Query 012694
Match_columns 458
No_of_seqs 478 out of 4056
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:20:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0444 Cytoskeletal regulator 99.9 9.8E-28 2.1E-32 235.6 -1.1 229 148-377 101-356 (1255)
2 KOG0472 Leucine-rich repeat pr 99.9 3.6E-27 7.8E-32 221.1 -1.0 111 284-394 430-562 (565)
3 KOG4194 Membrane glycoprotein 99.9 3.6E-27 7.8E-32 230.2 -3.2 338 34-394 97-448 (873)
4 KOG0472 Leucine-rich repeat pr 99.9 1.7E-27 3.6E-32 223.4 -8.2 241 149-394 90-331 (565)
5 KOG0444 Cytoskeletal regulator 99.9 4E-26 8.6E-31 224.3 -0.3 261 144-406 72-338 (1255)
6 KOG4194 Membrane glycoprotein 99.9 9.7E-26 2.1E-30 220.2 -1.5 308 65-390 98-421 (873)
7 PLN00113 leucine-rich repeat r 99.9 1.7E-22 3.8E-27 225.5 17.8 225 149-374 139-370 (968)
8 PLN00113 leucine-rich repeat r 99.9 2.7E-22 5.9E-27 223.9 18.6 225 148-375 116-347 (968)
9 PRK15370 E3 ubiquitin-protein 99.8 3E-20 6.5E-25 196.7 12.2 208 150-373 199-428 (754)
10 PRK15370 E3 ubiquitin-protein 99.8 1.4E-19 3E-24 191.7 15.4 209 150-379 178-386 (754)
11 KOG0617 Ras suppressor protein 99.8 5.1E-22 1.1E-26 166.6 -2.9 204 169-396 29-235 (264)
12 PRK15387 E3 ubiquitin-protein 99.8 1.9E-19 4.1E-24 189.7 14.0 208 151-379 223-464 (788)
13 KOG0617 Ras suppressor protein 99.8 1.5E-21 3.3E-26 163.8 -5.4 171 140-311 23-195 (264)
14 KOG0618 Serine/threonine phosp 99.8 1.4E-20 3.1E-25 193.2 -0.4 222 148-373 239-489 (1081)
15 KOG0618 Serine/threonine phosp 99.8 4.5E-20 9.7E-25 189.6 1.2 85 151-235 46-130 (1081)
16 PRK15387 E3 ubiquitin-protein 99.8 9.4E-18 2E-22 177.0 15.5 201 150-376 201-418 (788)
17 KOG4237 Extracellular matrix p 99.8 8.2E-20 1.8E-24 171.7 -0.7 238 150-395 67-375 (498)
18 PLN03210 Resistant to P. syrin 99.7 3.9E-17 8.5E-22 183.8 17.7 220 150-376 611-886 (1153)
19 PLN03210 Resistant to P. syrin 99.7 7.5E-17 1.6E-21 181.5 17.9 149 150-305 589-741 (1153)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-17 5E-22 160.9 9.6 233 150-382 23-300 (319)
21 KOG4237 Extracellular matrix p 99.7 2.1E-18 4.6E-23 162.2 -1.3 226 154-383 50-345 (498)
22 KOG0532 Leucine-rich repeat (L 99.7 9.5E-19 2.1E-23 171.4 -4.8 188 200-392 79-266 (722)
23 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-16 2.9E-21 155.5 9.6 230 142-372 43-319 (319)
24 COG4886 Leucine-rich repeat (L 99.5 1.2E-14 2.6E-19 146.1 8.5 201 177-381 97-298 (394)
25 KOG0532 Leucine-rich repeat (L 99.5 6.9E-16 1.5E-20 151.5 -2.4 195 149-348 74-271 (722)
26 COG4886 Leucine-rich repeat (L 99.5 1.5E-14 3.3E-19 145.4 6.5 196 154-353 97-293 (394)
27 KOG1909 Ran GTPase-activating 99.5 1.2E-14 2.5E-19 135.5 3.9 233 141-373 21-311 (382)
28 KOG1259 Nischarin, modulator o 99.5 1.7E-14 3.6E-19 131.7 2.1 204 169-377 178-416 (490)
29 KOG3207 Beta-tubulin folding c 99.4 1.1E-14 2.5E-19 139.1 0.1 201 148-350 119-339 (505)
30 PF14580 LRR_9: Leucine-rich r 99.4 4.9E-13 1.1E-17 117.0 4.7 122 197-320 20-148 (175)
31 KOG3207 Beta-tubulin folding c 99.4 2.4E-13 5.2E-18 130.1 2.7 213 163-375 111-341 (505)
32 PF14580 LRR_9: Leucine-rich r 99.3 1E-12 2.2E-17 115.0 5.2 103 151-255 20-126 (175)
33 KOG1259 Nischarin, modulator o 99.3 2.2E-13 4.9E-18 124.4 0.4 226 138-371 173-438 (490)
34 KOG0531 Protein phosphatase 1, 99.3 1.4E-13 3E-18 139.0 -2.2 226 143-376 88-321 (414)
35 KOG1909 Ran GTPase-activating 99.3 1.6E-12 3.4E-17 121.4 1.7 218 167-384 24-294 (382)
36 KOG0531 Protein phosphatase 1, 99.2 3.9E-12 8.5E-17 128.5 1.2 217 150-373 72-290 (414)
37 KOG4658 Apoptotic ATPase [Sign 99.0 2.2E-10 4.8E-15 124.0 5.3 129 148-277 521-653 (889)
38 KOG4658 Apoptotic ATPase [Sign 98.9 9.4E-10 2E-14 119.2 5.1 227 148-377 543-787 (889)
39 KOG1859 Leucine-rich repeat pr 98.9 1.9E-11 4.1E-16 123.7 -8.4 130 243-377 165-296 (1096)
40 KOG1859 Leucine-rich repeat pr 98.9 7.1E-11 1.5E-15 119.6 -4.9 123 197-322 165-289 (1096)
41 KOG2982 Uncharacterized conser 98.8 2.6E-09 5.7E-14 98.0 2.5 223 150-374 45-291 (418)
42 COG5238 RNA1 Ran GTPase-activa 98.8 3.2E-09 7E-14 96.3 3.0 239 137-375 17-318 (388)
43 KOG2120 SCF ubiquitin ligase, 98.7 1.3E-09 2.9E-14 100.0 -0.5 172 198-370 187-373 (419)
44 PF13855 LRR_8: Leucine rich r 98.7 1.7E-08 3.6E-13 72.7 3.2 57 174-230 2-60 (61)
45 PLN03150 hypothetical protein; 98.6 7.6E-08 1.6E-12 102.0 9.2 103 175-277 420-526 (623)
46 PF13855 LRR_8: Leucine rich r 98.6 2.3E-08 5E-13 71.9 3.3 36 241-276 24-59 (61)
47 PLN03150 hypothetical protein; 98.6 1E-07 2.2E-12 101.0 9.2 106 268-374 420-529 (623)
48 KOG4579 Leucine-rich repeat (L 98.6 5.5E-09 1.2E-13 85.4 -1.6 113 150-262 27-143 (177)
49 KOG4579 Leucine-rich repeat (L 98.6 6.4E-08 1.4E-12 79.2 4.2 99 140-238 43-142 (177)
50 KOG2120 SCF ubiquitin ligase, 98.5 3.4E-09 7.4E-14 97.3 -3.8 215 150-364 159-391 (419)
51 KOG2982 Uncharacterized conser 98.5 4.6E-08 1E-12 90.0 2.4 205 171-375 43-264 (418)
52 COG5238 RNA1 Ran GTPase-activa 98.4 1.5E-07 3.3E-12 85.5 3.4 208 167-374 24-286 (388)
53 KOG1644 U2-associated snRNP A' 98.4 4.3E-07 9.4E-12 79.3 5.7 101 220-321 43-149 (233)
54 PRK15386 type III secretion pr 98.4 8E-07 1.7E-11 87.3 7.7 135 169-322 48-187 (426)
55 PRK15386 type III secretion pr 98.4 2.9E-06 6.3E-11 83.5 10.7 135 146-302 48-190 (426)
56 PF12799 LRR_4: Leucine Rich r 98.2 1.9E-06 4E-11 57.2 3.9 37 174-210 2-38 (44)
57 KOG1644 U2-associated snRNP A' 98.2 2.2E-06 4.8E-11 74.9 5.4 103 174-301 43-152 (233)
58 PF12799 LRR_4: Leucine Rich r 98.2 1.9E-06 4.2E-11 57.1 3.6 38 197-234 2-39 (44)
59 KOG3665 ZYG-1-like serine/thre 98.0 3.1E-06 6.8E-11 89.9 3.2 150 218-368 121-283 (699)
60 KOG3665 ZYG-1-like serine/thre 97.9 8.1E-06 1.8E-10 86.8 4.5 131 148-279 120-263 (699)
61 KOG2123 Uncharacterized conser 97.9 1.3E-06 2.8E-11 80.0 -2.3 110 137-248 6-123 (388)
62 KOG2739 Leucine-rich acidic nu 97.5 3.4E-05 7.3E-10 70.4 1.6 104 169-273 39-150 (260)
63 KOG2739 Leucine-rich acidic nu 97.5 5.1E-05 1.1E-09 69.2 2.7 104 264-369 41-152 (260)
64 KOG2123 Uncharacterized conser 97.4 1.1E-05 2.4E-10 73.9 -3.6 79 241-322 18-98 (388)
65 PF13306 LRR_5: Leucine rich r 97.4 0.00058 1.3E-08 56.7 6.9 102 168-274 7-111 (129)
66 PF13306 LRR_5: Leucine rich r 97.3 0.00076 1.6E-08 56.0 7.4 116 148-269 10-129 (129)
67 KOG4308 LRR-containing protein 97.3 2.4E-06 5.2E-11 87.0 -10.1 110 265-374 203-332 (478)
68 KOG4341 F-box protein containi 97.2 3.4E-05 7.3E-10 74.6 -2.6 82 148-229 162-252 (483)
69 KOG4308 LRR-containing protein 96.9 2.9E-05 6.2E-10 79.2 -6.9 93 287-379 202-309 (478)
70 KOG4341 F-box protein containi 96.7 0.00031 6.6E-09 68.2 -1.2 223 148-371 188-437 (483)
71 KOG1947 Leucine rich repeat pr 96.4 0.00086 1.9E-08 69.0 0.0 105 149-253 187-306 (482)
72 KOG1947 Leucine rich repeat pr 96.1 0.001 2.2E-08 68.4 -1.5 34 172-205 187-223 (482)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0041 8.8E-08 34.3 0.1 20 338-357 1-20 (22)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.0079 1.7E-07 33.2 0.7 10 177-186 4-13 (22)
75 KOG0473 Leucine-rich repeat pr 95.0 0.00087 1.9E-08 60.2 -5.5 85 148-232 40-124 (326)
76 KOG0473 Leucine-rich repeat pr 94.7 0.00078 1.7E-08 60.5 -6.5 88 168-255 37-124 (326)
77 PF13504 LRR_7: Leucine rich r 94.4 0.023 5E-07 29.1 1.2 15 338-352 2-16 (17)
78 PF13504 LRR_7: Leucine rich r 93.7 0.042 9E-07 28.1 1.3 11 221-231 3-13 (17)
79 smart00369 LRR_TYP Leucine-ric 90.7 0.24 5.2E-06 28.3 2.2 21 242-262 2-22 (26)
80 smart00370 LRR Leucine-rich re 90.7 0.24 5.2E-06 28.3 2.2 21 242-262 2-22 (26)
81 smart00370 LRR Leucine-rich re 89.5 0.38 8.3E-06 27.4 2.4 16 338-353 3-18 (26)
82 smart00369 LRR_TYP Leucine-ric 89.5 0.38 8.3E-06 27.4 2.4 16 338-353 3-18 (26)
83 KOG3864 Uncharacterized conser 89.3 0.11 2.3E-06 46.2 -0.1 80 290-370 102-186 (221)
84 smart00364 LRR_BAC Leucine-ric 82.4 0.83 1.8E-05 26.2 1.2 18 337-354 2-19 (26)
85 KOG3864 Uncharacterized conser 82.0 0.29 6.3E-06 43.5 -1.1 63 284-347 120-186 (221)
86 PF13516 LRR_6: Leucine Rich r 80.5 0.42 9.2E-06 26.6 -0.4 15 360-374 2-16 (24)
87 smart00365 LRR_SD22 Leucine-ri 79.3 1.4 3.1E-05 25.3 1.6 16 337-352 2-17 (26)
88 smart00368 LRR_RI Leucine rich 78.3 1.6 3.4E-05 25.5 1.6 20 360-379 2-21 (28)
89 KOG3763 mRNA export factor TAP 58.5 4.8 0.0001 41.3 1.2 36 264-299 216-254 (585)
90 smart00367 LRR_CC Leucine-rich 57.3 7.5 0.00016 22.0 1.4 12 360-371 2-13 (26)
91 TIGR00864 PCC polycystin catio 46.6 14 0.0003 45.5 2.6 33 343-375 1-34 (2740)
92 KOG3763 mRNA export factor TAP 42.0 15 0.00032 37.9 1.7 36 194-229 216-254 (585)
93 KOG4242 Predicted myosin-I-bin 35.7 65 0.0014 32.8 4.9 39 338-376 414-456 (553)
94 KOG4242 Predicted myosin-I-bin 27.8 3.4E+02 0.0074 27.9 8.4 220 150-374 214-482 (553)
95 TIGR00864 PCC polycystin catio 20.3 69 0.0015 39.9 2.4 31 225-255 1-32 (2740)
No 1
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=9.8e-28 Score=235.55 Aligned_cols=229 Identities=34% Similarity=0.459 Sum_probs=158.1
Q ss_pred CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh-hcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694 148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV 226 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l 226 (458)
.++.|+.|||++|.++++|..+..-+++-+|+|++|+|..||.. +.++..|-.||||+|++..+|+.+..+..|++|.|
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence 34778888888888888888777777888888888888877754 56777777778888777777777777777777777
Q ss_pred eCCCCC--------------------------CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc
Q 012694 227 SGNKLN--------------------------TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT 280 (458)
Q Consensus 227 ~~n~l~--------------------------~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 280 (458)
++|.+. .+|.++..+.+|..+|++.|++..+|..++ .+++|+.|+|++|.|+.
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly-~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY-KLRNLRRLNLSGNKITE 259 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh-hhhhhheeccCcCceee
Confidence 776542 344455566667777777777777766555 67777777777777776
Q ss_pred CCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCC
Q 012694 281 FPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLE 360 (458)
Q Consensus 281 l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~ 360 (458)
+....+.-.+|++|+++.|+++.+|.++.++++|+.|.+.+|......+|..++.+.+|+.+..++|.+.-+|+.+..|.
T Consensus 260 L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~ 339 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCV 339 (1255)
T ss_pred eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhH
Confidence 65555555666777777777777777777777777777766655556666666666666666666666666666666666
Q ss_pred CCcEEECcCCCCCCCcH
Q 012694 361 NLTKLNLDQNPLVIPPM 377 (458)
Q Consensus 361 ~L~~L~L~~n~i~~~~~ 377 (458)
+|+.|.|+.|.+...|.
T Consensus 340 kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 340 KLQKLKLDHNRLITLPE 356 (1255)
T ss_pred HHHHhcccccceeechh
Confidence 66666666666555443
No 2
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.6e-27 Score=221.10 Aligned_cols=111 Identities=34% Similarity=0.596 Sum_probs=88.1
Q ss_pred cccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCC---------------------CCCCCccchh-hcCCCCCCE
Q 012694 284 SICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN---------------------FNDLTELPET-IGDLINLRE 341 (458)
Q Consensus 284 ~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n---------------------~~~~~~l~~~-l~~l~~L~~ 341 (458)
.++.+++|..|++++|-+.++|..++.+..|+.|+++.| .+.++.+++. +.++.+|..
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred HHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 344455666666666666666666666666666666665 1355666555 788999999
Q ss_pred EeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHHHhhcHHHHHHHHHhh
Q 012694 342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKR 394 (458)
Q Consensus 342 L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~l~~~~~~~ 394 (458)
|||.+|.|..+|+.+++|.+|++|+++||+|..++..++.+|..++.+|.+.+
T Consensus 510 LDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 510 LDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred eccCCCchhhCChhhccccceeEEEecCCccCCCHHHHhccChHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999987654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.6e-27 Score=230.19 Aligned_cols=338 Identities=21% Similarity=0.282 Sum_probs=204.4
Q ss_pred hhhcCCCCCChHHHHHhhccccccchhhhhhhCCCCChhHHHHHHHHHHhcccccCCCchhhHHHHHHHHHHHHHHHHHH
Q 012694 34 LITKYPHLTNSTVISSLTQGVPVQITQTRLLLGTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQ 113 (458)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~p~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 113 (458)
.+.++|+|....+..+....+| ... +....++.++...+.+.++.. .-.+.+..++.++++-+.+
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt~IP-~f~------~~sghl~~L~L~~N~I~sv~s--------e~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELTRIP-RFG------HESGHLEKLDLRHNLISSVTS--------EELSALPALRSLDLSRNLI 161 (873)
T ss_pred HHhcCCcceeeeeccchhhhcc-ccc------ccccceeEEeeeccccccccH--------HHHHhHhhhhhhhhhhchh
Confidence 6678888888887777777666 222 222334445555555544443 2344444555555554432
Q ss_pred HHHHHHHHHHHh-----hcccccccccChhHHHHHHhccCCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCc
Q 012694 114 FKEAEEMLDRVY-----DSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEA 187 (458)
Q Consensus 114 ~~~~~~~l~~~~-----~~~~~~l~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~ 187 (458)
.......+.+-. .....++..+....++ ...+|.+|.|+.|+|+.+|. .|.++++|+.|+|..|.|..
