Query 012694
Match_columns 458
No_of_seqs 478 out of 4056
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 100.0 1.2E-28 4E-33 240.3 20.2 227 148-376 79-317 (328)
2 1xku_A Decorin; proteoglycan, 99.9 1.3E-26 4.4E-31 225.9 21.8 225 150-380 52-283 (330)
3 2z66_A Variable lymphocyte rec 99.9 3.5E-27 1.2E-31 227.4 16.9 224 150-375 28-263 (306)
4 1ogq_A PGIP-2, polygalacturona 99.9 4.3E-27 1.5E-31 227.7 16.5 222 150-375 50-283 (313)
5 4fcg_A Uncharacterized protein 99.9 1.2E-26 4.2E-31 226.0 19.2 206 171-377 79-294 (328)
6 2z80_A TOLL-like receptor 2, v 99.9 6E-27 2.1E-31 230.5 15.7 228 150-377 52-318 (353)
7 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-26 5.9E-31 225.3 18.3 224 150-380 54-284 (332)
8 1ozn_A Reticulon 4 receptor; N 99.9 5E-26 1.7E-30 217.1 21.1 220 152-375 13-240 (285)
9 3o6n_A APL1; leucine-rich repe 99.9 3.5E-26 1.2E-30 228.0 20.1 225 149-376 68-334 (390)
10 3zyi_A Leucine-rich repeat-con 99.9 5.5E-26 1.9E-30 231.2 21.0 223 150-375 75-305 (452)
11 3zyj_A Leucine-rich repeat-con 99.9 6E-26 2E-30 230.1 20.8 223 150-375 64-294 (440)
12 1ogq_A PGIP-2, polygalacturona 99.9 4.4E-27 1.5E-31 227.6 11.4 227 145-375 71-307 (313)
13 4ecn_A Leucine-rich repeat pro 99.9 1E-25 3.5E-30 244.1 22.1 227 149-378 572-824 (876)
14 3o6n_A APL1; leucine-rich repe 99.9 9E-26 3.1E-30 225.1 20.0 221 146-374 89-353 (390)
15 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-26 9.8E-31 222.3 15.0 217 148-374 32-251 (317)
16 3oja_B Anopheles plasmodium-re 99.9 1.4E-25 4.8E-30 236.1 20.1 225 149-376 74-340 (597)
17 4eco_A Uncharacterized protein 99.9 5.1E-26 1.7E-30 241.1 16.8 227 148-377 328-583 (636)
18 2z66_A Variable lymphocyte rec 99.9 9.8E-26 3.4E-30 217.2 17.1 223 153-379 10-242 (306)
19 1xku_A Decorin; proteoglycan, 99.9 5.5E-25 1.9E-29 214.3 22.1 222 146-374 72-307 (330)
20 4fmz_A Internalin; leucine ric 99.9 1.4E-24 4.7E-29 212.8 25.0 219 146-375 62-280 (347)
21 3rgz_A Protein brassinosteroid 99.9 1.7E-25 5.8E-30 242.2 19.9 227 148-375 416-719 (768)
22 4ecn_A Leucine-rich repeat pro 99.9 3.2E-25 1.1E-29 240.2 20.5 231 145-377 590-844 (876)
23 4fmz_A Internalin; leucine ric 99.9 3.5E-24 1.2E-28 210.0 25.8 221 146-377 84-304 (347)
24 4eco_A Uncharacterized protein 99.9 7.2E-26 2.4E-30 239.9 14.7 230 146-378 202-475 (636)
25 3v47_A TOLL-like receptor 5B a 99.9 5.9E-25 2E-29 223.5 20.8 131 243-375 276-410 (455)
26 3oja_A Leucine-rich immune mol 99.9 1.2E-25 4.2E-30 230.5 15.7 218 148-375 32-252 (487)
27 3oja_B Anopheles plasmodium-re 99.9 4.4E-25 1.5E-29 232.3 20.2 222 146-375 95-360 (597)
28 3v47_A TOLL-like receptor 5B a 99.9 7.2E-25 2.4E-29 222.8 20.8 112 267-380 276-391 (455)
29 3zyj_A Leucine-rich repeat-con 99.9 6E-25 2.1E-29 222.7 20.1 224 152-380 45-275 (440)
30 2ft3_A Biglycan; proteoglycan, 99.9 5.8E-25 2E-29 214.4 19.2 220 146-373 74-307 (332)
31 1wwl_A Monocyte differentiatio 99.9 5.2E-26 1.8E-30 220.0 11.6 219 152-375 65-311 (312)
32 3zyi_A Leucine-rich repeat-con 99.9 7.2E-25 2.5E-29 222.9 20.1 225 151-380 55-286 (452)
33 2id5_A Lingo-1, leucine rich r 99.9 6.8E-25 2.3E-29 224.5 18.9 228 150-377 32-289 (477)
34 2z62_A TOLL-like receptor 4, v 99.9 7.9E-25 2.7E-29 207.7 17.9 219 154-376 11-240 (276)
35 2id5_A Lingo-1, leucine rich r 99.9 1.1E-24 3.8E-29 223.0 19.8 225 149-375 79-335 (477)
36 3rgz_A Protein brassinosteroid 99.9 9.5E-25 3.2E-29 236.3 20.3 229 149-378 393-698 (768)
37 3bz5_A Internalin-J, INLJ; leu 99.9 3.8E-24 1.3E-28 217.7 22.9 208 149-376 41-249 (457)
38 2z80_A TOLL-like receptor 2, v 99.9 4.7E-25 1.6E-29 216.9 15.0 228 149-380 30-297 (353)
39 1o6v_A Internalin A; bacterial 99.9 7.3E-24 2.5E-28 216.3 24.2 220 149-377 67-326 (466)
40 1ozn_A Reticulon 4 receptor; N 99.9 5.8E-25 2E-29 209.7 14.5 225 149-375 31-263 (285)
41 1h6u_A Internalin H; cell adhe 99.9 2.2E-24 7.5E-29 208.2 17.4 193 150-353 41-233 (308)
42 3t6q_A CD180 antigen; protein- 99.9 3.3E-24 1.1E-28 225.9 19.9 229 148-376 276-516 (606)
43 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-24 6.6E-29 227.7 17.3 228 146-375 303-560 (606)
44 1o6v_A Internalin A; bacterial 99.9 2.5E-23 8.4E-28 212.4 24.9 218 148-376 110-347 (466)
45 1p9a_G Platelet glycoprotein I 99.9 8.1E-24 2.8E-28 202.4 19.7 199 171-375 8-210 (290)
46 3t6q_A CD180 antigen; protein- 99.9 4E-24 1.4E-28 225.3 18.6 221 151-373 34-338 (606)
47 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-23 4.5E-28 217.3 21.8 113 264-378 322-462 (520)
48 2o6q_A Variable lymphocyte rec 99.9 2.4E-23 8.2E-28 197.0 21.3 199 174-376 17-221 (270)
49 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-23 7.1E-28 215.8 22.5 135 239-375 321-483 (520)
50 1h6u_A Internalin H; cell adhe 99.9 1.3E-23 4.3E-28 202.8 19.0 211 157-379 26-236 (308)
51 1p9a_G Platelet glycoprotein I 99.9 2E-23 6.8E-28 199.6 19.3 200 147-351 7-209 (290)
52 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-23 1.1E-27 217.6 22.1 209 150-378 61-302 (622)
53 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.8E-23 2E-27 214.6 23.5 113 264-378 351-491 (562)
54 3bz5_A Internalin-J, INLJ; leu 99.9 6.8E-23 2.3E-27 208.4 23.0 208 146-374 60-268 (457)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.4E-23 1.9E-27 214.8 22.9 134 240-375 351-512 (562)
56 3vq2_A TLR4, TOLL-like recepto 99.9 8.3E-24 2.8E-28 222.9 16.4 230 146-378 281-539 (606)
57 1wwl_A Monocyte differentiatio 99.9 1.3E-23 4.3E-28 203.2 15.7 200 148-352 93-311 (312)
58 2ca6_A RAN GTPase-activating p 99.9 2.4E-24 8.1E-29 214.5 10.3 246 139-386 21-331 (386)
59 2z63_A TOLL-like receptor 4, v 99.9 1.4E-23 4.9E-28 219.2 16.0 225 148-375 280-533 (570)
60 2o6q_A Variable lymphocyte rec 99.9 1E-22 3.4E-27 192.7 20.0 197 151-351 17-219 (270)
61 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-24 5.8E-29 209.8 7.5 213 147-369 55-271 (317)
62 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-23 9.1E-28 216.3 16.9 107 268-376 312-426 (549)
63 1ziw_A TOLL-like receptor 3; i 99.9 1E-22 3.5E-27 217.5 20.2 229 148-378 351-602 (680)
64 2xwt_C Thyrotropin receptor; s 99.9 9.5E-23 3.3E-27 189.2 16.9 202 162-371 23-237 (239)
65 4glp_A Monocyte differentiatio 99.9 3.8E-23 1.3E-27 199.6 14.8 221 150-375 64-309 (310)
66 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-22 1.2E-26 209.6 23.0 206 150-378 40-279 (622)
67 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-22 5.8E-27 210.2 19.6 173 199-374 313-511 (549)
68 1jl5_A Outer protein YOPM; leu 99.9 9.4E-23 3.2E-27 207.2 16.7 202 150-375 91-292 (454)
69 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-22 4.5E-27 216.6 18.3 225 150-376 25-288 (680)
70 2z62_A TOLL-like receptor 4, v 99.9 1.4E-22 4.9E-27 192.1 16.5 200 150-351 28-238 (276)
71 2xwt_C Thyrotropin receptor; s 99.9 1.3E-22 4.5E-27 188.2 15.3 193 150-347 31-236 (239)
72 3oja_A Leucine-rich immune mol 99.9 2.1E-23 7.3E-28 213.8 10.3 213 146-368 54-270 (487)
73 3j0a_A TOLL-like receptor 5; m 99.9 3.9E-22 1.3E-26 217.9 20.9 107 267-375 267-377 (844)
74 3rfs_A Internalin B, repeat mo 99.9 2E-22 7E-27 190.8 15.0 203 149-361 40-247 (272)
75 3j0a_A TOLL-like receptor 5; m 99.9 4.7E-22 1.6E-26 217.3 19.2 229 148-378 46-356 (844)
76 2z63_A TOLL-like receptor 4, v 99.9 4E-22 1.4E-26 208.2 16.1 129 151-280 29-163 (570)
77 3cvr_A Invasion plasmid antige 99.9 8.9E-22 3.1E-26 204.2 18.4 187 150-359 59-253 (571)
78 1jl5_A Outer protein YOPM; leu 99.9 2.5E-21 8.6E-26 196.6 20.9 207 151-375 132-372 (454)
79 4glp_A Monocyte differentiatio 99.9 4.3E-22 1.5E-26 192.2 12.6 198 149-351 90-308 (310)
80 3rfs_A Internalin B, repeat mo 99.9 2.1E-21 7.1E-26 183.8 15.9 178 194-375 39-220 (272)
81 4g8a_A TOLL-like receptor 4; l 99.9 5.4E-21 1.8E-25 201.8 20.8 74 305-380 487-562 (635)
82 3cvr_A Invasion plasmid antige 99.9 1.8E-21 6.2E-26 201.8 16.4 183 173-378 59-248 (571)
83 1h6t_A Internalin B; cell adhe 99.9 4.4E-21 1.5E-25 183.5 15.9 189 154-353 28-216 (291)
84 3m19_A Variable lymphocyte rec 99.9 1.6E-20 5.5E-25 175.5 18.8 176 197-376 15-195 (251)
85 1h6t_A Internalin B; cell adhe 99.8 1.1E-20 3.7E-25 180.7 15.9 165 150-322 46-210 (291)
86 2ca6_A RAN GTPase-activating p 99.8 3.8E-22 1.3E-26 198.5 5.7 224 151-374 10-288 (386)
87 3m19_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 173.6 17.5 170 151-322 15-189 (251)
88 2ast_B S-phase kinase-associat 99.8 1.5E-21 5.2E-26 190.2 8.0 216 152-370 49-282 (336)
89 3goz_A Leucine-rich repeat-con 99.8 1.7E-21 5.8E-26 192.2 7.6 225 149-375 21-299 (362)
90 2ast_B S-phase kinase-associat 99.8 2.1E-21 7.2E-26 189.2 7.4 225 150-378 70-311 (336)
91 3goz_A Leucine-rich repeat-con 99.8 1.3E-20 4.3E-25 186.0 11.3 223 154-378 2-271 (362)
92 4ay9_X Follicle-stimulating ho 99.8 7.6E-20 2.6E-24 179.5 16.7 215 150-369 30-255 (350)
93 1z7x_W Ribonuclease inhibitor; 99.8 8.4E-21 2.9E-25 193.0 8.6 234 145-380 51-333 (461)
94 1m9s_A Internalin B; cell inva 99.8 4.2E-20 1.4E-24 193.5 14.1 191 152-353 23-213 (605)
95 4ay9_X Follicle-stimulating ho 99.8 1.5E-19 5.1E-24 177.5 16.8 219 153-376 12-240 (350)
96 1z7x_W Ribonuclease inhibitor; 99.8 7.8E-21 2.7E-25 193.3 6.8 225 151-377 86-358 (461)
97 1m9s_A Internalin B; cell inva 99.8 9.1E-20 3.1E-24 191.0 14.8 166 149-322 42-207 (605)
98 1xeu_A Internalin C; cellular 99.8 3.6E-20 1.2E-24 174.4 10.5 171 172-353 18-188 (263)
99 1xeu_A Internalin C; cellular 99.8 4E-20 1.4E-24 174.1 9.0 163 151-322 20-182 (263)
100 2o6s_A Variable lymphocyte rec 99.8 6.3E-19 2.2E-23 159.7 13.7 176 154-361 11-190 (208)
101 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-18 5E-23 183.2 18.2 226 148-375 326-582 (635)
102 4ezg_A Putative uncharacterize 99.8 1.6E-18 5.4E-23 155.8 13.9 148 171-322 42-191 (197)
103 1dce_A Protein (RAB geranylger 99.8 3.5E-21 1.2E-25 200.4 -4.1 193 170-367 346-567 (567)
104 4ezg_A Putative uncharacterize 99.8 1.5E-18 5.3E-23 155.8 13.4 152 193-373 41-194 (197)
105 2o6s_A Variable lymphocyte rec 99.8 1.9E-18 6.4E-23 156.6 12.9 159 149-313 27-190 (208)
106 2xot_A Amphoterin-induced prot 99.8 1.7E-18 5.9E-23 170.6 13.5 153 221-375 41-204 (361)
107 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.5E-22 153.5 16.1 152 221-376 21-175 (229)
108 1dce_A Protein (RAB geranylger 99.8 1.7E-20 5.7E-25 195.3 -4.4 193 147-344 346-567 (567)
109 2v9t_B SLIT homolog 2 protein 99.8 7.3E-18 2.5E-22 154.2 13.8 147 153-301 14-164 (220)
110 2v9t_B SLIT homolog 2 protein 99.7 1E-17 3.6E-22 153.2 14.4 150 222-375 14-167 (220)
111 2xot_A Amphoterin-induced prot 99.7 4.8E-18 1.7E-22 167.4 13.0 169 153-323 21-200 (361)
112 2v70_A SLIT-2, SLIT homolog 2 99.7 1.3E-17 4.4E-22 152.6 14.9 150 222-375 14-168 (220)
113 3e6j_A Variable lymphocyte rec 99.7 1.5E-17 5.1E-22 153.1 15.4 144 177-322 23-169 (229)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 1.3E-17 4.4E-22 152.6 13.5 147 154-302 15-166 (220)
115 4b8c_D Glucose-repressible alc 99.7 3.1E-18 1.1E-22 183.5 4.8 216 150-373 173-404 (727)
116 2ell_A Acidic leucine-rich nuc 99.7 1.1E-16 3.7E-21 139.8 12.6 132 173-305 24-163 (168)
117 2ell_A Acidic leucine-rich nuc 99.7 6.9E-17 2.4E-21 141.0 10.5 136 148-284 22-165 (168)
118 3ogk_B Coronatine-insensitive 99.7 1.2E-17 4E-22 175.2 5.1 230 152-382 272-535 (592)
119 4b8c_D Glucose-repressible alc 99.6 7E-17 2.4E-21 173.0 6.5 189 173-370 173-369 (727)
120 2je0_A Acidic leucine-rich nuc 99.6 6.2E-16 2.1E-20 132.1 10.5 125 149-274 16-148 (149)
121 1a9n_A U2A', U2A'; complex (nu 99.6 4.7E-16 1.6E-20 136.9 8.6 110 148-258 17-129 (176)
122 1a9n_A U2A', U2A'; complex (nu 99.6 4.1E-16 1.4E-20 137.3 7.8 102 220-322 43-150 (176)
123 2je0_A Acidic leucine-rich nuc 99.6 8.1E-16 2.8E-20 131.4 8.7 82 173-255 17-101 (149)
124 3ogk_B Coronatine-insensitive 99.6 1.3E-16 4.5E-21 167.2 4.1 227 148-377 162-424 (592)
125 2wfh_A SLIT homolog 2 protein 99.6 3.1E-15 1.1E-19 133.8 12.4 124 153-278 13-138 (193)
126 1w8a_A SLIT protein; signaling 99.6 4.2E-15 1.4E-19 132.8 11.6 126 176-303 11-140 (192)
127 2wfh_A SLIT homolog 2 protein 99.6 6.8E-15 2.3E-19 131.5 12.7 125 176-302 13-139 (193)
128 3sb4_A Hypothetical leucine ri 99.6 2.1E-15 7.2E-20 146.5 9.9 98 265-366 225-327 (329)
129 1w8a_A SLIT protein; signaling 99.6 4.3E-15 1.5E-19 132.7 10.9 125 153-279 11-139 (192)
130 2p1m_B Transport inhibitor res 99.6 1.6E-16 5.3E-21 166.6 -2.5 226 149-376 104-388 (594)
131 1ds9_A Outer arm dynein; leuci 99.5 1.1E-16 3.8E-21 143.8 -3.5 126 152-279 25-153 (198)
132 3sb4_A Hypothetical leucine ri 99.5 1.4E-14 4.9E-19 140.6 10.3 191 149-344 48-328 (329)
133 2p1m_B Transport inhibitor res 99.5 8.6E-16 3E-20 161.0 1.1 226 146-373 261-519 (594)
134 2o6r_A Variable lymphocyte rec 99.5 7.2E-14 2.5E-18 122.9 13.0 124 153-278 10-136 (177)
135 2o6r_A Variable lymphocyte rec 99.5 8.8E-14 3E-18 122.3 13.6 127 175-303 9-138 (177)
136 1ds9_A Outer arm dynein; leuci 99.5 3.7E-16 1.3E-20 140.4 -2.7 139 230-375 36-187 (198)
137 4fdw_A Leucine rich hypothetic 99.5 4.5E-13 1.5E-17 133.4 14.2 217 149-377 134-362 (401)
138 4fdw_A Leucine rich hypothetic 99.4 1.2E-12 4.2E-17 130.2 16.2 212 149-370 156-380 (401)
139 2r9u_A Variable lymphocyte rec 99.4 2E-12 6.7E-17 113.4 11.7 101 176-278 15-117 (174)
140 3g39_A Variable lymphocyte rec 99.4 2.3E-12 8E-17 112.5 11.5 102 200-303 13-116 (170)
141 2r9u_A Variable lymphocyte rec 99.4 2.8E-12 9.7E-17 112.4 11.2 102 153-256 15-119 (174)
142 3g39_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 111.6 10.6 101 153-255 12-115 (170)
143 3un9_A NLR family member X1; l 99.3 3.5E-13 1.2E-17 132.9 1.8 177 195-373 71-283 (372)
144 3un9_A NLR family member X1; l 99.3 7.6E-13 2.6E-17 130.4 3.9 152 172-323 71-250 (372)
145 2ifg_A High affinity nerve gro 99.1 1.2E-10 4.2E-15 113.4 9.5 102 154-256 12-117 (347)
146 2ifg_A High affinity nerve gro 99.1 1.8E-10 6.3E-15 112.2 10.5 104 176-281 11-118 (347)
147 2ra8_A Uncharacterized protein 98.9 1.7E-09 5.8E-14 105.7 8.8 199 149-371 106-341 (362)
148 2ra8_A Uncharacterized protein 98.9 1.2E-09 4.2E-14 106.8 7.0 64 310-374 250-321 (362)
149 4gt6_A Cell surface protein; l 98.9 3E-08 1E-12 98.3 16.6 105 261-370 260-367 (394)
150 4fs7_A Uncharacterized protein 98.8 4.8E-08 1.6E-12 96.8 14.4 123 147-273 68-215 (394)
151 1io0_A Tropomodulin; LRR prote 98.8 4E-09 1.4E-13 93.1 5.7 110 146-255 32-164 (185)
152 4fs7_A Uncharacterized protein 98.8 4.9E-08 1.7E-12 96.7 14.3 126 237-370 248-376 (394)
153 1io0_A Tropomodulin; LRR prote 98.7 5.3E-09 1.8E-13 92.4 4.2 109 265-373 35-164 (185)
154 4gt6_A Cell surface protein; l 98.5 2.5E-06 8.7E-11 84.3 16.8 128 237-372 260-390 (394)
155 4h09_A Hypothetical leucine ri 98.3 2.8E-05 9.6E-10 76.2 18.6 80 285-368 236-318 (379)
156 4h09_A Hypothetical leucine ri 98.2 2.3E-05 7.9E-10 76.8 15.4 117 237-359 235-355 (379)
157 3rw6_A Nuclear RNA export fact 98.1 4.5E-07 1.5E-11 84.3 1.1 78 194-272 168-257 (267)
158 3rw6_A Nuclear RNA export fact 98.1 3.6E-07 1.2E-11 85.0 0.2 79 216-295 167-257 (267)
159 1pgv_A TMD-1, tropomodulin TMD 98.0 1.3E-05 4.4E-10 70.6 7.2 107 148-254 39-169 (197)
160 1pgv_A TMD-1, tropomodulin TMD 97.9 6.8E-06 2.3E-10 72.4 4.8 85 168-252 36-136 (197)
161 3e4g_A ATP synthase subunit S, 97.8 1.2E-05 4.2E-10 69.4 4.8 82 289-371 61-150 (176)
162 3e4g_A ATP synthase subunit S, 97.8 3.3E-05 1.1E-09 66.7 7.2 79 174-252 62-149 (176)
163 3rfe_A Platelet glycoprotein I 96.8 0.002 7E-08 52.6 6.1 56 316-375 12-70 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0025 8.4E-08 52.1 6.3 54 223-278 12-67 (130)
165 2lz0_A Uncharacterized protein 56.3 13 0.00046 28.0 4.3 10 240-249 18-27 (100)
166 2lz0_A Uncharacterized protein 51.8 17 0.00058 27.4 4.3 36 214-250 15-51 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.2e-28 Score=240.26 Aligned_cols=227 Identities=26% Similarity=0.332 Sum_probs=205.5
Q ss_pred CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694 148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS 227 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~ 227 (458)
....++.|++++|.++.+|..+..+++|++|++++|.++.+|..++++++|++|++++|.++.+|..+.++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 35779999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCchhhcC---------CCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcc
Q 012694 228 GNK-LNTLPESIAR---------CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH 297 (458)
Q Consensus 228 ~n~-l~~l~~~l~~---------l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~ 297 (458)
+|+ +..+|..+.. +++|++|++++|.++.+|..+. .+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 974 4577776654 9999999999999999987754 8999999999999999999999999999999999
Q ss_pred cCCCCC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCC
Q 012694 298 FNELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 298 ~n~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
+|.+.+ +|..++.+++|++|++++| ...+.+|..++.+++|+.|++++|++. .+|..++++++|+.+++..+.+...
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 988776 7888999999999999998 456788989999999999999998655 7899999999999999998877654
Q ss_pred c
Q 012694 376 P 376 (458)
Q Consensus 376 ~ 376 (458)
.
T Consensus 317 ~ 317 (328)
T 4fcg_A 317 D 317 (328)
T ss_dssp -
T ss_pred h
Confidence 3
No 2
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.3e-26 Score=225.90 Aligned_cols=225 Identities=23% Similarity=0.333 Sum_probs=197.9
Q ss_pred CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694 150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS 227 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~ 227 (458)
+.++.|++++|.++.++. .|..+++|++|++++|.++.+ |..++++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 579999999999998876 789999999999999999987 6789999999999999999999887664 799999999
Q ss_pred CCCCCCCch-hhcCCCCCcEEEcCCCCCCc--CCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694 228 GNKLNTLPE-SIARCSSLVELDASFNNLVC--LPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 228 ~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l 304 (458)
+|.++.++. .+.++++|++|++++|.++. +....+..+++|+.|++++|.++.+|..+. ++|++|++++|.++++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKV 207 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCcc
Confidence 999997754 58889999999999999874 555566689999999999999999887664 7999999999999986
Q ss_pred -cccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694 305 -PRAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIV 380 (458)
Q Consensus 305 -~~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 380 (458)
+..+..+++|++|++++| .+..++. .+..+++|++|++++|+|+.+|..+..+++|++|++++|+++..+...+
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFN--SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CTGGGTTCTTCCEEECCSS--CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CHHHhcCCCCCCEEECCCC--cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 568999999999999998 5566653 6888999999999999999999999999999999999999998876544
No 3
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.5e-27 Score=227.36 Aligned_cols=224 Identities=29% Similarity=0.360 Sum_probs=201.3
Q ss_pred CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc---chhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694 150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM---PDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN 225 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l---~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 225 (458)
+++++|++++|.++.+|. .|..+++|++|++++|.++.+ +..+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 579999999999999987 478999999999999999865 5678889999999999999999988899999999999
Q ss_pred eeCCCCCCCch--hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc--CCccccCCCCCcEEEcccCCC
Q 012694 226 VSGNKLNTLPE--SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT--FPPSICEMRSLKYLDAHFNEL 301 (458)
Q Consensus 226 l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~l~~n~l 301 (458)
+++|+++.++. .+..+++|++|++++|.++.+....+..+++|++|++++|.++. +|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 99999998764 78899999999999999998887777789999999999999985 788899999999999999999
Q ss_pred CCc-cccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCC-chhhhCCC-CCcEEECcCCCCCCC
Q 012694 302 HGL-PRAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRAL-PDTFFRLE-NLTKLNLDQNPLVIP 375 (458)
Q Consensus 302 ~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~-~L~~L~L~~n~i~~~ 375 (458)
+++ |..+..+++|++|++++| .+..++. .+..+++|+.|++++|+|+.. +..+..++ +|++|++++|++.+.
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHN--NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTS--CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCcCHHHhcCCCCCCEEECCCC--ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 997 568999999999999998 5556654 678899999999999999965 56788884 999999999999865
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.3e-27 Score=227.72 Aligned_cols=222 Identities=29% Similarity=0.405 Sum_probs=199.3
Q ss_pred CceeEEEecCCCCC---ccchhhCCCCCCcEEEccc-CCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccE
Q 012694 150 VVVETVDLADRQLK---LLPEAFGRLRGLVSLNLSR-NLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKV 223 (458)
Q Consensus 150 ~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~-n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~ 223 (458)
.+++.|+++++.++ .+|..+..+++|++|++++ |.+. .+|..++++++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5889999999999999995 8776 77888999999999999999998 67889999999999
Q ss_pred EEeeCCCCC-CCchhhcCCCCCcEEEcCCCCCC-cCCchhhccCC-CCCEEeccCCcCc-cCCccccCCCCCcEEEcccC
Q 012694 224 LNVSGNKLN-TLPESIARCSSLVELDASFNNLV-CLPTNIGYGLL-NLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFN 299 (458)
Q Consensus 224 L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~-~l~~~~~~~l~-~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n 299 (458)
|++++|.++ .+|..+..+++|++|++++|.++ .++..+. .++ +|+.|++++|.++ .+|..+..++ |++|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999998 78889999999999999999998 6666665 676 9999999999998 7788888887 999999999
Q ss_pred CCCC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCC
Q 012694 300 ELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 300 ~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
.+++ +|..+..+++|++|++++| .+...+..+..+++|++|++++|+|+ .+|..+..+++|++|++++|++++.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKN--SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSS--EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cccCcCCHHHhcCCCCCEEECCCC--ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 9987 5678999999999999998 44555555888999999999999999 7789999999999999999999843
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-26 Score=225.97 Aligned_cols=206 Identities=31% Similarity=0.420 Sum_probs=187.1
Q ss_pred CCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcC
Q 012694 171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDAS 250 (458)
Q Consensus 171 ~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~ 250 (458)
...+++.|++++|.++.+|..+.++++|++|++++|.++.+|..++++++|++|++++|.++.+|..+.++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCcCCchhh--------ccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccC
Q 012694 251 FNN-LVCLPTNIG--------YGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSS 321 (458)
Q Consensus 251 ~n~-l~~l~~~~~--------~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~ 321 (458)
+|+ ++.+|..+. .++++|+.|++++|.++.+|..+..+++|++|++++|.++++|..+..+++|++|++++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 965 456665543 35999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCCcH
Q 012694 322 NFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIPPM 377 (458)
Q Consensus 322 n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~~~ 377 (458)
| ...+.+|..++.+++|+.|++++|++. .+|..+..+++|++|+|++|++....+
T Consensus 239 n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 239 C-TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp C-TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred C-cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 8 345778888999999999999998655 678899999999999999998776543
No 6
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=6e-27 Score=230.47 Aligned_cols=228 Identities=28% Similarity=0.367 Sum_probs=199.1
Q ss_pred CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCchh-hcCCCCccEEEe
Q 012694 150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLNV 226 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l 226 (458)
++|++|++++|.++.++. .|..+++|++|++++|.++.++ ..++++++|++|++++|.++.++.. +.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 579999999999998876 7999999999999999999875 5699999999999999999999765 889999999999
Q ss_pred eCCCCCCCch--hhcCCCCCcEEEcCCC-CCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCC
Q 012694 227 SGNKLNTLPE--SIARCSSLVELDASFN-NLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELH 302 (458)
Q Consensus 227 ~~n~l~~l~~--~l~~l~~L~~L~l~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~ 302 (458)
++|+++.+|. .+..+++|++|++++| .++.++...+.++++|++|++++|.++.+ +..+..+++|++|++++|.++
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999999876 6888999999999999 58888777777899999999999999865 678899999999999999998
Q ss_pred Ccccc-ccCCCcccEEEccCCCCCCC------------------------------ccchhhcCCCCCCEEeccCCCCCC
Q 012694 303 GLPRA-IGKLTRLEVLNLSSNFNDLT------------------------------ELPETIGDLINLRELDLSNNQIRA 351 (458)
Q Consensus 303 ~l~~~-l~~l~~L~~L~L~~n~~~~~------------------------------~l~~~l~~l~~L~~L~L~~n~l~~ 351 (458)
.++.. +..+++|++|++++|..... .+|..+..+++|+.|++++|+|+.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 88753 45689999999999832211 245667889999999999999999
Q ss_pred Cchh-hhCCCCCcEEECcCCCCCCCcH
Q 012694 352 LPDT-FFRLENLTKLNLDQNPLVIPPM 377 (458)
Q Consensus 352 l~~~-l~~l~~L~~L~L~~n~i~~~~~ 377 (458)
+|.. +..+++|++|++++|++.+...
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9876 5899999999999999987643
No 7
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.7e-26 Score=225.26 Aligned_cols=224 Identities=23% Similarity=0.326 Sum_probs=190.4
Q ss_pred CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694 150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS 227 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~ 227 (458)
++++.|++++|.++.++. .|..+++|++|++++|.++.+ |..++++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 578999999999987754 788999999999999999877 5678999999999999999998887665 789999999
Q ss_pred CCCCCCCch-hhcCCCCCcEEEcCCCCCCc--CCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694 228 GNKLNTLPE-SIARCSSLVELDASFNNLVC--LPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 228 ~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l 304 (458)
+|+++.++. .+..+++|++|++++|.++. +....+..+ +|+.|++++|.++.+|..+. ++|++|++++|.++++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAI 208 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCcc
Confidence 999998865 47889999999999998864 444555455 89999999999998887654 6899999999999997
Q ss_pred c-ccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694 305 P-RAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIV 380 (458)
Q Consensus 305 ~-~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 380 (458)
+ ..+..+++|++|++++| .+..++ ..+..+++|+.|++++|+|+.+|..+..+++|++|++++|+++..+...+
T Consensus 209 ~~~~l~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHN--QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSS--CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CHHHhcCCCCCCEEECCCC--cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 6 67889999999999998 555665 46888999999999999999999889999999999999999998776544
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5e-26 Score=217.06 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=197.7
Q ss_pred eeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCC
Q 012694 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 152 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n 229 (458)
-++++++++.++.+|..+ .++|++|++++|.++.++ ..+..+++|++|++++|.++.+ +..+.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 368999999999998754 469999999999999887 4689999999999999999987 678999999999999999
Q ss_pred C-CCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCccc
Q 012694 230 K-LNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR 306 (458)
Q Consensus 230 ~-l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~ 306 (458)
. ++.+ +..+..+++|++|++++|.++.++...+..+++|++|++++|.++.++. .+..+++|++|++++|.+++++.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 8877 6788999999999999999999988777789999999999999998875 47889999999999999999875
Q ss_pred -cccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694 307 -AIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 307 -~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
.+..+++|++|++++| .+..+ |..+..+++|+.|++++|+|+.++ ..+..+++|++|++++|++.+.
