5677899999999999999996 6889999999999986 789
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC-
Q 012693 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (458)
Q Consensus 281 ~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g- 359 (458)
++|.+|+||+..+ +||+++||+-++.++|.+|++|||++++|.|+++.
T Consensus 356 eRyN~Fegcp~ak-------------------------------tcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 356 ERYNLFEGCPKAK-------------------------------TCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hhhhhhcCCCccc-------------------------------eeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 9999999998653 69999999999999999999999999999999986
Q ss_pred CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCcc
Q 012693 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNY 434 (458)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~~ 434 (458)
+|+|||+.||++|++|++|+.. .+++|+-+.+|++|||.|||+||+|||+|...+ ++||. +|..|+|+|..++.+
T Consensus 405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i 484 (543)
T KOG0361|consen 405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGI 484 (543)
T ss_pred EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccch
Confidence 9999999999999999999987 999999999999999999999999999999999 99986 578899999999999
Q ss_pred ccccccCCccccccHHHHHHhhh
Q 012693 435 VDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 435 ~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
.||++.+||||..||.++++.|+
T Consensus 485 ~dn~~~~VwEP~~VK~Nai~aat 507 (543)
T KOG0361|consen 485 ADNFEKFVWEPSIVKINAITAAT 507 (543)
T ss_pred hhHHHhhccChHHHHHHHHHHHH
Confidence 99999999999999999999886
No 32
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-72 Score=599.77 Aligned_cols=391 Identities=18% Similarity=0.222 Sum_probs=342.2
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 58 G~tIlk~l~i~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02341 58 GATILKSIGVDNPAAKVL------VDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEA 131 (519)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeEe--cCCCccceeEEEeeEE
Q 012693 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (458)
Q Consensus 84 L~~~s~~v~~-----~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~~---~~I~i~--~g~~~~d~~~lv~G~~ 147 (458)
|+++++|+++ .++|.++|+|++++ .+.|+++..+|+..+... ..|++. .|+++. ++++++|++
T Consensus 132 L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~-~s~l~~G~v 210 (519)
T TIGR02341 132 LKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLN-DSYLDEGFL 210 (519)
T ss_pred HHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcc-cceEEeeEE
Confidence 9999999853 46799999988874 346888999999887421 246665 688775 589999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccCC--------------HHHH-----------HHHHhHHHhcCCcEEE
Q 012693 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN--------------SNVI-----------RQASLPCMMQGQSLLV 202 (458)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~--------------~~~i-----------~~~l~~i~~~~~~lvi 202 (458)
+++++.++ ++..++||+|+++|++++. ++++ ..+++.+.+.|.++++
T Consensus 211 ~~~~~~~~--------~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~ 282 (519)
T TIGR02341 211 LEKKIGVN--------QPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFI 282 (519)
T ss_pred EeccCCCC--------CceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99986432 2337899999999987642 3233 2336678899999999
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Ee
Q 012693 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (458)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (458)
+++.|++.++++|..+ +|+++++|++ ++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 283 ~~~~I~~~~~~~l~~~------~I~~v~~~~~-----~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig 346 (519)
T TIGR02341 283 NRQLIYNYPEQLFADA------GVMAIEHADF-----EGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIG 346 (519)
T ss_pred ECCcCCHHHHHHHHHC------CcEEEecCCH-----HHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEEC
Confidence 9999999999987764 5799998863 46999999999999996 7888889999999886 46
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhc-
Q 012693 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~- 358 (458)
++++++|.+|+++ +.|||+|||+|+.+++|+||+++||+|++|+++++
T Consensus 347 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~ 395 (519)
T TIGR02341 347 EDKLLKFSGVKLG-------------------------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKES 395 (519)
T ss_pred CEEEEEEEcCCCC-------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7789999988754 46999999999999999999999999999999998
Q ss_pred CCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 012693 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGN 433 (458)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~ 433 (458)
++|||||++|+++|..|+++++. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|+
T Consensus 396 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 475 (519)
T TIGR02341 396 RTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGE 475 (519)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCc
Confidence 59999999999999999998765 899999999999999999999999999999999 999762 4567999999999
Q ss_pred cccccccCCccccccHHHHHHhhh
Q 012693 434 YVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 434 ~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+.||++.|||||+.||+++|++|+
T Consensus 476 i~d~~~~gI~dp~~vk~~~l~~A~ 499 (519)
T TIGR02341 476 IADMRKLGIIESYKVKRAVVSSAA 499 (519)
T ss_pred ccchhhccceEcHHHHHHHHHHHH
Confidence 999999999999999999999997
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.3e-71 Score=582.00 Aligned_cols=375 Identities=26% Similarity=0.358 Sum_probs=338.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+|||+|++.||++|++ ++++++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hp~a~ll------~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (464)
T cd00309 50 GATILKEIEVEHPAAKLL------VEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEI 123 (464)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc--cCCHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc------CcceeEe--cCCCccceeEEEeeEE
Q 012693 84 LDCQARK--ITTFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMK 147 (458)
Q Consensus 84 L~~~s~~--v~~~~~l~~va~ts~~------~~~~l~~li~~A~~~v~~------~~~I~i~--~g~~~~d~~~lv~G~~ 147 (458)
|+++++| ..+.+++.++|+++++ +++.+++++++|+.++++ .+.|+|+ .|++.. ++++++|++
T Consensus 124 L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~-ds~li~Gi~ 202 (464)
T cd00309 124 LKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLE-DSELVVGMV 202 (464)
T ss_pred HHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcc-cceeeeeEE
Confidence 9999998 5577899999999998 588899999999999987 5678876 566655 589999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEE
Q 012693 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVC 227 (458)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~ 227 (458)
|+++|.+|+| +..++||+|++++++++. ++++.++|++.++++|.. .+|+
T Consensus 203 ~~~~~~~~~m-------~~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~------~~I~ 252 (464)
T cd00309 203 FDKGYLSPYM-------PKRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAK------LGIM 252 (464)
T ss_pred EecCCCCCCC-------ceeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHH------CCeE
Confidence 9999999987 247899999999998875 566666799999998886 3689
Q ss_pred EEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHH
Q 012693 228 IIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVIIGGSGELVDIQERCEQLRS 304 (458)
Q Consensus 228 ~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i---~~~~~~~~~~~~~~~~i~~r~~~l~~ 304 (458)
+|++ +++++|+|||++|||+++++ ++++++++||+|+.|++ +++++++|.+++.+
T Consensus 253 ~v~~-----~~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------ 310 (464)
T cd00309 253 AVRR-----VRKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG------------ 310 (464)
T ss_pred EEEe-----CCHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeEEEEEecCCC------------
Confidence 9986 45788999999999999996 78888899999999975 45578888876543
Q ss_pred HhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhc-CCcCChhHHHHHHHHHHHhhcCC-C
Q 012693 305 TIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-N 382 (458)
Q Consensus 305 ~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~-gvVpGGGa~e~~~s~~L~~~~~~-~ 382 (458)
+.|||+|||+|+.+++|+||+++||++++|+++++ ++|||||++|+++|+.|++++.. +
T Consensus 311 -------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~ 371 (464)
T cd00309 311 -------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLP 371 (464)
T ss_pred -------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccc
Confidence 46999999999999999999999999999999999 59999999999999999998774 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 383 SDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 383 ~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+++|+++++|++||+.||++|++|||+|+.++ .+|++. +..++|+|..+|++.||++.|||||+.||+++|+.|+
T Consensus 372 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~ 450 (464)
T cd00309 372 GKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSAT 450 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 988763 3457899999999999999999999999999999986
No 34
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-71 Score=584.31 Aligned_cols=377 Identities=18% Similarity=0.211 Sum_probs=332.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
..+||++|++.||++|++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.+++.