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFD------SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hcccCCCCCCCCCceEEeecccccccccccccc------ccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 211111000000 0000011122221111 22356666666666666654 55556666666666666654
Q ss_pred c-chhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhcc
Q 012694 188 M-PDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYG 264 (458)
Q Consensus 188 l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~ 264 (458)
+ .-.|.++++|+.|.+..|.|..+.+ .|..+.++++|+|..|+++.+. ..+.++++|+.|++++|.|..+.......
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 4 2346666666666666666666533 4556666777777777666553 34556777777777777777666555556
Q ss_pred CCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCCCCC--CCccchhhcCCCCCC
Q 012694 265 LLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFND--LTELPETIGDLINLR 340 (458)
Q Consensus 265 l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~~~--~~~l~~~l~~l~~L~ 340 (458)
+++|+.|+|+.|.|+.+++ ++..+..|++|+|+.|.+..+.+ .|..+++|++|||++|... +.+-...+.+++.|+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 6777777777777776653 46666777777777777776543 5667788888888887221 112223467799999
Q ss_pred EEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCcHHHHhhcHHHHHHHHHhh
Q 012694 341 ELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKR 394 (458)
Q Consensus 341 ~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~l~~~~~~~ 394 (458)
.|++.+|+|..+| .+|.++++|++|+|.+|.|..+-+..+... .++++..+.
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m--~Lk~Lv~nS 448 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM--ELKELVMNS 448 (873)
T ss_pred heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc--hhhhhhhcc
Confidence 9999999999997 588999999999999999988777666554 566665443
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.7e-27 Score=223.37 Aligned_cols=241 Identities=38% Similarity=0.548 Sum_probs=216.0
Q ss_pred CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694 149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG 228 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~ 228 (458)
...+..++.++|.+..+|+.+..+..|+.|+++.|.+..+++.++.+..|+.|+..+|++.++|.++.++.+|..+++.+
T Consensus 90 l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 90 LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG 169 (565)
T ss_pred HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc
Confidence 35677788888888888888888888888888888888888888888888888888899988888888888899999999
Q ss_pred CCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccc-
Q 012694 229 NKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRA- 307 (458)
Q Consensus 229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~- 307 (458)
|+++.+|+..-+++.|++||+..|-++.+|..++ .+.+|+.|++..|++..+| .|.++..|++|.++.|.|+-+|..
T Consensus 170 n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg-~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~ 247 (565)
T KOG0472|consen 170 NKLKALPENHIAMKRLKHLDCNSNLLETLPPELG-GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEH 247 (565)
T ss_pred cchhhCCHHHHHHHHHHhcccchhhhhcCChhhc-chhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHH
Confidence 9998888777778999999999999999998887 7889999999999999998 788899999999999999998864
Q ss_pred ccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHHHhhcHHHH
Q 012694 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAV 387 (458)
Q Consensus 308 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~l 387 (458)
...++++.+||+..| .+.++|+.+.-+.+|+.||+++|.|+.+|..++++ +|+.|-+.||++..+..+++.+|..++
T Consensus 248 ~~~L~~l~vLDLRdN--klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~v 324 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDN--KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEV 324 (565)
T ss_pred hcccccceeeecccc--ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHH
Confidence 458999999999998 88999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhh
Q 012694 388 KEFMAKR 394 (458)
Q Consensus 388 ~~~~~~~ 394 (458)
-+|.+..
T Consensus 325 LKyLrs~ 331 (565)
T KOG0472|consen 325 LKYLRSK 331 (565)
T ss_pred HHHHHHh
Confidence 9998873
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=4e-26 Score=224.34 Aligned_cols=261 Identities=30% Similarity=0.360 Sum_probs=214.2
Q ss_pred HhccCCCceeEEEecCCCCC--ccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchh-hcCCCC
Q 012694 144 QEAESGVVVETVDLADRQLK--LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDS-IGLLLN 220 (458)
Q Consensus 144 ~~~~~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~ 220 (458)
.++...+.|+.+.+.+|.++ .+|..+-++..|..|+|++|++...|..+..-+++-+|+||+|+|..+|.. +-++..
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 34445688999999999987 788889999999999999999999999999999999999999999999875 478999
Q ss_pred ccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc--cCCccccCCCCCcEEEccc
Q 012694 221 LKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR--TFPPSICEMRSLKYLDAHF 298 (458)
Q Consensus 221 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~l~~ 298 (458)
|-.|+|++|++..+|+.+..+..|++|++++|.+..+.......+++|+.|.+++.+-+ .+|.++..+.+|..+|++.
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 99999999999999999999999999999999877554444446778888888887655 7888888889999999999
Q ss_pred CCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694 299 NELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 299 n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
|.+..+|+++.++++|+.|+||+| .++++....+.-.+|+.|++|.|+++.+|.++.++++|+.|++.+|+++....-
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N--~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGN--KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcC--ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc
Confidence 999999999999999999999997 677776666777888999999999999998888999999999988887654332
Q ss_pred HHhhcHHHHHHHHHhh-hhchhHHHHHHH
Q 012694 379 IVNKGVEAVKEFMAKR-WDGIIAEAQQKS 406 (458)
Q Consensus 379 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 406 (458)
..-..+..+..|++.+ ....+|+...+.
T Consensus 310 SGIGKL~~Levf~aanN~LElVPEglcRC 338 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNKLELVPEGLCRC 338 (1255)
T ss_pred cchhhhhhhHHHHhhccccccCchhhhhh
Confidence 2223345556665544 334555554443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=9.7e-26 Score=220.24 Aligned_cols=308 Identities=26% Similarity=0.368 Sum_probs=228.4
Q ss_pred hCCCCChhHHHHHHHHHHhcccccCCCchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcccccccccChhHHH
Q 012694 65 LGTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQF---KEAEEMLDRVYDSVSAELVDVNEDVVK 141 (458)
Q Consensus 65 l~~~p~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~l~~~~~~~~~~l~~~~~~~~~ 141 (458)
+-..|..+.|..-++.++.++.-..... .++.+.+..+.+. .+....+..+.. .++....+.
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sg---------hl~~L~L~~N~I~sv~se~L~~l~alrs------lDLSrN~is 162 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESG---------HLEKLDLRHNLISSVTSEELSALPALRS------LDLSRNLIS 162 (873)
T ss_pred HhcCCcceeeeeccchhhhccccccccc---------ceeEEeeeccccccccHHHHHhHhhhhh------hhhhhchhh
Confidence 3456889999999999999986332222 2233333332221 222222222211 111222222
Q ss_pred HHHh--ccCCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCC-chhhc
Q 012694 142 ILQE--AESGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSL-PDSIG 216 (458)
Q Consensus 142 ~l~~--~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~ 216 (458)
.++. +....+++.|+|++|+|+.+.. .|..+.+|.+|.|++|.|+.+| ..|+++++|+.|+|..|+|..+ .-.|.
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq 242 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ 242 (873)
T ss_pred cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence 2221 1234579999999999997754 7888889999999999999887 4588899999999999988865 34688
Q ss_pred CCCCccEEEeeCCCCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEE
Q 012694 217 LLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYL 294 (458)
Q Consensus 217 ~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L 294 (458)
++++|+.|.+..|++..+.+ .|..|.++++|++..|++..+..+..++++.|+.|+++.|.|..+ ++++..+++|+.|
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 89999999999999888754 567789999999999999999888888999999999999999866 4678888899999
Q ss_pred EcccCCCCCcc-ccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCC-CC---chhhhCCCCCcEEECc
Q 012694 295 DAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIR-AL---PDTFFRLENLTKLNLD 368 (458)
Q Consensus 295 ~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~-~l---~~~l~~l~~L~~L~L~ 368 (458)
+|++|+|+.++ ..|..+..|++|+|+.| .+..+.+ .|.++++|++|||++|.|+ .+ ...+..+++|+.|++.
T Consensus 323 dLs~N~i~~l~~~sf~~L~~Le~LnLs~N--si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 323 DLSSNRITRLDEGSFRVLSQLEELNLSHN--SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eccccccccCChhHHHHHHHhhhhccccc--chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 99999999986 47888899999999998 5666644 4678899999999999987 22 3567789999999999
Q ss_pred CCCCCCCcHHHHhhcHHHHHHH
Q 012694 369 QNPLVIPPMEIVNKGVEAVKEF 390 (458)
Q Consensus 369 ~n~i~~~~~~~~~~~~~~l~~~ 390 (458)
||++..++...+. |++.+..+
T Consensus 401 gNqlk~I~krAfs-gl~~LE~L 421 (873)
T KOG4194|consen 401 GNQLKSIPKRAFS-GLEALEHL 421 (873)
T ss_pred Cceeeecchhhhc-cCccccee
Confidence 9999988776553 44554444
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.7e-22 Score=225.46 Aligned_cols=225 Identities=33% Similarity=0.451 Sum_probs=148.2
Q ss_pred CCceeEEEecCCCCC-ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEEE
Q 012694 149 GVVVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLN 225 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~ 225 (458)
.++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 456777777777665 55666777777777777777665 55666777777777777777665 3566677777777777
Q ss_pred eeCCCCC-CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCccccCCCCCcEEEcccCCCCC
Q 012694 226 VSGNKLN-TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELHG 303 (458)
Q Consensus 226 l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~ 303 (458)
+++|.++ .+|..++++++|++|++++|.++......+.++++|+.|++++|.+. .+|..+.++++|++|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 7777666 56666777777777777777666433333446677777777777665 456666667777777777776664
Q ss_pred -ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCC
Q 012694 304 -LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVI 374 (458)
Q Consensus 304 -l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~ 374 (458)
+|..+.++++|+.|++++|.. ...+|..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|++..
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNF-TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CCChhHcCCCCCcEEECCCCcc-CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 555666667777777776622 2345556666667777777777666 456666666667777776666654
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=2.7e-22 Score=223.86 Aligned_cols=225 Identities=29% Similarity=0.440 Sum_probs=166.7
Q ss_pred CCCceeEEEecCCCCC-ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEE
Q 012694 148 SGVVVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVL 224 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L 224 (458)
.+++|++|++++|.++ .+|. ..+++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..++++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 3456666666666665 3332 34566777777777665 55667788888888888888765 567777888888888
Q ss_pred EeeCCCCC-CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCccccCCCCCcEEEcccCCCC
Q 012694 225 NVSGNKLN-TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELH 302 (458)
Q Consensus 225 ~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~ 302 (458)
++++|.++ .+|..+.++++|++|++++|.+.......+.++++|++|++++|.+. .+|..+.++++|++|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 88888776 56777888888888888888877433333447888888888888776 66777888888888888888876
Q ss_pred C-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCC
Q 012694 303 G-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 303 ~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
+ +|..+..+++|++|++++|.. ...+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred ccCchhHhhccCcCEEECcCCee-ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 5 677778888888888888732 2456777888888888888888877 4577788888888888888888754
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=3e-20 Score=196.73 Aligned_cols=208 Identities=27% Similarity=0.426 Sum_probs=120.0
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
+.++.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 457788888888887776543 478888888887777776543 367777777777777766553 46777777777
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhc------------------cCCCCCEEeccCCcCccCCccccCCCCC
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGY------------------GLLNLERLSIKLNKLRTFPPSICEMRSL 291 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~------------------~l~~L~~L~L~~n~l~~l~~~l~~l~~L 291 (458)
+++.+|..+. ++|+.|++++|+++.+|..+.. ..++|+.|++++|.++.+|..+. ++|
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL 348 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PEL 348 (754)
T ss_pred ccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--Ccc
Confidence 7776665443 4677777777776665543220 11234444444444444443332 345
Q ss_pred cEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhh----hCCCCCcEEEC
Q 012694 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTF----FRLENLTKLNL 367 (458)
Q Consensus 292 ~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l----~~l~~L~~L~L 367 (458)
+.|++++|+++.+|..+. ++|++|+|++| .+..+|..+. ..|+.|++++|+|+.+|..+ ..++++..|++
T Consensus 349 ~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N--~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L 422 (754)
T PRK15370 349 QVLDVSKNQITVLPETLP--PTITTLDVSRN--ALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIV 422 (754)
T ss_pred cEEECCCCCCCcCChhhc--CCcCEEECCCC--cCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEe
Confidence 555555555555444331 34555555554 3444544432 24555555555555554322 22355666666
Q ss_pred cCCCCC
Q 012694 368 DQNPLV 373 (458)
Q Consensus 368 ~~n~i~ 373 (458)
.+|++.
T Consensus 423 ~~Npls 428 (754)
T PRK15370 423 EYNPFS 428 (754)
T ss_pred eCCCcc
Confidence 666665
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1.4e-19 Score=191.69 Aligned_cols=209 Identities=30% Similarity=0.478 Sum_probs=174.0
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
.+...|+++++.++.+|..+. ++|+.|++++|+|+.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 457899999999999987664 589999999999999987654 589999999999999987664 47999999999
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG 309 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~ 309 (458)
.+..+|..+. .+|+.|++++|+++.+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.++.+|..+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~ 324 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP 324 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC---CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc
Confidence 9999988764 589999999999999887653 589999999999999886553 478889999999988876443
Q ss_pred CCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHH
Q 012694 310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEI 379 (458)
Q Consensus 310 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~ 379 (458)
++|+.|++++| .+..+|..+. ++|+.|++++|+|+.+|..+. ++|++|+|++|+++..|..+
T Consensus 325 --~sL~~L~Ls~N--~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l 386 (754)
T PRK15370 325 --PGLKTLEAGEN--ALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL 386 (754)
T ss_pred --ccceeccccCC--ccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhH
Confidence 68888998887 5667776553 688899999998888876553 68888999999888877654
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.81 E-value=5.1e-22 Score=166.62 Aligned_cols=204 Identities=36% Similarity=0.557 Sum_probs=166.2
Q ss_pred hCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEE
Q 012694 169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELD 248 (458)
Q Consensus 169 ~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~ 248 (458)
+-.+.+++.|.+++|+++.+|+.+..+.+|+.|++++|+|+++|.+++.+++|+.|+++-|++..+|.+|+.++.|+.||
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred cCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCc
Q 012694 249 ASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTE 328 (458)
Q Consensus 249 l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~ 328 (458)
+.+|++.. ..+|..+..++.|+.|.+++|.++-+|..++++++|+.|.+..| .+.+
T Consensus 109 ltynnl~e----------------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn--dll~ 164 (264)
T KOG0617|consen 109 LTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN--DLLS 164 (264)
T ss_pred cccccccc----------------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC--chhh
Confidence 88887651 13344555666777777777777777877888888888888887 6778
Q ss_pred cchhhcCCCCCCEEeccCCCCCCCchhhhCCC---CCcEEECcCCCCCCCcHHHHhhcHHHHHHHHHhhhh
Q 012694 329 LPETIGDLINLRELDLSNNQIRALPDTFFRLE---NLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWD 396 (458)
Q Consensus 329 l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~---~L~~L~L~~n~i~~~~~~~~~~~~~~l~~~~~~~~~ 396 (458)
+|..++.++.|++|++.+|+++.+|+.++++. +-+...+.+|++..+..+.+..|...+..|....-.
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirtetY 235 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRTETY 235 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhhhhh
Confidence 88888888888888888898888887776643 345667788888888788888888888777665433
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=1.9e-19 Score=189.70 Aligned_cols=208 Identities=34% Similarity=0.389 Sum_probs=127.7
Q ss_pred ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcC-----------------CcccceeeeecCCCCCCch
Q 012694 151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAG-----------------LQKLEELDVSSNLLQSLPD 213 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~-----------------l~~L~~L~L~~n~l~~l~~ 213 (458)
+|+.|++.+|.++.+|.. .++|++|++++|+|+.+|....+ ..+|+.|++++|+++.+|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~ 299 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 299 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence 466777777777766642 35667777777766666532110 1223344444444444433
Q ss_pred hhcCCCCccEEEeeCCCCCCCchhhcC-----------------CCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCC
Q 012694 214 SIGLLLNLKVLNVSGNKLNTLPESIAR-----------------CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN 276 (458)
Q Consensus 214 ~l~~l~~L~~L~l~~n~l~~l~~~l~~-----------------l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n 276 (458)
.+++|+.|++++|+++.+|..... ..+|++|++++|+++.+|.. ..+|+.|++++|
T Consensus 300 ---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N 372 (788)
T PRK15387 300 ---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNN 372 (788)
T ss_pred ---cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC----Ccccceehhhcc
Confidence 124566666666666554431110 02344555555555544431 234445555555
Q ss_pred cCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhh
Q 012694 277 KLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTF 356 (458)
Q Consensus 277 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l 356 (458)
.++.+|.. ..+|+.|++++|.++.+|.. .++|+.|++++| .+..+|.. ..+|+.|++++|+|+.+|..+
T Consensus 373 ~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N--~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl 441 (788)
T PRK15387 373 RLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGN--RLTSLPML---PSGLLSLSVYRNQLTRLPESL 441 (788)
T ss_pred ccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCC--cCCCCCcc---hhhhhhhhhccCcccccChHH
Confidence 55544432 24677888888888877653 357888888887 56677753 346888999999999999999
Q ss_pred hCCCCCcEEECcCCCCCCCcHHH
Q 012694 357 FRLENLTKLNLDQNPLVIPPMEI 379 (458)
Q Consensus 357 ~~l~~L~~L~L~~n~i~~~~~~~ 379 (458)
.++++|+.|+|++|++++..+..