T Consensus 171 ~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQN--RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHhcCccccCEEECCCC--cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 5899999999999998 45555 678899999999999999999887 4689999999999999999864
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.5e-26 Score=228.02 Aligned_cols=225 Identities=26% Similarity=0.314 Sum_probs=148.5
Q ss_pred CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCchh-hcCCCCccEEE
Q 012694 149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLN 225 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~ 225 (458)
+++|++|++++|.++.++. .|..+++|++|++++|.++.++ ..++++++|++|++++|.++.+|.. +.++++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 4667888888888776654 6777888888888888877764 4477788888888888888877655 47778888888
Q ss_pred eeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccC-------------------------------------CC
Q 012694 226 VSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGL-------------------------------------LN 267 (458)
Q Consensus 226 l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l-------------------------------------~~ 267 (458)
+++|+++.++ ..+..+++|++|++++|.++.++...+..+ ++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 8888777664 457777888888888887776543322111 12
Q ss_pred CCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccC
Q 012694 268 LERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN 346 (458)
Q Consensus 268 L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~ 346 (458)
|+.|++++|.++.. ..+..+++|++|++++|.++++ |..+..+++|++|++++| .+..++..+..+++|++|++++
T Consensus 228 L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 228 LTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS--CCCEEECSSSCCTTCCEEECCS
T ss_pred ccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC--cCcccCcccCCCCCCCEEECCC
Confidence 33333333333332 2345556666666666666664 455666666777777665 4555655556666777777777
Q ss_pred CCCCCCchhhhCCCCCcEEECcCCCCCCCc
Q 012694 347 NQIRALPDTFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 347 n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
|+++.+|..+..+++|++|++++|+++..+
T Consensus 305 n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 305 NHLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp SCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CcceecCccccccCcCCEEECCCCccceeC
Confidence 777766666666677777777777666554
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.5e-26 Score=231.19 Aligned_cols=223 Identities=25% Similarity=0.441 Sum_probs=200.3
Q ss_pred CceeEEEecCCCCCcc-chhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEe
Q 012694 150 VVVETVDLADRQLKLL-PEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNV 226 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l 226 (458)
++++.|++++|.++.+ +..|..+++|++|++++|.|+.++ ..|.++++|++|++++|.++.++. .+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5799999999999977 458999999999999999999886 679999999999999999999865 5888999999999
Q ss_pred eCCCCCCCch-hhcCCCCCcEEEcCC-CCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694 227 SGNKLNTLPE-SIARCSSLVELDASF-NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 227 ~~n~l~~l~~-~l~~l~~L~~L~l~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l 304 (458)
++|+++.++. .+.++++|++|++++ +.++.++...+.++++|+.|++++|.++.+| .+..+++|++|++++|.++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCccc
Confidence 9999998864 688899999999998 5688888888889999999999999999986 588899999999999999996
Q ss_pred -cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694 305 -PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 305 -~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
|..+..+++|+.|++++| .+..+ +..+..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|++.+.
T Consensus 234 ~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNS--QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CGGGGTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CcccccCccCCCEEEeCCC--cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 578999999999999998 45555 566889999999999999999886 4678899999999999999865
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6e-26 Score=230.10 Aligned_cols=223 Identities=27% Similarity=0.452 Sum_probs=200.5
Q ss_pred CceeEEEecCCCCCccc-hhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEe
Q 012694 150 VVVETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNV 226 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l 226 (458)
++++.|++++|.++.++ ..|..+++|++|++++|.++.++ ..|.++++|++|++++|.++.++. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57999999999999776 58999999999999999999886 679999999999999999999865 6899999999999
Q ss_pred eCCCCCCCch-hhcCCCCCcEEEcCC-CCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694 227 SGNKLNTLPE-SIARCSSLVELDASF-NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 227 ~~n~l~~l~~-~l~~l~~L~~L~l~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l 304 (458)
++|+++.++. .+.++++|++|++++ +.++.++...+.++++|+.|++++|.++.+| .+..+++|++|++++|.++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCcc
Confidence 9999998864 688899999999998 5678888888889999999999999999997 488999999999999999996
Q ss_pred -cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694 305 -PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 305 -~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
+..+..+++|+.|++++| .+..+ +..+..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|++.+.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQS--QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTTTTTCTTCCEEECTTC--CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred ChhhhccCccCCEEECCCC--ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 578999999999999998 55555 456889999999999999999886 4678899999999999999764
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=4.4e-27 Score=227.59 Aligned_cols=227 Identities=23% Similarity=0.262 Sum_probs=199.9
Q ss_pred hccCCCceeEEEecC-CCCC-ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCC
Q 012694 145 EAESGVVVETVDLAD-RQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLN 220 (458)
Q Consensus 145 ~~~~~~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~ 220 (458)
.+...++|++|++++ |.+. .+|..|..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 344578999999995 8777 78889999999999999999998 78888999999999999999998 67889999999
Q ss_pred ccEEEeeCCCCC-CCchhhcCCC-CCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCccccCCCCCcEEEcc
Q 012694 221 LKVLNVSGNKLN-TLPESIARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDAH 297 (458)
Q Consensus 221 L~~L~l~~n~l~-~l~~~l~~l~-~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~ 297 (458)
|++|++++|+++ .+|..+..++ +|++|++++|.++......+..+. |+.|++++|.++ ..+..+..+++|++|+++
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 999999999998 8899999998 999999999999854444444666 999999999998 566778999999999999
Q ss_pred cCCCCCccccccCCCcccEEEccCCCCCCC-ccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCC-CCC
Q 012694 298 FNELHGLPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNP-LVI 374 (458)
Q Consensus 298 ~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~-i~~ 374 (458)
+|.+++.+..+..+++|++|++++| .+. .+|..+..+++|+.|++++|+++ .+|.. ..+++|+.+++++|+ +.+
T Consensus 230 ~N~l~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 230 KNSLAFDLGKVGLSKNLNGLDLRNN--RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp SSEECCBGGGCCCCTTCCEEECCSS--CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCceeeecCcccccCCCCEEECcCC--cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9999986666889999999999998 444 78889999999999999999998 66654 889999999999998 444
Q ss_pred C
Q 012694 375 P 375 (458)
Q Consensus 375 ~ 375 (458)
.
T Consensus 307 ~ 307 (313)
T 1ogq_A 307 S 307 (313)
T ss_dssp T
T ss_pred C
Confidence 3
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1e-25 Score=244.12 Aligned_cols=227 Identities=20% Similarity=0.287 Sum_probs=131.8
Q ss_pred CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcc-cceeeeecCCCCCCchhhcCCCC--ccEEE
Q 012694 149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQK-LEELDVSSNLLQSLPDSIGLLLN--LKVLN 225 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~-L~~L~L~~n~l~~l~~~l~~l~~--L~~L~ 225 (458)
+++|+.|++++|.++.+| .|..+++|+.|++++|.++.+|..+.++++ |++|++++|.++.+|..+..+.. |+.|+
T Consensus 572 L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEE
T ss_pred CCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEE
Confidence 344555555555544444 444445555555555555544444445544 55555555555444443333322 44444
Q ss_pred eeCCCCCCCch----hhc--CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCC--------CCC
Q 012694 226 VSGNKLNTLPE----SIA--RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEM--------RSL 291 (458)
Q Consensus 226 l~~n~l~~l~~----~l~--~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l--------~~L 291 (458)
+++|+++..++ .+. .+++|+.|++++|.++.++...+..+++|+.|++++|.++.+|..+... ++|
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc
Confidence 44444332111 111 2235666666666666666666666777777777777777666544332 267
Q ss_pred cEEEcccCCCCCcccccc--CCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccC------CCCC-CCchhhhCCCCC
Q 012694 292 KYLDAHFNELHGLPRAIG--KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN------NQIR-ALPDTFFRLENL 362 (458)
Q Consensus 292 ~~L~l~~n~l~~l~~~l~--~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~------n~l~-~l~~~l~~l~~L 362 (458)
++|++++|.++.+|..+. .+++|+.|+|++| .+..+|..+..+++|+.|+|++ |++. .+|..+..+++|
T Consensus 731 ~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N--~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN--CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS--CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cEEECCCCCCccchHHhhhccCCCcCEEEeCCC--CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 777777777777776665 7777777777776 4455676777777777777765 4444 556677777777
Q ss_pred cEEECcCCCCCCCcHH
Q 012694 363 TKLNLDQNPLVIPPME 378 (458)
Q Consensus 363 ~~L~L~~n~i~~~~~~ 378 (458)
+.|+|++|++..+|..
T Consensus 809 ~~L~Ls~N~L~~Ip~~ 824 (876)
T 4ecn_A 809 IQLQIGSNDIRKVDEK 824 (876)
T ss_dssp CEEECCSSCCCBCCSC
T ss_pred CEEECCCCCCCccCHh
Confidence 7777777777655543
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=9e-26 Score=225.06 Aligned_cols=221 Identities=24% Similarity=0.284 Sum_probs=189.8
Q ss_pred ccCCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccchh-hcCCcccceeeeecCCCCCC-chhhcCCCCcc
Q 012694 146 AESGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSL-PDSIGLLLNLK 222 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~ 222 (458)
+...++|++|++++|.++.++. .|..+++|++|++++|.++.+|.. ++++++|++|++++|.++.+ +..+..+++|+
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 3467899999999999997754 689999999999999999999866 68999999999999999987 45689999999
Q ss_pred EEEeeCCCCCCCchhhcCCC----------------------------------------CCcEEEcCCCCCCcCCchhh
Q 012694 223 VLNVSGNKLNTLPESIARCS----------------------------------------SLVELDASFNNLVCLPTNIG 262 (458)
Q Consensus 223 ~L~l~~n~l~~l~~~l~~l~----------------------------------------~L~~L~l~~n~l~~l~~~~~ 262 (458)
+|++++|+++.++ +..++ +|+.|++++|.++..+ .+
T Consensus 169 ~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~--~l 244 (390)
T 3o6n_A 169 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WL 244 (390)
T ss_dssp EEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG--GG
T ss_pred EEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH--HH
Confidence 9999999988653 22222 4555555555555542 34
Q ss_pred ccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCE
Q 012694 263 YGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRE 341 (458)
Q Consensus 263 ~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~ 341 (458)
..+++|++|++++|.++.+ +..+..+++|++|++++|.+++++..+..+++|++|++++| .+..+|..+..+++|+.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERNQPQFDRLEN 322 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGGHHHHTTCSE
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC--cceecCccccccCcCCE
Confidence 5789999999999999965 67899999999999999999999888889999999999998 67788888889999999
Q ss_pred EeccCCCCCCCchhhhCCCCCcEEECcCCCCCC
Q 012694 342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374 (458)
Q Consensus 342 L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~ 374 (458)
|++++|+|+.++ +..+++|++|++++|++.+
T Consensus 323 L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 323 LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred EECCCCccceeC--chhhccCCEEEcCCCCccc
Confidence 999999999885 7889999999999999874
No 15
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.9e-26 Score=222.28 Aligned_cols=217 Identities=22% Similarity=0.268 Sum_probs=193.3
Q ss_pred CCCceeEEEecCCCCCccc-hhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694 148 SGVVVETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV 226 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l 226 (458)
..++|++|++++|.++.++ ..|..+++|++|++++|.++.+++ +..+++|++|++++|.++.++. .++|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 3568999999999999776 589999999999999999997765 9999999999999999987753 489999999
Q ss_pred eCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccc-cCCCCCcEEEcccCCCCCc
Q 012694 227 SGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSI-CEMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 227 ~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l-~~l~~L~~L~l~~n~l~~l 304 (458)
++|+++.++. ..+++|++|++++|.++.++...+..+++|+.|++++|.++.++ ..+ ..+++|++|++++|.++++
T Consensus 107 ~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp CSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 9999998754 34789999999999999998877778999999999999999653 444 4789999999999999998
Q ss_pred cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCC
Q 012694 305 PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374 (458)
Q Consensus 305 ~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~ 374 (458)
+. ...+++|++|++++| .+..+|..+..+++|+.|++++|+|+.+|..+..+++|+.|++++|++.+
T Consensus 185 ~~-~~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 185 KG-QVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp EC-CCCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH
T ss_pred cc-ccccccCCEEECCCC--cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccC
Confidence 65 445899999999998 67788888999999999999999999999899999999999999999983
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-25 Score=236.06 Aligned_cols=225 Identities=26% Similarity=0.312 Sum_probs=166.5
Q ss_pred CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCchh-hcCCCCccEEE
Q 012694 149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLN 225 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~ 225 (458)
+++|++|++++|.++.++. .|..+++|++|++++|.++.+++ .|+++++|++|++++|.++.+|.. ++++++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 5778999999998887765 78888999999999998887764 478899999999999998888765 58889999999
Q ss_pred eeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccC-------------------------------------CC
Q 012694 226 VSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGL-------------------------------------LN 267 (458)
Q Consensus 226 l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l-------------------------------------~~ 267 (458)
+++|.++.++ ..+..+++|++|++++|.++.++...+..+ ++
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 9999888764 468888999999999988887653322111 12
Q ss_pred CCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccC
Q 012694 268 LERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN 346 (458)
Q Consensus 268 L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~ 346 (458)
|+.|++++|.++.. ..+..+++|++|++++|.++++ |..++.+++|+.|+|++| .+..+|..+..+++|+.|+|++
T Consensus 234 L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 234 LTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS--CCCEEECSSSCCTTCCEEECCS
T ss_pred CCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC--CCCCCCcccccCCCCcEEECCC
Confidence 33333344443332 3456677777777777777774 556777777777777776 5566666666777788888888
Q ss_pred CCCCCCchhhhCCCCCcEEECcCCCCCCCc
Q 012694 347 NQIRALPDTFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 347 n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
|.++.+|..+..+++|++|+|++|+++..+
T Consensus 311 N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 311 NHLLHVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp SCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCCccCcccccCCCCCEEECCCCCCCCcC
Confidence 877777777777777777777777776654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5.1e-26 Score=241.05 Aligned_cols=227 Identities=21% Similarity=0.289 Sum_probs=137.7
Q ss_pred CCCceeEEEecCCCCC-ccchhhCCCCCCcEEEcccCCCCccchhhcCCcc-cceeeeecCCCCCCchhhcCCC--CccE
Q 012694 148 SGVVVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQK-LEELDVSSNLLQSLPDSIGLLL--NLKV 223 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~-L~~L~L~~n~l~~l~~~l~~l~--~L~~ 223 (458)
.+++|+.|++++|.++ .+| .+..+++|++|++++|.++.+|..+.++++ |++|++++|.++.+|..+..+. +|++
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEE
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCE
Confidence 4455666666666666 555 555556666666666666656655666666 6666666666666665554433 5666
Q ss_pred EEeeCCCCCC-Cchhhc-------CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccC--------
Q 012694 224 LNVSGNKLNT-LPESIA-------RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-------- 287 (458)
Q Consensus 224 L~l~~n~l~~-l~~~l~-------~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~-------- 287 (458)
|++++|.++. +|..+. .+++|++|++++|.++.++...+..+++|+.|++++|.++.+|.....
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 6666665552 333444 455666666666666666666665566677777777666666543322
Q ss_pred CCCCcEEEcccCCCCCcccccc--CCCcccEEEccCCCCCCCccchhhcCCCCCCEEecc------CCCCC-CCchhhhC
Q 012694 288 MRSLKYLDAHFNELHGLPRAIG--KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLS------NNQIR-ALPDTFFR 358 (458)
Q Consensus 288 l~~L~~L~l~~n~l~~l~~~l~--~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~------~n~l~-~l~~~l~~ 358 (458)
+++|++|++++|.++.+|..+. .+++|+.|+|++| .+..+|..+..+++|+.|+++ +|++. .+|..+..
T Consensus 487 l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS--CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC--CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 2266667777766666666555 6666777777666 444566666666666666663 34333 45666666
Q ss_pred CCCCcEEECcCCCCCCCcH
Q 012694 359 LENLTKLNLDQNPLVIPPM 377 (458)
Q Consensus 359 l~~L~~L~L~~n~i~~~~~ 377 (458)
+++|++|+|++|+++.+|.
T Consensus 565 l~~L~~L~Ls~N~l~~ip~ 583 (636)
T 4eco_A 565 CPSLTQLQIGSNDIRKVNE 583 (636)
T ss_dssp CSSCCEEECCSSCCCBCCS
T ss_pred CCCCCEEECCCCcCCccCH
Confidence 6666666666666655544
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=9.8e-26 Score=217.22 Aligned_cols=223 Identities=25% Similarity=0.290 Sum_probs=198.0
Q ss_pred eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh-hcCCcccceeeeecCCCCCC---chhhcCCCCccEEEeeC
Q 012694 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSL---PDSIGLLLNLKVLNVSG 228 (458)
Q Consensus 153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~L~~n~l~~l---~~~l~~l~~L~~L~l~~ 228 (458)
+.++++++.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|.++.+ +..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 478999999999997554 6999999999999999865 79999999999999999865 56778899999999999
Q ss_pred CCCCCCchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCC--c
Q 012694 229 NKLNTLPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHG--L 304 (458)
Q Consensus 229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~--l 304 (458)
|.++.+|..+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.+ +..+..+++|++|++++|.+++ +
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 9999999889999999999999999998876 5666899999999999999854 5668889999999999999987 7
Q ss_pred cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCcHHH
Q 012694 305 PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPPMEI 379 (458)
Q Consensus 305 ~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~~~~ 379 (458)
|..+..+++|++|++++| .+..+ |..+..+++|+.|++++|+++.++ ..+..+++|++|++++|+++......
T Consensus 168 ~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQC--QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp CSCCTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred hhHHhhCcCCCEEECCCC--CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 888999999999999998 55666 567889999999999999999885 47889999999999999998765543
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=5.5e-25 Score=214.34 Aligned_cols=222 Identities=23% Similarity=0.346 Sum_probs=196.1
Q ss_pred ccCCCceeEEEecCCCCCcc-chhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCc-hhhcCCCCccE
Q 012694 146 AESGVVVETVDLADRQLKLL-PEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKV 223 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~ 223 (458)
+..+++|++|++++|.++.+ |..|..+++|++|++++|.++.+|..+. ++|++|++++|.++.++ ..+.++++|++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccE
Confidence 34578899999999999977 7789999999999999999999987654 79999999999999885 46899999999
Q ss_pred EEeeCCCCC---CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccC
Q 012694 224 LNVSGNKLN---TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFN 299 (458)
Q Consensus 224 L~l~~n~l~---~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n 299 (458)
|++++|.++ ..+..+.++++|++|++++|.++.++.... ++|+.|++++|.++.+ +..+..+++|++|++++|
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 999999987 345678899999999999999999987654 8999999999999976 578899999999999999
Q ss_pred CCCCccc-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCch-hhh------CCCCCcEEECcCCC
Q 012694 300 ELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD-TFF------RLENLTKLNLDQNP 371 (458)
Q Consensus 300 ~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~------~l~~L~~L~L~~n~ 371 (458)
.+++++. .+..+++|++|++++| .+..+|..+..+++|++|++++|+|+.++. .+. ..+.|+.|++++|+
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNN--KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSS--CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cCceeChhhccCCCCCCEEECCCC--cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 9999764 7899999999999998 677999999999999999999999998863 343 24789999999999
Q ss_pred CCC
Q 012694 372 LVI 374 (458)
Q Consensus 372 i~~ 374 (458)
+..
T Consensus 305 ~~~ 307 (330)
T 1xku_A 305 VQY 307 (330)
T ss_dssp SCG
T ss_pred ccc
Confidence 874
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.4e-24 Score=212.83 Aligned_cols=219 Identities=21% Similarity=0.340 Sum_probs=137.4
Q ss_pred ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694 146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN 225 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 225 (458)
+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+.++++|++|++++|.++.++. +..+++|++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence 3446778888888888777765 777788888888888777774 57777888888888887777755 66777777777
Q ss_pred eeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc
Q 012694 226 VSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP 305 (458)
Q Consensus 226 l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~ 305 (458)
+++|.....+..+..+++|++|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+++++
T Consensus 139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCc
Confidence 7777433333446666777777777776666554 3356667777776666665543 555555555555555555544
Q ss_pred ccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694 306 RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 306 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
. +..+++|++|++++| .+..++. +..+++|++|++++|.++.+ +.+..+++|++|++++|.++..
T Consensus 216 ~-~~~~~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~ 280 (347)
T 4fmz_A 216 P-VANMTRLNSLKIGNN--KITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI 280 (347)
T ss_dssp G-GGGCTTCCEEECCSS--CCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC
T ss_pred h-hhcCCcCCEEEccCC--ccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC
Confidence 3 455555555555554 3344433 45555555555555555554 2445555555555555555543
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.7e-25 Score=242.16 Aligned_cols=227 Identities=30% Similarity=0.420 Sum_probs=151.0
Q ss_pred CCCceeEEEecCCCCC-ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEE
Q 012694 148 SGVVVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVL 224 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L 224 (458)
.+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 3456666666666665 45556666666666666666666 45666666777777777777666 346666677777777
Q ss_pred EeeCCCCC-CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCcc------------------
Q 012694 225 NVSGNKLN-TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPS------------------ 284 (458)
Q Consensus 225 ~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~------------------ 284 (458)
++++|+++ .+|..++.+++|++|++++|.++......+..+++|+.|++++|.++ .+|..
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 77777666 55666677777777777777766333333336777777777777654 33322
Q ss_pred ----------------------------------------------------ccCCCCCcEEEcccCCCCC-ccccccCC
Q 012694 285 ----------------------------------------------------ICEMRSLKYLDAHFNELHG-LPRAIGKL 311 (458)
Q Consensus 285 ----------------------------------------------------l~~l~~L~~L~l~~n~l~~-l~~~l~~l 311 (458)
+..+++|++|++++|.+++ +|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 2234567777777777775 66777777
Q ss_pred CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCC
Q 012694 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 312 ~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
++|+.|+|++|.. .+.+|..++.+++|+.|||++|+++ .+|..+..+++|++|++++|++++.
T Consensus 656 ~~L~~L~Ls~N~l-~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 656 PYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp TTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred ccCCEEeCcCCcc-CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 7777777777722 2467777777777777777777777 6677777777777777777777653
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=3.2e-25 Score=240.23 Aligned_cols=231 Identities=20% Similarity=0.291 Sum_probs=202.0
Q ss_pred hccCCCceeEEEecCCCCCccchhhCCCCC-CcEEEcccCCCCccchhhcCCcc--cceeeeecCCCCCCch----hhc-
Q 012694 145 EAESGVVVETVDLADRQLKLLPEAFGRLRG-LVSLNLSRNLLEAMPDSIAGLQK--LEELDVSSNLLQSLPD----SIG- 216 (458)
Q Consensus 145 ~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~-L~~L~l~~n~i~~l~~~l~~l~~--L~~L~L~~n~l~~l~~----~l~- 216 (458)
.+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.+|..+..+.. |++|++++|.++..+. .+.
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 455678999999999999999999999999 99999999999999987777654 9999999999875422 232
Q ss_pred -CCCCccEEEeeCCCCCCCchhhc-CCCCCcEEEcCCCCCCcCCchhhccC-------CCCCEEeccCCcCccCCcccc-
Q 012694 217 -LLLNLKVLNVSGNKLNTLPESIA-RCSSLVELDASFNNLVCLPTNIGYGL-------LNLERLSIKLNKLRTFPPSIC- 286 (458)
Q Consensus 217 -~l~~L~~L~l~~n~l~~l~~~l~-~l~~L~~L~l~~n~l~~l~~~~~~~l-------~~L~~L~L~~n~l~~l~~~l~- 286 (458)
.+++|+.|++++|.++.+|..+. .+++|+.|++++|.++.++...+... ++|+.|++++|.++.+|..+.
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 45689999999999999987765 79999999999999999998776533 389999999999999999887
Q ss_pred -CCCCCcEEEcccCCCCCccccccCCCcccEEEccCCC-----CCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCC
Q 012694 287 -EMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF-----NDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLE 360 (458)
Q Consensus 287 -~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~-----~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~ 360 (458)
.+++|+.|++++|.++++|..+..+++|+.|+|++|. .-...+|..++.+++|+.|+|++|+|+.+|..+. +
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~ 827 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--P 827 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--S
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--C
Confidence 9999999999999999999999999999999998742 2245788899999999999999999999987765 6
Q ss_pred CCcEEECcCCCCCCCcH
Q 012694 361 NLTKLNLDQNPLVIPPM 377 (458)
Q Consensus 361 ~L~~L~L~~n~i~~~~~ 377 (458)
+|+.|+|++|++.....
T Consensus 828 ~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 828 QLYILDIADNPNISIDV 844 (876)
T ss_dssp SSCEEECCSCTTCEEEC
T ss_pred CCCEEECCCCCCCccCh
Confidence 99999999999986654
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=3.5e-24 Score=209.97 Aligned_cols=221 Identities=22% Similarity=0.348 Sum_probs=161.8
Q ss_pred ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694 146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN 225 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 225 (458)
+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.....+..+..+++|++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 161 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEE
T ss_pred hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEE
Confidence 446688888888888888775 57888888888888888888765 7888888888888885443334477888888888
Q ss_pred eeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc
Q 012694 226 VSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP 305 (458)
Q Consensus 226 l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~ 305 (458)
+++|.+..++. +..+++|++|++++|.++.++. +..+++|+.|++++|.++.++. +..+++|++|++++|.+++++
T Consensus 162 l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 162 VTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp CCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred ecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCc
Confidence 88888777654 7778888888888888777665 3467777777777777776644 666777777777777777766
Q ss_pred ccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcH
Q 012694 306 RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPM 377 (458)
Q Consensus 306 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~ 377 (458)
. +..+++|++|++++| .+..+ +.+..+++|+.|++++|+++.++ .+..+++|++|++++|+++..++
T Consensus 238 ~-~~~l~~L~~L~l~~n--~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 238 P-LANLSQLTWLEIGTN--QISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp G-GTTCTTCCEEECCSS--CCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred c-hhcCCCCCEEECCCC--ccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcCh
Confidence 5 667777777777776 44454 34666777777777777777663 56667777777777777765443
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=7.2e-26 Score=239.90 Aligned_cols=230 Identities=21% Similarity=0.309 Sum_probs=178.5
Q ss_pred ccCCCceeEEEecCCCCCc------------------cchhhC--CCCCCcEEEcccCCCC-ccchhhcCCcccceeeee
Q 012694 146 AESGVVVETVDLADRQLKL------------------LPEAFG--RLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVS 204 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~------------------l~~~~~--~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~ 204 (458)
+..+++|++|++++|.++. +|..+. .+++|++|++++|.+. .+|..++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4456889999999999987 888888 9999999999999765 678889999999999999
Q ss_pred cCC-CCC--CchhhcCC------CCccEEEeeCCCCCCCch--hhcCCCCCcEEEcCCCCCC-cCCchhhccCCCCCEEe
Q 012694 205 SNL-LQS--LPDSIGLL------LNLKVLNVSGNKLNTLPE--SIARCSSLVELDASFNNLV-CLPTNIGYGLLNLERLS 272 (458)
Q Consensus 205 ~n~-l~~--l~~~l~~l------~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~-~l~~~~~~~l~~L~~L~ 272 (458)
+|. ++. +|..++.+ ++|++|++++|+++.+|. .++++++|++|++++|.++ .+| .+..+++|+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEE
Confidence 998 884 78877776 899999999999998888 8899999999999999988 777 444788888888
Q ss_pred ccCCcCccCCccccCCCC-CcEEEcccCCCCCccccccCCC--cccEEEccCCCCCCCccchhhc-------CCCCCCEE
Q 012694 273 IKLNKLRTFPPSICEMRS-LKYLDAHFNELHGLPRAIGKLT--RLEVLNLSSNFNDLTELPETIG-------DLINLREL 342 (458)
Q Consensus 273 L~~n~l~~l~~~l~~l~~-L~~L~l~~n~l~~l~~~l~~l~--~L~~L~L~~n~~~~~~l~~~l~-------~l~~L~~L 342 (458)
+++|.++.+|..+..+++ |++|++++|.++.+|..+..++ +|++|++++|... ..+|..+. .+++|+.|
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC-CcchhhhcccccccccCCCCCEE
Confidence 888888888888888888 8888888888888877666544 7777777776322 23344444 55567777
Q ss_pred eccCCCCCCCchh-hhCCCCCcEEECcCCCCCCCcHH
Q 012694 343 DLSNNQIRALPDT-FFRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 343 ~L~~n~l~~l~~~-l~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
++++|+|+.+|.. +..+++|++|++++|.++..+..
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 7777777766543 33466666666666666655443
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=5.9e-25 Score=223.47 Aligned_cols=131 Identities=30% Similarity=0.419 Sum_probs=81.6
Q ss_pred CCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEcc
Q 012694 243 SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLS 320 (458)
Q Consensus 243 ~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~ 320 (458)
+|++|++++|.++.+....+..+++|+.|++++|.++.+ +..+..+++|++|++++|.++++ +..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 344444444444444444444566677777777766654 34566667777777777777664 3456667777777777
Q ss_pred CCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCch-hhhCCCCCcEEECcCCCCCCC
Q 012694 321 SNFNDLTEL-PETIGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 321 ~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~~ 375 (458)
+| .+..+ |..+..+++|++|++++|+|+.+|. .+..+++|++|++++|++++.
T Consensus 356 ~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 356 YN--HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp SS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CC--cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 76 34444 4556667777777777777776653 456677777777777777654
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-25 Score=230.53 Aligned_cols=218 Identities=22% Similarity=0.255 Sum_probs=194.3
Q ss_pred CCCceeEEEecCCCCCccc-hhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694 148 SGVVVETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV 226 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l 226 (458)
..++|++|++++|.++.++ ..|..+++|++|++++|.++.+++ ++.+++|++|++++|.++.++. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3568999999999999775 589999999999999999997765 9999999999999999988764 389999999
Q ss_pred eCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc-CCcccc-CCCCCcEEEcccCCCCCc
Q 012694 227 SGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT-FPPSIC-EMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 227 ~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-l~~~l~-~l~~L~~L~l~~n~l~~l 304 (458)
++|.++.++. ..+++|+.|++++|.++.++...+..+++|+.|++++|.++. .|..+. .+++|++|++++|.++++
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 9999998754 357899999999999999877777789999999999999996 455565 789999999999999998
Q ss_pred cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694 305 PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 305 ~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
+. ...+++|+.|+|++| .+..+|..+..+++|+.|++++|.|+.+|..+..+++|+.|++++|++.+.
T Consensus 185 ~~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp EC-CCCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cc-cccCCCCCEEECCCC--CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 65 446999999999998 677888889999999999999999999999999999999999999999843
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.4e-25 Score=232.30 Aligned_cols=222 Identities=24% Similarity=0.281 Sum_probs=189.6
Q ss_pred ccCCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccchh-hcCCcccceeeeecCCCCCCc-hhhcCCCCcc
Q 012694 146 AESGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLP-DSIGLLLNLK 222 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~ 222 (458)
+..+++|+.|++++|.++.++. .|+.+++|++|++++|.++.+|.. |+++++|++|++++|.++.++ ..+.++++|+
T Consensus 95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 3467899999999999998765 679999999999999999999865 699999999999999999874 5789999999
Q ss_pred EEEeeCCCCCCCchhhcCCC----------------------------------------CCcEEEcCCCCCCcCCchhh
Q 012694 223 VLNVSGNKLNTLPESIARCS----------------------------------------SLVELDASFNNLVCLPTNIG 262 (458)
Q Consensus 223 ~L~l~~n~l~~l~~~l~~l~----------------------------------------~L~~L~l~~n~l~~l~~~~~ 262 (458)
+|++++|.++.++ +..++ +|+.|++++|.++.. ..+
T Consensus 175 ~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l 250 (597)
T 3oja_B 175 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWL 250 (597)
T ss_dssp EEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGG
T ss_pred EEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhh
Confidence 9999999988663 22222 344445555555443 234
Q ss_pred ccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCE
Q 012694 263 YGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRE 341 (458)
Q Consensus 263 ~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~ 341 (458)
..+++|+.|++++|.++.+ |..+..+++|++|++++|.++++|..+..+++|+.|+|++| .+..+|..++.+++|+.