T Consensus 50 G~tIlk~l~~~hP~a~ll------~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (472)
T cd03341 50 AATILRELEVQHPAAKLL------VMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEI 123 (472)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc-cC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccC--cc-----eeEe--cCCCccceeEEEee
Q 012693 84 LDCQARK-IT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEN--DL-----ITIF--DRKALYNELNFVKG 145 (458)
Q Consensus 84 L~~~s~~-v~---~~~~l~~va~ts~~-----~~~~l~~li~~A~~~v~~~--~~-----I~i~--~g~~~~d~~~lv~G 145 (458)
|++++.+ +. +.+.+.++++++.+ +++.+++++++|+.+++++ +. |+|. .|++..| +++++|
T Consensus 124 L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~d-s~lv~G 202 (472)
T cd03341 124 LEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLED-SKVVRG 202 (472)
T ss_pred HHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCccc-ceEEee
Confidence 9999865 43 45668888877753 3678999999999999865 43 3332 6777765 799999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCcc
Q 012693 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (458)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~ 225 (458)
++|++.+.+ +...++||+|++++++++. |+||||++++|+++++++|.. .+
T Consensus 203 iv~~~~~~~---------~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~~------~~ 253 (472)
T cd03341 203 MVFKREPEG---------SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCNK------YG 253 (472)
T ss_pred EEEccccCC---------CceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHHH------CC
Confidence 999875421 1247899999999998875 889999999999999997553 46
Q ss_pred EEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHH
Q 012693 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQL 302 (458)
Q Consensus 226 i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~---~~~~~~~~~~~~~~~i~~r~~~l 302 (458)
|++|++|+ +++|+|||++|||+++++ ++++++++||+|++|++. ++++++|.++++.
T Consensus 254 I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------- 313 (472)
T cd03341 254 IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED---------- 313 (472)
T ss_pred eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------
Confidence 89999876 456999999999999997 788888999999999865 4889999887541
Q ss_pred HHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC-CcCChhHHHHHHHHHHHhhcCC
Q 012693 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (458)
Q Consensus 303 ~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~ 381 (458)
++.|||+|||+|+.+++|.||+++||+|++|+++++| +|||||++|++++..|++++..
T Consensus 314 --------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~ 373 (472)
T cd03341 314 --------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEK 373 (472)
T ss_pred --------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhc
Confidence 3569999999999999999999999999999999999 9999999999999999998664
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCC--ccccccccCCccccccHHHHHH
Q 012693 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARG--NYVDMFKCGDVDPLKHVPSEFA 454 (458)
Q Consensus 382 -~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~--~~~dm~~~gI~dp~~vk~~al~ 454 (458)
++++++++++|++||+.||++||+|||+|+.++ .+|+. +++.++|||+.+| ++.||++.|||||+.||+++|+
T Consensus 374 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~ 453 (472)
T cd03341 374 TPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIK 453 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHH
Confidence 789999999999999999999999999999999 98875 3456799999999 9999999999999999999999
Q ss_pred hhh
Q 012693 455 KAT 457 (458)
Q Consensus 455 ~A~ 457 (458)
+|+
T Consensus 454 ~A~ 456 (472)
T cd03341 454 LAT 456 (472)
T ss_pred HHH
Confidence 986
No 35
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-68 Score=513.85 Aligned_cols=404 Identities=19% Similarity=0.226 Sum_probs=344.9
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012693 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (458)
Q Consensus 6 ~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~L 84 (458)
-+|||.|.+.||+|||| +++|+.||.|+||||||||+|||+||..+.+|++ |+||+.|...|+.|.+.++++|
T Consensus 69 aTILk~m~vlhP~akmL------velS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il 142 (534)
T KOG0358|consen 69 ATILKQMNVLHPAAKML------VELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDIL 142 (534)
T ss_pred HHHHHHHhhhChHHHHH------HHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHH
Confidence 48999999999999988 5999999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc-Cc-------ceeE--ecCCCccceeEEEeeE
Q 012693 85 DCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE-ND-------LITI--FDRKALYNELNFVKGM 146 (458)
Q Consensus 85 ~~~s~~v~--~~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~-~~-------~I~i--~~g~~~~d~~~lv~G~ 146 (458)
.+|+.|++ +.+.|.+-|+||.|+ +..++.+.++|+.++-. +. .|++ +.||+.+ ++++++|+
T Consensus 143 ~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvd-Dte~i~gl 221 (534)
T KOG0358|consen 143 DEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVD-DTELIKGL 221 (534)
T ss_pred HhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccc-hhhhhcce
Confidence 99999887 667799999999874 56799999999998743 11 2554 3677765 69999999
Q ss_pred EEeccccCCccccccccce---e--eecCce------EEEeccc-----cCC-HHHHHHHHhHHHhcCCcEEEEecCcch
Q 012693 147 KLEWGLKSPYFFTHKNKKE---C--VLDGAL------VLIYDTK-----ISN-SNVIRQASLPCMMQGQSLLVVAEDVEN 209 (458)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~---~--~~~~~~------Il~~d~~-----i~~-~~~i~~~l~~i~~~~~~lvii~~~i~~ 209 (458)
+|++......-+++.++.+ + .++.|+ |++.|.. +++ -+++++++++|+++|+++++++++|-.
T Consensus 222 vl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILR 301 (534)
T KOG0358|consen 222 VLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILR 301 (534)
T ss_pred EEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHH
Confidence 9987654322223222222 2 234444 3332211 111 135778999999999999999999999
Q ss_pred hhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE-E---ecceEEE
Q 012693 210 EVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-A---TMDNVVI 285 (458)
Q Consensus 210 ~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~-i---~~~~~~~ 285 (458)
++++.|+.|.+.. ++|++||. +.++++|++|+.+|++++++ ++.++++.||+++.++ + ++.+++-
T Consensus 302 davsDLAlHfL~k-lkimvikd-----ieRediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk 370 (534)
T KOG0358|consen 302 DAVSDLALHFLAK-LKIMVIKD-----IEREDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVK 370 (534)
T ss_pred HHHHHHHHHHHHh-CcEEEEcc-----ccHhhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEE
Confidence 9999999988765 69999994 56788999999999999997 8999999999999886 3 4557888
Q ss_pred EcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC-CcCCh
Q 012693 286 IGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGS 364 (458)
Q Consensus 286 ~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g-vVpGG 364 (458)
+.|+.++ |.+++|++||+++.+++|.+|++|||||++|+.++.. .+|||
T Consensus 371 ~tg~~n~------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 371 ITGIQNA------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred EEEeecC------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 8887653 5689999999999999999999999999999998875 99999
Q ss_pred hHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCccccccc
Q 012693 365 GVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNYVDMFK 439 (458)
Q Consensus 365 Ga~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~~~dm~~ 439 (458)
|+.||+++..|..++.. .|.+.|++++|++|||.+|.+||+|||++|..+ .+||+ ++..++|+|+++|.+.||++
T Consensus 421 GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~e 500 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILE 500 (534)
T ss_pred CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHH
Confidence 99999999999999886 889999999999999999999999999999999 99987 46678999999999999999
Q ss_pred cCCccccccHHHHHHhhh
Q 012693 440 CGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 440 ~gI~dp~~vk~~al~~A~ 457 (458)
..|+.|+.|..++++.|+
T Consensus 501 e~VvQPllVs~SaitlA~ 518 (534)
T KOG0358|consen 501 ENVVQPLLVSISAITLAT 518 (534)
T ss_pred HhcccceeeeHHHHHHHH
Confidence 999999999999999886
No 36
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=7.5e-66 Score=545.49 Aligned_cols=392 Identities=21% Similarity=0.320 Sum_probs=348.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
+.+||+++++.||+++++ ++++++||+++||||||+++|+++||+++.++++ |+||..|++||+.|.+.+++.
