BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012694
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 129/253 (50%), Gaps = 22/253 (8%)
Query: 177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
S++ S L A+P +I K +LD+ SN L SLP + L L++L ++ NKL TLP
Sbjct: 20 SVDCSSKKLTAIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77
Query: 236 ESIAR-CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKY 293
I + +L L + N L LP + L+NL L + N+L++ PP + + + L Y
Sbjct: 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 294 LDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRA 351
L +NEL LP+ + KLT L+ L L + N L +PE D L L+ L L NNQ++
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYN--NQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 352 LPDTFF-RLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGII-------AEAQ 403
+P+ F LE L L L +N P + G+ + +++ K+ D + E
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN-----PWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKG 250
Query: 404 QKSILEANKQQQA 416
K++LE ++ A
Sbjct: 251 GKAVLEITEKDAA 263
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 98/218 (44%), Gaps = 39/218 (17%)
Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
N ++ S KL +P +I + +LD N L LP+ + L L L + NKL+
Sbjct: 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 280 TFPPSIC-EMRSLKYLDAHFNELHGL-------------------------PRAIGKLTR 313
T P I E+++L+ L N+L L PR LT+
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 314 LEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
L L+L +N+L LP+ + D L +L+EL L NNQ++ +P+ F +L L L LD N
Sbjct: 135 LTYLSLG--YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 372 LVIPPMEIVNKGVEAVK--EFMAKRWD----GIIAEAQ 403
L P E +E +K + WD GII A+
Sbjct: 193 LKRVP-EGAFDSLEKLKMLQLQENPWDCTCNGIIYMAK 229
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 12/184 (6%)
Query: 215 IGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIK 274
I L N++ L + GNKL+ + ++ ++L L + N L LP + L NL+ L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 275 LNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPET 332
N+L++ P + + + +L YL+ N+L LP+ + KLT L L+LS +N L LPE
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS--YNQLQSLPEG 175
Query: 333 IGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEF 390
+ D L L++L L NQ++++PD F RL +L + L N P + G+ + E+
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-----PWDCTCPGIRYLSEW 230
Query: 391 MAKR 394
+ K
Sbjct: 231 INKH 234
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 168 AFGRLRGLVSLNLSRNLLEAMPDSIAG-LQKLEELDVSSNLLQSLPDSI-GLLLNLKVLN 225
A L L L L+ N L+++P+ + L L+EL + N LQSLPD + L NL LN
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 226 VSGNKLNTLPESIA-RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS 284
++ N+L +LP+ + + ++L ELD S+N L LP + L L+ L + N+L++ P
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199
Query: 285 ICE-MRSLKYLDAHFN 299
+ + + SL+Y+ H N
Sbjct: 200 VFDRLTSLQYIWLHDN 215
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 93/161 (57%), Gaps = 7/161 (4%)
Query: 215 IGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIK 274
I L N++ L + GNKL+ + ++ ++L L + N L LP + L NL+ L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 275 LNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPET 332
N+L++ P + + + +L YL + N+L LP+ + KLT L L+L +N L LPE
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN--QLQSLPEG 175
Query: 333 IGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
+ D L L++L L++NQ++++PD F RL +LT + L NP
Sbjct: 176 VFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNP 216
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 199 EELDVSSNLLQSLPDSI---GLLLNLKVLNVSG----NKLNTLPESIARCSSLVELDASF 251
E + VS+ + Q PD + NLK +V+ N+LN++ + IA S + S
Sbjct: 1 ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDI----KSV 56
Query: 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAI-GK 310
+ LP N+ L++ NKL ++ E+ +L YL N+L LP + K
Sbjct: 57 QGIQYLP--------NVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDK 107
Query: 311 LTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLD 368
LT L+ L L N L LP+ + D L NL L L +NQ+++LP F +L NLT+L+LD
Sbjct: 108 LTNLKELVLVEN--QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD 165
Query: 369 QNPLVIPPMEIVNK 382
N L P + +K
Sbjct: 166 NNQLQSLPEGVFDK 179
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
G V+L L L PD L L+ + + L LPD+ L+ L ++ N L
Sbjct: 82 GRVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRA 141
Query: 234 LPESIARCSSLVELD-ASFNNLVCLPTNIG--------YGLLNLERLSIKLNKLRTFPPS 284
LP SIA + L EL + L LP + GL+NL+ L ++ +R+ P S
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201
Query: 285 ICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDL 344
I +++LK L + L L AI L +LE L+L L P G L+ L L
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG-CTALRNYPPIFGGRAPLKRLIL 260
Query: 345 SN-NQIRALPDTFFRLENLTKLNL 367
+ + + LP RL L KL+L
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDV-SSNLLQSLP 212
T+D A L LP+ + GL +L L+RN L A+P SIA L +L EL + + L LP
Sbjct: 110 TIDAAG--LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167
Query: 213 DSIGL---------LLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGY 263
+ + L+NL+ L + + +LP SIA +L L + L L I +
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI-H 226
Query: 264 GLLNLERLSIK-LNKLRTFPPSICEMRSLKYLD-AHFNELHGLPRAIGKLTRLEVLNLSS 321
L LE L ++ LR +PP LK L + L LP I +LT+LE L+L
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
Query: 322 NFNDLTELPETIGDL 336
N L+ LP I L
Sbjct: 287 CVN-LSRLPSLIAQL 300
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 262 GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSS 321
+ L +L+ +I L P + + L+ L N L LP +I L RL L++ +
Sbjct: 100 AFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159
Query: 322 NFNDLTELPETIGD---------LINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
+LTELPE + L+NL+ L L IR+LP + L+NL L + +PL
Sbjct: 160 -CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218
Query: 373 V--------IPPMEIVN-KGVEAVKEF 390
+P +E ++ +G A++ +
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNY 245
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 145 EAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDV- 203
E + V ++++ L ++ LP + L+ L SL + + L A+ +I L KLEELD+
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237
Query: 204 SSNLLQSLPDSIGLLLNLKVLNVSG-NKLNTLPESIARCSSLVELD-ASFNNLVCLPTNI 261
L++ P G LK L + + L TLP I R + L +LD NL LP+ I
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 262 G 262
Sbjct: 298 A 298
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 247 LDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC-EMRSLKYLDAHFNELHGLP 305
LD N+L LP + L +L +L + NKL++ P + ++ SL YL+ N+L LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 306 RAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLENL 362
+ KLT+L+ L L N N L LP+ + D L L++L L NQ++++PD F RL +L
Sbjct: 93 NGVFDKLTQLKELAL--NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 363 TKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGII 399
+ L N P + G+ + E++ K G++
Sbjct: 151 QYIWLHDN-----PWDCTCPGIRYLSEWINKH-SGVV 181
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 4/131 (3%)
Query: 201 LDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNTLPESIA-RCSSLVELDASFNNLVCLP 258
LD+ +N L+SLP+ + L +L L + GNKL +LP + + +SL L+ S N L LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 259 TNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLEV 316
+ L L+ L++ N+L++ P + + + LK L + N+L +P + +LT L+
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 317 LNLSSNFNDLT 327
+ L N D T
Sbjct: 153 IWLHDNPWDCT 163
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 178 LNLSRNLLEAMPDSIAG-LQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNTLP 235
L+L N L+++P+ + L L +L + N LQSLP+ + L +L LN+S N+L +LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 236 ESIA-RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKY 293
+ + + L EL + N L LP + L L+ L + N+L++ P + + + SL+Y
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 294 LDAHFN 299
+ H N
Sbjct: 153 IWLHDN 158
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 157 LADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPDSIAG-LQKLEELDVSSNLLQSLPDS 214
L +L+ LP F +L L LNLS N L+++P+ + L +L+EL +++N LQSLPD
Sbjct: 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG 118
Query: 215 I-GLLLNLKVLNVSGNKLNTLPESI 238
+ L LK L + N+L ++P+ +
Sbjct: 119 VFDKLTQLKDLRLYQNQLKSVPDGV 143
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 123/263 (46%), Gaps = 22/263 (8%)
Query: 171 RLRGLVSLNLSRNLLEA-MPDSIAGLQ-KLEELDVSSNLLQS--LPDSIGLLLN----LK 222
++RGL L+LS N +P+S+ L L LD+SSN LP+ L N L+
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN---LCQNPKNTLQ 397
Query: 223 VLNVSGNKL-NTLPESIARCSSLVELDASFNNLV-CLPTNIGYGLLNLERLSIKLNKLRT 280
L + N +P +++ CS LV L SFN L +P+++G L L L + LN L
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEG 456
Query: 281 -FPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLI 337
P + +++L+ L FN+L G +P + T L ++LS+ N LT E+P+ IG L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN--NRLTGEIPKWIGRLE 514
Query: 338 NLRELDLSNNQIRA-LPDTFFRLENLTKLNLDQNPL--VIPPMEIVNKGVEAVKEFMAKR 394
NL L LSNN +P +L L+L+ N IP G A KR
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 395 WDGIIAEAQQKSILEANKQQQAQ 417
+ I + +K A + Q
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQ 597
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 116/268 (43%), Gaps = 55/268 (20%)
Query: 165 LPEAFGRLRGLVSLNLSRNLLEA-MPDSIAGLQKLEELDVSSNLLQS-LPDSIGLLLNLK 222
+P+ ++ L +L L N L +P ++ L + +S+N L +P IG L NL
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 223 VLNVSGNKLN-TLPESIARCSSLVELD------------ASFNNLVCLPTNIGYG----- 264
+L +S N + +P + C SL+ LD A F + N G
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 265 ---------------LLNLERL-SIKLNKLRTFPPSICEMR--------------SLKYL 294
LL + + S +LN+L T P R S+ +L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 295 DAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLINLRELDLSNNQIRA- 351
D +N L G +P+ IG + L +LNL N D++ +P+ +GDL L LDLS+N++
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHN--DISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEI 379
+P L LT+++L N L P E+
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 101/237 (42%), Gaps = 38/237 (16%)
Query: 168 AFGRLRGLVSLNLSRNLLEAMPDSIAG---LQKLEELDVSSNLLQS-------LPDSIGL 217
+ G GL LN+S N L+ P ++G L LE LD+S+N + L D G
Sbjct: 121 SLGSCSGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 218 L-------------------LNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP 258
L +NL+ L+VS N +T + CS+L LD S N L
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239
Query: 259 TNIGYGLLNLERLSIKLNKL-RTFPPSICEMRSLKYLDAHFNELHG-LPRAI-GKLTRLE 315
+ L+ L+I N+ PP ++SL+YL N+ G +P + G L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 316 VLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA-LP-DTFFRLENLTKLNLDQN 370
L+LS N + +P G L L LS+N LP DT ++ L L+L N
Sbjct: 298 GLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 123/263 (46%), Gaps = 22/263 (8%)
Query: 171 RLRGLVSLNLSRNLLEA-MPDSIAGLQ-KLEELDVSSNLLQS--LPDSIGLLLN----LK 222
++RGL L+LS N +P+S+ L L LD+SSN LP+ L N L+
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN---LCQNPKNTLQ 394
Query: 223 VLNVSGNKL-NTLPESIARCSSLVELDASFNNLV-CLPTNIGYGLLNLERLSIKLNKLRT 280
L + N +P +++ CS LV L SFN L +P+++G L L L + LN L
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEG 453
Query: 281 -FPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLI 337
P + +++L+ L FN+L G +P + T L ++LS+ N LT E+P+ IG L
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN--NRLTGEIPKWIGRLE 511
Query: 338 NLRELDLSNNQIRA-LPDTFFRLENLTKLNLDQNPL--VIPPMEIVNKGVEAVKEFMAKR 394
NL L LSNN +P +L L+L+ N IP G A KR
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 395 WDGIIAEAQQKSILEANKQQQAQ 417
+ I + +K A + Q
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQ 594
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 116/268 (43%), Gaps = 55/268 (20%)
Query: 165 LPEAFGRLRGLVSLNLSRNLLEA-MPDSIAGLQKLEELDVSSNLLQS-LPDSIGLLLNLK 222
+P+ ++ L +L L N L +P ++ L + +S+N L +P IG L NL
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 223 VLNVSGNKLN-TLPESIARCSSLVELD------------ASFNNLVCLPTNIGYG----- 264
+L +S N + +P + C SL+ LD A F + N G
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Query: 265 ---------------LLNLERL-SIKLNKLRTFPPSICEMR--------------SLKYL 294
LL + + S +LN+L T P R S+ +L
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 295 DAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLINLRELDLSNNQIRA- 351
D +N L G +P+ IG + L +LNL N D++ +P+ +GDL L LDLS+N++
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHN--DISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEI 379
+P L LT+++L N L P E+
Sbjct: 693 IPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 101/237 (42%), Gaps = 38/237 (16%)
Query: 168 AFGRLRGLVSLNLSRNLLEAMPDSIAG---LQKLEELDVSSNLLQS-------LPDSIGL 217
+ G GL LN+S N L+ P ++G L LE LD+S+N + L D G
Sbjct: 118 SLGSCSGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 218 L-------------------LNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP 258
L +NL+ L+VS N +T + CS+L LD S N L
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 236
Query: 259 TNIGYGLLNLERLSIKLNKL-RTFPPSICEMRSLKYLDAHFNELHG-LPRAI-GKLTRLE 315
+ L+ L+I N+ PP ++SL+YL N+ G +P + G L
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 316 VLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA-LP-DTFFRLENLTKLNLDQN 370
L+LS N + +P G L L LS+N LP DT ++ L L+L N
Sbjct: 295 GLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 126/267 (47%), Gaps = 51/267 (19%)
Query: 119 EMLDRVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSL 178
E L + +S +++DV+ + +K L + + E + + QL+ LPE L L ++
Sbjct: 144 EKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL--EFIAAGNNQLEELPE-LQNLPFLTAI 200
Query: 179 NLSRNLLEAMPD-------SIAGLQKLEELD------------VSSNLLQSLPDSIGLLL 219
N L+ +PD +AG LEEL +NLL++LPD L
Sbjct: 201 YADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD---LPP 257
Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDAS---FNNLVCLPTNIGYGLLNLERLSIKLN 276
+L+ LNV N L LPE SL LD S F+ L LP N+ Y L+ N