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERNQPQFDRLEN 328 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGGHHHHTTCSE
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC--CCCccCcccccCCCCCE
Confidence 5899999999999999965 67899999999999999999999988888999999999998 66789988999999999
Q ss_pred EeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694 342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 342 L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
|++++|.|+.++ +..+++|+.|++++|++.+.
T Consensus 329 L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 329 LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 999999999885 77889999999999998743
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=7.2e-25 Score=222.83 Aligned_cols=112 Identities=33% Similarity=0.406 Sum_probs=87.6
Q ss_pred CCCEEeccCCcCcc-CCccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEe
Q 012694 267 NLERLSIKLNKLRT-FPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELD 343 (458)
Q Consensus 267 ~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~ 343 (458)
+|+.|++++|.++. .+..+..+++|++|++++|.++++ +..+..+++|++|++++| .+..+ +..++.+++|++|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN--FLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCEECGGGGTTCTTCCEEE
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC--ccCCcChhHhcCcccCCEEE
Confidence 44455555555543 345577788899999999988886 457888899999999988 45555 56788899999999
Q ss_pred ccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694 344 LSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIV 380 (458)
Q Consensus 344 L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 380 (458)
+++|+|+.+ |..+..+++|++|++++|+++..+...+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 999999977 6788999999999999999998776543
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=6e-25 Score=222.71 Aligned_cols=224 Identities=26% Similarity=0.431 Sum_probs=200.7
Q ss_pred eeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeCC
Q 012694 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 152 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n 229 (458)
...+++.+..++.+|..+. ++++.|++++|.|+.++ ..|.++++|++|++++|.++.++ ..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 5689999999999998665 68999999999999886 67999999999999999999884 67899999999999999
Q ss_pred CCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC-CcCccCCc-cccCCCCCcEEEcccCCCCCccc
Q 012694 230 KLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL-NKLRTFPP-SICEMRSLKYLDAHFNELHGLPR 306 (458)
Q Consensus 230 ~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~ 306 (458)
+++.++. .+..+++|++|++++|.++.++...+..+++|+.|++++ +.+..++. .+.++++|++|++++|.++.+|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 9998875 688999999999999999999998888999999999998 56666664 68889999999999999999985
Q ss_pred cccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694 307 AIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIV 380 (458)
Q Consensus 307 ~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 380 (458)
+..+++|++|+|++| .+..+ |..+..+++|+.|++++|+|+.+ +..+..+++|++|+|++|+++..+...+
T Consensus 203 -~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGN--HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp -CTTCSSCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred -cCCCcccCEEECCCC--ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 889999999999998 55666 66789999999999999999977 4678999999999999999998876554
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=5.8e-25 Score=214.41 Aligned_cols=220 Identities=23% Similarity=0.351 Sum_probs=193.9
Q ss_pred ccCCCceeEEEecCCCCCcc-chhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch-hhcCCCCccE
Q 012694 146 AESGVVVETVDLADRQLKLL-PEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKV 223 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~ 223 (458)
+..+++|++|++++|.++.+ |..|..+++|++|++++|.++.+|..+. ++|++|++++|.++.++. .+.++++|++
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 34678899999999999977 6689999999999999999999987655 899999999999999865 5899999999
Q ss_pred EEeeCCCCCC---CchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccccCCCCCcEEEcccC
Q 012694 224 LNVSGNKLNT---LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFN 299 (458)
Q Consensus 224 L~l~~n~l~~---l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n 299 (458)
|++++|.++. .+..+..+ +|++|++++|.++.++.... ++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 152 L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 152 IEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp EECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred EECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 9999999973 35667777 99999999999999987654 78999999999999776 67899999999999999
Q ss_pred CCCCccc-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc-hhhhC------CCCCcEEECcCCC
Q 012694 300 ELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP-DTFFR------LENLTKLNLDQNP 371 (458)
Q Consensus 300 ~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~------l~~L~~L~L~~n~ 371 (458)
.+++++. .+..+++|++|++++| .+..+|..+..+++|+.|++++|+|+.++ ..+.. .+.|+.|++++|+
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNN--KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSS--CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCC--cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 9999764 7899999999999998 67799999999999999999999999885 34433 4679999999999
Q ss_pred CC
Q 012694 372 LV 373 (458)
Q Consensus 372 i~ 373 (458)
+.
T Consensus 306 ~~ 307 (332)
T 2ft3_A 306 VP 307 (332)
T ss_dssp SC
T ss_pred cc
Confidence 87
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=5.2e-26 Score=219.97 Aligned_cols=219 Identities=22% Similarity=0.251 Sum_probs=178.9
Q ss_pred eeEEEecCCCCC--ccchhhC-------CCCCCcEEEcccCCCC-ccchhh--cCCcccceeeeecCCCCCCchhhcCC-
Q 012694 152 VETVDLADRQLK--LLPEAFG-------RLRGLVSLNLSRNLLE-AMPDSI--AGLQKLEELDVSSNLLQSLPDSIGLL- 218 (458)
Q Consensus 152 L~~L~l~~~~l~--~l~~~~~-------~l~~L~~L~l~~n~i~-~l~~~l--~~l~~L~~L~L~~n~l~~l~~~l~~l- 218 (458)
++.|++++|.++ .+|..+. .+++|++|++++|.++ .+|..+ ..+++|++|++++|.++.+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 566677777664 3455444 6889999999999998 567665 88999999999999999887777766
Q ss_pred ----CCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcC---Cch-hhccCCCCCEEeccCCcCccCC---c-cc
Q 012694 219 ----LNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCL---PTN-IGYGLLNLERLSIKLNKLRTFP---P-SI 285 (458)
Q Consensus 219 ----~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l---~~~-~~~~l~~L~~L~L~~n~l~~l~---~-~l 285 (458)
++|++|++++|+++.++ ..+..+++|++|++++|.+... +.. .+..+++|++|++++|.++.++ . .+
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 89999999999999776 6888999999999999987542 222 2357899999999999998543 2 23
Q ss_pred cCCCCCcEEEcccCCCCCcc--ccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCc
Q 012694 286 CEMRSLKYLDAHFNELHGLP--RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLT 363 (458)
Q Consensus 286 ~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~ 363 (458)
..+++|++|++++|.+++.+ ..+..+++|++|++++| .+..+|..+. ++|++|++++|+|+.+|. +..+++|+
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT--GLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVG 299 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS--CCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEE
T ss_pred hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC--ccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCC
Confidence 57789999999999999854 45667899999999998 5668888776 899999999999999976 88999999
Q ss_pred EEECcCCCCCCC
Q 012694 364 KLNLDQNPLVIP 375 (458)
Q Consensus 364 ~L~L~~n~i~~~ 375 (458)
+|++++|++++.
T Consensus 300 ~L~L~~N~l~~~ 311 (312)
T 1wwl_A 300 NLSLKGNPFLDS 311 (312)
T ss_dssp EEECTTCTTTCC
T ss_pred EEeccCCCCCCC
Confidence 999999999864
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=7.2e-25 Score=222.91 Aligned_cols=225 Identities=26% Similarity=0.364 Sum_probs=200.1
Q ss_pred ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeC
Q 012694 151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSG 228 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~ 228 (458)
....+++++..++.+|..+. +++++|++++|.|+.+ +..|.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35689999999999997665 6999999999999987 467999999999999999999874 6889999999999999
Q ss_pred CCCCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC-CcCccCCc-cccCCCCCcEEEcccCCCCCcc
Q 012694 229 NKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL-NKLRTFPP-SICEMRSLKYLDAHFNELHGLP 305 (458)
Q Consensus 229 n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~ 305 (458)
|+++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++ +.+..++. .+..+++|++|++++|.++++|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 999988754 88899999999999999999998888999999999998 56777765 5888999999999999999997
Q ss_pred ccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694 306 RAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIV 380 (458)
Q Consensus 306 ~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 380 (458)
. +..+++|++|+|++| .+..+ |..+..+++|+.|++++|+|+.+ +..+..+++|++|+|++|+++..+...+
T Consensus 213 ~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 213 N-LTPLVGLEELEMSGN--HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp C-CTTCTTCCEEECTTS--CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred c-ccccccccEEECcCC--cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 5 889999999999998 55555 67789999999999999999977 5678999999999999999998876543
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=6.8e-25 Score=224.54 Aligned_cols=228 Identities=27% Similarity=0.377 Sum_probs=157.5
Q ss_pred CceeEEEecCCCCCccc-hhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEe
Q 012694 150 VVVETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNV 226 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l 226 (458)
+.++.|++++|.++.++ ..|..+++|++|++++|.++.+ |..|.++++|++|++++|.++.+|. .+.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46778888888887664 4677788888888888877766 5567788888888888888877764 4577788888888
Q ss_pred eCCCCCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCc
Q 012694 227 SGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 227 ~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l 304 (458)
++|+++.+ +..+..+++|++|++++|.++.+....+.++++|+.|++++|.++.++. .+..+++|+.|++++|.+..+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 88877754 4567777778888888877777766666677777777777777776654 466777777777777777665
Q ss_pred c-ccccCCCcccEEEccCCC----------------------CCCCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCC
Q 012694 305 P-RAIGKLTRLEVLNLSSNF----------------------NDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRL 359 (458)
Q Consensus 305 ~-~~l~~l~~L~~L~L~~n~----------------------~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l 359 (458)
+ ..+..+++|++|++++|. +.+..+| ..+..+++|+.|+|++|.|+.++ ..+..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 4 355566666666655541 1334444 24566667777777777666553 346666
Q ss_pred CCCcEEECcCCCCCCCcH
Q 012694 360 ENLTKLNLDQNPLVIPPM 377 (458)
Q Consensus 360 ~~L~~L~L~~n~i~~~~~ 377 (458)
++|++|+|++|.++....
T Consensus 272 ~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp TTCCEEECCSSCCSEECT
T ss_pred ccCCEEECCCCccceECH
Confidence 777777777776665433
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.9e-25 Score=207.73 Aligned_cols=219 Identities=27% Similarity=0.342 Sum_probs=190.6
Q ss_pred EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCC
Q 012694 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKL 231 (458)
Q Consensus 154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l 231 (458)
.+++.+..+..+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.++.++. .+.++++|++|++++|++
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 56778888888887664 589999999999998875 78999999999999999998754 789999999999999999
Q ss_pred CCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc--CCccccCCCCCcEEEcccCCCCCcc-cc
Q 012694 232 NTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT--FPPSICEMRSLKYLDAHFNELHGLP-RA 307 (458)
Q Consensus 232 ~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~l~~n~l~~l~-~~ 307 (458)
+.++ ..+.++++|++|++++|.++.++...+..+++|++|++++|.++. +|..+..+++|++|++++|.+++++ ..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 9775 578899999999999999999887667789999999999999986 6889999999999999999999975 45
Q ss_pred ccCCCccc----EEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCc
Q 012694 308 IGKLTRLE----VLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 308 l~~l~~L~----~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
+..+++|+ .|++++| .+..++.......+|+.|++++|+|+.+|. .+..+++|++|++++|++.+..
T Consensus 169 ~~~l~~L~~l~l~L~ls~n--~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLN--PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GHHHHTCTTCCEEEECCSS--CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred hhhhhhccccceeeecCCC--cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 66666666 8999998 667777766666799999999999999975 5688999999999999998653
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=222.97 Aligned_cols=225 Identities=26% Similarity=0.384 Sum_probs=127.3
Q ss_pred CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEE
Q 012694 149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLN 225 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~ 225 (458)
+++|++|++++|.++.+|. .|..+++|++|++++|.++.+ +..+.++++|++|++++|.++.+ +..+.++++|++|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 4555555555555555544 345555555555555555544 23455555555555555555544 33455555566666
Q ss_pred eeCCCCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCC------------------------CCEEeccCCcCcc
Q 012694 226 VSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLN------------------------LERLSIKLNKLRT 280 (458)
Q Consensus 226 l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~------------------------L~~L~L~~n~l~~ 280 (458)
+++|+++.++. .+..+++|+.|++++|.+..++...+..+++ |+.|++++|.++.
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 66555555542 3455555555555555555444433334443 4444444455555
Q ss_pred CC-ccccCCCCCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCch-hh
Q 012694 281 FP-PSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALPD-TF 356 (458)
Q Consensus 281 l~-~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l 356 (458)
++ ..+..+++|++|++++|.+++++ ..+..+++|+.|+|++| .+..+ |..+..+++|+.|++++|+|+.++. .+
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG--QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS--CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC--ccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 54 24555666666666666666644 34566666666666665 33333 4456667777777777777776653 45
Q ss_pred hCCCCCcEEECcCCCCCCC
Q 012694 357 FRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 357 ~~l~~L~~L~L~~n~i~~~ 375 (458)
..+++|++|++++|++.+.
T Consensus 317 ~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 317 HSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCGGGCCEEECCSSCEECS
T ss_pred CCCcccCEEEccCCCccCc
Confidence 6667777777777777654
No 36
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=9.5e-25 Score=236.29 Aligned_cols=229 Identities=28% Similarity=0.389 Sum_probs=195.0
Q ss_pred CCceeEEEecCCCCC-ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEEE
Q 012694 149 GVVVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLN 225 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~ 225 (458)
.++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 457888888888887 67788899999999999999887 66788999999999999999988 5688899999999999
Q ss_pred eeCCCCC-CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCccccCCCCCcEEEcccCCCCC
Q 012694 226 VSGNKLN-TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELHG 303 (458)
Q Consensus 226 l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~ 303 (458)
+++|+++ .+|..+.++++|++|++++|.++......+..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 9999988 67888999999999999999998544444458999999999999998 788889999999999999998764
Q ss_pred -cccc----------------------------------------------------------------------ccCCC
Q 012694 304 -LPRA----------------------------------------------------------------------IGKLT 312 (458)
Q Consensus 304 -l~~~----------------------------------------------------------------------l~~l~ 312 (458)
+|.. ++.++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 4432 33456
Q ss_pred cccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694 313 RLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 313 ~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
+|+.|++++|.. .+.+|..++.+++|+.|+|++|+++ .+|..++++++|+.|+|++|++++..+.
T Consensus 633 ~L~~LdLs~N~l-~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 633 SMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp CCCEEECCSSCC-BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred cccEEECcCCcc-cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 789999999832 3578999999999999999999998 7799999999999999999999865443
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.8e-24 Score=217.65 Aligned_cols=208 Identities=25% Similarity=0.336 Sum_probs=158.1
Q ss_pred CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694 149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG 228 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~ 228 (458)
+++|++|++++|.++.+| .+..+++|++|++++|.++.++ ++.+++|++|++++|.++.++ ++++++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 366888888888888776 5778888888888888888775 778888888888888888774 77788888888888
Q ss_pred CCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCC-cCccCCccccCCCCCcEEEcccCCCCCcccc
Q 012694 229 NKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN-KLRTFPPSICEMRSLKYLDAHFNELHGLPRA 307 (458)
Q Consensus 229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~ 307 (458)
|+++.++ ++.+++|++|++++|.++.++ ...+++|+.|++++| .+..+ .+..+++|++|++++|.++++|
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-- 186 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-- 186 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--
T ss_pred CcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--
Confidence 8888774 777888888888888888764 336777888888877 44444 4667777888888888877775
Q ss_pred ccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCc
Q 012694 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 308 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
+..+++|+.|++++| .+..+ .++.+++|+.|++++|+++.+| +..+++|++|++++|+++..+
T Consensus 187 l~~l~~L~~L~l~~N--~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTN--NITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CTTCTTCCEEECCSS--CCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred cccCCCCCEEECcCC--cCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 667777888888776 44454 2667777777788777777776 667777777777777777665
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=4.7e-25 Score=216.89 Aligned_cols=228 Identities=20% Similarity=0.230 Sum_probs=198.6
Q ss_pred CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEe
Q 012694 149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNV 226 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l 226 (458)
++.....+++++.++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.++.+ +..+.++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 3444558999999999998665 599999999999998875 799999999999999999987 467999999999999
Q ss_pred eCCCCCCCchh-hcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCC-cCccC-CccccCCCCCcEEEcccCCCC
Q 012694 227 SGNKLNTLPES-IARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLN-KLRTF-PPSICEMRSLKYLDAHFNELH 302 (458)
Q Consensus 227 ~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n-~l~~l-~~~l~~l~~L~~L~l~~n~l~ 302 (458)
++|+++.++.. +.++++|++|++++|.++.++. ..+..+++|++|++++| .++.+ +..+..+++|++|++++|.++
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 99999999866 8899999999999999999987 66778999999999999 57766 457889999999999999999
Q ss_pred Cc-cccccCCCcccEEEccCCCCCCCccchhh-cCCCCCCEEeccCCCCCCC----------------------------
Q 012694 303 GL-PRAIGKLTRLEVLNLSSNFNDLTELPETI-GDLINLRELDLSNNQIRAL---------------------------- 352 (458)
Q Consensus 303 ~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l-~~l~~L~~L~L~~n~l~~l---------------------------- 352 (458)
++ |..+..+++|++|++++| .+..+|..+ ..+++|+.|++++|+++.+
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMK--QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECS--CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred ccCHHHHhccccCCeecCCCC--ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 95 678999999999999998 567777654 4589999999999998863
Q ss_pred ----chhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694 353 ----PDTFFRLENLTKLNLDQNPLVIPPMEIV 380 (458)
Q Consensus 353 ----~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 380 (458)
|..+..+++|++|++++|+++..+..++
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 4457889999999999999998876543
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=7.3e-24 Score=216.32 Aligned_cols=220 Identities=25% Similarity=0.347 Sum_probs=124.3
Q ss_pred CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694 149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG 228 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~ 228 (458)
+++|++|++++|.++.++. +..+++|++|++++|.++.++. ++++++|++|++++|.++.++. +.++++|++|++++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSS 143 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCC
Confidence 4555666666665555544 5555555555555555555544 5555555555555555555433 44455555555554
Q ss_pred CCCCCCch--------------------hhcCCCCCcEEEcCCCCCCcCCchh--------------------hccCCCC
Q 012694 229 NKLNTLPE--------------------SIARCSSLVELDASFNNLVCLPTNI--------------------GYGLLNL 268 (458)
Q Consensus 229 n~l~~l~~--------------------~l~~l~~L~~L~l~~n~l~~l~~~~--------------------~~~l~~L 268 (458)
|.++.++. .+.++++|++|++++|.++.++... ...+++|
T Consensus 144 n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L 223 (466)
T 1o6v_A 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 223 (466)
T ss_dssp EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTC
T ss_pred CccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCC
Confidence 44433221 1333444444555544444432100 2234555
Q ss_pred CEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCC
Q 012694 269 ERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQ 348 (458)
Q Consensus 269 ~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~ 348 (458)
+.|++++|.++.+ ..+..+++|++|++++|.+++++. +..+++|++|++++| .+..++. +..+++|+.|++++|+
T Consensus 224 ~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 224 DELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN--QISNISP-LAGLTALTNLELNENQ 298 (466)
T ss_dssp CEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS--CCCCCGG-GTTCTTCSEEECCSSC
T ss_pred CEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCC--ccCcccc-ccCCCccCeEEcCCCc
Confidence 5555555555544 245556666666666666666544 566667777777766 4455544 6677777777777777
Q ss_pred CCCCchhhhCCCCCcEEECcCCCCCCCcH
Q 012694 349 IRALPDTFFRLENLTKLNLDQNPLVIPPM 377 (458)
Q Consensus 349 l~~l~~~l~~l~~L~~L~L~~n~i~~~~~ 377 (458)
++.++. +..+++|+.|++++|++++.+.
T Consensus 299 l~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 299 LEDISP-ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CSCCGG-GGGCTTCSEEECCSSCCSCCGG
T ss_pred ccCchh-hcCCCCCCEEECcCCcCCCchh
Confidence 777654 6777888888888887776654
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=5.8e-25 Score=209.68 Aligned_cols=225 Identities=28% Similarity=0.323 Sum_probs=191.4
Q ss_pred CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCC-CCCC-chhhcCCCCccEE
Q 012694 149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNL-LQSL-PDSIGLLLNLKVL 224 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~-l~~l-~~~l~~l~~L~~L 224 (458)
.+++++|++++|.++.++. .|..+++|++|++++|.++.+ +..+.++++|++|++++|. ++.+ +..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4679999999999998874 789999999999999999987 5679999999999999997 8888 6788999999999
Q ss_pred EeeCCCCCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCC
Q 012694 225 NVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELH 302 (458)
Q Consensus 225 ~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~ 302 (458)
++++|.++.+ +..+.++++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 9999999977 5678889999999999999999998877789999999999999998876 4888999999999999999
Q ss_pred Cc-cccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694 303 GL-PRAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 303 ~l-~~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
++ |..+..+++|+.|++++| .+..++ ..+..+++|+.|++++|.+........-...++.+..+.+.+.+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~ 263 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFAN--NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSS--CCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred ccCHhHccCcccccEeeCCCC--cCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence 96 678999999999999998 566676 458999999999999999874422111112234444556666543
No 41
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=2.2e-24 Score=208.15 Aligned_cols=193 Identities=23% Similarity=0.370 Sum_probs=127.0
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
++|++|+++++.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence 45777777777777665 46667777777777777776655 677777777777777777664 4666777777777777
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG 309 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~ 309 (458)
+++.++. +..+++|++|++++|.++.++. +..+++|+.|++++|.++.++. +..+++|++|++++|.+++++. +.
T Consensus 118 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 192 (308)
T 1h6u_A 118 QITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LA 192 (308)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred CCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hc
Confidence 7766643 6666777777777777666654 3356666666666666666544 6666666666666666666654 56
Q ss_pred CCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc
Q 012694 310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP 353 (458)
Q Consensus 310 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~ 353 (458)
.+++|++|++++| .+..++ .+..+++|+.|++++|.++..|
T Consensus 193 ~l~~L~~L~L~~N--~l~~~~-~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 193 SLPNLIEVHLKNN--QISDVS-PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp GCTTCCEEECTTS--CCCBCG-GGTTCTTCCEEEEEEEEEECCC
T ss_pred CCCCCCEEEccCC--ccCccc-cccCCCCCCEEEccCCeeecCC
Confidence 6666666666665 444554 2566666666666666666554
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3.3e-24 Score=225.94 Aligned_cols=229 Identities=24% Similarity=0.275 Sum_probs=140.9
Q ss_pred CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCC-CCch-hhcCCCCccEE
Q 012694 148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQ-SLPD-SIGLLLNLKVL 224 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~-~l~~-~l~~l~~L~~L 224 (458)
.+++|++|++++|.++.+|..+..+++|++|++++|.++.+ +..+.++++|++|++++|.+. .++. .+..+++|++|
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 45677788888887777777777777888888887777765 345667777777777777655 4433 36667777777
Q ss_pred EeeCCCCCCC---chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-C-ccccCCCCCcEEEcccC
Q 012694 225 NVSGNKLNTL---PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-P-PSICEMRSLKYLDAHFN 299 (458)
Q Consensus 225 ~l~~n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~-~~l~~l~~L~~L~l~~n 299 (458)
++++|.++.+ +..+..+++|++|++++|.+..++...+..+++|+.|++++|.++.. + ..+..+++|++|++++|
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 7777776644 44566677777777777776666555555666677777766666533 2 23556666666666666
Q ss_pred CCCCc-cccccCCCcccEEEccCCCCCCCcc--chhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCC
Q 012694 300 ELHGL-PRAIGKLTRLEVLNLSSNFNDLTEL--PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 300 ~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l--~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
.+++. +..+..+++|++|++++|......+ +..+..+++|+.|++++|+++.+ |..+..+++|++|++++|+++..
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 66553 3455566666666666652211111 12345555555555555555544 34455555555555555555544
Q ss_pred c
Q 012694 376 P 376 (458)
Q Consensus 376 ~ 376 (458)
+
T Consensus 516 ~ 516 (606)
T 3t6q_A 516 S 516 (606)
T ss_dssp G
T ss_pred C
Confidence 3
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.9e-24 Score=227.70 Aligned_cols=228 Identities=25% Similarity=0.276 Sum_probs=151.8
Q ss_pred ccCCCceeEEEecCCCCCccch--------------------hhCCCCCCcEEEcccCCCCcc---chhhcCCcccceee
Q 012694 146 AESGVVVETVDLADRQLKLLPE--------------------AFGRLRGLVSLNLSRNLLEAM---PDSIAGLQKLEELD 202 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l~~--------------------~~~~l~~L~~L~l~~n~i~~l---~~~l~~l~~L~~L~ 202 (458)
+...++|++|++++|.+..+|. .+..+++|++|++++|.++.+ +..+..+++|++|+
T Consensus 303 l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred ccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence 3445677777777777766662 233444555555555555543 45566666667777
Q ss_pred eecCCCCCCchhhcCCCCccEEEeeCCCCCCCc--hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc
Q 012694 203 VSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP--ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT 280 (458)
Q Consensus 203 L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 280 (458)
+++|.++.+|..+..+++|++|++++|+++.++ ..+..+++|++|++++|.++......+..+++|++|++++|.++.
T Consensus 383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 766666666666666777777777777666543 356667777777777777766555555567777777777777764
Q ss_pred --CCccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCchhh
Q 012694 281 --FPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALPDTF 356 (458)
Q Consensus 281 --l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~l 356 (458)
+|..+..+++|++|++++|.++++ |..+..+++|++|++++| .+..+ |..++.+++|+.|++++|+|+.+|..+
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~ 540 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN--NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCG
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC--cCCCcCHHHccCCCcCCEEECCCCcCcccCHhH
Confidence 566677777777777777777774 356777777777777776 34444 566777777777777777777777667
Q ss_pred hCCC-CCcEEECcCCCCCCC
Q 012694 357 FRLE-NLTKLNLDQNPLVIP 375 (458)
Q Consensus 357 ~~l~-~L~~L~L~~n~i~~~ 375 (458)
..++ +|++|++++|++.+.
T Consensus 541 ~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp GGSCTTCCEEECCSCCCCCS
T ss_pred hhhcccCcEEEccCCCcccC
Confidence 7765 477777777777653
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.5e-23 Score=212.41 Aligned_cols=218 Identities=25% Similarity=0.335 Sum_probs=163.0
Q ss_pred CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch--------------------hhcCCcccceeeeecCC
Q 012694 148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD--------------------SIAGLQKLEELDVSSNL 207 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~--------------------~l~~l~~L~~L~L~~n~ 207 (458)
.+++|++|++++|.++.++. +..+++|++|++++|.++.++. .+.++++|++|++++|.
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence 44555555555555555543 5555666666665555544321 13344555555555555
Q ss_pred CCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccC
Q 012694 208 LQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE 287 (458)
Q Consensus 208 l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~ 287 (458)
++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.++.++. +..
T Consensus 189 l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~ 263 (466)
T 1o6v_A 189 VSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP-LSG 263 (466)
T ss_dssp CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred CCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccchh-hhc
Confidence 55553 35566667777777776665543 666788888888888887764 34479999999999999998865 889
Q ss_pred CCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEEC
Q 012694 288 MRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL 367 (458)
Q Consensus 288 l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L 367 (458)
+++|++|++++|.+++++. +..+++|++|++++| .+..++. ++.+++|+.|++++|+++.++. +..+++|++|++
T Consensus 264 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n--~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP-LAGLTALTNLELNEN--QLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF 338 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS--CCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred CCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC--cccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeEC
Confidence 9999999999999999877 889999999999998 5667655 7899999999999999998865 889999999999
Q ss_pred cCCCCCCCc
Q 012694 368 DQNPLVIPP 376 (458)
Q Consensus 368 ~~n~i~~~~ 376 (458)
++|++++.+
T Consensus 339 ~~n~l~~~~ 347 (466)
T 1o6v_A 339 YNNKVSDVS 347 (466)
T ss_dssp CSSCCCCCG
T ss_pred CCCccCCch
Confidence 999999863
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=8.1e-24 Score=202.36 Aligned_cols=199 Identities=29% Similarity=0.388 Sum_probs=121.9
Q ss_pred CCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEc
Q 012694 171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDA 249 (458)
Q Consensus 171 ~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l 249 (458)
.+++++.++++++.++.+|..+. +++++|++++|.++.+ +..+.++++|++|++++|.++.++.. ..+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 33444444444444444443322 3444444444444443 23344444444444444444444322 34445555555
Q ss_pred CCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCCCCCCC
Q 012694 250 SFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLT 327 (458)
Q Consensus 250 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~ 327 (458)
++|.++.++..+. .+++|+.|++++|.++.++ ..+..+++|++|++++|.++.+|. .+..+++|+.|++++| .+.
T Consensus 85 s~N~l~~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~ 161 (290)
T 1p9a_G 85 SHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN--NLT 161 (290)
T ss_dssp CSSCCSSCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS--CCS
T ss_pred CCCcCCcCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC--cCC
Confidence 5555554443222 4555555555555555554 345666777777777777777653 4567788888888887 566
Q ss_pred ccchh-hcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694 328 ELPET-IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 328 ~l~~~-l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
.+|.. +..+++|+.|++++|+|+.+|..+..+++|+.|++++|++.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 67654 4678899999999999999998888889999999999999865
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=4e-24 Score=225.31 Aligned_cols=221 Identities=20% Similarity=0.270 Sum_probs=134.2
Q ss_pred ceeEEEecCCCCCcc-chhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEee
Q 012694 151 VVETVDLADRQLKLL-PEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVS 227 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~ 227 (458)
.+++|++++|.++.+ |..|..+++|++|++++|.++.+ |..|+++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 467777777777655 34666777777777777766655 45566777777777777766655 4566667777777777
Q ss_pred CCCCCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCc--EEEcccCCCC-
Q 012694 228 GNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLK--YLDAHFNELH- 302 (458)
Q Consensus 228 ~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~--~L~l~~n~l~- 302 (458)
+|+++.+ +..+.++++|++|++++|.++.++...+..+++|+.|++++|.++.+ +..+..+++|+ +|++++|.++
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 7766665 34566666666666666666665432222466666666666666644 23344555555 4555555444
Q ss_pred --------------------------------------------------------------------------Cccc-c
Q 012694 303 --------------------------------------------------------------------------GLPR-A 307 (458)
Q Consensus 303 --------------------------------------------------------------------------~l~~-~ 307 (458)
+++. .
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 4332 2
Q ss_pred ccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCC
Q 012694 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLV 373 (458)
Q Consensus 308 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~ 373 (458)
+..+++|++|++++| .+..+|..++.+++|++|++++|+++.+ |..+..+++|++|++++|.+.
T Consensus 274 ~~~l~~L~~L~l~~n--~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp TTTCTTCSEEECTTS--CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred hccccCCCEEeccCC--ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 555566666666665 4445665566666666666666666655 345566666666666666554
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=217.25 Aligned_cols=113 Identities=24% Similarity=0.330 Sum_probs=62.5
Q ss_pred cCCCCCEEeccCCcCcc-CCccccCCCCCcEEEcccCCCCCc---cccccCCCcccEEEccCCCCCCCc-cchh-hc---
Q 012694 264 GLLNLERLSIKLNKLRT-FPPSICEMRSLKYLDAHFNELHGL---PRAIGKLTRLEVLNLSSNFNDLTE-LPET-IG--- 334 (458)
Q Consensus 264 ~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~l~~n~l~~l---~~~l~~l~~L~~L~L~~n~~~~~~-l~~~-l~--- 334 (458)
.+++|++|++++|.++. +|..+..+++|++|++++|.++++ |..+..+++|++|++++| .+.. +|.. +.
