Query 012695
Match_columns 458
No_of_seqs 206 out of 249
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:20:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0995 Centromere-associated 100.0 9.3E-87 2E-91 681.7 50.1 445 1-452 5-477 (581)
2 COG5185 HEC1 Protein involved 100.0 5.9E-72 1.3E-76 556.2 42.9 391 51-449 96-515 (622)
3 PF03801 Ndc80_HEC: HEC/Ndc80p 100.0 3.5E-45 7.5E-50 331.3 11.7 141 23-167 4-150 (157)
4 PRK02224 chromosome segregatio 98.1 0.0024 5.1E-08 73.4 30.2 15 87-101 146-160 (880)
5 TIGR02169 SMC_prok_A chromosom 98.1 0.003 6.6E-08 74.2 31.7 44 411-454 893-936 (1164)
6 KOG0250 DNA repair protein RAD 98.1 0.0076 1.6E-07 68.3 32.2 102 258-362 284-388 (1074)
7 TIGR02169 SMC_prok_A chromosom 98.1 0.0046 1E-07 72.7 32.3 34 90-123 535-571 (1164)
8 TIGR02168 SMC_prok_B chromosom 98.0 0.0067 1.5E-07 71.2 32.3 40 414-453 901-940 (1179)
9 TIGR02168 SMC_prok_B chromosom 98.0 0.011 2.3E-07 69.6 32.6 33 414-446 908-940 (1179)
10 PF00038 Filament: Intermediat 98.0 0.018 3.8E-07 58.0 29.9 40 413-452 215-254 (312)
11 COG1196 Smc Chromosome segrega 98.0 0.0058 1.3E-07 72.3 29.6 69 90-161 530-604 (1163)
12 COG1196 Smc Chromosome segrega 97.9 0.0055 1.2E-07 72.5 29.0 137 308-451 864-1007(1163)
13 KOG1029 Endocytic adaptor prot 97.9 0.0074 1.6E-07 65.8 26.5 146 288-451 411-579 (1118)
14 PF08317 Spc7: Spc7 kinetochor 97.8 0.039 8.4E-07 56.2 29.4 129 235-367 157-294 (325)
15 TIGR00606 rad50 rad50. This fa 97.8 0.02 4.3E-07 68.7 31.3 102 237-339 747-854 (1311)
16 KOG0996 Structural maintenance 97.8 0.12 2.7E-06 59.2 34.6 70 79-149 620-700 (1293)
17 PRK11637 AmiB activator; Provi 97.8 0.074 1.6E-06 56.2 31.7 41 238-278 79-119 (428)
18 KOG0977 Nuclear envelope prote 97.8 0.01 2.2E-07 63.6 24.6 39 414-452 296-334 (546)
19 PF00261 Tropomyosin: Tropomyo 97.8 0.0087 1.9E-07 58.2 22.3 190 236-451 38-234 (237)
20 KOG0161 Myosin class II heavy 97.8 0.024 5.3E-07 68.7 30.0 52 396-447 1093-1144(1930)
21 PRK04863 mukB cell division pr 97.7 0.017 3.6E-07 69.4 27.7 50 317-366 438-487 (1486)
22 PF10234 Cluap1: Clusterin-ass 97.7 0.0062 1.4E-07 59.8 20.0 39 120-162 1-39 (267)
23 PF09730 BicD: Microtubule-ass 97.7 0.16 3.5E-06 56.4 32.6 92 258-349 72-163 (717)
24 PRK02224 chromosome segregatio 97.7 0.088 1.9E-06 60.6 32.0 36 419-454 521-556 (880)
25 TIGR00606 rad50 rad50. This fa 97.6 0.056 1.2E-06 64.9 31.1 8 140-147 635-642 (1311)
26 PRK03918 chromosome segregatio 97.6 0.074 1.6E-06 61.1 31.0 9 25-33 27-35 (880)
27 KOG0994 Extracellular matrix g 97.6 0.029 6.3E-07 63.7 25.6 55 398-452 1691-1748(1758)
28 PRK09039 hypothetical protein; 97.6 0.1 2.3E-06 53.5 28.3 23 139-161 13-35 (343)
29 PHA02562 46 endonuclease subun 97.6 0.082 1.8E-06 57.5 29.5 123 236-359 215-350 (562)
30 PHA02562 46 endonuclease subun 97.6 0.08 1.7E-06 57.6 29.3 7 150-156 117-123 (562)
31 PF07888 CALCOCO1: Calcium bin 97.6 0.16 3.5E-06 54.6 31.7 37 411-447 368-404 (546)
32 PRK11637 AmiB activator; Provi 97.6 0.012 2.6E-07 62.1 21.9 6 241-246 47-52 (428)
33 KOG0999 Microtubule-associated 97.6 0.12 2.7E-06 54.7 28.2 99 237-335 124-222 (772)
34 KOG0161 Myosin class II heavy 97.5 0.032 6.9E-07 67.7 26.0 69 234-302 1076-1144(1930)
35 PRK03918 chromosome segregatio 97.4 0.13 2.9E-06 59.1 29.8 20 435-454 532-551 (880)
36 KOG0964 Structural maintenance 97.4 0.12 2.6E-06 58.2 27.3 48 316-363 309-356 (1200)
37 KOG0250 DNA repair protein RAD 97.4 0.29 6.4E-06 56.0 30.7 33 409-441 431-463 (1074)
38 KOG4674 Uncharacterized conser 97.4 0.064 1.4E-06 64.4 26.6 123 205-333 1234-1372(1822)
39 PF08317 Spc7: Spc7 kinetochor 97.4 0.0093 2E-07 60.7 17.3 77 245-321 213-290 (325)
40 PF07888 CALCOCO1: Calcium bin 97.4 0.31 6.7E-06 52.5 30.7 14 85-98 32-45 (546)
41 KOG0996 Structural maintenance 97.3 0.28 6E-06 56.4 29.4 16 142-157 246-261 (1293)
42 PF10174 Cast: RIM-binding pro 97.3 0.37 8E-06 54.4 30.5 112 235-356 309-420 (775)
43 PF00261 Tropomyosin: Tropomyo 97.3 0.093 2E-06 51.0 23.0 48 406-453 168-215 (237)
44 PRK01156 chromosome segregatio 97.3 0.3 6.6E-06 56.4 31.0 26 429-454 523-548 (895)
45 KOG0971 Microtubule-associated 97.3 0.31 6.7E-06 54.5 28.5 86 265-353 272-357 (1243)
46 PF10498 IFT57: Intra-flagella 97.3 0.11 2.3E-06 53.7 23.6 291 70-407 16-346 (359)
47 KOG0933 Structural maintenance 97.3 0.28 6.2E-06 55.5 27.9 29 330-358 908-936 (1174)
48 smart00787 Spc7 Spc7 kinetocho 97.3 0.27 5.9E-06 49.7 30.3 130 235-367 152-289 (312)
49 PF12128 DUF3584: Protein of u 97.2 0.42 9.1E-06 57.0 30.9 40 413-452 496-535 (1201)
50 PF00038 Filament: Intermediat 97.2 0.31 6.6E-06 49.0 27.9 123 235-364 90-213 (312)
51 KOG0933 Structural maintenance 97.2 0.41 8.8E-06 54.3 27.9 43 414-456 906-948 (1174)
52 PRK01156 chromosome segregatio 97.1 0.53 1.2E-05 54.4 30.4 29 196-224 465-493 (895)
53 PF09726 Macoilin: Transmembra 97.1 0.63 1.4E-05 52.1 29.5 36 415-450 623-658 (697)
54 KOG0995 Centromere-associated 97.1 0.57 1.2E-05 50.3 34.9 41 283-333 332-372 (581)
55 KOG0971 Microtubule-associated 97.1 0.52 1.1E-05 52.9 27.3 60 235-301 369-428 (1243)
56 PF14662 CCDC155: Coiled-coil 97.0 0.3 6.6E-06 45.5 21.2 91 204-297 26-116 (193)
57 COG1340 Uncharacterized archae 97.0 0.46 1E-05 47.2 29.9 186 236-448 57-248 (294)
58 PRK04863 mukB cell division pr 97.0 1.6 3.4E-05 53.1 33.0 37 235-275 895-931 (1486)
59 smart00787 Spc7 Spc7 kinetocho 96.9 0.06 1.3E-06 54.4 17.3 64 258-321 221-285 (312)
60 KOG0976 Rho/Rac1-interacting s 96.9 1.1 2.4E-05 49.7 28.1 44 398-441 261-304 (1265)
61 COG1579 Zn-ribbon protein, pos 96.9 0.17 3.8E-06 49.0 19.2 42 308-349 111-152 (239)
62 PF15070 GOLGA2L5: Putative go 96.8 1.1 2.4E-05 49.5 29.3 43 413-455 201-243 (617)
63 KOG4643 Uncharacterized coiled 96.8 1.4 3E-05 50.2 28.9 39 237-275 297-335 (1195)
64 PRK09039 hypothetical protein; 96.8 0.25 5.5E-06 50.7 21.2 37 308-344 138-174 (343)
65 KOG4674 Uncharacterized conser 96.8 1.6 3.4E-05 53.1 30.0 29 333-361 803-831 (1822)
66 PF09755 DUF2046: Uncharacteri 96.8 0.63 1.4E-05 46.6 22.8 98 212-309 111-214 (310)
67 PF12718 Tropomyosin_1: Tropom 96.8 0.23 4.9E-06 44.5 18.1 94 235-342 15-108 (143)
68 KOG0964 Structural maintenance 96.8 1.5 3.2E-05 49.8 28.7 121 212-336 676-807 (1200)
69 PF13851 GAS: Growth-arrest sp 96.7 0.55 1.2E-05 44.5 23.2 126 235-363 63-199 (201)
70 PF12128 DUF3584: Protein of u 96.7 2.1 4.6E-05 51.2 35.5 36 280-315 439-474 (1201)
71 COG4942 Membrane-bound metallo 96.7 1 2.2E-05 47.1 29.2 121 238-358 63-194 (420)
72 COG4942 Membrane-bound metallo 96.7 0.44 9.6E-06 49.7 21.6 6 362-367 124-129 (420)
73 PF09789 DUF2353: Uncharacteri 96.7 0.56 1.2E-05 47.4 21.8 144 272-434 82-230 (319)
74 KOG4673 Transcription factor T 96.5 1.1 2.4E-05 48.9 24.2 113 243-355 525-653 (961)
75 KOG0946 ER-Golgi vesicle-tethe 96.5 0.42 9E-06 53.1 21.2 24 332-355 803-826 (970)
76 PF09730 BicD: Microtubule-ass 96.5 2 4.3E-05 48.1 29.3 138 314-451 265-435 (717)
77 COG1579 Zn-ribbon protein, pos 96.5 0.92 2E-05 44.0 21.7 96 246-342 29-124 (239)
78 PF10174 Cast: RIM-binding pro 96.4 2.4 5.3E-05 48.0 27.7 15 109-123 152-166 (775)
79 TIGR03185 DNA_S_dndD DNA sulfu 96.4 1.7 3.7E-05 48.5 26.0 35 417-451 431-465 (650)
80 KOG4643 Uncharacterized coiled 96.4 2.6 5.7E-05 48.1 30.1 105 260-364 413-517 (1195)
81 KOG0018 Structural maintenance 96.3 0.67 1.4E-05 53.0 22.0 17 348-364 358-374 (1141)
82 PRK04778 septation ring format 96.3 2.2 4.8E-05 46.8 31.3 36 414-449 397-432 (569)
83 KOG0980 Actin-binding protein 96.3 1 2.2E-05 50.6 22.8 76 241-316 396-471 (980)
84 KOG1029 Endocytic adaptor prot 96.3 2.5 5.5E-05 46.9 25.6 62 270-334 438-499 (1118)
85 COG5185 HEC1 Protein involved 96.3 1.9 4.1E-05 45.3 24.4 42 111-156 109-150 (622)
86 KOG0018 Structural maintenance 96.2 1.5 3.3E-05 50.3 24.1 132 242-386 782-918 (1141)
87 KOG1937 Uncharacterized conser 95.9 2.6 5.7E-05 44.0 29.3 42 63-104 65-108 (521)
88 TIGR01843 type_I_hlyD type I s 95.9 2.6 5.5E-05 43.8 24.2 102 241-342 130-231 (423)
89 PF09726 Macoilin: Transmembra 95.9 1.6 3.4E-05 49.1 22.5 41 259-299 436-476 (697)
90 PRK04778 septation ring format 95.9 3.5 7.6E-05 45.3 33.5 98 246-346 308-415 (569)
91 KOG0977 Nuclear envelope prote 95.9 2.5 5.3E-05 45.8 23.0 28 428-455 342-369 (546)
92 PF14662 CCDC155: Coiled-coil 95.9 1.5 3.2E-05 40.9 23.4 43 236-278 10-52 (193)
93 TIGR00634 recN DNA repair prot 95.9 2.8 6E-05 46.0 24.1 37 210-246 185-221 (563)
94 PF12718 Tropomyosin_1: Tropom 95.9 1.3 2.7E-05 39.8 19.6 55 209-269 16-70 (143)
95 PF15066 CAGE1: Cancer-associa 95.9 2.9 6.2E-05 43.9 28.1 78 267-354 388-465 (527)
96 KOG0963 Transcription factor/C 95.8 3.6 7.8E-05 44.7 32.4 166 263-446 176-342 (629)
97 PF05667 DUF812: Protein of un 95.8 4.1 8.9E-05 44.9 27.6 42 63-104 66-109 (594)
98 KOG0994 Extracellular matrix g 95.6 5.3 0.00011 46.4 24.7 40 414-453 1689-1728(1758)
99 PF06160 EzrA: Septation ring 95.6 4.5 9.8E-05 44.4 30.2 46 407-452 386-431 (560)
100 COG3883 Uncharacterized protei 95.6 2.6 5.6E-05 41.5 20.1 69 264-335 33-101 (265)
101 COG0419 SbcC ATPase involved i 95.6 6.2 0.00013 45.9 31.2 24 243-266 528-551 (908)
102 PF07111 HCR: Alpha helical co 95.5 5 0.00011 44.3 31.9 122 241-366 162-291 (739)
103 KOG0976 Rho/Rac1-interacting s 95.5 5.5 0.00012 44.6 25.7 129 238-366 327-469 (1265)
104 KOG1962 B-cell receptor-associ 95.5 1.1 2.4E-05 42.7 16.5 63 239-301 149-211 (216)
105 PF15070 GOLGA2L5: Putative go 95.4 5.6 0.00012 44.0 30.4 30 428-457 286-315 (617)
106 PF15619 Lebercilin: Ciliary p 95.3 2.7 5.7E-05 39.7 20.7 85 250-336 63-147 (194)
107 PF04111 APG6: Autophagy prote 95.2 0.39 8.5E-06 48.7 13.7 85 265-352 46-130 (314)
108 KOG1853 LIS1-interacting prote 95.2 1 2.2E-05 43.6 15.4 46 265-310 94-139 (333)
109 PRK10869 recombination and rep 95.2 6 0.00013 43.4 27.1 108 130-246 102-217 (553)
110 PF10168 Nup88: Nuclear pore c 95.2 7 0.00015 44.2 24.6 51 285-336 609-661 (717)
111 TIGR02680 conserved hypothetic 95.2 11 0.00023 45.9 27.8 32 336-367 369-400 (1353)
112 PRK11281 hypothetical protein; 95.1 9.4 0.0002 45.2 26.1 81 269-352 80-166 (1113)
113 TIGR02680 conserved hypothetic 95.1 11 0.00025 45.7 33.3 78 258-337 279-356 (1353)
114 PF05667 DUF812: Protein of un 95.1 6.9 0.00015 43.2 27.4 10 65-74 97-106 (594)
115 KOG0612 Rho-associated, coiled 95.0 9.5 0.0002 44.7 24.8 13 312-324 726-738 (1317)
116 KOG4673 Transcription factor T 95.0 7.3 0.00016 42.9 25.8 109 235-343 447-559 (961)
117 PF15066 CAGE1: Cancer-associa 94.9 2.1 4.5E-05 44.9 17.7 95 235-336 405-507 (527)
118 TIGR03185 DNA_S_dndD DNA sulfu 94.9 8 0.00017 43.2 28.5 33 418-450 425-457 (650)
119 COG3883 Uncharacterized protei 94.9 4.3 9.2E-05 40.0 22.6 55 246-300 43-97 (265)
120 PLN03229 acetyl-coenzyme A car 94.9 8.2 0.00018 43.2 23.1 52 394-446 647-706 (762)
121 PF06160 EzrA: Septation ring 94.8 7.7 0.00017 42.6 31.9 42 413-454 378-419 (560)
122 PF13851 GAS: Growth-arrest sp 94.8 3.8 8.3E-05 38.8 19.1 109 235-356 49-160 (201)
123 TIGR01005 eps_transp_fam exopo 94.7 8.1 0.00017 43.9 24.0 73 264-336 189-266 (754)
124 PF10168 Nup88: Nuclear pore c 94.7 2 4.4E-05 48.4 18.6 18 347-364 697-714 (717)
125 KOG1853 LIS1-interacting prote 94.6 4.6 0.0001 39.2 20.3 18 236-253 54-71 (333)
126 PF10146 zf-C4H2: Zinc finger- 94.5 1.4 3E-05 42.7 14.7 51 308-358 54-104 (230)
127 KOG4302 Microtubule-associated 94.5 6 0.00013 43.9 21.1 90 265-367 106-199 (660)
128 PF13863 DUF4200: Domain of un 94.5 1.3 2.9E-05 38.2 13.5 59 235-293 33-91 (126)
129 KOG0243 Kinesin-like protein [ 94.5 9 0.0002 44.4 23.0 20 12-31 14-33 (1041)
130 PF15619 Lebercilin: Ciliary p 94.5 4.4 9.5E-05 38.2 26.1 99 216-323 14-112 (194)
131 PF11559 ADIP: Afadin- and alp 94.4 3.5 7.6E-05 37.0 16.3 55 243-297 68-122 (151)
132 PRK14011 prefoldin subunit alp 94.3 2.1 4.6E-05 38.4 14.3 35 312-346 1-35 (144)
133 KOG0980 Actin-binding protein 94.2 9.1 0.0002 43.4 21.5 65 236-300 412-476 (980)
134 COG2433 Uncharacterized conser 94.1 0.71 1.5E-05 49.9 12.6 40 39-78 143-183 (652)
135 KOG0978 E3 ubiquitin ligase in 94.1 6.9 0.00015 43.6 20.4 129 236-367 491-622 (698)
136 KOG0963 Transcription factor/C 94.0 11 0.00024 41.1 31.4 80 276-355 242-337 (629)
137 KOG0804 Cytoplasmic Zn-finger 94.0 3.1 6.8E-05 43.5 16.5 16 174-189 278-293 (493)
138 PF05701 WEMBL: Weak chloropla 94.0 11 0.00024 40.9 30.3 48 396-447 372-419 (522)
139 PF13166 AAA_13: AAA domain 94.0 13 0.00029 41.7 23.9 61 307-367 410-473 (712)
140 PF07106 TBPIP: Tat binding pr 93.9 1.3 2.8E-05 40.6 12.7 48 274-323 114-161 (169)
141 PF08614 ATG16: Autophagy prot 93.8 0.35 7.5E-06 45.5 8.9 64 236-299 118-181 (194)
142 PF12325 TMF_TATA_bd: TATA ele 93.8 3.3 7.1E-05 36.0 14.1 14 308-321 69-82 (120)
143 PF10234 Cluap1: Clusterin-ass 93.8 7.5 0.00016 38.4 23.8 64 75-138 3-78 (267)
144 COG0419 SbcC ATPase involved i 93.8 17 0.00036 42.4 28.7 34 414-447 410-443 (908)
145 KOG0612 Rho-associated, coiled 93.8 18 0.00038 42.6 28.3 27 66-94 291-317 (1317)
146 KOG0946 ER-Golgi vesicle-tethe 93.4 16 0.00035 41.1 21.6 59 239-297 648-706 (970)
147 PF09755 DUF2046: Uncharacteri 93.4 9.5 0.00021 38.4 31.5 87 235-324 85-173 (310)
148 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.4 5.1 0.00011 35.2 17.9 93 236-335 19-119 (132)
149 PF10473 CENP-F_leu_zip: Leuci 93.4 5.5 0.00012 35.6 18.8 63 236-298 33-95 (140)
150 PF04111 APG6: Autophagy prote 93.3 1.6 3.4E-05 44.3 13.2 29 308-336 107-135 (314)
151 PF12325 TMF_TATA_bd: TATA ele 93.3 4.2 9E-05 35.4 13.8 20 314-333 68-87 (120)
152 PF05010 TACC: Transforming ac 93.2 7.9 0.00017 36.9 22.3 132 235-366 70-206 (207)
153 KOG0962 DNA repair protein RAD 93.2 23 0.00051 42.1 27.5 34 311-344 315-348 (1294)
154 PF09762 KOG2701: Coiled-coil 93.1 2.9 6.4E-05 39.0 13.6 84 66-158 3-104 (182)
155 TIGR00634 recN DNA repair prot 93.1 11 0.00024 41.3 20.4 18 348-365 303-320 (563)
156 PF14735 HAUS4: HAUS augmin-li 93.1 9.2 0.0002 37.2 17.7 110 252-365 107-225 (238)
157 PRK10929 putative mechanosensi 93.1 24 0.00051 41.9 24.3 24 303-326 169-192 (1109)
158 KOG4677 Golgi integral membran 93.0 14 0.00029 38.9 25.0 40 300-339 316-355 (554)
159 KOG0243 Kinesin-like protein [ 93.0 22 0.00048 41.4 24.8 77 236-312 457-533 (1041)
160 PF15254 CCDC14: Coiled-coil d 92.9 16 0.00035 41.0 20.5 140 205-350 392-537 (861)
161 PF13514 AAA_27: AAA domain 92.8 26 0.00057 41.7 32.1 26 133-161 591-616 (1111)
162 TIGR03007 pepcterm_ChnLen poly 92.7 16 0.00035 39.1 22.6 33 269-301 204-236 (498)
163 PF10481 CENP-F_N: Cenp-F N-te 92.7 11 0.00024 37.1 19.3 41 314-354 88-128 (307)
164 KOG0999 Microtubule-associated 92.7 17 0.00036 39.3 25.3 76 238-313 146-224 (772)
165 PRK11281 hypothetical protein; 92.6 27 0.00059 41.5 28.0 83 246-328 126-213 (1113)
166 KOG0978 E3 ubiquitin ligase in 92.6 20 0.00044 40.0 32.0 57 395-451 554-610 (698)
167 PF05622 HOOK: HOOK protein; 92.6 0.034 7.4E-07 62.5 0.0 43 61-103 72-122 (713)
168 PRK03947 prefoldin subunit alp 92.4 5.5 0.00012 35.2 14.0 36 416-451 103-138 (140)
169 KOG1937 Uncharacterized conser 92.4 16 0.00036 38.4 24.9 28 112-139 67-94 (521)
170 KOG0804 Cytoplasmic Zn-finger 92.4 7.1 0.00015 41.0 16.2 38 258-295 371-408 (493)
171 COG2433 Uncharacterized conser 92.3 2.6 5.7E-05 45.7 13.5 29 51-79 263-291 (652)
172 TIGR01843 type_I_hlyD type I s 92.2 8.1 0.00017 40.1 17.3 8 183-190 100-107 (423)
173 COG4717 Uncharacterized conser 92.2 25 0.00054 40.0 28.0 37 413-449 773-809 (984)
174 PF10146 zf-C4H2: Zinc finger- 92.1 4.5 9.7E-05 39.2 13.9 46 255-300 25-70 (230)
175 PF05266 DUF724: Protein of un 92.1 11 0.00023 35.5 19.7 49 136-186 25-81 (190)
176 PF10186 Atg14: UV radiation r 92.0 10 0.00022 37.4 17.0 40 261-300 69-108 (302)
177 KOG0240 Kinesin (SMY1 subfamil 91.8 22 0.00048 38.6 20.3 77 261-337 413-493 (607)
178 PF11559 ADIP: Afadin- and alp 91.7 6.2 0.00013 35.3 13.7 56 237-292 55-110 (151)
179 PF04949 Transcrip_act: Transc 91.6 9.6 0.00021 34.1 14.9 93 244-349 27-119 (159)
180 KOG1962 B-cell receptor-associ 91.5 8.6 0.00019 36.8 14.7 81 286-366 130-210 (216)
181 PF06005 DUF904: Protein of un 91.5 5.6 0.00012 31.4 11.3 61 201-267 5-65 (72)
182 KOG0979 Structural maintenance 91.4 33 0.00071 39.7 24.5 20 235-254 203-222 (1072)
183 PF11932 DUF3450: Protein of u 91.4 8.8 0.00019 37.5 15.4 39 328-366 131-169 (251)
184 TIGR00998 8a0101 efflux pump m 91.2 18 0.00039 36.4 18.7 61 268-328 107-167 (334)
185 PRK10884 SH3 domain-containing 90.9 4.6 9.9E-05 38.5 12.4 28 269-296 118-145 (206)
186 PF14257 DUF4349: Domain of un 90.7 1.2 2.7E-05 43.7 8.7 64 272-336 128-191 (262)
187 COG1340 Uncharacterized archae 90.7 20 0.00043 35.9 30.8 200 236-453 36-246 (294)
188 PF02403 Seryl_tRNA_N: Seryl-t 90.6 2.9 6.3E-05 35.2 9.8 72 268-339 28-99 (108)
189 PF06005 DUF904: Protein of un 90.6 7.2 0.00016 30.8 11.5 25 259-283 8-32 (72)
190 PF11932 DUF3450: Protein of u 90.6 17 0.00037 35.5 16.5 44 236-279 51-94 (251)
191 PF13870 DUF4201: Domain of un 90.5 14 0.00031 34.0 16.9 72 264-335 100-173 (177)
192 PF04849 HAP1_N: HAP1 N-termin 90.4 22 0.00047 35.9 17.4 89 238-339 192-280 (306)
193 COG0497 RecN ATPase involved i 90.4 31 0.00067 37.7 26.0 94 284-377 298-400 (557)
194 PF05557 MAD: Mitotic checkpoi 90.2 1 2.3E-05 50.8 8.7 18 434-451 565-582 (722)
195 PF09789 DUF2353: Uncharacteri 90.1 23 0.0005 35.9 25.8 44 293-336 175-218 (319)
196 KOG2129 Uncharacterized conser 89.9 27 0.00059 36.4 22.4 21 234-254 136-156 (552)
197 PF15188 CCDC-167: Coiled-coil 89.9 2.9 6.2E-05 34.1 8.5 62 276-337 5-66 (85)
198 PF02050 FliJ: Flagellar FliJ 89.9 10 0.00022 31.5 13.1 78 268-345 4-83 (123)
199 PRK10884 SH3 domain-containing 89.9 8.1 0.00018 36.8 13.1 35 265-299 135-169 (206)
200 TIGR03007 pepcterm_ChnLen poly 89.8 31 0.00068 36.9 25.8 83 283-365 275-378 (498)
201 PRK10476 multidrug resistance 89.4 27 0.00058 35.6 18.8 67 271-337 116-182 (346)
202 PF03915 AIP3: Actin interacti 89.4 16 0.00035 38.6 16.0 69 276-344 213-286 (424)
203 PF05557 MAD: Mitotic checkpoi 89.3 0.11 2.4E-06 58.5 0.0 12 347-358 296-307 (722)
204 PF00769 ERM: Ezrin/radixin/mo 89.2 23 0.0005 34.6 18.1 115 238-355 9-123 (246)
205 PF06785 UPF0242: Uncharacteri 89.2 27 0.00059 35.4 18.2 47 243-289 122-168 (401)
206 PF01576 Myosin_tail_1: Myosin 89.0 0.12 2.6E-06 59.3 0.0 25 203-227 324-348 (859)
207 KOG4809 Rab6 GTPase-interactin 88.7 16 0.00036 39.3 15.3 72 235-306 339-417 (654)
208 PRK15422 septal ring assembly 88.6 9.2 0.0002 30.5 10.3 62 267-338 9-70 (79)
209 PF01576 Myosin_tail_1: Myosin 88.6 0.13 2.9E-06 59.0 0.0 36 418-453 353-388 (859)
210 PF10498 IFT57: Intra-flagella 88.6 29 0.00062 36.0 16.9 47 52-101 63-111 (359)
211 PF05911 DUF869: Plant protein 88.5 51 0.0011 37.6 22.8 57 308-364 653-709 (769)
212 COG4372 Uncharacterized protei 88.5 33 0.00072 35.5 29.5 35 420-454 251-285 (499)
213 KOG0249 LAR-interacting protei 88.5 40 0.00088 37.6 18.3 38 415-452 224-261 (916)
214 PF03962 Mnd1: Mnd1 family; I 88.1 21 0.00045 33.5 14.4 86 237-323 65-151 (188)
215 TIGR03017 EpsF chain length de 88.0 38 0.00083 35.6 20.7 22 344-365 344-365 (444)
216 PF05622 HOOK: HOOK protein; 87.9 0.16 3.4E-06 57.3 0.0 43 60-107 4-48 (713)
217 PF08946 Osmo_CC: Osmosensory 87.7 1.1 2.4E-05 31.7 4.1 34 417-450 8-41 (46)
218 KOG4302 Microtubule-associated 87.5 39 0.00085 37.7 18.0 89 239-334 94-187 (660)
219 PRK07720 fliJ flagellar biosyn 87.5 20 0.00043 31.8 17.0 99 260-358 14-118 (146)
220 PF12252 SidE: Dot/Icm substra 87.2 67 0.0014 37.6 20.1 148 210-361 1031-1212(1439)
221 COG1730 GIM5 Predicted prefold 87.2 22 0.00047 32.0 14.5 39 406-444 100-138 (145)
222 KOG0962 DNA repair protein RAD 87.0 76 0.0017 38.0 30.2 72 278-349 790-861 (1294)
223 PF05701 WEMBL: Weak chloropla 86.7 52 0.0011 35.8 31.2 31 421-451 488-518 (522)
224 PF05546 She9_MDM33: She9 / Md 86.6 30 0.00064 32.9 15.5 97 258-360 42-139 (207)
225 TIGR03545 conserved hypothetic 86.6 18 0.00039 39.7 14.8 99 260-367 173-273 (555)
226 PF07200 Mod_r: Modifier of ru 86.5 15 0.00033 32.6 12.2 52 258-309 44-97 (150)
227 COG4372 Uncharacterized protei 86.5 44 0.00095 34.7 31.3 60 238-297 120-179 (499)
228 PF03148 Tektin: Tektin family 86.3 46 0.00099 34.7 25.5 43 408-450 252-294 (384)
229 PF13747 DUF4164: Domain of un 86.3 17 0.00037 29.8 11.1 49 307-355 39-87 (89)
230 PF03915 AIP3: Actin interacti 86.3 19 0.00041 38.1 14.2 66 204-269 210-282 (424)
231 TIGR02473 flagell_FliJ flagell 86.2 22 0.00047 30.9 16.9 103 255-357 6-114 (141)
232 COG4026 Uncharacterized protei 86.1 11 0.00024 36.0 11.1 53 246-298 133-185 (290)
233 PF07889 DUF1664: Protein of u 86.1 17 0.00037 31.9 11.6 23 309-331 98-120 (126)
234 PF06008 Laminin_I: Laminin Do 85.9 37 0.0008 33.3 29.2 89 235-323 46-139 (264)
235 KOG4809 Rab6 GTPase-interactin 85.5 58 0.0013 35.3 24.0 26 112-140 204-229 (654)
236 smart00806 AIP3 Actin interact 85.5 19 0.00041 37.8 13.5 69 204-272 214-289 (426)
237 PF05266 DUF724: Protein of un 85.5 28 0.00061 32.7 13.7 9 140-148 10-18 (190)
238 KOG0979 Structural maintenance 85.0 83 0.0018 36.6 27.8 35 414-448 863-897 (1072)
239 PF15397 DUF4618: Domain of un 84.8 42 0.00092 33.0 27.2 31 415-445 194-224 (258)
240 TIGR03017 EpsF chain length de 84.8 55 0.0012 34.4 22.2 36 263-298 165-200 (444)
241 smart00806 AIP3 Actin interact 84.6 57 0.0012 34.4 21.9 62 282-343 223-289 (426)
242 PRK00409 recombination and DNA 84.6 50 0.0011 37.9 17.7 57 239-295 504-560 (782)
243 PRK10361 DNA recombination pro 84.5 63 0.0014 34.7 19.3 25 316-340 167-191 (475)
244 PF05278 PEARLI-4: Arabidopsis 84.5 45 0.00097 33.0 18.9 73 258-333 189-261 (269)
245 TIGR01005 eps_transp_fam exopo 84.4 80 0.0017 35.9 22.9 34 269-302 237-270 (754)
246 PF14992 TMCO5: TMCO5 family 84.0 20 0.00044 35.6 12.4 22 207-228 25-46 (280)
247 COG4477 EzrA Negative regulato 84.0 68 0.0015 34.7 25.9 81 282-365 353-433 (570)
248 PRK15422 septal ring assembly 83.8 20 0.00044 28.6 10.6 29 200-228 4-32 (79)
249 KOG2751 Beclin-like protein [S 83.5 43 0.00093 35.2 15.0 28 201-228 144-171 (447)
250 PF10481 CENP-F_N: Cenp-F N-te 83.5 39 0.00085 33.4 13.8 30 335-364 95-127 (307)
251 PF02050 FliJ: Flagellar FliJ 83.4 24 0.00053 29.2 13.5 52 248-299 45-96 (123)
252 COG0497 RecN ATPase involved i 83.3 76 0.0016 34.8 19.4 48 389-437 325-372 (557)
253 PRK05689 fliJ flagellar biosyn 83.2 32 0.0007 30.4 16.9 105 254-358 8-118 (147)
254 KOG4360 Uncharacterized coiled 83.0 73 0.0016 34.3 17.6 56 241-299 194-249 (596)
255 PF05010 TACC: Transforming ac 82.9 45 0.00097 31.8 28.7 28 236-263 25-52 (207)
256 TIGR02971 heterocyst_DevB ABC 82.2 58 0.0013 32.7 16.7 70 261-330 89-158 (327)
257 KOG1655 Protein involved in va 82.1 45 0.00098 31.4 14.6 120 236-366 28-150 (218)
258 PLN02939 transferase, transfer 82.0 1.1E+02 0.0024 35.8 26.8 83 276-358 226-312 (977)
259 PF10186 Atg14: UV radiation r 82.0 54 0.0012 32.2 18.0 45 238-282 60-104 (302)
260 PF07106 TBPIP: Tat binding pr 81.8 17 0.00036 33.2 10.5 57 271-335 81-137 (169)
261 PF13166 AAA_13: AAA domain 81.7 96 0.0021 34.8 24.5 13 57-69 28-40 (712)
262 COG3879 Uncharacterized protei 81.6 14 0.00031 36.0 10.1 36 349-384 92-128 (247)
263 PF04912 Dynamitin: Dynamitin 81.5 49 0.0011 34.5 15.1 20 209-228 263-282 (388)
264 PF04728 LPP: Lipoprotein leuc 81.4 13 0.00028 27.8 7.6 52 307-358 3-54 (56)
265 cd00176 SPEC Spectrin repeats, 81.3 42 0.0009 30.4 13.9 210 202-421 2-211 (213)
266 COG2882 FliJ Flagellar biosynt 81.2 42 0.0009 30.3 15.9 86 257-342 11-99 (148)
267 PRK09343 prefoldin subunit bet 81.2 28 0.0006 30.2 11.0 34 323-356 80-113 (121)
268 KOG2991 Splicing regulator [RN 81.0 33 0.00071 33.6 12.2 24 20-43 22-47 (330)
269 KOG4807 F-actin binding protei 80.7 76 0.0016 33.0 23.1 58 242-299 394-451 (593)
270 PF06156 DUF972: Protein of un 80.6 12 0.00025 31.9 8.2 47 255-301 8-54 (107)
271 TIGR00293 prefoldin, archaeal 80.5 37 0.00079 29.2 13.0 31 415-445 94-124 (126)
272 PRK11519 tyrosine kinase; Prov 80.3 42 0.00092 38.0 15.1 14 145-158 207-220 (719)
273 TIGR01069 mutS2 MutS2 family p 80.3 67 0.0014 36.8 16.6 6 72-77 348-353 (771)
274 KOG0249 LAR-interacting protei 80.3 1.1E+02 0.0023 34.5 17.2 22 260-281 161-182 (916)
275 PF06785 UPF0242: Uncharacteri 80.2 72 0.0016 32.5 17.3 58 237-294 102-159 (401)
276 PRK04325 hypothetical protein; 80.1 13 0.00028 29.4 7.8 51 252-302 6-56 (74)
277 PF03938 OmpH: Outer membrane 79.7 44 0.00096 29.7 14.5 55 276-330 43-99 (158)
278 PLN02678 seryl-tRNA synthetase 79.5 15 0.00033 39.2 10.5 65 272-336 36-100 (448)
279 PF13870 DUF4201: Domain of un 79.4 51 0.0011 30.2 20.9 51 248-298 63-113 (177)
280 PF07851 TMPIT: TMPIT-like pro 79.4 24 0.00052 36.0 11.4 55 241-295 4-58 (330)
281 PRK09841 cryptic autophosphory 79.2 38 0.00082 38.4 14.3 12 175-186 245-256 (726)
282 PRK02793 phi X174 lysis protei 79.2 17 0.00037 28.6 8.2 49 405-453 6-54 (72)
283 PRK04406 hypothetical protein; 79.2 20 0.00044 28.4 8.7 50 404-453 8-57 (75)
284 PF05911 DUF869: Plant protein 79.1 1.2E+02 0.0027 34.6 30.6 49 403-451 261-309 (769)
285 PLN03229 acetyl-coenzyme A car 79.1 1.2E+02 0.0026 34.3 24.0 35 395-430 694-728 (762)
286 PF04102 SlyX: SlyX; InterPro 79.1 13 0.00029 28.8 7.5 50 405-454 2-51 (69)
287 KOG1899 LAR transmembrane tyro 78.9 1.1E+02 0.0024 33.8 16.6 153 195-356 107-266 (861)
288 TIGR02231 conserved hypothetic 78.8 26 0.00056 38.0 12.4 7 215-221 93-99 (525)
289 PF04899 MbeD_MobD: MbeD/MobD 78.8 30 0.00064 27.2 9.6 64 390-453 4-67 (70)
290 PF04102 SlyX: SlyX; InterPro 78.8 13 0.00028 28.9 7.4 48 255-302 4-51 (69)
291 TIGR01000 bacteriocin_acc bact 78.7 96 0.0021 33.0 22.2 25 308-332 237-261 (457)
292 COG3074 Uncharacterized protei 78.7 29 0.00063 27.0 10.2 50 278-337 20-69 (79)
293 smart00338 BRLZ basic region l 78.7 19 0.00041 27.3 8.2 45 408-452 20-64 (65)
294 PF06721 DUF1204: Protein of u 78.6 58 0.0012 30.4 13.4 44 316-367 79-122 (228)
295 PLN02939 transferase, transfer 78.6 1.4E+02 0.0031 35.0 27.2 119 235-360 227-345 (977)
296 PRK02119 hypothetical protein; 78.5 19 0.00042 28.4 8.3 50 404-453 6-55 (73)
297 PF06810 Phage_GP20: Phage min 78.4 20 0.00044 32.5 9.6 50 269-325 20-69 (155)
298 PF09738 DUF2051: Double stran 78.4 19 0.0004 36.4 10.2 27 308-334 141-167 (302)
299 PF10458 Val_tRNA-synt_C: Valy 78.1 12 0.00025 28.8 6.9 58 274-331 2-63 (66)
300 PF09763 Sec3_C: Exocyst compl 78.1 48 0.001 37.4 14.6 20 294-313 90-109 (701)
301 PRK04406 hypothetical protein; 78.1 23 0.00049 28.1 8.6 49 253-301 9-57 (75)
302 PF00769 ERM: Ezrin/radixin/mo 77.8 73 0.0016 31.1 16.5 13 418-430 186-198 (246)
303 KOG4807 F-actin binding protei 77.6 94 0.002 32.3 22.9 43 281-325 361-404 (593)
304 TIGR03752 conj_TIGR03752 integ 77.6 26 0.00057 37.3 11.3 21 314-334 109-129 (472)
305 PF02841 GBP_C: Guanylate-bind 77.6 81 0.0018 31.5 18.4 25 129-154 14-38 (297)
306 KOG1003 Actin filament-coating 77.5 64 0.0014 30.4 24.5 40 414-453 165-204 (205)
307 PF09731 Mitofilin: Mitochondr 77.5 1.2E+02 0.0025 33.4 20.3 32 310-341 367-398 (582)
308 PF05483 SCP-1: Synaptonemal c 77.5 1.3E+02 0.0027 33.7 31.6 118 245-362 216-344 (786)
309 PF15175 SPATA24: Spermatogene 77.4 53 0.0012 29.5 11.5 94 204-303 11-113 (153)
310 COG1842 PspA Phage shock prote 77.3 72 0.0016 30.8 15.9 30 415-444 114-143 (225)
311 PF05615 THOC7: Tho complex su 77.3 43 0.00093 29.5 11.3 57 247-304 73-129 (139)
312 PF13747 DUF4164: Domain of un 77.2 39 0.00084 27.7 10.3 50 237-286 35-84 (89)
313 PF07200 Mod_r: Modifier of ru 77.1 53 0.0011 29.2 13.7 109 242-362 8-116 (150)
314 PRK10947 global DNA-binding tr 77.1 17 0.00036 32.3 8.4 45 265-309 31-75 (135)
315 PF09787 Golgin_A5: Golgin sub 77.0 1.2E+02 0.0025 33.0 22.3 22 205-226 114-135 (511)
316 KOG2129 Uncharacterized conser 77.0 1E+02 0.0022 32.4 17.2 67 235-301 180-271 (552)
317 PF04977 DivIC: Septum formati 76.9 14 0.00031 28.7 7.4 44 272-315 20-63 (80)
318 PF03962 Mnd1: Mnd1 family; I 76.9 65 0.0014 30.1 14.7 105 203-310 72-177 (188)
319 PF09787 Golgin_A5: Golgin sub 76.8 1.2E+02 0.0025 33.0 25.8 51 308-358 275-325 (511)
320 PRK00736 hypothetical protein; 76.7 22 0.00049 27.6 8.1 46 256-301 6-51 (68)
321 PF08172 CASP_C: CASP C termin 76.6 35 0.00075 33.5 11.3 25 315-339 108-132 (248)
322 PF14915 CCDC144C: CCDC144C pr 76.5 88 0.0019 31.4 27.0 166 282-453 62-239 (305)
323 PF08647 BRE1: BRE1 E3 ubiquit 76.1 44 0.00094 27.7 12.7 69 236-304 5-73 (96)
324 PRK05431 seryl-tRNA synthetase 76.1 27 0.00059 36.9 11.3 29 273-301 32-60 (425)
325 PRK04325 hypothetical protein; 75.9 24 0.00052 27.9 8.2 50 405-454 7-56 (74)
326 PF09744 Jnk-SapK_ap_N: JNK_SA 75.5 65 0.0014 29.4 15.9 36 179-214 5-40 (158)
327 PRK00295 hypothetical protein; 75.5 24 0.00052 27.4 8.0 48 406-453 4-51 (68)
328 PF03904 DUF334: Domain of unk 75.4 80 0.0017 30.4 14.5 48 314-361 43-90 (230)
329 PRK10328 DNA binding protein, 75.4 20 0.00044 31.8 8.5 44 266-309 32-75 (134)
330 PRK11546 zraP zinc resistance 75.2 26 0.00057 31.4 9.1 30 295-324 77-106 (143)
331 COG0216 PrfA Protein chain rel 75.2 45 0.00097 34.1 11.7 45 214-258 7-57 (363)
332 PF12761 End3: Actin cytoskele 75.0 19 0.00042 33.9 8.6 29 413-441 166-194 (195)
333 PF15035 Rootletin: Ciliary ro 74.9 73 0.0016 29.7 14.1 35 308-342 89-123 (182)
334 PF14197 Cep57_CLD_2: Centroso 74.8 38 0.00082 26.4 10.2 9 242-250 6-14 (69)
335 PF08647 BRE1: BRE1 E3 ubiquit 74.6 48 0.001 27.5 13.6 41 309-353 54-94 (96)
336 PF04380 BMFP: Membrane fusoge 74.6 11 0.00023 30.2 6.0 31 420-450 49-79 (79)
337 PRK10636 putative ABC transpor 74.4 25 0.00055 39.2 11.0 68 273-340 560-631 (638)
338 PF14197 Cep57_CLD_2: Centroso 74.3 39 0.00085 26.3 9.0 15 308-322 48-62 (69)
339 PRK13169 DNA replication intia 74.3 22 0.00049 30.4 8.2 45 256-300 9-53 (110)
340 PF10267 Tmemb_cc2: Predicted 74.3 1.2E+02 0.0026 31.9 16.1 75 248-327 244-318 (395)
341 PF01920 Prefoldin_2: Prefoldi 74.2 48 0.001 27.2 10.9 31 311-341 66-96 (106)
342 PRK09841 cryptic autophosphory 74.1 1.3E+02 0.0028 34.2 16.7 23 309-331 341-363 (726)
343 PRK02793 phi X174 lysis protei 74.0 29 0.00062 27.3 8.2 47 255-301 8-54 (72)
344 PF06120 Phage_HK97_TLTM: Tail 73.6 1.1E+02 0.0023 31.0 18.2 52 309-361 150-202 (301)
345 PF02994 Transposase_22: L1 tr 73.3 9.2 0.0002 39.7 6.8 9 378-386 245-253 (370)
346 PF10211 Ax_dynein_light: Axon 73.2 82 0.0018 29.5 13.6 20 138-157 28-47 (189)
347 PF00170 bZIP_1: bZIP transcri 73.1 29 0.00062 26.3 7.9 42 410-451 22-63 (64)
348 KOG4657 Uncharacterized conser 73.1 92 0.002 30.0 14.8 96 197-302 31-126 (246)
349 PF08172 CASP_C: CASP C termin 73.1 52 0.0011 32.3 11.5 55 391-445 77-131 (248)
350 PRK00409 recombination and DNA 73.1 1.7E+02 0.0036 33.7 17.3 13 68-80 349-361 (782)
351 PRK00295 hypothetical protein; 72.8 31 0.00067 26.8 8.0 45 257-301 7-51 (68)
352 PF06717 DUF1202: Protein of u 72.7 1.1E+02 0.0023 30.6 15.0 55 398-452 249-307 (308)
353 PRK11578 macrolide transporter 72.2 79 0.0017 32.4 13.5 58 273-330 110-167 (370)
354 COG4477 EzrA Negative regulato 72.2 1.5E+02 0.0033 32.2 32.5 192 231-452 226-434 (570)
355 KOG3091 Nuclear pore complex, 72.2 1.5E+02 0.0032 32.0 17.3 65 235-303 377-448 (508)
356 PRK09343 prefoldin subunit bet 72.1 65 0.0014 27.9 13.0 48 396-450 67-114 (121)
357 TIGR02231 conserved hypothetic 72.1 53 0.0012 35.6 12.7 18 319-336 136-153 (525)
358 PRK02119 hypothetical protein; 72.0 40 0.00086 26.6 8.6 46 256-301 10-55 (73)
359 PRK11519 tyrosine kinase; Prov 71.8 1.1E+02 0.0024 34.6 15.5 21 311-331 343-363 (719)
360 PF09304 Cortex-I_coil: Cortex 71.7 62 0.0013 27.5 15.2 60 239-298 14-73 (107)
361 PF04728 LPP: Lipoprotein leuc 71.7 36 0.00079 25.5 7.7 15 287-301 35-49 (56)
362 PF14915 CCDC144C: CCDC144C pr 71.6 1.2E+02 0.0025 30.6 29.2 124 311-450 134-264 (305)
363 cd00584 Prefoldin_alpha Prefol 71.3 67 0.0015 27.7 13.3 27 313-339 5-31 (129)
364 KOG0993 Rab5 GTPase effector R 71.3 1.4E+02 0.003 31.3 27.8 81 196-276 96-176 (542)
365 PF14282 FlxA: FlxA-like prote 70.7 18 0.00039 30.6 6.8 37 416-452 28-68 (106)