T Consensus 31 g~tIl~~l~~~~P~~~ll------~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~ 104 (485)
T PF00118_consen 31 GATILKSLKINHPIAKLL------VEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEY 104 (485)
T ss_dssp HHHHHHHSTBSSHHHHHH------HHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhccchhhhH------HHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 468999999999999976 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCH-HHHHHHHHHhcCCC------hhHHHHHHHHHHhhccC---cceeE--ecCCCccceeEEEeeEEEecc
Q 012693 84 LDCQARKITTF-EEIAQVGTTAANGD------GEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMKLEWG 151 (458)
Q Consensus 84 L~~~s~~v~~~-~~l~~va~ts~~~~------~~l~~li~~A~~~v~~~---~~I~i--~~g~~~~d~~~lv~G~~~~~g 151 (458)
|+++++++++. +.++++|.++++++ +.+++++++|+..+..+ +.+.+ ..|++. +++++++|++|+++
T Consensus 105 l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~-~dS~li~Giv~~~~ 183 (485)
T PF00118_consen 105 LEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSI-SDSELINGIVLDKG 183 (485)
T ss_dssp HHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSS-GGEEEESEEEESSS
T ss_pred hhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhhccccc-cccccccceeeecc
Confidence 99999998866 89999999999976 79999999999443211 12333 256666 46899999999999
Q ss_pred ccCCccccccccceeeecCceEEEeccccCCHHH-----------------------HHHHHhHHHhcCCcEEEEecCcc
Q 012693 152 LKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-----------------------IRQASLPCMMQGQSLLVVAEDVE 208 (458)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~~~~-----------------------i~~~l~~i~~~~~~lvii~~~i~ 208 (458)
|.++.|+ ..+++|+|++++++++..+. +.++++.+.+.|.++|+++++|+
T Consensus 184 ~~~~~~~-------~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~ 256 (485)
T PF00118_consen 184 FSSPNMP-------KKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSID 256 (485)
T ss_dssp BSSTTSB-------SEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBT
T ss_pred ccccccc-------cccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccc
Confidence 9988442 36799999999998876665 88999999999999999999999
Q ss_pred hhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEE---EEecceEEE
Q 012693 209 NEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVI 285 (458)
Q Consensus 209 ~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v---~i~~~~~~~ 285 (458)
+.++++|..|+ +.+++ ++++++|++||.+|||+++++ +++++++++|+|+.+ +++++++++
T Consensus 257 ~~~l~~l~~~~------I~~i~-----~v~~~~l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~~i~~~~~~~ 320 (485)
T PF00118_consen 257 DEALQYLNKNG------ILVIR-----RVSKEDLERIARATGASIISS-----LDDLSDEDLGFCKSVEEREIGNKKYIF 320 (485)
T ss_dssp HHHHHHHHHCT------HEEES-----SEHHHHHHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEEEETSSEEEE
T ss_pred cccchhhhhhh------hhccc-----cchHHHHHhhhcccCCcEecc-----cccccchhhhhhhhhhhcccccccccc
Confidence 99999888765 45665 457789999999999999997 688888889999999 678999999
Q ss_pred EcC--CCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC-CcC
Q 012693 286 IGG--SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVP 362 (458)
Q Consensus 286 ~~~--~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g-vVp 362 (458)
+++ +. .++.+||+|||+|+.+++|++|+++||+++++++++++ +||
T Consensus 321 ~~~~~~~-------------------------------~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 369 (485)
T PF00118_consen 321 IEGIGCL-------------------------------SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVP 369 (485)
T ss_dssp EEEHSES-------------------------------SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred ccccccc-------------------------------ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceee
Confidence 983 32 34679999999999999999999999999999999975 999
Q ss_pred ChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeCCCCcccccc
Q 012693 363 GSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPARGNYVDMF 438 (458)
Q Consensus 363 GGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~--~~~~~~G~d~~~~~~~dm~ 438 (458)
|||++|++++.+|++++.. ++++++++++|++||+.||++|++|||+|+.++ ++|+. .++.++|||..+|++.||+
T Consensus 370 GGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~ 449 (485)
T PF00118_consen 370 GGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMK 449 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETT
T ss_pred cCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccc
Confidence 9999999999999888765 889999999999999999999999999999999 99977 3456999999999999999
Q ss_pred ccCCccccccHHHHHHhhh
Q 012693 439 KCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 439 ~~gI~dp~~vk~~al~~A~ 457 (458)
+.|||||+.+|+++++.|+
T Consensus 450 ~~gi~dp~~~k~~~l~~A~ 468 (485)
T PF00118_consen 450 EAGILDPLLVKISALKSAV 468 (485)
T ss_dssp TTTCEEEHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHH
Confidence 9999999999999999986
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-66 Score=496.45 Aligned_cols=390 Identities=19% Similarity=0.254 Sum_probs=338.6
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012693 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (458)
Q Consensus 6 ~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~L 84 (458)
-+|||++.+.||+||+| +++|+.||+|+|||||||+|||++||+++++|+. .+||+.|+.||++|...+++.|
T Consensus 63 AtILksi~vDnpaAkvL------v~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL 136 (527)
T KOG0363|consen 63 ATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEAL 136 (527)
T ss_pred HHHHHhcCCCCchhhhe------eccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence 47999999999999988 5999999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCc---ceeE--ecCCCccceeEEEeeEEE
Q 012693 85 DCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND---LITI--FDRKALYNELNFVKGMKL 148 (458)
Q Consensus 85 ~~~s~~v~~-----~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~~~---~I~i--~~g~~~~d~~~lv~G~~~ 148 (458)
.+.++..++ .++|.++|+|.+.+ .+.|+++.++|+.++...+ .|.| ..|+++.| +.+=+|+.+
T Consensus 137 ~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~d-SfLDeGFlL 215 (527)
T KOG0363|consen 137 TKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLED-SFLDEGFLL 215 (527)
T ss_pred HHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCcccc-cccccccee
Confidence 998877552 37899999876642 5689999999999985433 3444 47888875 788889888
Q ss_pred eccccCCccccccccceeeecCceEEEecccc--------------CCH-----------HHHHHHHhHHHhcCCcEEEE
Q 012693 149 EWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNS-----------NVIRQASLPCMMQGQSLLVV 203 (458)
Q Consensus 149 ~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i--------------~~~-----------~~i~~~l~~i~~~~~~lvii 203 (458)
++.+-- .+| .+++||+||+-++.. .+. +.+...+++|.+.|.+++|-
T Consensus 216 ~K~igv----~qp----kriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN 287 (527)
T KOG0363|consen 216 DKKIGV----NQP----KRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN 287 (527)
T ss_pred ccccCC----CCc----ccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee
Confidence 875421 122 367899999887632 222 24567788999999998887
Q ss_pred ecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Eec
Q 012693 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (458)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~---i~~ 280 (458)
.+-|-+...+.|.. .+|++|...+|.. +|||+..|||.++|+ |++++...||+|+.++ +++
T Consensus 288 RQLiYnyPeqLf~d------agi~aIEHADFdG-----iERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGe 351 (527)
T KOG0363|consen 288 RQLIYNYPEQLFAD------AGIMAIEHADFDG-----IERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGE 351 (527)
T ss_pred hhHhhcCHHHHHhh------cCcceeecccchh-----HHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCc
Confidence 77777777665543 4789999999877 899999999999996 8999999999999875 799
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC-
Q 012693 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (458)
Q Consensus 281 ~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g- 359 (458)
+++.-|.|++- |..|||++||+|++.+||.||++|||||+....+++.