T Consensus 442 ~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 442 IHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhccCCCeEECCCCCCCchHHHH
Confidence 99999999999999998765443
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=1.5e-21 Score=163.78 Aligned_cols=171 Identities=32% Similarity=0.467 Sum_probs=153.3
Q ss_pred HHHHHhccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCC
Q 012694 140 VKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL 219 (458)
Q Consensus 140 ~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~ 219 (458)
+.-+..+..+.+++.|.+++|+++.+|..+..+.+|+.|++.+|+|+.+|.+++.+++|+.|+++-|++..+|.+|+.++
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 34455666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEeeCCCCC--CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcc
Q 012694 220 NLKVLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH 297 (458)
Q Consensus 220 ~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~ 297 (458)
.|+.||+.+|++. .+|..|..++.|+-|++++|.++.+|..++ ++++|+.|.+..|.+-++|..++.++.|+.|.+.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg-~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG-KLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh-hhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 9999999999988 688888888899999999999998888887 7888888888888888888888888888888888
Q ss_pred cCCCCCccccccCC
Q 012694 298 FNELHGLPRAIGKL 311 (458)
Q Consensus 298 ~n~l~~l~~~l~~l 311 (458)
+|.++-+|+.++++
T Consensus 182 gnrl~vlppel~~l 195 (264)
T KOG0617|consen 182 GNRLTVLPPELANL 195 (264)
T ss_pred cceeeecChhhhhh
Confidence 88888887766554
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=1.4e-20 Score=193.21 Aligned_cols=222 Identities=29% Similarity=0.424 Sum_probs=172.9
Q ss_pred CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694 148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS 227 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~ 227 (458)
...++++++++.+.++.+|+.++.+.+|+.++..+|.++.+|..+....+|+.|.+..|.++.+|.....+++|++|+|.
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 45568888888888888888888888888888888888888877778888888888888888887777778888888888
Q ss_pred CCCCCCCchhhc--------------------------CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC
Q 012694 228 GNKLNTLPESIA--------------------------RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF 281 (458)
Q Consensus 228 ~n~l~~l~~~l~--------------------------~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l 281 (458)
.|++..+|+.+- .+..|+.|.+.+|.++.-.-..+.++.+|+.|+|++|++.++
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 888877665321 133455666667776643333444778899999999988888
Q ss_pred Cc-cccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCC--chhhhC
Q 012694 282 PP-SICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL--PDTFFR 358 (458)
Q Consensus 282 ~~-~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l--~~~l~~ 358 (458)
|. .+.++..|+.|+|++|.++.+|..+..+..|++|...+| .+..+| .+..+++|+.+|++.|+|+.+ |..+..
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN--~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN--QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC--ceeech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 85 467788888999999999998888888888999988887 777888 678889999999999998844 333322
Q ss_pred CCCCcEEECcCCCCC
Q 012694 359 LENLTKLNLDQNPLV 373 (458)
Q Consensus 359 l~~L~~L~L~~n~i~ 373 (458)
++|++||++||.-.
T Consensus 476 -p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 476 -PNLKYLDLSGNTRL 489 (1081)
T ss_pred -cccceeeccCCccc
Confidence 79999999999753
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=4.5e-20 Score=189.62 Aligned_cols=85 Identities=36% Similarity=0.564 Sum_probs=55.9
Q ss_pred ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCC
Q 012694 151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK 230 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~ 230 (458)
+|++|++++|.+..+|..+..+.+|+.|+++.|.|..+|.+..++.+|++|.|.+|.+..+|.++..+++|++|++++|.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 36677777777766666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CCCCc
Q 012694 231 LNTLP 235 (458)
Q Consensus 231 l~~l~ 235 (458)
+..+|
T Consensus 126 f~~~P 130 (1081)
T KOG0618|consen 126 FGPIP 130 (1081)
T ss_pred cCCCc
Confidence 54433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=9.4e-18 Score=176.96 Aligned_cols=201 Identities=30% Similarity=0.332 Sum_probs=119.6
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
..-..|+++++.++.+|..+. .+|+.|++.+|+++.+|. ..++|++|++++|+|+.+|.. .++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 446689999999999998775 489999999999999985 358999999999999988753 356677777777
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcccc-----------------CCCCCc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC-----------------EMRSLK 292 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~-----------------~l~~L~ 292 (458)
.++.+|... ++|+.|++++|+++.+|. .+++|+.|++++|.++.+|.... ...+|+
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq 345 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQ 345 (788)
T ss_pred chhhhhhch---hhcCEEECcCCccccccc----cccccceeECCCCccccCCCCcccccccccccCccccccccccccc
Confidence 666554421 334445555555544443 12344455554444444332100 013566
Q ss_pred EEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCC
Q 012694 293 YLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372 (458)
Q Consensus 293 ~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i 372 (458)
+|++++|+|+.+|.. ..+|+.|++++| .+..+|.. ..+|+.|++++|+|+.+|.. .++|+.|++++|++
T Consensus 346 ~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N--~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~L 414 (788)
T PRK15387 346 ELSVSDNQLASLPTL---PSELYKLWAYNN--RLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRL 414 (788)
T ss_pred eEecCCCccCCCCCC---Ccccceehhhcc--ccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcC
Confidence 666666666666542 234444455444 33344432 13455555555555555432 13455555555555
Q ss_pred CCCc
Q 012694 373 VIPP 376 (458)
Q Consensus 373 ~~~~ 376 (458)
+..|
T Consensus 415 ssIP 418 (788)
T PRK15387 415 TSLP 418 (788)
T ss_pred CCCC
Confidence 5443
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=8.2e-20 Score=171.67 Aligned_cols=238 Identities=26% Similarity=0.374 Sum_probs=183.5
Q ss_pred CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeec-CCCCCCch-hhcCCCCccEEE
Q 012694 150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSS-NLLQSLPD-SIGLLLNLKVLN 225 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~ 225 (458)
.....++|..|+|+.+|+ +|+.+++||.|+|++|.|+.| |++|.++++|..|-+.+ |+|+++|. .|+++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 357789999999999987 899999999999999999988 67899999988877766 88999974 788999999999
Q ss_pred eeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-------------------------
Q 012694 226 VSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR------------------------- 279 (458)
Q Consensus 226 l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~------------------------- 279 (458)
+.-|++..+. +.+..+++|..|.+.+|.+..+..+.+..+..++.+.+..|.+-
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9999998664 67888999999999999998888877777777777776555410
Q ss_pred -----------------------cC--------------C-ccccCCCCCcEEEcccCCCCCcc-ccccCCCcccEEEcc
Q 012694 280 -----------------------TF--------------P-PSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLS 320 (458)
Q Consensus 280 -----------------------~l--------------~-~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~ 320 (458)
.+ | ..+..+++|+.|++++|+++.+. .+|.....+++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 00 0 12456677888888888888764 477777888888888
Q ss_pred CCCCCCCccc-hhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCcHHHHhhcHHHHHHHHHhhh
Q 012694 321 SNFNDLTELP-ETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRW 395 (458)
Q Consensus 321 ~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~l~~~~~~~~ 395 (458)
.| .+..+. ..|.++..|+.|+|.+|+|+.+ |.+|..+..|.+|++-.|++.+ ...+..+.+++.+.-
T Consensus 307 ~N--~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C------nC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 307 RN--KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC------NCRLAWLGEWLRKKS 375 (498)
T ss_pred cc--hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC------ccchHHHHHHHhhCC
Confidence 77 444443 2356778888888888888866 5677778888888888887764 334455566665443
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=3.9e-17 Score=183.80 Aligned_cols=220 Identities=28% Similarity=0.364 Sum_probs=108.2
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccC-CCCccchhhcCCcccceeeeecCC-CCCCchhhcCCCCccEEEee
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRN-LLEAMPDSIAGLQKLEELDVSSNL-LQSLPDSIGLLLNLKVLNVS 227 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n-~i~~l~~~l~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~ 227 (458)
.+|+.|++.++.+..++..+..+++|++|+++++ .++.+| .+..+++|++|++++|. +..+|..++++++|+.|+++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 3445555555555555544555555555555544 244443 24555555555555543 44555555555556666665
Q ss_pred CC-CCCCCchhhcCCCCCcEEEcCCC---------------------CCCcCCchh------------------------
Q 012694 228 GN-KLNTLPESIARCSSLVELDASFN---------------------NLVCLPTNI------------------------ 261 (458)
Q Consensus 228 ~n-~l~~l~~~l~~l~~L~~L~l~~n---------------------~l~~l~~~~------------------------ 261 (458)
+| .++.+|..+ ++++|+.|++++| .++.+|...
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence 54 444444433 3444444444433 222222110
Q ss_pred -----hccCCCCCEEeccCCc-CccCCccccCCCCCcEEEcccC-CCCCccccccCCCcccEEEccCCCCCCCccchhhc
Q 012694 262 -----GYGLLNLERLSIKLNK-LRTFPPSICEMRSLKYLDAHFN-ELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIG 334 (458)
Q Consensus 262 -----~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~ 334 (458)
...+++|+.|++++|. +..+|..++++++|+.|++++| .+..+|..+ ++++|+.|++++| ..+..+|.
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c-~~L~~~p~--- 843 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC-SRLRTFPD--- 843 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC-Cccccccc---
Confidence 0001233334443332 2234444555555555555544 233444332 3444555555544 22233322
Q ss_pred CCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCC-CCCCCc
Q 012694 335 DLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN-PLVIPP 376 (458)
Q Consensus 335 ~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n-~i~~~~ 376 (458)
...+|+.|+|++|.|+.+|.++..+++|+.|++++| .+...+
T Consensus 844 ~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 844 ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence 124667777777777777777777888888888774 444433
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=7.5e-17 Score=181.51 Aligned_cols=149 Identities=30% Similarity=0.456 Sum_probs=111.3
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCC-CCCCchhhcCCCCccEEEeeC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNL-LQSLPDSIGLLLNLKVLNVSG 228 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~~ 228 (458)
.+|+.|++.++.++.+|..| ...+|+.|++.+|.+..++..+..+++|++|+++++. ++.+|. +..+++|++|++++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 35788888888888888776 4688999999999999888888899999999999865 677764 78899999999998
Q ss_pred C-CCCCCchhhcCCCCCcEEEcCCC-CCCcCCchhhccCCCCCEEeccCCcC-ccCCccccCCCCCcEEEcccCCCCCcc
Q 012694 229 N-KLNTLPESIARCSSLVELDASFN-NLVCLPTNIGYGLLNLERLSIKLNKL-RTFPPSICEMRSLKYLDAHFNELHGLP 305 (458)
Q Consensus 229 n-~l~~l~~~l~~l~~L~~L~l~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~~l~ 305 (458)
| .+..+|..+.++++|+.|++++| .++.+|... ++++|+.|++++|.. ..+|.. .++|++|++++|.++.+|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP 741 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc
Confidence 7 57788999999999999999986 577777654 567777777776632 233321 234444444444444433
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.3e-17 Score=160.89 Aligned_cols=233 Identities=24% Similarity=0.253 Sum_probs=171.4
Q ss_pred CceeEEEecCCCCC-----ccchhhCCCCCCcEEEcccCCCCc-------cchhhcCCcccceeeeecCCCCC-Cchhhc
Q 012694 150 VVVETVDLADRQLK-----LLPEAFGRLRGLVSLNLSRNLLEA-------MPDSIAGLQKLEELDVSSNLLQS-LPDSIG 216 (458)
Q Consensus 150 ~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i~~-------l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~ 216 (458)
..|+.|+++++.++ .++..+...+.|++|+++++.+.. ++..+..+++|+.|++++|.+.. .+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 44999999999884 456667778889999999987763 23567788899999999998873 344444
Q ss_pred CCC---CccEEEeeCCCCCC-----CchhhcCC-CCCcEEEcCCCCCCcCC----chhhccCCCCCEEeccCCcCc----
Q 012694 217 LLL---NLKVLNVSGNKLNT-----LPESIARC-SSLVELDASFNNLVCLP----TNIGYGLLNLERLSIKLNKLR---- 279 (458)
Q Consensus 217 ~l~---~L~~L~l~~n~l~~-----l~~~l~~l-~~L~~L~l~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~---- 279 (458)
.+. +|++|++++|+++. +...+..+ ++|++|++++|.++.-. ...+..+++|++|++++|.++
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 444 49999999998872 33456667 89999999999988311 123346778999999999887
Q ss_pred -cCCccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCCccchhhc----CCCCCCEEeccCCCC
Q 012694 280 -TFPPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLTELPETIG----DLINLRELDLSNNQI 349 (458)
Q Consensus 280 -~l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~----~l~~L~~L~L~~n~l 349 (458)
.++..+..+++|++|++++|.+++ +...+..+++|++|++++|......+..... ..+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 344456667899999999999875 3456778899999999998322111211111 247999999999999
Q ss_pred C-----CCchhhhCCCCCcEEECcCCCCCCCcHHHHhh
Q 012694 350 R-----ALPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382 (458)
Q Consensus 350 ~-----~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 382 (458)
+ .+...+..+++|+++++++|.++..+...+.+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 7 33456677789999999999998766554443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=2.1e-18 Score=162.22 Aligned_cols=226 Identities=27% Similarity=0.367 Sum_probs=186.5
Q ss_pred EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeC-CC
Q 012694 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSG-NK 230 (458)
Q Consensus 154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~-n~ 230 (458)
.++.++-+++.+|..+. +.-..++|..|+|+.||+ +|+.+++|+.|||++|+|+.| |++|.++..|..|.+.+ |+
T Consensus 50 ~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 56788889999987655 477889999999999984 699999999999999999998 88999999988888776 89
Q ss_pred CCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCC-----
Q 012694 231 LNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHG----- 303 (458)
Q Consensus 231 l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~----- 303 (458)
|+.+|. .|.++.+|+.|.+.-|.+..+....+..+++|..|.+..|.+..++. .+..+..++.+.+..|.+..
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 999985 67889999999999999999999999999999999999999998876 56677777776665553110
Q ss_pred ---------------------------------------------------------cc-ccccCCCcccEEEccCCCCC
Q 012694 304 ---------------------------------------------------------LP-RAIGKLTRLEVLNLSSNFND 325 (458)
Q Consensus 304 ---------------------------------------------------------l~-~~l~~l~~L~~L~L~~n~~~ 325 (458)
.| ..|..+++|++|+|++| .
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN--~ 285 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN--K 285 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC--c
Confidence 11 13456889999999998 5
Q ss_pred CCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCcHHHHhhc
Q 012694 326 LTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPPMEIVNKG 383 (458)
Q Consensus 326 ~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~ 383 (458)
++.+. .+|.+...+++|.|..|+|..+. ..|.++..|+.|+|.+|+|+...+..+...
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 56663 56888889999999999998774 577889999999999999998776655543
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.68 E-value=9.5e-19 Score=171.42 Aligned_cols=188 Identities=36% Similarity=0.523 Sum_probs=147.7
Q ss_pred eeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc
Q 012694 200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279 (458)
Q Consensus 200 ~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 279 (458)
..|++.|++..+|..+..+..|+.+.++.|.+..+|..+.++..|++|+++.|++..+|..++ .--|+.|-+++|+++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNNkl~ 156 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNNKLT 156 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecCccc
Confidence 345555555555555555555666666666666666666666666666666666666665554 233777777888888
Q ss_pred cCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCC
Q 012694 280 TFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRL 359 (458)
Q Consensus 280 ~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l 359 (458)
.+|+.++...+|..|+.+.|.+..+|..++.+.+|+.|++..| .+..+|+.+..+ .|..||+++|+|+.||-.|.+|
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn--~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m 233 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN--HLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKM 233 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh--hhhhCCHHHhCC-ceeeeecccCceeecchhhhhh
Confidence 8888888888899999999999999999999999999999987 778899888855 5899999999999999999999
Q ss_pred CCCcEEECcCCCCCCCcHHHHhhcHHHHHHHHH
Q 012694 360 ENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMA 392 (458)
Q Consensus 360 ~~L~~L~L~~n~i~~~~~~~~~~~~~~l~~~~~ 392 (458)
..|++|-|.+|++..+|..++.+|.-.+.+|+.