366 KOG1003 Actin filament-coating 70.5 97 0.0021 29.2 21.7 33 420-452 164-196 (205)
367 PRK00736 hypothetical protein; 70.5 37 0.0008 26.3 8.0 47 407-453 5-51 (68)
368 PRK10246 exonuclease subunit S 70.5 2.4E+02 0.0051 33.6 29.5 31 419-449 827-857 (1047)
369 TIGR02338 gimC_beta prefoldin, 70.4 65 0.0014 27.2 12.0 25 312-336 8-32 (110)
370 cd00632 Prefoldin_beta Prefold 70.3 63 0.0014 27.0 12.9 39 257-295 65-103 (105)
371 TIGR01069 mutS2 MutS2 family p 70.1 2.1E+02 0.0045 32.9 17.4 9 291-299 580-588 (771)
372 PRK00846 hypothetical protein; 70.1 42 0.00091 26.8 8.3 46 254-299 12-57 (77)
373 KOG4360 Uncharacterized coiled 70.0 82 0.0018 33.9 12.7 82 209-296 221-302 (596)
374 COG3206 GumC Uncharacterized p 70.0 1.6E+02 0.0034 31.4 16.1 58 308-365 343-403 (458)
375 PF09738 DUF2051: Double stran 69.7 1.3E+02 0.0028 30.4 19.9 27 311-337 137-163 (302)
376 TIGR01730 RND_mfp RND family e 69.6 52 0.0011 32.5 11.2 58 275-332 70-127 (322)
377 KOG2264 Exostosin EXT1L [Signa 69.5 20 0.00043 38.9 8.1 53 236-295 95-147 (907)
378 PF04012 PspA_IM30: PspA/IM30 69.5 1E+02 0.0022 29.1 19.0 12 396-407 165-176 (221)
379 PF05529 Bap31: B-cell recepto 69.4 76 0.0017 29.5 11.5 12 142-153 47-58 (192)
380 PF08826 DMPK_coil: DMPK coile 69.3 48 0.001 25.3 8.7 41 246-286 16-56 (61)
381 cd07651 F-BAR_PombeCdc15_like 69.1 1.1E+02 0.0024 29.4 17.6 51 276-328 121-171 (236)
382 PF10224 DUF2205: Predicted co 69.1 54 0.0012 26.4 8.8 43 260-302 21-63 (80)
383 KOG4403 Cell surface glycoprot 68.9 1.6E+02 0.0035 31.1 17.0 17 140-157 133-149 (575)
384 PF14193 DUF4315: Domain of un 68.8 59 0.0013 26.4 9.0 28 288-315 32-59 (83)
385 PF00170 bZIP_1: bZIP transcri 68.8 31 0.00068 26.1 7.2 38 252-289 23-60 (64)
386 TIGR03752 conj_TIGR03752 integ 68.8 56 0.0012 34.9 11.3 25 312-336 114-138 (472)
387 PF05791 Bacillus_HBL: Bacillu 68.8 40 0.00087 31.3 9.4 28 292-322 151-178 (184)
388 COG1382 GimC Prefoldin, chaper 68.8 78 0.0017 27.5 13.0 33 307-339 6-38 (119)
389 PF04582 Reo_sigmaC: Reovirus 68.6 10 0.00022 38.6 5.6 62 238-299 32-93 (326)
390 PF11853 DUF3373: Protein of u 68.5 4.5 9.8E-05 43.3 3.3 55 306-377 24-78 (489)
391 KOG3091 Nuclear pore complex, 68.4 1.8E+02 0.0038 31.4 19.3 19 174-192 267-285 (508)
392 KOG3809 Microtubule-binding pr 68.4 1.7E+02 0.0036 31.1 14.9 69 274-342 505-574 (583)
393 PF04582 Reo_sigmaC: Reovirus 68.4 6.3 0.00014 40.0 4.1 26 317-342 129-154 (326)
394 smart00502 BBC B-Box C-termina 68.1 70 0.0015 26.7 14.1 92 203-300 3-96 (127)
395 COG2348 Peptidoglycan interpep 67.8 25 0.00055 37.0 8.5 86 55-154 79-168 (418)
396 PHA01750 hypothetical protein 67.7 55 0.0012 25.3 8.4 53 398-452 21-73 (75)
397 PRK00846 hypothetical protein; 67.7 49 0.0011 26.5 8.2 51 404-454 10-60 (77)
398 PF08581 Tup_N: Tup N-terminal 67.7 63 0.0014 25.9 10.9 19 236-254 6-24 (79)
399 COG4026 Uncharacterized protei 67.6 1.1E+02 0.0023 29.6 11.7 31 108-138 15-47 (290)
400 TIGR01000 bacteriocin_acc bact 67.6 1.7E+02 0.0038 31.0 23.8 30 424-453 287-316 (457)
401 PF12329 TMF_DNA_bd: TATA elem 67.5 60 0.0013 25.6 10.1 14 212-225 10-23 (74)
402 KOG4460 Nuclear pore complex, 67.1 2E+02 0.0043 31.5 19.5 40 121-160 396-437 (741)
403 PF14931 IFT20: Intraflagellar 67.0 86 0.0019 27.2 13.6 28 238-265 24-51 (120)
404 PTZ00446 vacuolar sorting prot 66.9 1.1E+02 0.0025 28.7 17.7 117 204-330 31-153 (191)
405 cd07666 BAR_SNX7 The Bin/Amphi 66.9 1.3E+02 0.0029 29.4 20.6 20 308-327 178-197 (243)
406 PF13514 AAA_27: AAA domain 66.7 2.8E+02 0.0061 33.1 31.3 54 267-320 678-739 (1111)
407 KOG0288 WD40 repeat protein Ti 66.7 1.7E+02 0.0038 30.7 14.6 25 307-331 83-107 (459)
408 PF03999 MAP65_ASE1: Microtubu 66.6 35 0.00076 37.9 10.0 96 90-190 145-245 (619)
409 PF07989 Microtub_assoc: Micro 66.6 63 0.0014 25.6 9.5 55 286-342 17-71 (75)
410 PF10212 TTKRSYEDQ: Predicted 66.5 1.5E+02 0.0033 32.1 14.0 92 253-354 418-513 (518)
411 PRK10869 recombination and rep 66.4 2.1E+02 0.0045 31.5 27.3 84 347-446 297-381 (553)
412 PLN02320 seryl-tRNA synthetase 66.3 36 0.00078 36.8 9.6 50 284-334 108-157 (502)
413 PF03980 Nnf1: Nnf1 ; InterPr 66.2 78 0.0017 26.5 11.6 75 341-423 29-103 (109)
414 PF10226 DUF2216: Uncharacteri 66.2 1.2E+02 0.0025 28.5 13.0 29 246-274 91-120 (195)
415 KOG0239 Kinesin (KAR3 subfamil 66.1 2E+02 0.0042 32.5 15.6 128 200-327 186-313 (670)
416 PRK01203 prefoldin subunit alp 66.1 94 0.002 27.4 12.6 33 416-448 89-121 (130)
417 cd00187 TOP4c DNA Topoisomeras 66.0 1.9E+02 0.004 31.0 14.8 96 53-154 49-170 (445)
418 PF10805 DUF2730: Protein of u 65.9 47 0.001 28.0 8.4 40 235-274 50-91 (106)
419 PF05529 Bap31: B-cell recepto 65.8 38 0.00081 31.5 8.7 35 262-296 154-188 (192)
420 PRK10929 putative mechanosensi 65.8 3E+02 0.0064 33.0 29.2 8 87-94 41-48 (1109)
421 cd07647 F-BAR_PSTPIP The F-BAR 65.7 1.3E+02 0.0029 29.0 18.2 24 302-325 148-171 (239)
422 PF05531 NPV_P10: Nucleopolyhe 65.7 41 0.00089 26.7 7.3 49 285-333 13-61 (75)
423 PF09304 Cortex-I_coil: Cortex 65.6 85 0.0018 26.7 14.7 18 243-260 11-28 (107)
424 PF09486 HrpB7: Bacterial type 65.6 1.1E+02 0.0024 27.9 12.3 98 203-300 18-124 (158)
425 PRK10698 phage shock protein P 65.5 1.3E+02 0.0029 28.9 19.1 24 309-332 115-138 (222)
426 PF10212 TTKRSYEDQ: Predicted 65.3 2.1E+02 0.0045 31.1 14.8 34 267-300 418-451 (518)
427 PF11570 E2R135: Coiled-coil r 65.3 96 0.0021 27.2 12.5 121 236-361 3-124 (136)
428 TIGR02894 DNA_bind_RsfA transc 65.2 1E+02 0.0022 28.1 10.8 31 265-295 100-130 (161)
429 TIGR00414 serS seryl-tRNA synt 64.9 45 0.00097 35.3 9.9 26 276-301 37-62 (418)
430 TIGR02449 conserved hypothetic 64.4 64 0.0014 24.9 9.4 55 276-340 7-61 (65)
431 PRK15136 multidrug efflux syst 64.4 1.8E+02 0.004 30.2 16.7 64 274-337 125-188 (390)
432 PF03148 Tektin: Tektin family 64.2 1.9E+02 0.0041 30.2 20.7 42 307-348 324-365 (384)
433 cd00632 Prefoldin_beta Prefold 64.1 85 0.0018 26.2 11.6 40 399-438 62-101 (105)
434 COG4467 Regulator of replicati 64.0 45 0.00098 28.3 7.6 49 256-304 9-57 (114)
435 TIGR02894 DNA_bind_RsfA transc 63.8 1E+02 0.0022 28.1 10.5 37 262-298 111-147 (161)
436 PF02994 Transposase_22: L1 tr 63.6 24 0.00053 36.6 7.5 52 253-304 142-193 (370)
437 PF15294 Leu_zip: Leucine zipp 63.1 1.3E+02 0.0028 30.1 12.0 128 204-348 117-249 (278)
438 PRK12704 phosphodiesterase; Pr 62.9 2.3E+02 0.0051 30.9 16.2 121 237-357 64-184 (520)
439 KOG1760 Molecular chaperone Pr 62.9 1E+02 0.0023 26.8 9.9 25 204-228 27-51 (131)
440 PF05483 SCP-1: Synaptonemal c 62.7 2.6E+02 0.0057 31.4 33.7 24 122-146 19-42 (786)
441 PRK13729 conjugal transfer pil 62.7 31 0.00067 36.9 8.0 13 287-299 108-120 (475)
442 PF05377 FlaC_arch: Flagella a 62.6 46 0.001 24.8 6.7 41 411-451 4-44 (55)
443 PF07058 Myosin_HC-like: Myosi 62.6 72 0.0016 32.1 10.0 79 256-334 1-86 (351)
444 PF12329 TMF_DNA_bd: TATA elem 62.5 75 0.0016 25.0 9.0 40 239-278 17-56 (74)
445 PRK03947 prefoldin subunit alp 62.4 1.1E+02 0.0024 26.8 13.7 42 255-296 94-135 (140)
446 PF05478 Prominin: Prominin; 62.1 3E+02 0.0064 31.8 24.4 50 308-357 240-289 (806)
447 KOG0982 Centrosomal protein Nu 62.0 2.2E+02 0.0047 30.2 27.1 56 209-264 217-273 (502)
448 KOG2991 Splicing regulator [RN 61.7 1.7E+02 0.0037 28.8 20.9 85 247-334 107-197 (330)
449 PF10805 DUF2730: Protein of u 61.6 60 0.0013 27.4 8.3 51 405-455 47-99 (106)
450 KOG2264 Exostosin EXT1L [Signa 61.6 52 0.0011 35.8 9.4 11 142-153 23-33 (907)
451 COG3096 MukB Uncharacterized p 61.6 2.9E+02 0.0063 31.5 25.6 221 203-452 860-1104(1480)
452 PF14735 HAUS4: HAUS augmin-li 61.6 1.6E+02 0.0036 28.6 13.4 64 350-426 141-204 (238)
453 PRK10698 phage shock protein P 61.5 1.6E+02 0.0034 28.3 20.9 52 307-365 99-150 (222)
454 PF04799 Fzo_mitofusin: fzo-li 61.4 67 0.0015 29.7 9.0 58 393-454 106-163 (171)
455 COG5293 Predicted ATPase [Gene 61.4 2.3E+02 0.005 30.3 28.3 102 231-333 298-405 (591)
456 COG0216 PrfA Protein chain rel 61.2 1.7E+02 0.0036 30.1 12.4 28 430-457 78-105 (363)
457 PF12761 End3: Actin cytoskele 61.2 1.2E+02 0.0025 28.8 10.7 22 242-263 97-118 (195)
458 KOG2398 Predicted proline-seri 61.1 2.7E+02 0.0059 31.0 15.9 40 328-367 186-225 (611)
459 PRK10803 tol-pal system protei 61.0 49 0.0011 32.6 8.8 25 280-304 58-82 (263)
460 TIGR03545 conserved hypothetic 60.9 1.7E+02 0.0037 32.2 13.7 12 349-360 292-303 (555)
461 PF12795 MscS_porin: Mechanose 60.5 1.6E+02 0.0036 28.3 24.2 86 269-354 38-125 (240)
462 PF05700 BCAS2: Breast carcino 60.3 1.4E+02 0.0031 28.5 11.7 36 260-295 134-169 (221)
463 TIGR02338 gimC_beta prefoldin, 60.0 1.1E+02 0.0023 25.9 12.2 30 312-341 72-101 (110)
464 KOG4593 Mitotic checkpoint pro 59.6 3E+02 0.0064 31.0 28.9 57 284-343 159-215 (716)
465 COG3074 Uncharacterized protei 59.2 85 0.0018 24.6 10.3 26 202-227 6-31 (79)
466 PRK15396 murein lipoprotein; P 59.0 71 0.0015 25.6 7.7 51 308-358 26-76 (78)
467 PF06632 XRCC4: DNA double-str 58.9 1.1E+02 0.0024 31.4 11.2 41 235-275 166-207 (342)
468 PF10779 XhlA: Haemolysin XhlA 58.8 84 0.0018 24.4 8.1 33 246-278 11-43 (71)
469 PF15456 Uds1: Up-regulated Du 58.7 1.2E+02 0.0026 26.4 9.9 93 304-451 19-111 (124)
470 cd00890 Prefoldin Prefoldin is 58.7 1.1E+02 0.0025 25.9 12.9 28 312-339 4-31 (129)
471 TIGR02132 phaR_Bmeg polyhydrox 58.4 92 0.002 28.9 9.3 106 194-299 55-166 (189)
472 PF07028 DUF1319: Protein of u 58.4 1.3E+02 0.0028 26.4 11.7 28 297-324 82-109 (126)
473 PF05384 DegS: Sensor protein 58.2 1.5E+02 0.0032 27.1 19.9 104 238-344 31-135 (159)
474 PF06156 DUF972: Protein of un 58.1 79 0.0017 26.9 8.4 43 406-448 14-56 (107)
475 PF13805 Pil1: Eisosome compon 58.0 1.1E+02 0.0025 30.3 10.6 18 236-253 140-157 (271)
476 PF12999 PRKCSH-like: Glucosid 57.5 47 0.001 30.8 7.4 37 246-282 137-173 (176)
477 COG4913 Uncharacterized protei 57.1 3.4E+02 0.0074 30.9 20.2 28 286-313 670-697 (1104)
478 PF05384 DegS: Sensor protein 57.1 1.6E+02 0.0034 27.0 18.8 42 301-342 71-112 (159)
479 TIGR02977 phageshock_pspA phag 56.8 1.8E+02 0.0039 27.7 18.2 29 308-336 100-128 (219)
480 PF06120 Phage_HK97_TLTM: Tail 56.6 2.3E+02 0.0049 28.7 22.2 10 392-401 230-239 (301)
481 PF06810 Phage_GP20: Phage min 56.5 64 0.0014 29.2 8.1 49 282-330 19-67 (155)
482 TIGR01010 BexC_CtrB_KpsE polys 56.4 2.4E+02 0.0052 28.9 20.2 52 253-308 156-207 (362)
483 TIGR00293 prefoldin, archaeal 56.3 51 0.0011 28.3 7.2 24 204-227 10-33 (126)
484 PF03997 VPS28: VPS28 protein; 56.3 19 0.00041 33.8 4.7 103 76-188 75-185 (188)
485 PF04859 DUF641: Plant protein 56.3 1.4E+02 0.0031 26.3 10.0 32 261-292 86-117 (131)
486 COG2960 Uncharacterized protei 56.2 81 0.0018 26.5 7.8 33 420-452 58-90 (103)
487 COG5493 Uncharacterized conser 56.0 1.8E+02 0.004 27.5 11.0 37 280-316 50-86 (231)
488 PF12777 MT: Microtubule-bindi 56.0 72 0.0016 32.7 9.4 96 246-351 219-314 (344)
489 PF04799 Fzo_mitofusin: fzo-li 56.0 58 0.0013 30.1 7.6 54 199-255 112-165 (171)
490 COG0172 SerS Seryl-tRNA synthe 55.9 1E+02 0.0022 32.8 10.4 97 243-340 4-101 (429)
491 TIGR00618 sbcc exonuclease Sbc 55.8 4.2E+02 0.009 31.5 29.1 245 209-454 330-582 (1042)
492 TIGR02132 phaR_Bmeg polyhydrox 55.7 1.7E+02 0.0038 27.1 19.4 161 173-350 14-179 (189)
493 KOG0240 Kinesin (SMY1 subfamil 55.6 3.2E+02 0.0069 30.1 15.9 194 236-447 347-543 (607)
494 PRK03598 putative efflux pump 55.5 2.3E+02 0.005 28.4 17.8 116 245-360 78-203 (331)
495 COG5283 Phage-related tail pro 55.5 4.4E+02 0.0095 31.6 19.7 158 209-366 24-186 (1213)
496 PF05278 PEARLI-4: Arabidopsis 55.4 1.4E+02 0.0031 29.6 10.7 82 219-300 171-252 (269)
497 PRK13729 conjugal transfer pil 55.3 52 0.0011 35.2 8.2 64 388-451 52-120 (475)
498 PF10779 XhlA: Haemolysin XhlA 54.8 98 0.0021 24.0 7.9 49 403-451 2-50 (71)
499 PF15450 DUF4631: Domain of un 54.8 3.1E+02 0.0068 29.7 27.6 244 184-453 185-437 (531)
500 PF10267 Tmemb_cc2: Predicted 54.7 2.8E+02 0.0061 29.2 16.5 107 233-365 211-317 (395)
No 1
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.3e-87 Score=681.75 Aligned_cols=445 Identities=31% Similarity=0.492 Sum_probs=395.4
Q ss_pred CCCC--CCCCCCCCC--CCC----CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHH
Q 012695 1 MRGK--VRRRPTESA--LQP----TPDLYG-GNRFGGSRDSDASFASSRPSSIGMG-RASAADLYTDRSHQSSAIRAINA 70 (458)
Q Consensus 1 ~~~~--~~~~~~~~~--~~~----~~~~~~-~~~~~~~r~s~~s~~~sr~s~~g~~-~~~DpRpl~DK~~q~~~~~~I~~ 70 (458)
||++ ++|++..|. .+| ++|.++ ..+.|++|+|++| ||-|++..- +..||||++||+||++|++.|++
T Consensus 5 ~r~~~~~~r~t~~p~~~i~P~~~v~~pT~~~~valf~~r~S~~s---~~~~~~~~~~s~~dpRpl~dk~~~s~c~~~I~~ 81 (581)
T KOG0995|consen 5 MRRKTAGKRGTGTPSGGINPTKRVTTPTSGTSVALFDRRPSLHS---SRLSSFNTSNSIRDPRPLSDKRYRSQCIRQIYN 81 (581)
T ss_pred hhccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCccccc---ccccccCchhccCCCCCcccHHHHHHHHHHHHH
Confidence 6733 566666655 233 444444 8899999999997 453333221 11279999999999999999999
Q ss_pred HhccCCCC--CCCCCCCCCCHHHHHHHHHHHHHccCCCC--CcchHhHHHHHHHhcCCCCccccccccCCCCCCChHHHH
Q 012695 71 HLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYL 146 (458)
Q Consensus 71 fL~~~~f~--~s~k~l~~PT~KdF~~If~fL~~~iD~~~--~~k~EeEv~~~lK~L~YP~~IsKS~L~avG~pHsWP~~L 146 (458)
||.+|||+ +|+|.++.||+|||+.||+|||.+|||++ +.+|||||+.|||.|||||.+++|++.|+||||+|||+|
T Consensus 82 fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~Ldp~y~f~~r~EeEV~~ilK~L~YPf~~siSs~~a~gspH~WP~iL 161 (581)
T KOG0995|consen 82 FLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFLDPDYEFPERIEEEVVQILKNLKYPFLLSISSLQAAGSPHNWPHIL 161 (581)
T ss_pred HHHHcCCCCChhhhhcCCCccccHHHHHHHHHhccCCCcccchhHHHHHHHHHHhCCCCcccchhhhccCCCCCccHHHH
Confidence 99999997 89999999999999999999999999665 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcCCcc-------cccchHHHHHHHHHHHHHHhCCCCChhhhhHHHHHHHHHHHHhHHHHHHHH
Q 012695 147 ALIHWLVQIASYNYHLTTNSKA-------FVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEEL 219 (458)
Q Consensus 147 g~L~WLv~l~~~~~~~~~~~~~-------~~~~~~~~~y~~~~Y~~fl~g~d~~~e~l~~e~~~kl~~~~~~~~e~~~~L 219 (458)
|||||||+|+++..++..++.. -..+..||+|+++||.+||.|+|+ +.+++++|..+|.+.......++..|
T Consensus 162 ~mlhWlvdlI~~~t~~v~~~~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~-~~~~~~Elk~~l~~~~~~i~~~ie~l 240 (581)
T KOG0995|consen 162 GMLHWLVDLIRINTALVEDSPLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDN-SSELEDELKHRLEKYFTSIANEIEDL 240 (581)
T ss_pred HHHHHHHHHHHHhHHHhhccchhccchHHHHHHHHHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876521 112248999999999999999998 56899999989998887777777777
Q ss_pred HHHHHHHHh----ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 220 KKKVSEMEG----AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 220 ~~e~~eLe~----l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
++...+|++ .+..|++++.|+++++.|++|+.||++|+.++.+++++|+++++.++.|++++++|++.++.++.+|
T Consensus 241 ~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 241 KKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666554 6678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCC-Ccce--
Q 012695 296 KKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLA-TEIQ-- 372 (458)
Q Consensus 296 ~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~-~d~~-- 372 (458)
+.+|+.|+||++||++||+|+++|++.++.+..+++.+.+.+|+++..+...+++++.++.+||.++++|+++ ..+.
T Consensus 321 k~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 321 KKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN 400 (581)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 3333
Q ss_pred EecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 373 YSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 373 ~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+.+|+.+..+ +|+||+..|+|.|..+.++|+..+++++.+++.||+.+++++..|++++..+..++.++..+++.+.
T Consensus 401 ~~~~pe~~~~---~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~ 477 (581)
T KOG0995|consen 401 LERNPERAAT---NGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE 477 (581)
T ss_pred CCcCCccCcc---ccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466665555 7899999999999999999999999999999999999999999999999999999999999888765
No 2
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.9e-72 Score=556.23 Aligned_cols=391 Identities=20% Similarity=0.338 Sum_probs=348.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccCCCC--CCCCCCCCCCHHHHHHHHHHHHHccCCCC--CcchHhHHHHHHHhcCCCC
Q 012695 51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPF 126 (458)
Q Consensus 51 DpRpl~DK~~q~~~~~~I~~fL~~~~f~--~s~k~l~~PT~KdF~~If~fL~~~iD~~~--~~k~EeEv~~~lK~L~YP~ 126 (458)
||||||||+||++|+..|++||.++||+ +++|.++.||+|+|+.||+|||.++||.| +++||+||+.+||.|+|||
T Consensus 96 DpRplrdk~yqq~c~~~I~~yL~engfd~pis~k~l~~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV~~~lKnL~YPf 175 (622)
T COG5185 96 DPRPLRDKNYQQACQEEIYDYLKENGFDIPISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIENEVYQILKNLRYPF 175 (622)
T ss_pred CCcccccchHHHHHHHHHHHHHHHcCCCcchhHHHhcCCccccHHHHHHHHHhccCCCCCcchhhHHHHHHHHHhcCCch
Confidence 9999999999999999999999999994 78899999999999999999999999665 9999999999999999999
Q ss_pred --ccccccccCCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCc--------ccccchHHHHHHHHHHHHHHhCCCCChhh
Q 012695 127 --KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSK--------AFVENNSMYMYASDSYLNYIEGKDGDVDN 196 (458)
Q Consensus 127 --~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~--------~~~~~~~~~~y~~~~Y~~fl~g~d~~~e~ 196 (458)
.||||+|+|+ |||+||.+||||||||.|+...+.+...-. +..++..||+|++++|+.||.|+|++. +
T Consensus 176 l~sI~kSqlsAI-~ph~Wp~iLgMlhW~V~li~~~~~~~~~~~tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~-~ 253 (622)
T COG5185 176 LESINKSQLSAI-GPHNWPKILGMLHWMVRLIIKLDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYE-P 253 (622)
T ss_pred hhhhhHhHhhcc-CCcchHHHHHHHHHHHHHHHHHHHHHhhhchHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccC-c
Confidence 9999999999 789999999999999999986665442211 123567899999999999999998764 4
Q ss_pred hhHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 197 IDKGFIEKLE-------KEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK 269 (458)
Q Consensus 197 l~~e~~~kl~-------~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~ 269 (458)
.+.+|...+. .+++++..+...|.+.+.+-+++- ..++.|+++..+|++|..||++|+..|++|.++|..
T Consensus 254 ~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s---~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g 330 (622)
T COG5185 254 SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS---QKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG 330 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch
Confidence 4555543333 344555555555555555544432 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695 270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK 349 (458)
Q Consensus 270 ~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~ 349 (458)
++..++.|++.++++++.++..+.+|+.+|.+|+||++|++.||.|+++|.+.++.+.-+.+.|.+.+.+.++.+...++
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~ 410 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFK 410 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC--------CCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 350 ELEALSMECNQAMKRLKL--------ATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQ 421 (458)
Q Consensus 350 ~lE~~v~~yN~~~~~l~l--------~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~ 421 (458)
++|+.+.+||.++++|++ ++|+.+.+|+.+..| .|.+++++|++.+.+|+..|..++...+...++|++
T Consensus 411 slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~---~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee 487 (622)
T COG5185 411 SLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFP---KGSGINESIKKSILELNDEIQERIKTEENKSITLEE 487 (622)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCc---cccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHH
Confidence 999999999999999998 568999999988777 778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 422 QSSEMAAKIEGKRKRIDALQFHINEVSA 449 (458)
Q Consensus 422 ~l~~~~~~i~~k~~e~~~Le~~~~~l~~ 449 (458)
.++.++..|.++..+++-++.++-....
T Consensus 488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s 515 (622)
T COG5185 488 DIKNLKHDINELTQILEKLELELSEANS 515 (622)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765443
No 3
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=100.00 E-value=3.5e-45 Score=331.26 Aligned_cols=141 Identities=40% Similarity=0.643 Sum_probs=96.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccCCC---CCCCCCCCCCCHHHHHHHHHHH
Q 012695 23 GNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSF---HIAFPLKQVPSVKDITDVIKFL 99 (458)
Q Consensus 23 ~~~~~~~r~s~~s~~~sr~s~~g~~~~~DpRpl~DK~~q~~~~~~I~~fL~~~~f---~~s~k~l~~PT~KdF~~If~fL 99 (458)
+++.||+|+|.+|+.++++++.+ .||||++||+||++|+++|++||.++|| +++.|.|++||+|||+.||+||
T Consensus 4 rss~~~~R~S~~~~~~~~~~~~~----~d~Rpl~Dk~~q~~~~~~I~~fL~~~~~~~~~is~k~l~~Pt~kdf~~I~~fL 79 (157)
T PF03801_consen 4 RSSVFGSRSSSASSSSSQPSSPQ----KDPRPLSDKSYQQECIRKIYEFLSEHGFESHPISPKTLKSPTQKDFVEIFNFL 79 (157)
T ss_dssp ---------------------------S--S-TT-HHHHHHHHHHHHHHHHHTT--SS---TTTTSS--HHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHcCCCCccccccccCCCCHHHHHHHHHHH
Confidence 45677888888876555555544 3799999999999999999999999999 5889999999999999999999
Q ss_pred HHccCCC--CCcchHhHHHHHHHhcCCCC-ccccccccCCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCc
Q 012695 100 ISQLDYP--STTKFEEDLFVVLKSLSCPF-KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSK 167 (458)
Q Consensus 100 ~~~iD~~--~~~k~EeEv~~~lK~L~YP~-~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~ 167 (458)
|++|||. |++|+||||+.+||.||||| +||||+|.|||+||+||++||||+|||+|+.+.+.+.+...
T Consensus 80 ~~~idp~~~~~~k~eeev~~~lK~L~YP~~~isKS~L~a~gs~hsWP~lL~~L~WLv~l~~~~~~~~~~~~ 150 (157)
T PF03801_consen 80 FRQIDPNFKFGKKFEEEVPFLLKALGYPFATISKSSLQAPGSPHSWPHLLGALHWLVELIKYEEELDSNSE 150 (157)
T ss_dssp HHTTSTT---SSTHHHHHHHHHHHTT-SS----HHHHHSTTSTTTHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHhCCCCCcCcCHHHHHHHHHHHhCCCccccCHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 9999955 48899999999999999999 99999999999999999999999999999999998876654
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=98.13 E-value=0.0024 Score=73.36 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHH
Q 012695 87 PSVKDITDVIKFLIS 101 (458)
Q Consensus 87 PT~KdF~~If~fL~~ 101 (458)
.+.++...||.-|+.
T Consensus 146 ~~p~~R~~ii~~l~~ 160 (880)
T PRK02224 146 ATPSDRQDMIDDLLQ 160 (880)
T ss_pred CCHHHHHHHHHHHhC
Confidence 344555555655554
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.13 E-value=0.003 Score=74.23 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 411 ~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
....++..++..++.+...+.+.+.++..++.++..+..++..|
T Consensus 893 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 936 (1164)
T TIGR02169 893 ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566666666666666666666666666655555543
No 6
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.11 E-value=0.0076 Score=68.33 Aligned_cols=102 Identities=12% Similarity=0.236 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
+.....+.+.+.++..++++++.....++.+.....+.+++|+.- .++++.+..|++.+.++++.+..+..+++...
T Consensus 284 ~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~---~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~ 360 (1074)
T KOG0250|consen 284 NNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGEL---KDEVDAQDEEIEEARKDLDDLRREVNDLKEEI 360 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555554444444444444444444332 34556666666666777776666666666666
Q ss_pred hHHHhHH---hhHHHHHHHHHHHHHHHH
Q 012695 338 WDLDSKL---GRKFKELEALSMECNQAM 362 (458)
Q Consensus 338 ~~~e~~~---~~~~~~lE~~v~~yN~~~ 362 (458)
.+.+..+ ...++.++..|..|+.-.
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544 335566777777776654
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.10 E-value=0.0046 Score=72.70 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=17.2
Q ss_pred HHHHHHHHHHH-HccCCCC--CcchHhHHHHHHHhcC
Q 012695 90 KDITDVIKFLI-SQLDYPS--TTKFEEDLFVVLKSLS 123 (458)
Q Consensus 90 KdF~~If~fL~-~~iD~~~--~~k~EeEv~~~lK~L~ 123 (458)
++|..-+.-.. ..+++-+ ....-..++.+||.-+
T Consensus 535 ~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~ 571 (1164)
T TIGR02169 535 ERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRK 571 (1164)
T ss_pred HHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcC
Confidence 45544433333 3555543 3334456777777555
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.05 E-value=0.0067 Score=71.21 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
.++..++..+..+...+...+.++..++.+++.+..++.+
T Consensus 901 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555556655555554
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.99 E-value=0.011 Score=69.55 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINE 446 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~ 446 (458)
.+...++..+..+...+...+.++..++.++..
T Consensus 908 ~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555554444444
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.99 E-value=0.018 Score=58.05 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
.+|+..+..+++.+...+...+...++|+.++..++.++.
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 3455555555555555555555555555555555555443
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.97 E-value=0.0058 Score=72.31 Aligned_cols=69 Identities=9% Similarity=0.025 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHccCCCC--CcchHhHHHHHHHh--cCCCCccccccccCC--CCCCChHHHHHHHHHHHHHHhhhhh
Q 012695 90 KDITDVIKFLISQLDYPS--TTKFEEDLFVVLKS--LSCPFKINKSTLRSP--NSPHNWPAYLALIHWLVQIASYNYH 161 (458)
Q Consensus 90 KdF~~If~fL~~~iD~~~--~~k~EeEv~~~lK~--L~YP~~IsKS~L~av--G~pHsWP~~Lg~L~WLv~l~~~~~~ 161 (458)
+--..|=-.|-..+++.+ ....-..++.+||. +|..=.|--..+.+. ..+.+ .=|.+.-+++++.+.+.
T Consensus 530 ~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~---~~g~~~~a~dli~~d~~ 604 (1163)
T COG1196 530 KYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA---APGFLGLASDLIDFDPK 604 (1163)
T ss_pred HHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcccccccccc---ccchhHHHHHHhcCCHH
Confidence 333334444444777554 34466778999985 555532222222211 11111 22445556677776653
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.95 E-value=0.0055 Score=72.47 Aligned_cols=137 Identities=18% Similarity=0.321 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCC-CCcc---eEecCCCCCCCc
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL-ATEI---QYSLNSNGSTPS 383 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l-~~d~---~~~ln~~~~~~~ 383 (458)
+++..+.++..+...+..++.....+...+.+++..+......++.+...+|.+..+... ...+ ...+.. +
T Consensus 864 ~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~- 938 (1163)
T COG1196 864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEE----E- 938 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----c-
Confidence 344555566666666666667777777777766666666666666666666654333321 1111 011110 1
Q ss_pred cccccchhhchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 384 EVMGVDYKSTLKPALESFADDVKRS---SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 384 ei~~~d~k~~ik~~L~~l~~~i~~~---~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
....+...+...+..+...+... -..+.++...+.+.++.+..+.++.......|+..+.++++..
T Consensus 939 --~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~ 1007 (1163)
T COG1196 939 --YEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007 (1163)
T ss_pred --cccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10111113444455554443321 1122345556666666666666666666666666666655543
No 13
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0074 Score=65.79 Aligned_cols=146 Identities=10% Similarity=0.151 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHH----------
Q 012695 288 ICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSME---------- 357 (458)
Q Consensus 288 l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~---------- 357 (458)
++-|+.+.+.-+...+--.++|-+.|.....|+..++.+..++.+|..++.+..+.+.....+++.+-..
T Consensus 411 lewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~q 490 (1118)
T KOG1029|consen 411 LEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQ 490 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHH
Confidence 3445555555555555556788888888889999999999999999999999888777766666554433
Q ss_pred -------HHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 358 -------CNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALES------FADDVKRSSVEKLEELISLQQQSS 424 (458)
Q Consensus 358 -------yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~------l~~~i~~~~~~~~~e~~~l~~~l~ 424 (458)
|+..+.+|-.. ..+++..++ ..=.. -..++...+..++.-+..+.++++
T Consensus 491 lqarikE~q~kl~~l~~E--------------kq~l~~qlk----q~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqld 552 (1118)
T KOG1029|consen 491 LQARIKELQEKLQKLAPE--------------KQELNHQLK----QKQSAHKETTQRKSELEAARRKKELIRQAIKDQLD 552 (1118)
T ss_pred HHHHHHHHHHHHHhhhhH--------------HHHHHHHHH----HhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222110 001111111 10000 011222233333344556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 425 EMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 425 ~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
++.+.++.|.++++.+..++.+|.+.+
T Consensus 553 elskE~esk~~eidi~n~qlkelk~~~ 579 (1118)
T KOG1029|consen 553 ELSKETESKLNEIDIFNNQLKELKEDV 579 (1118)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777777777777777777777776654
No 14
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.84 E-value=0.039 Score=56.18 Aligned_cols=129 Identities=17% Similarity=0.271 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCHH----HH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI-CEENEEFKKRVKLQTINAR----DV 309 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l-~~E~~~L~~~v~~Q~~S~~----di 309 (458)
.++.|+...+.|..++..+..++..+..+.+.+..++..+++-... ++.. ..+.+.++..+..+....+ ++
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e----~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE----IESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666666666666666665555433221 1111 1334444555555544444 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh----HHHHHHHHHHHHHHHHHhcCC
Q 012695 310 ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGR----KFKELEALSMECNQAMKRLKL 367 (458)
Q Consensus 310 ~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~----~~~~lE~~v~~yN~~~~~l~l 367 (458)
..++.+++.+...|+.+..++.++...+.+.+..... ...++..+-..|+.+-...|.
T Consensus 233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 233 AELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGW 294 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCc
Confidence 7777788888888888888888887777776654432 335777788888877766665
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=0.02 Score=68.69 Aligned_cols=102 Identities=12% Similarity=0.103 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER------EIGKKVEEHKRICEENEEFKKRVKLQTINARDVE 310 (458)
Q Consensus 237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~------el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~ 310 (458)
..++++...++.++.....-+..++....+....+..++. .+.....++..++.++++|...+...+-+ ..++
T Consensus 747 p~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~-~s~~ 825 (1311)
T TIGR00606 747 PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD-RTVQ 825 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHH
Confidence 3444444444444444444444444444333333322211 11222445555555555555554444332 2445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 311 RMRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 311 rmn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
.+..++..++..++.+...++.+......