T Consensus 352 d~li~FSGv~~-------------------------------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esr 400 (527)
T KOG0363|consen 352 DKLIKFSGVKL-------------------------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESR 400 (527)
T ss_pred cceeeeccccc-------------------------------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 99999999864 3459999999999999999999999999999888886
Q ss_pred CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCcc
Q 012693 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNY 434 (458)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~~ 434 (458)
+|.|||++||-+++.+.+++.. +|++..++++|++||.++|.+||+|||+|+.++ .+||+ ++..++|+|+.+|++
T Consensus 401 vv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i 480 (527)
T KOG0363|consen 401 VVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEI 480 (527)
T ss_pred eeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCch
Confidence 9999999999999999999886 999999999999999999999999999999999 99997 467789999999999
Q ss_pred ccccccCCccccccHHHHHHhhh
Q 012693 435 VDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 435 ~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
.||.+.||+|++.||.+.+.+|+
T Consensus 481 ~dm~~~Gi~es~~vK~~vv~sas 503 (527)
T KOG0363|consen 481 GDMRELGIVESLKVKQAVVSSAS 503 (527)
T ss_pred hhHHHhhhHHHHHHHHHHHhhhH
Confidence 99999999999999999998875
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-60 Score=470.15 Aligned_cols=396 Identities=17% Similarity=0.221 Sum_probs=341.8
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012693 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (458)
Q Consensus 6 ~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~L 84 (458)
-+||+.+.+.||++|+| +++++.||+|+|||||+|++++++||+++.+|+. ++||+.|+.||+.|...+++++
T Consensus 62 AtiL~~l~V~HPa~KiL------velaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i 135 (545)
T KOG0360|consen 62 ATILSLLEVEHPAAKVL------VELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYI 135 (545)
T ss_pred HHHHHhhhhcchHHHHH------HHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHh
Confidence 47999999999999988 5999999999999999999999999999999999 9999999999999999999999
Q ss_pred hc-cccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---Cc-------ceeEe--cCCCccceeEEE
Q 012693 85 DC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---ND-------LITIF--DRKALYNELNFV 143 (458)
Q Consensus 85 ~~-~s~~v~--~~~~l~~va~ts~~~------~~~l~~li~~A~~~v~~---~~-------~I~i~--~g~~~~d~~~lv 143 (458)
.+ ++.|++ ..+-|.++|++++++ .++|++++++|+..+.. +| .++|- .|.+.. ++.++
T Consensus 136 ~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~-eS~l~ 214 (545)
T KOG0360|consen 136 TEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQI-ESMLL 214 (545)
T ss_pred hccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccch-hheee
Confidence 86 667776 357899999998864 67999999999987631 22 23442 666654 58999
Q ss_pred eeEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHH-----------HHHhHHHhcCCc
Q 012693 144 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIR-----------QASLPCMMQGQS 199 (458)
Q Consensus 144 ~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~-------------i~~~~~i~-----------~~l~~i~~~~~~ 199 (458)
.|+.+++...+..|+ ..+.++||+++|+. +.+++++. .-++++..+|++
T Consensus 215 ~GyaLnc~~asq~m~-------~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~gan 287 (545)
T KOG0360|consen 215 PGYALNCSVASQMMP-------LRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGAN 287 (545)
T ss_pred cceeeeccHhhhccc-------cccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCc
Confidence 999999988776553 36779999999974 34554432 236678899999
Q ss_pred EEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCC-ccCCCCCCceeeeEEE-
Q 012693 200 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMN-STYFVPLKLGSCKRVI- 277 (458)
Q Consensus 200 lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~-~~~~~~~~LG~~~~v~- 277 (458)
+|+++++|||.++.+|+.. ++++||+ .++++|++||++||++++++...+. -+.+++..+|+|++|.
T Consensus 288 vVLtt~gIddmc~K~~vea------gamAVrR-----~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvq 356 (545)
T KOG0360|consen 288 VVLTTGGIDDMCLKYFVEA------GAMAVRR-----CKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQ 356 (545)
T ss_pred EEEEcCCccHHHHHHHHHc------chhhhHH-----HHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHH
Confidence 9999999999999998874 4688885 6789999999999999999843321 1356788999999984
Q ss_pred --EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHH
Q 012693 278 --ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (458)
Q Consensus 278 --i~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a 355 (458)
+++|+++++.+.+.. .|+|++||++++.+||++|++|||+|++|..
T Consensus 357 eri~dde~ilikg~ka~--------------------------------~aSiILrgaNd~~~DEmers~hdaL~Vlkrt 404 (545)
T KOG0360|consen 357 ERIGDDELILIKGTKAT--------------------------------SASIILRGANDFMLDEMERSLHDALCVLKRT 404 (545)
T ss_pred HhcccceeEEeccCccc--------------------------------eeeEEEecCCcccHhhhccchhhHHHHHHHH
Confidence 789999999886533 4899999999999999999999999999999
Q ss_pred HhcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh-----c------C
Q 012693 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE-----Q------D 421 (458)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~-----~------~ 421 (458)
++++ +|||||++|.+++-+|+.|+.. +.+||.++..|++||..+|++|+-||+.|+.+. .++|+ + .
T Consensus 405 Les~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~ 484 (545)
T KOG0360|consen 405 LESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLL 484 (545)
T ss_pred hccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCcccc
Confidence 9998 9999999999999999999987 789999999999999999999999999999999 98886 1 1
Q ss_pred CCCeeEeCCCCccccccccCCccccccHHHHHHhhhC
Q 012693 422 SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATR 458 (458)
Q Consensus 422 ~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~~ 458 (458)
..|+|.|..+|++.|.++.|+++|..+|...|+.|++
T Consensus 485 ~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ate 521 (545)
T KOG0360|consen 485 LKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATE 521 (545)
T ss_pred chhhCccccccEeecceeeeeeccceeehhhhHHHHH
Confidence 2479999999999999999999999999999999863
No 39
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-59 Score=457.56 Aligned_cols=391 Identities=14% Similarity=0.132 Sum_probs=338.2
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012693 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (458)
Q Consensus 6 ~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~L 84 (458)
+.||++|++.||+||.+ .++|.+||+|||||||||++||+|+|.++..+++ |+||+.|++.|.+|++.++..+
T Consensus 62 ~ailrei~Vahpaaksm------iel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~ 135 (527)
T KOG0364|consen 62 NAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRAL 135 (527)
T ss_pred HHHHHHHhhcCcchhhH------hhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 56999999999999987 6899999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC-cc-e------eEe--cCCCccceeEEEeeE
Q 012693 85 DCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN-DL-I------TIF--DRKALYNELNFVKGM 146 (458)
Q Consensus 85 ~~~s~~v~--~~~~l~~va~ts~~------~~~~l~~li~~A~~~v~~~-~~-I------~i~--~g~~~~d~~~lv~G~ 146 (458)
++++.|++ +...+.++...+.. .++.++++..+|+++++.+ |. + +++ +|+.++ ++++++|+
T Consensus 136 ~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~-~s~vl~Gv 214 (527)
T KOG0364|consen 136 DKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLE-DSCVLKGV 214 (527)
T ss_pred HhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccc-ccceecce
Confidence 99887776 55667777655443 2567889999999999865 32 2 333 677776 48999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccC------------------------CHHHHHHHHhHHHhcCCcEEE