Sbjct: 258 SLEALNVRDNYLTDLPE---LPQSLTFLDVSENIFSGLSELPPNLYY-------LNASSN 307
Query: 277 KLRTFPPSICEM-RSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD 335
++R S+C++ SL+ L+ N+L LP +L R L ++FN L E+PE
Sbjct: 308 EIR----SLCDLPPSLEELNVSNNKLIELPALPPRLER-----LIASFNHLAEVPELPQ- 357
Query: 336 LINLRELDLSNNQIRALPDTFFRLENL 362
NL++L + N +R PD +E+L
Sbjct: 358 --NLKQLHVEYNPLREFPDIPESVEDL 382
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 201 LDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLN---TLPESIARCSSLVELDASFNNLVC 256
L++ SN LQSLP + L L L++S N L+ +S +SL LD SFN ++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 257 LPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLD-AHFNELHGLPRAIGKLTR 313
+ +N GL LE L + + L+ +R+L YLD +H + L+
Sbjct: 93 MSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQN 370
LEVL ++ N LP+ +L NL LDLS Q+ L P F L +L LN+ N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 152 VETVDLADRQLKLLPE--AFGRLRGLVSLNLSRNLLEAMPDSIA-GLQKLEELDVSSNLL 208
+E +D LK + E F LR L+ L++S + I GL LE L ++ N
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 209 QS--LPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGL 265
Q LPD L NL L++S +L L P + SSL L+ S NN L T Y
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKC 221
Query: 266 LN-LERLSIKLNKLRT--------FPPSI 285
LN L+ L LN + T FP S+
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSL 250
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDA 296
+RCS S E+ + L +PT I + RL ++ NKL++ P + + + L L
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVPTGIPS---SATRLELESNKLQSLPHGVFDKLTQLTKLSL 59
Query: 297 HFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPD 354
N++ LP + KLT+L +L L N L LP + D L L+EL L NQ++++PD
Sbjct: 60 SQNQIQSLPDGVFDKLTKLTILYLHEN--KLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117
Query: 355 TFF-RLENLTKLNLDQNP 371
F RL +L K+ L NP
Sbjct: 118 GIFDRLTSLQKIWLHTNP 135
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 155 VDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLP 212
++L +L+ LP F +L L L+LS+N ++++PD + L KL L + N LQSLP
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 213 DSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGY 263
+ + L LK L + N+L ++P+ I R +SL ++ N C I Y
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 303 GLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLE 360
G+P + TRLE+ N L LP + D L L +L LS NQI++LPD F +L
Sbjct: 25 GIPSSA---TRLEL-----ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76
Query: 361 NLTKLNLDQNPLVIPPMEIVNK 382
LT L L +N L P + +K
Sbjct: 77 KLTILYLHENKLQSLPNGVFDK 98
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 265 LLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSN 322
L+NL+ L + N+L P + + + L LD N+L LP A+ +L L+ L + N
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 323 FNDLTELPETIGDLINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPLVIPPMEIVN 381
LTELP I L +L L L NQ++++P F RL +LT L NP +I+
Sbjct: 123 --KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMY 180
Query: 382 -KGVEAVKEFMAKRWDG 397
+ A +A RWDG
Sbjct: 181 LRNWVADHTSIAMRWDG 197
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 267 NLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFN 324
N + L + N++ P + + + +LK L N+L LP + LT+L VL+L +N
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-- 98
Query: 325 DLTELPETIGD-LINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKG 383
LT LP + D L++L+EL + N++ LP RL +LT L LDQN L P ++
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 384 VEAVKEFM-AKRWD 396
++ WD
Sbjct: 159 SSLTHAYLFGNPWD 172
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 157 LADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPDSIAG-LQKLEELDVSSNLLQSLPDS 214
L QL LP F L L L+L N L +P ++ L L+EL + N L LP
Sbjct: 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG 130
Query: 215 IGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGY 263
I L +L L + N+L ++P + R SSL N C +I Y
Sbjct: 131 IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMY 180
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
L+LS NLL S+A L +L +L++ L L G L L L++S N+L +L
Sbjct: 36 LHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSL 92
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
P +L LD SFN L LP GL L+ L +K N+L+T PP
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 141
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
GL KL +L + N NDLTELP + L NL L L N + +P
Sbjct: 142 --------GLLTPTPKLEKLSLAN-----NDLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
FF L L NP +
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSG 228
G L L +L+LS N L+++P L L LDVS N L SLP ++ L L+ L + G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 229 NKLNTLPESIARCSSLVE-LDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE 287
N+L TLP + + +E L + N+L LP + GL NL+ L ++ N L T P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 288 MRSLKYLDAHFN 299
L + H N
Sbjct: 194 SHLLPFAFLHGN 205
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
TRL LNL +LT+L + G L L LDLS+NQ+++LP L LT L++ N
Sbjct: 55 TRLTQLNLDRC--ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 372 LVIPPMEIVNKGVEAVKEFMAK 393
L P+ + +G+ ++E K
Sbjct: 112 LTSLPLGAL-RGLGELQELYLK 132
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 28/211 (13%)
Query: 174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
GL+ L++ N L +P +GL KL + N L SLP L L+ L+VS N+L +
Sbjct: 102 GLLELSIFSNPLTHLPALPSGLCKLW---IFGNQLTSLPV---LPPGLQELSVSDNQLAS 155
Query: 234 LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKY 293
LP A S L +L A N L LP + GL + LS+ N+L + P E+ L
Sbjct: 156 LP---ALPSELCKLWAYNNQLTSLPM-LPSGL---QELSVSDNQLASLPTLPSELYKLWA 208
Query: 294 LDAHFNELHGLPRAI-------GKLTRLEVL-----NLSSNFNDLTELPETIGDLINLRE 341
+ L LP + +LT L VL L + N LT LP L++L
Sbjct: 209 YNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSL-- 266
Query: 342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
+ NQ+ LP++ L + T +NL+ NPL
Sbjct: 267 -SVYRNQLTRLPESLIHLSSETTVNLEGNPL 296
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 155 VDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSL 211
V+ RQL LP + L+LS NLL S+A L +L +L++ L L
Sbjct: 15 VNCDKRQLTALPPDLPK--DTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL 70
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
G L L L++S N+L +LP +L LD SFN L LP GL L+ L
Sbjct: 71 -QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
+K N+L+T PP GL KL +L + N N LTELP
Sbjct: 130 YLKGNELKTLPP-------------------GLLTPTPKLEKLSLAN-----NQLTELPA 165
Query: 332 T-IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374
+ L NL L L N + +P FF L L NP +
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
TRL LNL +LT+L + G L L LDLS+NQ+++LP L LT L++ N
Sbjct: 55 TRLTQLNLDRC--ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 372 LVIPPMEIVNKGVEAVKEFMAK 393
L P+ + +G+ ++E K
Sbjct: 112 LTSLPLGAL-RGLGELQELYLK 132
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 155 VDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSL 211
V+ RQL LP + L+LS NLL S+A L +L +L++ L L
Sbjct: 15 VNCDKRQLTALPPDLPK--DTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL 70
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
G L L L++S N+L +LP +L LD SFN L LP GL L+ L
Sbjct: 71 -QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
+K N+L+T PP GL KL +L + N N LTELP
Sbjct: 130 YLKGNELKTLPP-------------------GLLTPTPKLEKLSLAN-----NQLTELPA 165
Query: 332 T-IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374
+ L NL L L N + +P FF L L NP +
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
TRL LNL +LT+L + G L L LDLS+NQ+++LP L LT L++ N
Sbjct: 55 TRLTQLNLDRC--ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 372 LVIPPMEIVNKGVEAVKEFMAK 393
L P+ + +G+ ++E K
Sbjct: 112 LTSLPLGAL-RGLGELQELYLK 132
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 94/221 (42%), Gaps = 33/221 (14%)
Query: 155 VDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSL 211
V+ RQL LP + L+LS NLL S+A L +L +L++ L L
Sbjct: 15 VNCDKRQLTALPPDLPK--DTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL 70
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
G L L L++S N+L +LP +L LD SFN L LP GL L+ L
Sbjct: 71 -QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
+K N+L+T PP GL KL +L + N N LTELP
Sbjct: 130 YLKGNELKTLPP-------------------GLLTPTPKLEKLSLAN-----NQLTELPA 165
Query: 332 T-IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
+ L NL L L N + +P FF L L NP
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
TRL LNL +LT+L + G L L LDLS+NQ+++LP L LT L++ N
Sbjct: 55 TRLTQLNLDRC--ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 372 LVIPPMEIVNKGVEAVKEFMAK 393
L P+ + +G+ ++E K
Sbjct: 112 LTSLPLGAL-RGLGELQELYLK 132
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 155 VDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSL 211
V+ RQL LP + L+LS NLL S+A L +L +L++ L L
Sbjct: 15 VNCDKRQLTALPPDLPK--DTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL 70
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
G L L L++S N+L +LP +L LD SFN L LP GL L+ L
Sbjct: 71 -QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
+K N+L+T PP GL KL +L + N N LTELP
Sbjct: 130 YLKGNELKTLPP-------------------GLLTPTPKLEKLSLAN-----NQLTELPA 165
Query: 332 T-IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374
+ L NL L L N + +P FF L L NP +
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
TRL LNL +LT+L + G L L LDLS+NQ+++LP L LT L++ N
Sbjct: 55 TRLTQLNLDRC--ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 372 LVIPPMEIVNKGVEAVKEFMAK 393
L P+ + +G+ ++E K
Sbjct: 112 LTSLPLGAL-RGLGELQELYLK 132
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
L+LS NLL S+A L +L +L++ L L G L L L++S N+L +L
Sbjct: 36 LHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSL 92
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
P +L LD SFN L LP GL L+ L +K N+L+T PP
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 141
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
GL KL +L + N N+LTELP + L NL L L N + +P
Sbjct: 142 --------GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
FF L L NP +
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSG 228
G L L +L+LS N L+++P L L LDVS N L SLP ++ L L+ L + G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 229 NKLNTLPESIARCSSLVE-LDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE 287
N+L TLP + + +E L + NNL LP + GL NL+ L ++ N L T P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 288 MRSLKYLDAHFN 299
L + H N
Sbjct: 194 SHLLPFAFLHGN 205
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
TRL LNL +LT+L + G L L LDLS+NQ+++LP L LT L++ N
Sbjct: 55 TRLTQLNLDRA--ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 372 LVIPPMEIVNKGVEAVKEFMAK 393
L P+ + +G+ ++E K
Sbjct: 112 LTSLPLGAL-RGLGELQELYLK 132
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
L+LS NLL S+A L +L +L++ L L G L L L++S N+L +L
Sbjct: 36 LHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSL 92
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
P +L LD SFN L LP GL L+ L +K N+L+T PP
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 141
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
GL KL +L + N N+LTELP + L NL L L N + +P
Sbjct: 142 --------GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
FF L L NP +
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSG 228
G L L +L+LS N L+++P L L LDVS N L SLP ++ L L+ L + G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 229 NKLNTLPESIARCSSLVE-LDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE 287
N+L TLP + + +E L + NNL LP + GL NL+ L ++ N L T P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 288 MRSLKYLDAHFN 299
L + H N
Sbjct: 194 SHLLPFAFLHGN 205
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
TRL LNL +LT+L + G L L LDLS+NQ+++LP L LT L++ N
Sbjct: 55 TRLTQLNLDRC--ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 372 LVIPPMEIVNKGVEAVKEFMAK 393
L P+ + +G+ ++E K
Sbjct: 112 LTSLPLGAL-RGLGELQELYLK 132
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
L+LS NLL S+A L +L +L++ L L G L L L++S N+L +L
Sbjct: 36 LHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSL 92
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
P +L LD SFN L LP GL L+ L +K N+L+T PP
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 141
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
GL KL +L + N N+LTELP + L NL L L N + +P
Sbjct: 142 --------GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
FF L L NP +
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSG 228
G L L +L+LS N L+++P L L LDVS N L SLP ++ L L+ L + G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 229 NKLNTLPESIARCSSLVE-LDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE 287
N+L TLP + + +E L + NNL LP + GL NL+ L ++ N L T P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 288 MRSLKYLDAHFN 299
L + H N
Sbjct: 194 SHLLPFAFLHGN 205
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
TRL LNL +LT+L + G L L LDLS+NQ+++LP L LT L++ N
Sbjct: 55 TRLTQLNLDRA--ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 372 LVIPPMEIVNKGVEAVKEFMAK 393
L P+ + +G+ ++E K
Sbjct: 112 LTSLPLGAL-RGLGELQELYLK 132
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
L+LS NLL S+A L +L +L++ L L G L L L++S N+L +L
Sbjct: 36 LHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSL 92
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
P +L LD SFN L LP GL L+ L +K N+L+T PP
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 141
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
GL KL +L + N N+LTELP + L NL L L N + +P
Sbjct: 142 --------GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
FF L L NP +
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSG 228
G L L +L+LS N L+++P L L LDVS N L SLP ++ L L+ L + G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 229 NKLNTLPESIARCSSLVE-LDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE 287
N+L TLP + + +E L + NNL LP + GL NL+ L ++ N L T P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 288 MRSLKYLDAHFN 299
L + H N
Sbjct: 194 SHLLPFAFLHGN 205
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
TRL LNL +LT+L + G L L LDLS+NQ+++LP L LT L++ N
Sbjct: 55 TRLTQLNLDRA--ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 372 LVIPPMEIVNKGVEAVKEFMAK 393
L P+ + +G+ ++E K