T Consensus 826 ele~ei~~~~~el~~l~~~~e~l~~e~e~ 854 (1311)
T TIGR00606 826 QVNQEKQEKQHELDTVVSKIELNRKLIQD 854 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666665555555544444433
No 16
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.12 Score=59.17 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHccCCCC--CcchHhHHHHHHHhcCCCC----ccc-----cccccCCCCCCChHHHHH
Q 012695 79 IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPF----KIN-----KSTLRSPNSPHNWPAYLA 147 (458)
Q Consensus 79 ~s~k~l~~PT~KdF~~If~fL~~~iD~~~--~~k~EeEv~~~lK~L~YP~----~Is-----KS~L~avG~pHsWP~~Lg 147 (458)
--+..|-....|==++|-. .+.+|||-+ +.---.+++.+||..+-|+ .+. +..+..+.+|-+-|-+..
T Consensus 620 GRLGDLg~Id~kYDvAIsT-ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfD 698 (1293)
T KOG0996|consen 620 GRLGDLGAIDEKYDVAIST-ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFD 698 (1293)
T ss_pred cccccccccchHHHHHHHH-hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhh
Confidence 3455555555665556666 788999877 3444578999999999998 233 455899999999997554
Q ss_pred HH
Q 012695 148 LI 149 (458)
Q Consensus 148 ~L 149 (458)
.+
T Consensus 699 Lv 700 (1293)
T KOG0996|consen 699 LV 700 (1293)
T ss_pred hh
Confidence 33
No 17
>PRK11637 AmiB activator; Provisional
Probab=97.79 E-value=0.074 Score=56.17 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el 278 (458)
.+..+...++..+...+.-+..++.++..++..|..+++++
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 18
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.78 E-value=0.01 Score=63.61 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+|+..+...++.+..++.+.......|+.+++.|+-|++
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD 334 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh
Confidence 455555555555555555555555555555555555544
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.76 E-value=0.0087 Score=58.17 Aligned_cols=190 Identities=21% Similarity=0.292 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E 315 (458)
...|..++..|+.++.+.+.-+.....+....++........+...+.........+..|..++..-....+++++...+
T Consensus 38 ~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E 117 (237)
T PF00261_consen 38 VASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEE 117 (237)
T ss_dssp HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555544444444444444444444444433333334444444444444445544444445555543322
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhHHHhHHh---hHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCcccccc
Q 012695 316 ----LQAVERDIADAENARNEWESKTWDLDSKLG---RKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGV 388 (458)
Q Consensus 316 ----~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~---~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~ 388 (458)
...+...++.++.+.+.+..++.+++-.+. ..+..++.....|+.-..
T Consensus 118 ~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~------------------------- 172 (237)
T PF00261_consen 118 VERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERED------------------------- 172 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH-------------------------
Confidence 344555555555555555555555554442 233444444444433221
Q ss_pred chhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 389 DYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 389 d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
.|...|+. |..-.++...+..........|+..++.+...+..-+.....++..++..=..|
T Consensus 173 ~~e~~i~~-L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 173 EYEEKIRD-LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222222 333333444455555566777777777777777777777777777665544443
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.76 E-value=0.024 Score=68.70 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 396 PALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 396 ~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
..|.+...++..++..+.+++...............++..++++|+.+++..
T Consensus 1093 ~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1093 AQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555543
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.71 E-value=0.017 Score=69.39 Aligned_cols=50 Identities=12% Similarity=0.055 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695 317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366 (458)
Q Consensus 317 ~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~ 366 (458)
+.|+..++.......+....+.+++..+......++.+-..||.++.-.|
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~G 487 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG 487 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555556666666677777777777777777777777777777766555
No 22
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=97.70 E-value=0.0062 Score=59.78 Aligned_cols=39 Identities=23% Similarity=0.502 Sum_probs=33.3
Q ss_pred HhcCCCCccccccccCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 012695 120 KSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHL 162 (458)
Q Consensus 120 K~L~YP~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~ 162 (458)
|.||||=.||=..+.+| |||-+--+|+|||......-.+
T Consensus 1 R~LGypr~iSmenFrtP----NF~LVAeiL~WLv~rydP~~~i 39 (267)
T PF10234_consen 1 RALGYPRLISMENFRTP----NFELVAEILRWLVKRYDPDADI 39 (267)
T ss_pred CCCCCCCCCcHHHcCCC----ChHHHHHHHHHHHHHcCCCCCC
Confidence 57999999999999986 9999999999999987654433
No 23
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.66 E-value=0.16 Score=56.45 Aligned_cols=92 Identities=14% Similarity=0.248 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
..++.....+...|.+.+..-...-.++.++++||-.||++|..-+-|-.+++-|++|+.+|..+++-+..+++++..--
T Consensus 72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk 151 (717)
T PF09730_consen 72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLK 151 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555556667889999999999999999999999999999999999999999988888776654
Q ss_pred hHHHhHHhhHHH
Q 012695 338 WDLDSKLGRKFK 349 (458)
Q Consensus 338 ~~~e~~~~~~~~ 349 (458)
.-.|..+..+++
T Consensus 152 ~iae~qleEALe 163 (717)
T PF09730_consen 152 EIAEKQLEEALE 163 (717)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=97.65 E-value=0.088 Score=60.57 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 419 LQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 419 l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
+++.++...+.+++...+++.|+.++.++++.+..|
T Consensus 521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~ 556 (880)
T PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEK 556 (880)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555556666666666666666544
No 25
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=0.056 Score=64.88 Aligned_cols=8 Identities=13% Similarity=0.040 Sum_probs=3.6
Q ss_pred CChHHHHH
Q 012695 140 HNWPAYLA 147 (458)
Q Consensus 140 HsWP~~Lg 147 (458)
..++.+|.
T Consensus 635 ~~~~~~L~ 642 (1311)
T TIGR00606 635 QDEESDLE 642 (1311)
T ss_pred hhHHHHHH
Confidence 34444443
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=97.63 E-value=0.074 Score=61.11 Aligned_cols=9 Identities=22% Similarity=0.143 Sum_probs=3.5
Q ss_pred CCCCCCCCC
Q 012695 25 RFGGSRDSD 33 (458)
Q Consensus 25 ~~~~~r~s~ 33 (458)
...|...||
T Consensus 27 ~i~G~nG~G 35 (880)
T PRK03918 27 LIIGQNGSG 35 (880)
T ss_pred EEEcCCCCC
Confidence 344433333
No 27
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.61 E-value=0.029 Score=63.66 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=40.8
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 398 LESFADDVKR---SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 398 L~~l~~~i~~---~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
..+|+.+-.. ....+.+.+.+|+-........++++..+|+.|+.+++.+-.-+.
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4555555444 344455677788888889999999999999999999988765543
No 28
>PRK09039 hypothetical protein; Validated
Probab=97.60 E-value=0.1 Score=53.49 Aligned_cols=23 Identities=13% Similarity=0.449 Sum_probs=18.3
Q ss_pred CCChHHHHHHHHHHHHHHhhhhh
Q 012695 139 PHNWPAYLALIHWLVQIASYNYH 161 (458)
Q Consensus 139 pHsWP~~Lg~L~WLv~l~~~~~~ 161 (458)
.+-||.|+.+|+=|.-++.+.-.
T Consensus 13 ~~~wpg~vd~~~~ll~~~~f~l~ 35 (343)
T PRK09039 13 VDYWPGFVDALSTLLLVIMFLLT 35 (343)
T ss_pred CCCCchHHHHHHHHHHHHHHHHH
Confidence 36899999999988887766543
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.60 E-value=0.082 Score=57.49 Aligned_cols=123 Identities=18% Similarity=0.244 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hcC
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL-----------QTI 304 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~-----------Q~~ 304 (458)
++.++++...+......++.-++.++..+..+...+....+.+...+.++..++.+...++..+.. +.+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~ 294 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence 445555555555555555555555555554444444444444444555555555555555544442 222
Q ss_pred C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHH
Q 012695 305 N--ARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECN 359 (458)
Q Consensus 305 S--~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN 359 (458)
+ +..+..+...+..++..++.+...+.++++...+..- +...+.+++..+...+
T Consensus 295 ~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~-~~~~i~el~~~i~~~~ 350 (562)
T PHA02562 295 SEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNE-QSKKLLELKNKISTNK 350 (562)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 1 4555566666666666666666666555444332111 3334444444444333
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.60 E-value=0.08 Score=57.58 Aligned_cols=7 Identities=14% Similarity=0.420 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 012695 150 HWLVQIA 156 (458)
Q Consensus 150 ~WLv~l~ 156 (458)
.|+.+++
T Consensus 117 ~~i~~~~ 123 (562)
T PHA02562 117 KYFEQML 123 (562)
T ss_pred HHHHHHH
Confidence 4444433
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.59 E-value=0.16 Score=54.59 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 411 ~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
...+++.+|...+..+.+.+.+.+.+-..|+.++.+.
T Consensus 368 ~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke 404 (546)
T PF07888_consen 368 ADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKE 404 (546)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345677788888888888888888888888777653
No 32
>PRK11637 AmiB activator; Provisional
Probab=97.58 E-value=0.012 Score=62.09 Aligned_cols=6 Identities=0% Similarity=-0.047 Sum_probs=2.1
Q ss_pred HHHHHH
Q 012695 241 KEKCVL 246 (458)
Q Consensus 241 ~~~~~L 246 (458)
++...+
T Consensus 47 ~~l~~l 52 (428)
T PRK11637 47 DQLKSI 52 (428)
T ss_pred HHHHHH
Confidence 333333
No 33
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.12 Score=54.75 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 012695 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL 316 (458)
Q Consensus 237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~ 316 (458)
...+.+...|..-..+|......++...-.+...|.+.+-.-...-.++..+++|+-.||++|.+-.-|.-+++-+++|+
T Consensus 124 ~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkhei 203 (772)
T KOG0999|consen 124 TNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEI 203 (772)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHH
Confidence 33334444444444444444455555555566666666665566778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012695 317 QAVERDIADAENARNEWES 335 (458)
Q Consensus 317 ~~L~~~i~~l~~~~~~l~~ 335 (458)
.+|...++-+..+.++...
T Consensus 204 kRleEe~elln~q~ee~~~ 222 (772)
T KOG0999|consen 204 KRLEEETELLNSQLEEAIR 222 (772)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999877777765543
No 34
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.50 E-value=0.032 Score=67.75 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (458)
Q Consensus 234 ~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q 302 (458)
..+..+..+...+..++.+++.-|..++.++.++...++.........+....++..+.+.|+.+++.|
T Consensus 1076 ~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1076 SELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777888888888888888888888888888888888888888899999999999888
No 35
>PRK03918 chromosome segregation protein; Provisional
Probab=97.45 E-value=0.13 Score=59.05 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 012695 435 KRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 435 ~e~~~Le~~~~~l~~q~~~~ 454 (458)
.++..++.++..++..|..|
T Consensus 532 ~~~~~l~~~l~~l~~~l~~~ 551 (880)
T PRK03918 532 EKLIKLKGEIKSLKKELEKL 551 (880)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 33444444444445554443
No 36
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.12 Score=58.21 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHH
Q 012695 316 LQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK 363 (458)
Q Consensus 316 ~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~ 363 (458)
...|++.|+.-.+.+..........+-.+....++|..+.-.||.+..
T Consensus 309 ~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ 356 (1200)
T KOG0964|consen 309 IKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVD 356 (1200)
T ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 344555555444444444444455555556666677777777776653
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.42 E-value=0.29 Score=55.97 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQ 441 (458)
Q Consensus 409 ~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le 441 (458)
....+++.-.++..+..+..+|+....++.+|.
T Consensus 431 ~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 431 AKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555555555555554
No 38
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.41 E-value=0.064 Score=64.36 Aligned_cols=123 Identities=15% Similarity=0.249 Sum_probs=82.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 012695 205 LEKEKENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK-------------- 269 (458)
Q Consensus 205 l~~~~~~~~e~~~~L~~e~~eLe~-l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~-------------- 269 (458)
|....++..+.++.|.+.+..++. +..-...+..+..+......++.+++.++..|..+.+.+..
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~ 1313 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLK 1313 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 444555555566666666666554 22222367788889999999999999999999987655544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 270 -LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 270 -~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
.|..+++++..++..+..+..+..+++..+.. +++..+.++..+.+.+..+......+
T Consensus 1314 ~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~------qld~l~~e~~~lt~~~~ql~~~~~rL 1372 (1822)
T KOG4674|consen 1314 SEISRLKEELEEKENLIAELKKELNRLQEKIKK------QLDELNNEKANLTKELEQLEDLKTRL 1372 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777778888888888755544 35566666666666665544444333
No 39
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.38 E-value=0.0093 Score=60.71 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHH
Q 012695 245 VLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-LQTINARDVERMRRELQAVER 321 (458)
Q Consensus 245 ~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~-~Q~~S~~di~rmn~E~~~L~~ 321 (458)
.++..+.....-+.........++.++..++.++++...+...+..++.+++..++ .+++|..||.++..+.+.|++
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34444444444445555555666666666666666666666777777777776665 667788888877777776655
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.36 E-value=0.31 Score=52.46 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHHH
Q 012695 85 QVPSVKDITDVIKF 98 (458)
Q Consensus 85 ~~PT~KdF~~If~f 98 (458)
-.|+.+|.++||+-
T Consensus 32 ~~ps~~DWIGiFKV 45 (546)
T PF07888_consen 32 FHPSSKDWIGIFKV 45 (546)
T ss_pred CCCCCCCeeEEeec
Confidence 46888888888763
No 41
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.28 Score=56.40 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHh
Q 012695 142 WPAYLALIHWLVQIAS 157 (458)
Q Consensus 142 WP~~Lg~L~WLv~l~~ 157 (458)
=|+==|||-+|-|++-
T Consensus 246 ~e~d~GmLEYLEDIIG 261 (1293)
T KOG0996|consen 246 TENDEGMLEYLEDIIG 261 (1293)
T ss_pred CCCcchHHHHHHHHhc
Confidence 3556689999988874
No 42
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.34 E-value=0.37 Score=54.38 Aligned_cols=112 Identities=15% Similarity=0.226 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~ 314 (458)
+++.+......++.++.+++.-+...+.+...|...+..+..+++.+...+......+..++. +..++..
T Consensus 309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe----------E~~~~~~ 378 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQE----------EKSRLQG 378 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 566666667777777777777777888888888888888877777777777777766666643 4445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHH
Q 012695 315 ELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSM 356 (458)
Q Consensus 315 E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~ 356 (458)
|+..+...++..+..+..++.++.+++-.+..+-..+.....
T Consensus 379 Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~ 420 (775)
T PF10174_consen 379 EIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE 420 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555444444334444433
No 43
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.34 E-value=0.093 Score=50.96 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 406 ~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
..+.....+.+..|..++.......+.-...+..|+.+++.|+..|..
T Consensus 168 ~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 168 SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556666666666666666666666666666666665543
No 44
>PRK01156 chromosome segregation protein; Provisional
Probab=97.33 E-value=0.3 Score=56.36 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 429 KIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 429 ~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
.+++...++..++.++..+++.+.+|
T Consensus 523 ~~~~l~~~l~~~~~~l~~le~~~~~~ 548 (895)
T PRK01156 523 KIESARADLEDIKIKINELKDKHDKY 548 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566665566666655555
No 45
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.32 E-value=0.31 Score=54.54 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH
Q 012695 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKL 344 (458)
Q Consensus 265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~ 344 (458)
.++-.+...++.+|.....+.+++.+-.++++..++.- ++-|+-..-+.+--+..-+.+...++.+++++.++++.+
T Consensus 272 Skim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~---ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdl 348 (1243)
T KOG0971|consen 272 SKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADT---ADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDL 348 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444344443333321 222333333333344444455555555555555555544
Q ss_pred hhHHHHHHH
Q 012695 345 GRKFKELEA 353 (458)
Q Consensus 345 ~~~~~~lE~ 353 (458)
.=...+++.
T Consensus 349 EILKaEmee 357 (1243)
T KOG0971|consen 349 EILKAEMEE 357 (1243)
T ss_pred HHHHHHHHh
Confidence 444444443
No 46
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=97.28 E-value=0.11 Score=53.68 Aligned_cols=291 Identities=17% Similarity=0.255 Sum_probs=152.7
Q ss_pred HHhccCCCC-CC---CC-CCCCCCH--HHHHHHHHHHHHccCCCC--Ccch------HhHHHHHHHhcCCCCcccccccc
Q 012695 70 AHLSSHSFH-IA---FP-LKQVPSV--KDITDVIKFLISQLDYPS--TTKF------EEDLFVVLKSLSCPFKINKSTLR 134 (458)
Q Consensus 70 ~fL~~~~f~-~s---~k-~l~~PT~--KdF~~If~fL~~~iD~~~--~~k~------EeEv~~~lK~L~YP~~IsKS~L~ 134 (458)
+|+..++++ ++ .- .-.+|.- -.|..+..||++....+| ...+ -.-|...||.+|.|-.+.-|.|.
T Consensus 16 ~f~~~~~~kpl~r~yFa~~~~Np~eQF~~F~~L~~WL~~~~g~~f~~p~e~DDPn~~~~~Il~~lr~~g~~~df~p~kLk 95 (359)
T PF10498_consen 16 DFCKKRKMKPLSRHYFAVPSTNPGEQFYYFTSLCAWLISKAGRKFEQPQEYDDPNATISNILDELRKLGVPVDFPPSKLK 95 (359)
T ss_pred HHhhhcCCCCCCHHHhcCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHHHHccCCCCCCChHHhh
Confidence 466666542 32 00 1245653 789999999999887444 2233 34577888999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCc----------ccccc--hHHHHHHHHHHHHHHhCCCCChhh-hhHHH
Q 012695 135 SPNSPHNWPAYLALIHWLVQIASYNYHLTTNSK----------AFVEN--NSMYMYASDSYLNYIEGKDGDVDN-IDKGF 201 (458)
Q Consensus 135 avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~----------~~~~~--~~~~~y~~~~Y~~fl~g~d~~~e~-l~~e~ 201 (458)
+ |+. ++++.+|.=|++.+.-...+.=... ++.++ .+..+-+.+ -...++++.++ ++-.+
T Consensus 96 ~-G~G---e~vc~VLd~Lad~AL~~~~F~~~~p~~~~e~~e~~~v~ddd~e~~~~~~ee----e~~~~~~~~dd~~d~~~ 167 (359)
T PF10498_consen 96 Q-GSG---EHVCYVLDQLADEALKRKNFKWKRPIYPKEEDEEEDVEDDDAEIILDKVEE----EQEIEEDDDDDFIDLNF 167 (359)
T ss_pred C-CCC---HHHHHHHHHHHHHHHHhcCcCccCCCCCccccccccccccchhhhhhhccc----cccccccchHHHhhHHH
Confidence 8 432 6899999999998764432211000 00000 011110000 00000000000 00001
Q ss_pred HHHH------------HHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 202 IEKL------------EKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK 269 (458)
Q Consensus 202 ~~kl------------~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~ 269 (458)
..+- ...+++.. ...+=+.|++++- | .| +.....|-.--..-++.|..+......
T Consensus 168 ~~~~~~~~~~~~~~~~~~i~es~v-d~~eWklEvERV~-----P----qL---Kv~~~~d~kDWR~hleqm~~~~~~I~~ 234 (359)
T PF10498_consen 168 LDKKTKNGDTEEKQKPEEIIESKV-DPAEWKLEVERVL-----P----QL---KVTIRADAKDWRSHLEQMKQHKKSIES 234 (359)
T ss_pred HhhhhcccccccccchhhcccccC-CHHHHHHHHHHHh-----h----hh---eeeccCCcchHHHHHHHHHHHHHHHHH
Confidence 0000 00000000 0011111222211 1 01 112223333333444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695 270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK 349 (458)
Q Consensus 270 ~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~ 349 (458)
.+...+..|.....++...-+.+...++.|.+ +++.+-.+...++..+.+++.+..+....+.++-..+++--+
T Consensus 235 ~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~------qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 235 ALPETKSQLDKLQQDISKTLEKIESREKYINN------QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555555555555555555566666666665 466777888888888888888888888888887777777777
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHH
Q 012695 350 ELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKR 407 (458)
Q Consensus 350 ~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~ 407 (458)
++|.+-.+-..-..++ +..+| --.||.+|.+|+++|.+
T Consensus 309 eLe~vK~emeerg~~m------------tD~sP--------lv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 309 ELEQVKQEMEERGSSM------------TDGSP--------LVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHhcCCC------------CCCCH--------HHHHHHHHHHHHHHHHH
Confidence 7776655433321111 11123 23478899999999876
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.28 Score=55.50 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=13.7
Q ss_pred HHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695 330 RNEWESKTWDLDSKLGRKFKELEALSMEC 358 (458)
Q Consensus 330 ~~~l~~~~~~~e~~~~~~~~~lE~~v~~y 358 (458)
+..+...+.-.+..-+.....++.++..|
T Consensus 908 ~kkle~e~~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 908 RKKLEHEVTKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence 33333444444444444555555565555
No 48
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.26 E-value=0.27 Score=49.75 Aligned_cols=130 Identities=22% Similarity=0.319 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK----VEEHKRICEENEEFKKRVKLQTINARDVE 310 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~----~~el~~l~~E~~~L~~~v~~Q~~S~~di~ 310 (458)
.++.|+.....|..+++....++..+..+.+.+..++..+++-.... ..++..++.++.++...|..- ..+++
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~---~~~l~ 228 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIK---VKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 35566666666777777777777777777777776666655433322 235555555544444443332 33455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh----HHHHHHHHHHHHHHHHHhcCC
Q 012695 311 RMRRELQAVERDIADAENARNEWESKTWDLDSKLGR----KFKELEALSMECNQAMKRLKL 367 (458)
Q Consensus 311 rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~----~~~~lE~~v~~yN~~~~~l~l 367 (458)
..+.++..+...|+....++.++...+.+.+..+.. ...++..+...|+.+=...|+
T Consensus 229 e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~ 289 (312)
T smart00787 229 ELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGW 289 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 556666666666666666666666666666654422 234677777777766554444
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.21 E-value=0.42 Score=57.04 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+.+...++...+.....+...+.++..++.++.++..+|+
T Consensus 496 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 496 QAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445555555556666666666666667777776666664
No 50
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.20 E-value=0.31 Score=49.04 Aligned_cols=123 Identities=17% Similarity=0.266 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~ 314 (458)
+++........++.++.++..-++........++.++..+++++...... -++++..|+.++. ...++ +++. .
T Consensus 90 k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~---heeEi~~L~~~~~-~~~~~-e~~~--~ 162 (312)
T PF00038_consen 90 KYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN---HEEEIEELREQIQ-SSVTV-EVDQ--F 162 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTSTT----------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhccc-cccce-eecc--c
Confidence 34555566666777777777766776666777777777777777654332 3356667766665 22322 2222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-HHHhHHhhHHHHHHHHHHHHHHHHHh
Q 012695 315 ELQAVERDIADAENARNEWESKTW-DLDSKLGRKFKELEALSMECNQAMKR 364 (458)
Q Consensus 315 E~~~L~~~i~~l~~~~~~l~~~~~-~~e~~~~~~~~~lE~~v~~yN~~~~~ 364 (458)
-...|...+..+....+..-.+.+ +.+..+..++.++...+...+..+..
T Consensus 163 ~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~ 213 (312)
T PF00038_consen 163 RSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELES 213 (312)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccch
Confidence 223355555555555543333333 45556666777776666665555444
No 51
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.41 Score=54.31 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQ 456 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~~ 456 (458)
.++.+|+..+..+...-.+.+.+++.|..++.=+.++-..|-.
T Consensus 906 l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk 948 (1174)
T KOG0933|consen 906 LERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGK 948 (1174)
T ss_pred chHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcC
Confidence 3555666666677766777777777777777766666666544
No 52
>PRK01156 chromosome segregation protein; Provisional
Probab=97.15 E-value=0.53 Score=54.37 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012695 196 NIDKGFIEKLEKEKENVSEYVEELKKKVS 224 (458)
Q Consensus 196 ~l~~e~~~kl~~~~~~~~e~~~~L~~e~~ 224 (458)
+...++...+...+..+..++..|+.++.
T Consensus 465 e~~~e~i~~~~~~i~~l~~~i~~l~~~~~ 493 (895)
T PRK01156 465 EKSNHIINHYNEKKSRLEEKIREIEIEVK 493 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.14 E-value=0.63 Score=52.10 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
-+-+-..|++.....+..++.||..|++++.++-+=
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555667777778888888888888888887663
No 54
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.57 Score=50.26 Aligned_cols=41 Identities=17% Similarity=0.450 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 283 EEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 283 ~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
++.+.+..|+.+|+ .++++|+.+++.|.+.+=.++...++.
T Consensus 332 ~dve~mn~Er~~l~----------r~l~~i~~~~d~l~k~vw~~~l~~~~~ 372 (581)
T KOG0995|consen 332 EDVERMNLERNKLK----------RELNKIQSELDRLSKEVWELKLEIEDF 372 (581)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555556666663 467788888888888876555544433
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.09 E-value=0.52 Score=52.87 Aligned_cols=60 Identities=17% Similarity=0.352 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
....|+..+..|++-+.++.+....-....+++ .+|++.+..|+..+..-.+.|+.+++.
T Consensus 369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~-------~kelE~k~sE~~eL~r~kE~Lsr~~d~ 428 (1243)
T KOG0971|consen 369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKL-------QKELEKKNSELEELRRQKERLSRELDQ 428 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777766655444444444 344444444444444444444444333
No 56
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.00 E-value=0.3 Score=45.46 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=51.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVE 283 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~ 283 (458)
++...++...+....|..++..|... ..-+..+-..-+++...+..+......++.....+-.....++.|-.....
T Consensus 26 kL~~~ve~~ee~na~L~~e~~~L~~q---~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~ 102 (193)
T PF14662_consen 26 KLQRSVETAEEGNAQLAEEITDLRKQ---LKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555431 111333344455566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 012695 284 EHKRICEENEEFKK 297 (458)
Q Consensus 284 el~~l~~E~~~L~~ 297 (458)
++..++.++..|..
T Consensus 103 ~i~~Lqeen~kl~~ 116 (193)
T PF14662_consen 103 EIETLQEENGKLLA 116 (193)
T ss_pred HHHHHHHHHhHHHH
Confidence 66666666665543
No 57
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.97 E-value=0.46 Score=47.22 Aligned_cols=186 Identities=17% Similarity=0.284 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG---KKVEEHKRICEENEEFKKRVKLQTINARDVERM 312 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~---~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rm 312 (458)
...+..+...+...+..+.+-.+.+..+...+-+.+..+..... ...-.+..++.++.+|......-.+|++.=.++
T Consensus 57 ~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~l 136 (294)
T COG1340 57 AQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEEREL 136 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 44555555555555655555555555555555555555555444 233456777778888888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhh
Q 012695 313 RRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKS 392 (458)
Q Consensus 313 n~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~ 392 (458)
-..+..|.+.+.....+.+.- ..+.+ +-..++++-.....||.-+..|.- + -+
T Consensus 137 vq~I~~L~k~le~~~k~~e~~-~~~~e----l~aei~~lk~~~~e~~eki~~la~--e--------------------aq 189 (294)
T COG1340 137 VQKIKELRKELEDAKKALEEN-EKLKE----LKAEIDELKKKAREIHEKIQELAN--E--------------------AQ 189 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--H--------------------HH
Confidence 777777777776555443221 11111 112223333333344433332210 0 01
Q ss_pred chhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 393 TLKPALE---SFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVS 448 (458)
Q Consensus 393 ~ik~~L~---~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~ 448 (458)
.++.-+. +=++++...+...+++...+...++++.+.+....+++..++..+..+.
T Consensus 190 e~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 190 EYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222 2244445555555555556666666666555555555555555555443
No 58
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.96 E-value=1.6 Score=53.06 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKE 275 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~ 275 (458)
+++.++++...... -..|+......+..++..+..+.
T Consensus 895 ~~~~~~~~~~~~~~----a~~y~~~~~~~L~qLE~~l~~L~ 931 (1486)
T PRK04863 895 RVEEIREQLDEAEE----AKRFVQQHGNALAQLEPIVSVLQ 931 (1486)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 55555555544433 23677777777777777777665
No 59
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.90 E-value=0.06 Score=54.45 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHH
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-LQTINARDVERMRRELQAVER 321 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~-~Q~~S~~di~rmn~E~~~L~~ 321 (458)
.....+...++..+..+...+++...+...+..++.+++..++ .+++|..+|.++......|++
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555555555555555555553 356666666666555555543
No 60
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.85 E-value=1.1 Score=49.73 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 398 LESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQ 441 (458)
Q Consensus 398 L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le 441 (458)
|+.++++|.+.-.+..--...|.+++.+.++.+.++.+++++|+
T Consensus 261 lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 261 LQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 44445555444444444444444444444444444444444443
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.85 E-value=0.17 Score=48.97 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK 349 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~ 349 (458)
++.++..++..+++.+..+..++..++..+.+.+..+...+.
T Consensus 111 el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~ 152 (239)
T COG1579 111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVA 152 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555544444443333
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.84 E-value=1.1 Score=49.49 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012695 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFL 455 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~ 455 (458)
...+..++..++.+++.++.|..++..|+.+.+.+...|+-|.
T Consensus 201 ~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 201 QKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455578888888888999999999999998888888877664
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.81 E-value=1.4 Score=50.21 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKE 275 (458)
Q Consensus 237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~ 275 (458)
..++.++-.|+.++.-++.-.+..+.+++++...+..|+
T Consensus 297 ~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq 335 (1195)
T KOG4643|consen 297 ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQ 335 (1195)
T ss_pred CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 455555555555555444444444555555544444443
No 64
>PRK09039 hypothetical protein; Validated
Probab=96.79 E-value=0.25 Score=50.66 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKL 344 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~ 344 (458)
+|.++|.+++.|+..+..++..++..+++..+.+..+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i 174 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333
No 65
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.79 E-value=1.6 Score=53.10 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=13.9
Q ss_pred HHHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695 333 WESKTWDLDSKLGRKFKELEALSMECNQA 361 (458)
Q Consensus 333 l~~~~~~~e~~~~~~~~~lE~~v~~yN~~ 361 (458)
+++++.+++..+++....++..+.++..+
T Consensus 803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l 831 (1822)
T KOG4674|consen 803 CESRIKELERELQKLKKKLQEKSSDLREL 831 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555444433
No 66
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.77 E-value=0.63 Score=46.60 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHh-ccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 012695 212 VSEYVEELKKKVSEMEG-AMTGP-TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI-GKKVEEHKRI 288 (458)
Q Consensus 212 ~~e~~~~L~~e~~eLe~-l~~~~-~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el-~~~~~el~~l 288 (458)
+...+..|..+-.+||. +.... ..+..|.+++..|+.+....+.-+..+...+..++..++.-++-| ......+..+
T Consensus 111 L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l 190 (310)
T PF09755_consen 111 LSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKL 190 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555 22111 235577777777777777777777777777777777777666555 4667888899
Q ss_pred HHHHHHHHHHHHh---hcCCHHHH
Q 012695 289 CEENEEFKKRVKL---QTINARDV 309 (458)
Q Consensus 289 ~~E~~~L~~~v~~---Q~~S~~di 309 (458)
..++..|+..++. .+.|+.|+
T Consensus 191 ~~eKr~Lq~~l~~~~s~~~s~~d~ 214 (310)
T PF09755_consen 191 EAEKRRLQEKLEQPVSAPPSPRDT 214 (310)
T ss_pred HHHHHHHHHHHccccCCCCCcchH
Confidence 9999999999984 56677766
No 67
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.76 E-value=0.23 Score=44.53 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~ 314 (458)
+.+.++.+.+.|+.+..+++.=|..++.+...++..+..+...+......+..... ....++.+++
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--------------~~~~~E~l~r 80 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--------------RKSNAEQLNR 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHhHHHHHh
Confidence 34445555555555555555544555544444444444444443333222222221 1112225555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 012695 315 ELQAVERDIADAENARNEWESKTWDLDS 342 (458)
Q Consensus 315 E~~~L~~~i~~l~~~~~~l~~~~~~~e~ 342 (458)
.++.|...++.....+....+++.+.+.
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544444
No 68
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=1.5 Score=49.85 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 212 VSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICE 290 (458)
Q Consensus 212 ~~e~~~~L~~e~~eLe~-l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~ 290 (458)
...++..|++.+.++.. +..-...++.+.......+.|...|..-+..+.............+++.+..+..+++.+..
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 33444455555544443 11111234455555555555555555555555554444444555555555555555555554
Q ss_pred HHHHHHHHH-------Hh---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 291 ENEEFKKRV-------KL---QTINARDVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 291 E~~~L~~~v-------~~---Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
.+..++... .. -.+++++.+++ ..|...|..+..++.++...
T Consensus 756 ~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l----~kLn~eI~~l~~kl~~~~~e 807 (1200)
T KOG0964|consen 756 SLHKLESQSNYFESELGSELFSQLTPEELERL----SKLNKEINKLSVKLRALREE 807 (1200)
T ss_pred HHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHH----HHhhHHHHHHHHHHHHHHHH
Confidence 444443332 21 23566666543 34444455444444444433
No 69
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.73 E-value=0.55 Score=44.51 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNA---IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER 311 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~---yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~r 311 (458)
|+..++.+...|+.++..|.. -+..+..+...+++.+..++-+-+.....+..++.|+.+|...... ++.||..
T Consensus 63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~---~i~evqQ 139 (201)
T PF13851_consen 63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES---AIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 566777777777666655543 3344556666677777777777777777777777777777666442 3344433
Q ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHH
Q 012695 312 MR--------RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK 363 (458)
Q Consensus 312 mn--------~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~ 363 (458)
.- +....|...++..+.++.++-....=--.++......++.++...|....
T Consensus 140 k~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 140 KTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKNQTIK 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 22223333333333333332222111112333445567777777776654
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.73 E-value=2.1 Score=51.17 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695 280 KKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (458)
Q Consensus 280 ~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E 315 (458)
....+...+..+..+++..+..-.++++....+..-
T Consensus 439 ~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~ 474 (1201)
T PF12128_consen 439 ELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQA 474 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHH
Confidence 445556667777888888888888888887776643
No 71
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.70 E-value=1 Score=47.10 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ--------TINARDV 309 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q--------~~S~~di 309 (458)
.|+++.+.++.++...+.-+-.......+..+.|..+...+++.+.+-.+-..-..++-..+... .++++|+
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda 142 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDA 142 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhh
Confidence 34444444444444444444444444444444444444444443333311122222222222333 3455664
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695 310 E---RMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC 358 (458)
Q Consensus 310 ~---rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~y 358 (458)
. |+..=...+...+......+......+......++...+++..+...-
T Consensus 143 ~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq 194 (420)
T COG4942 143 QRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQ 194 (420)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 443333333333333333333333344444444555555555554443
No 72
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.66 E-value=0.44 Score=49.69 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=2.5
Q ss_pred HHhcCC
Q 012695 362 MKRLKL 367 (458)
Q Consensus 362 ~~~l~l 367 (458)
+++.|.
T Consensus 124 ~~r~g~ 129 (420)
T COG4942 124 LQRSGR 129 (420)
T ss_pred HHhccC
Confidence 344443
No 73
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.65 E-value=0.56 Score=47.39 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695 272 EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR--RELQAVERDIADAENARNEWESKTWDLDSKLGRKFK 349 (458)
Q Consensus 272 ~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn--~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~ 349 (458)
..+..|+......+.+++.+++-|+..+..+..-...+.--+ +|++.|=.+++.+..+...| +..+....+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL-------e~d~qs~lD 154 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL-------ERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 333344444444444445555555555444433222222111 66666666665555544444 444555777
Q ss_pred HHHHHHH---HHHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 350 ELEALSM---ECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEM 426 (458)
Q Consensus 350 ~lE~~v~---~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~ 426 (458)
+.+.++. .|-.-+.+|+ +++.+.||.... -|+ |+- +|..=+.-.++++.+.++|..-+...+...
T Consensus 155 EkeEl~~ERD~yk~K~~RLN--~ELn~~L~g~~~---riv--DID-----aLi~ENRyL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLN--HELNYILNGDEN---RIV--DID-----ALIMENRYLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhCCCCC---Ccc--cHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777763 3555555554 355556654321 222 322 244334445777888888888888888888
Q ss_pred HHHHHHHH
Q 012695 427 AAKIEGKR 434 (458)
Q Consensus 427 ~~~i~~k~ 434 (458)
+..++.++
T Consensus 223 K~~le~k~ 230 (319)
T PF09789_consen 223 KSALERKR 230 (319)
T ss_pred HHHHHhhc
Confidence 88777543
No 74
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.54 E-value=1.1 Score=48.91 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhcCCHH
Q 012695 243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVE---------------EHKRICEENEEFKKRVKLQTINAR 307 (458)
Q Consensus 243 ~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~---------------el~~l~~E~~~L~~~v~~Q~~S~~ 307 (458)
+..++..++.-++|....+.....++.+...++..+..... +-..+-+...+|+..+..-.-+++
T Consensus 525 I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aa 604 (961)
T KOG4673|consen 525 IEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAA 604 (961)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666555555555555444433322111 112233344555554444433333
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHH
Q 012695 308 DV-ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS 355 (458)
Q Consensus 308 di-~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v 355 (458)
-. +.|..|+..|++.+..++.+.+++.+.+-.--.=+-|.++.+...+
T Consensus 605 rrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl 653 (961)
T KOG4673|consen 605 RREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETL 653 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 33 3466889999999999999999988887665544555555554444
No 75
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.42 Score=53.06 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=10.9
Q ss_pred HHHHHhhHHHhHHhhHHHHHHHHH
Q 012695 332 EWESKTWDLDSKLGRKFKELEALS 355 (458)
Q Consensus 332 ~l~~~~~~~e~~~~~~~~~lE~~v 355 (458)
+...+..+++..+.+-.++++.++
T Consensus 803 e~~~~l~~~q~e~~~~keq~~t~~ 826 (970)
T KOG0946|consen 803 EESTRLQELQSELTQLKEQIQTLL 826 (970)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444
No 76
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.50 E-value=2 Score=48.08 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCC------CCc---ceEecCCCCCCCc-
Q 012695 314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL------ATE---IQYSLNSNGSTPS- 383 (458)
Q Consensus 314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l------~~d---~~~~ln~~~~~~~- 383 (458)
.|+..|++.+..+++.+..|...+.+.+..+.....++-..-+.-|.+..++.- +.+ ..-.....++..+
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~ 344 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDG 344 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccccccccccc
Confidence 567888888888888888888888777777766555555444444444333321 111 1111111111111
Q ss_pred ----------cccccchh------hchhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 384 ----------EVMGVDYK------STLKPALESFADDVKRSSVEK-------LEELISLQQQSSEMAAKIEGKRKRIDAL 440 (458)
Q Consensus 384 ----------ei~~~d~k------~~ik~~L~~l~~~i~~~~~~~-------~~e~~~l~~~l~~~~~~i~~k~~e~~~L 440 (458)
+++...|+ ..+++-|..|+..+....... ..+...|.+++........+.+..+..|
T Consensus 345 ~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~L 424 (717)
T PF09730_consen 345 DYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISEL 424 (717)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 22322232 234455555555444333322 3445566666666666555666678888
Q ss_pred HHHHHHHHHHH
Q 012695 441 QFHINEVSAKK 451 (458)
Q Consensus 441 e~~~~~l~~q~ 451 (458)
+..++.+..-.
T Consensus 425 E~ELr~l~~~A 435 (717)
T PF09730_consen 425 EKELRALSKLA 435 (717)
T ss_pred HHHHHHHHHHH
Confidence 88777665443
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.49 E-value=0.92 Score=44.04 Aligned_cols=96 Identities=20% Similarity=0.259 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIAD 325 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~ 325 (458)
...++.|.++-++........++..+..++.+.-..+.++..+.+.+++++..+ .-..+..+...++.|.+.+++.+..
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666667777777777777777777777777777777 5556677777788888887777777
Q ss_pred HHHHHHHHHHHhhHHHh
Q 012695 326 AENARNEWESKTWDLDS 342 (458)
Q Consensus 326 l~~~~~~l~~~~~~~e~ 342 (458)
++.++.++......++-
T Consensus 108 le~el~~l~~~~~~l~~ 124 (239)
T COG1579 108 LEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777666655544443
No 78
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.41 E-value=2.4 Score=47.98 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=10.7
Q ss_pred cchHhHHHHHHHhcC
Q 012695 109 TKFEEDLFVVLKSLS 123 (458)
Q Consensus 109 ~k~EeEv~~~lK~L~ 123 (458)
.+..++|-.+.-.|.
T Consensus 152 ~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHh
Confidence 556778888877774
No 79
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.38 E-value=1.7 Score=48.48 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 417 ISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 417 ~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
..++..++.+...+.....++..++.++.+++.++
T Consensus 431 ~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 431 GEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444443
No 80
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.38 E-value=2.6 Score=48.07 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
+.-+.+.+++++..+...+..++..-+.+..|++.|+..++.-.-+.+.-.+.+.+.+++-...+.+.....++..++.+
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555544455555555555666666666665555555554555555554444444444444444444444
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHh
Q 012695 340 LDSKLGRKFKELEALSMECNQAMKR 364 (458)
Q Consensus 340 ~e~~~~~~~~~lE~~v~~yN~~~~~ 364 (458)
+...+.+...++..+...+|.+..+
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ 517 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQ 517 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555444444443
No 81
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.67 Score=53.00 Aligned_cols=17 Identities=6% Similarity=0.007 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012695 348 FKELEALSMECNQAMKR 364 (458)
Q Consensus 348 ~~~lE~~v~~yN~~~~~ 364 (458)
+.-.+..+.+|+.+-..
T Consensus 358 lnl~d~~~~ey~rlk~e 374 (1141)
T KOG0018|consen 358 LNLKDDQVEEYERLKEE 374 (1141)
T ss_pred CCcchHHHHHHHHHHHH
Confidence 34445666666665433
No 82
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.33 E-value=2.2 Score=46.80 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSA 449 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~ 449 (458)
.+...+.+.+..+.....+-+..+..+...+..+..