Q 012693 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS------------------------NSNVIRQASLPCMMQGQSLLV 202 (458)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~------------------------~~~~i~~~l~~i~~~~~~lvi 202 (458)
.+.+...||.| +..++||+|.++|+++. +.+++..+++.|..-.-.+|+
T Consensus 215 ~~nkdv~Hpkm-------rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVi 287 (527)
T KOG0364|consen 215 MINKDVTHPKM-------RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVI 287 (527)
T ss_pred eeccccCcHHH-------HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEE
Confidence 99999999965 34789999999998642 113456677777777766777
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCcee-eeEEE---E
Q 012693 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI---A 278 (458)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~-~~~v~---i 278 (458)
..+++++.|.++|..+++ .+++ +.|+.+..|++++||++++++ ++|+...+.|. |+.++ +
T Consensus 288 tekG~sdla~hyl~k~~i------T~~r-----r~rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~ 351 (527)
T KOG0364|consen 288 TEKGVSDLAQHYLLKANI------TAIR-----RLRKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKI 351 (527)
T ss_pred eccchhHHHHHHHHhcCc------hhhh-----hhhccccchhhhhcCceeccC-----hhhCchhccCcccceeeeecc
Confidence 778999999999998654 4555 578889999999999999997 89999999995 77776 4
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012693 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~ 358 (458)
+++.|+||..|.+|++ |||++||+|..+++|.+|.+-||+.+.|+.+-+
T Consensus 352 gdeyf~f~~~Ck~pka-------------------------------Ctillrg~skdil~e~ernlqda~~varn~ii~ 400 (527)
T KOG0364|consen 352 GDEYFTFFTDCKEPKA-------------------------------CTILLRGPSKDILNEVERNLQDAMGVARNVIIN 400 (527)
T ss_pred CchhhhhhhhcCCCcc-------------------------------eEEEeccCchhHHHHHHHHhhhHHHHHHHhccC
Confidence 6888999999999986 999999999999999999999999999999887
Q ss_pred C-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCC
Q 012693 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARG 432 (458)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~ 432 (458)
+ ++|||||+||.+|+.|++.+.. ++-+|--+.+++.||+.+||+|++|+|.++... ..+++ .+...+|+|..+|
T Consensus 401 PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg 480 (527)
T KOG0364|consen 401 PKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETG 480 (527)
T ss_pred CcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCcee
Confidence 6 9999999999999999986655 889999999999999999999999999999888 77766 3456789999999
Q ss_pred ccccccccCCccccccHHHHHHhhh
Q 012693 433 NYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 433 ~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
.++||.+.|+|+|..||.+..++|+
T Consensus 481 ~iVDm~~~~iwep~~vK~Q~~ktav 505 (527)
T KOG0364|consen 481 VIVDMVELGIWEPEAVKLQTGKTAV 505 (527)
T ss_pred eEeeeeeccccchhhhhhhhhhHHH
Confidence 9999999999999999999998875
No 40
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-56 Score=448.37 Aligned_cols=395 Identities=16% Similarity=0.167 Sum_probs=327.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
|.+||++++++||++|+| ++.+++|+++.||||+.+|+||++||++|++||. |++|.+|++||++|.+.+++.
T Consensus 68 aatIlrelev~HPaakll------v~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~ 141 (537)
T KOG0362|consen 68 AATILRELEVEHPAAKLL------VEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEI 141 (537)
T ss_pred hHHHHHHhhccCcHHHHH------HHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999977 6999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc----ccCCHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCc-----ceeEe--cCCCccceeEEEeeEE
Q 012693 84 LDCQAR----KITTFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND-----LITIF--DRKALYNELNFVKGMK 147 (458)
Q Consensus 84 L~~~s~----~v~~~~~l~~va~ts~~-----~~~~l~~li~~A~~~v~~~~-----~I~i~--~g~~~~d~~~lv~G~~ 147 (458)
|.++.. +..|.+ .+++++++ .++++++++++|+.++.+.+ +|++- .|++.++ |.+++||+
T Consensus 142 l~~lv~~~~~d~~d~~---~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~-S~Vv~GmV 217 (537)
T KOG0362|consen 142 LPELVVQSIGDLEDKE---WALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLED-SCVVCGMV 217 (537)
T ss_pred hHHHHHHhcccccChH---HHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCccc-ceeeEEEE
Confidence 999763 333444 33333332 37899999999999988763 45553 6888875 88999999
Q ss_pred EeccccCCccccccccce-eeecCc-eEEEeccc----cCCHHHHHH-----------HHhHHHhcCCcEEEEecCcchh
Q 012693 148 LEWGLKSPYFFTHKNKKE-CVLDGA-LVLIYDTK----ISNSNVIRQ-----------ASLPCMMQGQSLLVVAEDVENE 210 (458)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~-~~~~~~-~Il~~d~~----i~~~~~i~~-----------~l~~i~~~~~~lvii~~~i~~~ 210 (458)
|++.....- +..+..+ ..+.+| -+.-++.+ |++++++.+ .++.+..+|.++++..+.++++
T Consensus 218 fkr~~eG~v--~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em 295 (537)
T KOG0362|consen 218 FKRDPEGEV--KSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEM 295 (537)
T ss_pred eccccCCcc--cccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchh
Confidence 999876431 2222222 234555 23444443 666665543 4667888999999999999999
Q ss_pred hhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---EecceEEEEc
Q 012693 211 VLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIG 287 (458)
Q Consensus 211 al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~---i~~~~~~~~~ 287 (458)
+|+ +.|+ ++|+++|.++.. +|.|||+..||++.++ +..+.+..+|.|++|. ++++.+++|.
T Consensus 296 ~Lh--flnk----y~ImVlqi~Sk~-----eLrrlcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v~vF~ 359 (537)
T KOG0362|consen 296 TLH--FLNK----YKIMVLQINSKF-----DLRRLCRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLVVVFR 359 (537)
T ss_pred hhh--hhcc----ccEEEEEeccHh-----hHHHHHHHcCCccchh-----ccCCCCccccccceeeeeecCCceEEEEe
Confidence 998 5555 789999998644 4889999999999997 7888888999999884 6777877776
Q ss_pred CCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC-CcCChhH
Q 012693 288 GSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGV 366 (458)
Q Consensus 288 ~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g-vVpGGGa 366 (458)
.... .+.++||++||+|+..+|+.||.++|++++.+...+++ ++||+|+
T Consensus 360 ~e~~------------------------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGaga 409 (537)
T KOG0362|consen 360 WEST------------------------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGA 409 (537)
T ss_pred eccC------------------------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCch
Confidence 4221 13468999999999999999999999999999999997 9999999
Q ss_pred HHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeCCCC-ccccccccC
Q 012693 367 ALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPARG-NYVDMFKCG 441 (458)
Q Consensus 367 ~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~--~~~~~~G~d~~~~-~~~dm~~~g 441 (458)
+|+++++.|.+|... +|.+|+++..|++||+.+|++||+|||++..++ .+|++ ++..+.|+|+..+ ...|+.++|
T Consensus 410 tEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~ 489 (537)
T KOG0362|consen 410 TEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEG 489 (537)
T ss_pred hHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhc
Confidence 999999999999875 999999999999999999999999999999999 98876 3234678888766 488999999
Q ss_pred CccccccHHHHHHhhh
Q 012693 442 DVDPLKHVPSEFAKAT 457 (458)
Q Consensus 442 I~dp~~vk~~al~~A~ 457 (458)
|||-+.+|.++|+.|+
T Consensus 490 i~D~~~~K~~a~k~at 505 (537)
T KOG0362|consen 490 IWDTLAVKAQAIKLAT 505 (537)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999986
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-55 Score=433.28 Aligned_cols=391 Identities=18% Similarity=0.243 Sum_probs=329.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012693 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (458)
Q Consensus 5 ~~~il~~~~~~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~ 83 (458)
++.+|++||++||.+-++ .-.+..||+..||||||+|+|.++||++|..++. |+||..|..||+.|.+.++++
T Consensus 59 gnvLl~emQiqhPTa~lI------akaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~ 132 (520)