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N--~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN--SVSYDEKKGDCSWTK 399 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS--CCBCCGGGCSCCCCT
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC--cCCcccccchhccCc
Confidence 34455555555555553 344445555555555555555432 233444445555555444 1222 2211 11
Q ss_pred ------------------CC-CCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694 335 ------------------DL-INLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 335 ------------------~l-~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
.+ ++|+.|++++|+|+.+|..+..+++|++|++++|+++..+..
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 11 567777777777777777677778888888888887776654
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.4e-23 Score=196.96 Aligned_cols=199 Identities=36% Similarity=0.552 Sum_probs=148.4
Q ss_pred CCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCCCCCchh-hcCCCCCcEEEcCC
Q 012694 174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASF 251 (458)
Q Consensus 174 ~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~ 251 (458)
+.++++++++.++.+|..+. +++++|++++|.++.++. .+.++++|++|++++|.++.++.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45566666666666665433 456667777776666643 566677777777777777766544 35677777777777
Q ss_pred CCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCCCCCCCcc
Q 012694 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTEL 329 (458)
Q Consensus 252 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l 329 (458)
|.++.++...+..+++|++|++++|.++.++. .+..+++|++|++++|.+++++. .+..+++|++|++++| .+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~ 172 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN--QLKRV 172 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCSCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC--cCcEe
Confidence 77777776666677778888888887776654 46778888888888888888765 4788889999999987 56666
Q ss_pred ch-hhcCCCCCCEEeccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCc
Q 012694 330 PE-TIGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 330 ~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
+. .+..+++|+.|++++|+|+.+|. .+..+++|+.|++++|++.+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 54 47888999999999999998864 5888999999999999997653
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.1e-23 Score=215.80 Aligned_cols=135 Identities=30% Similarity=0.416 Sum_probs=91.5
Q ss_pred cCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc---CCccccCCCCCcEEEcccCCCCC-cccc-ccCC--
Q 012694 239 ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT---FPPSICEMRSLKYLDAHFNELHG-LPRA-IGKL-- 311 (458)
Q Consensus 239 ~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~---l~~~l~~l~~L~~L~l~~n~l~~-l~~~-l~~l-- 311 (458)
..+++|++|++++|.++......+..+++|+.|++++|.++. +|..+..+++|++|++++|.+++ +|.. +..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345556666666666555332333355566666666665553 22345555555555555555555 4431 2222
Q ss_pred --------------------CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchh-hhCCCCCcEEECcCC
Q 012694 312 --------------------TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT-FFRLENLTKLNLDQN 370 (458)
Q Consensus 312 --------------------~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~~n 370 (458)
++|++|++++| .+..+|..+..+++|++|++++|+|+.+|.. +..+++|++|++++|
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N--~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSN--KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSS--CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCC--cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 56777777776 5668888888999999999999999999875 889999999999999
Q ss_pred CCCCC
Q 012694 371 PLVIP 375 (458)
Q Consensus 371 ~i~~~ 375 (458)
++.+.
T Consensus 479 ~~~c~ 483 (520)
T 2z7x_B 479 PWDCS 483 (520)
T ss_dssp CBCCC
T ss_pred CCccc
Confidence 99865
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=1.3e-23 Score=202.82 Aligned_cols=211 Identities=23% Similarity=0.358 Sum_probs=186.3
Q ss_pred ecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCch
Q 012694 157 LADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPE 236 (458)
Q Consensus 157 l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~ 236 (458)
+..+.+.... .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|+++.++
T Consensus 26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 26 AGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp TTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred hCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence 3444454432 2345789999999999999986 68999999999999999999977 999999999999999999885
Q ss_pred hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccE
Q 012694 237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEV 316 (458)
Q Consensus 237 ~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~ 316 (458)
.+..+++|++|++++|.++.++. +..+++|+.|++++|.++.++. +..+++|++|++++|.+++++. +..+++|+.
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTT 177 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCE
Confidence 68999999999999999999875 5589999999999999998865 8899999999999999999877 899999999
Q ss_pred EEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHH
Q 012694 317 LNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEI 379 (458)
Q Consensus 317 L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~ 379 (458)
|++++| .+..++. +..+++|+.|++++|+|+.++ .+..+++|+.|++++|+++..+...
T Consensus 178 L~l~~n--~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 178 LKADDN--KISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp EECCSS--CCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred EECCCC--ccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCeee
Confidence 999998 6677765 889999999999999999987 4899999999999999998876543
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2e-23 Score=199.62 Aligned_cols=200 Identities=30% Similarity=0.353 Sum_probs=182.1
Q ss_pred cCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694 147 ESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN 225 (458)
Q Consensus 147 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 225 (458)
...+++++++++++.++.+|..+. +++++|++++|.++.++ ..+.++++|++|++++|.++.++.. ..+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 456789999999999999997664 69999999999999875 5799999999999999999998664 7899999999
Q ss_pred eeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEcccCCCCCc
Q 012694 226 VSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-ICEMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 226 l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l 304 (458)
+++|+++.+|..+..+++|++|++++|.++.++...+.++++|+.|++++|.++.++.. +..+++|+.|++++|+++.+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 99999999999999999999999999999999988888999999999999999988754 57899999999999999998
Q ss_pred cc-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCC
Q 012694 305 PR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351 (458)
Q Consensus 305 ~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~ 351 (458)
|. .+..+++|++|++++| .+..+|..+....+|+.|++++|.+..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N--~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CHHHhcCcCCCCEEECCCC--cCCccChhhcccccCCeEEeCCCCccC
Confidence 85 5688999999999998 677999999899999999999998774
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.1e-23 Score=217.61 Aligned_cols=209 Identities=33% Similarity=0.364 Sum_probs=136.9
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
++|+.|++++|.++.+|. .+++|++|++++|+|+.+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 567888888888877765 46777888888887777765 56677777777777766654 3444555555555
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhh----------------ccCCCCCEEeccCCcCccCCcccc-------
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIG----------------YGLLNLERLSIKLNKLRTFPPSIC------- 286 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~----------------~~l~~L~~L~L~~n~l~~l~~~l~------- 286 (458)
+++.+|.. +++|++|++++|.++.++.... ..+++|+.|++++|.++.+|..+.
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L 208 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWA 208 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred CCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEEC
Confidence 54444432 2344444444444433322100 122455555555555554433211
Q ss_pred ----------CCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhh
Q 012694 287 ----------EMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTF 356 (458)
Q Consensus 287 ----------~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l 356 (458)
.+++|++|++++|.++++| ..+++|+.|++++| .+..+|. .+++|+.|+|++|+|+.+|..+
T Consensus 209 ~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N--~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l 280 (622)
T 3g06_A 209 YNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN--RLTSLPM---LPSGLLSLSVYRNQLTRLPESL 280 (622)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS--CCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred cCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC--CCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence 1256777777777777776 35578888888887 5667776 5688999999999999999899
Q ss_pred hCCCCCcEEECcCCCCCCCcHH
Q 012694 357 FRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 357 ~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
.++++|+.|+|++|++++..+.
T Consensus 281 ~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp GGSCTTCEEECCSCCCCHHHHH
T ss_pred hhccccCEEEecCCCCCCcCHH
Confidence 9999999999999999855443
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=5.8e-23 Score=214.62 Aligned_cols=113 Identities=24% Similarity=0.278 Sum_probs=65.3
Q ss_pred cCCCCCEEeccCCcCcc-CCccccCCCCCcEEEcccCCCCCcc---ccccCCCcccEEEccCCCCCCCc-cch-------
Q 012694 264 GLLNLERLSIKLNKLRT-FPPSICEMRSLKYLDAHFNELHGLP---RAIGKLTRLEVLNLSSNFNDLTE-LPE------- 331 (458)
Q Consensus 264 ~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~L~~n~~~~~~-l~~------- 331 (458)
.+++|++|++++|.++. +|..+..+++|++|++++|.+++++ ..+..+++|++|++++|. +.. +|.
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS--LNSHAYDRTCAWAE 428 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC--CBSCCSSCCCCCCT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc--CCCccChhhhcCcc
Confidence 34455555555555553 3444555555555555555555432 234455555555555542 111 221
Q ss_pred ---------------hhcCC-CCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694 332 ---------------TIGDL-INLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 332 ---------------~l~~l-~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
.+..+ ++|+.|++++|+|+.+|..+..+++|++|++++|+++..|..
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 11122 577788888888887877777888888888888888876654
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=6.8e-23 Score=208.38 Aligned_cols=208 Identities=25% Similarity=0.301 Sum_probs=166.0
Q ss_pred ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694 146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN 225 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 225 (458)
+..+++|++|++++|.++.++ ++.+++|++|++++|.++.++ ++++++|++|++++|.++.++ ++.+++|++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 445688999999999999885 888999999999999999885 889999999999999999885 88899999999
Q ss_pred eeCCCCCCCchhhcCCCCCcEEEcCCC-CCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694 226 VSGNKLNTLPESIARCSSLVELDASFN-NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 226 l~~n~l~~l~~~l~~l~~L~~L~l~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l 304 (458)
+++|+++.++ ++.+++|++|++++| .++.++ +..+++|+.|++++|.++.++ +..+++|+.|++++|.++++
T Consensus 134 l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 134 CARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp CTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee
Confidence 9999998873 778888899998888 455552 336788888888888888876 77788888888888888887
Q ss_pred cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCC
Q 012694 305 PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374 (458)
Q Consensus 305 ~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~ 374 (458)
+ ++.+++|++|++++| .+..+| ++.+++|+.|++++|+++.+| ++.+++|+.|++++|.+..
T Consensus 207 ~--l~~l~~L~~L~Ls~N--~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~ 268 (457)
T 3bz5_A 207 D--LNQNIQLTFLDCSSN--KLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLE 268 (457)
T ss_dssp C--CTTCTTCSEEECCSS--CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSC
T ss_pred c--cccCCCCCEEECcCC--cccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCE
Confidence 3 777888888888887 556665 677888888888888888775 3445555555555554443
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=5.4e-23 Score=214.80 Aligned_cols=134 Identities=28% Similarity=0.357 Sum_probs=90.6
Q ss_pred CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC---ccccCCCCCcEEEcccCCCCC-cccc-ccC----
Q 012694 240 RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP---PSICEMRSLKYLDAHFNELHG-LPRA-IGK---- 310 (458)
Q Consensus 240 ~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~---~~l~~l~~L~~L~l~~n~l~~-l~~~-l~~---- 310 (458)
.+++|++|++++|.++......+..+++|+.|++++|.++.++ ..+..+++|++|++++|.+++ +|.. +..
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 4455556666666555433333335555555555555555433 234555555555555555554 3321 222
Q ss_pred -----------------C-CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchh-hhCCCCCcEEECcCCC
Q 012694 311 -----------------L-TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT-FFRLENLTKLNLDQNP 371 (458)
Q Consensus 311 -----------------l-~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~~n~ 371 (458)
+ ++|++|++++| .+..+|..+..+++|+.|++++|+|+.+|.. +..+++|+.|++++|+
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N--~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNN--RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSS--CCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCC--cCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 2 57788888877 6678888888999999999999999999876 8999999999999999
Q ss_pred CCCC
Q 012694 372 LVIP 375 (458)
Q Consensus 372 i~~~ 375 (458)
+.+.
T Consensus 509 ~~c~ 512 (562)
T 3a79_B 509 WDCT 512 (562)
T ss_dssp BCCC
T ss_pred cCCC
Confidence 9864
No 56
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=8.3e-24 Score=222.87 Aligned_cols=230 Identities=23% Similarity=0.198 Sum_probs=181.3
Q ss_pred ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh--------------------hcCCcccceeeeec
Q 012694 146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS--------------------IAGLQKLEELDVSS 205 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~--------------------l~~l~~L~~L~L~~ 205 (458)
+...++|+.|+++++.+..+| .+..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR 359 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCS
T ss_pred cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcC
Confidence 455788999999999999998 888999999999999998877731 22344455555555
Q ss_pred CCCCCC---chhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCcc-
Q 012694 206 NLLQSL---PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLRT- 280 (458)
Q Consensus 206 n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~- 280 (458)
|.++.+ +..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..++. ..+..+++|+.|++++|.++.
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 555443 556677777888888877777777777778888888888888776655 455678888888888888874
Q ss_pred CCccccCCCCCcEEEcccCCCCC--ccccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCC-chhh
Q 012694 281 FPPSICEMRSLKYLDAHFNELHG--LPRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRAL-PDTF 356 (458)
Q Consensus 281 l~~~l~~l~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l 356 (458)
.|..+..+++|++|++++|.+++ +|..++.+++|++|++++| .+..+ |..++.+++|++|++++|+++.+ |..+
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC--QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC--cCCccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence 55678888899999999998887 5778888999999999988 44444 56688899999999999999877 6788
Q ss_pred hCCCCCcEEECcCCCCCCCcHH
Q 012694 357 FRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 357 ~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
..+++|++|++++|+++..|..
T Consensus 518 ~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp TTCTTCCEEECTTSCCCCEESC
T ss_pred cCCCcCCEEECCCCcCcccCHh
Confidence 8899999999999999876654
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.3e-23 Score=203.19 Aligned_cols=200 Identities=21% Similarity=0.245 Sum_probs=174.6
Q ss_pred CCCceeEEEecCCCCC-ccchhh--CCCCCCcEEEcccCCCCccchhhcCC-----cccceeeeecCCCCCCc-hhhcCC
Q 012694 148 SGVVVETVDLADRQLK-LLPEAF--GRLRGLVSLNLSRNLLEAMPDSIAGL-----QKLEELDVSSNLLQSLP-DSIGLL 218 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~L~l~~n~i~~l~~~l~~l-----~~L~~L~L~~n~l~~l~-~~l~~l 218 (458)
..++|++|++++|.++ .+|..+ ..+++|++|++++|.++.+|..++.+ ++|++|++++|.++.++ ..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5689999999999998 677765 89999999999999999888777777 89999999999999886 789999
Q ss_pred CCccEEEeeCCCCCC---Cchhh--cCCCCCcEEEcCCCCCCcC---CchhhccCCCCCEEeccCCcCccCC--ccccCC
Q 012694 219 LNLKVLNVSGNKLNT---LPESI--ARCSSLVELDASFNNLVCL---PTNIGYGLLNLERLSIKLNKLRTFP--PSICEM 288 (458)
Q Consensus 219 ~~L~~L~l~~n~l~~---l~~~l--~~l~~L~~L~l~~n~l~~l---~~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l 288 (458)
++|++|++++|++.. ++..+ ..+++|++|++++|.++.+ +...+..+++|+.|++++|.++..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 999999999999763 34445 7899999999999999944 4455567899999999999999754 456678
Q ss_pred CCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCC
Q 012694 289 RSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL 352 (458)
Q Consensus 289 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l 352 (458)
++|++|++++|.++.+|..+. ++|++|++++| .+..+|. +..+++|++|++++|.|+..
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N--~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN--RLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS--CCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCCEEECCCCccChhhhhcc--CCceEEECCCC--CCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 999999999999999998776 89999999998 6677776 88999999999999998853
No 58
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.4e-24 Score=214.50 Aligned_cols=246 Identities=18% Similarity=0.204 Sum_probs=195.8
Q ss_pred HHHHHHhccCCCceeEEEecCCCCCc-----cchhhCCCCCCcEEEcccCCCCc----cchh-------hcCCcccceee
Q 012694 139 VVKILQEAESGVVVETVDLADRQLKL-----LPEAFGRLRGLVSLNLSRNLLEA----MPDS-------IAGLQKLEELD 202 (458)
Q Consensus 139 ~~~~l~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~i~~----l~~~-------l~~l~~L~~L~ 202 (458)
+..+...+..+++|++|++++|.++. ++..+..+++|++|++++|.+.. +|.. +..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 33344455567889999999999884 44457889999999999986653 3433 47899999999
Q ss_pred eecCCCCC-----CchhhcCCCCccEEEeeCCCCCC-----CchhhcCC---------CCCcEEEcCCCCCC--cCCc--
Q 012694 203 VSSNLLQS-----LPDSIGLLLNLKVLNVSGNKLNT-----LPESIARC---------SSLVELDASFNNLV--CLPT-- 259 (458)
Q Consensus 203 L~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l---------~~L~~L~l~~n~l~--~l~~-- 259 (458)
+++|.++. ++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|.++ .++.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99999986 67788999999999999999873 33444445 89999999999997 3332
Q ss_pred hhhccCCCCCEEeccCCcCc------cCCccccCCCCCcEEEcccCCCC-----CccccccCCCcccEEEccCCCCCCCc
Q 012694 260 NIGYGLLNLERLSIKLNKLR------TFPPSICEMRSLKYLDAHFNELH-----GLPRAIGKLTRLEVLNLSSNFNDLTE 328 (458)
Q Consensus 260 ~~~~~l~~L~~L~L~~n~l~------~l~~~l~~l~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~L~~n~~~~~~ 328 (458)
..+..+++|++|++++|.++ .++..+..+++|++|++++|.++ .++..+..+++|++|+|++| .+..
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~ 258 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--LLSA 258 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--CCCH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--CCch
Confidence 23447899999999999998 23337889999999999999994 47888999999999999998 3443
Q ss_pred -----cchhh--cCCCCCCEEeccCCCCCC-----Cchhh-hCCCCCcEEECcCCCCCCCcH--HHHhhcHHH
Q 012694 329 -----LPETI--GDLINLRELDLSNNQIRA-----LPDTF-FRLENLTKLNLDQNPLVIPPM--EIVNKGVEA 386 (458)
Q Consensus 329 -----l~~~l--~~l~~L~~L~L~~n~l~~-----l~~~l-~~l~~L~~L~L~~n~i~~~~~--~~~~~~~~~ 386 (458)
++..+ +.+++|+.|+|++|.|+. +|..+ .++++|++|++++|+++.... ..+...++.
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 331 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhh
Confidence 35666 348999999999999997 78777 668999999999999998773 444443433
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=219.19 Aligned_cols=225 Identities=27% Similarity=0.301 Sum_probs=173.3
Q ss_pred CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh--------------------hcCCcccceeeeecCC
Q 012694 148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS--------------------IAGLQKLEELDVSSNL 207 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~--------------------l~~l~~L~~L~L~~n~ 207 (458)
..++|+.|++++|.+..+|..+..+ +|++|++++|.++.+|.. ...+++|++|++++|.
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 3577888888888888888777777 888888888877766531 1456677777777777
Q ss_pred CCCC---chhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCcc-CC
Q 012694 208 LQSL---PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLRT-FP 282 (458)
Q Consensus 208 l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~-l~ 282 (458)
++.+ +..+..+++|++|++++|.++.++..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+.. .+
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence 7654 466777888888888888887776667788888888888888776543 455578888888888888874 45
Q ss_pred ccccCCCCCcEEEcccCCCC--CccccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhC
Q 012694 283 PSICEMRSLKYLDAHFNELH--GLPRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFR 358 (458)
Q Consensus 283 ~~l~~l~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~ 358 (458)
..+..+++|++|++++|.++ .+|..+..+++|++|++++| .+..+ |..++.+++|+.|++++|+++.++ ..+..
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC--ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence 66778888888888888887 37778888888888888887 45555 667888888888888888888775 45788
Q ss_pred CCCCcEEECcCCCCCCC
Q 012694 359 LENLTKLNLDQNPLVIP 375 (458)
Q Consensus 359 l~~L~~L~L~~n~i~~~ 375 (458)
+++|++|++++|++.+.
T Consensus 517 l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 517 LTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CTTCCEEECCSSCBCCC
T ss_pred ccCCcEEEecCCcccCC
Confidence 88888888888888865
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1e-22 Score=192.65 Aligned_cols=197 Identities=33% Similarity=0.459 Sum_probs=175.8
Q ss_pred ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCchh-hcCCCCccEEEeeC
Q 012694 151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLNVSG 228 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~ 228 (458)
..+.++++++.++.+|..+. ++|++|++++|.++.++. .|.++++|++|++++|.++.++.. +.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46789999999999987654 689999999999998875 699999999999999999998764 58899999999999
Q ss_pred CCCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEcccCCCCCccc
Q 012694 229 NKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-ICEMRSLKYLDAHFNELHGLPR 306 (458)
Q Consensus 229 n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~ 306 (458)
|+++.++. .+..+++|++|++++|.++.++...+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 99998875 568899999999999999999988888999999999999999988765 7889999999999999999875
Q ss_pred -cccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCC
Q 012694 307 -AIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRA 351 (458)
Q Consensus 307 -~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~ 351 (458)
.+..+++|++|++++| .+..++. .+..+++|+.|++++|.+..
T Consensus 175 ~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNN--QLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCC--cCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 5889999999999998 5667765 47889999999999998763
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=1.7e-24 Score=209.79 Aligned_cols=213 Identities=19% Similarity=0.184 Sum_probs=186.6
Q ss_pred cCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694 147 ESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV 226 (458)
Q Consensus 147 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l 226 (458)
...++|++|++++|.++.++. +..+++|++|++++|.++.++ ..++|++|++++|.++.++.. .+++|++|++
T Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l 127 (317)
T 3o53_A 55 APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYL 127 (317)
T ss_dssp TTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEEC
T ss_pred hCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEEC
Confidence 457899999999999987765 899999999999999998775 348999999999999988543 4789999999
Q ss_pred eCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchh-hccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694 227 SGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNI-GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 227 ~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l 304 (458)
++|+++.++ ..+..+++|++|++++|.++.++... ...+++|++|++++|.++.++. ...+++|++|++++|.++++
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcc
Confidence 999999875 47888999999999999999876544 3478999999999999998854 44589999999999999999
Q ss_pred cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC--CCchhhhCCCCCcEEECcC
Q 012694 305 PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR--ALPDTFFRLENLTKLNLDQ 369 (458)
Q Consensus 305 ~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~~ 369 (458)
|..+..+++|++|++++| .+..+|..+..+++|+.|++++|.++ .++..+..+++|+.|++.+
T Consensus 207 ~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CGGGGGGTTCSEEECTTS--CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhcccCcccEEECcCC--cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 888999999999999998 67789999999999999999999998 5678888888888888763
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=2.7e-23 Score=216.30 Aligned_cols=107 Identities=28% Similarity=0.391 Sum_probs=69.5
Q ss_pred CCEEeccCCcCccCCccc-cCCCCCcEEEcccCCCCC-cc---ccccCCCcccEEEccCCCCCCCccc---hhhcCCCCC
Q 012694 268 LERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHG-LP---RAIGKLTRLEVLNLSSNFNDLTELP---ETIGDLINL 339 (458)
Q Consensus 268 L~~L~L~~n~l~~l~~~l-~~l~~L~~L~l~~n~l~~-l~---~~l~~l~~L~~L~L~~n~~~~~~l~---~~l~~l~~L 339 (458)
|+.|++++|.++.+|..+ ..+++|++|++++|.+++ +| ..++.+++|++|++++| .+..++ ..++.+++|
T Consensus 312 L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN--HLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp CCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS--CCCCHHHHHHHGGGCTTC
T ss_pred ceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC--cccccccchhhhhcCCCC
Confidence 444444444444454444 356777777777777766 22 23566777777777776 455554 346677778
Q ss_pred CEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCc
Q 012694 340 RELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 340 ~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
++|++++|+++.+|..+..+++|++|++++|.++..+
T Consensus 390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~ 426 (549)
T 2z81_A 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK 426 (549)
T ss_dssp CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCC
T ss_pred CEEECCCCCCccCChhhcccccccEEECCCCCccccc
Confidence 8888888877777777777777777777777776544
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=1e-22 Score=217.48 Aligned_cols=229 Identities=27% Similarity=0.306 Sum_probs=105.1
Q ss_pred CCCceeEEEecCCCCC--ccch-hhCC--CCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCC-Cc-hhhcCCC
Q 012694 148 SGVVVETVDLADRQLK--LLPE-AFGR--LRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQS-LP-DSIGLLL 219 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~--~l~~-~~~~--l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~-l~-~~l~~l~ 219 (458)
.+++|++|++++|.+. .++. .|.. .++|++|++++|.++.+ +..+..+++|++|++++|.++. +| ..+.+++
T Consensus 351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 430 (680)
T 1ziw_A 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430 (680)
T ss_dssp TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT
T ss_pred cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc
Confidence 3456666666665432 2221 1111 13455555555555544 2345555555555555555542 32 3445555
Q ss_pred CccEEEeeCCCCCCC-chhhcCCCCCcEEEcCCCCCCcC--CchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEE
Q 012694 220 NLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCL--PTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLD 295 (458)
Q Consensus 220 ~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l--~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~ 295 (458)
+|++|++++|+++.+ +..+..+++|+.|++++|.+..+ ....+..+++|+.|++++|.++.++. .+..+++|++|+
T Consensus 431 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 510 (680)
T 1ziw_A 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510 (680)
T ss_dssp TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEe
Confidence 555555555554433 23344445555555555444311 11122244455555555555544432 244444555555
Q ss_pred cccCCCCCccc---------cccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCCch-hhhCCCCCcE
Q 012694 296 AHFNELHGLPR---------AIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALPD-TFFRLENLTK 364 (458)
Q Consensus 296 l~~n~l~~l~~---------~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~ 364 (458)
+++|.++.++. .+..+++|++|++++| .+..+|. .+..+++|+.|++++|+|+.+|. .+..+++|+.
T Consensus 511 Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp CCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 55554444311 1344445555555544 3334433 24444555555555555554432 2344455555
Q ss_pred EECcCCCCCCCcHH
Q 012694 365 LNLDQNPLVIPPME 378 (458)
Q Consensus 365 L~L~~n~i~~~~~~ 378 (458)
|++++|+++..+..
T Consensus 589 L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 589 LNLQKNLITSVEKK 602 (680)
T ss_dssp EECTTSCCCBCCHH
T ss_pred EECCCCcCCccChh
Confidence 55555555444443
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=9.5e-23 Score=189.18 Aligned_cols=202 Identities=20% Similarity=0.255 Sum_probs=159.2
Q ss_pred CCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCC-CCCCch-hhcCCCCccEEEeeC-CCCCCCc-h
Q 012694 162 LKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNL-LQSLPD-SIGLLLNLKVLNVSG-NKLNTLP-E 236 (458)
Q Consensus 162 l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~-l~~l~~-~l~~l~~L~~L~l~~-n~l~~l~-~ 236 (458)
++.+|. +. .+|++|++++|.++.++. .+.++++|++|++++|. ++.++. .+.++++|++|++++ |+++.++ .
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 677776 43 378888888888888765 67888888888888886 887754 678888888888887 8888776 4
Q ss_pred hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCC---EEeccCC-cCccCCc-cccCCCCCc-EEEcccCCCCCccccccC
Q 012694 237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLE---RLSIKLN-KLRTFPP-SICEMRSLK-YLDAHFNELHGLPRAIGK 310 (458)
Q Consensus 237 ~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~---~L~L~~n-~l~~l~~-~l~~l~~L~-~L~l~~n~l~~l~~~l~~ 310 (458)
.+.++++|++|++++|.++.++. +..+++|+ .|++++| .++.++. .+..+++|+ +|++++|.++.+|.....
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 57788888888888888888776 44677777 8888888 8887765 477888999 999999999888764444
Q ss_pred CCcccEEEccCCCCCCCccc-hhhcCC-CCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCC
Q 012694 311 LTRLEVLNLSSNFNDLTELP-ETIGDL-INLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371 (458)
Q Consensus 311 l~~L~~L~L~~n~~~~~~l~-~~l~~l-~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~ 371 (458)
.++|++|++++|. .+..++ ..+..+ ++|+.|++++|+|+.+|.. .+++|+.|+++++.
T Consensus 178 ~~~L~~L~L~~n~-~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 178 GTKLDAVYLNKNK-YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCEEEEEECTTCT-TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCCEEEcCCCC-CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 4889999999871 255664 457778 8999999999999988754 67889999988763
No 65
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=3.8e-23 Score=199.61 Aligned_cols=221 Identities=23% Similarity=0.236 Sum_probs=180.2
Q ss_pred CceeEEEecCCCCCc--cch--hhCCCCCCcEEEcccCCCCc-cchhh--cCCcccceeeeecCCCCCC-c----hhhcC
Q 012694 150 VVVETVDLADRQLKL--LPE--AFGRLRGLVSLNLSRNLLEA-MPDSI--AGLQKLEELDVSSNLLQSL-P----DSIGL 217 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~--l~~--~~~~l~~L~~L~l~~n~i~~-l~~~l--~~l~~L~~L~L~~n~l~~l-~----~~l~~ 217 (458)
..++.+.+.++.++. +.. .+..+++|++|++++|.++. .|..+ ..+++|++|++++|.++.. + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 457888998888762 211 12234679999999999984 45556 8999999999999999853 2 34467
Q ss_pred CCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCc---CCc-hhhccCCCCCEEeccCCcCccCCcc----ccCC
Q 012694 218 LLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVC---LPT-NIGYGLLNLERLSIKLNKLRTFPPS----ICEM 288 (458)
Q Consensus 218 l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~---l~~-~~~~~l~~L~~L~L~~n~l~~l~~~----l~~l 288 (458)
+++|++|++++|+++.++ ..+..+++|++|++++|.+.. ++. .....+++|++|++++|.++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 999999999999999775 678899999999999999764 322 2234789999999999999877552 4678
Q ss_pred CCCcEEEcccCCCCCc-cccccCC---CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcE
Q 012694 289 RSLKYLDAHFNELHGL-PRAIGKL---TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTK 364 (458)
Q Consensus 289 ~~L~~L~l~~n~l~~l-~~~l~~l---~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~ 364 (458)
++|++|++++|.++++ |..+..+ ++|++|++++| .+..+|..+. ++|+.|++++|+|+.+|. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N--~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA--GLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS--CCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC--CCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccE
Confidence 9999999999999996 7667666 69999999998 6678888764 799999999999999864 788999999
Q ss_pred EECcCCCCCCC
Q 012694 365 LNLDQNPLVIP 375 (458)
Q Consensus 365 L~L~~n~i~~~ 375 (458)
|++++|+++..
T Consensus 299 L~L~~N~l~~~ 309 (310)
T 4glp_A 299 LTLDGNPFLVP 309 (310)
T ss_dssp EECSSTTTSCC
T ss_pred EECcCCCCCCC
Confidence 99999999864
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=3.5e-22 Score=209.62 Aligned_cols=206 Identities=31% Similarity=0.355 Sum_probs=167.3
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
.+++.|+++++.++.+|..+. ++|++|++++|.|+.+|. .+++|++|++++|.|+.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 358999999999999998665 799999999999999987 67899999999999999987 7899999999999
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCC-----------------CCCc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEM-----------------RSLK 292 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l-----------------~~L~ 292 (458)
+++.+|. .+++|+.|++++|.++.++.. +++|++|++++|.++.+|..+.++ ++|+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~ 184 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ 184 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCc
Confidence 9999877 578999999999999998863 588999999999888765433222 6778
Q ss_pred EEEcccCCCCCccccccC-----------------CCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchh
Q 012694 293 YLDAHFNELHGLPRAIGK-----------------LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT 355 (458)
Q Consensus 293 ~L~l~~n~l~~l~~~l~~-----------------l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~ 355 (458)
.|++++|.++++|..+.+ +++|+.|++++| .+..+| ..+++|+.|++++|+|+.+|.
T Consensus 185 ~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N--~L~~lp---~~l~~L~~L~Ls~N~L~~lp~- 258 (622)
T 3g06_A 185 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN--RLTSLP---VLPSELKELMVSGNRLTSLPM- 258 (622)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS--CCSCCC---CCCTTCCEEECCSSCCSCCCC-
T ss_pred EEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC--ccCcCC---CCCCcCcEEECCCCCCCcCCc-
Confidence 888888887776543221 145667777766 455565 456788888888888888876
Q ss_pred hhCCCCCcEEECcCCCCCCCcHH
Q 012694 356 FFRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 356 l~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
.+++|+.|+|++|+++.+|..