T Consensus 397 ~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 397 KEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 83
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.31 E-value=1 Score=50.60 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 012695 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL 316 (458)
Q Consensus 241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~ 316 (458)
.+..+-+.|.+|-+..+++++.+...++++.+.+++-+.....+-..+-....+.++++..+.-+..|+++.|.++
T Consensus 396 aql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L 471 (980)
T KOG0980|consen 396 AQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNL 471 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344456788888888899999999999999999888888888888888888889999988888888888776554
No 84
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=2.5 Score=46.92 Aligned_cols=62 Identities=8% Similarity=0.175 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWE 334 (458)
Q Consensus 270 ~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~ 334 (458)
+...++-|+++....+.+|...+.+.+..|..|+- +|+.|+..++..-.+++.+..++.+++
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt---~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT---EIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHH---HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555554444444432 444444444443334444444443333
No 85
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.26 E-value=1.9 Score=45.29 Aligned_cols=42 Identities=19% Similarity=0.433 Sum_probs=26.7
Q ss_pred hHhHHHHHHHhcCCCCccccccccCCCCCCChHHHHHHHHHHHHHH
Q 012695 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIA 156 (458)
Q Consensus 111 ~EeEv~~~lK~L~YP~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~ 156 (458)
..++|+..|+.=||-.+|+---+.-|.+ -.|.+..-||.--+
T Consensus 109 c~~~I~~yL~engfd~pis~k~l~~PS~----k~F~~IFK~LY~~l 150 (622)
T COG5185 109 CQEEIYDYLKENGFDIPISIKFLKQPSQ----KGFIIIFKWLYLRL 150 (622)
T ss_pred HHHHHHHHHHHcCCCcchhHHHhcCCcc----ccHHHHHHHHHhcc
Confidence 4567777777777777666666665533 34666667766544
No 86
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=1.5 Score=50.26 Aligned_cols=132 Identities=15% Similarity=0.233 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 012695 242 EKCVLEEDLNKFNAII-----GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL 316 (458)
Q Consensus 242 ~~~~L~~D~~Kf~~yi-----~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~ 316 (458)
+...++.++.|+..-+ .+.+.+.+.|++.++.++.+++..+.+-+.+..++.++ ..++..+ ...++.+..|.
T Consensus 782 k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~--k~~~~~~~~e~ 858 (1141)
T KOG0018|consen 782 KRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKN--KSKFEKKEDEI 858 (1141)
T ss_pred HHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHH--HHHHHHHHHHH
Confidence 3344555555554332 34455667777777777777666555555555555555 3333322 45566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCcccc
Q 012695 317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVM 386 (458)
Q Consensus 317 ~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~ 386 (458)
....+.+..+...+..+.+.+.- .-..+|....+-++++.+-+|+ ++.+.| .+.+++++.
T Consensus 859 ~e~~k~~~~~~~~~tkl~~~i~~-------~es~ie~~~~er~~lL~~ckl~-~I~vPl--~~gs~~d~~ 918 (1141)
T KOG0018|consen 859 NEVKKILRRLVKELTKLDKEITS-------IESKIERKESERHNLLSKCKLE-DIEVPL--SSGSMDDIV 918 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-------hhhHHHHHHHHHHHHHHHhhhc-cccccc--cCCCccccc
Confidence 66666666555555555554444 4445555566666666666653 333333 333554443
No 87
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=2.6 Score=44.03 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=32.8
Q ss_pred HHHHHHHHHhccCCCCCCC--CCCCCCCHHHHHHHHHHHHHccC
Q 012695 63 SAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLD 104 (458)
Q Consensus 63 ~~~~~I~~fL~~~~f~~s~--k~l~~PT~KdF~~If~fL~~~iD 104 (458)
...-.|..|+..-||+..+ -+.-=|..-|....|-||...++
T Consensus 65 rla~siAq~ckdlgyrgD~gyqtfLypn~~dlR~ll~fLie~lp 108 (521)
T KOG1937|consen 65 RLANSIAQYCKDLGYRGDTGYQTFLYPNINDLRSLLIFLIEKLP 108 (521)
T ss_pred HHHHHHHHHHHHcCCCcccchhheecCCcccHHHHHHHHHhhCC
Confidence 4566788999999998544 34456888888889999999997
No 88
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.93 E-value=2.6 Score=43.82 Aligned_cols=102 Identities=12% Similarity=0.137 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 012695 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVE 320 (458)
Q Consensus 241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~ 320 (458)
.....+..-..-++.-+..++..+..++..+..++..+...+.++...+.+....+.-++..-+|..++.....+...++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~ 209 (423)
T TIGR01843 130 GQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQ 209 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 33444444444555555556666666666666666666666667777777777777777777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHh
Q 012695 321 RDIADAENARNEWESKTWDLDS 342 (458)
Q Consensus 321 ~~i~~l~~~~~~l~~~~~~~e~ 342 (458)
..+..++.++..+...+...+.
T Consensus 210 ~~l~~~~~~l~~~~~~l~~~~~ 231 (423)
T TIGR01843 210 GELGRLEAELEVLKRQIDELQL 231 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666655554443
No 89
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.93 E-value=1.6 Score=49.07 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 259 ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 259 ~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
.+.+--+++...|..+...-.....++..++.+++.|+..+
T Consensus 436 ~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 436 SSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL 476 (697)
T ss_pred hhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333433333333344455555555555555543
No 90
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.92 E-value=3.5 Score=45.30 Aligned_cols=98 Identities=9% Similarity=0.239 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKERE----------IGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~e----------l~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E 315 (458)
......++..++..+......+...+..+... ....+.+++.+......+...|..+... ...+..+
T Consensus 308 vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~---ysel~e~ 384 (569)
T PRK04778 308 VEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA---YSELQEE 384 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHH
Confidence 34455556666666666666666666666655 5566777788888888888888888776 4455567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh
Q 012695 316 LQAVERDIADAENARNEWESKTWDLDSKLGR 346 (458)
Q Consensus 316 ~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~ 346 (458)
.+.+.+.++.++....++.+.+..+...-..
T Consensus 385 leel~e~leeie~eq~ei~e~l~~Lrk~E~e 415 (569)
T PRK04778 385 LEEILKQLEEIEKEQEKLSEMLQGLRKDELE 415 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666654443333
No 91
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.91 E-value=2.5 Score=45.77 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012695 428 AKIEGKRKRIDALQFHINEVSAKKFLFL 455 (458)
Q Consensus 428 ~~i~~k~~e~~~Le~~~~~l~~q~~~~~ 455 (458)
..+.+|..++..|-.+-.++-.+|+.++
T Consensus 342 ~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 342 QALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455544444444444444443
No 92
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.91 E-value=1.5 Score=40.95 Aligned_cols=43 Identities=9% Similarity=0.207 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el 278 (458)
++.|+--+..|.+...|++.-|..++....++...+..+...+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~ 52 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQL 52 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666666666555555554443
No 93
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.87 E-value=2.8 Score=45.97 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 012695 210 ENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVL 246 (458)
Q Consensus 210 ~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L 246 (458)
.....++..++-++.+|+++.-.|+..+.|+.+...|
T Consensus 185 ~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L 221 (563)
T TIGR00634 185 QELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRL 221 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHH
Confidence 3444555666666777776544556666666665554
No 94
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.87 E-value=1.3 Score=39.78 Aligned_cols=55 Identities=29% Similarity=0.403 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 209 KENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK 269 (458)
Q Consensus 209 ~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~ 269 (458)
.+.+.+.++.|+....++| ..+..|..++..|+.|+.+.+.-+...........+
T Consensus 16 ~e~~e~~~K~le~~~~~~E------~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKE------QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555555555555555 367788888888888888888877777766555544
No 95
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.87 E-value=2.9 Score=43.93 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh
Q 012695 267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGR 346 (458)
Q Consensus 267 ~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~ 346 (458)
.++.+..+++-+...+..+.+-..+++.|+- ++.+|+...-.|+...-.--++++..-..+-+.+..+++
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLql----------elkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~Lsk 457 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQL----------ELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSK 457 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------HHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 3555566666666666666666666666654 456677777777766655555556666666777777777
Q ss_pred HHHHHHHH
Q 012695 347 KFKELEAL 354 (458)
Q Consensus 347 ~~~~lE~~ 354 (458)
+-++++.+
T Consensus 458 KeeeverL 465 (527)
T PF15066_consen 458 KEEEVERL 465 (527)
T ss_pred hHHHHHHH
Confidence 77777655
No 96
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.83 E-value=3.6 Score=44.75 Aligned_cols=166 Identities=13% Similarity=0.176 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012695 263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERM-RRELQAVERDIADAENARNEWESKTWDLD 341 (458)
Q Consensus 263 k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rm-n~E~~~L~~~i~~l~~~~~~l~~~~~~~e 341 (458)
.-..|.++...+.++.....++++.++..+..|+..+..-+-..-+...- -.|-......+.-+-..++..++++..+|
T Consensus 176 ~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE 255 (629)
T KOG0963|consen 176 LEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLE 255 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777777888877777766655544444444333 22233333344445555556666666655
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 342 SKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQ 421 (458)
Q Consensus 342 ~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~ 421 (458)
..+.....++ ..-|.....-+ +.|+. ....++ +.+ -..+.+|..+|++......+++.....
T Consensus 256 ~e~e~L~~ql----~~~N~~~~~~~-~~~i~--------~~~~~L--~~k---d~~i~~L~~di~~~~~S~~~e~e~~~~ 317 (629)
T KOG0963|consen 256 REVEQLREQL----AKANSSKKLAK-IDDID--------ALGSVL--NQK---DSEIAQLSNDIERLEASLVEEREKHKA 317 (629)
T ss_pred HHHHHHHHHH----Hhhhhhhhhcc-CCchH--------HHHHHH--hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444443333 33343322211 11110 000001 111 234666778887777777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 422 QSSEMAAKIEGKRKRIDALQFHINE 446 (458)
Q Consensus 422 ~l~~~~~~i~~k~~e~~~Le~~~~~ 446 (458)
+|..+...+..++.+++.|+.+++.
T Consensus 318 qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 318 QISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888887777777776654
No 97
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.76 E-value=4.1 Score=44.90 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=33.7
Q ss_pred HHHHHHHHHhccCCCCCC--CCCCCCCCHHHHHHHHHHHHHccC
Q 012695 63 SAIRAINAHLSSHSFHIA--FPLKQVPSVKDITDVIKFLISQLD 104 (458)
Q Consensus 63 ~~~~~I~~fL~~~~f~~s--~k~l~~PT~KdF~~If~fL~~~iD 104 (458)
...-.|.+++.+.||+-. ..++-=|+.+|...||-||...|-
T Consensus 66 r~~~~lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLiekLP 109 (594)
T PF05667_consen 66 RVGTSLAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLIEKLP 109 (594)
T ss_pred HHHHHHHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHHHHCC
Confidence 456678888899999744 445567889999999999999995
No 98
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.63 E-value=5.3 Score=46.39 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
+...+|++.-..+.-+-.+|-..+..|+..+..-+++|..
T Consensus 1689 ~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~ 1728 (1758)
T KOG0994|consen 1689 ERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALED 1728 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3344555555555555566666666666666555555543
No 99
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.62 E-value=4.5 Score=44.36 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 407 RSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 407 ~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+....+.++...+.+.++.+...=..-|..+..++..+..+...+.
T Consensus 386 ~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 386 EQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555555543
No 100
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=2.6 Score=41.52 Aligned_cols=69 Identities=13% Similarity=0.285 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWES 335 (458)
Q Consensus 264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~ 335 (458)
+..-+.++..++.+....+.+++.+..++.+++..++.. .++|++.+.++..|+.+|+.++..+.+-++
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~---~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDEL---QKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555444555555555555554444333 345666666666666666665555544433
No 101
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.60 E-value=6.2 Score=45.86 Aligned_cols=24 Identities=46% Similarity=0.553 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 243 KCVLEEDLNKFNAIIGELNMRKEK 266 (458)
Q Consensus 243 ~~~L~~D~~Kf~~yi~~~~~k~~~ 266 (458)
...+..++.++...+..++....+
T Consensus 528 ~~~~~~~~e~l~~~~e~~~~~~~~ 551 (908)
T COG0419 528 KEELEEKLEKLENLLEELEELKEK 551 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444555555555544444444
No 102
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.54 E-value=5 Score=44.32 Aligned_cols=122 Identities=12% Similarity=0.159 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 012695 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLV-------EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR 313 (458)
Q Consensus 241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l-------~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn 313 (458)
.....|......+++-++.++.+.....+.+ ..++++|-....+++.-..-...|++-|..|.-+-.--.--+
T Consensus 162 ~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we 241 (739)
T PF07111_consen 162 EALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWE 241 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHH
Confidence 3344455555555555555555543333333 344444555555555555556777888877765433333346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHH-HHHHHHHhcC
Q 012695 314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSM-ECNQAMKRLK 366 (458)
Q Consensus 314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~-~yN~~~~~l~ 366 (458)
.|++.|.+++..++..++.+...+.=+.+ .+..+..++. .=..+++++.
T Consensus 242 ~Er~~L~~tVq~L~edR~~L~~T~ELLqV----RvqSLt~IL~LQEeEL~~Kvq 291 (739)
T PF07111_consen 242 PEREELLETVQHLQEDRDALQATAELLQV----RVQSLTDILTLQEEELCRKVQ 291 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCC
Confidence 78899999999999999988877666666 3344333332 2245566654
No 103
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.50 E-value=5.5 Score=44.56 Aligned_cols=129 Identities=14% Similarity=0.179 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695 238 KLEKEKCVLEEDLNK-------FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE 310 (458)
Q Consensus 238 ~L~~~~~~L~~D~~K-------f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~ 310 (458)
++..++.+++-++.. |.+..+.++.+-.........+++-++..+.++..+..+-++++.+|+.|+--+.-.+
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344444444444432 3333333333333333333444444555566666777777777777777776666666
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695 311 RMRRELQAVERDIADA-------ENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366 (458)
Q Consensus 311 rmn~E~~~L~~~i~~l-------~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~ 366 (458)
......+..++.+..+ ...+..++.++.+..+-.++..-..+..+++||.++.+|.
T Consensus 407 ~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir 469 (1265)
T KOG0976|consen 407 QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIR 469 (1265)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHH
Confidence 6655555544444444 4444455555555555556667788899999999988875
No 104
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=95.48 E-value=1.1 Score=42.68 Aligned_cols=63 Identities=24% Similarity=0.348 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 239 L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
++++...+.+|..|.++-++.-+.+.++.+++...+++..+....|...+-++...|+++|+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 666677777777766666666666666666666666666666666666666666666666653
No 105
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.40 E-value=5.6 Score=44.05 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012695 428 AKIEGKRKRIDALQFHINEVSAKKFLFLQP 457 (458)
Q Consensus 428 ~~i~~k~~e~~~Le~~~~~l~~q~~~~~~~ 457 (458)
..+.+.+..++++..+...|++++..-..|
T Consensus 286 ~ELq~~qe~Lea~~qqNqqL~~qls~~~~~ 315 (617)
T PF15070_consen 286 QELQEAQEHLEALSQQNQQLQAQLSLMALP 315 (617)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence 444556777777888888888887655444
No 106
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.30 E-value=2.7 Score=39.69 Aligned_cols=85 Identities=25% Similarity=0.334 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 250 LNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENA 329 (458)
Q Consensus 250 ~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~ 329 (458)
+....+=|..+..+..+.......++..+..+..++..+..++..|++-++..++- +.+.+..+...++..+......
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~--eReeL~~kL~~~~~~l~~~~~k 140 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLA--EREELQRKLSQLEQKLQEKEKK 140 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch--hHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555556666666666777777777778888888877774 4555555555555555555555
Q ss_pred HHHHHHH
Q 012695 330 RNEWESK 336 (458)
Q Consensus 330 ~~~l~~~ 336 (458)
+..+...
T Consensus 141 i~~Lek~ 147 (194)
T PF15619_consen 141 IQELEKQ 147 (194)
T ss_pred HHHHHHH
Confidence 5544443
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.24 E-value=0.39 Score=48.67 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH
Q 012695 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKL 344 (458)
Q Consensus 265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~ 344 (458)
...+..+..++.|......+++.++.+.++|.+.+....- +...+..+-...-+....+...+.+..+....++..+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~---e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE---ELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555444443221 2222222333333333444444444444444444444
Q ss_pred hhHHHHHH
Q 012695 345 GRKFKELE 352 (458)
Q Consensus 345 ~~~~~~lE 352 (458)
....+.++
T Consensus 123 ~~~~~~L~ 130 (314)
T PF04111_consen 123 EYASNQLD 130 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 108
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.24 E-value=1 Score=43.58 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE 310 (458)
Q Consensus 265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~ 310 (458)
..++..+....+-.+....-+..+++.+..|...-.+--+|.+|++
T Consensus 94 s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfe 139 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFE 139 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHH
Confidence 3344444444444444445555566666666666566666666665
No 109
>PRK10869 recombination and repair protein; Provisional
Probab=95.23 E-value=6 Score=43.35 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=51.7
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCcc--------cccchHHHHHHHHHHHHHHhCCCCChhhhhHHH
Q 012695 130 KSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKA--------FVENNSMYMYASDSYLNYIEGKDGDVDNIDKGF 201 (458)
Q Consensus 130 KS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~~--------~~~~~~~~~y~~~~Y~~fl~g~d~~~e~l~~e~ 201 (458)
||...-=|.+-++-.+-.+...||++.-..++..-.... +.....+...+..+|..|-.-.. ++
T Consensus 102 ~s~~~INg~~v~~~~l~~l~~~li~ihgQ~~~~~ll~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~--------~l 173 (553)
T PRK10869 102 RSRGFINGTPVPLSQLRELGQLLIQIHGQHAHQLLLKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCR--------DL 173 (553)
T ss_pred cceEEECCeeccHHHHHHHHHhhhheeCcChHHHhcCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH--------HH
Confidence 344444455666777777777777765443322211111 12223456666777777733221 11
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 012695 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVL 246 (458)
Q Consensus 202 ~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L 246 (458)
. ++........+++..|+-++.+++...-.|+..+.|+.+...|
T Consensus 174 ~-~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L 217 (553)
T PRK10869 174 A-QHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRL 217 (553)
T ss_pred H-HHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 1 2222223333444555555555555433445555555544443
No 110
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.22 E-value=7 Score=44.16 Aligned_cols=51 Identities=10% Similarity=0.314 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 285 HKRICEENEEFKKRVKLQ--TINARDVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 285 l~~l~~E~~~L~~~v~~Q--~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
-+.|.+..+.+-..+..+ .+|.++ .+|..|.+.+...+..+...++++..+
T Consensus 609 Qe~L~~R~~~vl~~l~~~~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 609 QEKLMKRVDRVLQLLNSQLPVLSEAE-REFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444332 367777 467777777777776666666555443
No 111
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.16 E-value=11 Score=45.90 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=16.9
Q ss_pred HhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCC
Q 012695 336 KTWDLDSKLGRKFKELEALSMECNQAMKRLKL 367 (458)
Q Consensus 336 ~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l 367 (458)
+..+.+-.+.....+++..+..-+..+...++
T Consensus 369 ~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~ 400 (1353)
T TIGR02680 369 RLDEEAGRLDDAERELRAAREQLARAAERAGL 400 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333333444444555566666666666665
No 112
>PRK11281 hypothetical protein; Provisional
Probab=95.14 E-value=9.4 Score=45.17 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKL------QTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDS 342 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~------Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~ 342 (458)
++.+.+++.++..-.++++..++.+++++..+. .+.|..+ +.+...++...+.+.+..+.++..++-..+.
T Consensus 80 ~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~q---LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT 156 (1113)
T PRK11281 80 EETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ---LESRLAQTLDQLQNAQNDLAEYNSQLVSLQT 156 (1113)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444444444444455555555555442222 2333333 3334444455555555555555555555555
Q ss_pred HHhhHHHHHH
Q 012695 343 KLGRKFKELE 352 (458)
Q Consensus 343 ~~~~~~~~lE 352 (458)
...+.-..+.
T Consensus 157 ~PERAQ~~ls 166 (1113)
T PRK11281 157 QPERAQAALY 166 (1113)
T ss_pred chHHHHHHHH
Confidence 4444444433
No 113
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.07 E-value=11 Score=45.70 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
..+..........+...+.++...+.++..++.+...++..+..-.=| ++-+...++.++.+.+..+........+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~--~a~~~~~eL~el~~ql~~~~~~a~~~~~~~ 356 (1353)
T TIGR02680 279 DQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGS--PAYQDAEELERARADAEALQAAAADARQAI 356 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555566666666666666666555444 444444555555555554444444333333
No 114
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.06 E-value=6.9 Score=43.16 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=6.8
Q ss_pred HHHHHHHhcc
Q 012695 65 IRAINAHLSS 74 (458)
Q Consensus 65 ~~~I~~fL~~ 74 (458)
++.|+-||.+
T Consensus 97 ~R~ll~fLie 106 (594)
T PF05667_consen 97 LRRLLMFLIE 106 (594)
T ss_pred HHHHHHHHHH
Confidence 5666777766
No 115
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.04 E-value=9.5 Score=44.70 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 012695 312 MRRELQAVERDIA 324 (458)
Q Consensus 312 mn~E~~~L~~~i~ 324 (458)
|+.+.+.|+.+.-
T Consensus 726 i~~e~e~L~~d~~ 738 (1317)
T KOG0612|consen 726 IEAELEYLSNDYK 738 (1317)
T ss_pred HHHHHHHHhhhhh
Confidence 4444444444443
No 116
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.95 E-value=7.3 Score=42.91 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ----TINARDVE 310 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q----~~S~~di~ 310 (458)
.|....+.+..|...=+|+-+-+-....-+.++..++..-+.=++.+...+..++.|...|+..++.. +.-.+-|.
T Consensus 447 eLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~ 526 (961)
T KOG4673|consen 447 ELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIE 526 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44455555666666666665544444444555544444333223444456666777777776666543 23456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhH
Q 012695 311 RMRRELQAVERDIADAENARNEWESKTWDLDSK 343 (458)
Q Consensus 311 rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~ 343 (458)
+|+.+..+.++.........++++.+..-.+..
T Consensus 527 k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat 559 (961)
T KOG4673|consen 527 KHQAELTRQKDYYSNSRALAAALEAQALAEQAT 559 (961)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 888888777777777777777776665554443
No 117
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.94 E-value=2.1 Score=44.95 Aligned_cols=95 Identities=20% Similarity=0.327 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q 012695 235 EREKLEKEKCVLEEDLNKFNA--------IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA 306 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~--------yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~ 306 (458)
.|.+-+.++..|+-.+.|+.. |+..++.|..-. ....++...|-.++++++.++..+.+|.+. +.
T Consensus 405 ~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksv-sqclEmdk~LskKeeeverLQ~lkgelEka------t~ 477 (527)
T PF15066_consen 405 HLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSV-SQCLEMDKTLSKKEEEVERLQQLKGELEKA------TT 477 (527)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH------HH
Confidence 466666777777777777763 444444443333 344566777788888888888877777633 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 307 RDVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
.-.+++++|++...+.+-.+.......++.
T Consensus 478 SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 478 SALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888777776666655544433
No 118
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.92 E-value=8 Score=43.17 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
++++.+..+...+.+.+.+++.++.++..++.+
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444433
No 119
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.91 E-value=4.3 Score=40.01 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
++.++..++.-|+.+..++.+...++...++++...+.+++.++.++..++..|.
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444445555555555555555555555544443
No 120
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.87 E-value=8.2 Score=43.20 Aligned_cols=52 Identities=15% Similarity=0.355 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 012695 394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGK--------RKRIDALQFHINE 446 (458)
Q Consensus 394 ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k--------~~e~~~Le~~~~~ 446 (458)
.++-+.+|..+|++.+....+ ...|.+.++.++..+..- ++.|++|++++++
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~-ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~ 706 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIR-SSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQ 706 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Confidence 367899999999998888765 555666666666544321 2666667666653
No 121
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.83 E-value=7.7 Score=42.56 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
.+++..+.+.++.+.+...+....+..|...-..-.+++..|
T Consensus 378 ~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~ 419 (560)
T PF06160_consen 378 QEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKL 419 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555444444444443
No 122
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.78 E-value=3.8 Score=38.81 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLV---EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER 311 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l---~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~r 311 (458)
.+..+..++..|..-+.+.+.-+..++.....+++.- ...+..+...+.++..++-+.+-|.. .+..
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~q----------r~~k 118 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQ----------RFEK 118 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 4556667777777777777777777776666655333 33444555556666666666555543 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHH
Q 012695 312 MRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSM 356 (458)
Q Consensus 312 mn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~ 356 (458)
+..||+.|.+... ..+.++++++.-..+-+.+++..+...++
T Consensus 119 le~ErdeL~~kf~---~~i~evqQk~~~kn~lLEkKl~~l~~~lE 160 (201)
T PF13851_consen 119 LEQERDELYRKFE---SAIQEVQQKTGLKNLLLEKKLQALSEQLE 160 (201)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877665 56667777777777777777765555544
No 123
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.74 E-value=8.1 Score=43.85 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR-----VKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~-----v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
.....+....+..++.....+++..+.+.+..+.. .+...++.+.+..++.++...+.....++.+.+.++..
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~ 266 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKA 266 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444443332 12333444566666666666665555555555555443
No 124
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.72 E-value=2 Score=48.39 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012695 347 KFKELEALSMECNQAMKR 364 (458)
Q Consensus 347 ~~~~lE~~v~~yN~~~~~ 364 (458)
.-++|..++.+-|.+-..
T Consensus 697 ~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 697 QGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444445444444333
No 125
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.64 E-value=4.6 Score=39.18 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKF 253 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf 253 (458)
|..++..+..|+.+.+.+
T Consensus 54 L~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 126
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.54 E-value=1.4 Score=42.69 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC 358 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~y 358 (458)
++..++.++..|+..|..++..+......+.-+.-++...++++..+..+|
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444554445554444444444444444555555554444
No 127
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.54 E-value=6 Score=43.89 Aligned_cols=90 Identities=13% Similarity=0.167 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012695 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ----TINARDVERMRRELQAVERDIADAENARNEWESKTWDL 340 (458)
Q Consensus 265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q----~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~ 340 (458)
..+...+..+.+.......++..+..+++.|-.+|..+ .+-..|-.. |. -..+++++.++.++
T Consensus 106 ~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~d-------ls------l~kLeelr~~L~~L 172 (660)
T KOG4302|consen 106 ESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESD-------LS------LEKLEELREHLNEL 172 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCccc-------cc------HHHHHHHHHHHHHH
Confidence 33334444444455555556666666666666666666 111111110 00 02333333334444
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHhcCC
Q 012695 341 DSKLGRKFKELEALSMECNQAMKRLKL 367 (458)
Q Consensus 341 e~~~~~~~~~lE~~v~~yN~~~~~l~l 367 (458)
+-+.+..++.+...+...+.++.-||+
T Consensus 173 ~~ek~~Rlekv~~~~~~I~~l~~~Lg~ 199 (660)
T KOG4302|consen 173 QKEKSDRLEKVLELKEEIKSLCSVLGL 199 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555777777777777888877765
No 128
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=94.54 E-value=1.3 Score=38.22 Aligned_cols=59 Identities=36% Similarity=0.482 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENE 293 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~ 293 (458)
+...|......|+.++.+|..++.....+.....++...-......+..++..+..++.
T Consensus 33 ~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~ 91 (126)
T PF13863_consen 33 REEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELE 91 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688888899999999999999999988887776666655555555555555544333
No 129
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.51 E-value=9 Score=44.38 Aligned_cols=20 Identities=5% Similarity=-0.243 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 012695 12 SALQPTPDLYGGNRFGGSRD 31 (458)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~r~ 31 (458)
+.+|+++|-...++.+.+++
T Consensus 14 ~~~~~~~p~~~~~~~~~~~~ 33 (1041)
T KOG0243|consen 14 QESPCRTPRETQRSNRDSSG 33 (1041)
T ss_pred ccccCCCCCcCCCCccCCCC
Confidence 33555555555555555444
No 130
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.50 E-value=4.4 Score=38.23 Aligned_cols=99 Identities=15% Similarity=0.319 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 216 VEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 216 ~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
+..|..++.++.. .++.+..++..|..=-..-..-+..++..-..+++.|....+|+......+...+.....+
T Consensus 14 i~~L~n~l~elq~------~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 14 IKELQNELAELQR------KLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444442 3445555555554333232334444555556666666667777766666666666666666
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695 296 KKRVKLQTINARDVERMRRELQAVERDI 323 (458)
Q Consensus 296 ~~~v~~Q~~S~~di~rmn~E~~~L~~~i 323 (458)
...+.... +++.+.+.+...|++-+
T Consensus 88 ~~klk~~~---~el~k~~~~l~~L~~L~ 112 (194)
T PF15619_consen 88 ERKLKDKD---EELLKTKDELKHLKKLS 112 (194)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 55554432 24445555555554433
No 131
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.41 E-value=3.5 Score=36.96 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (458)
Q Consensus 243 ~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~ 297 (458)
...|..++.+++.-+...+.+....+.+...++.++......++...++..+++.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444333444444444444443
No 132
>PRK14011 prefoldin subunit alpha; Provisional
Probab=94.30 E-value=2.1 Score=38.39 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh
Q 012695 312 MRRELQAVERDIADAENARNEWESKTWDLDSKLGR 346 (458)
Q Consensus 312 mn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~ 346 (458)
||.|.+.+.-.++.+..+.+.+++.+..+....++
T Consensus 1 ~~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e 35 (144)
T PRK14011 1 MNEELQNQFMALEVYNQQVQKLQEELSSIDMMKME 35 (144)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555554443333
No 133
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.21 E-value=9.1 Score=43.36 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
++.++.+.-+.+.-.+|....+..+.+.-..+-.+.....+.++..+.-+.+.+.++..|...|.
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le 476 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLE 476 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45555555556666666666556665555555555555555555444444455555555544443
No 134
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.71 Score=49.92 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhccCCCC
Q 012695 39 SRPSSIGMGRASAAD-LYTDRSHQSSAIRAINAHLSSHSFH 78 (458)
Q Consensus 39 sr~s~~g~~~~~DpR-pl~DK~~q~~~~~~I~~fL~~~~f~ 78 (458)
||.-|.|.||-|-.| --+-.+-..+..++|-+=|..-|++
T Consensus 143 sR~RS~g~GGwSq~RY~R~vh~av~~~~reIee~L~~agld 183 (652)
T COG2433 143 SRGRSLGPGGWSQNRYRRRVHGAVKRVVREIEEKLDEAGLD 183 (652)
T ss_pred EecccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 566666666543111 1122346677778888888887753
No 135
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=6.9 Score=43.59 Aligned_cols=129 Identities=18% Similarity=0.249 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E 315 (458)
.......+..|..+..++..-+..+......+..++..+++.+.........+..+...+...+...+=.+.|+.+ .
T Consensus 491 ~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~---~ 567 (698)
T KOG0978|consen 491 RIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQ---S 567 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3344555566666666666666666666666666666666666666677777777777777777777777777654 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh---HHHHHHHHHHHHHHHHHhcCC
Q 012695 316 LQAVERDIADAENARNEWESKTWDLDSKLGR---KFKELEALSMECNQAMKRLKL 367 (458)
Q Consensus 316 ~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~---~~~~lE~~v~~yN~~~~~l~l 367 (458)
.+.|+-.++.....+.+++..+.+...++.. +...++.=+...|.-+.+++-
T Consensus 568 ~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 568 LEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6777777777788888888887777766643 335667777777777777663
No 136
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.04 E-value=11 Score=41.14 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH-----HHHH-------HHHHHHHHHHHHHHHH----HHHHHHHHHhhH
Q 012695 276 REIGKKVEEHKRICEENEEFKKRVKLQTINAR-----DVER-------MRRELQAVERDIADAE----NARNEWESKTWD 339 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~-----di~r-------mn~E~~~L~~~i~~l~----~~~~~l~~~~~~ 339 (458)
.+++..+.-+..++.|++.|..++..++=+.. +++. +-.++..|..+|+.++ ..++.+..++..
T Consensus 242 ~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~ 321 (629)
T KOG0963|consen 242 TELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISA 321 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777777777777766654432 3332 3345555555554333 334444445555
Q ss_pred HHhHHhhHHHHHHHHH
Q 012695 340 LDSKLGRKFKELEALS 355 (458)
Q Consensus 340 ~e~~~~~~~~~lE~~v 355 (458)
+|..+..+...++.+-
T Consensus 322 le~~l~~~~~~leel~ 337 (629)
T KOG0963|consen 322 LEKELKAKISELEELK 337 (629)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655555555444443
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.99 E-value=3.1 Score=43.53 Aligned_cols=16 Identities=25% Similarity=0.604 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhC
Q 012695 174 SMYMYASDSYLNYIEG 189 (458)
Q Consensus 174 ~~~~y~~~~Y~~fl~g 189 (458)
-.|+|..+.|-+-+-.
T Consensus 278 rVWDYAGDnYVhRl~~ 293 (493)
T KOG0804|consen 278 RVWDYAGDNYVHRLPQ 293 (493)
T ss_pred eeeecccchhhhhccc
Confidence 4689999999877653
No 138
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.96 E-value=11 Score=40.92 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 396 PALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 396 ~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
..|.++..+...... +....+..+..+...++..+..+.+++.++...
T Consensus 372 ~~Lqql~~Eae~Ak~----ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa 419 (522)
T PF05701_consen 372 KALQQLSSEAEEAKK----EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA 419 (522)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555543322 222334444444444455555555555554443
No 139
>PF13166 AAA_13: AAA domain
Probab=93.96 E-value=13 Score=41.69 Aligned_cols=61 Identities=21% Similarity=0.406 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhH---HhhHHHHHHHHHHHHHHHHHhcCC
Q 012695 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSK---LGRKFKELEALSMECNQAMKRLKL 367 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~---~~~~~~~lE~~v~~yN~~~~~l~l 367 (458)
.+++....+...+.+.+..+...+..+...+...+.. +...+...+..++.+|..+..+|.
T Consensus 410 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~ 473 (712)
T PF13166_consen 410 EDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGF 473 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 3444444455555555555555555555444444443 333445567788889999998864
No 140
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.90 E-value=1.3 Score=40.57 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695 274 KEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323 (458)
Q Consensus 274 l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i 323 (458)
+...+...+.+++.++.....|+. ....+|++++.++..+...+.+..
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~--~~~~vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS--GSKPVSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555556655 555689999998887777665544
No 141
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.85 E-value=0.35 Score=45.51 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
+..|+.+...|+..+.....-+.....-++.+...+..++-++...+..+..++.|+.+|-.+.
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444455555555555555556665554443
No 142
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.82 E-value=3.3 Score=36.01 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVER 321 (458)
Q Consensus 308 di~rmn~E~~~L~~ 321 (458)
++..+..+...|+.
T Consensus 69 ~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 69 EVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 143
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.82 E-value=7.5 Score=38.43 Aligned_cols=64 Identities=17% Similarity=0.372 Sum_probs=44.5
Q ss_pred CCCC--CCCCCCCCCCHHHHHHHHHHHHHccCCCC----CcchHhHHHHHHHhcC------CCCccccccccCCCC
Q 012695 75 HSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS----TTKFEEDLFVVLKSLS------CPFKINKSTLRSPNS 138 (458)
Q Consensus 75 ~~f~--~s~k~l~~PT~KdF~~If~fL~~~iD~~~----~~k~EeEv~~~lK~L~------YP~~IsKS~L~avG~ 138 (458)
-||| |||-.+++|.-.=--.|..||..++||.. +-.-|++=+.|+|... .-..+|---|++..|
T Consensus 3 LGypr~iSmenFrtPNF~LVAeiL~WLv~rydP~~~i~~~i~tE~dRV~Fik~v~~~~~tKa~IKLN~KkLY~ADG 78 (267)
T PF10234_consen 3 LGYPRLISMENFRTPNFELVAEILRWLVKRYDPDADIPGDIDTEQDRVFFIKSVAEFMATKARIKLNPKKLYQADG 78 (267)
T ss_pred CCCCCCCcHHHcCCCChHHHHHHHHHHHHHcCCCCCCCCcCCcHHHHHHHHHHHHHHHHHHhheeecHHHHHHhhH
Confidence 4898 78888899988888999999999999864 3333555566666543 122455555666555
No 144
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.82 E-value=17 Score=42.37 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
..+..+...+..+...++..+..+..++..+..+
T Consensus 410 ~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 410 EELEELEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555553
No 145
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.81 E-value=18 Score=42.62 Aligned_cols=27 Identities=26% Similarity=0.200 Sum_probs=14.6
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCHHHHHH
Q 012695 66 RAINAHLSSHSFHIAFPLKQVPSVKDITD 94 (458)
Q Consensus 66 ~~I~~fL~~~~f~~s~k~l~~PT~KdF~~ 94 (458)
.+|+++=..-+||-..+ -|+..||++.
T Consensus 291 ~KIm~hk~~l~FP~~~~--VSeeakdLI~ 317 (1317)
T KOG0612|consen 291 GKIMNHKESLSFPDETD--VSEEAKDLIE 317 (1317)
T ss_pred HHHhchhhhcCCCcccc--cCHHHHHHHH
Confidence 45566544556772222 4566777654
No 146
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=16 Score=41.09 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (458)
Q Consensus 239 L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~ 297 (458)
.++....+.+-++|+...|..+...++.+.+...+|+.|.+..++++.....+...|+.
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~ 706 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKD 706 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677777777777766666666666655555555555444444444433
No 147
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.44 E-value=9.5 Score=38.38 Aligned_cols=87 Identities=18% Similarity=0.293 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAII-GELNMRKEKMEKLVEEKEREIGK-KVEEHKRICEENEEFKKRVKLQTINARDVERM 312 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi-~~~~~k~~~~e~~l~~l~~el~~-~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rm 312 (458)
++..|.+++..|..++.+=+.++ +.+..+..++...-..++..+++ .+..+..+...+.+|....... ....+++
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~---q~~le~L 161 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAK---QEELERL 161 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---HHHHHHH
Confidence 45556666666655555554443 33344444444444444444433 2233344444444443332111 1234444
Q ss_pred HHHHHHHHHHHH
Q 012695 313 RRELQAVERDIA 324 (458)
Q Consensus 313 n~E~~~L~~~i~ 324 (458)
..|...|++.++
T Consensus 162 r~EKVdlEn~LE 173 (310)
T PF09755_consen 162 RREKVDLENTLE 173 (310)
T ss_pred HHHHHhHHHHHH
Confidence 444444444443
No 148
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.43 E-value=5.1 Score=35.23 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMR--------KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINAR 307 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k--------~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~ 307 (458)
...+......+..|+.+-..+....+.+ ... -+.|..++.++.....++..++.+....+..+....-|.
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw- 96 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAELEESEASW- 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 4445555666677777666655555544 222 244444445554444445555544444444443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEWES 335 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~ 335 (458)
..++..|.+.+..++.+++++..
T Consensus 97 -----~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 97 -----EEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444444444443
No 149
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.41 E-value=5.5 Score=35.56 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
++..+.....+..|...-++.+..++..+..+...+..+..+|.....+...+.++....+.+
T Consensus 33 Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 33 LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555555555555555555555444444444444444443
No 150
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.35 E-value=1.6 Score=44.33 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
+..++..+++.+...++.....++.+++.
T Consensus 107 ~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 107 ELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566777777777777777766653
No 151
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.25 E-value=4.2 Score=35.35 Aligned_cols=20 Identities=10% Similarity=0.395 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012695 314 RELQAVERDIADAENARNEW 333 (458)
Q Consensus 314 ~E~~~L~~~i~~l~~~~~~l 333 (458)
.+...|+..+..++.+.+.+
T Consensus 68 ~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 152
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.23 E-value=7.9 Score=36.87 Aligned_cols=132 Identities=21% Similarity=0.264 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI-NARDVERMR 313 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~-S~~di~rmn 313 (458)
.+..+..++..+..|+..++.-..++-.+.+++...+..++..-+.....+++....+.....+..+-+- ..+.++.-|
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~AN 149 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKAN 149 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888888888888888888887777777655444443343333333333333222221 123455556
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695 314 RELQAVERD----IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366 (458)
Q Consensus 314 ~E~~~L~~~----i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~ 366 (458)
.|++.+.+. +..+...+...+-++..++..+..+..+.+.+..-|-.+..+++
T Consensus 150 eei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 150 EEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 665555444 34566666666667777777787888888888888877776654
No 153
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.16 E-value=23 Score=42.10 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH
Q 012695 311 RMRRELQAVERDIADAENARNEWESKTWDLDSKL 344 (458)
Q Consensus 311 rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~ 344 (458)
.|...+..++..+.+++.+...+.+...++....
T Consensus 315 ~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~ 348 (1294)
T KOG0962|consen 315 EMGEKLRELEREISDLNEERSSLIQLKTELDLEQ 348 (1294)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655555555544433
No 154
>PF09762 KOG2701: Coiled-coil domain-containing protein (DUF2037); InterPro: IPR019159 This entry represents a family of coiled-coil-containing proteins conserved from plants to vertebrates. It includes Drosophila fidipidine, whose function is unknown.
Probab=93.14 E-value=2.9 Score=38.96 Aligned_cols=84 Identities=17% Similarity=0.388 Sum_probs=61.9
Q ss_pred HHHHHHhccCCCC-CCCCCCCCCCHHHHHHH---HHHHHHccCCCC------------Ccc--hHhHHHHHHHhcCCCCc
Q 012695 66 RAINAHLSSHSFH-IAFPLKQVPSVKDITDV---IKFLISQLDYPS------------TTK--FEEDLFVVLKSLSCPFK 127 (458)
Q Consensus 66 ~~I~~fL~~~~f~-~s~k~l~~PT~KdF~~I---f~fL~~~iD~~~------------~~k--~EeEv~~~lK~L~YP~~ 127 (458)
+.|++.|..-||. ..+++ -..|-.| +.|.....++.+ +.| .-+.|...|+.++|||.
T Consensus 3 ~~I~~~L~~aGY~RaRv~~-----Ls~fDkivGGi~W~i~~~~~~v~~dllf~E~~~i~~Ki~~~ekIv~~L~~m~CP~~ 77 (182)
T PF09762_consen 3 QEILDLLSAAGYHRARVKS-----LSPFDKIVGGITWCITRCNVDVDVDLLFQENSTIGQKIALCEKIVEALPKMKCPHR 77 (182)
T ss_pred HHHHHHHHHcCccHHHhcC-----CChHHHHHhHHHHHHHhcCCCCCccchhcccccHHHHHHHHHHHHHHHHhCCCCCC
Confidence 6899999999997 33443 2344444 677777666321 222 24779999999999999
Q ss_pred cccccccCCCCCCChHHHHHHHHHHHHHHhh
Q 012695 128 INKSTLRSPNSPHNWPAYLALIHWLVQIASY 158 (458)
Q Consensus 128 IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~ 158 (458)
|+--+|. | -.+|++.-++.|||.=+.-
T Consensus 78 l~phQi~--g--lDf~~i~PVvqWLvkr~~e 104 (182)
T PF09762_consen 78 LEPHQIQ--G--LDFIHIFPVVQWLVKRVLE 104 (182)
T ss_pred CCHHHHh--c--CCHHHHHHHHHHHHHHHHH
Confidence 9999887 2 2899999999999987543
No 155
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.12 E-value=11 Score=41.35 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 012695 348 FKELEALSMECNQAMKRL 365 (458)
Q Consensus 348 ~~~lE~~v~~yN~~~~~l 365 (458)
+++++.-+..++.+.++.