T Consensus 234 ~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQSPPAQICEKGKVHIFKYLS 266 (722)
T ss_pred hhheeeeeccCCCCCChHHHHhccceeeeeeec
Confidence 999999999999999999999999887777653
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.3e-16 Score=155.48 Aligned_cols=230 Identities=23% Similarity=0.262 Sum_probs=170.5
Q ss_pred HHHhccCCCceeEEEecCCCCCc-------cchhhCCCCCCcEEEcccCCCCc-cchhhcCCc---ccceeeeecCCCCC
Q 012694 142 ILQEAESGVVVETVDLADRQLKL-------LPEAFGRLRGLVSLNLSRNLLEA-MPDSIAGLQ---KLEELDVSSNLLQS 210 (458)
Q Consensus 142 ~l~~~~~~~~L~~L~l~~~~l~~-------l~~~~~~l~~L~~L~l~~n~i~~-l~~~l~~l~---~L~~L~L~~n~l~~ 210 (458)
+...+...+.++.|+++++.+.. ++..+..+++|+.|++++|.+.. .+..+..+. +|++|++++|.++.
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 33344456779999999987762 33467788999999999998873 344454444 49999999999873
Q ss_pred -----CchhhcCC-CCccEEEeeCCCCC-----CCchhhcCCCCCcEEEcCCCCCCc-----CCchhhccCCCCCEEecc
Q 012694 211 -----LPDSIGLL-LNLKVLNVSGNKLN-----TLPESIARCSSLVELDASFNNLVC-----LPTNIGYGLLNLERLSIK 274 (458)
Q Consensus 211 -----l~~~l~~l-~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n~l~~-----l~~~~~~~l~~L~~L~L~ 274 (458)
+...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|.++. +... ...+++|+.|+++
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~ 201 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLN 201 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEecc
Confidence 33456667 89999999999988 344567778899999999999883 2222 2245799999999
Q ss_pred CCcCc-----cCCccccCCCCCcEEEcccCCCCCc--ccccc----CCCcccEEEccCCCCC---CCccchhhcCCCCCC
Q 012694 275 LNKLR-----TFPPSICEMRSLKYLDAHFNELHGL--PRAIG----KLTRLEVLNLSSNFND---LTELPETIGDLINLR 340 (458)
Q Consensus 275 ~n~l~-----~l~~~l~~l~~L~~L~l~~n~l~~l--~~~l~----~l~~L~~L~L~~n~~~---~~~l~~~l~~l~~L~ 340 (458)
+|.++ .+...+..+++|++|++++|.+++. ..... ..+.|++|++++|... ...+...+..+++|+
T Consensus 202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~ 281 (319)
T cd00116 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281 (319)
T ss_pred CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence 99886 3445567789999999999999862 11111 3479999999998432 123445567778999
Q ss_pred EEeccCCCCCCC-----chhhhCC-CCCcEEECcCCCC
Q 012694 341 ELDLSNNQIRAL-----PDTFFRL-ENLTKLNLDQNPL 372 (458)
Q Consensus 341 ~L~L~~n~l~~l-----~~~l~~l-~~L~~L~L~~n~i 372 (458)
.+++++|.++.- ...+... +.|++|++.+|++
T Consensus 282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999999944 2344445 7999999999875
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.54 E-value=1.2e-14 Score=146.14 Aligned_cols=201 Identities=39% Similarity=0.543 Sum_probs=133.2
Q ss_pred EEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCC-CccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCC
Q 012694 177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL-NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLV 255 (458)
Q Consensus 177 ~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~-~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~ 255 (458)
.+.+..+.+..-...+..++.++.|++.+|.+++++.....+. +|+.|++++|.+..+|..+..++.|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 4555555553333344455666666666666666666555553 667777777666666666666677777777777776
Q ss_pred cCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcC
Q 012694 256 CLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD 335 (458)
Q Consensus 256 ~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~ 335 (458)
.++.... ..++|+.|++++|.+..+|........|++|.+++|.+..++..+.++.++..+.+.+| .+..++..++.
T Consensus 177 ~l~~~~~-~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n--~~~~~~~~~~~ 253 (394)
T COG4886 177 DLPKLLS-NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN--KLEDLPESIGN 253 (394)
T ss_pred hhhhhhh-hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc--eeeeccchhcc
Confidence 6665543 46667777777777777766555555677777777765555566777777777777766 44555566777
Q ss_pred CCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHHHh
Q 012694 336 LINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381 (458)
Q Consensus 336 l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 381 (458)
+++++.|++++|.++.++. ++.+.+++.|++++|.+...+.....
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence 7778888888888887754 77777888888888777766554433
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.52 E-value=6.9e-16 Score=151.55 Aligned_cols=195 Identities=35% Similarity=0.488 Sum_probs=167.6
Q ss_pred CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694 149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG 228 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~ 228 (458)
...-...|++.|++..+|..++.+..|..+.+..|.|..+|..+.++..|.+|+|+.|++..+|..++.|+ |+.|.+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 34456788999999999998888899999999999999999999999999999999999999998887765 89999999
Q ss_pred CCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccc
Q 012694 229 NKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAI 308 (458)
Q Consensus 229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l 308 (458)
|+++.+|..++.+..|..||.+.|.+..++..+. ++.+|+.|++..|.+..+|..++.+ .|..||+++|++..||-.|
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~-~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG-YLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhh-hHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhh
Confidence 9999999999988899999999999999998877 7889999999999999999888855 5899999999999999999
Q ss_pred cCCCcccEEEccCCCCCCCccchhhc---CCCCCCEEeccCCC
Q 012694 309 GKLTRLEVLNLSSNFNDLTELPETIG---DLINLRELDLSNNQ 348 (458)
Q Consensus 309 ~~l~~L~~L~L~~n~~~~~~l~~~l~---~l~~L~~L~L~~n~ 348 (458)
.++++|++|-|.+| .+..-|..+. ...-.++|+..-|+
T Consensus 231 r~m~~Lq~l~LenN--PLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 231 RKMRHLQVLQLENN--PLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhheeeeeccC--CCCCChHHHHhccceeeeeeecchhcc
Confidence 99999999999998 6666666553 23345677777773
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.51 E-value=1.5e-14 Score=145.38 Aligned_cols=196 Identities=37% Similarity=0.517 Sum_probs=160.0
Q ss_pred EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCc-ccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCC
Q 012694 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ-KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLN 232 (458)
Q Consensus 154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~-~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~ 232 (458)
.+++..+.+..-...+..++.++.|.+.+|.++.+++....+. +|+.|++++|.+..+|..+..+++|+.|++++|+++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5777777774444455666788899999999998887777774 899999999999888877888999999999999999
Q ss_pred CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCC
Q 012694 233 TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLT 312 (458)
Q Consensus 233 ~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~ 312 (458)
.+|...+.++.|+.|++++|.+..++.... ....|++|.+++|.+...+..+.++.++..+.+.+|++..++..++.++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~ 255 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIE-LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhh-hhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence 888777688889999999999988887653 3556889999988777777778888888888888888888777888888
Q ss_pred cccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc
Q 012694 313 RLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP 353 (458)
Q Consensus 313 ~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~ 353 (458)
+++.|++++| .+..++. ++.+.+++.|++++|.+..++
T Consensus 256 ~l~~L~~s~n--~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 256 NLETLDLSNN--QISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccceeccccc--ccccccc-ccccCccCEEeccCccccccc
Confidence 8999999987 6677765 788889999999998887654
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.49 E-value=1.2e-14 Score=135.50 Aligned_cols=233 Identities=22% Similarity=0.271 Sum_probs=178.5
Q ss_pred HHHHhccCCCceeEEEecCCCCC-----ccchhhCCCCCCcEEEcccCCCC----ccc-------hhhcCCcccceeeee
Q 012694 141 KILQEAESGVVVETVDLADRQLK-----LLPEAFGRLRGLVSLNLSRNLLE----AMP-------DSIAGLQKLEELDVS 204 (458)
Q Consensus 141 ~~l~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i~----~l~-------~~l~~l~~L~~L~L~ 204 (458)
.+.........++.++|++|.+. .+...+.+.+.|+..++++--.. .+| +++..+++|++|+||
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 34445556788999999999987 45567888889999999874322 344 356678899999999
Q ss_pred cCCCCC-----CchhhcCCCCccEEEeeCCCCCCCc--------------hhhcCCCCCcEEEcCCCCCCcCCc----hh
Q 012694 205 SNLLQS-----LPDSIGLLLNLKVLNVSGNKLNTLP--------------ESIARCSSLVELDASFNNLVCLPT----NI 261 (458)
Q Consensus 205 ~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~l~--------------~~l~~l~~L~~L~l~~n~l~~l~~----~~ 261 (458)
.|.+.. +.+-+..+..|++|.+.+|.+.... .....-+.|+.+.+++|++..-+. ..
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 998762 2345678999999999999987321 123446789999999999986543 34
Q ss_pred hccCCCCCEEeccCCcCc-----cCCccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCC---c
Q 012694 262 GYGLLNLERLSIKLNKLR-----TFPPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLT---E 328 (458)
Q Consensus 262 ~~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~---~ 328 (458)
+...+.|+.+.+..|.|. .+..++..+++|+.||+.+|.++. +...+..+++|+.|++++|..... .
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 556789999999999886 234578899999999999999987 556788899999999999833222 2
Q ss_pred cchhh-cCCCCCCEEeccCCCCC-----CCchhhhCCCCCcEEECcCCCCC
Q 012694 329 LPETI-GDLINLRELDLSNNQIR-----ALPDTFFRLENLTKLNLDQNPLV 373 (458)
Q Consensus 329 l~~~l-~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~L~~n~i~ 373 (458)
+...+ ...+.|+.|.+.+|.|+ .+..++...+.|..|+|++|.+.
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 22233 34789999999999998 22345667899999999999995
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.46 E-value=1.7e-14 Score=131.73 Aligned_cols=204 Identities=26% Similarity=0.302 Sum_probs=150.3
Q ss_pred hCCCCCCcEEEcccCC--CC-------ccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCC----c
Q 012694 169 FGRLRGLVSLNLSRNL--LE-------AMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL----P 235 (458)
Q Consensus 169 ~~~l~~L~~L~l~~n~--i~-------~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l----~ 235 (458)
+.-+..|++|.+++.. |. .+|-.+.-+.+|..+.++.+.-..+.+....-|.|+++.+.+..++.. |
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p 257 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLP 257 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccc
Confidence 3345566666666531 11 223334445666666666665444332222345666666665543311 1
Q ss_pred h--------------------hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEE
Q 012694 236 E--------------------SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD 295 (458)
Q Consensus 236 ~--------------------~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 295 (458)
. .+...+.|+++|+++|.++.++..+. -.|.++.|+++.|+|..+. .+..+++|+.||
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvK-L~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LD 335 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVK-LAPKLRRLILSQNRIRTVQ-NLAELPQLQLLD 335 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhh-hccceeEEeccccceeeeh-hhhhcccceEee
Confidence 1 12234678999999999999998876 6899999999999999884 489999999999
Q ss_pred cccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc--hhhhCCCCCcEEECcCCCCC
Q 012694 296 AHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP--DTFFRLENLTKLNLDQNPLV 373 (458)
Q Consensus 296 l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~n~i~ 373 (458)
+++|.++.+..+-.++.+++.|.|++| .+..+ ..++.+-+|..||+++|+|..+. ..++++|.|+.+.|.+|++.
T Consensus 336 LS~N~Ls~~~Gwh~KLGNIKtL~La~N--~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 336 LSGNLLAECVGWHLKLGNIKTLKLAQN--KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cccchhHhhhhhHhhhcCEeeeehhhh--hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 999999998877788999999999998 55555 56778889999999999999774 57899999999999999998
Q ss_pred CCcH
Q 012694 374 IPPM 377 (458)
Q Consensus 374 ~~~~ 377 (458)
..+.
T Consensus 413 ~~vd 416 (490)
T KOG1259|consen 413 GSVD 416 (490)
T ss_pred ccch
Confidence 7753
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.1e-14 Score=139.07 Aligned_cols=201 Identities=24% Similarity=0.281 Sum_probs=126.9
Q ss_pred CCCceeEEEecCCCCCccc--hhhCCCCCCcEEEcccCCCCcc---chhhcCCcccceeeeecCCCCCCchh--hcCCCC
Q 012694 148 SGVVVETVDLADRQLKLLP--EAFGRLRGLVSLNLSRNLLEAM---PDSIAGLQKLEELDVSSNLLQSLPDS--IGLLLN 220 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~--~~~~~l~~L~~L~l~~n~i~~l---~~~l~~l~~L~~L~L~~n~l~~l~~~--l~~l~~ 220 (458)
+.++|+.+.|.++.+...+ .....|++++.|+|++|-+... ......+++|+.|+++.|.+...-++ -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567888888888877555 3566788888888888876643 34456788888888888876643221 124677
Q ss_pred ccEEEeeCCCCC--CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC--ccccCCCCCcEEEc
Q 012694 221 LKVLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLDA 296 (458)
Q Consensus 221 L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~l 296 (458)
|+.|.+++|.++ .+...+..+++|..|++..|....+...-...+..|+.|+|++|.+..++ ...+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 888888888877 33334455777888888777422222222224556777777777776555 44566777777777
Q ss_pred ccCCCCCc--ccc-----ccCCCcccEEEccCCCCCCCccc--hhhcCCCCCCEEeccCCCCC
Q 012694 297 HFNELHGL--PRA-----IGKLTRLEVLNLSSNFNDLTELP--ETIGDLINLRELDLSNNQIR 350 (458)
Q Consensus 297 ~~n~l~~l--~~~-----l~~l~~L~~L~L~~n~~~~~~l~--~~l~~l~~L~~L~L~~n~l~ 350 (458)
+.|.++++ |+. ...+++|++|++..| .+.+++ ..+..+++|+.|.+..|.++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N--~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISEN--NIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccC--ccccccccchhhccchhhhhhccccccc
Confidence 77777663 322 244566666666666 333332 23444556666666666555
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.36 E-value=4.9e-13 Score=116.96 Aligned_cols=122 Identities=28% Similarity=0.391 Sum_probs=32.1
Q ss_pred ccceeeeecCCCCCCchhhc-CCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC
Q 012694 197 KLEELDVSSNLLQSLPDSIG-LLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL 275 (458)
Q Consensus 197 ~L~~L~L~~n~l~~l~~~l~-~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~ 275 (458)
++++|+|++|.|+.+. .++ .+.+|+.|++++|.++.+ +++..++.|++|++++|.++.+..++...+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 4444444444444442 232 244444444444444444 2344444555555555555444433322345555555555
Q ss_pred CcCccCC--ccccCCCCCcEEEcccCCCCCcc----ccccCCCcccEEEcc
Q 012694 276 NKLRTFP--PSICEMRSLKYLDAHFNELHGLP----RAIGKLTRLEVLNLS 320 (458)
Q Consensus 276 n~l~~l~--~~l~~l~~L~~L~l~~n~l~~l~----~~l~~l~~L~~L~L~ 320 (458)
|+|..+. ..+..+++|+.|++.+|.++.-+ ..+..+|+|+.||-.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5544321 23445556666666666555432 134455555555543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.4e-13 Score=130.12 Aligned_cols=213 Identities=26% Similarity=0.253 Sum_probs=146.9
Q ss_pred CccchhhCCCCCCcEEEcccCCCCccc--hhhcCCcccceeeeecCCCCCC---chhhcCCCCccEEEeeCCCCCCCchh
Q 012694 163 KLLPEAFGRLRGLVSLNLSRNLLEAMP--DSIAGLQKLEELDVSSNLLQSL---PDSIGLLLNLKVLNVSGNKLNTLPES 237 (458)
Q Consensus 163 ~~l~~~~~~l~~L~~L~l~~n~i~~l~--~~l~~l~~L~~L~L~~n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~ 237 (458)
.++..-=+++.+|+...|.++.+...+ .....|++++.|||+.|-+... ..-...+++|+.|+++.|++...-.+
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 344444456778888888888887665 3567888888899888877643 23456788888888888887633221
Q ss_pred --hcCCCCCcEEEcCCCCCCcCC-chhhccCCCCCEEeccCCc-CccCCccccCCCCCcEEEcccCCCCCcc--ccccCC
Q 012694 238 --IARCSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNK-LRTFPPSICEMRSLKYLDAHFNELHGLP--RAIGKL 311 (458)
Q Consensus 238 --l~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l 311 (458)
-..++.|+.|.++.|.++.-. ..+...+|+|+.|++..|. +.........+..|+.|+|++|++.+.+ ...+.+
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 124678888888888887322 1223368888888888884 3322223344667888888888888765 567788
Q ss_pred CcccEEEccCCCCCCCccchh-----hcCCCCCCEEeccCCCCCCCc--hhhhCCCCCcEEECcCCCCCCC
Q 012694 312 TRLEVLNLSSNFNDLTELPET-----IGDLINLRELDLSNNQIRALP--DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 312 ~~L~~L~L~~n~~~~~~l~~~-----l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
+.|+.|+++.|.+....+|+. ...+++|+.|++..|+|.+.+ ..+..+++|+.|.+..|++...