Sbjct: 112 LTSLPLGAL-RGLGELQELYLK 132
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
L+LS NLL S+A L +L +L++ L L G L L L++S N+L +L
Sbjct: 37 LHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSL 93
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
P +L LD SFN L LP GL L+ L +K N+L+T PP
Sbjct: 94 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 142
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
GL KL +L + N N+LTELP + L NL L L N + +P
Sbjct: 143 --------GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
FF L L NP +
Sbjct: 190 KGFFGSHLLPFAFLHGNPWLC 210
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSG 228
G L L +L+LS N L+++P L L LDVS N L SLP ++ L L+ L + G
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 229 NKLNTLPESIARCSSLVE-LDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE 287
N+L TLP + + +E L + NNL LP + GL NL+ L ++ N L T P
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 194
Query: 288 MRSLKYLDAHFN 299
L + H N
Sbjct: 195 SHLLPFAFLHGN 206
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
TRL LNL +LT+L + G L L LDLS+NQ+++LP L LT L++ N
Sbjct: 56 TRLTQLNLDRC--ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 112
Query: 372 LVIPPMEIVNKGVEAVKEFMAK 393
L P+ + +G+ ++E K
Sbjct: 113 LTSLPLGAL-RGLGELQELYLK 133
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 220 NLKVLNVSGNKLN---TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN 276
+L+ L++S N L+ +S +SL LD SFN ++ + +N GL LE L + +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHS 406
Query: 277 KLRTFP--PSICEMRSLKYLD-AHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETI 333
L+ +R+L YLD +H + L+ LEVL ++ N LP+
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 334 GDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMA 392
+L NL LDLS Q+ L P F L +L LN+ N L P I ++ K ++
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
Query: 393 KR-WD 396
WD
Sbjct: 527 TNPWD 531
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 161 QLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDSI 215
Q LP+ F LR L L+LS+ LE + P + L L+ L+++SN L+S+PD I
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL 367
IG L L+ LN++ N +LPE +L NL LDLS+N+I+++ T R+ + L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 368 DQNPLVIPPMEIVNKGVEAVKE 389
L + PM + G A KE
Sbjct: 180 LSLDLSLNPMNFIQPG--AFKE 199
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 170 GRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQSL 211
G L+ L LN++ NL+++ +P+ + L LE LD+SSN +QS+
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 155 VDLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAMPDSI----AGLQKL 198
+DL+ QL +L P AF L L LN++ N L+++PD I LQK+
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 9/187 (4%)
Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIAR-CSSLVELDASFNNLVCL 257
+E+D L S+P G+ + + L++ L TL ++ R + L L+ +N L L
Sbjct: 17 KEVDCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74
Query: 258 PTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLE 315
+ L L L + N+L + P + + + L L N+L LP + +LT+L+
Sbjct: 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134
Query: 316 VLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPLV 373
L L N N L +P D L NL+ L LS NQ++++P F RL L + L N
Sbjct: 135 ELRL--NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Query: 374 IPPMEIV 380
EI+
Sbjct: 193 CSRCEIL 199
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 6/148 (4%)
Query: 141 KILQEAESGVVVET--VDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPDSI-AGLQ 196
K L SG+ +T +DL L L +A F L L LNL N L+ + + L
Sbjct: 24 KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 197 KLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNL 254
+L L +++N L SLP + L L L + GN+L +LP + R + L EL + N L
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 255 VCLPTNIGYGLLNLERLSIKLNKLRTFP 282
+P L NL+ LS+ N+L++ P
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 30/223 (13%)
Query: 178 LNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNKLNTLP 235
LNL N ++ + D+ L+ LE L +S NL++ + + L +L L + N+L T+P
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 236 -ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI-KLNKLRTFPPSICE-MRSLK 292
++ S L EL N + +P+ + +L RL + +L +L + E + +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 293 YLDAHFNELHGLPRAIGKLTRLEVLNLSSN---------FNDLTELPE------------ 331
YL+ L +P + L RLE L LS N F LT L +
Sbjct: 160 YLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 332 --TIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNP 371
DL +L EL+LS+N + +LP D F L L +++L+ NP
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 155 VDLAD-RQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL- 211
+DL + ++L+ + EA F L L LNL L+ +P+ + L +LEEL++S N L +
Sbjct: 136 LDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIR 194
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
P S L +L+ L + ++ T+ + SL EL+ S NNL+ LP ++ L LER
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLER 254
Query: 271 LSIKLN 276
+ + N
Sbjct: 255 VHLNHN 260
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 30/223 (13%)
Query: 178 LNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNKLNTLP 235
LNL N ++ + D+ L+ LE L +S NL++ + + L +L L + N+L T+P
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 236 -ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI-KLNKLRTFPPSICE-MRSLK 292
++ S L EL N + +P+ + +L RL + +L +L + E + +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 293 YLDAHFNELHGLPRAIGKLTRLEVLNLSSN---------FNDLTELPE------------ 331
YL+ L +P + L RLE L LS N F LT L +
Sbjct: 160 YLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 332 --TIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNP 371
DL +L EL+LS+N + +LP D F L L +++L+ NP
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 155 VDLAD-RQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL- 211
+DL + ++L+ + EA F L L LNL L+ +P+ + L +LEEL++S N L +
Sbjct: 136 LDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIR 194
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
P S L +L+ L + ++ T+ + SL EL+ S NNL+ LP ++ L LER
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLER 254
Query: 271 LSIKLN 276
+ + N
Sbjct: 255 VHLNHN 260
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
Query: 220 NLKVLNVSGNKLN---TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN 276
+L+ L++S N L+ +S +SL LD SFN ++ + +N GL LE L + +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHS 406
Query: 277 KLRTFP--PSICEMRSLKYLD-AHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETI 333
L+ +R+L YLD +H + L+ LEVL ++ N LP+
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 334 GDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQN 370
+L NL LDLS Q+ L P F L +L LN+ N
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 152 VETVDLADRQLKLLPE--AFGRLRGLVSLNLSRNLLEAMPDSIA-GLQKLEELDVSSNLL 208
+E +D LK + E F LR L+ L++S + I GL LE L ++ N
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 209 QS--LPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGL 265
Q LPD L NL L++S +L L P + SSL L+ S NN L T Y
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKC 516
Query: 266 LN-LERLSIKLNKLRT--------FPPSI 285
LN L+ L LN + T FP S+
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL 367
IG L L+ LN++ N +LPE +L NL LDLS+N+I+++ T R+ + L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 368 DQNPLVIPPMEIVNKGVEAVKE 389
L + PM + G A KE
Sbjct: 180 LSLDLSLNPMNFIQPG--AFKE 199
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 170 GRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQSL 211
G L+ L LN++ NL+++ +P+ + L LE LD+SSN +QS+
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 243 SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLD-AHFN 299
SL LD SFN ++ + +N GL LE L + + L+ +R+L YLD +H +
Sbjct: 398 SLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456
Query: 300 ELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL-PDTFFR 358
L+ LEVL ++ N LP+ +L NL LDLS Q+ L P F
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 359 LENLTKLNLDQN 370
L +L LN+ N
Sbjct: 517 LSSLQVLNMSHN 528
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Query: 125 YDSVSAELVDVNEDVVKILQEAESGV-VVETVDLADRQLKLLPE--AFGRLRGLVSLNLS 181
+ ++S + +D++ + V + G+ +E +D LK + E F LR L+ L++S
Sbjct: 394 FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453
Query: 182 RNLLEAMPDSIA-GLQKLEELDVSSNLLQS--LPDSIGLLLNLKVLNVSGNKLNTL-PES 237
+ I GL LE L ++ N Q LPD L NL L++S +L L P +
Sbjct: 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513
Query: 238 IARCSSLVELDASFNNLVCLPTNIGYGLLN-LERLSIKLNKLRT 280
SSL L+ S NN L T Y LN L+ L LN + T
Sbjct: 514 FNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMT 556
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL 367
IG L L+ LN++ N +LPE +L NL LDLS+N+I+++ T R+ + L
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203
Query: 368 DQNPLVIPPMEIVNKGVEAVKE 389
L + PM + G A KE
Sbjct: 204 LSLDLSLNPMNFIQPG--AFKE 223
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 170 GRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQSL 211
G L+ L LN++ NL+++ +P+ + L LE LD+SSN +QS+
Sbjct: 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 6/148 (4%)
Query: 141 KILQEAESGVVVET--VDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPDSI-AGLQ 196
K L SG+ +T +DL L L +A F L L LNL N L+ + + L
Sbjct: 24 KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 197 KLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNL 254
+L L +++N L SLP + L L L + GN+L +LP + R + L EL + N L
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 255 VCLPTNIGYGLLNLERLSIKLNKLRTFP 282
+P L NL+ LS+ N+L++ P
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 9/187 (4%)
Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIAR-CSSLVELDASFNNLVCL 257
+E+D L S+P G+ + + L++ L TL ++ R + L L+ +N L L
Sbjct: 17 KEVDCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74
Query: 258 PTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLE 315
+ L L L + N+L + P + + + L L N+L LP + +LT+L+
Sbjct: 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134
Query: 316 VLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPLV 373
L L N N L +P D L NL+ L LS NQ++++P F RL L + L N
Sbjct: 135 ELRL--NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Query: 374 IPPMEIV 380
E +
Sbjct: 193 CSRCETL 199
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 110/233 (47%), Gaps = 32/233 (13%)
Query: 150 VVVETVDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNL 207
+V+E DL+ LP F L +L++S N LE + D + L+ L +SSN
Sbjct: 128 LVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Query: 208 LQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFN--NLVCLPTNIGYGL 265
L + + L+ +L NVS N L+TL IA + ELDAS N N+V P N+ +
Sbjct: 183 LTHV--DLSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTI 236
Query: 266 LNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFN 324
L L+ ++ P + E+ D +NEL + K+ RLE L +S+N
Sbjct: 237 LKLQHNNLTDTAWLLNYPGLVEV------DLSYNELEKIMYHPFVKMQRLERLYISNN-- 288
Query: 325 DLTELPETIGDLINLRELDLSNNQI----RALPDTFFRLENLTKLNLDQNPLV 373
L L + L+ LDLS+N + R P F RLENL LD N +V
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLY---LDHNSIV 337
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 35/227 (15%)
Query: 178 LNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTLP 235
L+L +N ++ + D A LEEL+++ N++ ++ P + L NL+ L + N+L +P
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 236 ESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI--------------KLNKLRT 280
+ S+L +LD S N +V L + L NL+ L + LN L
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156
Query: 281 FPPSICEMRSLKYLDAHFNELHGL--------------PRAIGKLTRLEVLNLSSNFNDL 326
C + S+ + LHGL + +L RL+VL +S
Sbjct: 157 LTLEKCNLTSIP--TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 327 TELPETIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPL 372
T P + L NL L +++ + A+P R L L LNL NP+
Sbjct: 215 TMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 178 LNLSRNLLEAMPDSIAG-LQKLEELD-VSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP 235
LNLS N + + S+ L +L+E+ V L P + L L+VLNVSGN+L TL
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
Query: 236 ESI 238
ES+
Sbjct: 313 ESV 315
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 169 FGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS 227
F L +L++S N LE + D + L+ L +SSN L + + L+ +L NVS
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVS 194
Query: 228 GNKLNTLPESIARCSSLVELDASFN--NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSI 285
N L+TL IA + ELDAS N N+V P N+ +L L+ ++ P +
Sbjct: 195 YNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL 250
Query: 286 CEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDL 344
E+ D +NEL + K+ RLE L +S+N L L + L+ LDL
Sbjct: 251 VEV------DLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDL 302
Query: 345 SNNQI----RALPDTFFRLENLTKLNLDQNPLV 373
S+N + R P F RLENL LD N +V
Sbjct: 303 SHNHLLHVERNQPQ-FDRLENLY---LDHNSIV 331
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 77/183 (42%), Gaps = 10/183 (5%)
Query: 143 LQEAESGVVVETVDLADRQL---KLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLE 199
L+ E T L + QL +L + L N+S NLL + IA +E
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA----VE 208
Query: 200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPT 259
ELD S N + + + + L +L + N L T + LVE+D S+N L +
Sbjct: 209 ELDASHNSINVVRGPVNV--ELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMY 265
Query: 260 NIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNL 319
+ + LERL I N+L + +LK LD N L + R + RLE L L
Sbjct: 266 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 325
Query: 320 SSN 322
N
Sbjct: 326 DHN 328
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 51/197 (25%)
Query: 248 DASFNNLVCLPTNIGYGLLN-------------------LERLSIKLNKLRTFPPSIC-- 286
D F ++VC P+ + LN L+ L ++ N L+ F
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 287 -EMRSLKYLDAHFNEL--HGLPRAIGKLTRLEVLNLSSNF-------------------- 323
M SL+ LD N L H R + VLNLSSN
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHN 459
Query: 324 NDLTELPETIGDLINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPLVIPPMEIVNK 382
N + +P+ + L L+EL++++NQ++++PD F RL +L + L N P +