T KOG0359|consen 59 GNVLLKEMQIQHPTASLI------AKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEF 132 (520)
T ss_pred chhhHHHHhhcCchHHHH------HHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhh
Confidence 468999999999998866 4688999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhc-cCcce---eEe----cCCCccceeEEEeeEEEe
Q 012693 84 LDCQARKITTFEEIAQVGTTAANG------DGEIGELIAKVFEKGW-ENDLI---TIF----DRKALYNELNFVKGMKLE 149 (458)
Q Consensus 84 L~~~s~~v~~~~~l~~va~ts~~~------~~~l~~li~~A~~~v~-~~~~I---~i~----~g~~~~d~~~lv~G~~~~ 149 (458)
|+..++++ +.+.|.++|.+|.+. -+.+.+++++|+..+. .++.| .++ ...+. .+..+++|.++|
T Consensus 133 L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~-~dT~~v~glvLd 210 (520)
T KOG0359|consen 133 LEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSL-HDTSLVQGLVLD 210 (520)
T ss_pred hhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCch-hhhHHhhhhhcc
Confidence 99877777 477899999999974 2357778888887775 23222 222 22333 357899999999
Q ss_pred ccccCCccccccccceeeecCceEEEeccccCC-------------HHH-----------HHHHHhHHHhcC---CcEEE
Q 012693 150 WGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNV-----------IRQASLPCMMQG---QSLLV 202 (458)
Q Consensus 150 ~g~~~~~~~~~~~~~~~~~~~~~Il~~d~~i~~-------------~~~-----------i~~~l~~i~~~~---~~lvi 202 (458)
||..||.|++ .++|++||+++..+.. ++| +.+-+.+|.+-+ +.+|+
T Consensus 211 hg~rHpdmp~-------~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvv 283 (520)
T KOG0359|consen 211 HGARHPDMPR-------RVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVV 283 (520)
T ss_pred CCCCCccccc-------chhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEE
Confidence 9999998754 7899999999875421 111 122334444333 34665
Q ss_pred E-ecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---E
Q 012693 203 V-AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---A 278 (458)
Q Consensus 203 i-~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~---i 278 (458)
+ +++|||..|..|+.+ +|+++|+. ++..||||.++|||..+.+ ++|++|+.||.|+.|. +
T Consensus 284 inqkGidp~sld~~a~~------gIlaLRRA-----KRRNmERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tl 347 (520)
T KOG0359|consen 284 INQKGIDPTSLDSLAKS------GILALRRA-----KRRNMERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTL 347 (520)
T ss_pred ecccCCCCCcchhhhhc------chHHHHHH-----hhhhHHHHHHhhccceecc-----cccCChhhccccceeEEeec
Confidence 5 579999999988865 46788864 3457999999999999986 8999999999999996 6
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012693 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~ 358 (458)
++++|+|+++|.+|.+ |||+++|+|++.+-.+++.++|+++++++++++
T Consensus 348 GEEkfTFIE~~~~p~S-------------------------------~TiLikgpnkht~tQikdairdglrav~ntl~d 396 (520)
T KOG0359|consen 348 GEEKFTFIEKCNNPSS-------------------------------VTILIKGPNKHTITQIKDAIRDGLRAVKNTLED 396 (520)
T ss_pred cceeeEeeecCCCCcc-------------------------------eEEEEeCCccchHHHHHHHHhhHHHHHHHHhhh
Confidence 8999999999999964 899999999999999999999999999999999
Q ss_pred C-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-CCCCeeEeCCCCcc
Q 012693 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-DSSDLGYNPARGNY 434 (458)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~NaG~d~~~v-~~l~~~-~~~~~G~d~~~~~~ 434 (458)
+ ++||+|+.|.+++.+|+..... +++.++|+++|++||..+|++|++|+|+|+.+. .+|... .....|+|..+|+.
T Consensus 397 ~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~ 476 (520)
T KOG0359|consen 397 KCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEE 476 (520)
T ss_pred cccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCc
Confidence 7 9999999999999999987765 899999999999999999999999999999888 777543 22356999999999
Q ss_pred ccccccCCccccccHHHHHHhhh
Q 012693 435 VDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 435 ~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
.|-...||||.+.||++.|.+++
T Consensus 477 ~~~~~~gi~Dny~v~~~~l~s~~ 499 (520)
T KOG0359|consen 477 CDPSRKGIYDNYSVKKQLLRSEA 499 (520)
T ss_pred cchhhccccchHHHHHHHhhhhH
Confidence 99999999999999999988764
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-53 Score=408.42 Aligned_cols=297 Identities=18% Similarity=0.180 Sum_probs=272.6
Q ss_pred cCccccccchhhhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHhccccccCC
Q 012693 15 INTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT 93 (458)
Q Consensus 15 ~~p~~k~~~~~~~~~~~s~~qd~e~GDGTTtvvvLa~~LL~~~~~li~-gi~P~~I~~G~~~a~~~~~~~L~~~s~~v~~ 93 (458)
.|+++|++ ..+|+.||.++|||||.+++|++.+++++.+++. |+||..|.+||++|...++++|.+++.+++
T Consensus 71 d~~IakLm------v~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e- 143 (400)
T KOG0357|consen 71 VHQIAKLI------VILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE- 143 (400)
T ss_pred chHHHHHH------HHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-
Confidence 57888877 5899999999999999999999999999999999 999999999999999999999999987765
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCccccccccceeeecCceE
Q 012693 94 FEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALV 173 (458)
Q Consensus 94 ~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~~~I~i~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~~~~~~~~~~I 173 (458)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCEE
Q 012693 174 LIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 253 (458)
Q Consensus 174 l~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~i 253 (458)
+..+++.++++|++++||+|++||+|.|.|..|++. |||..+- -++|-||++|||+|
T Consensus 144 ------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lp------avrwVGG-----pEiEliAiaT~grI 200 (400)
T KOG0357|consen 144 ------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLP------AVRWVGG-----PEIELIAIATGGRI 200 (400)
T ss_pred ------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCC------ceeecCC-----cceEEEEeecCCee
Confidence 456788899999999999999999999999988754 7886542 35899999999999
Q ss_pred ecCCCCCCccCCCCCCceeeeEEE-E----ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCcEEE
Q 012693 254 LTGGSGMNSTYFVPLKLGSCKRVI-A----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVL 328 (458)
Q Consensus 254 ~s~~~~~~~~~~~~~~LG~~~~v~-i----~~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl~~l~g~~~tI 328 (458)
+.+ |+++++++||+|+.|. + ++|+..+++.|++.++ +||
T Consensus 201 Vpr-----F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nska-------------------------------VTi 244 (400)
T KOG0357|consen 201 VPR-----FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKA-------------------------------VTI 244 (400)
T ss_pred ecc-----HhhhCHhhccccceEEEEecccccceEEEEEecCCCce-------------------------------EEE
Confidence 997 8999999999999985 3 4889999999998765 699
Q ss_pred EEccCchhHHHHHHHHHHHHHHHHHHHHhcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHh
Q 012693 329 KVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASN 406 (458)
Q Consensus 329 ~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~~i~~~a~AL~~ip~~La~N 406 (458)
.|||+++.+++|.+|++|||||++|+.+++. +|+|||++|+.||-.+.+-++. ++.|||++++|++||+.||..||+|
T Consensus 245 fvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaen 324 (400)
T KOG0357|consen 245 FVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAEN 324 (400)
T ss_pred EEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhc
Confidence 9999999999999999999999999999996 9999999999999999887775 9999999999999999999999999
Q ss_pred cCCChHHH-HHHHh----cCCCCeeEeCCCCccccccccCCccccccHHHHHHhhh
Q 012693 407 AGVDGSVI-DKLLE----QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 457 (458)
Q Consensus 407 aG~d~~~v-~~l~~----~~~~~~G~d~~~~~~~dm~~~gI~dp~~vk~~al~~A~ 457 (458)
+|++|.+. +.+++ ..++++|+|+....-.||++.+|+||+..|++.+..|+
T Consensus 325 sgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laT 380 (400)
T KOG0357|consen 325 SGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLAT 380 (400)
T ss_pred cCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHH
Confidence 99999988 87765 35788999999888899999999999999999999987