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 888888888873332333433 345788888999888887664 3566678888888888877654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.34 E-value=1e-12 Score=115.02 Aligned_cols=103 Identities=28% Similarity=0.431 Sum_probs=24.0
Q ss_pred ceeEEEecCCCCCccchhhC-CCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhh-cCCCCccEEEeeC
Q 012694 151 VVETVDLADRQLKLLPEAFG-RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSG 228 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l-~~l~~L~~L~l~~ 228 (458)
.++.|+|.+|.|+.+. .++ .+.+|+.|++++|.|+.+. .+..+++|++|++++|.|+++...+ ..+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 3455555555555442 232 3445555555555555552 3445555555555555555553333 2345555555555
Q ss_pred CCCCCCc--hhhcCCCCCcEEEcCCCCCC
Q 012694 229 NKLNTLP--ESIARCSSLVELDASFNNLV 255 (458)
Q Consensus 229 n~l~~l~--~~l~~l~~L~~L~l~~n~l~ 255 (458)
|+|..+. ..+..+++|+.|++.+|.++
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5544331 23334444444444444444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.33 E-value=2.2e-13 Score=124.42 Aligned_cols=226 Identities=25% Similarity=0.292 Sum_probs=163.5
Q ss_pred hHHHHHHhccCCCceeEEEecCCC-------CC--ccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCC
Q 012694 138 DVVKILQEAESGVVVETVDLADRQ-------LK--LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLL 208 (458)
Q Consensus 138 ~~~~~l~~~~~~~~L~~L~l~~~~-------l~--~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l 208 (458)
+...++... ..|..|-.++.. |. .+|..+.-+.+|+.+.++.|.-..|-+....-+.|+++.+.+..+
T Consensus 173 d~~hildf~---~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~ 249 (490)
T KOG1259|consen 173 DFSHVLDFC---TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTI 249 (490)
T ss_pred chHHHHHhh---hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccc
Confidence 444555443 456666666542 11 344456667788888888886555433233346677777776654
Q ss_pred CCC----c--------------------hhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhcc
Q 012694 209 QSL----P--------------------DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYG 264 (458)
Q Consensus 209 ~~l----~--------------------~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~ 264 (458)
... | ..+...+.|+.+|+++|.|+.+.+++.-.+.++.|+++.|.+..+.. ...
T Consensus 250 ~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~ 327 (490)
T KOG1259|consen 250 QDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAE 327 (490)
T ss_pred cccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhh
Confidence 421 1 11234578999999999999998888889999999999999998876 336
Q ss_pred CCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccc--hhhcCCCCCCEE
Q 012694 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP--ETIGDLINLREL 342 (458)
Q Consensus 265 l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~--~~l~~l~~L~~L 342 (458)
+++|+.|++++|.++.+..+-..+.++++|.+++|.|.++. .++++-+|..||+++| .+..+. ..++.++.|+.+
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N--~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSN--QIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheecccccc--chhhHHHhcccccccHHHHH
Confidence 99999999999999988666667889999999999999884 4888889999999998 444442 457899999999
Q ss_pred eccCCCCCCCch----hhhCC-CCCcEEECcCCC
Q 012694 343 DLSNNQIRALPD----TFFRL-ENLTKLNLDQNP 371 (458)
Q Consensus 343 ~L~~n~l~~l~~----~l~~l-~~L~~L~L~~n~ 371 (458)
.|.+|.|..+++ .+..+ ..=.++.|++-+
T Consensus 405 ~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~ 438 (490)
T KOG1259|consen 405 RLTGNPLAGSVDYRTKVLARFGERASEISLDNEP 438 (490)
T ss_pred hhcCCCccccchHHHHHHHHHhhhhhheecCCCC
Confidence 999999997763 22221 233456666543
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.31 E-value=1.4e-13 Score=139.03 Aligned_cols=226 Identities=28% Similarity=0.351 Sum_probs=154.6
Q ss_pred HHhccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCcc
Q 012694 143 LQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLK 222 (458)
Q Consensus 143 l~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~ 222 (458)
...+...++++.|++.+|.|..+...+..+.+|++|++++|.|+.+. .+..+..|+.|++++|.|+.+. .+..++.|+
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLK 165 (414)
T ss_pred hcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhh
Confidence 33355667788888888888877654677788888888888888773 4667777888888888887773 355577888
Q ss_pred EEEeeCCCCCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCC--CcEEEcccC
Q 012694 223 VLNVSGNKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRS--LKYLDAHFN 299 (458)
Q Consensus 223 ~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~--L~~L~l~~n 299 (458)
.+++++|++..+... ...+.+++.+++.+|.+..+.... .+..+..+++..|.++.+ ..+..+.. |+.+++++|
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~--~~~~l~~~~l~~n~i~~~-~~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLD--LLKKLVLLSLLDNKISKL-EGLNELVMLHLRELYLSGN 242 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchH--HHHHHHHhhcccccceec-cCcccchhHHHHHHhcccC
Confidence 888888887766443 466777888888888777655322 233444457777777655 33334443 788888888
Q ss_pred CCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC---CCch--hhhCCCCCcEEECcCCCCCC
Q 012694 300 ELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR---ALPD--TFFRLENLTKLNLDQNPLVI 374 (458)
Q Consensus 300 ~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~---~l~~--~l~~l~~L~~L~L~~n~i~~ 374 (458)
.+..++..+..+.++..|++.+| .+..+ ..+.....+..+....|.+. .... .....+.+..+.+.+|++..
T Consensus 243 ~i~~~~~~~~~~~~l~~l~~~~n--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 243 RISRSPEGLENLKNLPVLDLSSN--RISNL-EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccccccccchhhc--ccccc-ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 88877666777888888888876 33343 23445566677777777665 2111 25567788888888888876
Q ss_pred Cc
Q 012694 375 PP 376 (458)
Q Consensus 375 ~~ 376 (458)
..
T Consensus 320 ~~ 321 (414)
T KOG0531|consen 320 IS 321 (414)
T ss_pred cc
Confidence 43
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=1.6e-12 Score=121.39 Aligned_cols=218 Identities=22% Similarity=0.264 Sum_probs=163.7
Q ss_pred hhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCC----CCc-------hhhcCCCCccEEEeeCCC
Q 012694 167 EAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQ----SLP-------DSIGLLLNLKVLNVSGNK 230 (458)
Q Consensus 167 ~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~----~l~-------~~l~~l~~L~~L~l~~n~ 230 (458)
+.+.....++.+++++|.++ .+...+.+.++|+.-++++--.. .+| .++..+++|++|+||+|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 35566789999999999998 45667888889999998865322 334 345567899999999998
Q ss_pred CCC-----CchhhcCCCCCcEEEcCCCCCCcCCchh-------------hccCCCCCEEeccCCcCccC-----CccccC
Q 012694 231 LNT-----LPESIARCSSLVELDASFNNLVCLPTNI-------------GYGLLNLERLSIKLNKLRTF-----PPSICE 287 (458)
Q Consensus 231 l~~-----l~~~l~~l~~L~~L~l~~n~l~~l~~~~-------------~~~l~~L~~L~L~~n~l~~l-----~~~l~~ 287 (458)
+.. +..-+..++.|++|.+.+|.+....... ...-++|+.+..++|++... ...+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 872 2244677999999999999987433222 12457899999999998744 345677
Q ss_pred CCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCC---CccchhhcCCCCCCEEeccCCCCCC-----Cch
Q 012694 288 MRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDL---TELPETIGDLINLRELDLSNNQIRA-----LPD 354 (458)
Q Consensus 288 l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~---~~l~~~l~~l~~L~~L~L~~n~l~~-----l~~ 354 (458)
.+.|+.+.+..|.|.. +...+..+++|++|||..|.... ..+...+..+++|++|++++|.++. +..
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 7899999999998866 34578899999999999994322 2344567788999999999999882 223
Q ss_pred hhh-CCCCCcEEECcCCCCCCCcHHHHhhcH
Q 012694 355 TFF-RLENLTKLNLDQNPLVIPPMEIVNKGV 384 (458)
Q Consensus 355 ~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~ 384 (458)
.+. ..|+|+.|.+.+|.|+.....++..+.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~ 294 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACM 294 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHH
Confidence 333 379999999999999876655544433
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.19 E-value=3.9e-12 Score=128.49 Aligned_cols=217 Identities=29% Similarity=0.423 Sum_probs=174.9
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
..++.+.+..|.+..+-..+..+.+|..|++.+|.|..+...+..+.+|++|++++|.|+++ ..+..++.|+.|++.+|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN 150 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC
Confidence 44666668888887755567889999999999999999865588999999999999999998 45778888999999999
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG 309 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~ 309 (458)
.++.+ ..+..++.|+.+++++|.+..+.......+.+++.+.+.+|.+..+ ..+..+..+..+++..|.++.+.. +.
T Consensus 151 ~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~-l~ 227 (414)
T KOG0531|consen 151 LISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG-LN 227 (414)
T ss_pred cchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC-cc
Confidence 99987 4566699999999999999988762023789999999999999877 455566667777899998888633 33
Q ss_pred CCCc--ccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCC
Q 012694 310 KLTR--LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLV 373 (458)
Q Consensus 310 ~l~~--L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~ 373 (458)
.+.. |+.+++++| .+..++..+..+.++..|++.+|++..+ ..+...+.+..+....|++.
T Consensus 228 ~~~~~~L~~l~l~~n--~i~~~~~~~~~~~~l~~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 228 ELVMLHLRELYLSGN--RISRSPEGLENLKNLPVLDLSSNRISNL-EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cchhHHHHHHhcccC--ccccccccccccccccccchhhcccccc-ccccccchHHHhccCcchhc
Confidence 3343 899999998 5566656678889999999999999876 34556677777777777766
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=2.2e-10 Score=124.01 Aligned_cols=129 Identities=26% Similarity=0.314 Sum_probs=100.1
Q ss_pred CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCC--CCccch-hhcCCcccceeeeecCC-CCCCchhhcCCCCccE
Q 012694 148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNL--LEAMPD-SIAGLQKLEELDVSSNL-LQSLPDSIGLLLNLKV 223 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~--i~~l~~-~l~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~ 223 (458)
....++++.+.++.+..++... .++.|++|-+.+|. +..++. .|..++.|++||+++|. +..+|..++.+-+|++
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 4466788888888887776543 34578888888885 556653 47888999999999775 7788888888999999
Q ss_pred EEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCc
Q 012694 224 LNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNK 277 (458)
Q Consensus 224 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 277 (458)
|+++++.++.+|.++.+++.|.+|++..+.-.....++...+++|++|.+....
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999888899899999999999988876444445565568888888886554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.91 E-value=9.4e-10 Score=119.16 Aligned_cols=227 Identities=26% Similarity=0.247 Sum_probs=124.5
Q ss_pred CCCceeEEEecCCC--CCccch-hhCCCCCCcEEEcccC-CCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccE
Q 012694 148 SGVVVETVDLADRQ--LKLLPE-AFGRLRGLVSLNLSRN-LLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKV 223 (458)
Q Consensus 148 ~~~~L~~L~l~~~~--l~~l~~-~~~~l~~L~~L~l~~n-~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~ 223 (458)
.++++++|-+.+|. +..++. .|..++.|++|++++| .++.+|..++.+-+|++|+++++.|+.+|.+++++..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 44567777777775 444443 4666777777777766 5667777777777777777777777777777777777777
Q ss_pred EEeeCCC-CCCCchhhcCCCCCcEEEcCCCCC--CcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCc----EEEc
Q 012694 224 LNVSGNK-LNTLPESIARCSSLVELDASFNNL--VCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLK----YLDA 296 (458)
Q Consensus 224 L~l~~n~-l~~l~~~l~~l~~L~~L~l~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~----~L~l 296 (458)
|++..+. +..+|.....+++|++|.+..... +........++.+|+.+....... .+...+..++.|. .+.+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhh
Confidence 7777663 334444455577777777655431 111111112444444444433322 1112223333332 2333
Q ss_pred ccCCCCCccccccCCCcccEEEccCCCCCCCccc-hhhc-----C-CCCCCEEeccCCCCCCCchhhhCCCCCcEEECcC
Q 012694 297 HFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP-ETIG-----D-LINLRELDLSNNQIRALPDTFFRLENLTKLNLDQ 369 (458)
Q Consensus 297 ~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~-----~-l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~ 369 (458)
.++.....+..+..+.+|+.|.+.++ .+.+.. .+.. . ++++..+...++..-..+.+.--.++|+.|.+..
T Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~i~~~--~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 702 EGCSKRTLISSLGSLGNLEELSILDC--GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred cccccceeecccccccCcceEEEEcC--CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEec
Confidence 33444445555667777777777776 222111 1111 1 2233333333432222233444457888888887
Q ss_pred CCCCCCcH
Q 012694 370 NPLVIPPM 377 (458)
Q Consensus 370 n~i~~~~~ 377 (458)
+.....++
T Consensus 780 ~~~~e~~i 787 (889)
T KOG4658|consen 780 CRLLEDII 787 (889)
T ss_pred ccccccCC
Confidence 77665544
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.88 E-value=1.9e-11 Score=123.68 Aligned_cols=130 Identities=32% Similarity=0.435 Sum_probs=92.9
Q ss_pred CCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCC
Q 012694 243 SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN 322 (458)
Q Consensus 243 ~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n 322 (458)
.|...++++|.+..++...- -++.|+.|+|+.|+++... .+..++.|++||+++|.++.+|..-..-.+|..|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLq-ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQ-LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHH-HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 45566667777666655443 4677777777777777663 677788888888888888887752222234888888887
Q ss_pred CCCCCccchhhcCCCCCCEEeccCCCCCCCc--hhhhCCCCCcEEECcCCCCCCCcH
Q 012694 323 FNDLTELPETIGDLINLRELDLSNNQIRALP--DTFFRLENLTKLNLDQNPLVIPPM 377 (458)
Q Consensus 323 ~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~n~i~~~~~ 377 (458)
.++.+ ..+.++.+|+.||+++|-|.... ..+..+..|+.|+|.||++.+.|.
T Consensus 243 --~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 243 --ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred --HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 55555 45677888889999999777442 356667888999999999887664
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.87 E-value=7.1e-11 Score=119.64 Aligned_cols=123 Identities=33% Similarity=0.384 Sum_probs=103.1
Q ss_pred ccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCC
Q 012694 197 KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN 276 (458)
Q Consensus 197 ~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n 276 (458)
.|.+.++++|.+..+..++.-++.|+.|+|++|+++... .+..|++|++||+++|.+..+|.-...++. |..|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 577788888888888778888899999999999999874 788899999999999999988865444444 999999999
Q ss_pred cCccCCccccCCCCCcEEEcccCCCCCcc--ccccCCCcccEEEccCC
Q 012694 277 KLRTFPPSICEMRSLKYLDAHFNELHGLP--RAIGKLTRLEVLNLSSN 322 (458)
Q Consensus 277 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~L~~n 322 (458)
.++++ ..+.++++|+.||+++|-|.+-. ..+..+..|+.|+|.+|
T Consensus 243 ~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 243 ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99988 57888999999999999887732 24667788999999998
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=2.6e-09 Score=98.01 Aligned_cols=223 Identities=21% Similarity=0.161 Sum_probs=149.4
Q ss_pred CceeEEEecCCCCCccch--hh-CCCCCCcEEEcccCCCCc---cchhhcCCcccceeeeecCCCCCCchhh-cCCCCcc
Q 012694 150 VVVETVDLADRQLKLLPE--AF-GRLRGLVSLNLSRNLLEA---MPDSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLK 222 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~--~~-~~l~~L~~L~l~~n~i~~---l~~~l~~l~~L~~L~L~~n~l~~l~~~l-~~l~~L~ 222 (458)
..++.|.+.++.|....+ .| ..+..++.++|.+|.|+. +...+.+++.|++|+++.|.+...-..+ ..+.+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345567777777764332 22 346789999999999984 4455789999999999999877432333 3567899
Q ss_pred EEEeeCCCCC--CCchhhcCCCCCcEEEcCCCCCCcCC--chhhc-cCCCCCEEeccCCcCc---cCCccccCCCCCcEE
Q 012694 223 VLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLP--TNIGY-GLLNLERLSIKLNKLR---TFPPSICEMRSLKYL 294 (458)
Q Consensus 223 ~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~--~~~~~-~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L 294 (458)
+|.|.+..+. .....+..++.+++|.++.|++..+. ..... .-+.+++|+...|... .+..--..++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 9999998765 45556777889999999998655322 21111 2235666766666443 121122345788888
Q ss_pred EcccCCCCCcc--ccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCC-C----c--hhhhCCCCCcEE
Q 012694 295 DAHFNELHGLP--RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA-L----P--DTFFRLENLTKL 365 (458)
Q Consensus 295 ~l~~n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~-l----~--~~l~~l~~L~~L 365 (458)
-+..|.+.+.. .....++.+..|+|+.|.++.-.-.+.+.++++|..|.+++|.+.+ + + -.++.+++++.|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 88888887743 4566778888899998733322223567889999999999997762 1 1 135678888887
Q ss_pred ECcCCCCCC
Q 012694 366 NLDQNPLVI 374 (458)
Q Consensus 366 ~L~~n~i~~ 374 (458)
+=+ +|..
T Consensus 285 NGs--kIss 291 (418)
T KOG2982|consen 285 NGS--KISS 291 (418)
T ss_pred cCc--ccch
Confidence 644 5553
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.78 E-value=3.2e-09 Score=96.25 Aligned_cols=239 Identities=22% Similarity=0.192 Sum_probs=159.8
Q ss_pred hhHHHHHHhccCCCceeEEEecCCCCC-----ccchhhCCCCCCcEEEcccCCCC----cc-------chhhcCCcccce
Q 012694 137 EDVVKILQEAESGVVVETVDLADRQLK-----LLPEAFGRLRGLVSLNLSRNLLE----AM-------PDSIAGLQKLEE 200 (458)
Q Consensus 137 ~~~~~~l~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i~----~l-------~~~l~~l~~L~~ 200 (458)
+++...+..+..+..+..++|+||.|. .+...+..-.+|+..+++.-..+ .+ .+++-+|++|+.