T Consensus 303 L~ele~RL~~l~~LkrKy 320 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKY 320 (563)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555555555555543
No 156
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=93.10 E-value=9.2 Score=37.24 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 012695 252 KFNAIIGELNMRKEKMEKLVEEKE----REIG-----KKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322 (458)
Q Consensus 252 Kf~~yi~~~~~k~~~~e~~l~~l~----~el~-----~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~ 322 (458)
+|..|...+....+-+++-|.+.+ .+++ -.....+.+...+.-++..|-.-.+|++.|.-++.=++.|...
T Consensus 107 q~~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~iL~~TYTpe~v~Al~~Ir~~L~~~ 186 (238)
T PF14735_consen 107 QFATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEAMILKLRVLELEILSDTYTPETVPALRKIRDHLEEA 186 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhHHHHHHHHHHHHHH
Confidence 455555555555555555444332 2221 2234456666677777788888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhc
Q 012695 323 IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL 365 (458)
Q Consensus 323 i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l 365 (458)
+...+.++....+.....|. .-.+++.++.+|..+...|
T Consensus 187 ~~~~e~~~~~a~~~L~~Ye~----lg~~F~~ivreY~~l~~~i 225 (238)
T PF14735_consen 187 IEELEQELQKARQRLESYEG----LGPEFEEIVREYTDLQQEI 225 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhc----ccHhHHHHHHHHHHHHHHH
Confidence 99999999999888777665 5556788899998887765
No 157
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.06 E-value=24 Score=41.88 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=12.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Q 012695 303 TINARDVERMRRELQAVERDIADA 326 (458)
Q Consensus 303 ~~S~~di~rmn~E~~~L~~~i~~l 326 (458)
.++.+....++.|+..++..++.+
T Consensus 169 ~l~~a~~~~lqae~~~l~~~~~~l 192 (1109)
T PRK10929 169 PLAQAQLTALQAESAALKALVDEL 192 (1109)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544433
No 158
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=93.01 E-value=14 Score=38.94 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=25.5
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 300 KLQTINARDVERMRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 300 ~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
-...++++|+..+.-..-.|..+|.+++.+...++..+.+
T Consensus 316 ve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~ 355 (554)
T KOG4677|consen 316 VELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQT 355 (554)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 3456777777777777777777666666666555554433
No 159
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.01 E-value=22 Score=41.37 Aligned_cols=77 Identities=22% Similarity=0.151 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERM 312 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rm 312 (458)
++.+++....+++...-....-..+..++.+++.+|.....++...++++.+++.....-...|..|.-|..-+.+.
T Consensus 457 l~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~ 533 (1041)
T KOG0243|consen 457 LENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDR 533 (1041)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333334555556666666666666666666666666555555555577776665555444
No 160
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.87 E-value=16 Score=40.97 Aligned_cols=140 Identities=17% Similarity=0.157 Sum_probs=91.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 205 LEKEKENVSEYVEELKKKVSEMEGAMTGP------TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (458)
Q Consensus 205 l~~~~~~~~e~~~~L~~e~~eLe~l~~~~------~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el 278 (458)
|..+...+..+++.|.+.+.+-|.-.... -.+..|+.-+..|+..++.-..-.+.++.+.+++-+.++..++|-
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 44455555556666666555544422111 157788888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHH
Q 012695 279 GKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKE 350 (458)
Q Consensus 279 ~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~ 350 (458)
......+.+-..+..+.+++.+ .+..|++.|.++.--.+..+.-++++.+.....+.+.+..+=.+
T Consensus 472 k~~~~~~~ekd~~l~~~kq~~d------~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 472 KRLRKMFQEKDQELLENKQQFD------IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHH
Confidence 7766666666666665555433 35667777777666666666666666666655555555443333
No 161
>PF13514 AAA_27: AAA domain
Probab=92.83 E-value=26 Score=41.74 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=18.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 012695 133 LRSPNSPHNWPAYLALIHWLVQIASYNYH 161 (458)
Q Consensus 133 L~avG~pHsWP~~Lg~L~WLv~l~~~~~~ 161 (458)
..+.|.| ..| -.|+.||...-.....
T Consensus 591 ~~~~g~p-~~p--~~~~~Wl~~~~~~~~~ 616 (1111)
T PF13514_consen 591 WAAAGLP-LSP--AEMRDWLARREAALEA 616 (1111)
T ss_pred HhhcCCC-CCh--HHHHHHHHHHHHHHHH
Confidence 4566766 457 8999999988765543
No 162
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.73 E-value=16 Score=39.13 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
..+..++.++...+.++..++.....|+..+..
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555566666666666666666667666653
No 163
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.71 E-value=11 Score=37.13 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHH
Q 012695 314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354 (458)
Q Consensus 314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~ 354 (458)
++...-+..+..++.++......+..++..+.+...+||..
T Consensus 88 hdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 88 HDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555555555555555555555555543
No 164
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=17 Score=39.25 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKERE---IGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR 313 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~e---l~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn 313 (458)
.++.+...|.+++..++---..+-+...+++...-.+++. |...+.|.+-++-++++|...+.--+.-.+|..+++
T Consensus 146 ~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk 224 (772)
T KOG0999|consen 146 AVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLK 224 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555433332233333344444333333322 334466777777788888776666665566665553
No 165
>PRK11281 hypothetical protein; Provisional
Probab=92.64 E-value=27 Score=41.47 Aligned_cols=83 Identities=6% Similarity=0.008 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL-----QTINARDVERMRRELQAVE 320 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~-----Q~~S~~di~rmn~E~~~L~ 320 (458)
|++.+...++-..+.+.....+...+...+...++.+..+.+......+++.++.+ -.+|.+....++.|...++
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 44444444444455555666666666666666666666667777777777777765 3467777888888887777
Q ss_pred HHHHHHHH
Q 012695 321 RDIADAEN 328 (458)
Q Consensus 321 ~~i~~l~~ 328 (458)
..++..+.
T Consensus 206 ~~~~~~~~ 213 (1113)
T PRK11281 206 AQNDLQRK 213 (1113)
T ss_pred HHHHHHHH
Confidence 66554433
No 166
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=20 Score=40.01 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 395 KPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 395 k~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
...+.+.+-++.+....++.++.+.+..+..+...+.+.+.+++.+..+...+++.+
T Consensus 554 le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~ 610 (698)
T KOG0978|consen 554 LEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEEL 610 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555666666666666666666665555555554443
No 167
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.60 E-value=0.034 Score=62.53 Aligned_cols=43 Identities=9% Similarity=0.158 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhccC-CCCCCCCCC-------CCCCHHHHHHHHHHHHHcc
Q 012695 61 QSSAIRAINAHLSSH-SFHIAFPLK-------QVPSVKDITDVIKFLISQL 103 (458)
Q Consensus 61 q~~~~~~I~~fL~~~-~f~~s~k~l-------~~PT~KdF~~If~fL~~~i 103 (458)
-..+++.|.+|..+. |.+++.-++ ..|...+...+...|..+-
T Consensus 72 Lk~l~~~i~~yy~e~L~~~i~~~~~Pd~~~Iae~~d~~El~kLL~LlLgcA 122 (713)
T PF05622_consen 72 LKKLLRNIKSYYQEELGQQISEMPLPDLQAIAENSDPEELKKLLQLLLGCA 122 (713)
T ss_dssp HHHHHHHHHHHHHTTT-----TTT---HHHHHTT--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCcCcCCCCCHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 346788888998873 434331111 4567777766766666644
No 168
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=92.38 E-value=5.5 Score=35.17 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 416 ~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
...+++.++.+...+..++.+++.++..+.++.++.
T Consensus 103 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 103 KEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555566666666666666666666665543
No 169
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=16 Score=38.36 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=17.5
Q ss_pred HhHHHHHHHhcCCCCccccccccCCCCC
Q 012695 112 EEDLFVVLKSLSCPFKINKSTLRSPNSP 139 (458)
Q Consensus 112 EeEv~~~lK~L~YP~~IsKS~L~avG~p 139 (458)
-..|-.-.|.||||..+.=-.+--|..+
T Consensus 67 a~siAq~ckdlgyrgD~gyqtfLypn~~ 94 (521)
T KOG1937|consen 67 ANSIAQYCKDLGYRGDTGYQTFLYPNIN 94 (521)
T ss_pred HHHHHHHHHHcCCCcccchhheecCCcc
Confidence 4667778888888886554333333443
No 170
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.36 E-value=7.1 Score=40.98 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
..++......++++.+++..+...+.+++.++++++.|
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555555555444444
No 171
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=2.6 Score=45.71 Aligned_cols=29 Identities=7% Similarity=0.052 Sum_probs=20.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccCCCCC
Q 012695 51 AADLYTDRSHQSSAIRAINAHLSSHSFHI 79 (458)
Q Consensus 51 DpRpl~DK~~q~~~~~~I~~fL~~~~f~~ 79 (458)
|..+|.=.|...-.--+|.+|..+.|-|+
T Consensus 263 dGevl~~~S~r~~~~~eVve~I~~lG~Pv 291 (652)
T COG2433 263 DGEVLDLESRRGIDRSEVVEFISELGKPV 291 (652)
T ss_pred CCcEEeeeccccCCHHHHHHHHHHcCCce
Confidence 66677767777777777777777777774
No 172
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.24 E-value=8.1 Score=40.06 Aligned_cols=8 Identities=0% Similarity=-0.056 Sum_probs=4.0
Q ss_pred HHHHHhCC
Q 012695 183 YLNYIEGK 190 (458)
Q Consensus 183 Y~~fl~g~ 190 (458)
+..++.+.
T Consensus 100 l~~~~~~~ 107 (423)
T TIGR01843 100 LRAEADSQ 107 (423)
T ss_pred HHHHHcCC
Confidence 34565553
No 173
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=25 Score=40.02 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSA 449 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~ 449 (458)
.+|+..+++.++.+.+.+++....++++..++..||.
T Consensus 773 e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~ 809 (984)
T COG4717 773 EEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEG 809 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888888888888888888888888887763
No 174
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.13 E-value=4.5 Score=39.19 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
+.+++-+..+.++.+.++.|..|-.+.+++|..|.+.+..|...|.
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556666666666666666666666666666666666554
No 175
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.12 E-value=11 Score=35.55 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCCCCChHHH--------HHHHHHHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHHH
Q 012695 136 PNSPHNWPAY--------LALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNY 186 (458)
Q Consensus 136 vG~pHsWP~~--------Lg~L~WLv~l~~~~~~~~~~~~~~~~~~~~~~y~~~~Y~~f 186 (458)
|-.||--|-+ ..|+.|++-++.+.+.+..-.. +.....|....+|...+
T Consensus 25 PQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~i--dd~~~~f~~~~~tl~~L 81 (190)
T PF05266_consen 25 PQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQI--DDSRSSFESLMKTLSEL 81 (190)
T ss_pred CCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHccc--CCcHHHHHHHHHHHHHH
Confidence 3456655533 4577888888887777665443 22356677777777776
No 176
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.01 E-value=10 Score=37.36 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
+.+...+...+..++++++.....+..+...+...+..+.
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444433333
No 177
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=91.78 E-value=22 Score=38.56 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ----TINARDVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q----~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
+.....+++.+..+...+..+..++....+...+|+.++..| ..+..+.+.+..+..+++..++.++.+..+..+.
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~a 492 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTA 492 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777788888888888778887777666 3455666666666666666555444444333333
Q ss_pred h
Q 012695 337 T 337 (458)
Q Consensus 337 ~ 337 (458)
.
T Consensus 493 l 493 (607)
T KOG0240|consen 493 L 493 (607)
T ss_pred H
Confidence 3
No 178
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.73 E-value=6.2 Score=35.34 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN 292 (458)
Q Consensus 237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~ 292 (458)
+.+..+...+..|+..+..-+..++.+.+..+.++...+....+...++..+....
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666555555555555555555444444444444444444333333
No 179
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=91.64 E-value=9.6 Score=34.10 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695 244 CVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323 (458)
Q Consensus 244 ~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i 323 (458)
..-..++..|+++-..++.++-...+++...-..++.....+..|..+.+ .-.+=|..|...+.+.|
T Consensus 27 ~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE-------------~l~dP~RkEv~~vRkkI 93 (159)
T PF04949_consen 27 EMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELE-------------VLADPMRKEVEMVRKKI 93 (159)
T ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------------hhccchHHHHHHHHHHH
Confidence 33456888888888887777777766665443333333333333333222 12345778888888889
Q ss_pred HHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695 324 ADAENARNEWESKTWDLDSKLGRKFK 349 (458)
Q Consensus 324 ~~l~~~~~~l~~~~~~~e~~~~~~~~ 349 (458)
+.+..++.-+-+.+...|.++...++
T Consensus 94 D~vNreLkpl~~~cqKKEkEykeale 119 (159)
T PF04949_consen 94 DSVNRELKPLGQSCQKKEKEYKEALE 119 (159)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 98888888888777665554444433
No 180
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.52 E-value=8.6 Score=36.76 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhc
Q 012695 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL 365 (458)
Q Consensus 286 ~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l 365 (458)
+....++..++..+.+++==.++.+.++.+...|+.++++....++.++.++..+..+.....++...++++|+.+-.++
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 55666777777777776543455566666677777777777777777777777766666667777777788887776655
Q ss_pred C
Q 012695 366 K 366 (458)
Q Consensus 366 ~ 366 (458)
.
T Consensus 210 ~ 210 (216)
T KOG1962|consen 210 E 210 (216)
T ss_pred h
Confidence 4
No 181
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.48 E-value=5.6 Score=31.36 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 201 FIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKM 267 (458)
Q Consensus 201 ~~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~ 267 (458)
..++|+..+....+.+..|+.++++|.. ....|..++..|.....+++.=...++.++..+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke------~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKE------KNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777788888888888887764 233444444445444444443334444444333
No 182
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.39 E-value=33 Score=39.73 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFN 254 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~ 254 (458)
.+..|+.+...|+.|+++|.
T Consensus 203 ~l~~L~~~~~~l~kdVE~~r 222 (1072)
T KOG0979|consen 203 KLNRLEDEIDKLEKDVERVR 222 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666665544
No 183
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.35 E-value=8.8 Score=37.45 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695 328 NARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366 (458)
Q Consensus 328 ~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~ 366 (458)
.+++.+.....+-++..+.++..+-.....-+...+.+.
T Consensus 131 ~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~yg~~i~ 169 (251)
T PF11932_consen 131 ERLARLRAMLDDADVSLAEKFRRVLEAYQIEMEYGRTIE 169 (251)
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCcee
Confidence 344444455555555555555555554444455444444
No 184
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=91.24 E-value=18 Score=36.42 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAEN 328 (458)
Q Consensus 268 e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~ 328 (458)
+..+...+..++..+.++...+.+.++.+.-.+..-+|..++++...+....+..++.+..
T Consensus 107 ~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 107 QAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666677777778888888888888889999999888888877777766555
No 185
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.91 E-value=4.6 Score=38.47 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFK 296 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~ 296 (458)
+...+++..++.....+.+++.++.+|+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~ 145 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLK 145 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444554444443
No 186
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=90.70 E-value=1.2 Score=43.71 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 272 EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 272 ~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
+.+..+....+..++.++.+.++|...++.-+ +++|+-.+..++.+++.+|+.++.++..+.++
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666677788888899999999998555 99999999999999888888887777666554
No 187
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.68 E-value=20 Score=35.94 Aligned_cols=200 Identities=16% Similarity=0.253 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E 315 (458)
...+..+...|..-+..+.+-+..+..+....-+.+.+++++.......+..+-.+...+....+.-..+.-++..+..+
T Consensus 36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~ 115 (294)
T COG1340 36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLERE 115 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence 33444555555555555555555555555555566666666666666666666666666666666433444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccc-cchhhch
Q 012695 316 LQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMG-VDYKSTL 394 (458)
Q Consensus 316 ~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~-~d~k~~i 394 (458)
+++|....... ...-+.|..+...+..|...+..--..... . ..+. .-.+++-. .+-...+
T Consensus 116 i~~Le~~~~T~--------~L~~e~E~~lvq~I~~L~k~le~~~k~~e~-~--~~~~-------el~aei~~lk~~~~e~ 177 (294)
T COG1340 116 IERLEKKQQTS--------VLTPEEERELVQKIKELRKELEDAKKALEE-N--EKLK-------ELKAEIDELKKKAREI 177 (294)
T ss_pred HHHHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHH-------HHHHHHHHHHHHHHHH
Confidence 55554433210 011112223333333333333221111000 0 0000 00011111 0112334
Q ss_pred hHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 395 KPALESFADDVKR----------SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 395 k~~L~~l~~~i~~----------~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
..-+..|+++++. .+.....+...++..+-.....+++.+.++-.++..++.++..+..
T Consensus 178 ~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~ 246 (294)
T COG1340 178 HEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKA 246 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555543 2222345566667777777777777788888888888877776543
No 188
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.63 E-value=2.9 Score=35.21 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 268 e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
-..+-.+..+......+++.+..+...+.+.|....-+.++++.+..+...+.+.+..++.+..+++.++..
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666677777777777777777666655677777777777777777777777666655433
No 189
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.60 E-value=7.2 Score=30.75 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 259 ELNMRKEKMEKLVEEKEREIGKKVE 283 (458)
Q Consensus 259 ~~~~k~~~~e~~l~~l~~el~~~~~ 283 (458)
.++.++...-..|..++.+++..+.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333333
No 190
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.56 E-value=17 Score=35.46 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG 279 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~ 279 (458)
...|..++..|...+..++.|++.++......++++..++.+++
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555544444444444443
No 191
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.47 E-value=14 Score=33.96 Aligned_cols=72 Identities=17% Similarity=0.316 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA--RDVERMRRELQAVERDIADAENARNEWES 335 (458)
Q Consensus 264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~--~di~rmn~E~~~L~~~i~~l~~~~~~l~~ 335 (458)
+......+..+.+++.....+...+...+.+|+..-..=.... .|.++...+.+.+++.|..++...+.++.
T Consensus 100 l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 100 LKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444555555555544433322221 24555555555555555555555444443
No 192
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.38 E-value=22 Score=35.91 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ 317 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~ 317 (458)
.++++-..|-.|+.+ -+.....++..+...|....++......++..+..++..|+..+..-. .|.+
T Consensus 192 ~~EekEqqLv~dcv~---QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~----------~EnE 258 (306)
T PF04849_consen 192 TYEEKEQQLVLDCVK---QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLA----------AENE 258 (306)
T ss_pred hccHHHHHHHHHHHH---HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHH
Confidence 555555555555421 113333445555555555555555555555555555555555544332 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 012695 318 AVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 318 ~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
.|...+......-..+...+.+
T Consensus 259 eL~q~L~~ske~Q~~L~aEL~e 280 (306)
T PF04849_consen 259 ELQQHLQASKESQRQLQAELQE 280 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443344444333
No 193
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.38 E-value=31 Score=37.72 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHhHHhhH-HHHHHHHH
Q 012695 284 EHKRICEENEEFKKRVKLQTINARDVER----MRRELQAVERD---IADAENARNEWESKTWDLDSKLGRK-FKELEALS 355 (458)
Q Consensus 284 el~~l~~E~~~L~~~v~~Q~~S~~di~r----mn~E~~~L~~~---i~~l~~~~~~l~~~~~~~e~~~~~~-~~~lE~~v 355 (458)
.++.++.....|......=+.+++|+-. |..|++.|... +..++.+...+..+....=.+++.. .+....+-
T Consensus 298 ~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~ 377 (557)
T COG0497 298 RLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELE 377 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555432 23333332221 1223333333333332222222221 12333333
Q ss_pred HHHHHHHHhcCC-CCcceEecCC
Q 012695 356 MECNQAMKRLKL-ATEIQYSLNS 377 (458)
Q Consensus 356 ~~yN~~~~~l~l-~~d~~~~ln~ 377 (458)
..-+..+..|++ +..|.+.+++
T Consensus 378 ~~v~~eL~~L~Me~a~F~ve~~~ 400 (557)
T COG0497 378 KEVTAELKALAMEKARFTVELKP 400 (557)
T ss_pred HHHHHHHHhcCCCCceEEEEecc
Confidence 444555666777 4467777766
No 194
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.21 E-value=1 Score=50.79 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 434 RKRIDALQFHINEVSAKK 451 (458)
Q Consensus 434 ~~e~~~Le~~~~~l~~q~ 451 (458)
+..+++|+++...|.+++
T Consensus 565 ~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 195
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.14 E-value=23 Score=35.93 Aligned_cols=44 Identities=7% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 293 ~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
.+|...+..-+-.+-|||-+-.|-..|...|..++.+++-+.+.
T Consensus 175 ~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 175 HELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555655666677777777777777777666665555444
No 196
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.94 E-value=27 Score=36.42 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=9.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 012695 234 TEREKLEKEKCVLEEDLNKFN 254 (458)
Q Consensus 234 ~~l~~L~~~~~~L~~D~~Kf~ 254 (458)
+.+..|+.++-.|+.-+...+
T Consensus 136 rkl~qLr~ek~~lEq~leqeq 156 (552)
T KOG2129|consen 136 RKLKQLRHEKLPLEQLLEQEQ 156 (552)
T ss_pred HHHHHHHhhhccHHHHHHHHH
Confidence 345555544444444444333
No 197
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=89.91 E-value=2.9 Score=34.05 Aligned_cols=62 Identities=13% Similarity=0.238 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
.|++..++.+.......+.+..++....+|+++...+..|...+...+...++++..+.+..
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 34555555566666666677788888999999999999999999999999999999888753
No 198
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=89.88 E-value=10 Score=31.48 Aligned_cols=78 Identities=15% Similarity=0.308 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHh
Q 012695 268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ--TINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLG 345 (458)
Q Consensus 268 e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q--~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~ 345 (458)
...+.....++......+..+.....++...+... ++|+.++...+.-+..|...|......+..+...+....-.+.
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~ 83 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQ 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666664444333 5899999888888888888888888888777776665554443
No 199
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.86 E-value=8.1 Score=36.78 Aligned_cols=35 Identities=0% Similarity=0.017 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
.++++....++++++..+.++..++.++..++..+
T Consensus 135 ~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 135 NGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444454444443
No 200
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.80 E-value=31 Score=36.93 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC------------H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHH
Q 012695 283 EEHKRICEENEEFKKRVKLQTIN------------A------RDVERMRRELQAVERDIADAENARNEWESKTW---DLD 341 (458)
Q Consensus 283 ~el~~l~~E~~~L~~~v~~Q~~S------------~------~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~---~~e 341 (458)
-.+..++.++..|+..+....-+ + ..+.....+...++..++.+...+++++++.. +.+
T Consensus 275 P~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVE 354 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 34556677777777776554221 1 13333344444454555444444444444332 334
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHhc
Q 012695 342 SKLGRKFKELEALSMECNQAMKRL 365 (458)
Q Consensus 342 ~~~~~~~~~lE~~v~~yN~~~~~l 365 (458)
.++.+...+.+..-..|+.++.++
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445566665554
No 201
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=89.38 E-value=27 Score=35.56 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 271 VEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 271 l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
+...+.++...+.+++..+.+.++.+.-.+..-+|..++++...+....+..++.++.+........
T Consensus 116 ~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~ 182 (346)
T PRK10476 116 AASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAAAV 182 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566666677777788888888888888999999999999988888888877776666555443
No 202
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=89.38 E-value=16 Score=38.59 Aligned_cols=69 Identities=10% Similarity=0.286 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHhHH
Q 012695 276 REIGKKVEEHKRICEENEEFKKRVKLQTI--NARDVERMRRELQAVERDIADAENARNEWE---SKTWDLDSKL 344 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~--S~~di~rmn~E~~~L~~~i~~l~~~~~~l~---~~~~~~e~~~ 344 (458)
.+.+.....+.+|+.-++.|++-|...++ ++.+++.+..++..+.+++.+++.-+.... +++|+.|+..
T Consensus 213 ~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~ 286 (424)
T PF03915_consen 213 EESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQK 286 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 44444455566777777888888887766 778889999999999999887777666554 5777777644
No 203
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.26 E-value=0.11 Score=58.52 Aligned_cols=12 Identities=42% Similarity=0.520 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 012695 347 KFKELEALSMEC 358 (458)
Q Consensus 347 ~~~~lE~~v~~y 358 (458)
++..++.+..+|
T Consensus 296 kl~~~E~~~~el 307 (722)
T PF05557_consen 296 KLERLEELEEEL 307 (722)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 204
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.21 E-value=23 Score=34.60 Aligned_cols=115 Identities=19% Similarity=0.316 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ 317 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~ 317 (458)
.|..+...++.+..+.+.-+...+..+..++.++...+.+-...+.....+..++.+|+..... +..+-.+|-.++.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~---~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEM---QEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3444455555555555555566666666666666666665555555566666666666655333 3444555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHH
Q 012695 318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS 355 (458)
Q Consensus 318 ~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v 355 (458)
.++..+..+......-...+..+...+.......+..-
T Consensus 86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 86 EAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555554444444444444444444443333
No 205
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.18 E-value=27 Score=35.39 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRIC 289 (458)
Q Consensus 243 ~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~ 289 (458)
+.....|.++++..+..++.....++-.++.+..+...++++-..+.
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Ln 168 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLN 168 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHH
Confidence 33444455555555555555555555555555444444444444443
No 206
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=88.99 E-value=0.12 Score=59.33 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 012695 203 EKLEKEKENVSEYVEELKKKVSEME 227 (458)
Q Consensus 203 ~kl~~~~~~~~e~~~~L~~e~~eLe 227 (458)
.++...+..+.+.+..+...+..|+
T Consensus 324 KkL~~~L~el~e~le~~~~~~~~Le 348 (859)
T PF01576_consen 324 KKLERKLQELQEQLEEANAKVSSLE 348 (859)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555444444444443
No 207
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.69 E-value=16 Score=39.25 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEK-------MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA 306 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~-------~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~ 306 (458)
....|.++...|+.|+.--.+-+-+++.+... .+.++..++--|+.+.+++-.++.....-.++.+.--+++
T Consensus 339 e~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~p 417 (654)
T KOG4809|consen 339 ENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNP 417 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCh
Confidence 45556666666666665544444444444443 4444444444455555555555555555555544444433
No 208
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.65 E-value=9.2 Score=30.54 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTW 338 (458)
Q Consensus 267 ~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~ 338 (458)
++.+|...-+.+.-.+.+++.++.++..|.. +++.+...++.|......++.....++.++.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~----------e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQ----------EVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444445555555555533 3444555566666666666666666655543
No 209
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=88.63 E-value=0.13 Score=59.01 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
.|+..++.+...++..+..+..|+.+.+.+..++..
T Consensus 353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e 388 (859)
T PF01576_consen 353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAE 388 (859)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444444444444444444444444444444433
No 210
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.55 E-value=29 Score=35.98 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccCCCCCCC--CCCCCCCHHHHHHHHHHHHH
Q 012695 52 ADLYTDRSHQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLIS 101 (458)
Q Consensus 52 pRpl~DK~~q~~~~~~I~~fL~~~~f~~s~--k~l~~PT~KdF~~If~fL~~ 101 (458)
|--+.|++ .+++.|+..|...|+|... ..|++=.+-.-+.|...|..
T Consensus 63 p~e~DDPn---~~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad 111 (359)
T PF10498_consen 63 PQEYDDPN---ATISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLAD 111 (359)
T ss_pred CcccCCHH---HHHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHH
Confidence 55667766 7999999999999988654 44677788888888888876
No 211
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.52 E-value=51 Score=37.62 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHh
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKR 364 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~ 364 (458)
++.-|..-+..+...+..++.....+..++..+|.++......-+.....|..+-..
T Consensus 653 ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~e 709 (769)
T PF05911_consen 653 QLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEE 709 (769)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 444455566666666666777777777777777777666555555555555555333
No 212
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.51 E-value=33 Score=35.52 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 420 QQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 420 ~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
.+++..-...+.+...+.+-|+..+..+++-|+-|
T Consensus 251 ~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y 285 (499)
T COG4372 251 AEQIRERERQLQRLETAQARLEQEVAQLEAYYQAY 285 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566666666666666655554
No 213
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.45 E-value=40 Score=37.61 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
++..+.++++.+...-+..++.++.|-.+++.|.++..
T Consensus 224 e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~ 261 (916)
T KOG0249|consen 224 ELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSL 261 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34444455555554444555555555555555554433
No 214
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.14 E-value=21 Score=33.47 Aligned_cols=86 Identities=20% Similarity=0.314 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCHHHHHHHHHH
Q 012695 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL-QTINARDVERMRRE 315 (458)
Q Consensus 237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~-Q~~S~~di~rmn~E 315 (458)
..++.....|+.++.+...-+..++.+++.....-. -..+-.....+++.++.++++|+..++. ....|+-|+.|+.+
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~-~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~ 143 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE-ESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEE 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344445555555555555444444444444421111 1134455667777888888888887773 24566666666655
Q ss_pred HHHHHHHH
Q 012695 316 LQAVERDI 323 (458)
Q Consensus 316 ~~~L~~~i 323 (458)
...+...+
T Consensus 144 ~~~~~~~a 151 (188)
T PF03962_consen 144 IKIAKEAA 151 (188)
T ss_pred HHHHHHHH
Confidence 55444433
No 215
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.96 E-value=38 Score=35.59 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=11.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHhc
Q 012695 344 LGRKFKELEALSMECNQAMKRL 365 (458)
Q Consensus 344 ~~~~~~~lE~~v~~yN~~~~~l 365 (458)
+....-+.+..-..|+.++.++
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445566666554
No 216
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=87.94 E-value=0.16 Score=57.32 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCHHHHH--HHHHHHHHccCCCC
Q 012695 60 HQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDIT--DVIKFLISQLDYPS 107 (458)
Q Consensus 60 ~q~~~~~~I~~fL~~~~f~~s~k~l~~PT~KdF~--~If~fL~~~iD~~~ 107 (458)
+...+..-|+.|+.. |+.+- ++ -+.-|.. .|+.-+++.|||.+
T Consensus 4 ~~~~l~~~Lv~Wv~t--f~~~~-~~--~~~~dL~DGv~L~evL~qIDp~~ 48 (713)
T PF05622_consen 4 DKMELCDSLVTWVQT--FNLSA-PC--SSYEDLSDGVALAEVLHQIDPEY 48 (713)
T ss_dssp ---HHHHHHHHHHTT-----SS------SHHHHTTSHHHHHHHHHH-TTT
T ss_pred chhhHHHHHHHHHHH--CCCCC-Cc--CCHHHccchHHHHHHHHHhCccc
Confidence 345677888888865 44221 11 1233333 25777888888753
No 217
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=87.67 E-value=1.1 Score=31.69 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 417 ISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 417 ~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
.-|++..+.+..+|++...+++.|+.+...|.+|
T Consensus 8 elLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 8 ELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3678889999999999999999999999999876
No 218
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.51 E-value=39 Score=37.66 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCHHHHHHHH
Q 012695 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF-----KKRVKLQTINARDVERMR 313 (458)
Q Consensus 239 L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L-----~~~v~~Q~~S~~di~rmn 313 (458)
+.+.-..|..-+.++..|++.+...+.+-...+.++..+ ++.+..++..- .-.++...+|-+..+.++
T Consensus 94 ~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q-------ie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr 166 (660)
T KOG4302|consen 94 SDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ-------IEKLCEELGGPEDLPSFLIADESDLSLEKLEELR 166 (660)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCccCCcccccCcccccHHHHHHHH
Confidence 334444777888888888888877776665555555544 45555555443 667889999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012695 314 RELQAVERDIADAENARNEWE 334 (458)
Q Consensus 314 ~E~~~L~~~i~~l~~~~~~l~ 334 (458)
..+..|++....--+....+.
T Consensus 167 ~~L~~L~~ek~~Rlekv~~~~ 187 (660)
T KOG4302|consen 167 EHLNELQKEKSDRLEKVLELK 187 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888877664444443333
No 219
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=87.50 E-value=20 Score=31.80 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV---KLQTINARDVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v---~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
-+...+.....+......++..+..+..+.....+....+ ..+|+++.+.-..+.=+..|...|......+..+...
T Consensus 14 ~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ 93 (146)
T PRK07720 14 KENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQ 93 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444456666666777777777777777777777764 3578999998888888888888887777777766666
Q ss_pred hhHHHhHH---hhHHHHHHHHHHHH
Q 012695 337 TWDLDSKL---GRKFKELEALSMEC 358 (458)
Q Consensus 337 ~~~~e~~~---~~~~~~lE~~v~~y 358 (458)
+...-..+ .+..+.+|.+.+.+
T Consensus 94 ve~~r~~~~ea~~~~k~~ekLker~ 118 (146)
T PRK07720 94 MNRKQQDLTEKNIEVKKYEKMKEKK 118 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433322 33445666666543
No 220
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=87.23 E-value=67 Score=37.57 Aligned_cols=148 Identities=14% Similarity=0.281 Sum_probs=68.4
Q ss_pred HhHHHHHHHHHHH--HHHHHhccCCCChHH------HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Q 012695 210 ENVSEYVEELKKK--VSEMEGAMTGPTERE------KLEKEKCVLEEDLNKFNAII------------GELNMRKEKMEK 269 (458)
Q Consensus 210 ~~~~e~~~~L~~e--~~eLe~l~~~~~~l~------~L~~~~~~L~~D~~Kf~~yi------------~~~~~k~~~~e~ 269 (458)
+.+.+=..+|++. ..-|+++.+-|+..+ .|+.++....+|++-++.-+ ..++.-+....+
T Consensus 1031 ~~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTK 1110 (1439)
T PF12252_consen 1031 QALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITK 1110 (1439)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHH
Confidence 3444434445443 244555555555433 66777777777766655211 122222233333
Q ss_pred HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 270 LVEEKE--------------REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWES 335 (458)
Q Consensus 270 ~l~~l~--------------~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~ 335 (458)
+|..++ ..+.+.++|+.-+..|..++... ..++.=.||+.+...++.+...+..+ -+.++.+
T Consensus 1111 rIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~--~dkVDFSDIEkLE~qLq~~~~kL~dA--yl~eitK 1186 (1439)
T PF12252_consen 1111 RITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSG--TDKVDFSDIEKLEKQLQVIHTKLYDA--YLVEITK 1186 (1439)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccC--CCcccHHHHHHHHHHHHHhhhhhHHH--HHHHHHH
Confidence 333332 22334444444444444444332 23355558887777777766665321 1222223
Q ss_pred HhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695 336 KTWDLDSKLGRKFKELEALSMECNQA 361 (458)
Q Consensus 336 ~~~~~e~~~~~~~~~lE~~v~~yN~~ 361 (458)
.+..+|.+.-+...++-.++..+|..
T Consensus 1187 qIsaLe~e~PKnltdvK~missf~d~ 1212 (1439)
T PF12252_consen 1187 QISALEKEKPKNLTDVKSMISSFNDR 1212 (1439)
T ss_pred HHHHHHhhCCCchhhHHHHHHHHHhh
Confidence 33334433444444555555555443
No 221
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=87.23 E-value=22 Score=31.97 Aligned_cols=39 Identities=28% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHI 444 (458)
Q Consensus 406 ~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~ 444 (458)
+++...+.....++++.|+.+...+.....++..+..+-
T Consensus 100 ~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 100 KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444666666666666666666666665543
No 222
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=87.03 E-value=76 Score=38.02 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695 278 IGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK 349 (458)
Q Consensus 278 l~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~ 349 (458)
++....+++....+++.+..++..-.....-++.++.|...+.+....+...++.++..+-+.+..+.+...
T Consensus 790 ~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~ 861 (1294)
T KOG0962|consen 790 LERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLIN 861 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666665555666677778888888888888888888887777777766665544
No 223
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.73 E-value=52 Score=35.81 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 421 QQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 421 ~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
-+++..+..-.+.-..++.....+....+-|
T Consensus 488 aqve~ak~se~e~l~kle~~~~e~~~~k~al 518 (522)
T PF05701_consen 488 AQVEAAKASEKEILEKLEEAMKEIEERKEAL 518 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 224
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=86.62 E-value=30 Score=32.89 Aligned_cols=97 Identities=21% Similarity=0.275 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
..++.........+...+.............+.|+.+|-.+ .-.-|+.|++|-. + |=+.=+..+....++...+
T Consensus 42 ~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR--K~sWs~~DleRFT-~---Lyr~dH~~e~~e~~ak~~l 115 (207)
T PF05546_consen 42 EELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR--KHSWSPADLERFT-E---LYRNDHENEQAEEEAKEAL 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCChHHHHHHH-H---HHHhhhhhHHHHHHHHHHH
Confidence 33333334444444444455555555555566666666433 1245999999843 2 2222233334444444555
Q ss_pred hHHHhHHhhHHHHHH-HHHHHHHH
Q 012695 338 WDLDSKLGRKFKELE-ALSMECNQ 360 (458)
Q Consensus 338 ~~~e~~~~~~~~~lE-~~v~~yN~ 360 (458)
.+.|....+....|. .++..||.
T Consensus 116 ~~aE~~~e~~~~~L~~~Il~RYHE 139 (207)
T PF05546_consen 116 EEAEEKVEEAFDDLMRAILTRYHE 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554 34566764
No 225
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=86.57 E-value=18 Score=39.68 Aligned_cols=99 Identities=12% Similarity=0.204 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI-NARDVERMRRELQAVERDIADAENARNEWESKTW 338 (458)
Q Consensus 260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~-S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~ 338 (458)
++.+.+.|.+++.++ . .+.+++.+++.+++|+. .+| ++.|+.++..+.++|++++.....++..+.+.+.
T Consensus 173 ~k~~~~~w~~~~~~L----p-~~~~~~~yk~~v~~i~~----~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 173 LKAMQQKWKKRKKDL----P-NKQDLEEYKKRLEAIKK----KDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHhc----C-CchhHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444 2 13334444444444443 133 6888889999999988888877777776666666
Q ss_pred HHHhHHhhHHHHHHHHH-HHHHHHHHhcCC
Q 012695 339 DLDSKLGRKFKELEALS-MECNQAMKRLKL 367 (458)
Q Consensus 339 ~~e~~~~~~~~~lE~~v-~~yN~~~~~l~l 367 (458)
..--.+...+.+++... ++|+.+.....+
T Consensus 244 ~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~ 273 (555)
T TIGR03545 244 NDKKQLKADLAELKKAPQNDLKRLENKYAI 273 (555)
T ss_pred HhHHHHHHHHHHHHhccHhHHHHHHHHhCC
Confidence 55555666677777665 457877776554
No 226
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=86.53 E-value=15 Score=32.65 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCHHHH
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL--QTINARDV 309 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~--Q~~S~~di 309 (458)
..+....-.++..+..++.++...-.++..+..+...+....+. +++|+.-+
T Consensus 44 ~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l 97 (150)
T PF07200_consen 44 EELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDAL 97 (150)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 33333333444444455555555555555555555444443333 45655544
No 227
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=86.47 E-value=44 Score=34.68 Aligned_cols=60 Identities=7% Similarity=0.168 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~ 297 (458)
..+.+...+...+.|-+.-+..+......+...+..+-++....+.+...+..+.+.|+.
T Consensus 120 ~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~ 179 (499)
T COG4372 120 AVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQA 179 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555555555553
No 228
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=86.32 E-value=46 Score=34.75 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 408 SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 408 ~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
++.+-.+-..+|+.++..+...|.+...++..|+.-+...++-
T Consensus 252 Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~ 294 (384)
T PF03148_consen 252 RIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGP 294 (384)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556666777777777777777777777777766655543
No 229
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=86.31 E-value=17 Score=29.83 Aligned_cols=49 Identities=14% Similarity=0.360 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHH
Q 012695 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS 355 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v 355 (458)
++|.+|+..+.+|...++....+...|+....+.--.+...++.+..++
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888888888888887777665555555666665554
No 230
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=86.26 E-value=19 Score=38.13 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=46.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 012695 204 KLEKEKENVSEYVEELKKKVSEMEG------AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR-KEKMEK 269 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~~eLe~------l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k-~~~~e~ 269 (458)
+|....+.+...+..|+.-+++|-. .+-.|..++.+.+++..+..++.+++.|+...+.. +..|+.
T Consensus 210 ~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~ 282 (424)
T PF03915_consen 210 KLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWES 282 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 5666666677777777777777755 23344578888899999999999999999887754 334543
No 231
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=86.17 E-value=22 Score=30.94 Aligned_cols=103 Identities=13% Similarity=0.205 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV---KLQTINARDVERMRRELQAVERDIADAENARN 331 (458)
Q Consensus 255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v---~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~ 331 (458)
.+++--+.........+.....+++.....+..+..........+ ..+|+|+.++...+.=+..|...|......+.
T Consensus 6 ~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~ 85 (141)
T TIGR02473 6 KLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELA 85 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445556666666667777777777777777776654 35789999887777777777777777666666
Q ss_pred HHHHHhhHHHhHH---hhHHHHHHHHHHH
Q 012695 332 EWESKTWDLDSKL---GRKFKELEALSME 357 (458)
Q Consensus 332 ~l~~~~~~~e~~~---~~~~~~lE~~v~~ 357 (458)
.+...+......+ .+..+.+|.+.+.
T Consensus 86 ~~~~~~e~~r~~l~~a~~~~k~lekL~ek 114 (141)
T TIGR02473 86 LLQQEVEAKRERLLEARRELKALEKLKEK 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555544333 3344556666553
No 232
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.11 E-value=11 Score=36.01 Aligned_cols=53 Identities=32% Similarity=0.395 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
++.|......-++.....+..+-+.+.+++.++++....++.++.|+..|...
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433443344455556666666666666666666666666666666443
No 233
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=86.06 E-value=17 Score=31.88 Aligned_cols=23 Identities=13% Similarity=0.318 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012695 309 VERMRRELQAVERDIADAENARN 331 (458)
Q Consensus 309 i~rmn~E~~~L~~~i~~l~~~~~ 331 (458)
+.++..+.+.+...+..++.++.