T Consensus 259 --~~~~L~~L~Ls~N~L~~lp~~ 279 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLTRLPES 279 (622)
T ss_dssp --CCTTCCEEECCSSCCCSCCGG
T ss_pred --ccccCcEEeCCCCCCCcCCHH
Confidence 568899999999999877654
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.7e-22 Score=210.21 Aligned_cols=173 Identities=27% Similarity=0.331 Sum_probs=88.9
Q ss_pred ceeeeecCCCCCCchhh-cCCCCccEEEeeCCCCCC-Cc---hhhcCCCCCcEEEcCCCCCCcCCc--hhhccCCCCCEE
Q 012694 199 EELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNT-LP---ESIARCSSLVELDASFNNLVCLPT--NIGYGLLNLERL 271 (458)
Q Consensus 199 ~~L~L~~n~l~~l~~~l-~~l~~L~~L~l~~n~l~~-l~---~~l~~l~~L~~L~l~~n~l~~l~~--~~~~~l~~L~~L 271 (458)
++|++++|.++.+|..+ .++++|++|++++|+++. +| ..+..+++|++|++++|.++.++. ..+..+++|++|
T Consensus 313 ~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp CEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred eEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence 33333333333344333 245556666666665553 21 124455666666666666655542 334456666666
Q ss_pred eccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc------------------CCCcccEEEccCCCCCCCccchhh
Q 012694 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG------------------KLTRLEVLNLSSNFNDLTELPETI 333 (458)
Q Consensus 272 ~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~------------------~l~~L~~L~L~~n~~~~~~l~~~l 333 (458)
++++|.++.+|..+..+++|++|++++|.++.++..+. .+++|++|++++| .+..+|. .
T Consensus 393 ~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N--~l~~ip~-~ 469 (549)
T 2z81_A 393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN--KLKTLPD-A 469 (549)
T ss_dssp ECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS--CCSSCCC-G
T ss_pred ECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC--ccCcCCC-c
Confidence 66666666666666666666666666666655443221 3444444555444 3334443 2
Q ss_pred cCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCC
Q 012694 334 GDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVI 374 (458)
Q Consensus 334 ~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~ 374 (458)
..+++|+.|++++|+|+.++ ..+..+++|+.|++++|++.+
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 34455555555555555443 234555555555555555543
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=9.4e-23 Score=207.15 Aligned_cols=202 Identities=31% Similarity=0.338 Sum_probs=163.6
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
++|++|++++|.++.+|.. +.+|++|++++|.++.++.. .++|++|++++|.++.+| .++++++|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC
Confidence 5788999999988887753 47889999999988877542 268999999999998888 5888999999999999
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG 309 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~ 309 (458)
+++.+|..+ .+|++|++++|.++.++. +.++++|+.|++++|.++.+|... ++|++|++++|.++.+|. ++
T Consensus 164 ~l~~lp~~~---~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~ 234 (454)
T 1jl5_A 164 SLKKLPDLP---PSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQ 234 (454)
T ss_dssp CCSCCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CT
T ss_pred cCcccCCCc---ccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cC
Confidence 988877543 589999999999988873 458899999999999988876543 589999999999998885 88
Q ss_pred CCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694 310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 310 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
.+++|++|++++| .+..+|.. +++|+.|++++|+++.+|.. .++|++|++++|.+++.
T Consensus 235 ~l~~L~~L~l~~N--~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 235 NLPFLTTIYADNN--LLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp TCTTCCEEECCSS--CCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE
T ss_pred CCCCCCEEECCCC--cCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc
Confidence 8999999999987 55666653 47889999999998888754 36788888888887763
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.3e-22 Score=216.61 Aligned_cols=225 Identities=26% Similarity=0.357 Sum_probs=170.7
Q ss_pred CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEe
Q 012694 150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNV 226 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l 226 (458)
+++++|++++|.++.++. .|..+++|++|++++|.++.+ |..++++++|++|++++|.++.+|. .+.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 578999999999887765 688889999999999988876 4668889999999999999988876 5888999999999
Q ss_pred eCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcc-c--cCCCCCcEEEcccCCCC
Q 012694 227 SGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-I--CEMRSLKYLDAHFNELH 302 (458)
Q Consensus 227 ~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l--~~l~~L~~L~l~~n~l~ 302 (458)
++|+++.++ ..+.++++|++|++++|.++.++...+.++++|++|++++|.++.++.. + ..+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 999888776 5688889999999999988887776666888999999999988876543 2 35578888888888887
Q ss_pred Ccc-ccccCC---------------------------CcccEEEccCCCCCCCc-cchhhcCCCC--CCEEeccCCCCCC
Q 012694 303 GLP-RAIGKL---------------------------TRLEVLNLSSNFNDLTE-LPETIGDLIN--LRELDLSNNQIRA 351 (458)
Q Consensus 303 ~l~-~~l~~l---------------------------~~L~~L~L~~n~~~~~~-l~~~l~~l~~--L~~L~L~~n~l~~ 351 (458)
+++ ..+..+ ++|+.|++++| .+.. .|.++..++. |+.|++++|+++.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n--~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS--CCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC--cccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 753 344433 34555566655 2222 2344555543 7777777777776
Q ss_pred C-chhhhCCCCCcEEECcCCCCCCCc
Q 012694 352 L-PDTFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 352 l-~~~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
+ +..++.+++|++|++++|.+...+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEEC
T ss_pred cCcccccCcccccEeeCCCCccCccC
Confidence 5 356777777777777777776543
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.4e-22 Score=192.11 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=173.6
Q ss_pred CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEe
Q 012694 150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNV 226 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l 226 (458)
+++++|++++|.++.++. .|..+++|++|++++|.++.++. .+.++++|++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 469999999999998876 78999999999999999998864 6899999999999999999875 67899999999999
Q ss_pred eCCCCCCCch-hhcCCCCCcEEEcCCCCCCcCC-chhhccCCCCCEEeccCCcCccCC-ccccCCCCCc----EEEcccC
Q 012694 227 SGNKLNTLPE-SIARCSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLK----YLDAHFN 299 (458)
Q Consensus 227 ~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~----~L~l~~n 299 (458)
++|.++.++. .+..+++|++|++++|.++.+. ...+..+++|++|++++|.++.++ ..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 9999998765 6889999999999999999753 344558999999999999999775 4566666666 8999999
Q ss_pred CCCCccccccCCCcccEEEccCCCCCCCccchh-hcCCCCCCEEeccCCCCCC
Q 012694 300 ELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRA 351 (458)
Q Consensus 300 ~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~-l~~l~~L~~L~L~~n~l~~ 351 (458)
.++.++.......+|++|++++| .+..+|.. +..+++|+.|++++|.++.
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTN--QLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSS--CCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccCCCcccEEECCCC--ceeecCHhHhcccccccEEEccCCcccc
Confidence 99998876666679999999998 56777654 5889999999999999884
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.3e-22 Score=188.21 Aligned_cols=193 Identities=23% Similarity=0.337 Sum_probs=173.6
Q ss_pred CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCC-CCccch-hhcCCcccceeeeec-CCCCCCc-hhhcCCCCccEE
Q 012694 150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNL-LEAMPD-SIAGLQKLEELDVSS-NLLQSLP-DSIGLLLNLKVL 224 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~-i~~l~~-~l~~l~~L~~L~L~~-n~l~~l~-~~l~~l~~L~~L 224 (458)
.+++.|++++|.++.++. .|..+++|++|++++|. ++.++. .|.++++|++|++++ |.++.++ ..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999998877 78999999999999997 998875 689999999999998 9999886 578899999999
Q ss_pred EeeCCCCCCCchhhcCCCCCc---EEEcCCC-CCCcCCchhhccCCCCC-EEeccCCcCccCCccccCCCCCcEEEcccC
Q 012694 225 NVSGNKLNTLPESIARCSSLV---ELDASFN-NLVCLPTNIGYGLLNLE-RLSIKLNKLRTFPPSICEMRSLKYLDAHFN 299 (458)
Q Consensus 225 ~l~~n~l~~l~~~l~~l~~L~---~L~l~~n-~l~~l~~~~~~~l~~L~-~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 299 (458)
++++|+++.+|. +..+++|+ +|++++| .++.++...+.++++|+ .|++++|.++.+|......++|++|++++|
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 999999999986 88888888 9999999 99999998888999999 999999999998876655689999999999
Q ss_pred C-CCCcc-ccccCC-CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCC
Q 012694 300 E-LHGLP-RAIGKL-TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNN 347 (458)
Q Consensus 300 ~-l~~l~-~~l~~l-~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n 347 (458)
. ++.++ ..+..+ ++|+.|++++| .+..+|.. .+++|+.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N--~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQT--SVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTC--CCCCCCCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCC--ccccCChh--HhccCceeeccCc
Confidence 5 99986 468888 99999999998 66788765 7889999999887
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.1e-23 Score=213.85 Aligned_cols=213 Identities=19% Similarity=0.183 Sum_probs=187.2
Q ss_pred ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694 146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN 225 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 225 (458)
+..+++|++|++++|.++..++ +..+++|++|++++|.++.++. .++|++|++++|.++.++.. .+++|++|+
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~ 126 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIY 126 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEE
T ss_pred HhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEE
Confidence 4467899999999999986665 8999999999999999988764 38999999999999988543 578999999
Q ss_pred eeCCCCCCC-chhhcCCCCCcEEEcCCCCCCcCCchh-hccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCC
Q 012694 226 VSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNI-GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG 303 (458)
Q Consensus 226 l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~ 303 (458)
+++|.++.+ |..++.+++|++|++++|.++.++... ...+++|+.|++++|.++.++. ...+++|++|++++|.+++
T Consensus 127 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC
Confidence 999999977 557888999999999999999765444 4478999999999999998854 4569999999999999999
Q ss_pred ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC--CCchhhhCCCCCcEEECc
Q 012694 304 LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR--ALPDTFFRLENLTKLNLD 368 (458)
Q Consensus 304 l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~ 368 (458)
+|..+..+++|+.|++++| .+..+|..++.+++|+.|++++|.+. .+|.++..++.|+.+++.
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECGGGGGGTTCSEEECTTS--CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHhHcCCCCccEEEecCC--cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9888999999999999998 67789999999999999999999998 667788888888888885
No 73
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3.9e-22 Score=217.94 Aligned_cols=107 Identities=29% Similarity=0.389 Sum_probs=65.7
Q ss_pred CCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEe
Q 012694 267 NLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELD 343 (458)
Q Consensus 267 ~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~ 343 (458)
+|+.|++++|.+..+ +..+..+++|+.|++++|.++++ +..+..+++|++|++++| .+..+ +..+..+++|+.|+
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN--LLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC--CCSCCCSCSCSSCTTCCEEE
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC--CCCccCHHHhcCCCCCCEEE
Confidence 445555555544433 33455566666666666666664 345666677777777766 33333 45566677777777
Q ss_pred ccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694 344 LSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 344 L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
+++|+|+.++ ..+..+++|++|++++|.++..
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 7777777664 3566677777777777776653
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2e-22 Score=190.76 Aligned_cols=203 Identities=25% Similarity=0.314 Sum_probs=162.5
Q ss_pred CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEee
Q 012694 149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVS 227 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~ 227 (458)
.++|+.|++.++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. .+.++++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 367888999998888765 4778889999999999888874 68888899999999998888754 46888899999999
Q ss_pred CCCCCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEcccCCCCCcc
Q 012694 228 GNKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-ICEMRSLKYLDAHFNELHGLP 305 (458)
Q Consensus 228 ~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~ 305 (458)
+|+++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|.++.++.. +..+++|++|++++|.+++++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 9988877654 67888899999999988888887777888899999999988877654 577888999999999888866
Q ss_pred c-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCC
Q 012694 306 R-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLEN 361 (458)
Q Consensus 306 ~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~ 361 (458)
. .+..+++|++|++++|.. .+.+++|+.|+++.|+++ .+|.+++.++.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCB--------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHhCCcCCCEEEccCCCc--------cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 4 578888899999988721 244667888888888777 56766666544
No 75
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=4.7e-22 Score=217.31 Aligned_cols=229 Identities=26% Similarity=0.306 Sum_probs=144.8
Q ss_pred CCCceeEEEecCCC-CCcc-chhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCC-Cchh--hcCCCCc
Q 012694 148 SGVVVETVDLADRQ-LKLL-PEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQS-LPDS--IGLLLNL 221 (458)
Q Consensus 148 ~~~~L~~L~l~~~~-l~~l-~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~-l~~~--l~~l~~L 221 (458)
.+++|++|++++|. +..+ |..|..+++|++|++++|.++.+ |..|+++++|++|++++|.++. ++.. +.++++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 44556666666653 2344 44566666666666666666655 4556666666666666666654 3332 6666667
Q ss_pred cEEEeeCCCCCCC--chhhcCCCCCcEEEcCCCCCCcCCchhhccC--CC------------------------------
Q 012694 222 KVLNVSGNKLNTL--PESIARCSSLVELDASFNNLVCLPTNIGYGL--LN------------------------------ 267 (458)
Q Consensus 222 ~~L~l~~n~l~~l--~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l--~~------------------------------ 267 (458)
++|++++|.++.+ +..++++++|++|++++|.++.+....+..+ ++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 7777777666644 2356666777777777666654332222111 22
Q ss_pred CCEEeccCCcCc-cCCccc------------------------------------cC--CCCCcEEEcccCCCCCc-ccc
Q 012694 268 LERLSIKLNKLR-TFPPSI------------------------------------CE--MRSLKYLDAHFNELHGL-PRA 307 (458)
Q Consensus 268 L~~L~L~~n~l~-~l~~~l------------------------------------~~--l~~L~~L~l~~n~l~~l-~~~ 307 (458)
|+.|++++|.++ .++..+ .. .++|+.|++++|.+.++ +..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 444444444332 111110 00 14677777777777664 456
Q ss_pred ccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCcHH
Q 012694 308 IGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 308 l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
+..+++|+.|+|++| .+..+ +..+..+++|+.|++++|+++.+ +..+..+++|++|++++|.+...+..
T Consensus 286 ~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 286 FETLKDLKVLNLAYN--KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp SSSCCCCCEEEEESC--CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred hhcCCCCCEEECCCC--cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence 778888889999887 44554 45688899999999999999877 56888999999999999998877654
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=208.25 Aligned_cols=129 Identities=27% Similarity=0.356 Sum_probs=65.6
Q ss_pred ceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEee
Q 012694 151 VVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVS 227 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~ 227 (458)
.+++|++++|.++.++. .|..+++|++|++++|.++.++ ..|+++++|++|++++|.++.++ ..+.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 35555555555554432 4555555555555555555443 33555555555555555555443 345555555555555
Q ss_pred CCCCCCCch-hhcCCCCCcEEEcCCCCCCcC--CchhhccCCCCCEEeccCCcCcc
Q 012694 228 GNKLNTLPE-SIARCSSLVELDASFNNLVCL--PTNIGYGLLNLERLSIKLNKLRT 280 (458)
Q Consensus 228 ~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l--~~~~~~~l~~L~~L~L~~n~l~~ 280 (458)
+|+++.++. .++++++|++|++++|.++.+ |.. +.++++|++|++++|.++.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence 555554433 345555555555555555432 222 2245555555555555543
No 77
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=8.9e-22 Score=204.18 Aligned_cols=187 Identities=29% Similarity=0.392 Sum_probs=155.2
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
.+++.|++++|.++.+|..+ +++|++|++++|.|+.+| ..+++|++|++++|.|+.+|. +.+ +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 47999999999999888765 378999999999999888 567899999999999999887 655 8999999999
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG 309 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~ 309 (458)
+++.+|. .+++|++|++++|.++.++. .+++|+.|++++|.++.+|. +. ++|++|++++|.|+.+|. +.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~ 199 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP 199 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH
Confidence 9998877 68899999999999998876 47889999999999998887 55 889999999999998887 55
Q ss_pred CCCcc-------cEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCC-CchhhhCC
Q 012694 310 KLTRL-------EVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA-LPDTFFRL 359 (458)
Q Consensus 310 ~l~~L-------~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~l 359 (458)
. +| +.|+|++| .+..+|..+..+++|+.|+|++|.|+. +|..+..+
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCREN--RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ----------CCEEEECCSS--CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred H--hhhcccccceEEecCCC--cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 4 66 88888887 667888878778888888888888873 35555543
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=2.5e-21 Score=196.63 Aligned_cols=207 Identities=31% Similarity=0.366 Sum_probs=103.1
Q ss_pred ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCC
Q 012694 151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK 230 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~ 230 (458)
+|++|++++|.++.+| .+..+++|++|++++|.++.+|..+ .+|++|++++|.++.+| .++++++|++|++++|+
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence 4555555555555554 3555555555555555555544322 24555555555555544 34555555555555555
Q ss_pred CCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcccc-----------------CCCCCcE
Q 012694 231 LNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC-----------------EMRSLKY 293 (458)
Q Consensus 231 l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~-----------------~l~~L~~ 293 (458)
++.+|... ++|++|++++|.++.++. +..+++|+.|++++|.++.+|.... ..++|++
T Consensus 207 l~~l~~~~---~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~ 281 (454)
T 1jl5_A 207 LKKLPDLP---LSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTF 281 (454)
T ss_dssp CSSCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred CCcCCCCc---CcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCE
Confidence 44433211 244444444444444442 2244455555555554444432110 0133444
Q ss_pred EEcccCCCCCcccc---cc-------------CC-CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhh
Q 012694 294 LDAHFNELHGLPRA---IG-------------KL-TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTF 356 (458)
Q Consensus 294 L~l~~n~l~~l~~~---l~-------------~l-~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l 356 (458)
|++++|.+++++.. +. .+ ++|++|++++| .+..+|.. +++|+.|++++|+++.+|.
T Consensus 282 L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N--~l~~lp~~---~~~L~~L~L~~N~l~~lp~-- 354 (454)
T 1jl5_A 282 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN--KLIELPAL---PPRLERLIASFNHLAEVPE-- 354 (454)
T ss_dssp EECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS--CCSCCCCC---CTTCCEEECCSSCCSCCCC--
T ss_pred EECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC--cccccccc---CCcCCEEECCCCccccccc--
Confidence 44444444432210 00 11 24455555544 33334432 4667777777777777765
Q ss_pred hCCCCCcEEECcCCCCCCC
Q 012694 357 FRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 357 ~~l~~L~~L~L~~n~i~~~ 375 (458)
.+++|++|++++|++++.
T Consensus 355 -~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp -CCTTCCEEECCSSCCSSC
T ss_pred -hhhhccEEECCCCCCCcC
Confidence 467888888888888773
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=192.21 Aligned_cols=198 Identities=20% Similarity=0.213 Sum_probs=166.9
Q ss_pred CCceeEEEecCCCCC-ccchhh--CCCCCCcEEEcccCCCCcc----c-hhhcCCcccceeeeecCCCCCCc-hhhcCCC
Q 012694 149 GVVVETVDLADRQLK-LLPEAF--GRLRGLVSLNLSRNLLEAM----P-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLL 219 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~L~l~~n~i~~l----~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~ 219 (458)
.++|++|++++|.+. ..|..+ ..+++|++|++++|.++.. + ..+..+++|++|++++|.++.++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 466999999999998 455566 8899999999999999852 1 34567999999999999999875 6788999
Q ss_pred CccEEEeeCCCCCC---Cch--hhcCCCCCcEEEcCCCCCCcCCch---hhccCCCCCEEeccCCcCccC-CccccCC--
Q 012694 220 NLKVLNVSGNKLNT---LPE--SIARCSSLVELDASFNNLVCLPTN---IGYGLLNLERLSIKLNKLRTF-PPSICEM-- 288 (458)
Q Consensus 220 ~L~~L~l~~n~l~~---l~~--~l~~l~~L~~L~l~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~l-~~~l~~l-- 288 (458)
+|++|++++|++.. ++. .+..+++|++|++++|.++.++.. .+..+++|++|++++|.++.+ |..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999999763 332 336789999999999999876653 445789999999999999976 7777666
Q ss_pred -CCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCC
Q 012694 289 -RSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351 (458)
Q Consensus 289 -~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~ 351 (458)
++|++|++++|.++.+|..+. ++|++|+|++| .+..+|. +..+++|+.|++++|.|++
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N--~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN--RLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC--CCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC--cCCCCch-hhhCCCccEEECcCCCCCC
Confidence 699999999999999988764 89999999998 6667655 6788999999999999874
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=2.1e-21 Score=183.82 Aligned_cols=178 Identities=31% Similarity=0.503 Sum_probs=108.4
Q ss_pred CCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEec
Q 012694 194 GLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI 273 (458)
Q Consensus 194 ~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L 273 (458)
.+++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++...+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 3444444444444444432 2444445555555555444432 4445555555555555555555544445556666666
Q ss_pred cCCcCccCCcc-ccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCC
Q 012694 274 KLNKLRTFPPS-ICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIR 350 (458)
Q Consensus 274 ~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~ 350 (458)
++|.++.++.. +..+++|++|++++|.+++++. .+..+++|++|++++| .+..++. .++.+++|+.|++++|+++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN--QLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC--CcCccCHHHhcCCccCCEEECCCCcCC
Confidence 66666555433 4566677777777777776553 4567777777777776 4445543 3577788888888888888
Q ss_pred CCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694 351 ALP-DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 351 ~l~-~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
.++ ..+..+++|++|++++|++.+.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc
Confidence 775 3567888888888888888754
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=5.4e-21 Score=201.82 Aligned_cols=74 Identities=26% Similarity=0.393 Sum_probs=49.8
Q ss_pred cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694 305 PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPPMEIV 380 (458)
Q Consensus 305 ~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~~~~~ 380 (458)
|..+..+++|++|+|++| .+..+ |..++++++|++|+|++|+|+.++ ..+..+++|++|+|++|+++..++..+
T Consensus 487 ~~~~~~l~~L~~L~Ls~N--~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQC--QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp CSCCTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred chhhhhccccCEEECCCC--ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 345566677777777776 44554 455677777777777777777663 456777777777777777776655433
No 82
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.8e-21 Score=201.85 Aligned_cols=183 Identities=32% Similarity=0.445 Sum_probs=158.9
Q ss_pred CCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCC
Q 012694 173 RGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFN 252 (458)
Q Consensus 173 ~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n 252 (458)
.+|++|++++|.++.+|..+. ++|++|++++|.|+.+| ..+++|++|++++|+++.+|. +.+ +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 389999999999999987653 78999999999999998 467899999999999999887 655 9999999999
Q ss_pred CCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchh
Q 012694 253 NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332 (458)
Q Consensus 253 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~ 332 (458)
.++.+|. .+++|+.|++++|.++.+|. .+++|++|++++|.++++|. +. ++|+.|+|++| .+..+|.
T Consensus 131 ~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N--~L~~lp~- 197 (571)
T 3cvr_A 131 QLTMLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN--LLESLPA- 197 (571)
T ss_dssp CCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS--CCSSCCC-
T ss_pred cCCCCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC--CCCchhh-
Confidence 9999887 57899999999999999887 57899999999999999988 65 89999999998 6678887
Q ss_pred hcCCCCC-------CEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694 333 IGDLINL-------RELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 333 l~~l~~L-------~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
+.. +| +.|+|++|+|+.+|..+..+++|+.|+|++|++++..+.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 554 77 999999999999998888899999999999999865443
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=4.4e-21 Score=183.46 Aligned_cols=189 Identities=21% Similarity=0.262 Sum_probs=150.1
Q ss_pred EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCC
Q 012694 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233 (458)
Q Consensus 154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~ 233 (458)
.+.+.++.+..+. .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +.++++|++|++++|.++.
T Consensus 28 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 28 KDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred HHHhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence 3345566665443 2356788999999999998885 48889999999999999998876 8889999999999999888
Q ss_pred CchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCc
Q 012694 234 LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTR 313 (458)
Q Consensus 234 l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~ 313 (458)
++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+++++. +..+++
T Consensus 105 ~~~-l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~ 179 (291)
T 1h6t_A 105 LSS-LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTK 179 (291)
T ss_dssp GGG-GTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred Chh-hccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCc
Confidence 754 888889999999999888874 233688888888888888877 567788888888888888888766 778888
Q ss_pred ccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc
Q 012694 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP 353 (458)
Q Consensus 314 L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~ 353 (458)
|++|++++| .+..++. +..+++|+.|++++|.++..|
T Consensus 180 L~~L~L~~N--~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 180 LQNLYLSKN--HISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCEEECCSS--CCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred cCEEECCCC--cCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 888888887 5566653 777888888888888777654
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.6e-20 Score=175.51 Aligned_cols=176 Identities=28% Similarity=0.421 Sum_probs=125.7
Q ss_pred ccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC
Q 012694 197 KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL 275 (458)
Q Consensus 197 ~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~ 275 (458)
..++++++++.++.+|..+. ++|+.|++++|+++.++ ..+.++++|++|++++|.++.++...+..+++|+.|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34555555555555555443 45666666666665543 2456666666666666666666665555667777777777
Q ss_pred CcCccCCc-cccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCC
Q 012694 276 NKLRTFPP-SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRAL 352 (458)
Q Consensus 276 n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l 352 (458)
|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|+|++| .+..++. .++.+++|+.|+|++|+|+.+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC--cCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 77766553 45677788888888888887764 4677888888888887 5666665 578889999999999999988
Q ss_pred ch-hhhCCCCCcEEECcCCCCCCCc
Q 012694 353 PD-TFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 353 ~~-~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
+. .+..+++|++|++++|++.+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCc
Confidence 64 7888999999999999998763
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=1.1e-20 Score=180.69 Aligned_cols=165 Identities=22% Similarity=0.298 Sum_probs=107.3
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
++|+.|++++|.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|.++.++. +..+++|++|++++|
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence 45666677666666664 35666667777777766666654 6666667777777766666543 666666777777766
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG 309 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~ 309 (458)
+++.+ ..+..+++|++|++++|.++.++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.+++++. +.
T Consensus 123 ~i~~~-~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~ 197 (291)
T 1h6t_A 123 GISDI-NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LA 197 (291)
T ss_dssp CCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GT
T ss_pred cCCCC-hhhcCCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hc
Confidence 66665 34666666777777766666652 23356667777777666666644 6666667777777776666654 66
Q ss_pred CCCcccEEEccCC
Q 012694 310 KLTRLEVLNLSSN 322 (458)
Q Consensus 310 ~l~~L~~L~L~~n 322 (458)
.+++|+.|++++|
T Consensus 198 ~l~~L~~L~l~~n 210 (291)
T 1h6t_A 198 GLKNLDVLELFSQ 210 (291)
T ss_dssp TCTTCSEEEEEEE
T ss_pred cCCCCCEEECcCC
Confidence 6666777777665
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.8e-22 Score=198.54 Aligned_cols=224 Identities=20% Similarity=0.212 Sum_probs=179.2
Q ss_pred ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCc-----cchhhcCCcccceeeeecCCCCC----Cchhh------
Q 012694 151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEA-----MPDSIAGLQKLEELDVSSNLLQS----LPDSI------ 215 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~-----l~~~l~~l~~L~~L~L~~n~l~~----l~~~l------ 215 (458)
.++...+....+..++..+..+++|++|++++|.++. ++..+..+++|++|++++|.+.. +|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444444444555777788889999999999999984 34457899999999999986653 34443
Q ss_pred -cCCCCccEEEeeCCCCCC-----CchhhcCCCCCcEEEcCCCCCCcCCchhh----ccC---------CCCCEEeccCC
Q 012694 216 -GLLLNLKVLNVSGNKLNT-----LPESIARCSSLVELDASFNNLVCLPTNIG----YGL---------LNLERLSIKLN 276 (458)
Q Consensus 216 -~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~l~~~~~----~~l---------~~L~~L~L~~n 276 (458)
..+++|++|++++|.++. ++..+..+++|++|++++|.++......+ ..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 789999999999999986 67788999999999999999974432222 133 89999999999
Q ss_pred cCc--cCC---ccccCCCCCcEEEcccCCCCC------ccccccCCCcccEEEccCCCCC---CCccchhhcCCCCCCEE
Q 012694 277 KLR--TFP---PSICEMRSLKYLDAHFNELHG------LPRAIGKLTRLEVLNLSSNFND---LTELPETIGDLINLREL 342 (458)
Q Consensus 277 ~l~--~l~---~~l~~l~~L~~L~l~~n~l~~------l~~~l~~l~~L~~L~L~~n~~~---~~~l~~~l~~l~~L~~L 342 (458)
.++ .++ ..+..+++|++|++++|.++. ++..+..+++|++|+|++|... ...+|..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 997 344 467788999999999999983 3337889999999999998321 15677888999999999
Q ss_pred eccCCCCCC-----CchhhhC--CCCCcEEECcCCCCCC
Q 012694 343 DLSNNQIRA-----LPDTFFR--LENLTKLNLDQNPLVI 374 (458)
Q Consensus 343 ~L~~n~l~~-----l~~~l~~--l~~L~~L~L~~n~i~~ 374 (458)
+|++|+|+. ++..+.. +++|++|+|++|.++.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 999999985 3566644 9999999999999985
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=3.1e-20 Score=173.58 Aligned_cols=170 Identities=27% Similarity=0.404 Sum_probs=117.6
Q ss_pred ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeC
Q 012694 151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSG 228 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~ 228 (458)
..++++++++.++.+|..+. +++++|++++|.++.++. .+.++++|++|++++|.++.++ ..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45677888888877776554 577788888887776653 5777777778888777777664 3467777777777777
Q ss_pred CCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCccc
Q 012694 229 NKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR 306 (458)
Q Consensus 229 n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~ 306 (458)
|+++.++ ..+..+++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.+++++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 7777665 345667777777777777777776666566777777777777766654 45666667777777776666543
Q ss_pred -cccCCCcccEEEccCC
Q 012694 307 -AIGKLTRLEVLNLSSN 322 (458)
Q Consensus 307 -~l~~l~~L~~L~L~~n 322 (458)
.+..+++|++|++++|
T Consensus 173 ~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTTTTCTTCCEEECCSC
T ss_pred HHHhCCCCCCEEEeeCC
Confidence 5566666666666666
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.5e-21 Score=190.18 Aligned_cols=216 Identities=19% Similarity=0.257 Sum_probs=131.9
Q ss_pred eeEEEecCCCCCccchhhCCC--CCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCC--CchhhcCCCCccEEEee
Q 012694 152 VETVDLADRQLKLLPEAFGRL--RGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS--LPDSIGLLLNLKVLNVS 227 (458)
Q Consensus 152 L~~L~l~~~~l~~l~~~~~~l--~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~l~ 227 (458)
++.++++++.+. +..+..+ ++++.|++++|.++..+..+..+++|++|++++|.++. ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 566677666655 3344444 56777777777666555555566777777777776653 55566667777777777
Q ss_pred CCCCC-CCchhhcCCCCCcEEEcCCC-CCCc--CCchhhccCCCCCEEeccCC-cCcc--CCccccCCC-CCcEEEcccC
Q 012694 228 GNKLN-TLPESIARCSSLVELDASFN-NLVC--LPTNIGYGLLNLERLSIKLN-KLRT--FPPSICEMR-SLKYLDAHFN 299 (458)
Q Consensus 228 ~n~l~-~l~~~l~~l~~L~~L~l~~n-~l~~--l~~~~~~~l~~L~~L~L~~n-~l~~--l~~~l~~l~-~L~~L~l~~n 299 (458)
+|.++ ..+..+..+++|++|++++| .++. ++ ..+..+++|++|++++| .++. ++..+..++ +|++|++++|
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 77666 34556666777777777776 4553 22 22335667777777777 6663 455566666 7777777777
Q ss_pred --CCC--CccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCC-CCCC-chhhhCCCCCcEEECcCC
Q 012694 300 --ELH--GLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQ-IRAL-PDTFFRLENLTKLNLDQN 370 (458)
Q Consensus 300 --~l~--~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~-l~~l-~~~l~~l~~L~~L~L~~n 370 (458)
.++ .++..+..+++|++|++++|..-....+..+..+++|+.|++++|. ++.. ...+.++++|++|++++|
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 343 2555566677777777777621112334456666777777777773 3211 124566777777777766
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.7e-21 Score=192.19 Aligned_cols=225 Identities=20% Similarity=0.252 Sum_probs=175.3
Q ss_pred CCceeEEEecCCCCCccc-----hhhCCCC-CCcEEEcccCCCCcc-chhhcCC-----cccceeeeecCCCCCCc-h--
Q 012694 149 GVVVETVDLADRQLKLLP-----EAFGRLR-GLVSLNLSRNLLEAM-PDSIAGL-----QKLEELDVSSNLLQSLP-D-- 213 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~-----~~~~~l~-~L~~L~l~~n~i~~l-~~~l~~l-----~~L~~L~L~~n~l~~l~-~-- 213 (458)
.++|++|++++|.++..+ ..+..++ +|++|++++|.++.. +..+..+ ++|++|++++|.++..+ .