T Consensus 17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 344445555556788999999999987 44456667788999888875433 22 246678999999
Q ss_pred eeeecCCCCC-C----chhhcCCCCccEEEeeCCCCCCCc-----hh---------hcCCCCCcEEEcCCCCCCcCCch-
Q 012694 201 LDVSSNLLQS-L----PDSIGLLLNLKVLNVSGNKLNTLP-----ES---------IARCSSLVELDASFNNLVCLPTN- 260 (458)
Q Consensus 201 L~L~~n~l~~-l----~~~l~~l~~L~~L~l~~n~l~~l~-----~~---------l~~l~~L~~L~l~~n~l~~l~~~- 260 (458)
.+||.|.+.. . .+.+++-+.|++|.+++|.+..+. .+ ..+-+.|+...+..|++...+..
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 9999998762 2 345677889999999999887442 11 23457888999999988755432
Q ss_pred ---hhccCCCCCEEeccCCcCcc--C----CccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCC
Q 012694 261 ---IGYGLLNLERLSIKLNKLRT--F----PPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDL 326 (458)
Q Consensus 261 ---~~~~l~~L~~L~L~~n~l~~--l----~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~ 326 (458)
.+..-.+|+.+.+..|.|.. + ...+..+.+|+.||+..|.++. +...+..++.|+.|.+..|...-
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 22122578888888888861 1 1245567788888888888776 33456677778888888873332
Q ss_pred Cccchhh-----cCCCCCCEEeccCCCCC--C-----Cchh-hhCCCCCcEEECcCCCCCCC
Q 012694 327 TELPETI-----GDLINLRELDLSNNQIR--A-----LPDT-FFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 327 ~~l~~~l-----~~l~~L~~L~L~~n~l~--~-----l~~~-l~~l~~L~~L~L~~n~i~~~ 375 (458)
......+ ...++|..|-..+|.+. . ++.. =..+|-|..|.+.||.|...
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 2222222 23567788888887544 1 1111 12467777777788877654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.3e-09 Score=99.98 Aligned_cols=172 Identities=20% Similarity=0.190 Sum_probs=84.5
Q ss_pred cceeeeecCCCC--CCchhhcCCCCccEEEeeCCCCC-CCchhhcCCCCCcEEEcCCCC-CCcCC-chhhccCCCCCEEe
Q 012694 198 LEELDVSSNLLQ--SLPDSIGLLLNLKVLNVSGNKLN-TLPESIARCSSLVELDASFNN-LVCLP-TNIGYGLLNLERLS 272 (458)
Q Consensus 198 L~~L~L~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~-l~~l~-~~~~~~l~~L~~L~ 272 (458)
|++|||++..|+ .+..-+..+.+|+.|.+.++++. .+...+.+..+|+.|+++.++ ++... .-++..++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 555555555544 22233444555555555555554 233344445555555555442 33222 12334555566666
Q ss_pred ccCCcCcc--CCcccc-CCCCCcEEEcccCC----CCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEecc
Q 012694 273 IKLNKLRT--FPPSIC-EMRSLKYLDAHFNE----LHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLS 345 (458)
Q Consensus 273 L~~n~l~~--l~~~l~-~l~~L~~L~l~~n~----l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~ 345 (458)
++.|.+.. +...+. --++|..|+++++. ...+......+++|.+|||++|..--......+..++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 66554431 100111 12356666666552 122333345667777777777622111222345566777777777
Q ss_pred CCCCCCCc---hhhhCCCCCcEEECcCC
Q 012694 346 NNQIRALP---DTFFRLENLTKLNLDQN 370 (458)
Q Consensus 346 ~n~l~~l~---~~l~~l~~L~~L~L~~n 370 (458)
.|..- +| -.+...|.|.+|++.++
T Consensus 347 RCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 77322 12 23456677777777765
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.7e-08 Score=72.66 Aligned_cols=57 Identities=47% Similarity=0.679 Sum_probs=27.8
Q ss_pred CCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeCCC
Q 012694 174 GLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNK 230 (458)
Q Consensus 174 ~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~ 230 (458)
+|++|++++|+++.+| ..|.++++|++|++++|.++.++ ..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4445555555555444 23445555555555555555442 244455555555555543
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=7.6e-08 Score=101.99 Aligned_cols=103 Identities=30% Similarity=0.498 Sum_probs=69.4
Q ss_pred CcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEEEeeCCCCC-CCchhhcCCCCCcEEEcCC
Q 012694 175 LVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLNVSGNKLN-TLPESIARCSSLVELDASF 251 (458)
Q Consensus 175 L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~ 251 (458)
++.|+|++|.++ .+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|++++|+++ .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777665 55666777777777777777765 55666777777777777777776 5666777777777777777
Q ss_pred CCCC-cCCchhhccCCCCCEEeccCCc
Q 012694 252 NNLV-CLPTNIGYGLLNLERLSIKLNK 277 (458)
Q Consensus 252 n~l~-~l~~~~~~~l~~L~~L~L~~n~ 277 (458)
|.++ .+|..+.....++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 7766 4555444333456667776663
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=2.3e-08 Score=71.91 Aligned_cols=36 Identities=36% Similarity=0.386 Sum_probs=13.5
Q ss_pred CCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCC
Q 012694 241 CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN 276 (458)
Q Consensus 241 l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n 276 (458)
+++|++|++++|.++.++...+.++++|++|++++|
T Consensus 24 l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 24 LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp GTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333333333333333333333333333333333333
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=1e-07 Score=100.99 Aligned_cols=106 Identities=29% Similarity=0.486 Sum_probs=83.2
Q ss_pred CCEEeccCCcCc-cCCccccCCCCCcEEEcccCCCCC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEecc
Q 012694 268 LERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLS 345 (458)
Q Consensus 268 L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~ 345 (458)
++.|+|++|.+. .+|..+..+++|+.|++++|.+.+ +|..++.+++|+.|+|++|. -.+.+|+.++.+++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-CCCCCchHHhcCCCCCEEECc
Confidence 677888888887 677788888888888888888875 77778888888888888883 224678888888888888888
Q ss_pred CCCCC-CCchhhhCC-CCCcEEECcCCCCCC
Q 012694 346 NNQIR-ALPDTFFRL-ENLTKLNLDQNPLVI 374 (458)
Q Consensus 346 ~n~l~-~l~~~l~~l-~~L~~L~L~~n~i~~ 374 (458)
+|+++ .+|..++.. .++..+++.+|+..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 88887 667776653 466788888876543
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.57 E-value=5.5e-09 Score=85.36 Aligned_cols=113 Identities=22% Similarity=0.309 Sum_probs=82.1
Q ss_pred CceeEEEecCCCCCccch---hhCCCCCCcEEEcccCCCCccchhhc-CCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694 150 VVVETVDLADRQLKLLPE---AFGRLRGLVSLNLSRNLLEAMPDSIA-GLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN 225 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~---~~~~l~~L~~L~l~~n~i~~l~~~l~-~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 225 (458)
..+-.++|+.|.+-.+++ .+.+...|+..++++|.+..+|+.|. ..+.+++|++++|.|+++|..+..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 445567777776665544 45555667777888888877776654 34577888888888888887788888888888
Q ss_pred eeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhh
Q 012694 226 VSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIG 262 (458)
Q Consensus 226 l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~ 262 (458)
++.|.+...|..+..+.+|-.|+..+|.+..++...+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence 8888888777777777777788888777777765543
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.56 E-value=6.4e-08 Score=79.21 Aligned_cols=99 Identities=22% Similarity=0.387 Sum_probs=86.3
Q ss_pred HHHHHhccCCCceeEEEecCCCCCccchhhCC-CCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCC
Q 012694 140 VKILQEAESGVVVETVDLADRQLKLLPEAFGR-LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLL 218 (458)
Q Consensus 140 ~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~-l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l 218 (458)
.+....+.....|+..++++|.+..+|+.|.. ++.++.|++.+|.|..+|..+..++.|+.|+++.|.+...|..+..+
T Consensus 43 ~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L 122 (177)
T KOG4579|consen 43 ADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPL 122 (177)
T ss_pred HHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHH
Confidence 33444455667899999999999999986665 46899999999999999999999999999999999999999888889
Q ss_pred CCccEEEeeCCCCCCCchhh
Q 012694 219 LNLKVLNVSGNKLNTLPESI 238 (458)
Q Consensus 219 ~~L~~L~l~~n~l~~l~~~l 238 (458)
.+|-.|+..+|.+..++.++
T Consensus 123 ~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 123 IKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred HhHHHhcCCCCccccCcHHH
Confidence 99999999999988887654
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.4e-09 Score=97.31 Aligned_cols=215 Identities=20% Similarity=0.171 Sum_probs=146.5
Q ss_pred CceeEEEecCCCCC--ccchhhCCC-CCCcEEEcccCCCC--ccchhhcCCcccceeeeecCCCCC-CchhhcCCCCccE
Q 012694 150 VVVETVDLADRQLK--LLPEAFGRL-RGLVSLNLSRNLLE--AMPDSIAGLQKLEELDVSSNLLQS-LPDSIGLLLNLKV 223 (458)
Q Consensus 150 ~~L~~L~l~~~~l~--~l~~~~~~l-~~L~~L~l~~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~ 223 (458)
..+..+.+....+. .+.+.+.-+ ..|++|+|++..|+ .+...+..|.+|+.|.+.++++.+ +...+..-.+|+.
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 45777777655443 233333322 46999999999888 444567889999999999999884 5667888899999
Q ss_pred EEeeCC-CCCCC--chhhcCCCCCcEEEcCCCCCCc--CCchhhccCCCCCEEeccCCcCc----cCCccccCCCCCcEE
Q 012694 224 LNVSGN-KLNTL--PESIARCSSLVELDASFNNLVC--LPTNIGYGLLNLERLSIKLNKLR----TFPPSICEMRSLKYL 294 (458)
Q Consensus 224 L~l~~n-~l~~l--~~~l~~l~~L~~L~l~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~----~l~~~l~~l~~L~~L 294 (458)
|+++.+ .+++. .--+.+|+.|.+|+++-|.+.. +...+..--++|+.|+++++.-. .+..-...+++|..|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 999987 67743 3457789999999999987652 22222323467899999887422 232234678999999
Q ss_pred EcccCCC-CC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcE
Q 012694 295 DAHFNEL-HG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTK 364 (458)
Q Consensus 295 ~l~~n~l-~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~ 364 (458)
||++|.. +. +-..+.+++.|++|.++.|+.-..+.--.+...+.|.+|++.++-=. ...-....+++|+.
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 9998854 33 33457789999999999983222221123577899999999887321 22112334566553
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=4.6e-08 Score=89.98 Aligned_cols=205 Identities=20% Similarity=0.196 Sum_probs=140.4
Q ss_pred CCCCCcEEEcccCCCCccchh--h-cCCcccceeeeecCCCCCC---chhhcCCCCccEEEeeCCCCCCCchhh-cCCCC
Q 012694 171 RLRGLVSLNLSRNLLEAMPDS--I-AGLQKLEELDVSSNLLQSL---PDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSS 243 (458)
Q Consensus 171 ~l~~L~~L~l~~n~i~~l~~~--l-~~l~~L~~L~L~~n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~l-~~l~~ 243 (458)
....+..|.+.++.|....+. | ..+..+++|||.+|.|++. ...+.++|.|++|+++.|.+..--..+ ....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 334566777888888765432 3 3568899999999999854 445688999999999999887432333 34678
Q ss_pred CcEEEcCCCCCCcCC-chhhccCCCCCEEeccCCcCccCC---ccccC-CCCCcEEEcccCCCCC---ccccccCCCccc
Q 012694 244 LVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNKLRTFP---PSICE-MRSLKYLDAHFNELHG---LPRAIGKLTRLE 315 (458)
Q Consensus 244 L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~---~~l~~-l~~L~~L~l~~n~l~~---l~~~l~~l~~L~ 315 (458)
|+.|-+.++.+..-. ......+|.++.|+++.|.+..+- +.... -+.+++|....|.... +-..-.-++++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 999999988766222 233347888899999988666331 11111 2355666666654322 112223467888
Q ss_pred EEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc--hhhhCCCCCcEEECcCCCCCCC
Q 012694 316 VLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP--DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 316 ~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
.+.+..|......-.+....++.+-.|+|+.|+|.+.. +.+.+++.|..|.+.+||+.+.
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 88888874333333344566778889999999999663 6889999999999999998754
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.42 E-value=1.5e-07 Score=85.54 Aligned_cols=208 Identities=23% Similarity=0.215 Sum_probs=146.1
Q ss_pred hhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCC----CCc-------hhhcCCCCccEEEeeCCC
Q 012694 167 EAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQ----SLP-------DSIGLLLNLKVLNVSGNK 230 (458)
Q Consensus 167 ~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~----~l~-------~~l~~l~~L~~L~l~~n~ 230 (458)
..+..+..++.++|++|.|+ .+...+.+-.+|++.+++.-... .++ .++-+|++|++.+|++|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34455788999999999998 34556777788999888865433 222 346789999999999998
Q ss_pred CC-CCc----hhhcCCCCCcEEEcCCCCCCcCCchhh-------------ccCCCCCEEeccCCcCccCCcc-----ccC
Q 012694 231 LN-TLP----ESIARCSSLVELDASFNNLVCLPTNIG-------------YGLLNLERLSIKLNKLRTFPPS-----ICE 287 (458)
Q Consensus 231 l~-~l~----~~l~~l~~L~~L~l~~n~l~~l~~~~~-------------~~l~~L~~L~L~~n~l~~l~~~-----l~~ 287 (458)
+. ..| +-++.-+.|++|.+++|.+..+..+-. ..-|.|+...+..|++...+.. +..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 87 333 356778899999999998875442211 1456799999999988866532 233
Q ss_pred CCCCcEEEcccCCCCC--c----cccccCCCcccEEEccCCCCCC---CccchhhcCCCCCCEEeccCCCCCCC--ch--
Q 012694 288 MRSLKYLDAHFNELHG--L----PRAIGKLTRLEVLNLSSNFNDL---TELPETIGDLINLRELDLSNNQIRAL--PD-- 354 (458)
Q Consensus 288 l~~L~~L~l~~n~l~~--l----~~~l~~l~~L~~L~L~~n~~~~---~~l~~~l~~l~~L~~L~L~~n~l~~l--~~-- 354 (458)
-.+|+.+.+..|.|.. + -..+..+.+|++|+|..|.... ..+...+...+.|+.|.+.+|-++.- ..
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence 3578999999998865 1 2345567899999999983321 12333455567789999999977722 12
Q ss_pred -hhh--CCCCCcEEECcCCCCCC
Q 012694 355 -TFF--RLENLTKLNLDQNPLVI 374 (458)
Q Consensus 355 -~l~--~l~~L~~L~L~~n~i~~ 374 (458)
.+. ..|+|..|...+|-+..
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHhhhhcCCCccccccchhhhcC
Confidence 222 25888999999887654
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.40 E-value=4.3e-07 Score=79.29 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=70.3
Q ss_pred CccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC--ccccCCCCCcEEEcc
Q 012694 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLDAH 297 (458)
Q Consensus 220 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~l~ 297 (458)
+...+|+++|.+..+ ..+..++.|.+|.+++|+|+.+...+...+++|..|.+.+|+|..+. ..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 455566666655544 34555666777777777777776666666777777777777777553 356778888888888
Q ss_pred cCCCCCcc----ccccCCCcccEEEccC
Q 012694 298 FNELHGLP----RAIGKLTRLEVLNLSS 321 (458)
Q Consensus 298 ~n~l~~l~----~~l~~l~~L~~L~L~~ 321 (458)
+|.++.-. ..+..+++|+.||...
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 88887743 2467788888888876
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.38 E-value=8e-07 Score=87.33 Aligned_cols=135 Identities=23% Similarity=0.208 Sum_probs=90.3
Q ss_pred hCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecC-CCCCCchhhcCCCCccEEEeeCC-CCCCCchhhcCCCCCcE
Q 012694 169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSN-LLQSLPDSIGLLLNLKVLNVSGN-KLNTLPESIARCSSLVE 246 (458)
Q Consensus 169 ~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~ 246 (458)
+..+.+++.|++++|.++.+|. + -.+|++|.+++| .++.+|..+ .++|++|++++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 4456889999999999998872 2 246999999875 477777655 358999999998 7776664 5777
Q ss_pred EEcCCCCCCcCCchhhccCCCCCEEeccCCc-C--ccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCC
Q 012694 247 LDASFNNLVCLPTNIGYGLLNLERLSIKLNK-L--RTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN 322 (458)
Q Consensus 247 L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l--~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n 322 (458)
|++..+.+..+.. -.++|+.|.+.++. . ..++.. -.++|++|++++|....+|..+. .+|+.|+++.|
T Consensus 117 L~L~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKN----VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCccccc----CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 7777765443321 12356777775432 1 112211 12578889998888766665433 57888888765
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=2.9e-06 Score=83.47 Aligned_cols=135 Identities=21% Similarity=0.325 Sum_probs=95.0
Q ss_pred ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccC-CCCccchhhcCCcccceeeeecC-CCCCCchhhcCCCCccE
Q 012694 146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRN-LLEAMPDSIAGLQKLEELDVSSN-LLQSLPDSIGLLLNLKV 223 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n-~i~~l~~~l~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~ 223 (458)
+..+..++.|++++|.++.+|. + -.+|+.|.+++| .++.+|..+. .+|++|++++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 3345789999999999999982 2 247999999985 6777776553 68999999998 6777765 4777
Q ss_pred EEeeCCCCC---CCchhhcCCCCCcEEEcCCCC-C--CcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcc
Q 012694 224 LNVSGNKLN---TLPESIARCSSLVELDASFNN-L--VCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH 297 (458)
Q Consensus 224 L~l~~n~l~---~l~~~l~~l~~L~~L~l~~n~-l--~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~ 297 (458)
|++.++... .+|. +|+.|.+.+++ . ..++. . -.++|+.|++++|....+|..+. .+|+.|.++
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN-L--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLH 185 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheecccccccccccccc-c--cCCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence 888776543 4444 56677775432 1 11221 1 13679999999998777665554 589999998
Q ss_pred cCCCC
Q 012694 298 FNELH 302 (458)
Q Consensus 298 ~n~l~ 302 (458)
.+...