T Consensus 98 v~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 98 VSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444443443333333
No 234
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=85.95 E-value=37 Score=33.33 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcCCHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-----LQTINARDV 309 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~-----~Q~~S~~di 309 (458)
.+..++++...|..|+..+..-...+..+...+..........-......+..+...+..+-..+. ..+.+..++
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l 125 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDL 125 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 355555556666666666666666666666666555555555555555555555555555555553 345678888
Q ss_pred HHHHHHHHHHHHHH
Q 012695 310 ERMRRELQAVERDI 323 (458)
Q Consensus 310 ~rmn~E~~~L~~~i 323 (458)
.+|..|-+.+=+.+
T Consensus 126 ~~~l~ea~~mL~em 139 (264)
T PF06008_consen 126 QRALAEAQRMLEEM 139 (264)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777766654444
No 235
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.54 E-value=58 Score=35.26 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=17.4
Q ss_pred HhHHHHHHHhcCCCCccccccccCCCCCC
Q 012695 112 EEDLFVVLKSLSCPFKINKSTLRSPNSPH 140 (458)
Q Consensus 112 EeEv~~~lK~L~YP~~IsKS~L~avG~pH 140 (458)
..|+ ..+...+=|+.++=| +++|.|.
T Consensus 204 ~~EL-R~qr~rnq~Le~~ss--S~~g~~~ 229 (654)
T KOG4809|consen 204 SAEL-RNQRARNQPLEINSS--SAKGLGY 229 (654)
T ss_pred HHHH-HHHHhhcchhhhhhh--cccCCCc
Confidence 4555 889999999966544 2456653
No 236
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=85.50 E-value=19 Score=37.85 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=51.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 012695 204 KLEKEKENVSEYVEELKKKVSEMEG------AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR-KEKMEKLVE 272 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~~eLe~------l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k-~~~~e~~l~ 272 (458)
+|...-+.+......|+..++.|-. .+-.|..++...+++...+.++.+++.||..-.-. +..|+..|+
T Consensus 214 kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~ 289 (426)
T smart00806 214 KLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELD 289 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Confidence 5666677777777778888877765 45667789999999999999999999999876532 445554443
No 237
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.48 E-value=28 Score=32.69 Aligned_cols=9 Identities=11% Similarity=0.420 Sum_probs=5.2
Q ss_pred CChHHHHHH
Q 012695 140 HNWPAYLAL 148 (458)
Q Consensus 140 HsWP~~Lg~ 148 (458)
..|.++=.|
T Consensus 10 ~~W~~~E~m 18 (190)
T PF05266_consen 10 PVWKTIESM 18 (190)
T ss_pred chhHHHHHH
Confidence 367766543
No 238
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.02 E-value=83 Score=36.60 Aligned_cols=35 Identities=11% Similarity=0.276 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVS 448 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~ 448 (458)
++....+++|..++..++.....++.+..++..+.
T Consensus 863 q~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~k 897 (1072)
T KOG0979|consen 863 QQYEVREDELRELETKLEKLSEDLERIKDKLSDVK 897 (1072)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHH
Confidence 45555566666666666666666655555554433
No 239
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=84.83 E-value=42 Score=33.05 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (458)
Q Consensus 415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~ 445 (458)
++..-.+.++++++.|..++.+|..|.....
T Consensus 194 ei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444455555555555555554444
No 240
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.82 E-value=55 Score=34.39 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 263 k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
+.....+....++.++.....++...+.+....+..
T Consensus 165 ~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 165 KVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666666666666555555443
No 241
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=84.58 E-value=57 Score=34.36 Aligned_cols=62 Identities=15% Similarity=0.344 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHhH
Q 012695 282 VEEHKRICEENEEFKKRVKLQTI--NARDVERMRRELQAVERDIADAENARNEWE---SKTWDLDSK 343 (458)
Q Consensus 282 ~~el~~l~~E~~~L~~~v~~Q~~--S~~di~rmn~E~~~L~~~i~~l~~~~~~l~---~~~~~~e~~ 343 (458)
.....+++.=++.|++-|...|. ++.+++.+..++..+.+++.+++.-+.... +++|+.|+.
T Consensus 223 ltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~ 289 (426)
T smart00806 223 LTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELD 289 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Confidence 33344455556778888888876 567778888888877777776655444221 455665543
No 242
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=84.56 E-value=50 Score=37.87 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 239 L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
++.=...+..|-.++...+..++....+++++..++++.+...+...++++.+.++|
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566666677776666666666555555554444444444444444444
No 243
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=84.51 E-value=63 Score=34.74 Aligned_cols=25 Identities=8% Similarity=0.234 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Q 012695 316 LQAVERDIADAENARNEWESKTWDL 340 (458)
Q Consensus 316 ~~~L~~~i~~l~~~~~~l~~~~~~~ 340 (458)
+..|...|..+......+.+...++
T Consensus 167 ~~~L~~qi~~L~~~n~~i~~ea~nL 191 (475)
T PRK10361 167 RHTLAHEIRNLQQLNAQMAQEAINL 191 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 244
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=84.47 E-value=45 Score=33.03 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
......++....++...+.|++...+++.+.+++.++++.+|..- .+-.-++..++.++.+.+..+..+.+.+
T Consensus 189 ~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~---~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 189 ETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEM---KGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777778888888888888888888888888888877422 2334455555666666665555554443
No 245
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=84.42 E-value=80 Score=35.87 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q 302 (458)
+++..+..++.....+....+.....++..+...
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~ 270 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQNG 270 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666666666666666666666666666543
No 246
>PF14992 TMCO5: TMCO5 family
Probab=84.01 E-value=20 Score=35.58 Aligned_cols=22 Identities=9% Similarity=0.368 Sum_probs=13.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh
Q 012695 207 KEKENVSEYVEELKKKVSEMEG 228 (458)
Q Consensus 207 ~~~~~~~e~~~~L~~e~~eLe~ 228 (458)
..|....+.++.|+.++.+...
T Consensus 25 ~ki~~~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 25 QKIQEKEGAIQSLEREITKMDH 46 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 4445556667777777776654
No 247
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=83.96 E-value=68 Score=34.73 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695 282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQA 361 (458)
Q Consensus 282 ~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~ 361 (458)
+.+++.+..-...+...++.|.+.=-.+. ...+.+.+.+..++.....++..+..+.-.=..+.+.++.+.....+.
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq---~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQ---DNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555433333 344555555555555555555555554444444555555555555544
Q ss_pred HHhc
Q 012695 362 MKRL 365 (458)
Q Consensus 362 ~~~l 365 (458)
.|.+
T Consensus 430 kR~m 433 (570)
T COG4477 430 KRYM 433 (570)
T ss_pred HHHH
Confidence 4443
No 248
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.82 E-value=20 Score=28.61 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 012695 200 GFIEKLEKEKENVSEYVEELKKKVSEMEG 228 (458)
Q Consensus 200 e~~~kl~~~~~~~~e~~~~L~~e~~eLe~ 228 (458)
++.++|+..+....+.+.-|+-++++|..
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKe 32 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888778888888888887764
No 249
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=83.52 E-value=43 Score=35.19 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 012695 201 FIEKLEKEKENVSEYVEELKKKVSEMEG 228 (458)
Q Consensus 201 ~~~kl~~~~~~~~e~~~~L~~e~~eLe~ 228 (458)
+..++..+.+....+++.-++=++.||+
T Consensus 144 l~~~ld~e~~~~~~e~~~Y~~~l~~Le~ 171 (447)
T KOG2751|consen 144 LLNKLDKEVEDAEDEVDTYKACLQRLEQ 171 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555555554444555554
No 250
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.46 E-value=39 Score=33.39 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=14.6
Q ss_pred HHhhHHHhHHhhHHHHHH---HHHHHHHHHHHh
Q 012695 335 SKTWDLDSKLGRKFKELE---ALSMECNQAMKR 364 (458)
Q Consensus 335 ~~~~~~e~~~~~~~~~lE---~~v~~yN~~~~~ 364 (458)
..+.-+|..+.+....++ .-+..|-.-+.+
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444 444555444444
No 251
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=83.42 E-value=24 Score=29.16 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 248 ~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
.++.-+..|+..+...+......+..++.+++.+...+.....+.+.+..-.
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~ 96 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLK 96 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888899999999999988888888888888887777777766665443
No 252
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.29 E-value=76 Score=34.78 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=25.4
Q ss_pred chhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 389 DYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRI 437 (458)
Q Consensus 389 d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~ 437 (458)
.|...++..|..|.+.. ....+.+.+...+..++....+.+...|...
T Consensus 325 ~~~~~~~~el~~L~~~~-~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 325 EYLDKIKEELAQLDNSE-ESLEALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555443322 2334444556666666666666666666544
No 253
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=83.17 E-value=32 Score=30.40 Aligned_cols=105 Identities=12% Similarity=0.205 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 254 NAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK---LQTINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 254 ~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~---~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
+..++-.+.+.+.....+.....+++.....+..+.....+....+. .+|+|+.+.-..+.=+..|...|......+
T Consensus 8 ~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v 87 (147)
T PRK05689 8 ATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQL 87 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455566666667777777777777777766666443 478999997766666777777776666666
Q ss_pred HHHHHHhhHHHhH---HhhHHHHHHHHHHHH
Q 012695 331 NEWESKTWDLDSK---LGRKFKELEALSMEC 358 (458)
Q Consensus 331 ~~l~~~~~~~e~~---~~~~~~~lE~~v~~y 358 (458)
..+...+...... .....+.+|.+.+.+
T Consensus 88 ~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~ 118 (147)
T PRK05689 88 TQWTQKVDNARKYWQEKKQRLEALETLQERY 118 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555554433322 233555666666543
No 254
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=82.97 E-value=73 Score=34.30 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
.+...+-.|+.|=..+.+. +.....+.|+.+.+++....+++..+..++..+++.+
T Consensus 194 ~keq~~y~~~~KelrdtN~---q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~ 249 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNT---QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKI 249 (596)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4455566666665554333 2222333334444444444444444444444444443
No 255
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=82.92 E-value=45 Score=31.83 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMR 263 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k 263 (458)
...+.+++..+.....++..++..++.-
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i~~e~Ek~ 52 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKIMEEYEKT 52 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344455555555555555555544443
No 256
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=82.24 E-value=58 Score=32.67 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
...+..+...+..++.++...+.++...+.+.++.+.-.+..-+|..+++....+...++..++.+...+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~ 158 (327)
T TIGR02971 89 ARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASR 158 (327)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777778888888888999999999999999999999999999999888887777665544
No 257
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.14 E-value=45 Score=31.36 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRIC--EENEEFKKRVKLQTINARDVERMR 313 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~--~E~~~L~~~v~~Q~~S~~di~rmn 313 (458)
-+.+++++..|..++.||..-+..+..--.+- . + +..-++-++ .-.+.-+..+.+|.|+.+++.--+
T Consensus 28 ~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~--~-------~--KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~ 96 (218)
T KOG1655|consen 28 SDSVEKKISKLDAELCKYKDQIKKTRPGPAQN--A-------L--KQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA 96 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCcchh--H-------H--HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34566666666666666666555543210000 0 0 011111111 122344567788889888876555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHh-HHhhHHHHHHHHHHHHHHHHHhcC
Q 012695 314 RELQAVERDIADAENARNEWESKTWDLDS-KLGRKFKELEALSMECNQAMKRLK 366 (458)
Q Consensus 314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~-~~~~~~~~lE~~v~~yN~~~~~l~ 366 (458)
.-+..-+.++..++....++........+ .+...-++++++++.-+.+-.-|+
T Consensus 97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lg 150 (218)
T KOG1655|consen 97 ESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLG 150 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555556666666655555544333332 233344556666555544443333
No 258
>PLN02939 transferase, transferring glycosyl groups
Probab=81.99 E-value=1.1e+02 Score=35.80 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh----HHhhHHHHH
Q 012695 276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDS----KLGRKFKEL 351 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~----~~~~~~~~l 351 (458)
.|+....+|.-.++..+.-|+..+....=+-+-+-.+..|+.-|+..+..++.+....+..+|.+-. .+-.+++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (977)
T PLN02939 226 KELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENL 305 (977)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHH
Confidence 4444445555555555666666666666666666677778888888888888777766666655321 123345555
Q ss_pred HHHHHHH
Q 012695 352 EALSMEC 358 (458)
Q Consensus 352 E~~v~~y 358 (458)
+.+++.-
T Consensus 306 ~~~~~~~ 312 (977)
T PLN02939 306 QDLLDRA 312 (977)
T ss_pred HHHHHHH
Confidence 5555443
No 259
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.97 E-value=54 Score=32.17 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKV 282 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~ 282 (458)
.+..+...++..+......+..+...+....+++.+++..+....
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444443333
No 260
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.77 E-value=17 Score=33.21 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 271 VEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWES 335 (458)
Q Consensus 271 l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~ 335 (458)
|..+++++.....++..+..+...|... .|.++ |...+..|+..+..++.++..+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~-----~t~~e---l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSE-----PTNEE---LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444332 44333 344566666666666666666665
No 261
>PF13166 AAA_13: AAA domain
Probab=81.65 E-value=96 Score=34.80 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHH
Q 012695 57 DRSHQSSAIRAIN 69 (458)
Q Consensus 57 DK~~q~~~~~~I~ 69 (458)
=|+--+..++.++
T Consensus 28 GKStlsr~l~~~~ 40 (712)
T PF13166_consen 28 GKSTLSRILKSLC 40 (712)
T ss_pred CHHHHHHHHHHHh
Confidence 3454444444443
No 262
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.59 E-value=14 Score=36.00 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCcceEecCCCCCCCcc
Q 012695 349 KELEALSMECNQAMKRLKL-ATEIQYSLNSNGSTPSE 384 (458)
Q Consensus 349 ~~lE~~v~~yN~~~~~l~l-~~d~~~~ln~~~~~~~e 384 (458)
..+|+-++.++..+-.... |..+.+.|.+.++.|+.
T Consensus 92 ~~ie~~l~~l~~~aG~v~V~G~Gl~ITi~d~~~~~~~ 128 (247)
T COG3879 92 AALEDRLEKLRMLAGSVPVTGPGLVITIDDPGYSPNG 128 (247)
T ss_pred HHHHHHHHHHHHHhccCCCcCCcEEEEecCCCCCccc
Confidence 3445555555554433333 66788999887777765
No 263
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=81.52 E-value=49 Score=34.49 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=10.0
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q 012695 209 KENVSEYVEELKKKVSEMEG 228 (458)
Q Consensus 209 ~~~~~e~~~~L~~e~~eLe~ 228 (458)
++.+...++.|..++.++..
T Consensus 263 Ld~i~~rl~~L~~~~~~l~~ 282 (388)
T PF04912_consen 263 LDSIERRLKSLLSELEELAE 282 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555544
No 264
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=81.41 E-value=13 Score=27.82 Aligned_cols=52 Identities=8% Similarity=0.232 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC 358 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~y 358 (458)
+.|+++..+...|...++.+...+..+...+....-+.+|.=+.|..+...|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 3455555555555555555555555555555444445555555565555555
No 265
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=81.29 E-value=42 Score=30.37 Aligned_cols=210 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK 281 (458)
Q Consensus 202 ~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~ 281 (458)
..+|...+..+..=+...+..+...+-.. .+..++.+.++.+.+..|+......++.+...-..+-.... ......
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~---~~~~~i 77 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH---PDAEEI 77 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC---CChHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695 282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQA 361 (458)
Q Consensus 282 ~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~ 361 (458)
...+..+...-..|...+....-.-++.-......+.+.. +..-+...+..+......- ....++..+..+..+
T Consensus 78 ~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~----l~~wl~~~e~~l~~~~~~~--~~~~~~~~l~~~~~~ 151 (213)
T cd00176 78 QERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD----LEQWLEEKEAALASEDLGK--DLESVEELLKKHKEL 151 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCcccCC--CHHHHHHHHHHHHHH
Q ss_pred HHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 362 MKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQ 421 (458)
Q Consensus 362 ~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~ 421 (458)
...+.-....--.++..|.........+-...|...+..+............+....|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~ 211 (213)
T cd00176 152 EEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEE 211 (213)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 266
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=81.17 E-value=42 Score=30.29 Aligned_cols=86 Identities=9% Similarity=0.120 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ---TINARDVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 257 i~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q---~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
.+--....++....+..+..+.+.....|..+.....++...+... |+|+...-.++.=+..|...|+.....+..+
T Consensus 11 ~dl~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~ 90 (148)
T COG2882 11 LDLAKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKL 90 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566667777777888888888888888888887775554 7888887777777888888888777777766
Q ss_pred HHHhhHHHh
Q 012695 334 ESKTWDLDS 342 (458)
Q Consensus 334 ~~~~~~~e~ 342 (458)
...+.+...
T Consensus 91 ~~~ve~~r~ 99 (148)
T COG2882 91 RKQVEQKRE 99 (148)
T ss_pred HHHHHHHHH
Confidence 665555443
No 267
>PRK09343 prefoldin subunit beta; Provisional
Probab=81.16 E-value=28 Score=30.17 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHH
Q 012695 323 IADAENARNEWESKTWDLDSKLGRKFKELEALSM 356 (458)
Q Consensus 323 i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~ 356 (458)
++.++.++..++++...++-.+...-..+..++.
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334433333333333333333333333333
No 268
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=81.02 E-value=33 Score=33.62 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=12.2
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCCCC
Q 012695 20 LYGGNRFGGSR--DSDASFASSRPSS 43 (458)
Q Consensus 20 ~~~~~~~~~~r--~s~~s~~~sr~s~ 43 (458)
|||.+..||.= +++.+|++..+.|
T Consensus 22 ~~~n~~s~~dl~d~e~d~~~s~~~A~ 47 (330)
T KOG2991|consen 22 ASGNRRSFGDLEDDEDDIFGSTTVAP 47 (330)
T ss_pred CCcchhhccCccccccccccCCCCCC
Confidence 34555555543 4455665554444
No 269
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=80.72 E-value=76 Score=33.01 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 242 ~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
....|+..+.|-+......+.-...+...++.++.||+-.-++...-.-||.-|-..+
T Consensus 394 hrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqal 451 (593)
T KOG4807|consen 394 HREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQAL 451 (593)
T ss_pred HHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666655555555555556666666666666666666666666554443
No 270
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=80.57 E-value=12 Score=31.91 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
+-+..++..+..+-..+..++..+....+|-..++.|+..|+..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555666666666666666666666666666666655543
No 271
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=80.50 E-value=37 Score=29.23 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (458)
Q Consensus 415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~ 445 (458)
....+.++++.+++.+..++.++..+...++
T Consensus 94 ~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 94 RIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555556666666666666666555543
No 272
>PRK11519 tyrosine kinase; Provisional
Probab=80.33 E-value=42 Score=37.99 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhh
Q 012695 145 YLALIHWLVQIASY 158 (458)
Q Consensus 145 ~Lg~L~WLv~l~~~ 158 (458)
...++.+|..-+..
T Consensus 207 ~~~~~~~l~~~l~V 220 (719)
T PRK11519 207 TLGMINNLQNNLTV 220 (719)
T ss_pred HHHHHHHHHhcceE
Confidence 44566666654433
No 273
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=80.28 E-value=67 Score=36.81 Aligned_cols=6 Identities=0% Similarity=0.080 Sum_probs=2.6
Q ss_pred hccCCC
Q 012695 72 LSSHSF 77 (458)
Q Consensus 72 L~~~~f 77 (458)
+...|+
T Consensus 348 ~aq~G~ 353 (771)
T TIGR01069 348 MFQSGI 353 (771)
T ss_pred HHHhCC
Confidence 444443
No 274
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=80.27 E-value=1.1e+02 Score=34.47 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012695 260 LNMRKEKMEKLVEEKEREIGKK 281 (458)
Q Consensus 260 ~~~k~~~~e~~l~~l~~el~~~ 281 (458)
......+++..++++..||...
T Consensus 161 ~eer~~kl~~~~qe~naeL~ra 182 (916)
T KOG0249|consen 161 IEERTRKLEEQLEELNAELQRA 182 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555433
No 275
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=80.24 E-value=72 Score=32.48 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294 (458)
Q Consensus 237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~ 294 (458)
+.|+-....|.+.+-.....+-.+.++..+++.-+..+++|-...+.++..+.++..+
T Consensus 102 ~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~E 159 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGE 159 (401)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 4455555666666666666667777777777766666666665555555555554433
No 276
>PRK04325 hypothetical protein; Provisional
Probab=80.09 E-value=13 Score=29.37 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 252 KFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (458)
Q Consensus 252 Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q 302 (458)
.+++-|..++.+..-.+..|+.|...+.+...++..++.+...|..++...
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666667777777777666666666666666666665555443
No 277
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=79.72 E-value=44 Score=29.72 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 276 REIGKKVEEHKRICEENEEFKKRVKLQ--TINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L~~~v~~Q--~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
+.......+++....+...+...+..+ .+|.++......+.......+.......
T Consensus 43 ~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~ 99 (158)
T PF03938_consen 43 EKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQA 99 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555566666666665 7888888888888777776666444333
No 278
>PLN02678 seryl-tRNA synthetase
Probab=79.48 E-value=15 Score=39.17 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 272 EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 272 ~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
-.+..+......+++.+..+++.+-++|..-..+.++++.+..+...|.+.|..++.++.+++++
T Consensus 36 l~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 36 IALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555554423333444444445555555555444444444333
No 279
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=79.39 E-value=51 Score=30.24 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 248 ~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
.++.++..-+...-.-...+.+++..+..++.....++........+++..
T Consensus 63 ~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~ 113 (177)
T PF13870_consen 63 KELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREE 113 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333344444444444444444444454444444444433
No 280
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=79.35 E-value=24 Score=36.03 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
++...|++|-+++++-.....++.+++.+-.......+......++.+....+++
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555544444444444444444444444444444444444444443
No 281
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=79.25 E-value=38 Score=38.43 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 012695 175 MYMYASDSYLNY 186 (458)
Q Consensus 175 ~~~y~~~~Y~~f 186 (458)
+.+-+.++|..+
T Consensus 245 ilN~la~~Yi~~ 256 (726)
T PRK09841 245 ILNSIANNYLQQ 256 (726)
T ss_pred HHHHHHHHHHHH
Confidence 444555555544
No 282
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.21 E-value=17 Score=28.56 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 405 VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 405 i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
...++..++..+.-.++.|+.+.+.+.....+|+.|+.+++.|..++..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777888888889999999999999999999999998888765
No 283
>PRK04406 hypothetical protein; Provisional
Probab=79.15 E-value=20 Score=28.41 Aligned_cols=50 Identities=14% Similarity=0.061 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 404 DVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 404 ~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
.+..++..++..+.-.++.|+.+.+.+.....+|+.|+.+++.|.+++..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888999999999999999999999999999888755
No 284
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=79.13 E-value=1.2e+02 Score=34.57 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 403 DDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 403 ~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
.-+-.+.....+|...|.+-|..-...+.--|.-.+.--.++..+++|+
T Consensus 261 ~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 261 EFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667788888888888888888888888888888899999998
No 285
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=79.13 E-value=1.2e+02 Score=34.35 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 395 KPALESFADDVKRSSVEKLEELISLQQQSSEMAAKI 430 (458)
Q Consensus 395 k~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i 430 (458)
|.-+..|..+|++++.++.+ ...|++..++++..+
T Consensus 694 k~kieal~~qik~~~~~a~~-~~~lkek~e~l~~e~ 728 (762)
T PLN03229 694 KEKIEALEQQIKQKIAEALN-SSELKEKFEELEAEL 728 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cHhHHHHHHHHHHHH
Confidence 45678888888888877663 333444444443333
No 286
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=79.06 E-value=13 Score=28.80 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 405 VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 405 i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
+..++..++..+.-.++.++.+...+.....+|+.|+.+++.|.+++...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777788888888888888888888888888888777654
No 287
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.93 E-value=1.1e+02 Score=33.83 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 195 DNIDKGFIEKLEKEKEN-------VSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKM 267 (458)
Q Consensus 195 e~l~~e~~~kl~~~~~~-------~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~ 267 (458)
+++.+++. +|+...++ +.+++.+..+.|.+|| .-++.-+.+..+-++-++.=---+..++.++-.+
T Consensus 107 ~~yQerLa-RLe~dkesL~LQvsvLteqVeaQgEKIrDLE------~cie~kr~kLnatEEmLQqellsrtsLETqKlDL 179 (861)
T KOG1899|consen 107 PEYQERLA-RLEMDKESLQLQVSVLTEQVEAQGEKIRDLE------TCIEEKRNKLNATEEMLQQELLSRTSLETQKLDL 179 (861)
T ss_pred hHHHHHHH-HHhcchhhheehHHHHHHHHHHhhhhHHHHH------HHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhH
Q 012695 268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRK 347 (458)
Q Consensus 268 e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~ 347 (458)
-..+.+++-.+.+.+.+-.+-+.....-+..++.-+ .--|..|-.|+-+-...+......+..++++..+++.++.+.
T Consensus 180 maevSeLKLkltalEkeq~e~E~K~R~se~l~qevn--~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl 257 (861)
T KOG1899|consen 180 MAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN--QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRL 257 (861)
T ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHH
Q ss_pred HHHHHHHHH
Q 012695 348 FKELEALSM 356 (458)
Q Consensus 348 ~~~lE~~v~ 356 (458)
...+-..+.
T Consensus 258 ~~~lv~~~~ 266 (861)
T KOG1899|consen 258 LRTLVQRLM 266 (861)
T ss_pred HHHHHHHHh
No 288
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.83 E-value=26 Score=38.04 Aligned_cols=7 Identities=29% Similarity=0.211 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012695 215 YVEELKK 221 (458)
Q Consensus 215 ~~~~L~~ 221 (458)
++..++.
T Consensus 93 ~~~~~~~ 99 (525)
T TIGR02231 93 RGDALKA 99 (525)
T ss_pred HHHHHHH
Confidence 3333333
No 289
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=78.81 E-value=30 Score=27.17 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=54.3
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 390 YKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 390 ~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
+-..+-.+|..|-..+.++-..-++....|+..+..-......++..|..|..++..|..++.-
T Consensus 4 LE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 4 LEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456678899999999998888888899999999888888888888888888888888888764
No 290
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=78.78 E-value=13 Score=28.86 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (458)
Q Consensus 255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q 302 (458)
+-|..++.+..-.+..|+.+...+.+...+|..++.+...|..+|...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555566666666666555566666665555555555543
No 291
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=78.72 E-value=96 Score=33.00 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNE 332 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~ 332 (458)
.+.++..++..++.++..++.++.+
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555444444
No 292
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.70 E-value=29 Score=27.04 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 278 IGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 278 l~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
+.-.+.+++.+++++..|...+ ......++.|.+.-+.++.....+++++
T Consensus 20 I~LLQmEieELKEknn~l~~e~----------q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEV----------QNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555554332 2233445555555555555555554443
No 293
>smart00338 BRLZ basic region leucin zipper.
Probab=78.69 E-value=19 Score=27.33 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 408 SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 408 ~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
.+.-+......|+..+..+.....+++.+++.|+.++..|.+++.
T Consensus 20 ~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 20 SRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445788899999999999999999999999999999988763
No 294
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=78.61 E-value=58 Score=30.41 Aligned_cols=44 Identities=18% Similarity=0.043 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCC
Q 012695 316 LQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL 367 (458)
Q Consensus 316 ~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l 367 (458)
+..|.+.++-++.+++.+...+. ..-..+-...+||+.+..+++
T Consensus 79 rs~L~kv~~l~QARidRvK~HiD--------dkia~ePkFle~nQV~GniKl 122 (228)
T PF06721_consen 79 RSALEKVASLYQARIDRVKAHID--------DKIADEPKFLEFNQVKGNIKL 122 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------hhhhcchHHHHHHHhhchHHH
Confidence 55666666666666666655542 222344556667777766654
No 295
>PLN02939 transferase, transferring glycosyl groups
Probab=78.60 E-value=1.4e+02 Score=34.96 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~ 314 (458)
.+..|++++..|++|++-++.-+.... +.++.+-.+++|-.-...-+..++.....-+. +.-++++-.++-.-.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 300 (977)
T PLN02939 227 ELDVLKEENMLLKDDIQFLKAELIEVA----ETEERVFKLEKERSLLDASLRELESKFIVAQE--DVSKLSPLQYDCWWE 300 (977)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhccchhHHHHHH
Confidence 577888999999999988876554432 22333333333333223333333322211111 112344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHH
Q 012695 315 ELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQ 360 (458)
Q Consensus 315 E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~ 360 (458)
..+.|+.-++.+.++.+..- .+-+....+.++++.+|..+.+-|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (977)
T PLN02939 301 KVENLQDLLDRATNQVEKAA-LVLDQNQDLRDKVDKLEASLKEANV 345 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhccchHHHHHHHHHHHHHHHhhH
Confidence 45555555555555444332 2233445667788888888877653
No 296
>PRK02119 hypothetical protein; Provisional
Probab=78.45 E-value=19 Score=28.36 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 404 DVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 404 ~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
.+..|+..++..+.-.++.|+.+...+.....+++.|+.+++.|..++..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567777777888888889999999999999999999999988888765
No 297
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=78.40 E-value=20 Score=32.48 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIAD 325 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~ 325 (458)
.+......++...+.++......++.|+. +..|++.++.+++.|+.....
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~-------~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKK-------SAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCHHHHHHHHHHHHHHHHH
Confidence 33344455555556666666666666655 467888888888888887763
No 298
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.38 E-value=19 Score=36.41 Aligned_cols=27 Identities=11% Similarity=0.385 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEWE 334 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~ 334 (458)
+++++++..+.|+..++.+..++.+..
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554433
No 299
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=78.15 E-value=12 Score=28.80 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 012695 274 KEREIGKKVEEHKRICEENEEFKKRVKLQTI---NARDVERM-RRELQAVERDIADAENARN 331 (458)
Q Consensus 274 l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~---S~~di~rm-n~E~~~L~~~i~~l~~~~~ 331 (458)
+.+|+...+.++..++.++..++..+.+.+| -|++|-.- ......+...++.+...+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777778888888888888888887 33333222 2223444444444444443
No 300
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=78.11 E-value=48 Score=37.40 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=9.1
Q ss_pred HHHHHHHhhcCCHHHHHHHH
Q 012695 294 EFKKRVKLQTINARDVERMR 313 (458)
Q Consensus 294 ~L~~~v~~Q~~S~~di~rmn 313 (458)
+|+..|+.=.+++++.+-+.
T Consensus 90 eL~~Ll~~l~i~~~~l~~L~ 109 (701)
T PF09763_consen 90 ELENLLDTLSIPEEHLEALR 109 (701)
T ss_pred HHHHHHHhcCCCHHHHHHHh
Confidence 33344444445555554444
No 301
>PRK04406 hypothetical protein; Provisional
Probab=78.05 E-value=23 Score=28.14 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 253 f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
+++-+..++.++.-.+..|+.|...+.+...++..++.+...|..++..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566666666666666666666666666666666666666555543
No 302
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.80 E-value=73 Score=31.13 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 012695 418 SLQQQSSEMAAKI 430 (458)
Q Consensus 418 ~l~~~l~~~~~~i 430 (458)
.|+++|..++..|
T Consensus 186 ~lq~QL~~L~~EL 198 (246)
T PF00769_consen 186 RLQEQLKELKSEL 198 (246)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 303
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=77.65 E-value=94 Score=32.35 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH-HHHHHHHHHHHH
Q 012695 281 KVEEHKRICEENEEFKKRVKLQTINARDVERMR-RELQAVERDIAD 325 (458)
Q Consensus 281 ~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn-~E~~~L~~~i~~ 325 (458)
.+.+++.+.+|...|-..-.+-.+| -|+-|+ .-++++++.+++
T Consensus 361 HqRELekLreEKdrLLAEETAATiS--AIEAMKnAhrEEmeRELeK 404 (593)
T KOG4807|consen 361 HQRELEKLREEKDRLLAEETAATIS--AIEAMKNAHREEMERELEK 404 (593)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhH--HHHHHHHHHHHHHHHHHHh
Confidence 4567888888888887776666666 455554 445666666654
No 304
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.56 E-value=26 Score=37.34 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012695 314 RELQAVERDIADAENARNEWE 334 (458)
Q Consensus 314 ~E~~~L~~~i~~l~~~~~~l~ 334 (458)
.++.++.++.+.+..++..++
T Consensus 109 ~~~~~~~~~~~ql~~~~~~~~ 129 (472)
T TIGR03752 109 SETQELTKEIEQLKSERQQLQ 129 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 305
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=77.56 E-value=81 Score=31.54 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=10.7
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHH
Q 012695 129 NKSTLRSPNSPHNWPAYLALIHWLVQ 154 (458)
Q Consensus 129 sKS~L~avG~pHsWP~~Lg~L~WLv~ 154 (458)
.++.+.|+.+. +-|.+=.+..=+++
T Consensus 14 ~~~Yv~aIn~G-~vP~iesa~~~~~e 38 (297)
T PF02841_consen 14 VKSYVDAINSG-SVPCIESAWQAVAE 38 (297)
T ss_dssp HHHHHHHHHTT-S--BHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCCCchHHHHHHHH
Confidence 34444444443 45666555544443
No 306
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=77.54 E-value=64 Score=30.39 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
-...+|+..+|.+...+...+.+...+...++..-+.|..
T Consensus 165 RsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~ 204 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELEN 204 (205)
T ss_pred HHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455788888888888888888888888888877666543
No 307
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=77.52 E-value=1.2e+02 Score=33.37 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012695 310 ERMRRELQAVERDIADAENARNEWESKTWDLD 341 (458)
Q Consensus 310 ~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e 341 (458)
+++..||..-...|+.+..+++.+++.+....
T Consensus 367 ~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 367 EKVEQERNGRLAKLAELNSRLKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666544433
No 308
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=77.45 E-value=1.3e+02 Score=33.73 Aligned_cols=118 Identities=21% Similarity=0.203 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHH
Q 012695 245 VLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ----TINARDVERMRRELQAVE 320 (458)
Q Consensus 245 ~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q----~~S~~di~rmn~E~~~L~ 320 (458)
.|..|..+|+.+-..+.......++.++.+...+..++..++.|.-...+-+..|..- +.-.+-...-+.+.+.|.
T Consensus 216 KlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~ 295 (786)
T PF05483_consen 216 KLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLL 295 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 4667777777777777777666677776666666666666666555444444433321 111222333344445555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHh-------HHhhHHHHHHHHHHHHHHHH
Q 012695 321 RDIADAENARNEWESKTWDLDS-------KLGRKFKELEALSMECNQAM 362 (458)
Q Consensus 321 ~~i~~l~~~~~~l~~~~~~~e~-------~~~~~~~~lE~~v~~yN~~~ 362 (458)
..++.+...+......-..++. .+.....+-+..+.++|..-
T Consensus 296 ~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k 344 (786)
T PF05483_consen 296 QELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAK 344 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5554444443332222222221 12223334456666666653
No 309
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=77.40 E-value=53 Score=29.46 Aligned_cols=94 Identities=27% Similarity=0.272 Sum_probs=49.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 012695 204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR-------KEKMEKLVEEKER 276 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k-------~~~~e~~l~~l~~ 276 (458)
+|+.+..+....-.-|.++.+.|.= .-+.++.| .+.|+....-|+.....++++ ...+..++..++.
T Consensus 11 ~l~~Ek~eHaKTK~lLake~EKLqf---AlgeieiL---~kQl~rek~afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ 84 (153)
T PF15175_consen 11 KLEEEKAEHAKTKALLAKESEKLQF---ALGEIEIL---SKQLEREKLAFEKALGSVKSKVLQESSKKDQLITKCNEIES 84 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH---HHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443333333333345555555542 11223333 334556666677666666654 4445555555555
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhhc
Q 012695 277 EIG--KKVEEHKRICEENEEFKKRVKLQT 303 (458)
Q Consensus 277 el~--~~~~el~~l~~E~~~L~~~v~~Q~ 303 (458)
++. ..+.-+.--+.++.+|+..|..|+
T Consensus 85 ei~c~kqed~LngKe~~I~eLk~~l~sQK 113 (153)
T PF15175_consen 85 EIICHKQEDILNGKENEIKELKQRLASQK 113 (153)
T ss_pred HHHhcchhhhhcccccchHHHHhhhHHHH
Confidence 554 444455555566777777776664
No 310
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.30 E-value=72 Score=30.81 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHI 444 (458)
Q Consensus 415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~ 444 (458)
...+|..++..+..+|.+.+.....+..+.
T Consensus 114 ~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 114 QVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333
No 311
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=77.26 E-value=43 Score=29.45 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (458)
Q Consensus 247 ~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~ 304 (458)
..+.+.|......++..++...+.|+.++.+|...+.....- .|-..|-+.|..++.
T Consensus 73 ~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k-~eyd~La~~I~~~p~ 129 (139)
T PF05615_consen 73 KRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNK-EEYDALAKKINSQPT 129 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCC
Confidence 334555555555555555555555555555554433322222 244555555555544
No 312
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=77.22 E-value=39 Score=27.70 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHK 286 (458)
Q Consensus 237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~ 286 (458)
..++.+...|..|..++..-++..+.+..+|+....++...|....+.++
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777778888888888888888888877777777777666655444443
No 313
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=77.12 E-value=53 Score=29.17 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 012695 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVER 321 (458)
Q Consensus 242 ~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~ 321 (458)
+...|-.|-.+|.+|+..+.. +..+..+.+....+...+...+-.++..+.... .++.....+...|..
T Consensus 8 eL~~Ll~d~~~l~~~v~~l~~--------~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r---~~l~~~~~~~~~L~~ 76 (150)
T PF07200_consen 8 ELQELLSDEEKLDAFVKSLPQ--------VQELQQEREELLAENEELAEQNLSLEPELEELR---SQLQELYEELKELES 76 (150)
T ss_dssp HHHHHHHH-HHHHHHGGGGS----------HHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCHH--------HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH---HHHHHHHHHHHHHHH
Confidence 445577788888888887654 222223333333334444444444444443332 344445555555666
Q ss_pred HHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHH
Q 012695 322 DIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAM 362 (458)
Q Consensus 322 ~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~ 362 (458)
.......+...+ ...+....-+++....+...=...-.++
T Consensus 77 ~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~la 116 (150)
T PF07200_consen 77 EYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEELA 116 (150)
T ss_dssp HHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555555555 4445544433333333333333333333
No 314
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=77.06 E-value=17 Score=32.30 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Q 012695 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDV 309 (458)
Q Consensus 265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di 309 (458)
+++...+++..++.++...+.+.....+++++..+..-|||++|+
T Consensus 31 ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gis~~eL 75 (135)
T PRK10947 31 EKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNEL 75 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 344444444455555555566666677888899999999999998
No 315
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=77.05 E-value=1.2e+02 Score=33.05 Aligned_cols=22 Identities=14% Similarity=0.413 Sum_probs=12.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 012695 205 LEKEKENVSEYVEELKKKVSEM 226 (458)
Q Consensus 205 l~~~~~~~~e~~~~L~~e~~eL 226 (458)
+.-.+....+++..+...+.++
T Consensus 114 lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 114 LKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666655555
No 316
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.95 E-value=1e+02 Score=32.38 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAI-IGELNMRKEKMEKLVEEKEREIG------------------------KKVEEHKRIC 289 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~y-i~~~~~k~~~~e~~l~~l~~el~------------------------~~~~el~~l~ 289 (458)
.++.|+.+...|+.-++.-++| ++.+..++.+++..-.-+++.++ +....+..++
T Consensus 180 ~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~ 259 (552)
T KOG2129|consen 180 TLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQ 259 (552)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHH
Confidence 4677777777777776665554 34555666666555444443332 2344555566
Q ss_pred HHHHHHHHHHHh
Q 012695 290 EENEEFKKRVKL 301 (458)
Q Consensus 290 ~E~~~L~~~v~~ 301 (458)
.|+++|+..+..
T Consensus 260 ~EveRlrt~l~~ 271 (552)
T KOG2129|consen 260 AEVERLRTYLSR 271 (552)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 317
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.91 E-value=14 Score=28.74 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695 272 EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (458)
Q Consensus 272 ~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E 315 (458)
..++.++.+.+.+++.++.++.+|+..|+.-+-|++-|++.-++
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~ 63 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVARE 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34455566666667777777777777777765577777766543
No 318
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.90 E-value=65 Score=30.13 Aligned_cols=105 Identities=26% Similarity=0.325 Sum_probs=50.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 203 EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKV 282 (458)
Q Consensus 203 ~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~ 282 (458)
.++...++.....+..|+..++....-+........+-++...|+..+.++++-+. ....--+..+..++.++....
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~---~~~~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE---KYSENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHH
Confidence 35566666666666666666666543222221222222333333333322222111 111112345555656555555
Q ss_pred HHHHHHHHHHHHHHHHHHh-hcCCHHHHH
Q 012695 283 EEHKRICEENEEFKKRVKL-QTINARDVE 310 (458)
Q Consensus 283 ~el~~l~~E~~~L~~~v~~-Q~~S~~di~ 310 (458)
.....-..-+--|+.=+.. -+++..+++
T Consensus 149 ~~anrwTDNI~~l~~~~~~k~~~~~~~i~ 177 (188)
T PF03962_consen 149 EAANRWTDNIFSLKSYLKKKFGMDEEDIR 177 (188)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCCHHHHH
Confidence 5555555555556555555 466666665
No 319
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=76.83 E-value=1.2e+02 Score=33.00 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC 358 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~y 358 (458)
+.+.+..|++.++..+..++.++..+.-...+.+..+....+.++..+...
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~ 325 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQEL 325 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 478889999999999999999988888888888877777666665555444
No 320
>PRK00736 hypothetical protein; Provisional
Probab=76.66 E-value=22 Score=27.56 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 256 yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
-|..++.+..-.+..|+.+...+.+...+|..++.+...|..++..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666666666666666555544
No 321
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=76.65 E-value=35 Score=33.49 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 315 ELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 315 E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
++..|+.+++.++...-.|-+++.=
T Consensus 108 ~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 108 TISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444
No 322
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=76.53 E-value=88 Score=31.42 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695 282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQA 361 (458)
Q Consensus 282 ~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~ 361 (458)
..++..+..|+..|...++.-+- .-+|+.+|++...-.++.+-...+.-+..-.++|.++.+..++--.+=+..|.-
T Consensus 62 ~~QLn~L~aENt~L~SkLe~EKq---~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d 138 (305)
T PF14915_consen 62 NGQLNVLKAENTMLNSKLEKEKQ---NKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSD 138 (305)
T ss_pred hhhHHHHHHHHHHHhHHHHHhHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcch
Confidence 34555666666666666655443 334555566666555655555555555555666666666665444433333333
Q ss_pred HHhcCCCCcc--------eEecCCCCCCCccc--cccchh--hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 362 MKRLKLATEI--------QYSLNSNGSTPSEV--MGVDYK--STLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAK 429 (458)
Q Consensus 362 ~~~l~l~~d~--------~~~ln~~~~~~~ei--~~~d~k--~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~ 429 (458)
+..++-.+++ +..+|.- -.++ ....++ +-+--.+..-..+......++..-...-+..+.....+
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsL---e~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~K 215 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSL---EIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGK 215 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2222210000 0000000 0000 000111 10111111112222223333333333445555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 430 IEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 430 i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
=+...+++..|+++.-=|.+||+.