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 456999999999998665 5788888 999999999999865 3445543 99999999999998653 2
Q ss_pred --hhcCC-CCccEEEeeCCCCCCCch-----hhcC-CCCCcEEEcCCCCCCcCCchh----hccCC-CCCEEeccCCcCc
Q 012694 214 --SIGLL-LNLKVLNVSGNKLNTLPE-----SIAR-CSSLVELDASFNNLVCLPTNI----GYGLL-NLERLSIKLNKLR 279 (458)
Q Consensus 214 --~l~~l-~~L~~L~l~~n~l~~l~~-----~l~~-l~~L~~L~l~~n~l~~l~~~~----~~~l~-~L~~L~L~~n~l~ 279 (458)
.+..+ ++|++|++++|+++..+. .+.. .++|++|++++|.++...... +..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 25555 899999999999986542 2444 469999999999998433221 12444 9999999999998
Q ss_pred cCC-----ccccCC-CCCcEEEcccCCCCC-----ccccccC-CCcccEEEccCCCCCCCcc-----chhhcCCCCCCEE
Q 012694 280 TFP-----PSICEM-RSLKYLDAHFNELHG-----LPRAIGK-LTRLEVLNLSSNFNDLTEL-----PETIGDLINLREL 342 (458)
Q Consensus 280 ~l~-----~~l~~l-~~L~~L~l~~n~l~~-----l~~~l~~-l~~L~~L~L~~n~~~~~~l-----~~~l~~l~~L~~L 342 (458)
... ..+..+ ++|++|++++|.+++ ++..+.. .++|++|+|++|. ++.. ...+..+++|+.|
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC--LHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC--CCCCCHHHHHHTTTTTTTCSEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC--CCcHHHHHHHHHHhcCCCccEE
Confidence 554 245555 599999999999998 6666666 4599999999984 4443 3345778999999
Q ss_pred eccCCCCCCCc--------hhhhCCCCCcEEECcCCCCCCC
Q 012694 343 DLSNNQIRALP--------DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 343 ~L~~n~l~~l~--------~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
++++|.++.+. ..+..+++|++|++++|++...
T Consensus 259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99999855443 3567788999999999999865
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=2.1e-21 Score=189.17 Aligned_cols=225 Identities=19% Similarity=0.198 Sum_probs=180.5
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCc--cchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEEEe
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLNV 226 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~--l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l 226 (458)
..++.|++++|.+...+..+..+++|++|++++|.++. ++..+..+++|++|++++|.++ ..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 56999999999998776667789999999999999874 7778999999999999999988 45778889999999999
Q ss_pred eCC-CCC--CCchhhcCCCCCcEEEcCCC-CCCcC-CchhhccCC-CCCEEeccCCc--C--ccCCccccCCCCCcEEEc
Q 012694 227 SGN-KLN--TLPESIARCSSLVELDASFN-NLVCL-PTNIGYGLL-NLERLSIKLNK--L--RTFPPSICEMRSLKYLDA 296 (458)
Q Consensus 227 ~~n-~l~--~l~~~l~~l~~L~~L~l~~n-~l~~l-~~~~~~~l~-~L~~L~L~~n~--l--~~l~~~l~~l~~L~~L~l 296 (458)
++| .++ .++..+..+++|++|++++| .++.. .......++ +|++|++++|. + ..++..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 999 787 36777888999999999999 88853 123344789 99999999995 4 356677788999999999
Q ss_pred ccCC-CCC-ccccccCCCcccEEEccCCCCCCC-ccchhhcCCCCCCEEeccCCCCCCCchhhhCC-CCCcEEECcCCCC
Q 012694 297 HFNE-LHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLINLRELDLSNNQIRALPDTFFRL-ENLTKLNLDQNPL 372 (458)
Q Consensus 297 ~~n~-l~~-l~~~l~~l~~L~~L~L~~n~~~~~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l-~~L~~L~L~~n~i 372 (458)
++|. +++ .+..+..+++|++|++++|. .+. .....++.+++|+.|++++| ++.- .+..+ .++..|++++|.+
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecccC
Confidence 9999 654 56678999999999999983 221 11135788999999999999 5531 22222 2366667899999
Q ss_pred CCCcHH
Q 012694 373 VIPPME 378 (458)
Q Consensus 373 ~~~~~~ 378 (458)
++..+.
T Consensus 306 ~~~~~~ 311 (336)
T 2ast_B 306 TTIARP 311 (336)
T ss_dssp CCTTCS
T ss_pred ccccCC
Confidence 876543
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=1.3e-20 Score=185.95 Aligned_cols=223 Identities=21% Similarity=0.201 Sum_probs=174.6
Q ss_pred EEEecCCCCCc-cchhhCCCCCCcEEEcccCCCCccc-----hhhcCCc-ccceeeeecCCCCCC-chhhcCC-----CC
Q 012694 154 TVDLADRQLKL-LPEAFGRLRGLVSLNLSRNLLEAMP-----DSIAGLQ-KLEELDVSSNLLQSL-PDSIGLL-----LN 220 (458)
Q Consensus 154 ~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~i~~l~-----~~l~~l~-~L~~L~L~~n~l~~l-~~~l~~l-----~~ 220 (458)
.+.++.|.++. +|..+....+|++|++++|.++..+ ..+.+++ +|++|++++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788888884 4555555666999999999999765 5788898 999999999999865 4445443 99
Q ss_pred ccEEEeeCCCCCCCch-----hhcCC-CCCcEEEcCCCCCCcCCchhhc----c-CCCCCEEeccCCcCc-----cCCcc
Q 012694 221 LKVLNVSGNKLNTLPE-----SIARC-SSLVELDASFNNLVCLPTNIGY----G-LLNLERLSIKLNKLR-----TFPPS 284 (458)
Q Consensus 221 L~~L~l~~n~l~~l~~-----~l~~l-~~L~~L~l~~n~l~~l~~~~~~----~-l~~L~~L~L~~n~l~-----~l~~~ 284 (458)
|++|++++|.++..+. .+..+ ++|++|++++|.++..+...+. . .++|++|++++|.++ .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999985532 35556 8999999999999987754332 2 369999999999998 44455
Q ss_pred ccCCC-CCcEEEcccCCCCCcc-----ccccCC-CcccEEEccCCCCCCCc-----cchhhcC-CCCCCEEeccCCCCCC
Q 012694 285 ICEMR-SLKYLDAHFNELHGLP-----RAIGKL-TRLEVLNLSSNFNDLTE-----LPETIGD-LINLRELDLSNNQIRA 351 (458)
Q Consensus 285 l~~l~-~L~~L~l~~n~l~~l~-----~~l~~l-~~L~~L~L~~n~~~~~~-----l~~~l~~-l~~L~~L~L~~n~l~~ 351 (458)
+..++ +|++|++++|.+++.. ..+..+ ++|++|+|++| .++. ++..+.. .++|++|+|++|.|+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 56665 9999999999998743 245566 59999999998 4444 5666655 4699999999999997
Q ss_pred Cc-----hhhhCCCCCcEEECcCCCCCCCcHH
Q 012694 352 LP-----DTFFRLENLTKLNLDQNPLVIPPME 378 (458)
Q Consensus 352 l~-----~~l~~l~~L~~L~L~~n~i~~~~~~ 378 (458)
.+ ..+..+++|++|++++|.+......
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 64 3456789999999999997766554
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=7.6e-20 Score=179.52 Aligned_cols=215 Identities=24% Similarity=0.290 Sum_probs=158.5
Q ss_pred CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCC-ccc-hhhcCCcccce-eeeecCCCCCC-chhhcCCCCccEE
Q 012694 150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLE-AMP-DSIAGLQKLEE-LDVSSNLLQSL-PDSIGLLLNLKVL 224 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~-~l~-~~l~~l~~L~~-L~L~~n~l~~l-~~~l~~l~~L~~L 224 (458)
+++++|+|++|.|+.+|. .|..+++|++|+|++|.+. .++ ..|.+++++.+ +.+.+|+++.+ |..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 468888888888888876 5788888888888888874 454 35777777665 55666788877 4567888888888
Q ss_pred EeeCCCCCCCch-hhcCCCCCcEEEcCC-CCCCcCCchhhccCC-CCCEEeccCCcCccCCccccCCCCCcEEEcc-cCC
Q 012694 225 NVSGNKLNTLPE-SIARCSSLVELDASF-NNLVCLPTNIGYGLL-NLERLSIKLNKLRTFPPSICEMRSLKYLDAH-FNE 300 (458)
Q Consensus 225 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~-n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~-~n~ 300 (458)
++++|+++.++. .+....++..|++.+ +.+..++...+..+. .++.|++++|+++.++.......+|++|++. +|.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 888888887654 344456677777754 567777776655554 5788888888888887777777788888886 467
Q ss_pred CCCccc-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCC-CCCCCchhhhCCCCCcEEECcC
Q 012694 301 LHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNN-QIRALPDTFFRLENLTKLNLDQ 369 (458)
Q Consensus 301 l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~L~~ 369 (458)
++.+|. .|..+++|++|++++| .+..+|.. .+.+|+.|.+.++ +++.+| .+..+++|+.+++.+
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N--~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRT--RIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTS--CCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ccCCCHHHhccCcccchhhcCCC--CcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 777774 5688888888888887 66777653 3566777766655 677776 477788888888864
No 93
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=8.4e-21 Score=193.00 Aligned_cols=234 Identities=19% Similarity=0.205 Sum_probs=152.8
Q ss_pred hccCCCceeEEEecCCCCCcc-ch-hhCCCC----CCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCCCC-c
Q 012694 145 EAESGVVVETVDLADRQLKLL-PE-AFGRLR----GLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQSL-P 212 (458)
Q Consensus 145 ~~~~~~~L~~L~l~~~~l~~l-~~-~~~~l~----~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~l-~ 212 (458)
.+..+++|++|++++|.+... +. .+..+. +|++|++++|.++ .++..+..+++|++|++++|.++.. +
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 344567788888888877632 21 222343 5888888888777 3456677788888888888877632 1
Q ss_pred h----h-hcCCCCccEEEeeCCCCCC-----CchhhcCCCCCcEEEcCCCCCCcCCc-----hhhccCCCCCEEeccCCc
Q 012694 213 D----S-IGLLLNLKVLNVSGNKLNT-----LPESIARCSSLVELDASFNNLVCLPT-----NIGYGLLNLERLSIKLNK 277 (458)
Q Consensus 213 ~----~-l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~l~~-----~~~~~l~~L~~L~L~~n~ 277 (458)
. . ....++|++|++++|+++. ++..+..+++|++|++++|.++.... ......++|++|++++|.
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 1 2 1235578888888887773 34556667788888888887764322 122235578888888887
Q ss_pred Ccc-----CCccccCCCCCcEEEcccCCCCCc------cccccCCCcccEEEccCCCCCCCc-----cchhhcCCCCCCE
Q 012694 278 LRT-----FPPSICEMRSLKYLDAHFNELHGL------PRAIGKLTRLEVLNLSSNFNDLTE-----LPETIGDLINLRE 341 (458)
Q Consensus 278 l~~-----l~~~l~~l~~L~~L~l~~n~l~~l------~~~l~~l~~L~~L~L~~n~~~~~~-----l~~~l~~l~~L~~ 341 (458)
++. ++..+..+++|++|++++|.+++. +..+..+++|++|++++| .++. ++..+..+++|++
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC--GITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS--CCCHHHHHHHHHHHHHCTTCCE
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC--CCCHHHHHHHHHHHhhCCCcce
Confidence 774 456667778888888888877662 222335778888888887 4444 5666677788888
Q ss_pred EeccCCCCCCC-----chhhh-CCCCCcEEECcCCCCCCCcHHHH
Q 012694 342 LDLSNNQIRAL-----PDTFF-RLENLTKLNLDQNPLVIPPMEIV 380 (458)
Q Consensus 342 L~L~~n~l~~l-----~~~l~-~l~~L~~L~L~~n~i~~~~~~~~ 380 (458)
|++++|.|+.. ...+. ..++|++|++++|.++......+
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 88888877632 12222 23688888888888776544333
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=4.2e-20 Score=193.48 Aligned_cols=191 Identities=21% Similarity=0.263 Sum_probs=166.9
Q ss_pred eeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCC
Q 012694 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231 (458)
Q Consensus 152 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l 231 (458)
+..+.+..+.+..+.. +..+.+|+.|++++|.+..++ .+..+++|++|+|++|.++.++. +..+++|+.|+|++|.+
T Consensus 23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 4445566666665543 467789999999999999986 58999999999999999999876 89999999999999999
Q ss_pred CCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCC
Q 012694 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKL 311 (458)
Q Consensus 232 ~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l 311 (458)
+.++ .+..+++|++|++++|.+..++. +..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.+.+++. +..+
T Consensus 100 ~~l~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l 174 (605)
T 1m9s_A 100 KDLS-SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGL 174 (605)
T ss_dssp CCCT-TSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred CCCh-hhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccC
Confidence 9886 78899999999999999998753 44799999999999999988 678999999999999999999877 8999
Q ss_pred CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc
Q 012694 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP 353 (458)
Q Consensus 312 ~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~ 353 (458)
++|+.|+|++| .+..++ .+..+++|+.|+|++|.++..|
T Consensus 175 ~~L~~L~Ls~N--~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 175 TKLQNLYLSKN--HISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCCEEECCSS--CCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCEEECcCC--CCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 99999999998 566774 5889999999999999988664
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.5e-19 Score=177.45 Aligned_cols=219 Identities=24% Similarity=0.265 Sum_probs=177.9
Q ss_pred eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCC-Cc-hhhcCCCCccE-EEeeC
Q 012694 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQS-LP-DSIGLLLNLKV-LNVSG 228 (458)
Q Consensus 153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~-l~-~~l~~l~~L~~-L~l~~ 228 (458)
+++++++++++.+|..+. +++++|+|++|+|+.+|. +|.++++|++|+|++|.+.+ +| ..|.++++|+. +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 578999999999998763 689999999999999985 58999999999999999754 55 46788888765 66678
Q ss_pred CCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC-CcCccCCc-cccCC-CCCcEEEcccCCCCCc
Q 012694 229 NKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL-NKLRTFPP-SICEM-RSLKYLDAHFNELHGL 304 (458)
Q Consensus 229 n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l-~~L~~L~l~~n~l~~l 304 (458)
|+++.++ ..+..+++|++|++++|.++.++...+....++..|++.+ +.+..++. .+..+ ..++.|++++|+|+.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 9999884 5688999999999999999999887776777888999865 57887764 34444 4689999999999999
Q ss_pred cccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCC-CCCCCc
Q 012694 305 PRAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN-PLVIPP 376 (458)
Q Consensus 305 ~~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n-~i~~~~ 376 (458)
+.......+|+.|++++| +.++.+|. .+..+++|+.|++++|+|+.+|.. .+.+|+.|.+.++ .++..|
T Consensus 170 ~~~~f~~~~L~~l~l~~~-n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDN-NNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp CTTSSTTEEEEEEECTTC-TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC
T ss_pred ChhhccccchhHHhhccC-CcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC
Confidence 887777789999999875 47788885 478999999999999999999752 2456666665543 344433
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=7.8e-21 Score=193.26 Aligned_cols=225 Identities=22% Similarity=0.226 Sum_probs=173.7
Q ss_pred ceeEEEecCCCCC-----ccchhhCCCCCCcEEEcccCCCCcc-----chh-hcCCcccceeeeecCCCCC-----Cchh
Q 012694 151 VVETVDLADRQLK-----LLPEAFGRLRGLVSLNLSRNLLEAM-----PDS-IAGLQKLEELDVSSNLLQS-----LPDS 214 (458)
Q Consensus 151 ~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i~~l-----~~~-l~~l~~L~~L~L~~n~l~~-----l~~~ 214 (458)
+|++|++++|.++ .++..+..+++|++|++++|.++.. ... ....++|++|++++|.++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 6999999999998 4577899999999999999998743 122 2235689999999999885 4566
Q ss_pred hcCCCCccEEEeeCCCCCCC-----chhhc-CCCCCcEEEcCCCCCCcCC----chhhccCCCCCEEeccCCcCccC---
Q 012694 215 IGLLLNLKVLNVSGNKLNTL-----PESIA-RCSSLVELDASFNNLVCLP----TNIGYGLLNLERLSIKLNKLRTF--- 281 (458)
Q Consensus 215 l~~l~~L~~L~l~~n~l~~l-----~~~l~-~l~~L~~L~l~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~~l--- 281 (458)
+..+++|++|++++|.++.. ...+. ..++|++|++++|.++... ...+..+++|++|++++|.++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 77889999999999998742 12222 3669999999999998642 22334789999999999988742
Q ss_pred --Ccc-ccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCCc-----cchhhc-CCCCCCEEeccCC
Q 012694 282 --PPS-ICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLTE-----LPETIG-DLINLRELDLSNN 347 (458)
Q Consensus 282 --~~~-l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~-----l~~~l~-~l~~L~~L~L~~n 347 (458)
... ...+++|++|++++|.+++ ++..+..+++|++|++++| .+.. +...+. ..++|++|++++|
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN--ELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC--CCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC--CCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 222 2358899999999999988 6777888999999999998 3332 222222 3369999999999
Q ss_pred CCCC-----CchhhhCCCCCcEEECcCCCCCCCcH
Q 012694 348 QIRA-----LPDTFFRLENLTKLNLDQNPLVIPPM 377 (458)
Q Consensus 348 ~l~~-----l~~~l~~l~~L~~L~L~~n~i~~~~~ 377 (458)
.++. ++..+..+++|++|++++|.++....
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 9984 35677888999999999998865433
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=9.1e-20 Score=190.97 Aligned_cols=166 Identities=22% Similarity=0.293 Sum_probs=152.5
Q ss_pred CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694 149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG 228 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~ 228 (458)
++.|+.|++++|.+..++ .+..+++|+.|+|++|.++.+++ +..+++|++|+|++|.++.++ .+..+++|+.|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 467999999999999887 58899999999999999999876 999999999999999999986 689999999999999
Q ss_pred CCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccc
Q 012694 229 NKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAI 308 (458)
Q Consensus 229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l 308 (458)
|.++.++ .+..+++|+.|++++|.++.+ ..+..+++|+.|+|++|.++.++. +..+++|+.|+|++|.+++++ .+
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HH
Confidence 9999884 688999999999999999988 344589999999999999998866 899999999999999999986 58
Q ss_pred cCCCcccEEEccCC
Q 012694 309 GKLTRLEVLNLSSN 322 (458)
Q Consensus 309 ~~l~~L~~L~L~~n 322 (458)
..+++|+.|+|++|
T Consensus 194 ~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 194 AGLKNLDVLELFSQ 207 (605)
T ss_dssp TTCTTCSEEECCSE
T ss_pred ccCCCCCEEEccCC
Confidence 99999999999998
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=3.6e-20 Score=174.41 Aligned_cols=171 Identities=27% Similarity=0.372 Sum_probs=122.5
Q ss_pred CCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCC
Q 012694 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF 251 (458)
Q Consensus 172 l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~ 251 (458)
+.++..++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++.++. +..+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 345666777777777776 5677778888888888887776 57777888888888888877765 77777888888888
Q ss_pred CCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccch
Q 012694 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331 (458)
Q Consensus 252 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~ 331 (458)
|.++.++.... ++|+.|++++|.++.++ .+..+++|++|++++|.+++++ .+..+++|++|++++| .+..+ .
T Consensus 95 N~l~~l~~~~~---~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N--~i~~~-~ 166 (263)
T 1xeu_A 95 NRLKNLNGIPS---ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN--EITNT-G 166 (263)
T ss_dssp SCCSCCTTCCC---SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS--CCCBC-T
T ss_pred CccCCcCcccc---CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC--cCcch-H
Confidence 87777664322 67777777777777664 4667777777777777777765 4667777777777776 44444 4
Q ss_pred hhcCCCCCCEEeccCCCCCCCc
Q 012694 332 TIGDLINLRELDLSNNQIRALP 353 (458)
Q Consensus 332 ~l~~l~~L~~L~L~~n~l~~l~ 353 (458)
.+..+++|+.|++++|.++..|
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECCC
T ss_pred HhccCCCCCEEeCCCCcccCCc
Confidence 5666777777777777766554
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=4e-20 Score=174.10 Aligned_cols=163 Identities=25% Similarity=0.303 Sum_probs=120.6
Q ss_pred ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCC
Q 012694 151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK 230 (458)
Q Consensus 151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~ 230 (458)
++..++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|+
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 3556667777777666 4666777888888888777776 57777888888888888777765 7777888888888887
Q ss_pred CCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccC
Q 012694 231 LNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGK 310 (458)
Q Consensus 231 l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~ 310 (458)
++.++.. .. ++|++|++++|.++.++. +..+++|+.|++++|.++.++ .+..+++|++|++++|.++++ ..+..
T Consensus 97 l~~l~~~-~~-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~ 170 (263)
T 1xeu_A 97 LKNLNGI-PS-ACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTR 170 (263)
T ss_dssp CSCCTTC-CC-SSCCEEECCSSCCSBSGG--GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred cCCcCcc-cc-CcccEEEccCCccCCChh--hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhcc
Confidence 7776543 22 778888888887777653 346777888888888877774 577777888888888887777 55777
Q ss_pred CCcccEEEccCC
Q 012694 311 LTRLEVLNLSSN 322 (458)
Q Consensus 311 l~~L~~L~L~~n 322 (458)
+++|+.|++++|
T Consensus 171 l~~L~~L~l~~N 182 (263)
T 1xeu_A 171 LKKVNWIDLTGQ 182 (263)
T ss_dssp CCCCCEEEEEEE
T ss_pred CCCCCEEeCCCC
Confidence 778888888776
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=6.3e-19 Score=159.70 Aligned_cols=176 Identities=26% Similarity=0.316 Sum_probs=92.0
Q ss_pred EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCC
Q 012694 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLN 232 (458)
Q Consensus 154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~ 232 (458)
.++++++.++.+|..+ .++|++|++++|.++.++. .+.++++|++|++++|.++.++..
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------ 70 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG------------------ 70 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------------
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh------------------
Confidence 4455555555554332 2355555555555554443 244555555555555555544322
Q ss_pred CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEcccCCCCCccc-cccC
Q 012694 233 TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-ICEMRSLKYLDAHFNELHGLPR-AIGK 310 (458)
Q Consensus 233 ~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~-~l~~ 310 (458)
.+..+++|++|++++|.++.++...+..+++|+.|++++|.++.++.. +..+++|++|++++|.+++++. .+..
T Consensus 71 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 71 ----VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ----hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 233444444444444444444444444455555555555555544432 4555666666666666666543 3556
Q ss_pred CCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCC
Q 012694 311 LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLEN 361 (458)
Q Consensus 311 l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~ 361 (458)
+++|++|++++|. ..+.+++|+.|+++.|+++ .+|..++.++.
T Consensus 147 l~~L~~L~l~~N~--------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 147 LTSLQYIWLHDNP--------WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTCCEEECCSCC--------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCccEEEecCCC--------eecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 6666666666651 1234556667777777666 55655555543
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.4e-18 Score=183.15 Aligned_cols=226 Identities=28% Similarity=0.299 Sum_probs=175.3
Q ss_pred CCCceeEEEecCCCCCccch--------------------hhCCCCCCcEEEcccCCCCc---cchhhcCCcccceeeee
Q 012694 148 SGVVVETVDLADRQLKLLPE--------------------AFGRLRGLVSLNLSRNLLEA---MPDSIAGLQKLEELDVS 204 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~--------------------~~~~l~~L~~L~l~~n~i~~---l~~~l~~l~~L~~L~L~ 204 (458)
....++.|++.++.+..++. ....+++|+.|++++|.+.. .+..+..+.+|++|++.
T Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~ 405 (635)
T 4g8a_A 326 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405 (635)
T ss_dssp SCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred cchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence 34567777777776554322 12235566666666666652 23445566677777777
Q ss_pred cCCCCCCchhhcCCCCccEEEeeCCCCCCC--chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc--c
Q 012694 205 SNLLQSLPDSIGLLLNLKVLNVSGNKLNTL--PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR--T 280 (458)
Q Consensus 205 ~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l--~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~--~ 280 (458)
.+.+..++..+..+++|+.+++.++..... ...+..+++++.++++.|.+..+....+..+++|+.|++++|.+. .
T Consensus 406 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~ 485 (635)
T 4g8a_A 406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485 (635)
T ss_dssp SCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc
Confidence 776666666667778888888877755533 245677899999999999999888888889999999999999754 3
Q ss_pred CCccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCC-chhhh
Q 012694 281 FPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRAL-PDTFF 357 (458)
Q Consensus 281 l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~ 357 (458)
.|..+..+++|++|++++|+++++ |..+.++++|++|+|++| .+..++ ..+..+++|+.|+|++|+|+.+ |..+.
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N--~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN--NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS--CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC--cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence 577889999999999999999996 568999999999999998 566664 5688999999999999999977 56788
Q ss_pred CC-CCCcEEECcCCCCCCC
Q 012694 358 RL-ENLTKLNLDQNPLVIP 375 (458)
Q Consensus 358 ~l-~~L~~L~L~~n~i~~~ 375 (458)
.+ ++|++|+|++|++.+.
T Consensus 564 ~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 564 HFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCCTTCCEEECTTCCBCCS
T ss_pred hhhCcCCEEEeeCCCCccc
Confidence 87 6899999999999864
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.6e-18 Score=155.78 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=77.5
Q ss_pred CCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCC-CchhhcCCCCCcEEEc
Q 012694 171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT-LPESIARCSSLVELDA 249 (458)
Q Consensus 171 ~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l 249 (458)
.+++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++. .+..+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3455666666666666555 4556666666666666555543 45556666666666666553 3445555555555555
Q ss_pred CCCCCCcCCchhhccCCCCCEEeccCCc-CccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCC
Q 012694 250 SFNNLVCLPTNIGYGLLNLERLSIKLNK-LRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN 322 (458)
Q Consensus 250 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n 322 (458)
++|.++......+..+++|++|++++|. ++.++ .+..+++|++|++++|.+++++ .+..+++|++|++++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 5555554322333344455555555544 44443 3444445555555555554443 3444444444544444
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=3.5e-21 Score=200.43 Aligned_cols=193 Identities=21% Similarity=0.275 Sum_probs=118.7
Q ss_pred CCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCC-------------CC-CCchhhcCCCCccEEE-eeCCCCCCC
Q 012694 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNL-------------LQ-SLPDSIGLLLNLKVLN-VSGNKLNTL 234 (458)
Q Consensus 170 ~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~-------------l~-~l~~~l~~l~~L~~L~-l~~n~l~~l 234 (458)
..+++|+.|++++|.++.+|..++++++|++|++++|. +. .+|..++.+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45677888888888888888888888888888876653 12 2345566667777776 454443322
Q ss_pred ch------hhcC--CCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccc
Q 012694 235 PE------SIAR--CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR 306 (458)
Q Consensus 235 ~~------~l~~--l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~ 306 (458)
+. .+.. ...|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|++|++++|.++++|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence 21 1111 1246666666666666654 33566666666666666666666666666666666666666665
Q ss_pred cccCCCcccEEEccCCCCCCCcc--chhhcCCCCCCEEeccCCCCCCCch----hhhCCCCCcEEEC
Q 012694 307 AIGKLTRLEVLNLSSNFNDLTEL--PETIGDLINLRELDLSNNQIRALPD----TFFRLENLTKLNL 367 (458)
Q Consensus 307 ~l~~l~~L~~L~L~~n~~~~~~l--~~~l~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~L 367 (458)
.++.+++|+.|+|++| .+..+ |..++.+++|+.|+|++|.|+.+|+ .+..+++|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N--~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNN--RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSS--CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCC--CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5666666666666665 44444 5666666666666666666665542 2233566666643
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.5e-18 Score=155.85 Aligned_cols=152 Identities=20% Similarity=0.271 Sum_probs=94.2
Q ss_pred cCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEe
Q 012694 193 AGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272 (458)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~ 272 (458)
..+++|++|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++ |++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~------------------------L~~L~ 94 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSN------------------------LERLR 94 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTT------------------------CCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCC------------------------CCEEE
Confidence 44555666666666666555 4555666666666666554442 3444444 45555
Q ss_pred ccCCcCcc-CCccccCCCCCcEEEcccCCCCC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC
Q 012694 273 IKLNKLRT-FPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR 350 (458)
Q Consensus 273 L~~n~l~~-l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~ 350 (458)
+++|.++. .+..+..+++|++|++++|.+++ .+..+..+++|++|++++|. .+..++ .+..+++|+.|++++|+|+
T Consensus 95 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT-BCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred eECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC-CccccH-hhcCCCCCCEEECCCCCCc
Confidence 55554442 34455666677777777777765 44566777777777777762 255555 5677777788888877777
Q ss_pred CCchhhhCCCCCcEEECcCCCCC
Q 012694 351 ALPDTFFRLENLTKLNLDQNPLV 373 (458)
Q Consensus 351 ~l~~~l~~l~~L~~L~L~~n~i~ 373 (458)
.++ .+..+++|++|++++|+|.
T Consensus 173 ~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 173 DYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCT-TGGGCSSCCEEEECBC---
T ss_pred ChH-HhccCCCCCEEEeeCcccC
Confidence 775 6777778888888887765
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.9e-18 Score=156.57 Aligned_cols=159 Identities=29% Similarity=0.462 Sum_probs=135.0
Q ss_pred CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccchh-hcCCcccceeeeecCCCCCCch-hhcCCCCccEEE
Q 012694 149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLN 225 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~ 225 (458)
.+++++|++++|.++.++. .|..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 3579999999999998876 578999999999999999988754 7899999999999999998865 468899999999
Q ss_pred eeCCCCCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCC-
Q 012694 226 VSGNKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG- 303 (458)
Q Consensus 226 l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~- 303 (458)
+++|+++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|.+. +.+++|++|+++.|.+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCce
Confidence 999999988654 688999999999999999888877778889999999988654 455678888888888886
Q ss_pred ccccccCCCc
Q 012694 304 LPRAIGKLTR 313 (458)
Q Consensus 304 l~~~l~~l~~ 313 (458)
+|..++.++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 7766665543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.7e-18 Score=170.59 Aligned_cols=153 Identities=27% Similarity=0.365 Sum_probs=89.4
Q ss_pred ccEEEeeCCCCCCCchh-hc-CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcc
Q 012694 221 LKVLNVSGNKLNTLPES-IA-RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAH 297 (458)
Q Consensus 221 L~~L~l~~n~l~~l~~~-l~-~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~ 297 (458)
++.|++++|+++.++.. +. ++++|++|++++|.++.++...+.++++|+.|++++|.++.++. .+..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444433322 22 34444444444444444444444445555555555555554432 34555566666666
Q ss_pred cCCCCCc-cccccCCCcccEEEccCCCCCCCccchhh----cCCCCCCEEeccCCCCCCCc-hhhhCCCC--CcEEECcC
Q 012694 298 FNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELPETI----GDLINLRELDLSNNQIRALP-DTFFRLEN--LTKLNLDQ 369 (458)
Q Consensus 298 ~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l----~~l~~L~~L~L~~n~l~~l~-~~l~~l~~--L~~L~L~~ 369 (458)
+|.++.+ +..+..+++|+.|+|++| .+..+|..+ ..+++|+.|+|++|+|+.+| ..+..++. ++.|+|++
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQN--QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS--CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCcccEECHHHhCCcccCCEEECCCC--cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 6666654 345666666666666665 455555443 46788899999999998886 46777776 48899999
Q ss_pred CCCCCC
Q 012694 370 NPLVIP 375 (458)
Q Consensus 370 n~i~~~ 375 (458)
|++.+.