T Consensus 186 ~n~~~ 190 (426)
T PRK15386 186 IEQKT 190 (426)
T ss_pred ccccc
Confidence 77433
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=1.9e-06 Score=57.16 Aligned_cols=37 Identities=32% Similarity=0.563 Sum_probs=15.3
Q ss_pred CCcEEEcccCCCCccchhhcCCcccceeeeecCCCCC
Q 012694 174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS 210 (458)
Q Consensus 174 ~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~ 210 (458)
+|++|++++|+|+.+|+.+++|++|++|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 3444444444444444334444444444444444443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.20 E-value=2.2e-06 Score=74.95 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=50.8
Q ss_pred CCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhc-CCCCccEEEeeCCCCCCCc--hhhcCCCCCcEEEcC
Q 012694 174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIG-LLLNLKVLNVSGNKLNTLP--ESIARCSSLVELDAS 250 (458)
Q Consensus 174 ~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~-~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~ 250 (458)
+...++|++|.+..++ .|..++.|.+|.+.+|+|+.+...+. .+++|+.|.+.+|.|.++. ..+.
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa----------- 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA----------- 110 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc-----------
Confidence 3444555555554442 34455555555555555555533332 2344555555555444332 1223
Q ss_pred CCCCCcCCchhhccCCCCCEEeccCCcCccCC----ccccCCCCCcEEEcccCCC
Q 012694 251 FNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP----PSICEMRSLKYLDAHFNEL 301 (458)
Q Consensus 251 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~----~~l~~l~~L~~L~l~~n~l 301 (458)
.+|.|++|.+-+|.++.-. ..+..+++|+.||..+-..
T Consensus 111 -------------~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 111 -------------SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred -------------cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 3445555555555444222 2456677777777665433
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=1.9e-06 Score=57.10 Aligned_cols=38 Identities=42% Similarity=0.658 Sum_probs=23.6
Q ss_pred ccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCC
Q 012694 197 KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234 (458)
Q Consensus 197 ~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l 234 (458)
+|++|++++|+|+++|..++++++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 56666666666666665566666666666666666654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=3.1e-06 Score=89.86 Aligned_cols=150 Identities=24% Similarity=0.255 Sum_probs=105.0
Q ss_pred CCCccEEEeeCCCCC--CCchhhcC-CCCCcEEEcCCCCCCcCC-chhhccCCCCCEEeccCCcCccCCccccCCCCCcE
Q 012694 218 LLNLKVLNVSGNKLN--TLPESIAR-CSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKY 293 (458)
Q Consensus 218 l~~L~~L~l~~n~l~--~l~~~l~~-l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~ 293 (458)
-.+|++|+++|...- .-+..++. +|+|+.|.+++-.+..-. ...+.++|+|..||+++++++.+ .++..+++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 468999999986322 23344444 799999999987665322 34566899999999999999988 78899999999
Q ss_pred EEcccCCCCCcc--ccccCCCcccEEEccCCCCCCCc-cc----hhhcCCCCCCEEeccCCCCCC-C-chhhhCCCCCcE
Q 012694 294 LDAHFNELHGLP--RAIGKLTRLEVLNLSSNFNDLTE-LP----ETIGDLINLRELDLSNNQIRA-L-PDTFFRLENLTK 364 (458)
Q Consensus 294 L~l~~n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~~-l~----~~l~~l~~L~~L~L~~n~l~~-l-~~~l~~l~~L~~ 364 (458)
|.+.+=.+..-. ..+.++++|+.||+|........ +. +.-..+++|+.||.|++.+.. + ...+..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 998887776622 34678999999999975222111 21 222458999999999888772 2 223334456665
Q ss_pred EECc
Q 012694 365 LNLD 368 (458)
Q Consensus 365 L~L~ 368 (458)
+.+-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5533
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=8.1e-06 Score=86.75 Aligned_cols=131 Identities=22% Similarity=0.238 Sum_probs=85.8
Q ss_pred CCCceeEEEecCCCCC--ccchhh-CCCCCCcEEEcccCCCC--ccchhhcCCcccceeeeecCCCCCCchhhcCCCCcc
Q 012694 148 SGVVVETVDLADRQLK--LLPEAF-GRLRGLVSLNLSRNLLE--AMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLK 222 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~--~l~~~~-~~l~~L~~L~l~~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~ 222 (458)
...+|+.|+++|...- .-+..+ ..+|+|+.|.+.+-.+. ++.....++++|..||+|+++++.+ .+++++++|+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 3456888888875432 112222 34688888888876554 2234456788888888888888887 6788888888
Q ss_pred EEEeeCCCCCCCc--hhhcCCCCCcEEEcCCCCCCcCCc------hhhccCCCCCEEeccCCcCc
Q 012694 223 VLNVSGNKLNTLP--ESIARCSSLVELDASFNNLVCLPT------NIGYGLLNLERLSIKLNKLR 279 (458)
Q Consensus 223 ~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~ 279 (458)
.|.+.+=.+..-. ..+.++++|+.||+|.......+. ..+..+|+|+.|+.+++.+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8888776655321 366778888888888765443221 12224667777777766554
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=1.3e-06 Score=79.96 Aligned_cols=110 Identities=21% Similarity=0.216 Sum_probs=83.2
Q ss_pred hhHHHHHHhccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCc--hh
Q 012694 137 EDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP--DS 214 (458)
Q Consensus 137 ~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~--~~ 214 (458)
+.++..-.......+++.|++.||++..+. ...+++.|++|.|+-|+|+.+. .+..|++|++|+|..|.|.++. ..
T Consensus 6 e~mV~~raK~sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 6 ESMVYIRAKCSDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HHHHHHHHHhhHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHH
Confidence 334444444445677889999999998773 4567899999999999999884 5889999999999999998874 35
Q ss_pred hcCCCCccEEEeeCCCCCC-C-----chhhcCCCCCcEEE
Q 012694 215 IGLLLNLKVLNVSGNKLNT-L-----PESIARCSSLVELD 248 (458)
Q Consensus 215 l~~l~~L~~L~l~~n~l~~-l-----~~~l~~l~~L~~L~ 248 (458)
+.++++|+.|.|..|.-.. - ...+.-+++|+.||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6889999999998885441 1 12455677777765
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=3.4e-05 Score=70.39 Aligned_cols=104 Identities=27% Similarity=0.265 Sum_probs=62.2
Q ss_pred hCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecC--CCC-CCchhhcCCCCccEEEeeCCCCCCCc--hhhcCCCC
Q 012694 169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSN--LLQ-SLPDSIGLLLNLKVLNVSGNKLNTLP--ESIARCSS 243 (458)
Q Consensus 169 ~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n--~l~-~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l~~ 243 (458)
...+..|+.|.+.+..++.+ ..+..+++|++|.++.| .+. .++.....+++|++|++++|++..+. ..+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34455666666777666655 34667778888888888 333 34334455688888888888776431 23455666
Q ss_pred CcEEEcCCCCCCcCC---chhhccCCCCCEEec
Q 012694 244 LVELDASFNNLVCLP---TNIGYGLLNLERLSI 273 (458)
Q Consensus 244 L~~L~l~~n~l~~l~---~~~~~~l~~L~~L~L 273 (458)
|..|++.+|..+.+. ..+|.-+++|++|+-
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 777777776655433 233434555555543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=5.1e-05 Score=69.22 Aligned_cols=104 Identities=33% Similarity=0.372 Sum_probs=68.6
Q ss_pred cCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCC--CCC-ccccccCCCcccEEEccCCCCC-CCccchhhcCCCCC
Q 012694 264 GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNE--LHG-LPRAIGKLTRLEVLNLSSNFND-LTELPETIGDLINL 339 (458)
Q Consensus 264 ~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~--l~~-l~~~l~~l~~L~~L~L~~n~~~-~~~l~~~l~~l~~L 339 (458)
.+..|+.|++.+..++++ ..+..+++|++|.++.|. +.. ++.....+++|++|++++|.+. +..+ ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcch
Confidence 345566666666666655 345567788888888883 333 4445566688888888888555 2333 335667788
Q ss_pred CEEeccCCCCCCCc----hhhhCCCCCcEEECcC
Q 012694 340 RELDLSNNQIRALP----DTFFRLENLTKLNLDQ 369 (458)
Q Consensus 340 ~~L~L~~n~l~~l~----~~l~~l~~L~~L~L~~ 369 (458)
..|++.+|..+.+- ..+.-+++|++|+-..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 88888888777552 3556678888776543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=1.1e-05 Score=73.93 Aligned_cols=79 Identities=24% Similarity=0.220 Sum_probs=49.5
Q ss_pred CCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc--ccccCCCcccEEE
Q 012694 241 CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP--RAIGKLTRLEVLN 318 (458)
Q Consensus 241 l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~ 318 (458)
+.+.+.|++.+|.+..|. +...++.|+.|.|+-|+|+++ ..+..|++|++|.|..|.|.++. ..+.++++|+.|+
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 345556666666666553 333566677777777766666 45566666677777666666654 2456666666666
Q ss_pred ccCC
Q 012694 319 LSSN 322 (458)
Q Consensus 319 L~~n 322 (458)
|..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 6666
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.36 E-value=0.00058 Score=56.73 Aligned_cols=102 Identities=18% Similarity=0.338 Sum_probs=34.5
Q ss_pred hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCCCCCc-hhhcCCCCC
Q 012694 168 AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP-ESIARCSSL 244 (458)
Q Consensus 168 ~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L 244 (458)
.|..+.+|+.+.+.. .+..++ ..|.++.+|+.+.+..+ +..++. .+.++++|+.+.+.+ .+..++ ..+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444555555443 333343 23444445555555442 443322 334444455555433 222222 123334444
Q ss_pred cEEEcCCCCCCcCCchhhccCCCCCEEecc
Q 012694 245 VELDASFNNLVCLPTNIGYGLLNLERLSIK 274 (458)
Q Consensus 245 ~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~ 274 (458)
+.+++..+ +..++...+.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 44444432 344444444333 44444433
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.34 E-value=0.00076 Score=56.02 Aligned_cols=116 Identities=22% Similarity=0.375 Sum_probs=66.8
Q ss_pred CCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEE
Q 012694 148 SGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVL 224 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L 224 (458)
.+.+|+.+.+.. .+..++. .|..+.+|+.+.+.++ +..++ ..|.++++|+.+.+.+ .+..++ ..+..+++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 456899999985 5777765 7888989999999885 77776 4588888999999976 565554 456779999999
Q ss_pred EeeCCCCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCC
Q 012694 225 NVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269 (458)
Q Consensus 225 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~ 269 (458)
.+..+ +..++. .+.++ +|+.+.+.. .+..++...+.++++|+
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 99775 666643 56666 999999886 77788888887777764
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.28 E-value=2.4e-06 Score=86.97 Aligned_cols=110 Identities=28% Similarity=0.284 Sum_probs=60.7
Q ss_pred CCCCCEEeccCCcCcc-----CCccccCCCC-CcEEEcccCCCCC-----ccccccCC-CcccEEEccCCCCCC---Ccc
Q 012694 265 LLNLERLSIKLNKLRT-----FPPSICEMRS-LKYLDAHFNELHG-----LPRAIGKL-TRLEVLNLSSNFNDL---TEL 329 (458)
Q Consensus 265 l~~L~~L~L~~n~l~~-----l~~~l~~l~~-L~~L~l~~n~l~~-----l~~~l~~l-~~L~~L~L~~n~~~~---~~l 329 (458)
..++++|.+..|.++. +...+...++ ++.|++..|.+.+ +.+.+..+ ..+++++++.|.+.- ..+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4456666666665551 1223444444 6667777777765 23445555 567777777773221 223
Q ss_pred chhhcCCCCCCEEeccCCCCCCCc-----hhhhCCCCCcEEECcCCCCCC
Q 012694 330 PETIGDLINLRELDLSNNQIRALP-----DTFFRLENLTKLNLDQNPLVI 374 (458)
Q Consensus 330 ~~~l~~l~~L~~L~L~~n~l~~l~-----~~l~~l~~L~~L~L~~n~i~~ 374 (458)
.+.+..+..++.+.+++|.+..-. ..+.....+..+.+.++....
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGT 332 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccc
Confidence 445556667777777777776321 233344555566666544433
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.20 E-value=3.4e-05 Score=74.63 Aligned_cols=82 Identities=20% Similarity=0.151 Sum_probs=51.7
Q ss_pred CCCceeEEEecCCC-CC--ccchhhCCCCCCcEEEcccC-CCCccc-h-hhcCCcccceeeeecCC-CCC--CchhhcCC
Q 012694 148 SGVVVETVDLADRQ-LK--LLPEAFGRLRGLVSLNLSRN-LLEAMP-D-SIAGLQKLEELDVSSNL-LQS--LPDSIGLL 218 (458)
Q Consensus 148 ~~~~L~~L~l~~~~-l~--~l~~~~~~l~~L~~L~l~~n-~i~~l~-~-~l~~l~~L~~L~L~~n~-l~~--l~~~l~~l 218 (458)
.+++++.|.+.++. ++ .+-..-..+++|++|++..| .|+... . --..+++|++|+++++. |++ +.....++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 57888888888875 33 11122335788999999885 566331 2 23578889999998875 443 32334555
Q ss_pred CCccEEEeeCC
Q 012694 219 LNLKVLNVSGN 229 (458)
Q Consensus 219 ~~L~~L~l~~n 229 (458)
..++.+.+.||
T Consensus 242 ~~l~~~~~kGC 252 (483)
T KOG4341|consen 242 KELEKLSLKGC 252 (483)
T ss_pred hhhhhhhhccc
Confidence 66666666655
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.86 E-value=2.9e-05 Score=79.16 Aligned_cols=93 Identities=29% Similarity=0.328 Sum_probs=47.1
Q ss_pred CCCCCcEEEcccCCCCC-----ccccccCCCc-ccEEEccCCCCCCC---ccchhhcCC-CCCCEEeccCCCCC-----C
Q 012694 287 EMRSLKYLDAHFNELHG-----LPRAIGKLTR-LEVLNLSSNFNDLT---ELPETIGDL-INLRELDLSNNQIR-----A 351 (458)
Q Consensus 287 ~l~~L~~L~l~~n~l~~-----l~~~l~~l~~-L~~L~L~~n~~~~~---~l~~~l~~l-~~L~~L~L~~n~l~-----~ 351 (458)
...++++|.+++|.++. +...+...+. +..|++..|..+.. .+...+..+ ..++.++++.|.|+ .
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 34456666666666554 2223444444 55566666522211 122233334 45566666666665 2
Q ss_pred CchhhhCCCCCcEEECcCCCCCCCcHHH
Q 012694 352 LPDTFFRLENLTKLNLDQNPLVIPPMEI 379 (458)
Q Consensus 352 l~~~l~~l~~L~~L~L~~n~i~~~~~~~ 379 (458)
+...+..++.++++.++.|++.......