T Consensus 216 qes~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888875
No 323
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=76.09 E-value=44 Score=27.69 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~ 304 (458)
+..+...+..+...+.+...=+..+++++..+...+..-..+.-+.......+..|+..|...+..+.-
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~ 73 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSE 73 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444444444444445555555555444444444444444445555555555554444433
No 324
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=76.06 E-value=27 Score=36.93 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 273 EKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 273 ~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
.+.++......+++.++.+++.+.+.|..
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555666555544
No 325
>PRK04325 hypothetical protein; Provisional
Probab=75.87 E-value=24 Score=27.86 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 405 VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 405 i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
...++..++..+.-.++.|+.+...+.....+|+.|+.+++.|..++...
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777778888888888888888888898888888888877653
No 326
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.54 E-value=65 Score=29.39 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHHHHHHHHHhHHH
Q 012695 179 ASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSE 214 (458)
Q Consensus 179 ~~~~Y~~fl~g~d~~~e~l~~e~~~kl~~~~~~~~e 214 (458)
...-|..|=.--|.+..+.-.+++-+++..++.++.
T Consensus 5 A~~Ig~EfE~lId~~G~e~v~~LmP~VV~vLE~Le~ 40 (158)
T PF09744_consen 5 ASSIGKEFERLIDRYGEEAVKGLMPKVVRVLELLES 40 (158)
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence 345556563333333344455566566655554433
No 327
>PRK00295 hypothetical protein; Provisional
Probab=75.52 E-value=24 Score=27.40 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 406 ~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
..++..++..+.-.++.|+.+...+.....+|+.|+.+++.|..++..
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777888888888888888888888888888777754
No 328
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=75.44 E-value=80 Score=30.43 Aligned_cols=48 Identities=19% Similarity=0.073 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695 314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQA 361 (458)
Q Consensus 314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~ 361 (458)
.|.++|+++.+-+-+.+.+++++....|....+....|+....+|+..
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~ 90 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDK 90 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555554555555666666666544
No 329
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=75.40 E-value=20 Score=31.75 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Q 012695 266 KMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDV 309 (458)
Q Consensus 266 ~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di 309 (458)
++...+++.+++.++...+..+..+.+++++..+..-|||++|+
T Consensus 32 kl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~~Git~eeL 75 (134)
T PRK10328 32 KFRVVTKERREEEEQQQRELAERQEKINTWLELMKADGINPEEL 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 33444444445555555556666777888889999999999998
No 330
>PRK11546 zraP zinc resistance protein; Provisional
Probab=75.20 E-value=26 Score=31.39 Aligned_cols=30 Identities=3% Similarity=0.306 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q 012695 295 FKKRVKLQTINARDVERMRRELQAVERDIA 324 (458)
Q Consensus 295 L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~ 324 (458)
|+..+...+-..+.|..+..|+..|...+.
T Consensus 77 LnALl~~~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 77 YNALLTANPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555444
No 331
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=75.20 E-value=45 Score=34.10 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhccCCC------ChHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 214 EYVEELKKKVSEMEGAMTGP------TEREKLEKEKCVLEEDLNKFNAIIG 258 (458)
Q Consensus 214 e~~~~L~~e~~eLe~l~~~~------~~l~~L~~~~~~L~~D~~Kf~~yi~ 258 (458)
..+..+....++|+.+.+.| +...++-++.+.|+.=+.+|.+|..
T Consensus 7 ~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~ 57 (363)
T COG0216 7 EKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKK 57 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666777755555 3455556666666666666665543
No 332
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=74.95 E-value=19 Score=33.88 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 413 LEELISLQQQSSEMAAKIEGKRKRIDALQ 441 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le 441 (458)
.+++..+++|++.++.-+..++.+++.|+
T Consensus 166 ~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 166 REDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666778888888888899998888875
No 333
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=74.94 E-value=73 Score=29.72 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDS 342 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~ 342 (458)
..+.++..-+.|..++..+......+...+...|.
T Consensus 89 QLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~ 123 (182)
T PF15035_consen 89 QLEQARKANEALQEDLQKLTQDWERLRDELEQKEA 123 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777766666665555554
No 334
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=74.84 E-value=38 Score=26.41 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 012695 242 EKCVLEEDL 250 (458)
Q Consensus 242 ~~~~L~~D~ 250 (458)
.+..|+.++
T Consensus 6 ~~~~Lr~rL 14 (69)
T PF14197_consen 6 EIATLRNRL 14 (69)
T ss_pred HHHHHHHHH
Confidence 333333333
No 335
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=74.64 E-value=48 Score=27.45 Aligned_cols=41 Identities=15% Similarity=0.351 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHH
Q 012695 309 VERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353 (458)
Q Consensus 309 i~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~ 353 (458)
.+.|..|...|...+.+-...+.++.+ .|..+.+.+..+|.
T Consensus 54 ~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~Ek 94 (96)
T PF08647_consen 54 KDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNLEK 94 (96)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHhhc
Confidence 334444455554444443333333333 56666666665553
No 336
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=74.60 E-value=11 Score=30.25 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 420 QQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 420 ~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
.+..|..+..+...|.++++|++++.+||++
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6778888899999999999999999999874
No 337
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=74.37 E-value=25 Score=39.15 Aligned_cols=68 Identities=9% Similarity=0.153 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012695 273 EKEREIGKKVEEHKRICEENEEFKKRVKLQTI-N---ARDVERMRRELQAVERDIADAENARNEWESKTWDL 340 (458)
Q Consensus 273 ~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~-S---~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~ 340 (458)
.++++++..+.+++.++.++.+|...+..-.+ + ...+..+..++++++..++.+..+..++.....+.
T Consensus 560 ~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 560 PLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666677777777777777754322 2 22577788888888888888888887777654443
No 338
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=74.28 E-value=39 Score=26.33 Aligned_cols=15 Identities=13% Similarity=0.496 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERD 322 (458)
Q Consensus 308 di~rmn~E~~~L~~~ 322 (458)
++.++..|.+.|.+.
T Consensus 48 e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 48 ENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 339
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=74.26 E-value=22 Score=30.36 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 256 yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
-+..+++.+..+-+.+..++..+....+|-..++.|+..|+..++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666677777777777777777777777777777766
No 340
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=74.26 E-value=1.2e+02 Score=31.87 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 012695 248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAE 327 (458)
Q Consensus 248 ~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~ 327 (458)
.|+.-+...+.+-.-+.+.+|..+.++ .+-...|+..|+++......+|+=|-+ +-+..|..-++..+..|.+++
T Consensus 244 ~e~~~~~~~LqEEr~R~erLEeqlNd~---~elHq~Ei~~LKqeLa~~EEK~~Yqs~--eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 244 REYQFILEALQEERYRYERLEEQLNDL---TELHQNEIYNLKQELASMEEKMAYQSY--ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHH
Confidence 344333333333334444444444433 334456666666666666666555533 233334444555555555555
No 341
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=74.18 E-value=48 Score=27.23 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012695 311 RMRRELQAVERDIADAENARNEWESKTWDLD 341 (458)
Q Consensus 311 rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e 341 (458)
.+....+.++..|+.++..+..+..++.+.+
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555544444444433
No 342
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=74.13 E-value=1.3e+02 Score=34.23 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012695 309 VERMRRELQAVERDIADAENARN 331 (458)
Q Consensus 309 i~rmn~E~~~L~~~i~~l~~~~~ 331 (458)
+..++..+..|++.++.++.+..
T Consensus 341 v~~l~~~~~~L~~~~~~l~~~~~ 363 (726)
T PRK09841 341 YRALLEKRQTLEQERKRLNKRVS 363 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556655555555443
No 343
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.96 E-value=29 Score=27.29 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
+-|..++.+..-.+..|+.+.+.+.+...++..++.+...|..++..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555556666666665555555555555555555555444
No 344
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.58 E-value=1.1e+02 Score=31.01 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695 309 VERMRRELQAVERDIADAENARNEW-ESKTWDLDSKLGRKFKELEALSMECNQA 361 (458)
Q Consensus 309 i~rmn~E~~~L~~~i~~l~~~~~~l-~~~~~~~e~~~~~~~~~lE~~v~~yN~~ 361 (458)
+++|.......++.++.+..+.-.+ .++.|+....+.. +..+.....+||.+
T Consensus 150 l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~~~s-l~~~~g~~~ef~~l 202 (301)
T PF06120_consen 150 LEQMQSKASETQATLNDLTEQRIDLIRQKAAEQAGAYNS-LKGMNGAHAEFNRL 202 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccHHHHHHH
Confidence 3444444555555555544443322 2334554442222 22233344456554
No 345
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=73.27 E-value=9.2 Score=39.72 Aligned_cols=9 Identities=22% Similarity=0.737 Sum_probs=3.8
Q ss_pred CCCCCcccc
Q 012695 378 NGSTPSEVM 386 (458)
Q Consensus 378 ~~~~~~ei~ 386 (458)
.+.+|-.|+
T Consensus 245 ~~~~PR~iI 253 (370)
T PF02994_consen 245 KGQRPRPII 253 (370)
T ss_dssp TSSS--EEE
T ss_pred ccCCcCeEE
Confidence 455566655
No 346
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.16 E-value=82 Score=29.49 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=11.7
Q ss_pred CCCChHHHHHHHHHHHHHHh
Q 012695 138 SPHNWPAYLALIHWLVQIAS 157 (458)
Q Consensus 138 ~pHsWP~~Lg~L~WLv~l~~ 157 (458)
+|.+=--++..-.||-..+.
T Consensus 28 ~p~tR~dVi~L~e~Ld~~L~ 47 (189)
T PF10211_consen 28 APATRQDVIQLQEWLDKMLQ 47 (189)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 34455666666667765544
No 347
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=73.14 E-value=29 Score=26.26 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 410 VEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 410 ~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
.-+...+..|++.++.+.......+.++..|...+..|..+.
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334467888999999999999999999999999999888764
No 348
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.11 E-value=92 Score=30.02 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 197 IDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER 276 (458)
Q Consensus 197 l~~e~~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~ 276 (458)
+|.-+.+-......+..+-.++|-....+++ .|.+-....++.+.++-+.++.-.......++.+...++
T Consensus 31 ~D~f~q~~r~~~~nS~~efar~lS~~~~e~e----------~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~ 100 (246)
T KOG4657|consen 31 IDSFIQSPRRRSMNSLVEFARALSQSQVELE----------NLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQS 100 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 277 EIGKKVEEHKRICEENEEFKKRVKLQ 302 (458)
Q Consensus 277 el~~~~~el~~l~~E~~~L~~~v~~Q 302 (458)
+++.....++.++.|...++.+|..+
T Consensus 101 elEvl~~n~Q~lkeE~dd~keiIs~k 126 (246)
T KOG4657|consen 101 ELEVLRRNLQLLKEEKDDSKEIISQK 126 (246)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
No 349
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.07 E-value=52 Score=32.28 Aligned_cols=55 Identities=27% Similarity=0.262 Sum_probs=37.8
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 391 KSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (458)
Q Consensus 391 k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~ 445 (458)
-..|-|.+.+-|+--+.+..++++|+.+..+++..+...++.++.+.-.|=.|++
T Consensus 77 ~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 77 DSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888888887777777776666666666666665555544443
No 350
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.07 E-value=1.7e+02 Score=33.67 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=8.3
Q ss_pred HHHHhccCCCCCC
Q 012695 68 INAHLSSHSFHIA 80 (458)
Q Consensus 68 I~~fL~~~~f~~s 80 (458)
++.+|...|+++.
T Consensus 349 l~~~maq~G~~vp 361 (782)
T PRK00409 349 LAALMAKSGLPIP 361 (782)
T ss_pred HHHHHHHhCCCcc
Confidence 4567777776643
No 351
>PRK00295 hypothetical protein; Provisional
Probab=72.81 E-value=31 Score=26.78 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 257 i~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
|..++.+..-.+..|+.+...+.+...++..++.+...|..++..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666655555555555555555555443
No 352
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=72.69 E-value=1.1e+02 Score=30.59 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=43.9
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 398 LESFADDV----KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 398 L~~l~~~i----~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
|.+-+.++ +..+..++.+.+.|++-+..++.+..++..+..+|.-+++.++.+|.
T Consensus 249 i~eqkr~~~~q~~~~~ekik~d~~~ldkg~~pL~~k~~el~~q~~~i~~~i~dl~~~y~ 307 (308)
T PF06717_consen 249 INEQKRQYFLQSQEMSEKIKADMATLDKGQYPLNMKVSELNSQQSAISMKIRDLNDAYE 307 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444 33455556789999999999999999999999999999999998864
No 353
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=72.24 E-value=79 Score=32.45 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 273 EKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 273 ~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
.++.++...+.+++..+.+.++.+.-.+..-+|..+++....+....+..++.++.++
T Consensus 110 ~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l 167 (370)
T PRK11578 110 ELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQI 167 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555556666788888777665555554444444333
No 354
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=72.18 E-value=1.5e+02 Score=32.17 Aligned_cols=192 Identities=15% Similarity=0.199 Sum_probs=94.5
Q ss_pred CCCChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 012695 231 TGPTEREKLEKEKCVLEE-----DLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF---------- 295 (458)
Q Consensus 231 ~~~~~l~~L~~~~~~L~~-----D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L---------- 295 (458)
.-|+.+..|+.=...|.. +-.++.+-++.+..+..+....+..+ +|+..+.++..|+.++..+
T Consensus 226 ~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~L--eld~aeeel~~I~e~ie~lYd~lE~EveA 303 (570)
T COG4477 226 ELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQL--ELDEAEEELGLIQEKIESLYDLLEREVEA 303 (570)
T ss_pred hchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665555544433 11233344444444444444444333 2444455555555555444
Q ss_pred -HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH-HHHHHHHHHHHHHHhcCCCCcceE
Q 012695 296 -KKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK-ELEALSMECNQAMKRLKLATEIQY 373 (458)
Q Consensus 296 -~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~-~lE~~v~~yN~~~~~l~l~~d~~~ 373 (458)
+..-..-..-++..++++.....|+..|+.+....- +.+-+....+++. +|+.+...|-.....+..+
T Consensus 304 ~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~-----l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~----- 373 (570)
T COG4477 304 KNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYR-----LAETELGSVRKFEKELKELESVLDEILENIEAQ----- 373 (570)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence 333334456778888888888888888776655432 2222333333332 4444444444444443321
Q ss_pred ecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 374 SLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 374 ~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
. +.|. .|..--+.+........++.+++++.|..+.+.=-+-|..+..+.+++.++..-+.
T Consensus 374 -----~--------~~yS-----~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~me 434 (570)
T COG4477 374 -----E--------VAYS-----ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYME 434 (570)
T ss_pred -----c--------ccHH-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111 12222222233333444555566666666666666666666666666666555443
No 355
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.17 E-value=1.5e+02 Score=31.95 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMR-------KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQT 303 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k-------~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~ 303 (458)
+++.++.+...|...+-+.---++-++.+ -+++..++..+..++.+= .++...+..|..++..|.
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP----NQLKARLDELYEILRMQN 448 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHhhc
Confidence 56666666666666555554444444432 344555555555554433 556666777777777775
No 356
>PRK09343 prefoldin subunit beta; Provisional
Probab=72.06 E-value=65 Score=27.86 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 396 PALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 396 ~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
.....+..++..+..-+..++..|+++. +.++..+..++.+++++-++
T Consensus 67 qd~~e~~~~l~~r~E~ie~~ik~lekq~-------~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 67 VDKTKVEKELKERKELLELRSRTLEKQE-------KKLREKLKELQAKINEMLSK 114 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555444444444444 44444444444444444433
No 357
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.05 E-value=53 Score=35.60 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 319 VERDIADAENARNEWESK 336 (458)
Q Consensus 319 L~~~i~~l~~~~~~l~~~ 336 (458)
....+..+..++.++..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~ 153 (525)
T TIGR02231 136 NGSEIERLLTEDREAERR 153 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 358
>PRK02119 hypothetical protein; Provisional
Probab=72.02 E-value=40 Score=26.57 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 256 yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
-+..++.+..-.+..|+.+...+.+...++..++.+...|..++..
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555555555444443
No 359
>PRK11519 tyrosine kinase; Provisional
Probab=71.79 E-value=1.1e+02 Score=34.64 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012695 311 RMRRELQAVERDIADAENARN 331 (458)
Q Consensus 311 rmn~E~~~L~~~i~~l~~~~~ 331 (458)
.+...+..|++.++.++.+..
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~ 363 (719)
T PRK11519 343 TLLEKRKALEDEKAKLNGRVT 363 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555554444443
No 360
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.69 E-value=62 Score=27.48 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 239 L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
++.....|+.-++..+.-+..+......+...+..+..+.......+..|+.++.++...
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444455444444444444444444444433
No 361
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=71.67 E-value=36 Score=25.46 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q 012695 287 RICEENEEFKKRVKL 301 (458)
Q Consensus 287 ~l~~E~~~L~~~v~~ 301 (458)
..+.|-.+-..+|++
T Consensus 35 ~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 35 AAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333344433
No 362
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=71.57 E-value=1.2e+02 Score=30.57 Aligned_cols=124 Identities=16% Similarity=0.202 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHH-------HHHHHHHHHHhcCCCCcceEecCCCCCCCc
Q 012695 311 RMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA-------LSMECNQAMKRLKLATEIQYSLNSNGSTPS 383 (458)
Q Consensus 311 rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~-------~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ 383 (458)
.|+.+...|....+-+..++...+.+...++..+-+.-++|-. +--+.+..-++++ +++
T Consensus 134 kmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~K---E~e----------- 199 (305)
T PF14915_consen 134 KMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIK---EIE----------- 199 (305)
T ss_pred HhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-----------
Confidence 4666666666666666666666666666666666555444332 2222222222222 111
Q ss_pred cccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 384 EVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 384 ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
+|. .+=.+.|...+. =.+-+.++..+++.+.+=|++||+..-.+...+..-|-.++.++..+...
T Consensus 200 ~m~-qne~~kv~k~~~-Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~ 264 (305)
T PF14915_consen 200 HMY-QNEQDKVNKYIG-KQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKK 264 (305)
T ss_pred HHH-HhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 001 000122222221 23345678888888888899999888888888887777777776554444
No 363
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=71.31 E-value=67 Score=27.69 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 313 RRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 313 n~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
...++.+...++.+..++..+.....+
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e 31 (129)
T cd00584 5 AAQLQVLQQEIEELQQELARLNEAIAE 31 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444444333
No 364
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.25 E-value=1.4e+02 Score=31.35 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 196 NIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKE 275 (458)
Q Consensus 196 ~l~~e~~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~ 275 (458)
.++..|+..++.......+....++.++..|-.+.+.......|+++...-..|-+|+..++-.|+..+..+.+++..-+
T Consensus 96 ~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE 175 (542)
T KOG0993|consen 96 TYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAE 175 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHH
Confidence 45666776677777777777777888888887766665678889988888899999999988888877777766655444
Q ss_pred H
Q 012695 276 R 276 (458)
Q Consensus 276 ~ 276 (458)
.
T Consensus 176 ~ 176 (542)
T KOG0993|consen 176 Q 176 (542)
T ss_pred H
Confidence 3
No 365
>PF14282 FlxA: FlxA-like protein
Probab=70.72 E-value=18 Score=30.61 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 416 LISLQQQSSEMAA----KIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 416 ~~~l~~~l~~~~~----~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+..|+++|..+.. ..+.|...+..|+.++..|++||.
T Consensus 28 i~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 28 IKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 334555555555555555555554
No 366
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=70.48 E-value=97 Score=29.23 Aligned_cols=33 Identities=3% Similarity=0.132 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 420 QQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 420 ~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+..+..+...+++....+.....++..+...|+
T Consensus 164 ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 164 ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 367
>PRK00736 hypothetical protein; Provisional
Probab=70.48 E-value=37 Score=26.34 Aligned_cols=47 Identities=6% Similarity=0.173 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 407 RSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 407 ~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
.++..++..+.-.++.|+.+...+.....+|+.|+.+++.|..++..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777888888888888888888888888888877765
No 368
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=70.47 E-value=2.4e+02 Score=33.64 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 419 LQQQSSEMAAKIEGKRKRIDALQFHINEVSA 449 (458)
Q Consensus 419 l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~ 449 (458)
++..+..+...+.+....+..+..++..++.
T Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 857 (1047)
T PRK10246 827 IQQELAQLAQQLRENTTRQGEIRQQLKQDAD 857 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444433
No 369
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=70.45 E-value=65 Score=27.20 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 312 MRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 312 mn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
.-.+.+.++..+..+..++..++..
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~ 32 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQ 32 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 370
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=70.27 E-value=63 Score=26.98 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 257 i~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
+..++.+++.++..+..+...+.....++..++.++.++
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544
No 371
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=70.09 E-value=2.1e+02 Score=32.88 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 012695 291 ENEEFKKRV 299 (458)
Q Consensus 291 E~~~L~~~v 299 (458)
+.+.+-..+
T Consensus 580 ~~~~~i~~l 588 (771)
T TIGR01069 580 EVESIIREL 588 (771)
T ss_pred HHHHHHHHH
Confidence 333333333
No 372
>PRK00846 hypothetical protein; Provisional
Probab=70.09 E-value=42 Score=26.84 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 254 NAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 254 ~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
++.|..++.+..-.+..|+.+...+.+....+..++.....|..++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555444444444444444444433
No 373
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=69.99 E-value=82 Score=33.90 Aligned_cols=82 Identities=11% Similarity=0.132 Sum_probs=48.3
Q ss_pred HHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 209 KENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI 288 (458)
Q Consensus 209 ~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l 288 (458)
++....++..+.+++..|.. .+..++++.+.+.-.++-+...+..+...-..+...+.+++.....+...+.+.
T Consensus 221 l~~kt~el~~q~Ee~skLls------ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Ea 294 (596)
T KOG4360|consen 221 LQSKTKELSRQQEENSKLLS------QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEA 294 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555553 456666666666666666666555555555566666666666666666666666
Q ss_pred HHHHHHHH
Q 012695 289 CEENEEFK 296 (458)
Q Consensus 289 ~~E~~~L~ 296 (458)
+.|++.|+
T Consensus 295 eeELk~lr 302 (596)
T KOG4360|consen 295 EEELKCLR 302 (596)
T ss_pred HHHHHhhc
Confidence 66666663
No 374
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=69.98 E-value=1.6e+02 Score=31.37 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhc
Q 012695 308 DVERMRRELQAVERDIADAENARNE---WESKTWDLDSKLGRKFKELEALSMECNQAMKRL 365 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~---l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l 365 (458)
|++..+.....|.+.+..++.+... .+....+++.++.-.-.-.+.++..|-.+....
T Consensus 343 ~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 343 ELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777777666653 334445555555555555556666665554444
No 375
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.68 E-value=1.3e+02 Score=30.40 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 311 RMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 311 rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
....+.+.++..++.+..+++.+...+
T Consensus 137 eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 137 EKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666555554
No 376
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=69.61 E-value=52 Score=32.53 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 275 EREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNE 332 (458)
Q Consensus 275 ~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~ 332 (458)
+.++...+.+++.++.+.++++...+....|..+++....+++.++..+..++.++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~ 127 (322)
T TIGR01730 70 LAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLAS 127 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666667777777778888888887777777766666555444433
No 377
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=69.48 E-value=20 Score=38.89 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
+-+|+.+.+.|++|+.++.. +++++++.|...+.||.+.+-++++.+...++|
T Consensus 95 L~ele~krqel~seI~~~n~-------kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINT-------KIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 33445556667777754444 444444444444444444444444444444444
No 378
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=69.48 E-value=1e+02 Score=29.14 Aligned_cols=12 Identities=8% Similarity=0.426 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q 012695 396 PALESFADDVKR 407 (458)
Q Consensus 396 ~~L~~l~~~i~~ 407 (458)
..|..+..-|..
T Consensus 165 ~~~er~e~ki~~ 176 (221)
T PF04012_consen 165 DSFERMEEKIEE 176 (221)
T ss_pred HHHHHHHHHHHH
Confidence 346666666544
No 379
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.37 E-value=76 Score=29.47 Aligned_cols=12 Identities=0% Similarity=0.246 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHH
Q 012695 142 WPAYLALIHWLV 153 (458)
Q Consensus 142 WP~~Lg~L~WLv 153 (458)
|+.++..+.+++
T Consensus 47 ~~~~~~~~~~~~ 58 (192)
T PF05529_consen 47 FKTVFKILLAIL 58 (192)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 380
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.28 E-value=48 Score=25.25 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHK 286 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~ 286 (458)
+...+.|++.-.-..+.+....+.+...+..++.....+++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555555555555444444433333
No 381
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=69.14 E-value=1.1e+02 Score=29.35 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAEN 328 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~ 328 (458)
..++...........+.+.++. ..+..++.++++++...+..+.+++....
T Consensus 121 ~~l~KaK~~Y~~~c~~~e~~~~--~~~~~~~ke~eK~~~k~~k~~~~~~~~~~ 171 (236)
T cd07651 121 KYLEKAREKYEADCSKINSYTL--QSQLTWGKELEKNNAKLNKAQSSINSSRR 171 (236)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH--HHcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544 23456778888887777777665554333
No 382
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=69.11 E-value=54 Score=26.40 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (458)
Q Consensus 260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q 302 (458)
+..++..++..|..+-..++..+.+...+..|++-|+.-|.+.
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666667777777777777766654
No 383
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=68.87 E-value=1.6e+02 Score=31.12 Aligned_cols=17 Identities=29% Similarity=0.810 Sum_probs=12.0
Q ss_pred CChHHHHHHHHHHHHHHh
Q 012695 140 HNWPAYLALIHWLVQIAS 157 (458)
Q Consensus 140 HsWP~~Lg~L~WLv~l~~ 157 (458)
||| ++=-.+.||++-+.
T Consensus 133 ~nW-T~e~tvqWLi~~Ve 149 (575)
T KOG4403|consen 133 HNW-TNERTVQWLINDVE 149 (575)
T ss_pred hcc-hHHHHHHHHHHhcc
Confidence 788 45567788887654
No 384
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=68.84 E-value=59 Score=26.39 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695 288 ICEENEEFKKRVKLQTINARDVERMRRE 315 (458)
Q Consensus 288 l~~E~~~L~~~v~~Q~~S~~di~rmn~E 315 (458)
.+.|+.+.-..|..-++|++++--+.+-
T Consensus 32 ~E~EN~EIv~~VR~~~mtp~eL~~~L~~ 59 (83)
T PF14193_consen 32 TEAENLEIVQMVRSMKMTPEELAAFLRA 59 (83)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3467788889999999999998776543
No 385
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=68.79 E-value=31 Score=26.05 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 252 KFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRIC 289 (458)
Q Consensus 252 Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~ 289 (458)
+-..|+..++.+...++.....+..++.....++..+.
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444444443333333
No 386
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.77 E-value=56 Score=34.93 Aligned_cols=25 Identities=4% Similarity=0.291 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 312 MRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 312 mn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
+..++++|+.++..+...+..++.+
T Consensus 114 ~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 114 LTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 387
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=68.77 E-value=40 Score=31.34 Aligned_cols=28 Identities=7% Similarity=0.370 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 012695 292 NEEFKKRVKLQTINARDVERMRRELQAVERD 322 (458)
Q Consensus 292 ~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~ 322 (458)
...++..+...+ .+|..++.+++.+...
T Consensus 151 ~~~l~~~l~~~~---g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 151 VDELQSILAGEN---GDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHTT-----HHHHHHHHHHHTGG
T ss_pred HHHHHHHHhccc---CCHHHHHHHHHHHHHH
Confidence 344444444443 3444444444444433
No 388
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=68.77 E-value=78 Score=27.47 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 307 RDVERMRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
..+.++-.+.+.|+..+..+..++..++..+.+
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E 38 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKE 38 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777776666666555544444
No 389
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=68.64 E-value=10 Score=38.56 Aligned_cols=62 Identities=6% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
.+.++..+|+.-+.-+..-+..+..++..+...|..+...+.....++..+...+..++..|
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl 93 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSL 93 (326)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444444444444444444443
No 390
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=68.52 E-value=4.5 Score=43.25 Aligned_cols=55 Identities=15% Similarity=0.375 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCC
Q 012695 306 ARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNS 377 (458)
Q Consensus 306 ~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~ 377 (458)
.+|++.++ ++++|+++|++++++++++..++.. +|. +++..+|+++.||+..++.
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k-----------~e~-----~s~~d~lk~~~DfRt~~Ds 78 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK-----------VEK-----HSAGDNLKFGGDFRTRYDS 78 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhcccccccch-----------hhH-----hhhcCcEEEeeEEEEEEec
Confidence 45666665 7777777777777766644444333 222 5667788888888877654
No 391
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.42 E-value=1.8e+02 Score=31.37 Aligned_cols=19 Identities=5% Similarity=0.051 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhCCCC
Q 012695 174 SMYMYASDSYLNYIEGKDG 192 (458)
Q Consensus 174 ~~~~y~~~~Y~~fl~g~d~ 192 (458)
.+-+....|+..|+...++
T Consensus 267 ~~~~~~q~~~~~~~~n~~~ 285 (508)
T KOG3091|consen 267 SLNDQVQKTLKEWLLNTPK 285 (508)
T ss_pred hHHHHHHHHHHHHhhcCCc
Confidence 4556777889999877664
No 392
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=68.40 E-value=1.7e+02 Score=31.08 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 012695 274 KEREIGKKVEEHKRICEENEEFKKRV-KLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDS 342 (458)
Q Consensus 274 l~~el~~~~~el~~l~~E~~~L~~~v-~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~ 342 (458)
..+.+++.+.||+.-..+...-...+ ..|.++.-+++.+.+++..|++.|.+....+.+....+-+-|.
T Consensus 505 i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~ 574 (583)
T KOG3809|consen 505 INEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGRILNNEK 574 (583)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33444444444443333332222222 2377888899999999999999999888888877777665444
No 393
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=68.36 E-value=6.3 Score=39.95 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHh
Q 012695 317 QAVERDIADAENARNEWESKTWDLDS 342 (458)
Q Consensus 317 ~~L~~~i~~l~~~~~~l~~~~~~~e~ 342 (458)
.-|+.++....-.+..+++++..+|.
T Consensus 129 sNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 129 SNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 33333333333334444444444343
No 394
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=68.14 E-value=70 Score=26.68 Aligned_cols=92 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 012695 203 EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDL-NKFNAIIGELNMRKEKMEKLVEEKEREIG-K 280 (458)
Q Consensus 203 ~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~-~Kf~~yi~~~~~k~~~~e~~l~~l~~el~-~ 280 (458)
.+|...+..+.......+..+..++ .....+.........++ .-|..++..++.+...+-..|.....+.. .
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~------~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~ 76 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLI------SIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKV 76 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012695 281 KVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 281 ~~~el~~l~~E~~~L~~~v~ 300 (458)
....+..++.....|...++
T Consensus 77 l~~q~~~l~~~l~~l~~~~~ 96 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 395
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=67.80 E-value=25 Score=37.03 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCC-CCCCCCCCCCHHHHHHHHHHHHHccC--CCC-CcchHhHHHHHHHhcCCCCcccc
Q 012695 55 YTDRSHQSSAIRAINAHLSSHSFH-IAFPLKQVPSVKDITDVIKFLISQLD--YPS-TTKFEEDLFVVLKSLSCPFKINK 130 (458)
Q Consensus 55 l~DK~~q~~~~~~I~~fL~~~~f~-~s~k~l~~PT~KdF~~If~fL~~~iD--~~~-~~k~EeEv~~~lK~L~YP~~IsK 130 (458)
..|+....-.+.++-.|+..+... +-+++ . +.+...| +.. ..-.-.+++..|+.|||=++=-+
T Consensus 79 y~~~~l~~~~~k~l~~y~k~~~~l~i~idP----~---------l~~~~~~~~~~~~~~~~n~~~i~~l~~lG~k~~g~t 145 (418)
T COG2348 79 YSNQELLDYFIKELKKYAKSKRALFIKIDP----Y---------LVYQQFDLGGEIIENYNNLAIIKLLKDLGYKHSGFT 145 (418)
T ss_pred ccchHHHHHHHHHHHHHHhhccceEEEecc----c---------hhhhcccCCCccccCcchHHHHHHHHHhhhhhcCcc
Confidence 477888899999999999887643 33332 1 1111121 211 12233789999999999996555
Q ss_pred ccccCCCCCCChHHHHHHHHHHHH
Q 012695 131 STLRSPNSPHNWPAYLALIHWLVQ 154 (458)
Q Consensus 131 S~L~avG~pHsWP~~Lg~L~WLv~ 154 (458)
..+...+-| -|+.+|.+=.-.-+
T Consensus 146 ~~~~~~iqp-~~~~~ldl~d~~ed 168 (418)
T COG2348 146 KGLDDSIQP-RWHSVLDLKDKTED 168 (418)
T ss_pred cccCccccc-chhhhccccccChh
Confidence 556665555 79998877655555
No 396
>PHA01750 hypothetical protein
Probab=67.70 E-value=55 Score=25.25 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 398 LESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 398 L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+.++.-.|++....+-+|. .+.+++++...|++.+-..+.|+.++.+++..++
T Consensus 21 IiqlYlKIKq~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 21 IIQLYLKIKQALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4455555555444443332 3445666666666666666667777777766654
No 397
>PRK00846 hypothetical protein; Provisional
Probab=67.69 E-value=49 Score=26.45 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 404 DVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 404 ~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
.+..++..++..+.-.++.|+.+...+......++.|+.+++.|..++...
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677777777777788888888888888888888888888888877654
No 398
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=67.68 E-value=63 Score=25.94 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFN 254 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~ 254 (458)
++.++.++..+..+...+.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k 24 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYK 24 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 399
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.61 E-value=1.1e+02 Score=29.60 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=21.9
Q ss_pred CcchHhHHHHHHHh--cCCCCccccccccCCCC
Q 012695 108 TTKFEEDLFVVLKS--LSCPFKINKSTLRSPNS 138 (458)
Q Consensus 108 ~~k~EeEv~~~lK~--L~YP~~IsKS~L~avG~ 138 (458)
|.+-.+-|...|.. ||--|.|+=|++.+...
T Consensus 15 GAsDvE~iSkalQr~aLG~eYnITisSIiPTT~ 47 (290)
T COG4026 15 GASDVEVISKALQRLALGSEYNITISSIIPTTN 47 (290)
T ss_pred ccchHHHHHHHHHHhhhcccceeEEEeeccCch
Confidence 55555667777764 58889999899876443
No 400
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.60 E-value=1.7e+02 Score=31.02 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 424 SEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 424 ~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
......+.+.+.++..++.+++..+.++..
T Consensus 287 ~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 287 AKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355666666677777777777776666654
No 401
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.47 E-value=60 Score=25.61 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 012695 212 VSEYVEELKKKVSE 225 (458)
Q Consensus 212 ~~e~~~~L~~e~~e 225 (458)
-+++|..|.++-+.
T Consensus 10 KDe~Ia~L~eEGek 23 (74)
T PF12329_consen 10 KDEQIAQLMEEGEK 23 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 402
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.09 E-value=2e+02 Score=31.47 Aligned_cols=40 Identities=15% Similarity=0.354 Sum_probs=21.3
Q ss_pred hcCCCCccccccccCC--CCCCChHHHHHHHHHHHHHHhhhh
Q 012695 121 SLSCPFKINKSTLRSP--NSPHNWPAYLALIHWLVQIASYNY 160 (458)
Q Consensus 121 ~L~YP~~IsKS~L~av--G~pHsWP~~Lg~L~WLv~l~~~~~ 160 (458)
.+|||-.+-+-.+... -..|.=.-.+.++.|+-++.++..
T Consensus 396 ~~~cP~~L~Rd~~~~Lry~~~heaGvh~v~~S~i~El~~~L~ 437 (741)
T KOG4460|consen 396 DFSCPVKLHRDPKCPLRYHCTHEAGVHSVGLSWIHELHKFLG 437 (741)
T ss_pred cCCCCchhhhcccccccchhhhccceEeehhhhHHHHHHHhc
Confidence 4566654443332211 122444445667788888887654
No 403
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=66.97 E-value=86 Score=27.24 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKE 265 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~ 265 (458)
.|..+...+..++.-|+..+..+-.-..
T Consensus 24 ~Lk~ec~~F~~ki~~F~~iv~~~~~~~~ 51 (120)
T PF14931_consen 24 ELKEECKEFVEKISEFQKIVKGFIEILD 51 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554444443333
No 404
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=66.92 E-value=1.1e+02 Score=28.69 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=59.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhc-----cCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 204 KLEKEKENVSEYVEELKKKVSEMEGA-----MTGP-TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKERE 277 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~~eLe~l-----~~~~-~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~e 277 (458)
+|...++.+......|+..+++++.. .+.. ++.-.+-++++.++.-+.+....+.+++.-....+..-.
T Consensus 31 ~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~----- 105 (191)
T PTZ00446 31 KNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHL----- 105 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 56666666666666677766665541 1111 111122244444555555555444444443333322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 278 IGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 278 l~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
...=+..++.-...|+..- .++++++|+++.-++++....-+.+...+
T Consensus 106 ---~~ev~~aLk~g~~aLK~~~--k~~~idkVd~lmDei~E~~e~~~EIseaL 153 (191)
T PTZ00446 106 ---HKIAVNALSYAANTHKKLN--NEINTQKVEKIIDTIQENKDIQEEINQAL 153 (191)
T ss_pred ---HHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122344444555555443 56889999998877776555444444444
No 405
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.91 E-value=1.3e+02 Score=29.38 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAE 327 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~ 327 (458)
|-+++..|+..++..++.+.
T Consensus 178 dr~~~~~ev~~~e~kve~a~ 197 (243)
T cd07666 178 DRDLLKEEIEKLEDKVECAN 197 (243)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 406
>PF13514 AAA_27: AAA domain
Probab=66.73 E-value=2.8e+02 Score=33.15 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hh----cCCHHHHHHHHHHHHHHH
Q 012695 267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK----LQ----TINARDVERMRRELQAVE 320 (458)
Q Consensus 267 ~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~----~Q----~~S~~di~rmn~E~~~L~ 320 (458)
++..+...+.+++..+.++..++.+....+.... .- .+++..+...-.....+.
T Consensus 678 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~ 739 (1111)
T PF13514_consen 678 LEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELR 739 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555444444433 33 346777766554444443
No 407
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=66.70 E-value=1.7e+02 Score=30.70 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 307 RDVERMRRELQAVERDIADAENARN 331 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~ 331 (458)
.++-+...++-++...|.++..+..
T Consensus 83 ~~~~~~en~~~r~~~eir~~~~q~~ 107 (459)
T KOG0288|consen 83 VDVLIAENLRIRSLNEIRELREQKA 107 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444444433
No 408
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=66.62 E-value=35 Score=37.94 Aligned_cols=96 Identities=6% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCCC--CcchHhHHHHHHHhcCCCCc--cccccccC-CCCCCChHHHHHHHHHHHHHHhhhhhhhc
Q 012695 90 KDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPFK--INKSTLRS-PNSPHNWPAYLALIHWLVQIASYNYHLTT 164 (458)
Q Consensus 90 KdF~~If~fL~~~iD~~~--~~k~EeEv~~~lK~L~YP~~--IsKS~L~a-vG~pHsWP~~Lg~L~WLv~l~~~~~~~~~ 164 (458)
..|..-+..|..-.+.++ -..+-.+|..+++.||+++. ..-..+.. ...+...+---..|.||..+..-......
T Consensus 145 ~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~ 224 (619)
T PF03999_consen 145 EELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKE 224 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444444544444444 46678899999999999995 22222222 12344566666777888777654432221
Q ss_pred CCcccccchHHHHHHHHHHHHHHhCC
Q 012695 165 NSKAFVENNSMYMYASDSYLNYIEGK 190 (458)
Q Consensus 165 ~~~~~~~~~~~~~y~~~~Y~~fl~g~ 190 (458)
.-. ..+-++..++...|-.-+
T Consensus 225 ~r~-----~~~~~l~~~i~~LW~~L~ 245 (619)
T PF03999_consen 225 ERE-----EKLQELREKIEELWNRLD 245 (619)
T ss_dssp --------------------------
T ss_pred HHH-----HHHHHHHHHHHHHHHHhC
Confidence 111 234456677777774443
No 409
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=66.57 E-value=63 Score=25.59 Aligned_cols=55 Identities=7% Similarity=0.100 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 012695 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDS 342 (458)
Q Consensus 286 ~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~ 342 (458)
=.++-.+--|...+. ..+++.++.+..+--.|+-.+..+...+.+.++.+.+.+.
T Consensus 17 F~LKLrI~fLee~l~--~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 17 FNLKLRIYFLEERLQ--KLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred hhHHHHHHHHHHHHH--hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444 4455666666666666666666666666666666555444
No 410
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.47 E-value=1.5e+02 Score=32.09 Aligned_cols=92 Identities=11% Similarity=0.192 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH----HHHHH
Q 012695 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI----ADAEN 328 (458)
Q Consensus 253 f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i----~~l~~ 328 (458)
|..-|..+-.+++..+.+......|.++....+...+++++.+... +...+..+..|++++ ...+.
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ee----------L~~a~~~i~~LqDEL~TTr~NYE~ 487 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEE----------LKEANQNISRLQDELETTRRNYEE 487 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3334444444444444444444455544444444444444444332 333333333333333 45677
Q ss_pred HHHHHHHHhhHHHhHHhhHHHHHHHH
Q 012695 329 ARNEWESKTWDLDSKLGRKFKELEAL 354 (458)
Q Consensus 329 ~~~~l~~~~~~~e~~~~~~~~~lE~~ 354 (458)
++..+.+.+..+.-.++..-++|+.+
T Consensus 488 QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 488 QLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888777755
No 411
>PRK10869 recombination and repair protein; Provisional
Probab=66.38 E-value=2.1e+02 Score=31.46 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 347 KFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEM 426 (458)
Q Consensus 347 ~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~ 426 (458)
.+++++.-+..+|.+.+|.|. ++++|+ .|+..++..|..+.+ .......++.+...+.+.+...