Sbjct: 460 NRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN-----PWDCTCP 514
Query: 383 GVEAVKEFMAKRWDGII 399
G+ + E++ K G++
Sbjct: 515 GIRYLSEWINKH-SGVV 530
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 222 KVLNVSGNKLNTL--PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
K L++S N ++ L P+ I+ S L L S N + L ++ +LE L + N+L+
Sbjct: 55 KALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 280 TFPPSICEMRSLKYLDAHFNELHGLP--RAIGKLTRLEVLNLS-SNFNDLTELPETIGDL 336
S C M SL++LD FN+ LP + G LT+L L LS + F L LP + L
Sbjct: 114 NI--SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP--VAHL 169
Query: 337 -INLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
++ LDL + I+ ++ N T L+L +P
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 178 LNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSI 215
L+L N + ++P + LQ L+EL+V+SN L+S+PD +
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 17/96 (17%)
Query: 152 VETVDLADRQLKLLPEAFGRL----RGLVSLNLSRNLL-----EAMPDSIAGLQKLEELD 202
+ET+D++ L A+ R ++ LNLS N+L +P K++ LD
Sbjct: 405 LETLDVSLNSLN--SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP------KVKVLD 456
Query: 203 VSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESI 238
+ +N + S+P + L L+ LNV+ N+L ++P+ +
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 41/261 (15%)
Query: 151 VVETVDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLL 208
V+++DL++ ++ + + R L +L L+ N + + DS + L LE LD+S N L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 209 QSLPDS-IGLLLNLKVLNVSGNKLNTLPESIARCSSLVELD----ASFNNLVCLPTNIGY 263
+L S L +L LN+ GN TL E+ + S L +L + + +
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 264 GLLNLERLSIKLNKLRTFPPS-----------ICEMR-----------------SLKYLD 295
GL LE L I + L+++ P I M+ L+ D
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231
Query: 296 AHFNELHGLPRAIGK----LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
+ H + G+ + + N+ L ++ + + + L EL+ S NQ+++
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291
Query: 352 LPDTFF-RLENLTKLNLDQNP 371
+PD F RL +L K+ L NP
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNP 312
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 299 NELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFR 358
N L LP I L+ L VL+LS N LT LP +G L+ +N + LP F
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHN--RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGN 314
Query: 359 LENLTKLNLDQNPL 372
L NL L ++ NPL
Sbjct: 315 LCNLQFLGVEGNPL 328
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 198 LEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCL 257
L L ++ N L LP I L NL+VL++S N+L +LP + C L N + L
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 258 PTNIGYGLLNLERLSIKLNKL 278
P G L NL+ L ++ N L
Sbjct: 309 PWEFG-NLCNLQFLGVEGNPL 328
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%)
Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
+DL++ Q+ + + L L L+ N L +P I L L LD+S N L SLP
Sbjct: 227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286
Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSL 244
+G LK N + TLP +L
Sbjct: 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNL 318
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 311 LTRLEVLNLSSNF-------------NDLTELPETIGDLINLRELDLSNNQIRALPDTFF 357
L+ L++ N+S+N N LTELP I +L NLR LDLS+N++ +LP
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290
Query: 358 RLENLTKLNLDQNPLVIPPMEIVN 381
L N + P E N
Sbjct: 291 SCFQLKYFYFFDNMVTTLPWEFGN 314
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
LDLSN QI + F+ + LT+L L+ N L P EI N
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKN 268
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 265 LLNLERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF 323
L L+R +L P ++ +MR+L +L+ N L LE + SN
Sbjct: 122 LHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSN- 180
Query: 324 NDLTELPETI-GDLINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
L ++P I G + L++L+L++NQ++++PD F RL +L K+ L NP
Sbjct: 181 -KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNP 229
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 169 FGRLRGLVSLNLSRNLLEAMPDSIAG-LQKLEELDVSSNLLQSLPDSI 215
F L L S+ N L MP I G + KL++L+++SN L+S+PD I
Sbjct: 166 FDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 167 EAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN 225
+ RL GL + L +P ++ ++ L L++ +N+ + L NL+ +
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIE 176
Query: 226 VSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS 284
NKL +P I + L +L+ + N L +P I L +L+++ + N P
Sbjct: 177 FGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN------PW 230
Query: 285 ICEMRSLKYLDAHFNE 300
C + YL N+
Sbjct: 231 DCSCPRIDYLSRWLNK 246
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 152 VETVDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPDSI----AGLQKL 198
+E+++ +L+ +P FG++ L LNL+ N L+++PD I LQK+
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKI 223
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 160 RQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL 219
R ++ E L+ L SL++SRN MPDS +K+ L++SS ++ + I
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--Q 431
Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
L+VL+VS N L++ + R L EL S N L LP + +L + + I N+L+
Sbjct: 432 TLEVLDVSNNNLDSFSLFLPR---LQELYISRNKLKTLPDASLFPVLLV--MKISRNQLK 486
Query: 280 TFPPSICE-MRSLKYLDAHFN 299
+ P I + + SL+ + H N
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTN 507
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 27/127 (21%)
Query: 190 DSIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLNVSGNKLNTLPESIARCSSLVELD 248
D+ L LE LD+S N L SL S G L +LK LN+ GN TL +
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-----------VT 116
Query: 249 ASFNNLVCLPT-NIG-------------YGLLNLERLSIKLNKLRTF-PPSICEMRSLKY 293
+ F NL L T IG GL +L L IK LR + S+ +R + +
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176
Query: 294 LDAHFNE 300
L H +E
Sbjct: 177 LTLHLSE 183
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 290 SLKYLDAHFNEL----HGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLS 345
++K LD FN++ HG RA L +VL L S+ + E + L +L LDLS
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANL---QVLILKSSRINTIE-GDAFYSLGSLEHLDLS 82
Query: 346 NNQIRALPDTFFR-LENLTKLNLDQNP 371
+N + +L ++F L +L LNL NP
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 263 YGLL-NLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFN----ELHGLPRAIGKLTRLEV 316
Y LL ++R++++ +K+ P S + ++SL++LD N E G L+
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365
Query: 317 LNLSSN-FNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN----- 370
L LS N + + E + L NL LD+S N +PD+ E + LNL
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425
Query: 371 ----PLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEAN 411
P + +++ N +++ F+ + + I+ + K++ +A+
Sbjct: 426 KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDAS 470
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 242 SSLVELDASFNNLVCLPTNIGYGLL----NLERLSIKLNKLRTFP-PSICEMRSLKYLDA 296
+++ LD SFN + T IG+G L NL+ L +K +++ T + + SL++LD
Sbjct: 26 AAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 297 HFNELHGLPRA-IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN 346
N L L + G L+ L+ LNL N + +L NL+ L + N
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 92/197 (46%), Gaps = 38/197 (19%)
Query: 195 LQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNL 254
+ + EL ++ L SLPD L + VL ++ N L +LPE A SL LDA N L
Sbjct: 58 INQFSELQLNRLNLSSLPD--NLPPQITVLEITQNALISLPELPA---SLEYLDACDNRL 112
Query: 255 VCLPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLDAHFNELHGLPRAIGKLT 312
LP +L+ L + N+L P P++ L+Y++A N+L LP T
Sbjct: 113 STLPELPA----SLKHLDVDNNQLTXLPELPAL-----LEYINADNNQLTXLPELP---T 160
Query: 313 RLEVLNLSSN-FNDLTELPETIGDLINLRELDLSNNQIRALP------------DTFFRL 359
LEVL++ +N L ELPE+ L LD+S N + +LP + FFR
Sbjct: 161 SLEVLSVRNNQLTFLPELPES------LEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 360 ENLTKLNLDQNPLVIPP 376
++ +N L + P
Sbjct: 215 RENRITHIPENILSLDP 231
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 39/196 (19%)
Query: 178 LNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES 237
L +++N L ++P+ A LE LD N L +LP+ L +LK L+V N+L LPE
Sbjct: 85 LEITQNALISLPELPAS---LEYLDACDNRLSTLPE---LPASLKHLDVDNNQLTXLPE- 137
Query: 238 IARCSSLVE-LDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDA 296
+L+E ++A N L LP +LE LS++ N+L TF P + E SL+ LD
Sbjct: 138 ---LPALLEYINADNNQLTXLPE----LPTSLEVLSVRNNQL-TFLPELPE--SLEALDV 187
Query: 297 HFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTF 356
N L LP + + ++ ++ TE+ RE N+I +P+
Sbjct: 188 STNLLESLP----------AVPVRNHHSEETEI------FFRCRE-----NRITHIPENI 226
Query: 357 FRLENLTKLNLDQNPL 372
L+ + L+ NPL
Sbjct: 227 LSLDPTCTIILEDNPL 242
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQ 209
++E ++ + QL LPE L L N L +P+S LE LDVS+NLL+
Sbjct: 140 ALLEYINADNNQLTXLPELPTSLEVLSVRNNQLTFLPELPES------LEALDVSTNLLE 193
Query: 210 SLP 212
SLP
Sbjct: 194 SLP 196
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 268 LERLSIKLNKLRTFP--PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFND 325
++ + I N L+TFP S+ + + L L+ +N+L G A G +L LNL+ +N
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLA--YNQ 364
Query: 326 LTELPETI-GDLINLRELDLSNNQIRALPDTF 356
+TE+P G + L ++N+++ +P+ F
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 30/225 (13%)
Query: 162 LKLLPEA----FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP--DSI 215
LK LPE RG+ L ++ +A+ D+ G +K++ + + N L++ P S+
Sbjct: 269 LKALPEXQLINVACNRGISGEQL-KDDWQALADAPVG-EKIQIIYIGYNNLKTFPVETSL 326
Query: 216 GLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL 275
L L N+L + L L+ ++N + +P N +E LS
Sbjct: 327 QKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386
Query: 276 NKLRTFPPSICEMRSLKY---LDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
NKL+ + P+I + +S+ +D +NE+ + GK NF+ L P
Sbjct: 387 NKLK-YIPNIFDAKSVSVXSAIDFSYNEIGSVD---GK-----------NFDPLDPTPFK 431
Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLEN-LTKLNLDQNPLVIPP 376
IN+ ++LSNNQI P F + L+ +NL N L P
Sbjct: 432 ---GINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIP 473
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 53/269 (19%)
Query: 168 AFGRLRGLVSLNLSRNLLEAMPDSIAGL-QKLEELDVSSNLLQSLP-------------- 212
AFG L SLNL+ N + +P + G +++E L + N L+ +P
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAI 407
Query: 213 ----DSIGLL---------------LNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFN 252
+ IG + +N+ +N+S N+++ P E + S L ++ N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGN 467
Query: 253 NLVCLPTNI----GYGLLN---LERLSIKLNKLRTFPPSICEMRSLKYL---DAHFNELH 302
L +P N N L + ++ NKL +L YL D +N
Sbjct: 468 XLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF-RATTLPYLVGIDLSYNSFS 526
Query: 303 GLPRAIGKLTRLEVLNLSSNFN-----DLTELPETIGDLINLRELDLSNNQIRALPDTFF 357
P + L+ + + + L E PE I +L +L + +N IR + +
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI- 585
Query: 358 RLENLTKLNLDQNPLVIPPMEIVNKGVEA 386
N++ L++ NP + + V +EA
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYIEA 613
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 98/225 (43%), Gaps = 53/225 (23%)
Query: 178 LNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
L+LS N L + S +L+ LD+S +Q++ D + L +L L ++GN + +L
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 93
Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD 295
++ S L +S LV L TN+ L FP I +++LK L+
Sbjct: 94 -ALGAFSGL----SSLQKLVALETNLA--------------SLENFP--IGHLKTLKELN 132
Query: 296 AHFNELHG--LPRAIGKLTRLEVLNLSSN---------FNDLTELPETIGDL-------- 336
N + LP LT LE L+LSSN L ++P L
Sbjct: 133 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 192
Query: 337 ---------INLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
I L+EL L NQ++++PD F RL +L K+ L NP
Sbjct: 193 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 288 MRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNN 347
++ L L+ + L P IG L L+ LN++ N +LPE +L NL LDLS+N
Sbjct: 104 LQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Query: 348 QIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAK 393
+I+++ T R+ + L L + PM + G A KE K
Sbjct: 162 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--AFKEIRLK 205
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 170 GRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQSL 211
G L+ L LN++ NL+++ +P+ + L LE LD+SSN +QS+
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 160 RQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL 219
R ++ E L+ L SL++SRN MPDS +K+ L++SS ++ + I
Sbjct: 400 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--Q 457
Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
L+VL+VS N L++ + R L EL S N L LP + +L + + I N+L+
Sbjct: 458 TLEVLDVSNNNLDSFSLFLPR---LQELYISRNKLKTLPDASLFPVLLV--MKIASNQLK 512
Query: 280 TFPPSICE-MRSLKYLDAHFN 299
+ P I + + SL+ + H N
Sbjct: 513 SVPDGIFDRLTSLQKIWLHTN 533
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 39/199 (19%)
Query: 126 DSVSAELVDVNEDVVKILQEAESGVV--VETVDLADRQLKLLPEAFGRLRGLVSLNL--- 180
+S+S + V + + SG+ ++++DL+ ++ + G LR +L +
Sbjct: 26 ESLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYI--GHGDLRACANLQVLIL 83
Query: 181 --SR-NLLEAMPDSIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLNVSGNKLNTLPE 236
SR N +E D+ L LE LD+S N L SL S G L +LK LN+ GN TL
Sbjct: 84 KSSRINTIEG--DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG- 140
Query: 237 SIARCSSLVELDASFNNLVCLPT-NIG-------------YGLLNLERLSIKLNKLRTF- 281
+ + F NL L T IG GL +L L IK LR +
Sbjct: 141 ----------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 190
Query: 282 PPSICEMRSLKYLDAHFNE 300
S+ +R + +L H +E
Sbjct: 191 SQSLKSIRDIHHLTLHLSE 209
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 290 SLKYLDAHFNEL----HGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLS 345
++K LD FN++ HG RA L +VL L S+ + E + L +L LDLS
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANL---QVLILKSSRINTIE-GDAFYSLGSLEHLDLS 108
Query: 346 NNQIRALPDTFFR-LENLTKLNLDQNP 371
+N + +L ++F L +L LNL NP
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGNP 135
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 263 YGLL-NLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFN----ELHGLPRAIGKLTRLEV 316