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~~~~~~ 309 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTDYGVEL 309 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccccHHHHH
Confidence 2344555566666666666666544333
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.65 E-value=0.00031 Score=68.17 Aligned_cols=223 Identities=22% Similarity=0.135 Sum_probs=131.0
Q ss_pred CCCceeEEEecCC-CCCc--cchhhCCCCCCcEEEcccC-CCCc--cchhhcCCcccceeeeecCCCCC---CchhhcCC
Q 012694 148 SGVVVETVDLADR-QLKL--LPEAFGRLRGLVSLNLSRN-LLEA--MPDSIAGLQKLEELDVSSNLLQS---LPDSIGLL 218 (458)
Q Consensus 148 ~~~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~L~l~~n-~i~~--l~~~l~~l~~L~~L~L~~n~l~~---l~~~l~~l 218 (458)
.+++++.|++..| .++. +-.....+++|++|+++.+ .|+. +-..+.++..++.+.+.+|.=.. +-..-..+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 5788999999885 4552 2223456889999999988 4442 33345677777877777653111 11111334
Q ss_pred CCccEEEeeCC-CCCCC--chhhcCCCCCcEEEcCCCC-CCcCC-chhhccCCCCCEEeccCCc-CccC--CccccCCCC
Q 012694 219 LNLKVLNVSGN-KLNTL--PESIARCSSLVELDASFNN-LVCLP-TNIGYGLLNLERLSIKLNK-LRTF--PPSICEMRS 290 (458)
Q Consensus 219 ~~L~~L~l~~n-~l~~l--~~~l~~l~~L~~L~l~~n~-l~~l~-~~~~~~l~~L~~L~L~~n~-l~~l--~~~l~~l~~ 290 (458)
..+..+++..| .++.. -..-..+..|+.|+.+++. ++... ..+..+..+|+.|-+..++ ++.. ..--.+.+.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 45666665555 34422 1222346777888877764 33222 2344567788888887774 2211 111235667
Q ss_pred CcEEEcccCCCCC---ccccccCCCcccEEEccCCCCCCCc-----cchhhcCCCCCCEEeccCCCCC--CCchhhhCCC
Q 012694 291 LKYLDAHFNELHG---LPRAIGKLTRLEVLNLSSNFNDLTE-----LPETIGDLINLRELDLSNNQIR--ALPDTFFRLE 360 (458)
Q Consensus 291 L~~L~l~~n~l~~---l~~~l~~l~~L~~L~L~~n~~~~~~-----l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~ 360 (458)
|+.+++..+.... +-..-.+++.|++|.++.|. .++. +...-.....|+.+.|+++... ..-..+..++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce-~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE-LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhh-hhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 8888877775433 22233467788888888762 1221 1222345677888888888544 2235677788
Q ss_pred CCcEEECcCCC
Q 012694 361 NLTKLNLDQNP 371 (458)
Q Consensus 361 ~L~~L~L~~n~ 371 (458)
+|+.+++-+++
T Consensus 427 ~Leri~l~~~q 437 (483)
T KOG4341|consen 427 NLERIELIDCQ 437 (483)
T ss_pred ccceeeeechh
Confidence 88888887764
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.39 E-value=0.00086 Score=69.00 Aligned_cols=105 Identities=26% Similarity=0.273 Sum_probs=45.3
Q ss_pred CCceeEEEecCC-CCCc--cchhhCCCCCCcEEEcccC--CCCccc----hhhcCCcccceeeeecCC-CCCCc-hhh-c
Q 012694 149 GVVVETVDLADR-QLKL--LPEAFGRLRGLVSLNLSRN--LLEAMP----DSIAGLQKLEELDVSSNL-LQSLP-DSI-G 216 (458)
Q Consensus 149 ~~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~L~l~~n--~i~~l~----~~l~~l~~L~~L~L~~n~-l~~l~-~~l-~ 216 (458)
.+.++.|.+.++ .+.. +-.....+++|+.|+++++ .++..+ .....+.+|+.|+++.+. +++.. ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 345555555544 2222 2233444555555555542 111111 122334555555555554 44321 111 2
Q ss_pred CCCCccEEEeeCCC-CC--CCchhhcCCCCCcEEEcCCCC
Q 012694 217 LLLNLKVLNVSGNK-LN--TLPESIARCSSLVELDASFNN 253 (458)
Q Consensus 217 ~l~~L~~L~l~~n~-l~--~l~~~l~~l~~L~~L~l~~n~ 253 (458)
.+++|++|.+.++. ++ .+......++.|++|+++.|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24555555554443 33 222233345555555555543
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.05 E-value=0.001 Score=68.43 Aligned_cols=34 Identities=29% Similarity=0.236 Sum_probs=18.1
Q ss_pred CCCCcEEEcccC-CCCc--cchhhcCCcccceeeeec
Q 012694 172 LRGLVSLNLSRN-LLEA--MPDSIAGLQKLEELDVSS 205 (458)
Q Consensus 172 l~~L~~L~l~~n-~i~~--l~~~l~~l~~L~~L~L~~ 205 (458)
++.|+.|.+.++ .++. +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 455666666555 3443 323445556666666654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.48 E-value=0.0041 Score=34.33 Aligned_cols=20 Identities=45% Similarity=0.760 Sum_probs=12.1
Q ss_pred CCCEEeccCCCCCCCchhhh
Q 012694 338 NLRELDLSNNQIRALPDTFF 357 (458)
Q Consensus 338 ~L~~L~L~~n~l~~l~~~l~ 357 (458)
+|++|++++|+|+.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665444
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.0079 Score=33.15 Aligned_cols=10 Identities=50% Similarity=0.474 Sum_probs=3.6
Q ss_pred EEEcccCCCC
Q 012694 177 SLNLSRNLLE 186 (458)
Q Consensus 177 ~L~l~~n~i~ 186 (458)
+|++++|+++
T Consensus 4 ~Ldls~n~l~ 13 (22)
T PF00560_consen 4 YLDLSGNNLT 13 (22)
T ss_dssp EEEETSSEES
T ss_pred EEECCCCcCE
Confidence 3333333333
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.97 E-value=0.00087 Score=60.24 Aligned_cols=85 Identities=22% Similarity=0.185 Sum_probs=64.6
Q ss_pred CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694 148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS 227 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~ 227 (458)
..+..+.||++.|++-.+...|+.++.|..|+++.|.|..+|..++.+..++.+++..|..+..|-+++..++++++++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 45667788888887776666677777777888888877777777777777777777777777777777777888887777
Q ss_pred CCCCC
Q 012694 228 GNKLN 232 (458)
Q Consensus 228 ~n~l~ 232 (458)
+|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 77654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.69 E-value=0.00078 Score=60.54 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=78.4
Q ss_pred hhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEE
Q 012694 168 AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVEL 247 (458)
Q Consensus 168 ~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L 247 (458)
.+......+.|+++.|++..+...|..++.|..|+++.|++..+|..++.+..++.+++..|..+..|.++...+.++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 45667888999999999888877788889999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 012694 248 DASFNNLV 255 (458)
Q Consensus 248 ~l~~n~l~ 255 (458)
+.-.|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99888765
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.43 E-value=0.023 Score=29.10 Aligned_cols=15 Identities=67% Similarity=0.979 Sum_probs=6.5
Q ss_pred CCCEEeccCCCCCCC
Q 012694 338 NLRELDLSNNQIRAL 352 (458)
Q Consensus 338 ~L~~L~L~~n~l~~l 352 (458)
+|+.|++++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555544
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.70 E-value=0.042 Score=28.13 Aligned_cols=11 Identities=45% Similarity=0.842 Sum_probs=3.1
Q ss_pred ccEEEeeCCCC
Q 012694 221 LKVLNVSGNKL 231 (458)
Q Consensus 221 L~~L~l~~n~l 231 (458)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.66 E-value=0.24 Score=28.27 Aligned_cols=21 Identities=43% Similarity=0.433 Sum_probs=11.0
Q ss_pred CCCcEEEcCCCCCCcCCchhh
Q 012694 242 SSLVELDASFNNLVCLPTNIG 262 (458)
Q Consensus 242 ~~L~~L~l~~n~l~~l~~~~~ 262 (458)
++|+.|++++|.++.+|.+.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555554443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.66 E-value=0.24 Score=28.27 Aligned_cols=21 Identities=43% Similarity=0.433 Sum_probs=11.0
Q ss_pred CCCcEEEcCCCCCCcCCchhh
Q 012694 242 SSLVELDASFNNLVCLPTNIG 262 (458)
Q Consensus 242 ~~L~~L~l~~n~l~~l~~~~~ 262 (458)
++|+.|++++|.++.+|.+.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555554443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.54 E-value=0.38 Score=27.38 Aligned_cols=16 Identities=81% Similarity=1.178 Sum_probs=8.1
Q ss_pred CCCEEeccCCCCCCCc
Q 012694 338 NLRELDLSNNQIRALP 353 (458)
Q Consensus 338 ~L~~L~L~~n~l~~l~ 353 (458)
+|+.|+|++|+|+.+|
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00370 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 4455555555555554
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.54 E-value=0.38 Score=27.38 Aligned_cols=16 Identities=81% Similarity=1.178 Sum_probs=8.1
Q ss_pred CCCEEeccCCCCCCCc
Q 012694 338 NLRELDLSNNQIRALP 353 (458)
Q Consensus 338 ~L~~L~L~~n~l~~l~ 353 (458)
+|+.|+|++|+|+.+|
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00369 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 4455555555555554
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.27 E-value=0.11 Score=46.17 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=48.5
Q ss_pred CCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCcc-chhhc-CCCCCCEEeccCC-CCCCC-chhhhCCCCCcE
Q 012694 290 SLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTEL-PETIG-DLINLRELDLSNN-QIRAL-PDTFFRLENLTK 364 (458)
Q Consensus 290 ~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~-~l~~L~~L~L~~n-~l~~l-~~~l~~l~~L~~ 364 (458)
.++.++-+++.|.... +.+..++.++.|.+.+| ..+.+. -+-++ -.++|+.|++++| +||+- -.++..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c-k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC-KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc-cchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4566666666665532 44666677777777766 122211 01122 3468888888887 78744 256777888888
Q ss_pred EECcCC
Q 012694 365 LNLDQN 370 (458)
Q Consensus 365 L~L~~n 370 (458)
|.|.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 887653
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.41 E-value=0.83 Score=26.18 Aligned_cols=18 Identities=50% Similarity=0.872 Sum_probs=13.9
Q ss_pred CCCCEEeccCCCCCCCch
Q 012694 337 INLRELDLSNNQIRALPD 354 (458)
Q Consensus 337 ~~L~~L~L~~n~l~~l~~ 354 (458)
.+|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367888888888888874
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.96 E-value=0.29 Score=43.49 Aligned_cols=63 Identities=29% Similarity=0.273 Sum_probs=32.0
Q ss_pred cccCCCCCcEEEcccCCCC-C--ccccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCC
Q 012694 284 SICEMRSLKYLDAHFNELH-G--LPRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNN 347 (458)
Q Consensus 284 ~l~~l~~L~~L~l~~n~l~-~--l~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n 347 (458)
.+.+++.++.|.+.+|.-- + +...-+-.++|+.|+|++|. .+++- ..++..+++|+.|.+.+=
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP-RITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC-eechhHHHHHHHhhhhHHHHhcCc
Confidence 3445555555555555321 1 11111134677777777772 23321 245666777777766553
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.50 E-value=0.42 Score=26.64 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=8.1
Q ss_pred CCCcEEECcCCCCCC
Q 012694 360 ENLTKLNLDQNPLVI 374 (458)
Q Consensus 360 ~~L~~L~L~~n~i~~ 374 (458)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 566666666666653
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.30 E-value=1.4 Score=25.25 Aligned_cols=16 Identities=56% Similarity=0.858 Sum_probs=11.2
Q ss_pred CCCCEEeccCCCCCCC
Q 012694 337 INLRELDLSNNQIRAL 352 (458)
Q Consensus 337 ~~L~~L~L~~n~l~~l 352 (458)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4677777777777655
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.27 E-value=1.6 Score=25.49 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=13.5
Q ss_pred CCCcEEECcCCCCCCCcHHH
Q 012694 360 ENLTKLNLDQNPLVIPPMEI 379 (458)
Q Consensus 360 ~~L~~L~L~~n~i~~~~~~~ 379 (458)
++|++|+|++|.+.......
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 46788888888876544433
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.50 E-value=4.8 Score=41.30 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=17.1
Q ss_pred cCCCCCEEeccCCcCccCC---ccccCCCCCcEEEcccC
Q 012694 264 GLLNLERLSIKLNKLRTFP---PSICEMRSLKYLDAHFN 299 (458)
Q Consensus 264 ~l~~L~~L~L~~n~l~~l~---~~l~~l~~L~~L~l~~n 299 (458)
+.+.+..+++++|++..+. .--...++|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4455566666666554331 11122344555555555
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.26 E-value=7.5 Score=21.97 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=6.9
Q ss_pred CCCcEEECcCCC
Q 012694 360 ENLTKLNLDQNP 371 (458)
Q Consensus 360 ~~L~~L~L~~n~ 371 (458)
++|++|+|++|+
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666653
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=46.62 E-value=14 Score=45.46 Aligned_cols=33 Identities=33% Similarity=0.525 Sum_probs=23.1
Q ss_pred eccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694 343 DLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 343 ~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
||++|+|+.|+ ..|..+++|++|+|++|++.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 46777777775 3566677777777777777653
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.96 E-value=15 Score=37.93 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=17.6
Q ss_pred CCcccceeeeecCCCCCCc---hhhcCCCCccEEEeeCC
Q 012694 194 GLQKLEELDVSSNLLQSLP---DSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 194 ~l~~L~~L~L~~n~l~~l~---~~l~~l~~L~~L~l~~n 229 (458)
+.+.+..+.|++|++..+. .--...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3445555556666554431 11123455555555555
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=35.72 E-value=65 Score=32.82 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCCEEeccCCCCCCCc----hhhhCCCCCcEEECcCCCCCCCc
Q 012694 338 NLRELDLSNNQIRALP----DTFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 338 ~L~~L~L~~n~l~~l~----~~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
-+..+.++.|.+..-+ ..+..-+.+..|++++|.....+
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~g 456 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGG 456 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCC
Confidence 3566666666665322 23344566777777777655443
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=27.81 E-value=3.4e+02 Score=27.93 Aligned_cols=220 Identities=18% Similarity=0.027 Sum_probs=100.8
Q ss_pred CceeEEEecCCCCC-ccchhh---CCCCCCcEEEcccCCCC--cc--chhhcCCcccceeeeecCCCC-----CCch---
Q 012694 150 VVVETVDLADRQLK-LLPEAF---GRLRGLVSLNLSRNLLE--AM--PDSIAGLQKLEELDVSSNLLQ-----SLPD--- 213 (458)
Q Consensus 150 ~~L~~L~l~~~~l~-~l~~~~---~~l~~L~~L~l~~n~i~--~l--~~~l~~l~~L~~L~L~~n~l~-----~l~~--- 213 (458)
..+..++++.|... .+|..+ ..-..++.++.+...+. .+ +-..+.-++|...+++.|..+ +++.
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k 293 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEK 293 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccc
Confidence 34677778777665 444322 22234666666665544 11 112344566777777766433 2322
Q ss_pred -hhcCCCCccEEEeeCCCCC--CCchhhcC-----CCCCcEEEcCCCCCCcC---CchhhccCCCCCEEeccCCcCccCC
Q 012694 214 -SIGLLLNLKVLNVSGNKLN--TLPESIAR-----CSSLVELDASFNNLVCL---PTNIGYGLLNLERLSIKLNKLRTFP 282 (458)
Q Consensus 214 -~l~~l~~L~~L~l~~n~l~--~l~~~l~~-----l~~L~~L~l~~n~l~~l---~~~~~~~l~~L~~L~L~~n~l~~l~ 282 (458)
.+..-+++ +|++..++.. .++..+-. -+.=-.+++..|....- ...+ +=..++++.+..|.+..-.
T Consensus 294 ~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci--~g~R~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 294 DTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACI--FGQRVQVLLQRDNNLDGEG 370 (553)
T ss_pred cccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccc--cceeeeEeecccccccccc
Confidence 23334555 6666655432 11111100 11112344444443311 1111 1123666666666554211
Q ss_pred c---cccCCCCCcEEEcccCCCCC---c-----cccc--cCCCcccEEEccCCCCCCCccc----hhhcCCCCCCEEecc
Q 012694 283 P---SICEMRSLKYLDAHFNELHG---L-----PRAI--GKLTRLEVLNLSSNFNDLTELP----ETIGDLINLRELDLS 345 (458)
Q Consensus 283 ~---~l~~l~~L~~L~l~~n~l~~---l-----~~~l--~~l~~L~~L~L~~n~~~~~~l~----~~l~~l~~L~~L~L~ 345 (458)
. .+..-++.+.+.+.+-.-.. . +... ....-+..+.++.| ....-+ ..+..-+.+..|+++
T Consensus 371 ~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~--~lka~l~s~in~l~stqtl~kldis 448 (553)
T KOG4242|consen 371 GAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPG--PLKAGLESAINKLLSTQTLAKLDIS 448 (553)
T ss_pred ccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCC--cccccHHHHHHhhccCccccccccc
Confidence 1 23334556666654432211 0 0000 01122455566655 222211 123455677888888
Q ss_pred CCCCCCC-----chhhhCCCCCcEEECcCCCCCC
Q 012694 346 NNQIRAL-----PDTFFRLENLTKLNLDQNPLVI 374 (458)
Q Consensus 346 ~n~l~~l-----~~~l~~l~~L~~L~L~~n~i~~ 374 (458)
+|..... |..+..-..+..+..+.|..+.
T Consensus 449 gn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~ 482 (553)
T KOG4242|consen 449 GNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPED 482 (553)
T ss_pred CCCcccCCCCcCccccCCCCccCCCCCCCCCccc
Confidence 8866532 3444445566666666666554
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.33 E-value=69 Score=39.91 Aligned_cols=31 Identities=35% Similarity=0.423 Sum_probs=25.3
Q ss_pred EeeCCCCCCCch-hhcCCCCCcEEEcCCCCCC
Q 012694 225 NVSGNKLNTLPE-SIARCSSLVELDASFNNLV 255 (458)
Q Consensus 225 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~ 255 (458)
||++|+|+.|+. .|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 578899998875 5667889999999998765
Done!