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.96 E-value=1.7e-27 Score=225.48 Aligned_cols=192 Identities=26% Similarity=0.336 Sum_probs=163.9
Q ss_pred HHHHHHHHHhcC-----CChhHHHHHHHHHHhhcc------CcceeEe--cCCCccceeEEEeeEEEeccccCCcccccc
Q 012693 95 EEIAQVGTTAAN-----GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHK 161 (458)
Q Consensus 95 ~~l~~va~ts~~-----~~~~l~~li~~A~~~v~~------~~~I~i~--~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~ 161 (458)
++|.++|+++.+ +++.+++++++|+..+++ .+.|+|+ +|++.. ++++++|++|+++|.+|+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~-ds~li~Gv~~~~~~~~~~m~--- 77 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLE-DSELVVGVVFDKGYASPYMP--- 77 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChh-hceeEeeEEEeccccCCCCC---
Confidence 468899999988 678899999999999987 3467775 666665 58999999999999999883
Q ss_pred ccceeeecCceEEEeccccCCHHHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhh
Q 012693 162 NKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 241 (458)
Q Consensus 162 ~~~~~~~~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ 241 (458)
..++||+|+++++++.. +++++++|++.++++|..+ +|++|++ +++.+
T Consensus 78 ----~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~ 125 (209)
T cd03333 78 ----KRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRR-----VKKED 125 (209)
T ss_pred ----eEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEe-----CCHHH
Confidence 37899999999998775 6777778999999988863 5789986 55678
Q ss_pred HHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHH
Q 012693 242 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRL 318 (458)
Q Consensus 242 le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~---~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~~l~eRl 318 (458)
|+|||++|||+++++ ++++++++||+|++|++. ++++++|.+++.+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999996 788888999999999864 4458888887643
Q ss_pred hhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012693 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (458)
Q Consensus 319 ~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~ 358 (458)
+.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 175 -----~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 -----KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 46999999999999999999999999999998764
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.94 E-value=2.7e-25 Score=217.09 Aligned_cols=198 Identities=11% Similarity=0.154 Sum_probs=162.0
Q ss_pred ChhHHHHHHHHHHhhccC----------cceeEe--cCCCccceeEEEeeEEEeccccCCccccccccceeeecCceEEE
Q 012693 108 DGEIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLI 175 (458)
Q Consensus 108 ~~~l~~li~~A~~~v~~~----------~~I~i~--~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~ 175 (458)
.+.|++++++|+..+.++ ..|+|. .|+++. ++++++|+++++++.++.|+ ..++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~-dS~li~Gvvi~k~~~~~~m~-------~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPS-DSEVVDGVVFTKNVAHKRMP-------SKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHH-HcEEEeeEEEeCCCCCccCC-------cccCCCcEEE
Confidence 567999999999988532 125664 688775 59999999999998887663 3789999999
Q ss_pred eccccCC------H-----------HHHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccch
Q 012693 176 YDTKISN------S-----------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR 238 (458)
Q Consensus 176 ~d~~i~~------~-----------~~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r 238 (458)
+++++.. + +.+...++++++.|.++|+++++|++.++++|..+ +|++++++ +
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~v-----~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLNV-----K 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEec-----C
Confidence 9987632 1 13456688899999999999999999999988864 46899864 5
Q ss_pred hhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE---ec-----ceEEEEcCCCChhhHHHHHHHHHHHhhhcc
Q 012693 239 KAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TM-----DNVVIIGGSGELVDIQERCEQLRSTIKLST 310 (458)
Q Consensus 239 ~~~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i---~~-----~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~ 310 (458)
+.+|+|||++|||+++++. .+++++++||+|+.|++ ++ ++++||++|+.+.
T Consensus 161 ~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~----------------- 219 (261)
T cd03334 161 PSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKEL----------------- 219 (261)
T ss_pred HHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCc-----------------
Confidence 6789999999999999962 24678889999999975 33 5799999987553
Q ss_pred hHHHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 012693 311 SDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (458)
Q Consensus 311 s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a~~~g 359 (458)
.+||+|||+|+++++|.||+++||+++++++..+.
T Consensus 220 --------------~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 220 --------------GCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred --------------eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 58999999999999999999999999999987664
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.70 E-value=1.9e-07 Score=105.95 Aligned_cols=204 Identities=12% Similarity=0.182 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHhhccC----------cceeEe--cCCCccceeEEEeeEEEeccccCCccccccccceeeecCceEEEec
Q 012693 110 EIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYD 177 (458)
Q Consensus 110 ~l~~li~~A~~~v~~~----------~~I~i~--~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il~~d 177 (458)
.+..++.+|...+.++ +.+.++ .+|.. .+++++.|+++.+-..+-.|. ..+++|+|++..
T Consensus 336 ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~-~dS~vi~Gvv~sKn~~~k~M~-------~~~e~prilll~ 407 (1598)
T KOG0230|consen 336 IITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSR-VDSEVIKGVVCSKNVAHKRMA-------TKYENPRILLLG 407 (1598)
T ss_pred HHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCc-ccceeeeEEEeecchhhhhhh-------hhccCCceEEEe
Confidence 4555666776666443 124554 56654 469999999999987765554 377889998887
Q ss_pred cc---------cCCHH--------HHHHHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhh
Q 012693 178 TK---------ISNSN--------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKA 240 (458)
Q Consensus 178 ~~---------i~~~~--------~i~~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~ 240 (458)
+. +.+.+ .+...+..|....-+++++.+++++.|..+|..- + |..+ .+++..
T Consensus 408 g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~---I~lv-----lnvK~s 476 (1598)
T KOG0230|consen 408 GPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---G---ISLV-----LNVKRS 476 (1598)
T ss_pred cchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---C---eEEE-----EeccHH
Confidence 53 33332 2334455565556678899999999999877643 2 2222 145667
Q ss_pred hHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEe--------cceEEEEcCCCChhhHHHHHHHHHHHhhhcchH
Q 012693 241 IMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT--------MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD 312 (458)
Q Consensus 241 ~le~la~~tG~~i~s~~~~~~~~~~~~~~LG~~~~v~i~--------~~~~~~~~~~~~~~~i~~r~~~l~~~i~~~~s~ 312 (458)
.|+||++.|||.|+++ ++.++...||.|+.+++. ....+||+||..+.
T Consensus 477 ~leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l------------------- 532 (1598)
T KOG0230|consen 477 LLERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL------------------- 532 (1598)
T ss_pred HHHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC-------------------
Confidence 8999999999999986 677888899999998752 22357889987664
Q ss_pred HHHHHHhhhcCCcEEEEEccCchhHHHHHHHHHHHHHHHHH-HHHhcCCcCChhHHH
Q 012693 313 KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ-AAKEEGIVPGSGVAL 368 (458)
Q Consensus 313 ~l~eRl~~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r-~a~~~gvVpGGGa~e 368 (458)
.|||++||.+..++.+.++-+.=++-++- .+++..|+.--|+..