Y LL ++R++++ +K+ P S + ++SL++LD N E G L+
Sbjct: 332 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 391
Query: 317 LNLSSN-FNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN----- 370
L LS N + + E + L NL LD+S N +PD+ E + LNL
Sbjct: 392 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 451
Query: 371 ----PLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEAN 411
P + +++ N +++ F+ + + I+ + K++ +A+
Sbjct: 452 KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDAS 496
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 242 SSLVELDASFNNLVCLPTNIGYGLL----NLERLSIKLNKLRTFP-PSICEMRSLKYLDA 296
+++ LD SFN + T IG+G L NL+ L +K +++ T + + SL++LD
Sbjct: 52 AAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 107
Query: 297 HFNELHGLPRA-IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN 346
N L L + G L+ L+ LNL N + +L NL+ L + N
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 158
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Query: 114 FKEAEEMLDRVYDSVSAELVDVNED-VVKILQEAESGVV-VETVDLADRQL-KLLPEAFG 170
FK+ + + ++ + D+++ + +L+ S +E + LA ++ K+ AF
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 171 RLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPDSIGLLL-NLKVLNVSG 228
L L+ LNLS+N L ++ + L KLE LD+S N +++L D L L NLK L +
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 229 NKLNTLPESIA-RCSSLVELDASFNNLVCLPTNIGY 263
N+L ++P+ I R +SL ++ N C I Y
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 306 RAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALPDTFF-RLENLT 363
R L +LEVL+LS +N + L ++ L NL+EL L NQ++++PD F RL +L
Sbjct: 341 RMFENLDKLEVLDLS--YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398
Query: 364 KLNLDQNP 371
K+ L NP
Sbjct: 399 KIWLHTNP 406
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 25/151 (16%)
Query: 152 VETVDLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQ 209
V+T DL+ ++ LL F L L L++N + + D + GL L +L++S N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 210 SLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
S+ + NL L V LD S+N++ L GL NL+
Sbjct: 337 SIDSR--MFENLDKLEV--------------------LDLSYNHIRALGDQSFLGLPNLK 374
Query: 270 RLSIKLNKLRTFPPSICE-MRSLKYLDAHFN 299
L++ N+L++ P I + + SL+ + H N
Sbjct: 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 36/195 (18%)
Query: 242 SSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL-------RTFPPSICEMRSLKYL 294
SSL+ L +N + L T GL NLE L++ L F P + SL+ L
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP----LTSLEML 134
Query: 295 DAHFNELHGLPRA--IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL 352
N + + A + R VL+L+ FN + + E DL+N +
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLT--FNKVKSICEE--DLLNFQGKHF-------- 182
Query: 353 PDTFFRLENLTKLNLDQ---------NPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQ 403
T RL ++T ++++ NP + ++ KE MAKR+ IA +
Sbjct: 183 --TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240
Query: 404 QKSILEANKQQQAQS 418
+S++ +N S
Sbjct: 241 IQSLILSNSYNMGSS 255
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 222 KVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT 280
K +++S N L L S + S L LD S + + +GL +L L + N +++
Sbjct: 30 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 89
Query: 281 FPP-SICEMRSLKYLDAHFNELHGLPRA-IGKLTRLEVLNLSSNFNDLTELPETIGDLIN 338
F P S + SL+ L A +L L IG+L L+ LN++ NF +LP +L N
Sbjct: 90 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 149
Query: 339 LRELDLSNNQIRAL 352
L +DLS N I+ +
Sbjct: 150 LVHVDLSYNYIQTI 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 53/225 (23%)
Query: 178 LNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
L+LS N L + S +L+ LD+S +Q++ D + L +L L ++GN + +L
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 93
Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD 295
++ S L +S LV + TN+ L FP I +++LK L+
Sbjct: 94 -ALGAFSGL----SSLQKLVAVETNLA--------------SLENFP--IGHLKTLKELN 132
Query: 296 AHFNELHG--LPRAIGKLTRLEVLNLSSN---------FNDLTELPETIGDL-------- 336
N + LP LT LE L+LSSN L ++P L
Sbjct: 133 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 192
Query: 337 ---------INLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
I L+EL L NQ++++PD F RL +L K+ L NP
Sbjct: 193 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL 367
IG L L+ LN++ N +LPE +L NL LDLS+N+I+++ T R+ + L
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 368 DQNPLVIPPMEIVNKGVEAVKEFMAK 393
L + PM + G A KE K
Sbjct: 182 LSLDLSLNPMNFIQPG--AFKEIRLK 205
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 170 GRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQSL 211
G L+ L LN++ NL+++ +P+ + L LE LD+SSN +QS+
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 53/225 (23%)
Query: 178 LNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
L+LS N L + S +L+ LD+S +Q++ D + L +L L ++GN + +L
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 92
Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD 295
++ S L +S LV + TN+ L FP I +++LK L+
Sbjct: 93 -ALGAFSGL----SSLQKLVAVETNLA--------------SLENFP--IGHLKTLKELN 131
Query: 296 AHFNELHG--LPRAIGKLTRLEVLNLSSN---------FNDLTELPETIGDL-------- 336
N + LP LT LE L+LSSN L ++P L
Sbjct: 132 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 191
Query: 337 ---------INLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
I L+EL L NQ++++PD F RL +L K+ L NP
Sbjct: 192 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL 367
IG L L+ LN++ N +LPE +L NL LDLS+N+I+++ T R+ + L
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 368 DQNPLVIPPMEIVNKGVEAVKEFMAK 393
L + PM + G A KE K
Sbjct: 181 LSLDLSLNPMNFIQPG--AFKEIRLK 204
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 170 GRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQSL 211
G L+ L LN++ NL+++ +P+ + L LE LD+SSN +QS+
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 222 KVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT 280
K +++S N L L S + S L LD S + + +GL +L L + N +++
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 281 FPP-SICEMRSLKYLDAHFNELHGLPRA-IGKLTRLEVLNLSSNFNDLTELPETIGDLIN 338
F P S + SL+ L A +L L IG+L L+ LN++ NF +LP +L N
Sbjct: 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154
Query: 339 LRELDLSNNQIRAL 352
L +DLS N I+ +
Sbjct: 155 LVHVDLSYNYIQTI 168
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 155 VDLAD-RQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL- 211
+DL + ++L + E AF L L LNL+ L +P+ + L KL+ELD+S N L ++
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIR 223
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
P S L++L+ L + +++ + + SLVE++ + NNL LP ++ L +LER
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283
Query: 271 LSIKLN 276
+ + N
Sbjct: 284 IHLHHN 289
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 208 LQSLPDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLL 266
L+ +PD G+ N ++LN+ N++ + S L L S N++ + GL
Sbjct: 55 LREVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112
Query: 267 NLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELHGLPRA------------IGKLTR 313
NL L + N+L T P + + LK L N + +P +G+L R
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172
Query: 314 LEVLN------------LSSNFNDLTELPETIGDLINLRELDLSNNQIRAL-PDTFFRLE 360
L ++ L+ +L E+P + LI L ELDLS N + A+ P +F L
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 361 NLTKLNLDQ 369
+L KL + Q
Sbjct: 232 HLQKLWMIQ 240
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 53/225 (23%)
Query: 178 LNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
L+LS N L + S +L+ LD+S +Q++ D + L +L L ++GN + +L
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 92
Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD 295
++ S L +S LV + TN+ L FP I +++LK L+
Sbjct: 93 -ALGAFSGL----SSLQKLVAVETNLA--------------SLENFP--IGHLKTLKELN 131
Query: 296 AHFNELHG--LPRAIGKLTRLEVLNLSSN---------FNDLTELPETIGDL-------- 336
N + LP LT LE L+LSSN L ++P L
Sbjct: 132 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 191
Query: 337 ---------INLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
I L+EL L NQ++++PD F RL +L K+ L NP
Sbjct: 192 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL 367
IG L L+ LN++ N +LPE +L NL LDLS+N+I+++ T R+ + L
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 368 DQNPLVIPPMEIVNKGVEAVKEFMAK 393
L + PM + G A KE K
Sbjct: 181 LSLDLSLNPMNFIQPG--AFKEIRLK 204
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 170 GRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQSL 211
G L+ L LN++ NL+++ +P+ + L LE LD+SSN +QS+
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 22/190 (11%)
Query: 219 LNLKVLNVSGNKLNTL--PESIARCSSLVELDASFNNLVC--LPTNIGYGLLNLERLSIK 274
+N+K VSG ++ + P I S + LD S NNL+ + N G+ L LE L ++
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKI---SPFLHLDFS-NNLLTDTVFENCGH-LTELETLILQ 356
Query: 275 LNKLR---TFPPSICEMRSLKYLDAHFNEL-HGLPRAIGKLTR-LEVLNLSSNFNDLTEL 329
+N+L+ +M+SL+ LD N + + + T+ L LN+SSN L
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-----L 411
Query: 330 PETIGDLI--NLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAV 387
+TI + ++ LDL +N+I+++P +LE L +LN+ N L P I ++
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Query: 388 KEFMAKR-WD 396
K ++ WD
Sbjct: 472 KIWLHTNPWD 481
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 16/156 (10%)
Query: 152 VETVDLADRQLKLL---PEAFGRLRGLVSLNLSRNLL--EAMPDSIAGLQKLEELDVSSN 206
+ET+ L QLK L E +++ L L++S+N + + + + L L++SSN
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Query: 207 LLQSLPDSIGLLL--NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYG 264
+L D+I L +KVL++ NK+ ++P+ + + +L EL+ + N L +P I
Sbjct: 410 IL---TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466
Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNE 300
L +L+++ + N P C + YL N+
Sbjct: 467 LTSLQKIWLHTN------PWDCSCPRIDYLSRWLNK 496
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 48/186 (25%)
Query: 200 ELDVSSNLL-QSLPDSIGLLLNLKVLNVSGNKLNTL---PESIARCSSLVELDASFNNLV 255
LD S+NLL ++ ++ G L L+ L + N+L L E + SL +LD S N++
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 256 -------CLPTNIGYGLLNLERLSIKLNK--LRTFPPSICEMRSLKYLDAHFNELHGLPR 306
C T LL+L S L R PP I K LD H N++ +P+
Sbjct: 388 YDEKKGDCSWTK---SLLSLNMSSNILTDTIFRCLPPRI------KVLDLHSNKIKSIPK 438
Query: 307 AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFF-RLENLTKL 365
+ KL L+ EL++++NQ++++PD F RL +L K+
Sbjct: 439 QVVKLEALQ-------------------------ELNVASNQLKSVPDGIFDRLTSLQKI 473
Query: 366 NLDQNP 371
L NP
Sbjct: 474 WLHTNP 479
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 97/219 (44%), Gaps = 20/219 (9%)
Query: 143 LQEAESGVVVET--VDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAM-PDSIAGLQKL 198
LQ +G+ + + L ++ +P A F R L L L N L + + GL L
Sbjct: 22 LQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL 81
Query: 199 EELDVSSNLLQSL--PDSIGLLLNLKVLNVSGNKLNTLPESIAR-CSSLVELDASFNNLV 255
E+LD+S N + P + L +L L++ L L + R ++L L NNL
Sbjct: 82 EQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ 141
Query: 256 CLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDA------HFNELHGLPRAIG 309
LP N L NL L + N++ + P R L LD H +H P A
Sbjct: 142 ALPDNTFRDLGNLTHLFLHGNRIPSVPEH--AFRGLHSLDRLLLHQNHVARVH--PHAFR 197
Query: 310 KLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNN 347
L RL L L + N+L+ LP E + L +L+ L L++N
Sbjct: 198 DLGRLMTLYLFA--NNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 63/150 (42%), Gaps = 28/150 (18%)
Query: 269 ERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSN---- 322
+R+ + N++ P S R+L L H N L G+ A LT LE L+LS N
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 323 ------FNDLTEL--------------PETIGDLINLRELDLSNNQIRALPDTFFR-LEN 361
F L L P L L+ L L +N ++ALPD FR L N
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 362 LTKLNLDQNPLVIPPMEIVNKGVEAVKEFM 391
LT L L N + P E +G+ ++ +
Sbjct: 154 LTHLFLHGNRIPSVP-EHAFRGLHSLDRLL 182
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 53/225 (23%)
Query: 178 LNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
L+LS N L + S +L+ LD+S +Q++ D + L +L L ++GN + +L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 91
Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD 295
++ S L +S LV + TN+ L FP I +++LK L+
Sbjct: 92 -ALGAFSGL----SSLQKLVAVETNLA--------------SLENFP--IGHLKTLKELN 130
Query: 296 AHFNELHG--LPRAIGKLTRLEVLNLSSN---------FNDLTELPETIGDL-------- 336
N + LP LT LE L+LSSN L ++P L
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 337 ---------INLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
I L+EL L NQ++++PD F RL +L K+ L NP
Sbjct: 191 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL 367
IG L L+ LN++ N +LPE +L NL LDLS+N+I+++ T R+ + L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 368 DQNPLVIPPMEIVNKGVEAVKEFMAK 393
L + PM + G A KE K
Sbjct: 180 LSLDLSLNPMNFIQPG--AFKEIRLK 203
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 170 GRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQSL 211
G L+ L LN++ NL+++ +P+ + L LE LD+SSN +QS+
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 169 FGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDSIGLLLN-LKVLNV 226
FGRL LV L L RN L + P++ G ++EL + N ++ + + + L L+ LK LN+
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 227 SGNKLNT-LPESIARCSSLVELDASFNNLVC 256
N+++ +P S +SL L+ + N C
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 299 NELHGL-PRAIGKLTRLEVLNLSSNFNDLTELPETIG-DLINLRELDLSNNQIRA-LPDT 355
N+L G+ P A + ++ L L N + E+ + L L+ L+L +NQI +P +
Sbjct: 64 NQLTGIEPNAFEGASHIQELQLGEN--KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 356 FFRLENLTKLNLDQNPL 372
F L +LT LNL NP
Sbjct: 122 FEHLNSLTSLNLASNPF 138
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 39/197 (19%)
Query: 188 MPDSIAGLQKLEELDVS--SNLLQSLPDSIGLLLNLKVL-----NVSGNKLNTLPESIAR 240
+P S+A L L L + +NL+ +P +I L L L NVSG +P+ +++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQ 123
Query: 241 CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNE 300
+LV LD S+N L T PPSI + +L + N
Sbjct: 124 IKTLVTLDFSYNALS-----------------------GTLPPSISSLPNLVGITFDGNR 160
Query: 301 LHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLINLRELDLSNNQIRALPDTFFR 358
+ G +P + G ++L +++ + N LT ++P T +L NL +DLS N + F
Sbjct: 161 ISGAIPDSYGSFSKL-FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG 218
Query: 359 LE-NLTKLNLDQNPLVI 374