T Consensus 199 N~~~C~ 204 (361)
T 2xot_A 199 NPLECD 204 (361)
T ss_dssp SCEECC
T ss_pred CCccCC
Confidence 999865
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.3e-17 Score=153.48 Aligned_cols=152 Identities=29% Similarity=0.387 Sum_probs=112.8
Q ss_pred ccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccC
Q 012694 221 LKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFN 299 (458)
Q Consensus 221 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n 299 (458)
.+.++.++++++.+|..+. ++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4455555555655554432 566666666666666655555566677777777777766653 3567778888888888
Q ss_pred CCCCccc-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCc
Q 012694 300 ELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 300 ~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
.++.++. .+..+++|++|++++| .+..+|..+..+++|+.|+|++|+|+.++ ..+..+++|+.|++++|++.+..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS--CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccChhHhCcchhhCeEeccCC--cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 8888764 4678888999999887 66688888888999999999999999886 46888999999999999998654
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.7e-20 Score=195.34 Aligned_cols=193 Identities=20% Similarity=0.235 Sum_probs=160.6
Q ss_pred cCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCC--------------CCccchhhcCCcccceee-eecCCCCCC
Q 012694 147 ESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNL--------------LEAMPDSIAGLQKLEELD-VSSNLLQSL 211 (458)
Q Consensus 147 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~--------------i~~l~~~l~~l~~L~~L~-L~~n~l~~l 211 (458)
...+.|+.|++++|.++.+|..++.+++|+.|++++|. .+.+|..++.+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34677889999999999999999999999999997763 224466788889999998 666654433
Q ss_pred ch------hhcC--CCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc
Q 012694 212 PD------SIGL--LLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP 283 (458)
Q Consensus 212 ~~------~l~~--l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~ 283 (458)
+. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..+. .+++|+.|++++|.++.+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhh-cCCCCCEEECCCCCCCCCc-
Confidence 21 1111 1369999999999999987 9999999999999999999988655 8999999999999999998
Q ss_pred cccCCCCCcEEEcccCCCCCc--cccccCCCcccEEEccCCCCCCCccchh----hcCCCCCCEEec
Q 012694 284 SICEMRSLKYLDAHFNELHGL--PRAIGKLTRLEVLNLSSNFNDLTELPET----IGDLINLRELDL 344 (458)
Q Consensus 284 ~l~~l~~L~~L~l~~n~l~~l--~~~l~~l~~L~~L~L~~n~~~~~~l~~~----l~~l~~L~~L~L 344 (458)
.++.+++|++|++++|.++++ |..++.+++|+.|+|++| .+..+|+. +..+++|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N--~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN--SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS--GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC--cCCCCccHHHHHHHHCcccCccCC
Confidence 899999999999999999998 889999999999999998 55555543 345889999875
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=7.3e-18 Score=154.22 Aligned_cols=147 Identities=28% Similarity=0.415 Sum_probs=78.2
Q ss_pred eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCCC
Q 012694 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNK 230 (458)
Q Consensus 153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~ 230 (458)
+.++++++.++.+|..+. ++|+.|++++|.|+.++. .|..+++|++|++++|.|+.+ |..+.++++|++|++++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345666666666655433 456666666666665543 455566666666666666554 4455555555555555555
Q ss_pred CCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCC
Q 012694 231 LNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNEL 301 (458)
Q Consensus 231 l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l 301 (458)
++.+|.. +..+++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5555433 3445555555555555555544444444555555555555444432 234444444444444444
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1e-17 Score=153.18 Aligned_cols=150 Identities=25% Similarity=0.435 Sum_probs=112.8
Q ss_pred cEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCC
Q 012694 222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNE 300 (458)
Q Consensus 222 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~ 300 (458)
+.++++++.++.+|..+. ++|++|++++|.++.++...+..+++|+.|++++|.++.+ +..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 455556666666655443 4666677777777666665565677777777777777755 5667778888888888888
Q ss_pred CCCccc-cccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694 301 LHGLPR-AIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 301 l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
++.+|. .+..+++|++|+|++| .+..+ +..+..+++|+.|+|++|+|+.++ ..+..+++|++|++++|++.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNAN--KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCC--CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 888775 4677888888888887 45555 456888999999999999999886 4688899999999999999764
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=4.8e-18 Score=167.36 Aligned_cols=169 Identities=27% Similarity=0.329 Sum_probs=137.6
Q ss_pred eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh-hc-CCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeCC
Q 012694 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS-IA-GLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~-l~-~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n 229 (458)
+.++++++.++.+|..+. ..++.|++++|.|+.++.. +. ++++|++|++++|.|+.++ ..+.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578899999998887554 4688999999999887644 55 8899999999999998875 46888999999999999
Q ss_pred CCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccc----cCCCCCcEEEcccCCCCCc
Q 012694 230 KLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSI----CEMRSLKYLDAHFNELHGL 304 (458)
Q Consensus 230 ~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l----~~l~~L~~L~l~~n~l~~l 304 (458)
+++.++. .+..+++|++|++++|.++.++...+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.|+.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9887754 5788899999999999998887777778889999999999998887654 5688899999999998887
Q ss_pred c-ccccCCCc--ccEEEccCCC
Q 012694 305 P-RAIGKLTR--LEVLNLSSNF 323 (458)
Q Consensus 305 ~-~~l~~l~~--L~~L~L~~n~ 323 (458)
| ..+..++. ++.|+|++|.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSC
T ss_pred CHHHhhhccHhhcceEEecCCC
Confidence 7 45677776 4788888873
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=152.56 Aligned_cols=150 Identities=28% Similarity=0.356 Sum_probs=108.0
Q ss_pred cEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCC-chhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccC
Q 012694 222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFN 299 (458)
Q Consensus 222 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n 299 (458)
+.+++++|.++.+|..+. ..+++|++++|.++.++ ...+..+++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 355555555555554332 23456666666666552 3444566677777777777766554 5677778888888888
Q ss_pred CCCCccc-cccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCC
Q 012694 300 ELHGLPR-AIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 300 ~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
.+++++. .+..+++|++|+|++| .+..+ |..+..+++|+.|+|++|+|+.+ |..+..+++|++|++++|++.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN--RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS--CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCC--cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 8887654 5778888888888887 45555 56678889999999999999988 67889999999999999999864
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.5e-17 Score=153.12 Aligned_cols=144 Identities=28% Similarity=0.397 Sum_probs=72.5
Q ss_pred EEEcccCCCCccchhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCCCCCCCch-hhcCCCCCcEEEcCCCCC
Q 012694 177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNL 254 (458)
Q Consensus 177 ~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l 254 (458)
.++++++.++.+|..+. ++|++|++++|.++.+ |..+.++++|++|++++|+++.++. .+..+++|++|++++|.+
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 34444444444443222 4444555555544444 3344445555555555555544432 234455555555555555
Q ss_pred CcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCC
Q 012694 255 VCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSN 322 (458)
Q Consensus 255 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n 322 (458)
+.++...+..+++|+.|++++|.++.+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 5555444445555555555555555555555555555555555555555442 3455555555555555
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=152.57 Aligned_cols=147 Identities=21% Similarity=0.308 Sum_probs=77.1
Q ss_pred EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccc--hhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCC
Q 012694 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP--DSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNK 230 (458)
Q Consensus 154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~--~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~ 230 (458)
+++++++.++.+|..+. ..+++|++++|.|+.++ ..|.++++|++|++++|.|+.++. .+.++++|++|++++|+
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 56666666666655432 24456666666666552 225556666666666666555533 45555555555555555
Q ss_pred CCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCC
Q 012694 231 LNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELH 302 (458)
Q Consensus 231 l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~ 302 (458)
++.++. .+..+++|++|++++|.++.++...+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 554433 244555555555555555555444444445555555555555444 334444444455555444443
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.1e-18 Score=183.47 Aligned_cols=216 Identities=22% Similarity=0.217 Sum_probs=103.8
Q ss_pred CceeEEEecCCCCCccchhhCCCCCCcEEE-----cccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEE
Q 012694 150 VVVETVDLADRQLKLLPEAFGRLRGLVSLN-----LSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVL 224 (458)
Q Consensus 150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~-----l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L 224 (458)
+.++.|++.++.+...+..+.....|+.+. +..|.+...+..+..+.+|++|+|++|.+..+|..+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 457777777777776555433333333333 333444444566778888888888888888887777788888888
Q ss_pred EeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCC-
Q 012694 225 NVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG- 303 (458)
Q Consensus 225 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~- 303 (458)
+|++|.++.+|..++++++|++|+|++|.|+.+|..+. .+++|++|+|++|.++.+|..++.+++|++|+|++|.+++
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG-SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG-GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc-CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 88888888888888888888888888888888776654 7888888888888888888888888888888888888887
Q ss_pred ccccccCCC-cccEEEccCCCCCCCccchhhcCCCCCCEEeccCC--------CCCCC-chhhhCCCCCcEEECcCCCCC
Q 012694 304 LPRAIGKLT-RLEVLNLSSNFNDLTELPETIGDLINLRELDLSNN--------QIRAL-PDTFFRLENLTKLNLDQNPLV 373 (458)
Q Consensus 304 l~~~l~~l~-~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n--------~l~~l-~~~l~~l~~L~~L~L~~n~i~ 373 (458)
+|..+..+. .+..|+|++|.. ...+|. .|+.|++++| .+... +..+..+..+....+.+|.+.
T Consensus 332 ~p~~~~~~~~~~~~l~l~~N~l-~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 332 FLKILTEKSVTGLIFYLRDNRP-EIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC-CCCCCC------C-----------------------------------------CCC
T ss_pred ChHHHhhcchhhhHHhhccCcc-cCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 344443332 122366777622 233333 4556666666 22211 123344555666666777654
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=1.1e-16 Score=139.81 Aligned_cols=132 Identities=23% Similarity=0.168 Sum_probs=72.3
Q ss_pred CCCcEEEcccCCCC--ccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCC-CchhhcCCCCCcEEEc
Q 012694 173 RGLVSLNLSRNLLE--AMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT-LPESIARCSSLVELDA 249 (458)
Q Consensus 173 ~~L~~L~l~~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l 249 (458)
++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|+++. +|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45555666655555 5555555556666666666665555 445555666666666665554 4444444555555555
Q ss_pred CCCCCCcCCc-hhhccCCCCCEEeccCCcCccCCc----cccCCCCCcEEEcccCCCCCcc
Q 012694 250 SFNNLVCLPT-NIGYGLLNLERLSIKLNKLRTFPP----SICEMRSLKYLDAHFNELHGLP 305 (458)
Q Consensus 250 ~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~l~~n~l~~l~ 305 (458)
++|.++.++. ..+..+++|+.|++++|.++.++. .+..+++|++|++++|.+..+|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 5555555442 223345555555555555554443 4455555555555555555544
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=6.9e-17 Score=141.03 Aligned_cols=136 Identities=24% Similarity=0.208 Sum_probs=124.5
Q ss_pred CCCceeEEEecCCCCC--ccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCC-CchhhcCCCCccEE
Q 012694 148 SGVVVETVDLADRQLK--LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS-LPDSIGLLLNLKVL 224 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L 224 (458)
..++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+.++++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4578999999999998 8888889999999999999999988 779999999999999999998 77777889999999
Q ss_pred EeeCCCCCCCc--hhhcCCCCCcEEEcCCCCCCcCCc---hhhccCCCCCEEeccCCcCccCCcc
Q 012694 225 NVSGNKLNTLP--ESIARCSSLVELDASFNNLVCLPT---NIGYGLLNLERLSIKLNKLRTFPPS 284 (458)
Q Consensus 225 ~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~L~L~~n~l~~l~~~ 284 (458)
++++|.++.++ ..+..+++|++|++++|.++.++. ..+..+++|+.|++++|.+..+|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999999886 789999999999999999999887 5666899999999999999888764
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=1.2e-17 Score=175.24 Aligned_cols=230 Identities=17% Similarity=0.151 Sum_probs=130.5
Q ss_pred eeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCcc--chhhcCCcccceeeeecCCCC--CCchhhcCCCCccEEEee
Q 012694 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM--PDSIAGLQKLEELDVSSNLLQ--SLPDSIGLLLNLKVLNVS 227 (458)
Q Consensus 152 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l--~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~l~ 227 (458)
|+.|+++++....+|..+..+++|++|++++|.++.. ...+..+++|++|+++ +.+. .++.....+++|++|+++
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 3333333333334444555556666666666655421 2234556666666666 2222 122333456667777776
Q ss_pred C-----------CCCCC--CchhhcCCCCCcEEEcCCCCCCcCC-chhhccCCCCCEEecc----CCcCccCC------c
Q 012694 228 G-----------NKLNT--LPESIARCSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIK----LNKLRTFP------P 283 (458)
Q Consensus 228 ~-----------n~l~~--l~~~l~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~----~n~l~~l~------~ 283 (458)
+ +.++. ++.....+++|++|+++.|.++... ..+...+++|+.|+++ .|.++..| .
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 2 34442 2222344667777777666665322 2223246777777775 45555432 2
Q ss_pred cccCCCCCcEEEcccCC--CCC--ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCC--Cchhhh
Q 012694 284 SICEMRSLKYLDAHFNE--LHG--LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA--LPDTFF 357 (458)
Q Consensus 284 ~l~~l~~L~~L~l~~n~--l~~--l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~--l~~~l~ 357 (458)
.+..+++|++|++++|. +++ +......+++|++|++++|......++..+..+++|++|++++|.++. ++..+.
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 24557778888876543 444 222223477888888887733222345556778888888888888763 344556
Q ss_pred CCCCCcEEECcCCCCCCCcHHHHhh
Q 012694 358 RLENLTKLNLDQNPLVIPPMEIVNK 382 (458)
Q Consensus 358 ~l~~L~~L~L~~n~i~~~~~~~~~~ 382 (458)
.+++|++|++++|+++......+..
T Consensus 511 ~l~~L~~L~ls~n~it~~~~~~l~~ 535 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMTGQDLMQM 535 (592)
T ss_dssp HCSSCCEEEEESCBCCTTCTTGGGG
T ss_pred hcCccCeeECcCCcCCHHHHHHHHH
Confidence 7888888888888887665544433
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=7e-17 Score=172.99 Aligned_cols=189 Identities=22% Similarity=0.229 Sum_probs=116.6
Q ss_pred CCCcEEEcccCCCCccchhhcCCcccce-----eeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEE
Q 012694 173 RGLVSLNLSRNLLEAMPDSIAGLQKLEE-----LDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVEL 247 (458)
Q Consensus 173 ~~L~~L~l~~n~i~~l~~~l~~l~~L~~-----L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L 247 (458)
+.++.|++.+|.+..++..+.....|.. +++++|.+...+..+..+++|+.|+|++|.+..+|..+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 5688899988888877654433333333 33444555555677889999999999999999999888899999999
Q ss_pred EcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCC
Q 012694 248 DASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLT 327 (458)
Q Consensus 248 ~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~ 327 (458)
+|++|.++.+|..+. .+++|+.|+|++|.|+.+|..++.+++|++|+|++|.|+.+|..++.+++|++|+|++| .+.
T Consensus 253 ~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N--~l~ 329 (727)
T 4b8c_D 253 YLNGNSLTELPAEIK-NLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN--PLE 329 (727)
T ss_dssp BCTTSCCSCCCGGGG-GGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS--CCC
T ss_pred EeeCCcCcccChhhh-CCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC--ccC
Confidence 999999999987664 89999999999999999999999999999999999999999988999999999999998 444
Q ss_pred -ccchhhcCCC-CCCEEeccCCCCCC-CchhhhCCCCCcEEECcCC
Q 012694 328 -ELPETIGDLI-NLRELDLSNNQIRA-LPDTFFRLENLTKLNLDQN 370 (458)
Q Consensus 328 -~l~~~l~~l~-~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~L~~n 370 (458)
.+|..+..+. .+..++|++|.++. +| ..|..|++++|
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 4555554332 22357899998873 34 34556666665
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=6.2e-16 Score=132.11 Aligned_cols=125 Identities=25% Similarity=0.216 Sum_probs=97.2
Q ss_pred CCceeEEEecCCCCC--ccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCC-CchhhcCCCCccEEE
Q 012694 149 GVVVETVDLADRQLK--LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS-LPDSIGLLLNLKVLN 225 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~ 225 (458)
.++++.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 467888888888887 7777778888888888888888877 667888888888888888887 676667788888888
Q ss_pred eeCCCCCCCc--hhhcCCCCCcEEEcCCCCCCcCCc---hhhccCCCCCEEecc
Q 012694 226 VSGNKLNTLP--ESIARCSSLVELDASFNNLVCLPT---NIGYGLLNLERLSIK 274 (458)
Q Consensus 226 l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~L~L~ 274 (458)
+++|+++.++ ..+..+++|++|++++|.++.++. ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888764 667777888888888887777765 455567777777664
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=4.7e-16 Score=136.88 Aligned_cols=110 Identities=21% Similarity=0.246 Sum_probs=54.6
Q ss_pred CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhh-cCCCCccEEEe
Q 012694 148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNV 226 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l-~~l~~L~~L~l 226 (458)
...+|+.|++++|.++.++......++|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+ ..+++|++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 34455555555555555433222222555555555555554 34555555555555555555554322 44555555555
Q ss_pred eCCCCCCCch--hhcCCCCCcEEEcCCCCCCcCC
Q 012694 227 SGNKLNTLPE--SIARCSSLVELDASFNNLVCLP 258 (458)
Q Consensus 227 ~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~l~ 258 (458)
++|+++.+|. .+..+++|++|++++|.++.++
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 5555554443 4444445555555555444443
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=4.1e-16 Score=137.28 Aligned_cols=102 Identities=20% Similarity=0.279 Sum_probs=42.2
Q ss_pred CccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc--cccCCCCCcEEEcc
Q 012694 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP--SICEMRSLKYLDAH 297 (458)
Q Consensus 220 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~l~ 297 (458)
+|++|++++|.++.+ ..+..+++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 444444444444433 233334444444444444444433333334444444444444443333 33444444444444
Q ss_pred cCCCCCcccc----ccCCCcccEEEccCC
Q 012694 298 FNELHGLPRA----IGKLTRLEVLNLSSN 322 (458)
Q Consensus 298 ~n~l~~l~~~----l~~l~~L~~L~L~~n 322 (458)
+|.++.+|.. +..+++|+.|++++|
T Consensus 122 ~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp SSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 4444443332 344444444444443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=8.1e-16 Score=131.37 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=36.1
Q ss_pred CCCcEEEcccCCCC--ccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCC-CchhhcCCCCCcEEEc
Q 012694 173 RGLVSLNLSRNLLE--AMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT-LPESIARCSSLVELDA 249 (458)
Q Consensus 173 ~~L~~L~l~~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l 249 (458)
++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34444455444444 4444444444444444444444444 334444444444444444443 3333333444444444
Q ss_pred CCCCCC
Q 012694 250 SFNNLV 255 (458)
Q Consensus 250 ~~n~l~ 255 (458)
++|.++
T Consensus 96 s~N~i~ 101 (149)
T 2je0_A 96 SGNKIK 101 (149)
T ss_dssp TTSCCC
T ss_pred CCCcCC
Confidence 444433
No 124
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=1.3e-16 Score=167.16 Aligned_cols=227 Identities=14% Similarity=0.090 Sum_probs=150.3
Q ss_pred CCCceeEEEecCCCCCc-----cchhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCCCCchhhcC
Q 012694 148 SGVVVETVDLADRQLKL-----LPEAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQSLPDSIGL 217 (458)
Q Consensus 148 ~~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~ 217 (458)
.+++|++|++++|.++. ++..+..+++|++|++++|.++ .++..+.++++|++|++++|.+..++..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 35677777777776542 3334456677777777777775 2334456677777777777777777777777
Q ss_pred CCCccEEEeeCCCCC----CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc--cCCccccCCCCC
Q 012694 218 LLNLKVLNVSGNKLN----TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR--TFPPSICEMRSL 291 (458)
Q Consensus 218 l~~L~~L~l~~n~l~----~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L 291 (458)
+++|+.|+++++... .....+..+++|+.|+++++....++... ..+++|++|++++|.++ .+...+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 777777777643211 23345666777777877776555555433 36788888888888765 222345778888
Q ss_pred cEEEcccCCCCC--ccccccCCCcccEEEccC----------CCCCCC--ccchhhcCCCCCCEEeccCCCCCCC-chhh
Q 012694 292 KYLDAHFNELHG--LPRAIGKLTRLEVLNLSS----------NFNDLT--ELPETIGDLINLRELDLSNNQIRAL-PDTF 356 (458)
Q Consensus 292 ~~L~l~~n~l~~--l~~~l~~l~~L~~L~L~~----------n~~~~~--~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l 356 (458)
++|+++ +.+.+ ++.....+++|++|++++ + ..++ .++.....+++|++|+++.|+++.. +..+
T Consensus 321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE-GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT-CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccccc-CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 888888 44433 444456788899999983 2 1222 2333345688999999988888833 3455
Q ss_pred hC-CCCCcEEECc----CCCCCCCcH
Q 012694 357 FR-LENLTKLNLD----QNPLVIPPM 377 (458)
Q Consensus 357 ~~-l~~L~~L~L~----~n~i~~~~~ 377 (458)
.. +++|++|+++ .|.+++.|.
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred HhhCCCCcEEEEeecCCCccccCchH
Confidence 54 8899999996 667777653
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=133.75 Aligned_cols=124 Identities=27% Similarity=0.380 Sum_probs=69.2
Q ss_pred eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeCCCC
Q 012694 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNKL 231 (458)
Q Consensus 153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~l 231 (458)
+.++++++.++.+|..+. ++|++|++++|.|+.+|..+.++++|++|++++|.|+.++ ..|.++++|++|++++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 355666666666655432 4566666666666666655666666666666666666553 3455556666666666655
Q ss_pred CCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcC
Q 012694 232 NTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278 (458)
Q Consensus 232 ~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 278 (458)
+.++. .+..+++|++|++++|.++.++...+..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55432 355555555555555555555554444444555555544443
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=4.2e-15 Score=132.78 Aligned_cols=126 Identities=23% Similarity=0.315 Sum_probs=58.1
Q ss_pred cEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch--hhcCCCCccEEEeeCCCCCCC-chhhcCCCCCcEEEcCCC
Q 012694 176 VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD--SIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFN 252 (458)
Q Consensus 176 ~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n 252 (458)
++++++++.++.+|..+.. +|++|++++|.++.++. .+..+++|++|++++|+++.+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3444444444444432221 44444444444444432 144444444444444444433 334444445555555555
Q ss_pred CCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCC
Q 012694 253 NLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHG 303 (458)
Q Consensus 253 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~ 303 (458)
.++.++...+.++++|++|++++|.++.+ |..+..+++|++|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 54444444333444455555555544433 3344455555555555555543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=6.8e-15 Score=131.52 Aligned_cols=125 Identities=26% Similarity=0.420 Sum_probs=75.1
Q ss_pred cEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCC
Q 012694 176 VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNL 254 (458)
Q Consensus 176 ~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l 254 (458)
++++++++.++.+|..+. ++|++|++++|.|+.+|..+.++++|++|++++|.++.++ ..+.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456666666666665432 4666666666666666666666666666666666666554 3456666666666666666
Q ss_pred CcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCC
Q 012694 255 VCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELH 302 (458)
Q Consensus 255 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~ 302 (458)
+.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66665555555666666666665555544 2445555555555555543
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=2.1e-15 Score=146.46 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=59.6
Q ss_pred CCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCcc-ccccCCCccc-EEEccCCCCCCCccc-hhhcCCCCCC
Q 012694 265 LLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLP-RAIGKLTRLE-VLNLSSNFNDLTELP-ETIGDLINLR 340 (458)
Q Consensus 265 l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~-~L~L~~n~~~~~~l~-~~l~~l~~L~ 340 (458)
+++|+.+++++|.++.++. ++.++++|+.|++.+| ++.++ .+|.++++|+ .+++.++ +..++ ..|.++++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~---l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS---VTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT---CCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc---ceEEchhhhhCCccCC
Confidence 5666666666666666654 3556666666666665 55554 3566666666 6666652 34443 3456666666
Q ss_pred EEeccCCCCCCCc-hhhhCCCCCcEEE
Q 012694 341 ELDLSNNQIRALP-DTFFRLENLTKLN 366 (458)
Q Consensus 341 ~L~L~~n~l~~l~-~~l~~l~~L~~L~ 366 (458)
.+++++|+++.++ .+|.+|++|+.|+
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666666666664 3566666666665
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=4.3e-15 Score=132.74 Aligned_cols=125 Identities=22% Similarity=0.293 Sum_probs=113.3
Q ss_pred eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh--hcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCC
Q 012694 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS--IAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~--l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n 229 (458)
++++++++.++.+|..+.. +|++|++++|.|+.++.. ++.+++|++|++++|.|+.+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6899999999999986654 999999999999988753 89999999999999999988 678999999999999999
Q ss_pred CCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc
Q 012694 230 KLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279 (458)
Q Consensus 230 ~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 279 (458)
+++.++. .+.++++|++|++++|.++.+....+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9997764 4888999999999999999887777778999999999999887
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=1.6e-16 Score=166.64 Aligned_cols=226 Identities=17% Similarity=0.134 Sum_probs=118.0
Q ss_pred CCceeEEEecCCCCCc-cchhhC-CCCCCcEEEcccC-CCCc--cchhhcCCcccceeeeecCCCCCC-----chhhcCC
Q 012694 149 GVVVETVDLADRQLKL-LPEAFG-RLRGLVSLNLSRN-LLEA--MPDSIAGLQKLEELDVSSNLLQSL-----PDSIGLL 218 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~-l~~~~~-~l~~L~~L~l~~n-~i~~--l~~~l~~l~~L~~L~L~~n~l~~l-----~~~l~~l 218 (458)
+++|++|+++++.++. .+..+. .+++|++|++++| .++. ++..+.++++|++|++++|.++.. +.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 3456666666665542 122232 3556666666665 4442 333344566666666666654431 1222345
Q ss_pred CCccEEEeeCCC--CC--CCchhhcCCCCCcEEEcCCC-CCCcCCchhhccCCCCCEEeccCC-----------------
Q 012694 219 LNLKVLNVSGNK--LN--TLPESIARCSSLVELDASFN-NLVCLPTNIGYGLLNLERLSIKLN----------------- 276 (458)
Q Consensus 219 ~~L~~L~l~~n~--l~--~l~~~l~~l~~L~~L~l~~n-~l~~l~~~~~~~l~~L~~L~L~~n----------------- 276 (458)
++|++|++++|. ++ .++..+..+++|++|++++| .++.++. ....+++|+.|+++.+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 566666666554 21 11122233566666666655 2223222 2224455555543322
Q ss_pred --------------cCccCCccccCCCCCcEEEcccCCCCC--ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCC
Q 012694 277 --------------KLRTFPPSICEMRSLKYLDAHFNELHG--LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLR 340 (458)
Q Consensus 277 --------------~l~~l~~~l~~l~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~ 340 (458)
....++..+..+++|++|++++|.+++ +...+..+++|++|++++| .....++.....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 222333334456778888888887665 3344567788888888876 22223333334577888
Q ss_pred EEeccC---------CCCCCC--chhhhCCCCCcEEECcCCCCCCCc
Q 012694 341 ELDLSN---------NQIRAL--PDTFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 341 ~L~L~~---------n~l~~l--~~~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
+|++++ +.++.. ......+++|++|.+..|.++...
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~ 388 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence 888733 345422 122234788888887777776433
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=1.1e-16 Score=143.76 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=81.8
Q ss_pred eeEEEecCC--CCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694 152 VETVDLADR--QLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 152 L~~L~l~~~--~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n 229 (458)
++...+.+. .++.+|..+..+++|++|++++|.++.+| .+.++++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 445555544 45556666777777777777777777776 677777777777777777777666666677777777777
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLR 279 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~ 279 (458)
+++.+| .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.+.
T Consensus 104 ~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 104 QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 777665 46666666666666666665543 23335555555555555554
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.4e-14 Score=140.57 Aligned_cols=191 Identities=16% Similarity=0.216 Sum_probs=149.7
Q ss_pred CCceeEEEecCCCCC--------------------ccch-hhCC--------CCCCcEEEcccCCCCccc-hhhcCCccc
Q 012694 149 GVVVETVDLADRQLK--------------------LLPE-AFGR--------LRGLVSLNLSRNLLEAMP-DSIAGLQKL 198 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~--------------------~l~~-~~~~--------l~~L~~L~l~~n~i~~l~-~~l~~l~~L 198 (458)
.++|+.|+|++|.+. .+|+ +|.. |++|+.|++.+ .++.|+ .+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 578999999999888 3443 6777 89999999988 888886 458999999
Q ss_pred ceeeeecCCCCCCc-hhhcCCCCccEEEeeCCC-------CC--------------------CCch--------------
Q 012694 199 EELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNK-------LN--------------------TLPE-------------- 236 (458)
Q Consensus 199 ~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~-------l~--------------------~l~~-------------- 236 (458)
+.|++++|.+..++ .+|..+.++..+....+. +. .++.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 99999999887764 456666666665544310 00 0000
Q ss_pred -------------hh-cCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCc-EEEcccCC
Q 012694 237 -------------SI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLK-YLDAHFNE 300 (458)
Q Consensus 237 -------------~l-~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~-~L~l~~n~ 300 (458)
.+ ..+++|+.+++++|+++.++...|.++.+|+.+++.+| ++.++. ++.++++|+ .+++.. .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 00 13789999999999999999999999999999999998 777764 688999999 999988 7
Q ss_pred CCCcc-ccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEec
Q 012694 301 LHGLP-RAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDL 344 (458)
Q Consensus 301 l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L 344 (458)
++.++ .+|.+|++|+.+++++| .+..++. .|.++++|+.++.
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n--~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGD--KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSS--CCCEECTTTTCTTCCCCEEEC
T ss_pred ceEEchhhhhCCccCCEEEeCCC--ccCccchhhhcCCcchhhhcc
Confidence 88876 68999999999999876 6777765 6889999998864
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=8.6e-16 Score=160.96 Aligned_cols=226 Identities=17% Similarity=0.168 Sum_probs=139.4
Q ss_pred ccCCCceeEE-EecCCCCCccchhhCCCCCCcEEEcccCCCCc--cchhhcCCcccceeeeecCCCCC--CchhhcCCCC
Q 012694 146 AESGVVVETV-DLADRQLKLLPEAFGRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQS--LPDSIGLLLN 220 (458)
Q Consensus 146 ~~~~~~L~~L-~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~--l~~~l~~l~~L~~L~L~~n~l~~--l~~~l~~l~~ 220 (458)
+..+++|+.| .+.+.....++..+..+++|++|++++|.++. +...+..+++|++|++++| ++. ++.....+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 3445555555 34333333455444567788888888887663 2333567888888888877 431 2222345788
Q ss_pred ccEEEeeC---------CCCCC--CchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEecc--C----CcCccCC
Q 012694 221 LKVLNVSG---------NKLNT--LPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIK--L----NKLRTFP 282 (458)
Q Consensus 221 L~~L~l~~---------n~l~~--l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~--~----n~l~~l~ 282 (458)
|++|++.+ +.++. +......+++|++|.++.|.++.... .+...+++|+.|+++ + +.++..|
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 88888843 34442 11112347888888887777764332 233357888888888 3 4555332
Q ss_pred ------ccccCCCCCcEEEcccCCCCC-ccccccC-CCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCC--
Q 012694 283 ------PSICEMRSLKYLDAHFNELHG-LPRAIGK-LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL-- 352 (458)
Q Consensus 283 ------~~l~~l~~L~~L~l~~n~l~~-l~~~l~~-l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l-- 352 (458)
..+..+++|++|++++ .+++ ....+.. +++|+.|++++|......+......+++|+.|++++|.++..
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 2255678888888876 5555 2233433 788888988887322122222225688899999998888632
Q ss_pred chhhhCCCCCcEEECcCCCCC
Q 012694 353 PDTFFRLENLTKLNLDQNPLV 373 (458)
Q Consensus 353 ~~~l~~l~~L~~L~L~~n~i~ 373 (458)
...+..+++|++|++++|+++
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhCCCCCEEeeeCCCCC
Confidence 224455788899999888873
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=7.2e-14 Score=122.88 Aligned_cols=124 Identities=28% Similarity=0.435 Sum_probs=58.8
Q ss_pred eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCC
Q 012694 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNK 230 (458)
Q Consensus 153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~ 230 (458)
+.++++++.++.+|..+. ++|++|++++|.++.++. .++.+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 345555555555553322 455555555555555443 24555555555555555554433 23445555555555555
Q ss_pred CCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcC
Q 012694 231 LNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278 (458)
Q Consensus 231 l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 278 (458)
++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 5444332 34444444444444444444443333344444444444433
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=8.8e-14 Score=122.31 Aligned_cols=127 Identities=27% Similarity=0.374 Sum_probs=72.3
Q ss_pred CcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCCCCCchh-hcCCCCCcEEEcCCC
Q 012694 175 LVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASFN 252 (458)
Q Consensus 175 L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n 252 (458)
.+.++++++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|+++.++.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4566666666666654332 466666666666666543 345566666666666666655433 455666666666666
Q ss_pred CCCcCCchhhccCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEcccCCCCC
Q 012694 253 NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-ICEMRSLKYLDAHFNELHG 303 (458)
Q Consensus 253 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~ 303 (458)
.++.++...+..+++|+.|++++|.++.++.. +..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66655555444555555555555555555443 2445555555555555544
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=3.7e-16 Score=140.37 Aligned_cols=139 Identities=26% Similarity=0.314 Sum_probs=97.6
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG 309 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~ 309 (458)
.++.+|..+..+++|++|++++|.++.++ .+..+++|+.|++++|.++.+|..+..+++|++|++++|.++++| .+.