T Consensus 533 ------------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 533 ------------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred ------------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 28999999999999999998887776665 345656666665544
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00052 Score=73.66 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=71.6
Q ss_pred HHHHHhHHHhcCCc-EEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhH-HHHHHHhCCEEecCCCCCCcc
Q 012693 186 IRQASLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNST 263 (458)
Q Consensus 186 i~~~l~~i~~~~~~-lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~l-e~la~~tG~~i~s~~~~~~~~ 263 (458)
+..+++.+.+.|.+ +++++++|+|.++++|..+ .|++++++ .++++ ++|+.+|||++++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~v-----~~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGRRV-----KKEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceeccee-----cchhhHHHHHHccCceEEee-----cc
Confidence 34456677888999 7788999999999988864 46787765 34567 79999999999996 78
Q ss_pred CCCCCCcee--eeEEEE---ecceEEEEcCCCC
Q 012693 264 YFVPLKLGS--CKRVIA---TMDNVVIIGGSGE 291 (458)
Q Consensus 264 ~~~~~~LG~--~~~v~i---~~~~~~~~~~~~~ 291 (458)
+.++..+|. |+.|+. ++++++++.++.+
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~ 355 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERKA 355 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhhh
Confidence 899999999 999864 4666777777653
No 47
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=44.02 E-value=82 Score=25.35 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=33.4
Q ss_pred HHHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCE
Q 012693 188 QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (458)
Q Consensus 188 ~~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~ 252 (458)
+.++.+.+....+|++++|+++.....+..--.+...+++-| |+ +++|-++||-.
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V--~s--------~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF--KS--------KHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE--CC--------HHHHHHHhCCC
Confidence 345556566678999999999987765543211111333333 22 56888888753
No 48
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=42.46 E-value=55 Score=35.42 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=28.0
Q ss_pred HHHHHhhccCcceeEecCCCccceeEEEe--eEEEeccccCCcccc
Q 012693 116 AKVFEKGWENDLITIFDRKALYNELNFVK--GMKLEWGLKSPYFFT 159 (458)
Q Consensus 116 ~~A~~~v~~~~~I~i~~g~~~~d~~~lv~--G~~~~~g~~~~~~~~ 159 (458)
.+++..++.++.+.++.+... +.+++.+ |..++.+|+.|+|+.
T Consensus 167 ~~~~s~l~~~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~ 211 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLL 211 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEE
Confidence 445555556666666554444 3477774 888888888888754
No 49
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=29.37 E-value=22 Score=38.53 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=49.1
Q ss_pred cCCcEEEEecCcch-----hhhhhHHhhhcCCC----ccEEEEEcCCCccchhhhHHHHHHHhCCEEecC
Q 012693 196 QGQSLLVVAEDVEN-----EVLGDIATDFTCTT----EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (458)
Q Consensus 196 ~~~~lvii~~~i~~-----~al~~l~~n~~~~~----~~i~~vk~~~~~~~r~~~le~la~~tG~~i~s~ 256 (458)
...|+.|..+++++ +++..++.++.++. .++++++.| +++.+.+.|++....++.++...
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 34578889999998 88888888887664 388888888 99999999999999998876654
No 50
>PRK06683 hypothetical protein; Provisional
Probab=26.22 E-value=1.3e+02 Score=23.85 Aligned_cols=54 Identities=19% Similarity=0.083 Sum_probs=32.2
Q ss_pred HHhHHHhcCCcEEEEecCcchhhhhhHHhhhcCCCccEEEEEcCCCccchhhhHHHHHHHhCCE
Q 012693 189 ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (458)
Q Consensus 189 ~l~~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~le~la~~tG~~ 252 (458)
.++.+++..+.+||+++|.++.....+..--.. .+|-.+..+ ..++|..+||-.
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~--~~Vpv~~~~--------t~~eLG~A~G~~ 72 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQ--HNIPITKVE--------SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHh--cCCCEEEEC--------CHHHHHHHhCCc
Confidence 345555555789999999999876654321001 233334332 256888888853
No 51
>smart00574 POX domain associated with HOX domains.
Probab=25.72 E-value=1e+02 Score=27.23 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCcCChhHHHHHHHHHHHh
Q 012693 337 EVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (458)
Q Consensus 337 ~l~E~~r~i~DAl~a~r~a~~~-gvVpGGGa~e~~~s~~L~~ 377 (458)
.++|.+++++--..-++..+.. ..|+|.|++-.+.+-+|+.
T Consensus 85 mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a 126 (140)
T smart00574 85 MLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKT 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 5677777777777777766665 3789999988887766643
No 52
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=24.64 E-value=34 Score=36.24 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHhhc
Q 012693 343 LKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQ 379 (458)
Q Consensus 343 r~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~ 379 (458)
|.+.||+..+|++.+.=+|.|||+-+-.+...|..++
T Consensus 217 ~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~ 253 (617)
T COG3962 217 RELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFA 253 (617)
T ss_pred HHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHH
Confidence 6678899999988776799999999888888887765
No 53
>PF09050 SNN_linker: Stannin unstructured linker; InterPro: IPR015136 This entry represents an unstructured protein region which connects two adjacent stannin helical domains. It contains a conserved CXC metal-binding motif and a putative 14-3-3-zeta binding domain. Upon coordinating dimethytin, considerable structural or dynamic changes in the flexible loop region of SNN may take place, recruiting other binding partners such as 14-3-3-zeta, and thereby initiating the apoptotic cascade []. ; PDB: 1ZZA_A.
Probab=24.61 E-value=29 Score=20.87 Aligned_cols=17 Identities=0% Similarity=0.003 Sum_probs=8.5
Q ss_pred hhhhhhhhccc--ccCCch
Q 012693 28 SRNYGAEDTKR--FIDCTK 44 (458)
Q Consensus 28 ~~~~s~~qd~e--~GDGTT 44 (458)
+..++++.|+| +|||-|
T Consensus 5 lqr~sqsedeesivgeget 23 (26)
T PF09050_consen 5 LQRISQSEDEESIVGEGET 23 (26)
T ss_dssp S-SS-SS---TTTTTTTSS
T ss_pred hhhhccccchhhcccCCcc
Confidence 45677777764 799866
No 54
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=22.68 E-value=4.4e+02 Score=21.77 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=42.4
Q ss_pred HHHHhHHHhcCCcEEEEec-CcchhhhhhHHhhhcCCCccEEEEEcC-CCccchhhhHHHHHHHhCCEEecC
Q 012693 187 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAA-GLAEDRKAIMEDLAILTGGQVLTG 256 (458)
Q Consensus 187 ~~~l~~i~~~~~~lvii~~-~i~~~al~~l~~n~~~~~~~i~~vk~~-~~~~~r~~~le~la~~tG~~i~s~ 256 (458)
..+|....-.=.|+|.+.+ ++++.++..+-..-.. ...+=||.. ...+.+++..+.||..||+.++..
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~--hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~ 77 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEH--HELIKVKIATEDRETKTLIVEAIVRETGACNVQV 77 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHH--CCcEEEEecCCChhHHHHHHHHHHHHHCCEEEee
Confidence 3456665544579998875 8999888755532111 122333322 223446778899999999998863
No 55
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=21.50 E-value=2.5e+02 Score=22.22 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=38.6
Q ss_pred HHhHHHhcCCcEEEEec-CcchhhhhhHHhhhcCCCccEEEEEcCC-CccchhhhHHHHHHHhCCEEecC
Q 012693 189 ASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLTG 256 (458)
Q Consensus 189 ~l~~i~~~~~~lvii~~-~i~~~al~~l~~n~~~~~~~i~~vk~~~-~~~~r~~~le~la~~tG~~i~s~ 256 (458)
+|......-.|++.+.+ ++++..+..+-..-.. ..++=|+... ..+.+++..+.|+..|||.++..
T Consensus 8 ~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~--~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 8 FLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEK--HELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHH--HSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHh--CCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 55555555578888875 7888877755432211 2345555433 22335678889999999998863
No 56
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=20.70 E-value=96 Score=30.26 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=24.6
Q ss_pred EEEEEccCchhHHHHHHHHHHHHHHHHH
Q 012693 326 AVLKVCGHGKAEVREKKLKITNALHAVQ 353 (458)
Q Consensus 326 ~tI~vrG~t~~~l~E~~r~i~DAl~a~r 353 (458)
.||+++| ++.++++.+|.++|-+++.+
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 4999999 78889999999999999985
Done!