+ N K++L +N L
Sbjct: 219 SDKNTQKIHLAKNSLAF 235
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 31/187 (16%)
Query: 165 LPEAFGRLRGLVSLNLSRNLLEA-MPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNL- 221
+P+ +++ LV+L+ S N L +P SI+ L L + N + ++PDS G L
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176
Query: 222 KVLNVSGNKL-NTLPESIARCS--------SLVELDASF---------------NNLVCL 257
+ +S N+L +P + A + +++E DAS N+L
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 258 PTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLE 315
+G NL L ++ N++ T P + +++ L L+ FN L G +P+ G L R +
Sbjct: 237 LGKVGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294
Query: 316 VLNLSSN 322
V ++N
Sbjct: 295 VSAYANN 301
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 21/219 (9%)
Query: 165 LPEAFGRLR----GLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLPDSIGLLL 219
L +A LR + L+LS N L + + +A KLE L++SSN+L D + L
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLS 80
Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
L+ L+++ N + L S+ L A+ NN+ + + G G N+ + K+ LR
Sbjct: 81 TLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR 136
Query: 280 TFPPSICEMRSLKYLDAHFNELHGLPRA--IGKLTRLEVLNLSSNFNDLTELPETIGDLI 337
C R ++YLD NE+ + A LE LNL NF + + G ++
Sbjct: 137 DLDEG-CRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-----IYDVKGQVV 189
Query: 338 --NLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374
L+ LDLS+N++ + F +T ++L N LV+
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 13/174 (7%)
Query: 192 IAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF 251
+A L L L + +N + + D + L NL L +S N ++ + +++ +SL +L+ S
Sbjct: 103 LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSS 160
Query: 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKL 311
N + L L LERL I NK+ + ++ +L+ L A N++ + +G L
Sbjct: 161 NQVTDLKP--LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI-TPLGIL 216
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL 365
T L+ L+L N N L ++ T+ L NL +LDL+NNQI L L LTKL
Sbjct: 217 TNLDELSL--NGNQLKDI-GTLASLTNLTDLDLANNQISNLA----PLSGLTKL 263
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 39/252 (15%)
Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
+ V +D LK +P+ L+ L + ++ E D GLQ L L + +N + +
Sbjct: 35 LRVVQCSDLGLKAVPKEISPDTTLLDLQ-NNDISELRKDDFKGLQHLYALVLVNNKISKI 93
Query: 212 PD-SIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
+ + L L+ L +S N L +P ++ SSLVEL N + +P + GL N+
Sbjct: 94 HEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151
Query: 271 LSIKLNKLRT--FPPSICEMRSLKYLDAHFNELHGLPRAIG------------------- 309
+ + N L F P + L YL +L G+P+ +
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 211
Query: 310 ---KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR----ALPD------TF 356
+ ++L L L N + E ++ L LREL L NN++ LPD +
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY 270
Query: 357 FRLENLTKLNLD 368
N+TK+ ++
Sbjct: 271 LHTNNITKVGVN 282
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 32/217 (14%)
Query: 131 ELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD 190
++ ++ +D K LQ + V+V ++ K+ +AF LR L L +S+N L +P
Sbjct: 65 DISELRKDDFKGLQHLYALVLVN-----NKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119
Query: 191 SIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGN---------------KLNTL 234
++ L EL + N ++ +P + L N+ + + GN KLN L
Sbjct: 120 NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177
Query: 235 PESIARCS--------SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSI 285
S A+ + +L EL N + + L RL + N++R S+
Sbjct: 178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237
Query: 286 CEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN 322
+ +L+ L N+L +P + L L+V+ L +N
Sbjct: 238 SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 192 IAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF 251
+A L L L + +N + + D + L NL L +S N ++ + +++ +SL +L S
Sbjct: 103 LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSS 160
Query: 252 NNLVCL-PTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGK 310
N + L P L LERL I NK+ + ++ +L+ L A N++ + +G
Sbjct: 161 NQVTDLKPL---ANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI-TPLGI 215
Query: 311 LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL 365
LT L+ L+L N N L ++ T+ L NL +LDL+NNQI L L LTKL
Sbjct: 216 LTNLDELSL--NGNQLKDI-GTLASLTNLTDLDLANNQISNLA----PLSGLTKL 263
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 13/174 (7%)
Query: 192 IAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF 251
+A L L L + +N + + D + L NL L +S N ++ + +++ +SL +L S
Sbjct: 103 LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSS 160
Query: 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKL 311
N + L L LERL I NK+ + ++ +L+ L A N++ + +G L
Sbjct: 161 NQVTDLKP--LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI-TPLGIL 216
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL 365
T L+ L+L N N L ++ T+ L NL +LDL+NNQI L L LTKL
Sbjct: 217 TNLDELSL--NGNQLKDI-GTLASLTNLTDLDLANNQISNLA----PLSGLTKL 263
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 192 IAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF 251
+A L L L + +N + + D + L NL L +S N ++ + +++ +SL +L SF
Sbjct: 108 LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQL--SF 163
Query: 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKL 311
N V + L LERL I NK+ + ++ +L+ L A N++ + +G L
Sbjct: 164 GNQVTDLKPLA-NLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDI-TPLGIL 220
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL 365
T L+ L+L N N L ++ T+ L NL +LDL+NNQI L L LTKL
Sbjct: 221 TNLDELSL--NGNQLKDI-GTLASLTNLTDLDLANNQISNLA----PLSGLTKL 267
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 192 IAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF 251
+A L L L + +N + + D + L NL L +S N ++ + +++ +SL +L SF
Sbjct: 107 LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQL--SF 162
Query: 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKL 311
N V + L LERL I NK+ + ++ +L+ L A N++ + +G L
Sbjct: 163 GNQVTDLKPLA-NLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDI-TPLGIL 219
Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL 365
T L+ L+L N N L ++ T+ L NL +LDL+NNQI L L LTKL
Sbjct: 220 TNLDELSL--NGNQLKDI-GTLASLTNLTDLDLANNQISNLA----PLSGLTKL 266
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFN 324
L LERL I NK+ + ++ +L+ L A N++ + +G LT L+ L+L N N
Sbjct: 171 LTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI-TPLGILTNLDELSL--NGN 226
Query: 325 DLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL 365
L ++ T+ L NL +LDL+NNQI L L LTKL
Sbjct: 227 QLKDI-GTLASLTNLTDLDLANNQISNLA----PLSGLTKL 262
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFN 324
L LERL I NK+ + ++ +L+ L A N++ + +G LT L+ L+L N N
Sbjct: 171 LTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI-TPLGILTNLDELSL--NGN 226
Query: 325 DLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL 365
L ++ T+ L NL +LDL+NNQI L L LTKL
Sbjct: 227 QLKDI-GTLASLTNLTDLDLANNQISNLA----PLSGLTKL 262
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 25/152 (16%)
Query: 167 EAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL------- 219
E L+ L ++++S+N +MP++ +K++ L++SS + S+ I L
Sbjct: 381 ETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSN 440
Query: 220 -----------NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
LK L +S NKL TLP++ + L+ L S N L +P I L +L
Sbjct: 441 NNLNLFSLNLPQLKELYISRNKLMTLPDA-SLLPMLLVLKISRNQLKSVPDGIFDRLTSL 499
Query: 269 ERLSIKLNKLRTFPPSICEMRSLKYLDAHFNE 300
+++ + N P C + YL N+
Sbjct: 500 QKIWLHTN------PWDCSCPRIDYLSRWLNK 525
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 185 LEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSL 244
LE +++ L+ L +D+S N S+P++ +K LN+S +++++ I + +
Sbjct: 376 LEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEI 435
Query: 245 VELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELHG 303
+++ + L L+ L I NKL T P S+ M L L N+L
Sbjct: 436 LDVSNN------NLNLFSLNLPQLKELYISRNKLMTLPDASLLPM--LLVLKISRNQLKS 487
Query: 304 LPRAI-GKLTRLEVLNLSSN 322
+P I +LT L+ + L +N
Sbjct: 488 VPDGIFDRLTSLQKIWLHTN 507
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 283 PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRE 341
PS C S +D L +P I T +VL L N +T+L P L L
Sbjct: 12 PSQCSC-SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDN--QITKLEPGVFDRLTQLTR 66
Query: 342 LDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
LDL NNQ+ LP F +L LT+L+L+ N L
Sbjct: 67 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 342 LDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
L L +NQI L P F RL LT+L+LD N L + P + +K
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 84
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 201 LDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPT 259
+D S L S+P G+ +VL + N++ L P R + L LD N L LP
Sbjct: 22 VDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 79
Query: 260 NIGYGLLNLERLSIKLNKLRTFP 282
+ L L +LS+ N+L++ P
Sbjct: 80 GVFDKLTQLTQLSLNDNQLKSIP 102
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 98/220 (44%), Gaps = 13/220 (5%)
Query: 163 KLLPEAFGRLRGLVSLNLSRNLL-EAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLN 220
K+ EAF L L LNLS NLL E + GL K+ +D+ N + + D + L
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363
Query: 221 LKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNKLR 279
L+ L++ N L T I S+ ++ S N LV LP N+ L++L ++ +
Sbjct: 364 LQTLDLRDNALTT----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419
Query: 280 TFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLI-- 337
F + ++ L F+ G + + LE L L N L E D+
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSG-DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478
Query: 338 --NLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVI 374
+L+ L L++N + +L P F L L L+L+ N L +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 190 DSIAGLQK--LEELDVSSNLLQSLPDSIG-LLLNLKVLNVSGNKLNTLP-ESIARCSSLV 245
++ AGL + + LD+S + SL + L +LKVLN++ NK+N + E+ +L
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 246 ELDASFNNLVCLPTNIGYGL-----LNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNE 300
L+ S+N L L ++ YGL ++L++ I + + +TF + ++++L D
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNALTT 376
Query: 301 LHGLPR------AIGKLTRLEVLNLSSNFNDLTE 328
+H +P + KL L +NL++N L+E
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 283 PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRE 341
PS C S +D L +P I T +VL L N +T+L P L L
Sbjct: 4 PSQCSC-SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDN--QITKLEPGVFDRLTQLTR 58
Query: 342 LDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
LDL NNQ+ LP F +L LT+L+L+ N L
Sbjct: 59 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 342 LDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
L L +NQI L P F RL LT+L+LD N L + P + +K
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 201 LDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPT 259
+D S L S+P G+ +VL + N++ L P R + L LD N L LP
Sbjct: 14 VDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71
Query: 260 NIGYGLLNLERLSIKLNKLRTFP 282
+ L L +LS+ N+L++ P
Sbjct: 72 GVFDKLTQLTQLSLNDNQLKSIP 94
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 191 SIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVEL 247
S+AG+Q L+EL +S N + L + L L+ L+V+ N+L L + C S + L
Sbjct: 55 SLAGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL 113
Query: 248 DASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRA 307
D N T+ L NLE LSI+ NKL++ + + L+ LD H NE+
Sbjct: 114 D----NNELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEI----TN 164
Query: 308 IGKLTRLEVLN 318
G LTRL+ +N
Sbjct: 165 TGGLTRLKKVN 175
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 23/152 (15%)
Query: 166 PEAFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLPDS---------I 215
P F LR L L+LS N + + D + GL+KLE LD+ N L L +
Sbjct: 483 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 542
Query: 216 GLLLNLKVLNVSGNKLNTLPESIARCSSLVEL---DASFNNLVCLPTNIGYGLLNLERLS 272
L +L +LN+ N + +P + + L EL D NNL LP ++ ++L+ L+
Sbjct: 543 KGLSHLHILNLESNGFDEIPVEVFK--DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 600
Query: 273 IKLNKL-----RTFPPSICEMRSLKYLDAHFN 299
++ N + + F P+ R+L LD FN
Sbjct: 601 LQKNLITSVEKKVFGPA---FRNLTELDMRFN 629
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 311 LTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLE-NLTKLNLD 368
L+ L +LNL SN D E+P E DL L+ +DL N + LP + F + +L LNL
Sbjct: 545 LSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 602
Query: 369 QN 370
+N
Sbjct: 603 KN 604
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 31/189 (16%)
Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASFNNLVCL 257
E D S L +PD L N+ VLN++ N+L LP + R S L LD FN + L
Sbjct: 17 EVADCSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 74
Query: 258 PTNIGYGLLNLERLSIKLNKL-----RTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLT 312
+ L L+ L+++ N+L +TF + C + ELH + +I K+
Sbjct: 75 EPELCQKLPMLKVLNLQHNELSQLSDKTF--AFC---------TNLTELHLMSNSIQKIK 123
Query: 313 R--------LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT---FFRLEN 361
L L+LS N T+L + L+EL LSNN+I+AL F +
Sbjct: 124 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLSNNKIQALKSEELDIFANSS 182
Query: 362 LTKLNLDQN 370
L KL L N
Sbjct: 183 LKKLELSSN 191
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 171 RLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSG 228
+ L L+LS N L + DS A L +LE + N +Q L S+ L N++ LN+
Sbjct: 256 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 315
Query: 229 N------KLNTLPE----SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI--KLN 276
+ L +LP+ S L L+ N++ + +N+ GL+NL+ LS+
Sbjct: 316 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 375
Query: 277 KLRT 280
LRT
Sbjct: 376 SLRT 379
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 283 PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRE 341
PS C S +D L +P I T +VL L N +T+L P L L
Sbjct: 4 PSQCSC-SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDN--RITKLEPGVFDRLTQLTR 58
Query: 342 LDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
LDL NNQ+ LP F +L LT+L+L+ N L