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 34455556666667777777777666665 333667777777777777777766666777888888888887776 477
Q ss_pred CCCcccEEEccCCCCCCCccch--hhcCCCCCCEEeccCCCCCCCc-----------hhhhCCCCCcEEECcCCCCCCC
Q 012694 310 KLTRLEVLNLSSNFNDLTELPE--TIGDLINLRELDLSNNQIRALP-----------DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 310 ~l~~L~~L~L~~n~~~~~~l~~--~l~~l~~L~~L~L~~n~l~~l~-----------~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
.+++|++|++++| .+..++. .+..+++|+.|++++|.++..+ ..+..+++|+.|+ +|+++..
T Consensus 113 ~l~~L~~L~l~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 113 KLVNLRVLYMSNN--KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HHHHSSEEEESEE--ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred cCCCCCEEECCCC--cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 7778888888877 4555543 5777888888888888776442 1377889999886 6766643
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=4.5e-13 Score=133.36 Aligned_cols=217 Identities=12% Similarity=0.161 Sum_probs=166.2
Q ss_pred CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694 149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV 226 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l 226 (458)
..+|+.+.+..+ ++.++. +|..+ +|+.+.+.+ .++.++ .+|.+|.+|+.+++.+|.++.++.....+.+|+.+.+
T Consensus 134 ~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 134 NSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred cCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 346888888766 666655 56664 688888876 677775 4688899999999998888888765444688999988
Q ss_pred eCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccccCCCCCcEEEcccCCCC--
Q 012694 227 SGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELH-- 302 (458)
Q Consensus 227 ~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~-- 302 (458)
..+ ++.++ .+|.++++|+.+++..+ ++.++...|.+ .+|+.+.+. +.++.++ .++.++++|+.+++.+|.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 754 66664 46778889999999864 78888888866 789999884 4566664 56788999999999888776
Q ss_pred ---Ccc-ccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCc
Q 012694 303 ---GLP-RAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPP 376 (458)
Q Consensus 303 ---~l~-~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~ 376 (458)
.++ ..|..|++|+.+.+.++ +..++ ..|.++.+|+.+.|..+ ++.+. .+|.+| +|+.+++.+|.+...+
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred cccEECHHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 344 57889999999999864 55564 35788899999999655 77774 578888 9999999998776554
Q ss_pred H
Q 012694 377 M 377 (458)
Q Consensus 377 ~ 377 (458)
.
T Consensus 362 ~ 362 (401)
T 4fdw_A 362 E 362 (401)
T ss_dssp C
T ss_pred c
Confidence 3
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=1.2e-12 Score=130.21 Aligned_cols=212 Identities=14% Similarity=0.223 Sum_probs=171.5
Q ss_pred CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEe
Q 012694 149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNV 226 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l 226 (458)
..+|+.+.+.+ .++.++. +|..|.+|+.+++.+|.++.++...-.+.+|+.+.+..+ ++.++ .+|.++++|+.+++
T Consensus 156 ~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 156 NSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 35699999986 6777764 899999999999999999999865333689999999854 77774 57889999999999
Q ss_pred eCCCCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-----cCC-ccccCCCCCcEEEcccC
Q 012694 227 SGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-----TFP-PSICEMRSLKYLDAHFN 299 (458)
Q Consensus 227 ~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-----~l~-~~l~~l~~L~~L~l~~n 299 (458)
..+ ++.++. +|.+ .+|+.+.+ .+.++.++...|.++++|+.+.+.++.+. .++ .++.++++|+.+.+. +
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred CCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 875 666654 4555 79999999 56689999999999999999999988765 343 568899999999998 5
Q ss_pred CCCCcc-ccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCCC-CCcEEECcCC
Q 012694 300 ELHGLP-RAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRLE-NLTKLNLDQN 370 (458)
Q Consensus 300 ~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~-~L~~L~L~~n 370 (458)
.++.++ .+|.+|++|+.+.|..| +..+. ..|.++ +|+.+++.+|.+..++ ..+.+++ +++.|++..+
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~---l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN---VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT---CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred ceEEEhhhhhcCCCCccEEEECcc---ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 588876 48899999999999875 45554 457788 9999999999988774 4666674 7888888654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2e-12 Score=113.43 Aligned_cols=101 Identities=25% Similarity=0.350 Sum_probs=45.6
Q ss_pred cEEEcccCCCCccchhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCCCCCCCchh-hcCCCCCcEEEcCCCC
Q 012694 176 VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASFNN 253 (458)
Q Consensus 176 ~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~ 253 (458)
+.+++++|.++.+|..+. ++|++|++++|.|+.+ |..+.++++|++|++++|+++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555544332 4455555555555544 33444444444444444444444432 2344444444444444
Q ss_pred CCcCCchhhccCCCCCEEeccCCcC
Q 012694 254 LVCLPTNIGYGLLNLERLSIKLNKL 278 (458)
Q Consensus 254 l~~l~~~~~~~l~~L~~L~L~~n~l 278 (458)
++.++...+..+++|+.|++++|.+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 4444433333344444444444433
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=2.3e-12 Score=112.47 Aligned_cols=102 Identities=28% Similarity=0.385 Sum_probs=45.2
Q ss_pred eeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcC
Q 012694 200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278 (458)
Q Consensus 200 ~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 278 (458)
++++++|.++.+|..+. ++|++|++++|+++.+ |..+.++++|++|++++|.++.++...+..+++|+.|++++|.+
T Consensus 13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 34444444444433321 3444444444444433 22344444444444444444444444444444444444444444
Q ss_pred ccCCc-cccCCCCCcEEEcccCCCCC
Q 012694 279 RTFPP-SICEMRSLKYLDAHFNELHG 303 (458)
Q Consensus 279 ~~l~~-~l~~l~~L~~L~l~~n~l~~ 303 (458)
+.++. .+..+++|++|++++|.++.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 44433 24444555555555554443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=2.8e-12 Score=112.40 Aligned_cols=102 Identities=24% Similarity=0.358 Sum_probs=51.5
Q ss_pred eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCchh-hcCCCCccEEEeeCCC
Q 012694 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLNVSGNK 230 (458)
Q Consensus 153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~ 230 (458)
+.++++++.++.+|..+. ++|++|++++|.|+.+ |..|.++++|++|+|++|+|+.+|.. +.++++|++|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 345555555555554332 4555555555555544 23455555555555555555555432 3455555555555555
Q ss_pred CCCCchh-hcCCCCCcEEEcCCCCCCc
Q 012694 231 LNTLPES-IARCSSLVELDASFNNLVC 256 (458)
Q Consensus 231 l~~l~~~-l~~l~~L~~L~l~~n~l~~ 256 (458)
++.+|.. +..+++|++|++++|.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 5555433 4445555555555555443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=3.2e-12 Score=111.65 Aligned_cols=101 Identities=26% Similarity=0.354 Sum_probs=46.9
Q ss_pred eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCC
Q 012694 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNK 230 (458)
Q Consensus 153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~ 230 (458)
+.++++++.++.+|..+. ++|++|++++|.|+.+ +..|.++++|++|++++|+|+.++. .+..+++|++|++++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 345555555555544332 4455555555555544 2334445555555555555544433 23444444444444444
Q ss_pred CCCCch-hhcCCCCCcEEEcCCCCCC
Q 012694 231 LNTLPE-SIARCSSLVELDASFNNLV 255 (458)
Q Consensus 231 l~~l~~-~l~~l~~L~~L~l~~n~l~ 255 (458)
++.++. .+..+++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 444433 2444444444444444443
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=3.5e-13 Score=132.86 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=125.4
Q ss_pred CcccceeeeecCCCCCC-----chhhc-CCCCccEEEeeCCCCCCC--chhhcCCCCCcEEEcCCCCCCcCCchhh----
Q 012694 195 LQKLEELDVSSNLLQSL-----PDSIG-LLLNLKVLNVSGNKLNTL--PESIARCSSLVELDASFNNLVCLPTNIG---- 262 (458)
Q Consensus 195 l~~L~~L~L~~n~l~~l-----~~~l~-~l~~L~~L~l~~n~l~~l--~~~l~~l~~L~~L~l~~n~l~~l~~~~~---- 262 (458)
+++|++|++++|.++.. ...+. ..++|+.|++++|.++.. ..-...+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999999853 23333 337999999999998732 1222335689999999999975433222
Q ss_pred -ccCCCCCEEeccCCcCcc-----CCccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCCc---
Q 012694 263 -YGLLNLERLSIKLNKLRT-----FPPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLTE--- 328 (458)
Q Consensus 263 -~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~--- 328 (458)
...++|++|++++|.++. ++..+..+++|++|++++|.+++ +...+..+++|++|+|++| .++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N--~i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN--GAGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS--CCCHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC--CCCHHHH
Confidence 346889999999999873 55566788999999999999986 3566788889999999998 4443
Q ss_pred --cchhhcCCCCCCEEeccCCCCCCCc-hhhhCC---C--CCcEEE--CcCCCCC
Q 012694 329 --LPETIGDLINLRELDLSNNQIRALP-DTFFRL---E--NLTKLN--LDQNPLV 373 (458)
Q Consensus 329 --l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l---~--~L~~L~--L~~n~i~ 373 (458)
+...+...++|++|+|++|.|+... ..+..+ . .|+.+. +.+|.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3445667789999999999998442 233332 2 166666 5555553
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=7.6e-13 Score=130.44 Aligned_cols=152 Identities=22% Similarity=0.246 Sum_probs=115.0
Q ss_pred CCCCcEEEcccCCCCcc-----chhhc-CCcccceeeeecCCCCCC--chhhcCCCCccEEEeeCCCCCCC-----chhh
Q 012694 172 LRGLVSLNLSRNLLEAM-----PDSIA-GLQKLEELDVSSNLLQSL--PDSIGLLLNLKVLNVSGNKLNTL-----PESI 238 (458)
Q Consensus 172 l~~L~~L~l~~n~i~~l-----~~~l~-~l~~L~~L~L~~n~l~~l--~~~l~~l~~L~~L~l~~n~l~~l-----~~~l 238 (458)
+++|++|++++|.++.. ...+. ...+|++|+|++|.++.. ......+++|++|++++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35799999999999843 23333 237999999999998742 22223456899999999999743 2333
Q ss_pred -cCCCCCcEEEcCCCCCCcCCch----hhccCCCCCEEeccCCcCcc-----CCccccCCCCCcEEEcccCCCCC-----
Q 012694 239 -ARCSSLVELDASFNNLVCLPTN----IGYGLLNLERLSIKLNKLRT-----FPPSICEMRSLKYLDAHFNELHG----- 303 (458)
Q Consensus 239 -~~l~~L~~L~l~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~----- 303 (458)
...++|++|++++|.++..... ....+++|++|++++|.++. ++..+...++|++|++++|.|++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468999999999998753321 12368899999999999873 45667788899999999999986
Q ss_pred ccccccCCCcccEEEccCCC
Q 012694 304 LPRAIGKLTRLEVLNLSSNF 323 (458)
Q Consensus 304 l~~~l~~l~~L~~L~L~~n~ 323 (458)
+...+..+++|++|+|++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 44566778999999999984
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.2e-10 Score=113.43 Aligned_cols=102 Identities=25% Similarity=0.285 Sum_probs=83.1
Q ss_pred EEEecCC-CCCccchhhCCCCCCcEEEccc-CCCCccc-hhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeCC
Q 012694 154 TVDLADR-QLKLLPEAFGRLRGLVSLNLSR-NLLEAMP-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGN 229 (458)
Q Consensus 154 ~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~-n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n 229 (458)
.++++++ .++.+|. +..+.+|++|+|++ |.|+.++ ..|+++++|++|+|++|+|+.++ ..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688887 8888888 88888899999986 8888886 46888999999999999988774 46788899999999999
Q ss_pred CCCCCchhhcCCCCCcEEEcCCCCCCc
Q 012694 230 KLNTLPESIARCSSLVELDASFNNLVC 256 (458)
Q Consensus 230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~ 256 (458)
+|+.+|..+.....|+.|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 988887655444448888888888774
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.8e-10 Score=112.18 Aligned_cols=104 Identities=26% Similarity=0.337 Sum_probs=89.1
Q ss_pred cEEEcccC-CCCccchhhcCCcccceeeeec-CCCCCCc-hhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCC
Q 012694 176 VSLNLSRN-LLEAMPDSIAGLQKLEELDVSS-NLLQSLP-DSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASF 251 (458)
Q Consensus 176 ~~L~l~~n-~i~~l~~~l~~l~~L~~L~L~~-n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~ 251 (458)
..++++++ .++.+|. +..+.+|++|+|++ |.|+.++ ..|.++++|++|+|++|+|+.++ ..|.++++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688888 8999998 99999999999996 9999886 57889999999999999999775 4678899999999999
Q ss_pred CCCCcCCchhhccCCCCCEEeccCCcCccC
Q 012694 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTF 281 (458)
Q Consensus 252 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l 281 (458)
|.|+.++...+..+. |+.|++.+|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999999988875555 99999999988743
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=1.7e-09 Score=105.74 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=92.5
Q ss_pred CCceeEEEecCCCCC---------ccchhhCCCCCCcEEEcccCCCC----------ccchhhcCCcccceeeeecCCCC
Q 012694 149 GVVVETVDLADRQLK---------LLPEAFGRLRGLVSLNLSRNLLE----------AMPDSIAGLQKLEELDVSSNLLQ 209 (458)
Q Consensus 149 ~~~L~~L~l~~~~l~---------~l~~~~~~l~~L~~L~l~~n~i~----------~l~~~l~~l~~L~~L~L~~n~l~ 209 (458)
...++.|.+...... .+..++.++++|+.|.+.+.... .+...+..+++|+.|++++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 345667776654432 11223445677777777554221 23334455566666666555211
Q ss_pred CCchhhcCCCCccEEEeeCCCCCCC-chhhc--CCCCCcEEEcCCC--CCCcCCchhhccCCCCCEEeccCCcCccCCcc
Q 012694 210 SLPDSIGLLLNLKVLNVSGNKLNTL-PESIA--RCSSLVELDASFN--NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS 284 (458)
Q Consensus 210 ~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~--~l~~L~~L~l~~n--~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~ 284 (458)
.++. +. +++|++|++..|.++.- ...+. .+++|++|+++.+ .... ...+..+...
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~------------------~~~~~~l~~~ 245 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF------------------DGDMNVFRPL 245 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC------------------CSCGGGTGGG
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc------------------chhHHHHHHH
Confidence 2222 22 45566666655554411 11121 3455555554321 1000 0001111111
Q ss_pred c--cCCCCCcEEEcccCCCCC-ccccc---cCCCcccEEEccCCCCCCCc-----cchhhcCCCCCCEEeccCCCCCCC-
Q 012694 285 I--CEMRSLKYLDAHFNELHG-LPRAI---GKLTRLEVLNLSSNFNDLTE-----LPETIGDLINLRELDLSNNQIRAL- 352 (458)
Q Consensus 285 l--~~l~~L~~L~l~~n~l~~-l~~~l---~~l~~L~~L~L~~n~~~~~~-----l~~~l~~l~~L~~L~L~~n~l~~l- 352 (458)
+ ..+++|++|++++|.+.+ .+..+ ..+++|++|+|+.| .++. ++..+..+++|+.|++++|.|+.-
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n--~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG--VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS--CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC--CCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 1 235666666666666654 11111 24566777777665 2322 223334456777777777776622
Q ss_pred chhhhC-CCCCcEEECcCCC
Q 012694 353 PDTFFR-LENLTKLNLDQNP 371 (458)
Q Consensus 353 ~~~l~~-l~~L~~L~L~~n~ 371 (458)
-..+.. + ...++++++.
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 122322 2 3456776665
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=1.2e-09 Score=106.76 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=47.7
Q ss_pred CCCcccEEEccCCCCCCCccchhh---cCCCCCCEEeccCCCCCC-----CchhhhCCCCCcEEECcCCCCCC
Q 012694 310 KLTRLEVLNLSSNFNDLTELPETI---GDLINLRELDLSNNQIRA-----LPDTFFRLENLTKLNLDQNPLVI 374 (458)
Q Consensus 310 ~l~~L~~L~L~~n~~~~~~l~~~l---~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~L~~n~i~~ 374 (458)
.+++|++|+|.+|... ...+..+ ..+++|++|+|+.|.|+. ++..+..+++|+.|+|++|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~-~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQ-NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTH-HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCc-hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 5799999999987322 1112222 357899999999999985 34455678999999999998874
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.90 E-value=3e-08 Score=98.29 Aligned_cols=105 Identities=10% Similarity=0.207 Sum_probs=64.2
Q ss_pred hhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCccc-hhhcCCCC
Q 012694 261 IGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLIN 338 (458)
Q Consensus 261 ~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~ 338 (458)
.|.++.+|+.+.+..+...--..++.++++|+.+.+. +.++.++ .+|.++.+|+.+.|..+ +..+. ..|.++.+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~---v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG---ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTT
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc---ccEehHhHhhCCCC
Confidence 3444455555555433222122344556666666664 3455554 36777788888888764 44443 35677888
Q ss_pred CCEEeccCCCCCCCc-hhhhCCCCCcEEECcCC
Q 012694 339 LRELDLSNNQIRALP-DTFFRLENLTKLNLDQN 370 (458)
Q Consensus 339 L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n 370 (458)
|+.+.+..+ ++.+. .+|.+|.+|+.+++.++
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 888888644 66664 57788888888888765
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.81 E-value=4.8e-08 Score=96.82 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=74.6
Q ss_pred cCCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCC------------C----
Q 012694 147 ESGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNL------------L---- 208 (458)
Q Consensus 147 ~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~------------l---- 208 (458)
..+.+|+.+.+..+ ++.+.+ +|..|.+|+.+++..+ ++.++ .+|.++.+|+.+.+..+- +
T Consensus 68 ~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred hCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 35688999999754 777755 7888999999999754 66564 357777777766654321 0
Q ss_pred -----CCC-chhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEec
Q 012694 209 -----QSL-PDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI 273 (458)
Q Consensus 209 -----~~l-~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L 273 (458)
..+ ..+|.++.+|+.+.+.++. ..++ ..+.++.+|+.+.+..+ ++.+....+.++..|+.+.+
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 111 1346667778888776542 3332 34556666776666544 44444444444444444433
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=4e-09 Score=93.10 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=75.0
Q ss_pred ccCCCceeEEEecCC-CCC-----ccchhhCCCCCCcEEEcccCCCCc-----cchhhcCCcccceeeeecCCCCC----
Q 012694 146 AESGVVVETVDLADR-QLK-----LLPEAFGRLRGLVSLNLSRNLLEA-----MPDSIAGLQKLEELDVSSNLLQS---- 210 (458)
Q Consensus 146 ~~~~~~L~~L~l~~~-~l~-----~l~~~~~~l~~L~~L~l~~n~i~~-----l~~~l~~l~~L~~L~L~~n~l~~---- 210 (458)
+...+.|++|++++| .+. .+...+...++|++|+|++|.|+. +...+...++|++|+|++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344677888888888 776 344566777788888888888773 34556666778888888887774
Q ss_pred -CchhhcCCCCccEEEe--eCCCCCC-----CchhhcCCCCCcEEEcCCCCCC
Q 012694 211 -LPDSIGLLLNLKVLNV--SGNKLNT-----LPESIARCSSLVELDASFNNLV 255 (458)
Q Consensus 211 -l~~~l~~l~~L~~L~l--~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~ 255 (458)
+...+...++|++|++ ++|.++. +...+...++|++|++++|.++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666677777777 6677762 3445555667777777776654
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.80 E-value=4.9e-08 Score=96.71 Aligned_cols=126 Identities=15% Similarity=0.189 Sum_probs=82.2
Q ss_pred hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc-ccccCCCccc
Q 012694 237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLE 315 (458)
Q Consensus 237 ~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~ 315 (458)
.+..+..|+.+.+..+ ...+....+..+..++.+....+.+.. ..+..+.+|+.+.+..+ ++.++ .+|.++.+|+
T Consensus 248 ~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 248 VFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccccccceeEEcCCC-cceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCC
Confidence 3455566666666544 334445555556666666555443221 24566778888887654 55554 4678888888
Q ss_pred EEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCC
Q 012694 316 VLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQN 370 (458)
Q Consensus 316 ~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n 370 (458)
.+++..+ +..+. ..|.++.+|+.+++..+ ++.+. .+|.+|++|+.+++..+
T Consensus 324 ~i~lp~~---v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 324 SIDLPYL---VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECCCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEEeCCc---ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 8888764 45554 35778888888888766 77664 57888888988888643
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.73 E-value=5.3e-09 Score=92.36 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=74.4
Q ss_pred CCCCCEEeccCC-cCc-----cCCccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCC---ccc
Q 012694 265 LLNLERLSIKLN-KLR-----TFPPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLT---ELP 330 (458)
Q Consensus 265 l~~L~~L~L~~n-~l~-----~l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~---~l~ 330 (458)
.++|++|++++| .+. .+...+...++|++|++++|.+.+ +...+...++|++|+|++|.++.. .+.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 444444455444 443 233455666778888888887765 345566677888888888733221 144
Q ss_pred hhhcCCCCCCEEec--cCCCCCC-----CchhhhCCCCCcEEECcCCCCC
Q 012694 331 ETIGDLINLRELDL--SNNQIRA-----LPDTFFRLENLTKLNLDQNPLV 373 (458)
Q Consensus 331 ~~l~~l~~L~~L~L--~~n~l~~-----l~~~l~~l~~L~~L~L~~n~i~ 373 (458)
..+...++|++|+| ++|.|+. +...+...++|++|+|++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 56677788999999 7898883 4466777899999999999875
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.51 E-value=2.5e-06 Score=84.30 Aligned_cols=128 Identities=16% Similarity=0.269 Sum_probs=92.2
Q ss_pred hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCcc-ccccCCCcc
Q 012694 237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLP-RAIGKLTRL 314 (458)
Q Consensus 237 ~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L 314 (458)
++.++..|+.+.+..+ +..+....+.++.+|+.+.+. +.++.+++ ++.++.+|+.+.+..+ ++.+. .+|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 5667888999988754 556778888899999999996 45666654 6788999999999754 66665 478999999
Q ss_pred cEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCC
Q 012694 315 EVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372 (458)
Q Consensus 315 ~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i 372 (458)
+.+.+..+ +..+. ..|.++.+|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 337 ~~i~ip~s---v~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 337 ERIAIPSS---VTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEECTT---CCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC----------
T ss_pred CEEEECcc---cCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCCE
Confidence 99999875 45554 46889999999999987432 14567788999998876654
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.31 E-value=2.8e-05 Score=76.18 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=41.2
Q ss_pred ccCCCCCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCCc-hhhhCCCC
Q 012694 285 ICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALP-DTFFRLEN 361 (458)
Q Consensus 285 l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~ 361 (458)
+.++..|+.+.+..+ ++.+. .++..+.+|+.+.+..+ +..++. .+.++.+|+.+.+.++.++.++ .+|.+|.+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~---i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK---VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC---CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc---ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 344455555555433 33332 24455555666655542 333322 3455666666666666666553 45566666
Q ss_pred CcEEECc
Q 012694 362 LTKLNLD 368 (458)
Q Consensus 362 L~~L~L~ 368 (458)
|+.+.|.
T Consensus 312 L~~i~lp 318 (379)
T 4h09_A 312 LSSVTLP 318 (379)
T ss_dssp CCEEECC
T ss_pred CCEEEcC
Confidence 6666664
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.21 E-value=2.3e-05 Score=76.80 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=59.7
Q ss_pred hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccccCCCCCcEEEcccCCCCCcc-ccccCCCcc
Q 012694 237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELHGLP-RAIGKLTRL 314 (458)
Q Consensus 237 ~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L 314 (458)
.+.++..|+.+.+..+ ++.+....+.++.+|+.+.+..+ ++.++ ..+.++++|+.+.+.++.++.++ .+|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3445555555555443 55555555555556666655432 33332 23455566666666555555554 355556666
Q ss_pred cEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCC
Q 012694 315 EVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRL 359 (458)
Q Consensus 315 ~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l 359 (458)
+.+.|..+ +..+. ..|.++.+|+.+.+..+ ++.+. .+|.++
T Consensus 313 ~~i~lp~~---l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 313 SSVTLPTA---LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CEEECCTT---CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred CEEEcCcc---ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 66666543 33332 23555566666655433 44442 344444
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=4.5e-07 Score=84.29 Aligned_cols=78 Identities=31% Similarity=0.349 Sum_probs=37.0
Q ss_pred CCcccceeeeecCCCCCCc---hhhcCCCCccEEEeeCCCCCCCchhhcCCC--CCcEEEcCCCCCCc-CC------chh
Q 012694 194 GLQKLEELDVSSNLLQSLP---DSIGLLLNLKVLNVSGNKLNTLPESIARCS--SLVELDASFNNLVC-LP------TNI 261 (458)
Q Consensus 194 ~l~~L~~L~L~~n~l~~l~---~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~--~L~~L~l~~n~l~~-l~------~~~ 261 (458)
++++|++|+|++|.|+.++ ..+..+++|+.|+|++|+++.+ ..+..+. +|++|++++|.+.. ++ ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3445555555555554432 2334455555555555555544 1222222 55566666665542 22 123
Q ss_pred hccCCCCCEEe
Q 012694 262 GYGLLNLERLS 272 (458)
Q Consensus 262 ~~~l~~L~~L~ 272 (458)
...+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34566666654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=3.6e-07 Score=84.96 Aligned_cols=79 Identities=30% Similarity=0.270 Sum_probs=41.7
Q ss_pred cCCCCccEEEeeCCCCCCCc---hhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCc-cCC-------c
Q 012694 216 GLLLNLKVLNVSGNKLNTLP---ESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLR-TFP-------P 283 (458)
Q Consensus 216 ~~l~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~-~l~-------~ 283 (458)
.++++|+.|+|++|+++.++ ..+..+++|+.|+|++|.++.+.. ..+..+ +|++|++++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 34566666666666666442 334456666666666666665421 111122 6666666666655 232 1
Q ss_pred cccCCCCCcEEE
Q 012694 284 SICEMRSLKYLD 295 (458)
Q Consensus 284 ~l~~l~~L~~L~ 295 (458)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244556666554
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.97 E-value=1.3e-05 Score=70.65 Aligned_cols=107 Identities=19% Similarity=0.253 Sum_probs=75.3
Q ss_pred CCCceeEEEecCC-CCC-----ccchhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCCC-----C
Q 012694 148 SGVVVETVDLADR-QLK-----LLPEAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQS-----L 211 (458)
Q Consensus 148 ~~~~L~~L~l~~~-~l~-----~l~~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~-----l 211 (458)
....|+.|+|+++ .|. .+.+++..-+.|+.|+|++|.|+ .+...+..-+.|++|+|++|.|+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4567889999885 776 35567777788888898888887 345667777888888888888873 3
Q ss_pred chhhcCCCCccEEEeeCC---CCC-----CCchhhcCCCCCcEEEcCCCCC
Q 012694 212 PDSIGLLLNLKVLNVSGN---KLN-----TLPESIARCSSLVELDASFNNL 254 (458)
Q Consensus 212 ~~~l~~l~~L~~L~l~~n---~l~-----~l~~~l~~l~~L~~L~l~~n~l 254 (458)
..++..-+.|+.|+|++| .+. .+...+..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 455666677888888755 333 2344555667777777766543
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.94 E-value=6.8e-06 Score=72.39 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=57.7
Q ss_pred hhCCCCCCcEEEcccC-CCC-----ccchhhcCCcccceeeeecCCCCC-----CchhhcCCCCccEEEeeCCCCC----
Q 012694 168 AFGRLRGLVSLNLSRN-LLE-----AMPDSIAGLQKLEELDVSSNLLQS-----LPDSIGLLLNLKVLNVSGNKLN---- 232 (458)
Q Consensus 168 ~~~~l~~L~~L~l~~n-~i~-----~l~~~l~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~---- 232 (458)
.+..-+.|+.|+|+++ .|. .+..++..-..|++|+|++|.|++ +...+..-+.|++|+|++|.|+
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 4455677888888875 776 345667777788888888888773 3455556677777777777777
Q ss_pred -CCchhhcCCCCCcEEEcCCC
Q 012694 233 -TLPESIARCSSLVELDASFN 252 (458)
Q Consensus 233 -~l~~~l~~l~~L~~L~l~~n 252 (458)
.+.+.+..-+.|++|++++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 23445555566777777654
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=1.2e-05 Score=69.40 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCcc-chhhcCC----CCCCEEeccCC-CCCCC-chhhhCCC
Q 012694 289 RSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTEL-PETIGDL----INLRELDLSNN-QIRAL-PDTFFRLE 360 (458)
Q Consensus 289 ~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l----~~L~~L~L~~n-~l~~l-~~~l~~l~ 360 (458)
..|+.||+++|.+++.. ..+..+++|++|+|++| ..+++- -..++.+ ++|++|+|++| +||+- -..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C-~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC-HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC-TTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC-CccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 35777777777766621 34567778888888877 223321 1234443 36888888887 57732 14566788
Q ss_pred CCcEEECcCCC
Q 012694 361 NLTKLNLDQNP 371 (458)
Q Consensus 361 ~L~~L~L~~n~ 371 (458)
+|++|+|++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888875
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=3.3e-05 Score=66.71 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=32.6
Q ss_pred CCcEEEcccCCCCccc-hhhcCCcccceeeeecCC-CCCC-chhhcCC----CCccEEEeeCC-CCCCC-chhhcCCCCC
Q 012694 174 GLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNL-LQSL-PDSIGLL----LNLKVLNVSGN-KLNTL-PESIARCSSL 244 (458)
Q Consensus 174 ~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~-l~~l-~~~l~~l----~~L~~L~l~~n-~l~~l-~~~l~~l~~L 244 (458)
.|+.|++++|.|+... ..+.++++|++|+|++|. |++- -..+..+ ++|++|++++| +++.- -..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 3444444444444221 233444455555555443 4321 0122221 23555555554 24411 0233445555
Q ss_pred cEEEcCCC
Q 012694 245 VELDASFN 252 (458)
Q Consensus 245 ~~L~l~~n 252 (458)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.78 E-value=0.002 Score=52.62 Aligned_cols=56 Identities=29% Similarity=0.427 Sum_probs=42.7
Q ss_pred EEEccCCCCCCC--ccchhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694 316 VLNLSSNFNDLT--ELPETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP 375 (458)
Q Consensus 316 ~L~L~~n~~~~~--~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~ 375 (458)
.++.+++ +++ .+|..+ ..+|+.|+|++|+|+.++ ..|..+++|+.|+|++|++.+.
T Consensus 12 ~v~Cs~~--~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRR--GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSS--CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCC--CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 5666664 555 666533 247899999999999986 4678899999999999999754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.75 E-value=0.0025 Score=52.13 Aligned_cols=54 Identities=24% Similarity=0.288 Sum_probs=26.0
Q ss_pred EEEeeCCCCC--CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcC
Q 012694 223 VLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278 (458)
Q Consensus 223 ~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 278 (458)
.++.+++.++ .+|..+ ..+|++|+|++|.|+.++.+.+..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3444444444 444322 12455555555555555555554555555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.27 E-value=13 Score=28.01 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=3.8
Q ss_pred CCCCCcEEEc
Q 012694 240 RCSSLVELDA 249 (458)
Q Consensus 240 ~l~~L~~L~l 249 (458)
+|++|+.+.+
T Consensus 18 ~c~~L~~i~i 27 (100)
T 2lz0_A 18 GNTVIREITV 27 (100)
T ss_dssp TCTTCCCEEE
T ss_pred CCCCCcEEEc
Confidence 3333333333
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.83 E-value=17 Score=27.40 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=15.2
Q ss_pred hhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcC
Q 012694 214 SIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDAS 250 (458)
Q Consensus 214 ~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~ 250 (458)
+|.++.+|+.+.+..+ ++.+. .+|.+|.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 4444555555554432 22221 234444444444443
Done!