Sbjct: 59 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 201 LDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPT 259
+D S L S+P G+ +VL + N++ L P R + L LD N L LP
Sbjct: 14 VDCSGKSLASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71
Query: 260 NIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYL 294
+ L L +LS+ N+L++ P + +RSL ++
Sbjct: 72 GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 342 LDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
L L +N+I L P F RL LT+L+LD N L + P + +K
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 23/152 (15%)
Query: 166 PEAFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLPDS---------I 215
P F LR L L+LS N + + D + GL+KLE LD+ N L L +
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 216 GLLLNLKVLNVSGNKLNTLPESIARCSSLVEL---DASFNNLVCLPTNIGYGLLNLERLS 272
L +L +LN+ N + +P + + L EL D NNL LP ++ ++L+ L+
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFK--DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590
Query: 273 IKLNKL-----RTFPPSICEMRSLKYLDAHFN 299
++ N + + F P+ R+L LD FN
Sbjct: 591 LQKNLITSVEKKVFGPA---FRNLTELDMRFN 619
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 311 LTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLE-NLTKLNLD 368
L+ L +LNL SN D E+P E DL L+ +DL N + LP + F + +L LNL
Sbjct: 535 LSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592
Query: 369 QN 370
+N
Sbjct: 593 KN 594
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 31/191 (16%)
Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASFNNLVCL 257
E D S L +PD + N+ VLN++ N+L LP + R S L LD FN + L
Sbjct: 7 EVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64
Query: 258 PTNIGYGLLNLERLSIKLNKL-----RTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLT 312
+ L L+ L+++ N+L +TF + C + ELH + +I K+
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTF--AFC---------TNLTELHLMSNSIQKIK 113
Query: 313 R--------LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT---FFRLEN 361
L L+LS N T+L + L+EL LSNN+I+AL F +
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLSNNKIQALKSEELDIFANSS 172
Query: 362 LTKLNLDQNPL 372
L KL L N +
Sbjct: 173 LKKLELSSNQI 183
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 171 RLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSG 228
+ L L+LS N L + DS A L +LE + N +Q L S+ L N++ LN+
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305
Query: 229 N------KLNTLPE----SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI--KLN 276
+ L +LP+ S L L+ N++ + +N+ GL+NL+ LS+
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 277 KLRT 280
LRT
Sbjct: 366 SLRT 369
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 287 EMRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDL 344
E +K D +++ L +++ T LE L L+ N ++ ++ + L +L+EL L
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN--EINKIDDNAFWGLTHLKELAL 330
Query: 345 SNNQIRALPDTFF-RLENLTKLNLDQNP 371
NQ++++PD F RL +L K+ L NP
Sbjct: 331 DTNQLKSVPDGIFDRLTSLQKIWLHTNP 358
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 36/195 (18%)
Query: 242 SSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL-------RTFPPSICEMRSLKYL 294
SSL+ L +N + L T GL NLE L++ L F P + SL+ L
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP----LTSLEML 134
Query: 295 DAHFNELHGLPRA--IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL 352
N + + A + R VL+L+ FN + + E DL+N +
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLT--FNKVKSICEE--DLLNFQGKHF-------- 182
Query: 353 PDTFFRLENLTKLNLDQ---------NPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQ 403
T RL ++T ++++ NP + ++ KE MAKR+ IA +
Sbjct: 183 --TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240
Query: 404 QKSILEANKQQQAQS 418
+S++ +N S
Sbjct: 241 IQSLILSNSYNMGSS 255
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 23/152 (15%)
Query: 166 PEAFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLPDS---------I 215
P F LR L L+LS N + + D + GL+KLE LD+ N L L +
Sbjct: 478 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 537
Query: 216 GLLLNLKVLNVSGNKLNTLPESIARCSSLVEL---DASFNNLVCLPTNIGYGLLNLERLS 272
L +L +LN+ N + +P + + L EL D NNL LP ++ ++L+ L+
Sbjct: 538 KGLSHLHILNLESNGFDEIPVEVFK--DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 595
Query: 273 IKLNKL-----RTFPPSICEMRSLKYLDAHFN 299
++ N + + F P+ R+L LD FN
Sbjct: 596 LQKNLITSVEKKVFGPA---FRNLTELDMRFN 624
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 311 LTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLE-NLTKLNLD 368
L+ L +LNL SN D E+P E DL L+ +DL N + LP + F + +L LNL
Sbjct: 540 LSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 597
Query: 369 QN 370
+N
Sbjct: 598 KN 599
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 31/189 (16%)
Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASFNNLVCL 257
E D S L +PD + N+ VLN++ N+L LP + R S L LD FN + L
Sbjct: 12 EVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 69
Query: 258 PTNIGYGLLNLERLSIKLNKL-----RTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLT 312
+ L L+ L+++ N+L +TF + C + ELH + +I K+
Sbjct: 70 EPELCQKLPMLKVLNLQHNELSQLSDKTF--AFC---------TNLTELHLMSNSIQKIK 118
Query: 313 R--------LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT---FFRLEN 361
L L+LS N T+L + L+EL LSNN+I+AL F +
Sbjct: 119 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLSNNKIQALKSEELDIFANSS 177
Query: 362 LTKLNLDQN 370
L KL L N
Sbjct: 178 LKKLELSSN 186
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 171 RLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSG 228
+ L L+LS N L + DS A L +LE + N +Q L S+ L N++ LN+
Sbjct: 251 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 310
Query: 229 N------KLNTLPE----SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI--KLN 276
+ L +LP+ S L L+ N++ + +N+ GL+NL+ LS+
Sbjct: 311 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 370
Query: 277 KLRT 280
LRT
Sbjct: 371 SLRT 374
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 163 KLLPEAFGRLRGLVSLNLSRNLLEAMPDSIA-GLQKLEELDVSSNLLQSLPDSIGLLLNL 221
KL P F L L LNL+ N L A+P + L KL L + N L+S+P +G+ NL
Sbjct: 54 KLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP--MGVFDNL 111
Query: 222 KVL 224
K L
Sbjct: 112 KSL 114
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 286 CEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDL 344
C+ RSL + A G+P T +VL+L N +T+L P L L L+L
Sbjct: 26 CQERSLASVPA------GIP------TTTQVLHLY--INQITKLEPGVFDSLTQLTYLNL 71
Query: 345 SNNQIRALP-DTFFRLENLTKLNLDQNPLVIPPMEIVN 381
+ NQ+ ALP F +L LT L L N L PM + +
Sbjct: 72 AVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFD 109
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 203 VSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIG 262
S+ L+ LP G+ ++ L + GN+ +P+ ++ L +D S N + L
Sbjct: 17 CSNKGLKVLPK--GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 263 YGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLS 320
+ L L + N+LR PP + ++SL+ L H N++ +P A L+ L L +
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134
Query: 321 SN 322
+N
Sbjct: 135 AN 136
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 304 LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD-TFFRLENL 362
LP+ I + +V L + N T +P+ + + +L +DLSNN+I L + +F + L
Sbjct: 25 LPKGIPR----DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 363 TKLNLDQNPL-VIPP 376
L L N L IPP
Sbjct: 81 LTLILSYNRLRCIPP 95
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 155 VDLAD-RQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL- 211
+DL + ++L+ + E AF L L LNL ++ MP+ + L LEEL++S N +
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIR 234
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
P S L +LK L V ++++ + + +SLVEL+ + NNL LP ++ L L
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294
Query: 271 LSIKLN 276
L + N
Sbjct: 295 LHLHHN 300
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 26/158 (16%)
Query: 241 CSSLVELDASFNNLVC-----------LPTNIGYGLLNLERLSIKLNKLRTFPPSICEMR 289
C S+ F+ +VC +P+N Y LNL +I++ + TF +
Sbjct: 46 CPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRY--LNLMENNIQMIQADTFR----HLH 99
Query: 290 SLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF-NDLTELPETIGDLIN-LRELDLSNN 347
L+ L N + + +G L LN F N LT +P + ++ LREL L NN
Sbjct: 100 HLEVLQLGRNSIRQI--EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157
Query: 348 QIRALPDTFF-RLENLTKLNLDQNPLVIPPMEIVNKGV 384
I ++P F R+ +L +L+L + + +E +++G
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGE----LKKLEYISEGA 191
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 53/174 (30%)
Query: 202 DVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTN 260
D S L +PD + N+ VLN++ N+L L P + R S L LDA FN++ L
Sbjct: 10 DCSHLKLTHIPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKL--- 64
Query: 261 IGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLS 320
P +C++ L L+VLNL
Sbjct: 65 ---------------------EPELCQILPL----------------------LKVLNLQ 81
Query: 321 SNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPL 372
N+L+++ +T NL ELDL +N I + F+ +NL KL+L N L
Sbjct: 82 H--NELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 19/237 (8%)
Query: 152 VETVDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQ 209
+ ++L QL+ LP F R L L+ N + + P+ L L+ L++ N L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 210 SLPD-SIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLN 267
+ D + NL L++ N ++ + + +L++LD S N L T +G G+
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS--STKLGTGVQL 144
Query: 268 LERLSI-----KLNKLRTFPPSICEMRSLKYLDAHFNELH----GLPRAIGKLTRLEVLN 318
+ K+ LR+ SL+ LD N L G + IGKL L + N
Sbjct: 145 ENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNN 204
Query: 319 LSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFF---RLENLTKLNLDQNPL 372
N + +L + + +++ L L+NNQ+ A ++ F + NLT+L+L N L
Sbjct: 205 AQLNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 85/206 (41%), Gaps = 37/206 (17%)
Query: 220 NLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278
NL L++S N L+ + S + SL L +NN+ L YGL NL LS+K
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK---- 304
Query: 279 RTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLIN 338
R F + S +D + L LE LN+ N N + T L++
Sbjct: 305 RAFTKQSVSLASHPNIDDF---------SFQWLKYLEYLNMDDN-NIPSTKSNTFTGLVS 354
Query: 339 LRELDLSNNQIRALPDTFFRLENLTK---LNLDQNPLVIPPMEIVNKGVEAVKEFMAKRW 395
L+ L LS TF L+ LT ++L +PL+ + K ++K
Sbjct: 355 LKYLSLS--------KTFTSLQTLTNETFVSLAHSPLLT---------LNLTKNHISKIA 397
Query: 396 DGIIAEAQQKSILE--ANKQQQAQSG 419
+G + Q IL+ N+ +Q SG
Sbjct: 398 NGTFSWLGQLRILDLGLNEIEQKLSG 423
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 165 LPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLK 222
LPE +R L +N ++ +P + + +KL +D+S+N + L PD+ L +L
Sbjct: 30 LPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 223 VLNVSGNKLNTLPESI 238
L + GNK+ LP+S+
Sbjct: 84 SLVLYGNKITELPKSL 99
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 151 VVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLL-EAMPDSIAGLQKLEELDVSSNLL 208
+ + L +K++P AF + L ++LS N + E PD+ GL+ L L + N +
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 209 QSLPDSI 215
LP S+
Sbjct: 93 TELPKSL 99
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 330 PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLV 373
P LR +DLSNNQI L PD F L +L L L N +
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 132 LVDVNEDVVKILQEAESGVV-VETVDLADRQLKLLPE----------------------A 168
L+ +N + KI A + +V +E + L+ QLK LPE
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 169 FGRLRGLVSLNLSRNLLEAMP---DSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN 225
F L ++ + L N L++ + G++KL + ++ + ++P GL +L L+
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELH 198
Query: 226 VSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS 284
+ GNK+ + S+ ++L +L SFN++ + +L L + NKL P
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258
Query: 285 ICEMRSLKYLDAHFNELHGL 304
+ + + ++ + H N + +
Sbjct: 259 LADHKYIQVVYLHNNNISAI 278
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 169 FGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS 227
F L+ L +L L N + + P + A L KLE L +S N L+ LP+ + L+ L V
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVH 129
Query: 228 GNKLNTLPESIARCSS---LVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT---- 280
N++ + +S+ + +VEL + + G+ L + I + T
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189
Query: 281 FPPSICEMRSLKYLDAHFNELHGLPRA-IGKLTRLEVLNLSSNFNDLTELPE-TIGDLIN 338
PPS+ E+ +LD N++ + A + L L L LS FN ++ + ++ + +
Sbjct: 190 LPPSLTEL----HLDG--NKITKVDAASLKGLNNLAKLGLS--FNSISAVDNGSLANTPH 241
Query: 339 LRELDLSNNQIRALP 353
LREL L+NN++ +P
Sbjct: 242 LRELHLNNNKLVKVP 256
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 132 LVDVNEDVVKILQEAESGVV-VETVDLADRQLKLLPE----------------------A 168
L+ +N + KI A + +V +E + L+ QLK LPE
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 169 FGRLRGLVSLNLSRNLLEAMP---DSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN 225
F L ++ + L N L++ + G++KL + ++ + ++P GL +L L+
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELH 198
Query: 226 VSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS 284
+ GNK+ + S+ ++L +L SFN++ + +L L + NKL P
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258
Query: 285 ICEMRSLKYLDAHFNELHGL 304
+ + + ++ + H N + +
Sbjct: 259 LADHKYIQVVYLHNNNISAI 278
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 169 FGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS 227
F L+ L +L L N + + P + A L KLE L +S N L+ LP+ + L+ L V
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVH 129
Query: 228 GNKLNTLPESIARCSS---LVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT---- 280
N++ + +S+ + +VEL + + G+ L + I + T
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189
Query: 281 FPPSICEMRSLKYLDAHFNELHGLPRA-IGKLTRLEVLNLSSNFNDLTELPE-TIGDLIN 338
PPS+ E+ +LD N++ + A + L L L LS FN ++ + ++ + +
Sbjct: 190 LPPSLTEL----HLDG--NKITKVDAASLKGLNNLAKLGLS--FNSISAVDNGSLANTPH 241
Query: 339 LRELDLSNNQIRALP 353
LREL L+NN++ +P
Sbjct: 242 LRELHLNNNKLVKVP 256
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 178 LNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES 237
L+L RNL++ + + A LEEL +S N + SL I L+NL+VL +S NK+ E
Sbjct: 76 LSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGE- 133
Query: 238 IARCSSLVELD 248
I + ++L +L+
Sbjct: 134 IDKLAALDKLE 144
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 178 LNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES 237
L+L RNL++ + + A LEEL +S N + SL I L+NL+VL +S NK+ E
Sbjct: 75 LSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGE- 132
Query: 238 IARCSSLVELD 248
I + ++L +L+
Sbjct: 133 IDKLAALDKLE 143
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 163 KLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAG-LQKLEELDVSSNLLQSLPDSIGLLLNL 221
KL P F L L L + N L A+P + L +L +LD++ N L+S+P G NL
Sbjct: 47 KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR--GAFDNL 104
Query: 222 KVL 224
K L
Sbjct: 105 KSL 107
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 322 NFNDLTEL-PETIGDLINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
N N +T+L P L+NL++L ++N++ A+P F +L LT+L+L+ N L
Sbjct: 41 NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
P L+NL+ L + NKL +P + + + L +LD + N+L +P L +L
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109
Query: 271 LSIKLNKLRTFPPSICEMRSLKYL 294
+ + N P CE R + YL
Sbjct: 110 IYLYNN------PWDCECRDIMYL 127
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 39/166 (23%)
Query: 223 VLNVSGNKLNTLPESIARCSSLVELDASFNNLVCL-----PTNIGYGLLNLERLSIKLNK 277
+L+ S +L +P+S+ ++L LD S NNL L PT L NL L + N
Sbjct: 22 ILSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTR----LTNLHSLLLSHNH 75
Query: 278 LRTFPP-SICEMRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSN---------FNDL 326
L + + +L+YLD N LH L + L LEVL L +N F D+
Sbjct: 76 LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 327 TELP--------------ETIGD---LINLRELDLSNNQIRALPDT 355
+L E I D L L LDLS+N+++ LP T
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 31/193 (16%)
Query: 158 ADRQLKLLPEAFGRLRGLVSL---NLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDS 214
+ +QL +P++ L+ L NLSR E P + L L N + S ++
Sbjct: 26 SKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--EA 83
Query: 215 IGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNN-LVCLPTNIGYGLLNLERLSI 273
+ NL+ L++S N L+TL E + +E+ +NN +V + N + L++L +
Sbjct: 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143
Query: 274 KLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN------FNDLT 327
N++ FP L + KL +L +L+LSSN DL
Sbjct: 144 SQNQISRFPVE-------------------LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184
Query: 328 ELPETIGDLINLR 340
+LP + + + L
Sbjct: 185 KLPAWVKNGLYLH 197
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 284 SICEMRSLKYLDAHFNELHGL----PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINL 339
S + LK ++ H E + P GK T L LNL +F++ E I D INL
Sbjct: 33 SFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE----GEIIIDGINL 88
Query: 340 RELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGII 399
+ D + N++R F+ NL N + + PM++ ++W
Sbjct: 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV-------------RKWPREK 135
Query: 400 AEAQQKSILE 409
AEA+ +L+
Sbjct: 136 AEAKAMELLD 145
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 284 SICEMRSLKYLDAHFNELHGL----PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINL 339
S + LK ++ H E + P GK T L LNL +F++ E I D INL
Sbjct: 12 SFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE----GEIIIDGINL 67
Query: 340 RELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGII 399
+ D + N++R F+ NL N + + PM++ ++W
Sbjct: 68 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV-------------RKWPREK 114
Query: 400 AEAQQKSILE 409
AEA+ +L+
Sbjct: 115 AEAKAMELLD 124
>pdb|2OGU|A Chain A, Crystal Structure Of The Isolated Mthk Rck Domain
Length = 233
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
K L + N +HG P + L + V + DL ETI ++ +R++D S +R
Sbjct: 48 KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES---VRI 104
Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
+ + R EN+ +L + VI P I +
Sbjct: 105 IAEA-ERYENIEQLRMAGADQVISPFVISGR 134
>pdb|4EI2|A Chain A, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|B Chain B, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|C Chain C, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|D Chain D, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|E Chain E, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|F Chain F, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|G Chain G, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|H Chain H, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|I Chain I, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|J Chain J, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|K Chain K, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|L Chain L, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|M Chain M, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|N Chain N, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|O Chain O, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|P Chain P, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
Length = 242
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
K L + N +HG P + L + V + DL ETI ++ +R++D S +R
Sbjct: 45 KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES---VRI 101
Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
+ + R EN+ +L + VI P I +
Sbjct: 102 IAEA-ERYENIEQLRMAGADQVISPFVISGR 131
>pdb|2AEF|A Chain A, Crystal Structures Of The Mthk Rck Domain In Ca2+ Bound
Form
pdb|2AEF|B Chain B, Crystal Structures Of The Mthk Rck Domain In Ca2+ Bound
Form
pdb|2AEJ|A Chain A, Crystal Structures Of The Mthk Rck Domain In No Ca2+ Bound
Form
pdb|2AEJ|B Chain B, Crystal Structures Of The Mthk Rck Domain In No Ca2+ Bound
Form
pdb|2AEM|A Chain A, Crystal Structures Of The Mthk Rck Domain
Length = 234
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
K L + N +HG P + L + V + DL ETI ++ +R++D S +R
Sbjct: 45 KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES---VRI 101
Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
+ + R EN+ +L + VI P I +
Sbjct: 102 IAEA-ERYENIEQLRMAGADQVISPFVISGR 131
>pdb|3KXD|A Chain A, Crystal Structure Of The Mthk Rck In Complex With Cadmium
pdb|3KXD|B Chain B, Crystal Structure Of The Mthk Rck In Complex With Cadmium
Length = 224
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
K L + N +HG P + L + V + DL ETI ++ +R++D S +R
Sbjct: 36 KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES---VRI 92
Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
+ + R EN+ +L + VI P I +
Sbjct: 93 IAEA-ERYENIEQLRMAGADQVISPFVISGR 122
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 32/183 (17%)
Query: 192 IAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARC-SSLVELDAS 250
+ + +++ D+SS +L+ L + ++++ LN+ ++ + + + +C + L ELD +
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCE-----MSVESLNLQEHRFSDISSTTFQCFTQLQELDLT 283
Query: 251 FNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGK 310
+L LP+ + GL L++L + +N HF++L + A
Sbjct: 284 ATHLKGLPSGMK-GLNLLKKLVLSVN--------------------HFDQLCQISAA--N 320
Query: 311 LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTK---LNL 367
L L + N L + L NL+ LDLS+N I A +L+NL+ LNL
Sbjct: 321 FPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Query: 368 DQN 370
N
Sbjct: 381 SHN 383
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 301 LHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRL- 359
L GL K+ +L + N S LP T+ L LREL LS+N L D RL
Sbjct: 73 LQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDN---PLGDAGLRLL 129
Query: 360 --------ENLTKLNLDQNPLV---IPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQK 405
+L KL L+ L P+ V + A+KE D I EA +
Sbjct: 130 CEGLLDPQCHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNND--IGEAGAR 184
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN 322
LL + L + N+LR PP++ +R L+ L A N L + + L RL+ L L +N
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 278 LRTFPPSICEMRSLKYLD----------AHFNELHG---LPRAIGKLTRLEVLNLSSNFN 324
+R P + E +L+Y A+ ++L L ++ K+ +V L
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451
Query: 325 DLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
DLT L + L+ + LDLS+N++RALP L L L N L
Sbjct: 452 DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN 322
LL + L + N+LR PP++ +R L+ L A N L + + L RL+ L L +N
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 278 LRTFPPSICEMRSLKYLD----------AHFNELHG---LPRAIGKLTRLEVLNLSSNFN 324
+R P + E +L+Y A+ ++L L ++ K+ +V L
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451
Query: 325 DLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
DLT L + L+ + LDLS+N++RALP L L L N L
Sbjct: 452 DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
K L + N +HG P + L + V + DL ETI ++ +R++D S +R
Sbjct: 151 KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES---VRI 207
Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
+ + R EN+ +L + VI P I +
Sbjct: 208 IAEA-ERYENIEQLRMAGADQVISPFVISGR 237
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
K L + N +HG P + L + V + DL ETI ++ +R++D S +R
Sbjct: 151 KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES---VRI 207
Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
+ + R EN+ +L + VI P I +
Sbjct: 208 IAEA-ERYENIEQLRMAGADQVISPFVISGR 237
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 155 VDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD--SIAGLQKLEELDVSSNL-LQSL 211
++ A+ L + PEAF L L L +S ++ +PD I LQK+ LD+ N+ + ++
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINIHTI 144
Query: 212 PDS--IGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDAS-FNNLVCLPTNIGYGLLNL 268
+ +GL +L ++ N + + S + L EL+ S NNL LP ++ +G
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204
Query: 269 ERLSIKLNKLRTFP 282
L I ++ + P
Sbjct: 205 VILDISRTRIHSLP 218
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 151 VVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLL-EAMPDSIAGLQKLEELDVSSNLL 208
+ + L +K++P AF + L ++LS N + E PD+ GL+ L L + N +
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 209 QSLPDSI 215
LP S+
Sbjct: 93 TELPKSL 99
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 330 PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLV 373
P LR +DLSNNQI L PD F L +L L L N +
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 290 SLKYLDAHFNELHGLPRA-IGKLTRLEVLNLSSNFNDLTELPETIG--DLINLRELDLSN 346
++K LD N L + A + T+LE+LNLSSN L ET+ L LR LDL+N
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-----LYETLDLESLSTLRTLDLNN 89
Query: 347 NQIRAL 352
N ++ L
Sbjct: 90 NYVQEL 95
>pdb|2FY8|A Chain A, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|B Chain B, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|C Chain C, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|D Chain D, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|E Chain E, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|F Chain F, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|G Chain G, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|H Chain H, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
Length = 230
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
K L + N +HG P + L + V + +L ETI ++ +R++D S +R
Sbjct: 45 KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDES---VRI 101
Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
+ + R EN+ +L + VI P I +
Sbjct: 102 IAEA-ERYENIEQLRMAGADQVISPFVISGR 131
>pdb|3RBX|A Chain A, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|B Chain B, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|C Chain C, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|D Chain D, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|E Chain E, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|F Chain F, Mthk Rck Domain D184n Mutant, Ca2+-Bound
Length = 234
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
K L + N +HG P + L + V + +L ETI ++ +R++D S +R
Sbjct: 45 KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDES---VRI 101
Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
+ + R EN+ +L + VI P I +
Sbjct: 102 IAEA-ERYENIEQLRMAGADQVISPFVISGR 131
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 370 NPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKS 406
NPL PP EIV +G EAV+++ I EA+ K
Sbjct: 2 NPLESPPPEIVKQGKEAVRQYFQS-----IEEARSKG 33
>pdb|3EEQ|A Chain A, Crystal Structure Of A Putative Cobalamin Biosynthesis
Protein G Homolog From Sulfolobus Solfataricus
pdb|3EEQ|B Chain B, Crystal Structure Of A Putative Cobalamin Biosynthesis
Protein G Homolog From Sulfolobus Solfataricus
Length = 336
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 13/69 (18%)
Query: 331 ETIGDLINLRELDLSNNQIRALPDTF---FRLENLTKLNLDQNPLVIPP----MEIVNKG 383
E IG + ++RE +++ + D F FRL N ++N NP + PP +E+ KG
Sbjct: 241 ERIGIIASIRE------EVKKIADEFNVRFRLVNEEEINNFMNPCLTPPSKTLIEVGLKG 294
Query: 384 VEAVKEFMA 392
V + +A
Sbjct: 295 VAEISALIA 303
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 20/59 (33%)
Query: 175 LVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
L+SLNLS N +L LD S+++Q P NLK+LN+SGN+L +
Sbjct: 172 LLSLNLSNN-------------RLYRLDDMSSIVQKAP-------NLKILNLSGNELKS 210
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 20/59 (33%)
Query: 175 LVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
L+SLNLS N +L LD S+++Q P NLK+LN+SGN+L +
Sbjct: 172 LLSLNLSNN-------------RLYRLDDMSSIVQKAP-------NLKILNLSGNELKS 210
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 20/59 (33%)
Query: 175 LVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
L+SLNLS N +L LD S+++Q P NLK+LN+SGN+L +
Sbjct: 172 LLSLNLSNN-------------RLYRLDDMSSIVQKAP-------NLKILNLSGNELKS 210
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 20/59 (33%)
Query: 175 LVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
L+SLNLS N +L LD S+++Q P NLK+LN+SGN+L +
Sbjct: 166 LLSLNLSNN-------------RLYRLDDMSSIVQKAP-------NLKILNLSGNELKS 204
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 20/59 (33%)
Query: 175 LVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
L+SLNLS N +L LD S+++Q P NLK+LN+SGN+L +
Sbjct: 166 LLSLNLSNN-------------RLYRLDDMSSIVQKAP-------NLKILNLSGNELKS 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,808,756
Number of Sequences: 62578
Number of extensions: 494670
Number of successful extensions: 2244
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1633
Number of HSP's gapped (non-prelim): 325
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)