T Consensus 297 ~l~~ie~Rl~~l~~L~rKyg~-------------~~~~~~--~~~~~l~~eL~~L~~-~e~~l~~Le~e~~~l~~~l~~~ 360 (553)
T PRK10869 297 RLAELEQRLSKQISLARKHHV-------------SPEELP--QHHQQLLEEQQQLDD-QEDDLETLALAVEKHHQQALET 360 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-------------CHHHHH--HHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888998888663 244433 334444444443322 2223444455666666667777
Q ss_pred HHHHHHHHHH-HHHHHHHHHH
Q 012695 427 AAKIEGKRKR-IDALQFHINE 446 (458)
Q Consensus 427 ~~~i~~k~~e-~~~Le~~~~~ 446 (458)
.+.+..+|.. ...|+..+.+
T Consensus 361 A~~LS~~R~~aA~~l~~~v~~ 381 (553)
T PRK10869 361 AQKLHQSRQRYAKELAQLITE 381 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 7777766665 3445554443
No 412
>PLN02320 seryl-tRNA synthetase
Probab=66.31 E-value=36 Score=36.81 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 284 EHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWE 334 (458)
Q Consensus 284 el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~ 334 (458)
+++.++.+++.+-+.|.. +...++++.+..+...|.+.+..++.++.+++
T Consensus 108 ~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~ 157 (502)
T PLN02320 108 EVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLT 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433 22233444454455555554444444444433
No 413
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=66.25 E-value=78 Score=26.54 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=37.0
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 341 DSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQ 420 (458)
Q Consensus 341 e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~ 420 (458)
|..+..++++|+.++.+=.......+ .+ -.+.....+|.+++ +..+-|.+..-.+.+..+......+...|.
T Consensus 29 Er~v~~kLneLd~Li~eA~~r~~~~~--~~--~~~~~~~l~P~~~i----~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~ 100 (109)
T PF03980_consen 29 ERDVVEKLNELDKLIEEAKERKNSGE--RE--KPVWRHSLTPEEDI----RAHLAPYKKKEREQLNARLQELEEENEALA 100 (109)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHhccc--cC--CCCCCCCCChHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899988887554333211 11 12222334554443 444455554444444444444444444444
Q ss_pred HHH
Q 012695 421 QQS 423 (458)
Q Consensus 421 ~~l 423 (458)
++|
T Consensus 101 ~~i 103 (109)
T PF03980_consen 101 EEI 103 (109)
T ss_pred HHH
Confidence 333
No 414
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=66.22 E-value=1.2e+02 Score=28.52 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGE-LNMRKEKMEKLVEEK 274 (458)
Q Consensus 246 L~~D~~Kf~~yi~~-~~~k~~~~e~~l~~l 274 (458)
|...=++|-.|... |......+.++|.++
T Consensus 91 larEWQrFGryta~vmr~eV~~Y~~KL~eL 120 (195)
T PF10226_consen 91 LAREWQRFGRYTASVMRQEVAQYQQKLKEL 120 (195)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444322 233344444444433
No 415
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.15 E-value=2e+02 Score=32.52 Aligned_cols=128 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 200 GFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG 279 (458)
Q Consensus 200 e~~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~ 279 (458)
.+...+....+...+....|+....+-..+....+....++...+.|..-..-..+.+..++.....+.+.+..+..+..
T Consensus 186 ~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~ 265 (670)
T KOG0239|consen 186 DLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVS 265 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 012695 280 KKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAE 327 (458)
Q Consensus 280 ~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~ 327 (458)
....+++..-.+...++..+....-..-+....+.++.+|-++|.+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 266 LLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 416
>PRK01203 prefoldin subunit alpha; Provisional
Probab=66.08 E-value=94 Score=27.41 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEVS 448 (458)
Q Consensus 416 ~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~ 448 (458)
...|+++++.+...+.+|...+.+++.++..|-
T Consensus 89 ie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 89 IERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666666677777777777666666553
No 417
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=66.01 E-value=1.9e+02 Score=30.98 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCCCC-C----CCCC--CCCCHHH-----HHHHHHHHHHccCC-------CC-CcchH
Q 012695 53 DLYTDRSHQSSAIRAINAHLSSHSFHI-A----FPLK--QVPSVKD-----ITDVIKFLISQLDY-------PS-TTKFE 112 (458)
Q Consensus 53 Rpl~DK~~q~~~~~~I~~fL~~~~f~~-s----~k~l--~~PT~Kd-----F~~If~fL~~~iD~-------~~-~~k~E 112 (458)
=|+-|-|-...+++-=.+| .++||+ . ..+. ..|..-- ...+...||.-+|. +| +...|
T Consensus 49 hpHGd~Siy~aiV~MAQ~f--s~n~pLldg~GnFGS~~Gd~aAA~RYte~rLs~~a~~l~~d~d~~~v~~~~n~Dg~~~E 126 (445)
T cd00187 49 HPHGDSSLYDTIVRMAQDF--SNNIPLLDPQGNFGSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYDGQEVE 126 (445)
T ss_pred CCCchHHHHHHHHHHhhhc--cccceeEeCCCCCCCCCCCcccchHHHhhhhhHHHHHHHhhcCccccccccCCCCCccC
Confidence 6889999999999988899 778873 1 1221 3343322 23446677777772 22 33333
Q ss_pred hHHHHHHHhcCCCC-ccccccccCCC-----CCCChHHHHHHHHHHHH
Q 012695 113 EDLFVVLKSLSCPF-KINKSTLRSPN-----SPHNWPAYLALIHWLVQ 154 (458)
Q Consensus 113 eEv~~~lK~L~YP~-~IsKS~L~avG-----~pHsWP~~Lg~L~WLv~ 154 (458)
=+|++ =..|- =||=|.=-||| -|||---++.++..+++
T Consensus 127 P~~lp----~~iP~lLvNGs~GIavG~aT~IPphN~~evi~a~~~~l~ 170 (445)
T cd00187 127 PEVLP----PIFPNLLVNGSSGIAVGMATNIPPHNLREVIDALRALID 170 (445)
T ss_pred Ccccc----ccCCeeeeecCcceeeeeccCCCCCCHHHHHHHHHHHhc
Confidence 33311 13454 45666644444 56777777776666554
No 418
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=65.89 E-value=47 Score=28.02 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 235 EREKLEKEKCVL--EEDLNKFNAIIGELNMRKEKMEKLVEEK 274 (458)
Q Consensus 235 ~l~~L~~~~~~L--~~D~~Kf~~yi~~~~~k~~~~e~~l~~l 274 (458)
++..++.+...| .+|+.+++--+..+++....+...+..+
T Consensus 50 Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 50 RLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444455554444 4455444444444444444444444433
No 419
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.82 E-value=38 Score=31.55 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFK 296 (458)
Q Consensus 262 ~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~ 296 (458)
.+.++..++++.+++|++.++.+++.++.+.+.|+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555544443
No 420
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=65.77 E-value=3e+02 Score=33.04 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=3.4
Q ss_pred CCHHHHHH
Q 012695 87 PSVKDITD 94 (458)
Q Consensus 87 PT~KdF~~ 94 (458)
|+.|.-+.
T Consensus 41 ~~~k~~~~ 48 (1109)
T PRK10929 41 PAQAEIVE 48 (1109)
T ss_pred hhhHHHHH
Confidence 44444333
No 421
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=65.73 E-value=1.3e+02 Score=28.97 Aligned_cols=24 Identities=4% Similarity=0.311 Sum_probs=16.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHH
Q 012695 302 QTINARDVERMRRELQAVERDIAD 325 (458)
Q Consensus 302 Q~~S~~di~rmn~E~~~L~~~i~~ 325 (458)
++.++.+++++...........+.
T Consensus 148 ~~~~~ke~eK~~~K~~k~~~~~~~ 171 (239)
T cd07647 148 SGAQPKEAEKLKKKAAQCKTSAEE 171 (239)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457788888887776665554443
No 422
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=65.72 E-value=41 Score=26.74 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 285 HKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 285 l~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
++.+..+...|+.+|+.-.-+..+|..++...+.+...++.++.+..+.
T Consensus 13 Ik~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 13 IKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444444566666666666666555555544443
No 423
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.57 E-value=85 Score=26.68 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 243 KCVLEEDLNKFNAIIGEL 260 (458)
Q Consensus 243 ~~~L~~D~~Kf~~yi~~~ 260 (458)
...++.++..++.-++..
T Consensus 11 ~~el~n~La~Le~slE~~ 28 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDE 28 (107)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444443333333333
No 424
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=65.56 E-value=1.1e+02 Score=27.94 Aligned_cols=98 Identities=7% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 203 EKLEKEKENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEE--------DLNKFNAIIGELNMRKEKMEKLVEE 273 (458)
Q Consensus 203 ~kl~~~~~~~~e~~~~L~~e~~eLe~-l~~~~~~l~~L~~~~~~L~~--------D~~Kf~~yi~~~~~k~~~~e~~l~~ 273 (458)
.++...+.+....+...+....+... .......+......+..+.. |+...+.|...+..+...++..+..
T Consensus 18 ~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~ 97 (158)
T PF09486_consen 18 RRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAA 97 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 274 KEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 274 l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
+...+..+..++......+..+..+|+
T Consensus 98 l~~~l~~~~~~ia~~~raIarn~a~id 124 (158)
T PF09486_consen 98 LRQALRAAEDEIAATRRAIARNDARID 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH
No 425
>PRK10698 phage shock protein PspA; Provisional
Probab=65.47 E-value=1.3e+02 Score=28.85 Aligned_cols=24 Identities=17% Similarity=0.511 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 309 VERMRRELQAVERDIADAENARNE 332 (458)
Q Consensus 309 i~rmn~E~~~L~~~i~~l~~~~~~ 332 (458)
++++......|+..|.+++.+...
T Consensus 115 ~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 115 LARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 426
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=65.34 E-value=2.1e+02 Score=31.10 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 267 ~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
+..+|.++..++............|-..|..+++
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~ 451 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLE 451 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445545554444444455555555555543
No 427
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=65.32 E-value=96 Score=27.25 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E 315 (458)
.+.++.....-+..+.+-..-|..+++++.+.+..+.....++++....+.+ .|+..+ ..+..-.+ ...-+|-..
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e--ae~k~~-~~~a~~P~--~~~~~~wql 77 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE--AEIKQD-EFFANNPP--HEYGRGWQL 77 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHC-CCCTT-TT--SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhccc-ccccCCCc--cccccHHHH
Confidence 3444455555556666666667777777777777777777777766555555 333333 11111111 122223323
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695 316 L-QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQA 361 (458)
Q Consensus 316 ~-~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~ 361 (458)
+ ..+++++..-+.++...+....+.+-.|.+....|....+.-++.
T Consensus 78 kvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~ 124 (136)
T PF11570_consen 78 KVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQK 124 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 2 235666666666666666666666655555555555544444443
No 428
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=65.19 E-value=1e+02 Score=28.12 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
..+......++.++.....+++.++.|+..|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443333
No 429
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=64.93 E-value=45 Score=35.25 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 276 REIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
.+..+...+++.++.++..+-+.|..
T Consensus 37 ~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 37 DERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455555555555433
No 430
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.45 E-value=64 Score=24.92 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012695 276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDL 340 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~ 340 (458)
..++..-.-.+.++.||..|..+ +..+..|+..|....+.+..+++.+-.+...+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q----------~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQ----------EKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33334444455666666666543 44566677777777776666666665554443
No 431
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=64.41 E-value=1.8e+02 Score=30.18 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 274 KEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 274 l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
.+.++...+.++...+.+.++.+.-.+.--+|..+++....+.+..+..++.++..+...+..+
T Consensus 125 ~~a~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~~ld~a~~~~~~a~a~l~~a~~~l~~~~~~~ 188 (390)
T PRK15136 125 YQANIELQKTALAQAQSDLNRRVPLGNANLIGREELQHARDAVASAQAQLDVAIQQYNANQAMI 188 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666677777777777777777888999999999888888888887777666554433
No 432
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=64.20 E-value=1.9e+02 Score=30.19 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHH
Q 012695 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKF 348 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~ 348 (458)
.+|..++.-+..|+..+..++..+..|......+|..+.-+-
T Consensus 324 ~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~ 365 (384)
T PF03148_consen 324 EEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKN 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443333
No 433
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=64.15 E-value=85 Score=26.19 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 399 ESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRID 438 (458)
Q Consensus 399 ~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~ 438 (458)
......+..+...+..+...+..+++.+.+.+.+.+.++.
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433
No 434
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=64.02 E-value=45 Score=28.30 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (458)
Q Consensus 256 yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~ 304 (458)
-+..++..+-.+-..+..+++.+....+|-..++-|++.|+.++..+.+
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~ 57 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTL 57 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccc
Confidence 3567777777888888888888988899999999999999999888544
No 435
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=63.82 E-value=1e+02 Score=28.13 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 262 ~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
....++.+++..++++++....++..++++-+.|-.+
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555554444433
No 436
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=63.60 E-value=24 Score=36.62 Aligned_cols=52 Identities=25% Similarity=0.399 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (458)
Q Consensus 253 f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~ 304 (458)
+..-++.++.++..++..+..+...+...+..+..+.....+|...+...++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNi 193 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNI 193 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCce
Confidence 4445566666666666666666666665566666666666666666555544
No 437
>PF15294 Leu_zip: Leucine zipper
Probab=63.14 E-value=1.3e+02 Score=30.05 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHh-----HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 204 KLEKEKEN-----VSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (458)
Q Consensus 204 kl~~~~~~-----~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el 278 (458)
||.+..+. +..++.+|+.+...|- +++..+++.....-.+..|++.-+..++. ...-..-...+
T Consensus 117 KL~pl~e~g~~~ll~kEi~rLq~EN~kLk------~rl~~le~~at~~l~Ek~kl~~~L~~lq~-----~~~~~~~k~~~ 185 (278)
T PF15294_consen 117 KLEPLNESGGSELLNKEIDRLQEENEKLK------ERLKSLEKQATSALDEKSKLEAQLKELQD-----EQGDQKGKKDL 185 (278)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHH
Q 012695 279 GKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKF 348 (458)
Q Consensus 279 ~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~ 348 (458)
-.+..++..++.....++..+... +.........|+.++......+-..+..+...+.++.+++
T Consensus 186 ~~~~q~l~dLE~k~a~lK~e~ek~------~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKf 249 (278)
T PF15294_consen 186 SFKAQDLSDLENKMAALKSELEKA------LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKF 249 (278)
T ss_pred cccccchhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHh
No 438
>PRK12704 phosphodiesterase; Provisional
Probab=62.92 E-value=2.3e+02 Score=30.86 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 012695 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL 316 (458)
Q Consensus 237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~ 316 (458)
+.+.+....++.++..-+.-+...+.+..+-++.+......|+.++.++...+++..+.++.++.+.-..++...-....
T Consensus 64 eE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~ 143 (520)
T PRK12704 64 EEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHH
Q 012695 317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSME 357 (458)
Q Consensus 317 ~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~ 357 (458)
=+--..+..-+.+..=+.+--.+.....+..+..++.-...
T Consensus 144 l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (520)
T PRK12704 144 LERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKE 184 (520)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=62.87 E-value=1e+02 Score=26.82 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=15.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh
Q 012695 204 KLEKEKENVSEYVEELKKKVSEMEG 228 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~~eLe~ 228 (458)
++......+..+++..+.+++.|+.
T Consensus 27 rl~~R~~~lk~dik~~k~~~enled 51 (131)
T KOG1760|consen 27 RLNSRKDDLKADIKEAKTEIENLED 51 (131)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666553
No 440
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=62.74 E-value=2.6e+02 Score=31.38 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=12.6
Q ss_pred cCCCCccccccccCCCCCCChHHHH
Q 012695 122 LSCPFKINKSTLRSPNSPHNWPAYL 146 (458)
Q Consensus 122 L~YP~~IsKS~L~avG~pHsWP~~L 146 (458)
.|+||.++.-+=..+... +=|.+.
T Consensus 19 ~~~pf~~~~~s~~~e~~d-~~~~~q 42 (786)
T PF05483_consen 19 FSLPFAMTNLSKNGENID-SDPALQ 42 (786)
T ss_pred cCCcccccccccccccCC-ccHHHH
Confidence 589996654443333332 455543
No 441
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=62.72 E-value=31 Score=36.87 Aligned_cols=13 Identities=15% Similarity=0.498 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 012695 287 RICEENEEFKKRV 299 (458)
Q Consensus 287 ~l~~E~~~L~~~v 299 (458)
.++.|++.|+.++
T Consensus 108 eLEaE~~~Lk~Ql 120 (475)
T PRK13729 108 KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 442
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=62.63 E-value=46 Score=24.82 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 411 ~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
+++.++.++.-.++.++..+++.++.++.++..++.+-.-|
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666666666655444
No 443
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=62.60 E-value=72 Score=32.09 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 256 IIGELNMRKEKMEKLVEEKEREIG-------KKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAEN 328 (458)
Q Consensus 256 yi~~~~~k~~~~e~~l~~l~~el~-------~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~ 328 (458)
++++++.+..++.+.|+.+++|-. .++.|++.+.+-+.+|...|-+-|-.+.-|.--++...+|...-..++.
T Consensus 1 iVdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeR 80 (351)
T PF07058_consen 1 IVDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLER 80 (351)
T ss_pred CchhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 012695 329 ARNEWE 334 (458)
Q Consensus 329 ~~~~l~ 334 (458)
++....
T Consensus 81 ELARaK 86 (351)
T PF07058_consen 81 ELARAK 86 (351)
T ss_pred HHHHhh
No 444
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.54 E-value=75 Score=25.04 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (458)
Q Consensus 239 L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el 278 (458)
|.++-..|....-+....|..+..+....+..+..+...+
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444333333
No 445
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=62.39 E-value=1.1e+02 Score=26.84 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFK 296 (458)
Q Consensus 255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~ 296 (458)
+-+..++.++..++..+..+..++..+..+++.+.....++.
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555444443
No 446
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=62.14 E-value=3e+02 Score=31.77 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSME 357 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~ 357 (458)
.|-.|-....+....+..+.....+++....+++..++....++...+..
T Consensus 240 ~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 240 SILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444447777777777777777777777777777787788888877776
No 447
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.96 E-value=2.2e+02 Score=30.16 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=32.6
Q ss_pred HHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 209 KENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRK 264 (458)
Q Consensus 209 ~~~~~e~~~~L~~e~~eLe~-l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~ 264 (458)
...+..++.-|+.++.+|+. .....++--.+..++.+|..-..-+++.+...+.+.
T Consensus 217 r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElra 273 (502)
T KOG0982|consen 217 RIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRA 273 (502)
T ss_pred hhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 33455667778888888876 111224455666667777666655555555544433
No 448
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=61.73 E-value=1.7e+02 Score=28.84 Aligned_cols=85 Identities=8% Similarity=0.153 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH------HHHHHHHHH
Q 012695 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER------MRRELQAVE 320 (458)
Q Consensus 247 ~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~r------mn~E~~~L~ 320 (458)
.+|++.+..--..+....+....+=..+--.+..++.|..++...+..|+.+ |.-|+....+ +|-...+|+
T Consensus 107 ~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~q---q~Ps~~qlR~~llDPAinl~F~rlK 183 (330)
T KOG2991|consen 107 SDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQ---QQPSVAQLRSTLLDPAINLFFLRLK 183 (330)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCcHHHHHHHHhhChHHHHHHHHHH
Confidence 3444444443333333333333333334445666677777777777777665 4455554433 344555555
Q ss_pred HHHHHHHHHHHHHH
Q 012695 321 RDIADAENARNEWE 334 (458)
Q Consensus 321 ~~i~~l~~~~~~l~ 334 (458)
..++....++++++
T Consensus 184 ~ele~tk~Klee~Q 197 (330)
T KOG2991|consen 184 GELEQTKDKLEEAQ 197 (330)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555544444444
No 449
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=61.62 E-value=60 Score=27.42 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012695 405 VKRSSVEKLEELISL--QQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFL 455 (458)
Q Consensus 405 i~~~~~~~~~e~~~l--~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~ 455 (458)
..+|....+.++..+ ++.+..+.-.+.+.+.++.++..+++.+..+++.-|
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777 888889999999999999999999999988876543
No 450
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=61.59 E-value=52 Score=35.84 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHH
Q 012695 142 WPAYLALIHWLV 153 (458)
Q Consensus 142 WP~~Lg~L~WLv 153 (458)
|..++ -+.|++
T Consensus 23 ~S~~~-r~~w~~ 33 (907)
T KOG2264|consen 23 VSAFL-RFIWFV 33 (907)
T ss_pred ehhhH-HHHHHH
Confidence 44443 346776
No 451
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=61.58 E-value=2.9e+02 Score=31.50 Aligned_cols=221 Identities=11% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh--ccCCCChHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 012695 203 EKLEKEKENVSEYVEELKKKVSEMEG--AMTGPTEREKLEKEKCVLEEDLNKFNAI------IGELNMRKEKMEKLVEEK 274 (458)
Q Consensus 203 ~kl~~~~~~~~e~~~~L~~e~~eLe~--l~~~~~~l~~L~~~~~~L~~D~~Kf~~y------i~~~~~k~~~~e~~l~~l 274 (458)
..+..+.+...+.+..|.+.+-+|.- -++..++.++++++....+.|.-=+..+ ++-+-+-...-++.-+.+
T Consensus 860 QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~e~~~fI~qhG~tls~LEpia~~LqsDPe~~e~L 939 (1480)
T COG3096 860 QQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQEAARFIQQHGNTLSKLEPIASVLQSDPEQFEQL 939 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHhhhhHHHHHhCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHH
Q 012695 275 EREIGKKVEEHKRICEENEEFKKRVKLQ-TINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353 (458)
Q Consensus 275 ~~el~~~~~el~~l~~E~~~L~~~v~~Q-~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~ 353 (458)
+++........+.+++..=.|-..|... -|+-.|--.|-.|-..|...+..--.+.+.-.....+ .+..-..
T Consensus 940 ~~~y~qA~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLnekLr~rL~q~eaeR~~~re-------qlrQ~Q~ 1012 (1480)
T COG3096 940 KEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKLRQRLEQAEAERTRARE-------QLRQHQA 1012 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhhHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q ss_pred HHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHH---------------HHHHHHHHHHH
Q 012695 354 LSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKR---------------SSVEKLEELIS 418 (458)
Q Consensus 354 ~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~---------------~~~~~~~e~~~ 418 (458)
.+..||..+-.|+ ..-|-| +..|+.|..++.+ ++.+.+..+..
T Consensus 1013 Q~sqYnqvl~~Lk-------------------sS~~~K---~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst 1070 (1480)
T COG3096 1013 QLSQYNQVLASLK-------------------SSYDTK---KELLNELQQELQDIGVRADSGAEERARIRRDELHAQLST 1070 (1480)
T ss_pred HHHHHHHHHHHHH-------------------hhhhHH---HHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 419 LQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 419 l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
-...-..+.+.+.-...|..+|..++++++..|.
T Consensus 1071 ~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~ 1104 (1480)
T COG3096 1071 NRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYF 1104 (1480)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
No 452
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=61.58 E-value=1.6e+02 Score=28.63 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 350 ELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEM 426 (458)
Q Consensus 350 ~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~ 426 (458)
..+-+...|..+..+|+. +++.|=.+.|+|+. -++|..+++.........+.+..+.+..|...
T Consensus 141 ~~~~L~~kceam~lKLr~---~~~~iL~~TYTpe~----------v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Y 204 (238)
T PF14735_consen 141 KAEYLEAKCEAMILKLRV---LELEILSDTYTPET----------VPALRKIRDHLEEAIEELEQELQKARQRLESY 204 (238)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHccCCHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666663 22333334566643 34677788888777777777777777766655
No 453
>PRK10698 phage shock protein PspA; Provisional
Probab=61.50 E-value=1.6e+02 Score=28.35 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhc
Q 012695 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL 365 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l 365 (458)
+.+..+..+++.....++.+...+..++.++.+ ....-..++..++..--+.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e-------ak~k~~~L~aR~~~A~a~~ 150 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSE-------TRARQQALMLRHQAASSSR 150 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 445555556666655555555555555554433 4445555566666554443
No 454
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=61.38 E-value=67 Score=29.66 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 393 TLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 393 ~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
.+...+..|+..+.....+..+|+..|..+++.+ ++.......|..+..-++.+|+.|
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~l----e~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRL----EEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777777777777777777777766655 333344445555555555555443
No 455
>COG5293 Predicted ATPase [General function prediction only]
Probab=61.38 E-value=2.3e+02 Score=30.30 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=63.5
Q ss_pred CCCChHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695 231 TGPTEREKLEKEKC-----VLEEDLNKFNAIIGELN-MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (458)
Q Consensus 231 ~~~~~l~~L~~~~~-----~L~~D~~Kf~~yi~~~~-~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~ 304 (458)
..|+.++.+=++.. ....|.++.+.+...+- ++-.=+..+|.+++..|.....++..+-.+++++-..+.+.|+
T Consensus 298 ~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~ 377 (591)
T COG5293 298 FCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGV 377 (591)
T ss_pred CChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34555555444433 23556777776665554 4555567788888888888888888888888888888888776
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 305 NARDVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 305 S~~di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
.+++.-+..|.-++.-.++.++.+++.+
T Consensus 378 -~e~y~~l~ee~~~~~~elae~~~rie~l 405 (591)
T COG5293 378 -FEKYQTLCEEIIALRGELAELEYRIEPL 405 (591)
T ss_pred -HHHHHHHHHHHHHHhhhHHHHHHhhhHH
Confidence 3455444444444444454444444443
No 456
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=61.17 E-value=1.7e+02 Score=30.13 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012695 430 IEGKRKRIDALQFHINEVSAKKFLFLQP 457 (458)
Q Consensus 430 i~~k~~e~~~Le~~~~~l~~q~~~~~~~ 457 (458)
.+--+.|+..++.++.+|+.+|..-|-|
T Consensus 78 ~ema~~Ei~~~~~~~~~le~~L~~lLlP 105 (363)
T COG0216 78 REMAEEEIKELEAKIEELEEELKILLLP 105 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3447889999999999999999998877
No 457
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=61.16 E-value=1.2e+02 Score=28.75 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012695 242 EKCVLEEDLNKFNAIIGELNMR 263 (458)
Q Consensus 242 ~~~~L~~D~~Kf~~yi~~~~~k 263 (458)
+...|+..+..+++-+...+..
T Consensus 97 EevrLkrELa~Le~~l~~~~~~ 118 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQA 118 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444443333
No 458
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.09 E-value=2.7e+02 Score=31.03 Aligned_cols=40 Identities=5% Similarity=0.193 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCC
Q 012695 328 NARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL 367 (458)
Q Consensus 328 ~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l 367 (458)
.++.-++..+|-....++.....+....+.|+..+.....
T Consensus 186 ~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~le~~sv 225 (611)
T KOG2398|consen 186 SRLSFLKEELWLFANQISESCVKIDQVMEEFKLTLESCSV 225 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhccCCH
Confidence 4566667777877777777777777778887776554443
No 459
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=61.03 E-value=49 Score=32.62 Aligned_cols=25 Identities=0% Similarity=0.054 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695 280 KKVEEHKRICEENEEFKKRVKLQTI 304 (458)
Q Consensus 280 ~~~~el~~l~~E~~~L~~~v~~Q~~ 304 (458)
....+++.++.|+.+|+-+|+.+.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~ 82 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQY 82 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344455555666666666555555
No 460
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=60.88 E-value=1.7e+02 Score=32.20 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 012695 349 KELEALSMECNQ 360 (458)
Q Consensus 349 ~~lE~~v~~yN~ 360 (458)
+-++..+.-|+.
T Consensus 292 ~~~~~~~~~y~~ 303 (555)
T TIGR03545 292 KYLQKFLKYYDQ 303 (555)
T ss_pred HHHHHHHHHHHH
Confidence 344555555655
No 461
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=60.53 E-value=1.6e+02 Score=28.30 Aligned_cols=86 Identities=14% Similarity=0.244 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFKKR--VKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGR 346 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~--v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~ 346 (458)
.+...++..+...-.+++.+..++..++.. .....++.-.++.+...+......+..+...+..+...+........+
T Consensus 38 ~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~ 117 (240)
T PF12795_consen 38 KRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPER 117 (240)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 333444444444444455555555555443 222222333344444455555555555555555555555555544444
Q ss_pred HHHHHHHH
Q 012695 347 KFKELEAL 354 (458)
Q Consensus 347 ~~~~lE~~ 354 (458)
.-..+...
T Consensus 118 aq~~l~~~ 125 (240)
T PF12795_consen 118 AQQQLSEA 125 (240)
T ss_pred HHHHHHHH
Confidence 43333333
No 462
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=60.32 E-value=1.4e+02 Score=28.47 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
|..+...++..+..+++++.....+++.+..+++.-
T Consensus 134 W~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~ 169 (221)
T PF05700_consen 134 WLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRR 169 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455544444444444444333
No 463
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.96 E-value=1.1e+02 Score=25.91 Aligned_cols=30 Identities=7% Similarity=0.218 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012695 312 MRRELQAVERDIADAENARNEWESKTWDLD 341 (458)
Q Consensus 312 mn~E~~~L~~~i~~l~~~~~~l~~~~~~~e 341 (458)
++..++.++..|..++.+...+++++.+.+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433
No 464
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.63 E-value=3e+02 Score=30.97 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhH
Q 012695 284 EHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSK 343 (458)
Q Consensus 284 el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~ 343 (458)
-+........+++..+.-|+. ++.+.......+++.++.-..++....+.+.+.+-.
T Consensus 159 lr~k~dss~s~~q~e~~~~~~---~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~ 215 (716)
T KOG4593|consen 159 LRNKLDSSLSELQWEVMLQEM---RAKRLHSELQNEEKELDRQHKQLQEENQKIQELQAS 215 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666654 555555666666666655555555555555444433
No 465
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.20 E-value=85 Score=24.55 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012695 202 IEKLEKEKENVSEYVEELKKKVSEME 227 (458)
Q Consensus 202 ~~kl~~~~~~~~e~~~~L~~e~~eLe 227 (458)
.+||+..+......+.-|+-++++|.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELK 31 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555443
No 466
>PRK15396 murein lipoprotein; Provisional
Probab=58.95 E-value=71 Score=25.60 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC 358 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~y 358 (458)
+++.+..+.+.|...++.+......+...+..-.-+..|.=+.|..++..|
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555555555555554444444444555555666666555
No 467
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=58.94 E-value=1.1e+02 Score=31.43 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDL-NKFNAIIGELNMRKEKMEKLVEEKE 275 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~-~Kf~~yi~~~~~k~~~~e~~l~~l~ 275 (458)
.++.+-..+..++.|+ .||-.+++.=..|+..+++.|...+
T Consensus 166 qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 166 QLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 3555556666666665 4666666665555555555555444
No 468
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=58.84 E-value=84 Score=24.39 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el 278 (458)
++.++.+....++.++......+..+..+.+.+
T Consensus 11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l 43 (71)
T PF10779_consen 11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQL 43 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444433333333
No 469
>PF15456 Uds1: Up-regulated During Septation
Probab=58.75 E-value=1.2e+02 Score=26.43 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCc
Q 012695 304 INARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPS 383 (458)
Q Consensus 304 ~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ 383 (458)
+|.+||+.+++|...|...++.+...+. ++.+ --+....+..-|.+.-..
T Consensus 19 Ls~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k----------~RdAa~sl~~l~~~~~~~------------------- 68 (124)
T PF15456_consen 19 LSFEEVEELKKELRSLDSRLEYLRRKLA-LESK----------IRDAAHSLSRLYSSSSRR------------------- 68 (124)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----------HHHHHHHHHHhcCCCccc-------------------
Q ss_pred cccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 384 EVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 384 ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
...-.+...+-++.+.....++++.-.++..++.+...+.+.|
T Consensus 69 -------------------------~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 69 -------------------------ARFSRESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRL 111 (124)
T ss_pred -------------------------cCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
No 470
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=58.69 E-value=1.1e+02 Score=25.90 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 312 MRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 312 mn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
+...++.++..|..+...+..+.....+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e 31 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTE 31 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444333
No 471
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=58.44 E-value=92 Score=28.89 Aligned_cols=106 Identities=21% Similarity=0.329 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 194 VDNIDKGFIEKLE----KEKENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKME 268 (458)
Q Consensus 194 ~e~l~~e~~~kl~----~~~~~~~e~~~~L~~e~~eLe~-l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e 268 (458)
+.+.-+.|..++. .++..+.+-+-.|+..+..||. +...-+.+..-.+..-++..|+.|++.-+..++.|..++-
T Consensus 55 fnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 55 LNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 012695 269 KLVEEKEREIGKKVEEH-KRICEENEEFKKRV 299 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el-~~l~~E~~~L~~~v 299 (458)
.-|+.-.+.-....+-+ +.|...-+.|+.++
T Consensus 135 ~llE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (189)
T TIGR02132 135 ELLEGQQKTQDELKETIQKQIKTQGEQLQAQL 166 (189)
T ss_pred HHHhcCccchhHHHHHHHHHHhhhHHHHHHHH
No 472
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=58.36 E-value=1.3e+02 Score=26.38 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=20.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q 012695 297 KRVKLQTINARDVERMRRELQAVERDIA 324 (458)
Q Consensus 297 ~~v~~Q~~S~~di~rmn~E~~~L~~~i~ 324 (458)
.-+...++|.+||+.+-.++.+-=+-|+
T Consensus 82 ~~l~rRPLtk~dVeeLV~~IseQPK~IE 109 (126)
T PF07028_consen 82 EYLERRPLTKEDVEELVLRISEQPKFIE 109 (126)
T ss_pred HHHHcCCCCHHHHHHHHHHHHhCcHHHH
Confidence 4567799999999988777665444443
No 473
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=58.16 E-value=1.5e+02 Score=27.07 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG-KKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL 316 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~-~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~ 316 (458)
.++++...++..+....+-++.++.+......+|........ -.+.+++..-.+-..++..+.. --+.-..+...|
T Consensus 31 ~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~---~re~E~qLr~rR 107 (159)
T PF05384_consen 31 RLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAM---LREREKQLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344444444455555555555555555555555555544442 1234444444444444433321 123334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhHH
Q 012695 317 QAVERDIADAENARNEWESKTWDLDSKL 344 (458)
Q Consensus 317 ~~L~~~i~~l~~~~~~l~~~~~~~e~~~ 344 (458)
+.|++.+..+..-++..+.-+...-+.+
T Consensus 108 D~LErrl~~l~~tierAE~l~sqi~vvl 135 (159)
T PF05384_consen 108 DELERRLRNLEETIERAENLVSQIGVVL 135 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544444433
No 474
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.13 E-value=79 Score=26.85 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVS 448 (458)
Q Consensus 406 ~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~ 448 (458)
...+....+++..|..++..+.+....++-|++.|..++.+++
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444445555555555555555555555555555443
No 475
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=57.98 E-value=1.1e+02 Score=30.29 Aligned_cols=18 Identities=11% Similarity=0.292 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKF 253 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf 253 (458)
+.-.+..+..+.+++.|+
T Consensus 140 l~p~R~~r~~l~d~I~kL 157 (271)
T PF13805_consen 140 LQPSRDRRRKLQDEIAKL 157 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhHHHHHHHHHH
Confidence 334444444555555444
No 476
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=57.47 E-value=47 Score=30.81 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKV 282 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~ 282 (458)
.+.-+.+.++++...+.+..+++.++.+++.++.+.+
T Consensus 137 ~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 137 YKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666666667777777777777665544
No 477
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.14 E-value=3.4e+02 Score=30.89 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 012695 286 KRICEENEEFKKRVKLQTINARDVERMR 313 (458)
Q Consensus 286 ~~l~~E~~~L~~~v~~Q~~S~~di~rmn 313 (458)
..+...+++|+..++.-+=++.++.-..
T Consensus 670 ~Sa~rqIael~~~lE~L~~t~~~~~~~~ 697 (1104)
T COG4913 670 PSAQRQIAELQARLERLTHTQSDIAIAK 697 (1104)
T ss_pred hhHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 3344455555555555555555554333
No 478
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=57.08 E-value=1.6e+02 Score=26.95 Aligned_cols=42 Identities=10% Similarity=0.211 Sum_probs=28.8
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 012695 301 LQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDS 342 (458)
Q Consensus 301 ~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~ 342 (458)
=..+|-+||..-..+-..++-.+.-...+-..|..+-.++|.
T Consensus 71 f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LEr 112 (159)
T PF05384_consen 71 FDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELER 112 (159)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888887777777777776666666666666555555
No 479
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=56.83 E-value=1.8e+02 Score=27.66 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
.+.++..+++.+...++.+...+.+++.+
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~k 128 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAK 128 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 480
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=56.57 E-value=2.3e+02 Score=28.69 Aligned_cols=10 Identities=30% Similarity=0.255 Sum_probs=4.4
Q ss_pred hchhHHHHHH
Q 012695 392 STLKPALESF 401 (458)
Q Consensus 392 ~~ik~~L~~l 401 (458)
...+.+|.+-
T Consensus 230 ~kqq~al~ks 239 (301)
T PF06120_consen 230 DKQQQALEKS 239 (301)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 481
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=56.49 E-value=64 Score=29.22 Aligned_cols=49 Identities=12% Similarity=0.323 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 282 ~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
......+..++..|+.+|....=...+...-+...+.|+..|+.++...
T Consensus 19 K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 19 KAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3344444445555544444443333333332223344444444333333
No 482
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=56.40 E-value=2.4e+02 Score=28.86 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Q 012695 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARD 308 (458)
Q Consensus 253 f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~d 308 (458)
.+.|++.+..+. ..+.+.-+++++...+.++...+.+..+.+.. +.-++++.
T Consensus 156 ~~~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~--~~~~d~~~ 207 (362)
T TIGR01010 156 GERLINRLNERA--RKDTIAFAENEVKEAEQRLNATKAELLKYQIK--NKVFDPKA 207 (362)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcChHH
Confidence 456666653333 45677778888888888888888777777664 44445443
No 483
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=56.32 E-value=51 Score=28.31 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=10.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 012695 204 KLEKEKENVSEYVEELKKKVSEME 227 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~~eLe 227 (458)
.+...++.+...+..|...+.+++
T Consensus 10 ql~~~i~~l~~~i~~l~~~i~e~~ 33 (126)
T TIGR00293 10 ILQQQVESLQAQIAALRALIAELE 33 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 484
>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.
Probab=56.28 E-value=19 Score=33.79 Aligned_cols=103 Identities=13% Similarity=0.262 Sum_probs=57.5
Q ss_pred CCCCCCCC------CCCCCHHHHHHHHHHHHHccC-CCCCcchHhHHHHHHHhcCCCCccccccccCCCC-CCChHHHHH
Q 012695 76 SFHIAFPL------KQVPSVKDITDVIKFLISQLD-YPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNS-PHNWPAYLA 147 (458)
Q Consensus 76 ~f~~s~k~------l~~PT~KdF~~If~fL~~~iD-~~~~~k~EeEv~~~lK~L~YP~~IsKS~L~avG~-pHsWP~~Lg 147 (458)
|.|.++.+ -..++.|....+.+.++...| -+++-+-.|++.++|..|- .+|.-++. |..|..---
T Consensus 75 G~P~Tie~~~~~~~~~~~~ak~Vae~t~~FIT~mDaLKLn~~a~DqLhPlL~dL~-------~slnr~~~~~~dfe~r~k 147 (188)
T PF03997_consen 75 GVPATIEHRISSSSDKGNSAKLVAEATQNFITLMDALKLNYRAKDQLHPLLSDLM-------QSLNRVTDLPPDFEGRSK 147 (188)
T ss_dssp TSS--------------CHHHHHHHHHHHHHHHHHHHHTT--BHHHHHHHHHHHH-------HHHHHCTTS-TT-CCHHH
T ss_pred CCCCchhhhcccccCCchHHHHHHHHhChhhhhhHHHhccchhHhhHhhHHHHHH-------HHHhccCCCCCCCccHHH
Confidence 34555554 245567888888888888888 4555577889999998874 22222222 446777777
Q ss_pred HHHHHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHHHHh
Q 012695 148 LIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIE 188 (458)
Q Consensus 148 ~L~WLv~l~~~~~~~~~~~~~~~~~~~~~~y~~~~Y~~fl~ 188 (458)
+..||+.|..+... +.-+...-+-|.-=+-.+|..|..
T Consensus 148 l~~Wl~~Ln~m~as---deL~e~q~rqllfDle~aY~~F~~ 185 (188)
T PF03997_consen 148 LVEWLIKLNGMKAS---DELSEEQARQLLFDLESAYNAFYR 185 (188)
T ss_dssp HHHHHHHHHTS-TT----B--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcc---cccCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999877521 000111223344446778888753
No 485
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.27 E-value=1.4e+02 Score=26.30 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEEN 292 (458)
Q Consensus 261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~ 292 (458)
++.+..++..+.+++.++.++..|+..+..+.
T Consensus 86 qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 86 QSLIKTYEIVVKKLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333
No 486
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.19 E-value=81 Score=26.47 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 420 QQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 420 ~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
.++.|..++.+-.-|.++++|++++.+||+++.
T Consensus 58 REEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 58 REEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777888888999999999999999999986
No 487
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=56.03 E-value=1.8e+02 Score=27.47 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 012695 280 KKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL 316 (458)
Q Consensus 280 ~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~ 316 (458)
+...+++.++.+..++...+..|..+.+|+.++....
T Consensus 50 ~l~~e~E~~~k~l~de~~E~r~~~~tke~lk~l~~~~ 86 (231)
T COG5493 50 ELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQ 86 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333444444444455566666777777776554433
No 488
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.00 E-value=72 Score=32.68 Aligned_cols=96 Identities=17% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIAD 325 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~ 325 (458)
++.-+.+.++-+...+.+....+..+..+++.+...+.+++....+..+| ..+++.+...++.-.+-+..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l----------~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQEL----------EEEIEETERKLERAEKLISG 288 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhccHHHHHhh
Q ss_pred HHHHHHHHHHHhhHHHhHHhhHHHHH
Q 012695 326 AENARNEWESKTWDLDSKLGRKFKEL 351 (458)
Q Consensus 326 l~~~~~~l~~~~~~~e~~~~~~~~~l 351 (458)
+.....+|.+.+.+++.......-+.
T Consensus 289 L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 289 LSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp CHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHhcccHHHH
No 489
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=55.99 E-value=58 Score=30.08 Aligned_cols=54 Identities=17% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHH
Q 012695 199 KGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNA 255 (458)
Q Consensus 199 ~e~~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~ 255 (458)
.+++........++..+++.|+++++.||.+.+ ....|+.+-.-|+.++..|.+
T Consensus 112 ~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~---~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 112 ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQS---KSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
No 490
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.90 E-value=1e+02 Score=32.77 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHH
Q 012695 243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINAR-DVERMRRELQAVER 321 (458)
Q Consensus 243 ~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~-di~rmn~E~~~L~~ 321 (458)
.+.+.++...+.+-+..-. .....-.++-++..+..+...+.+.++.+++.+-+.|....-... ++..+..+...+..
T Consensus 4 ~k~ir~n~d~v~~~l~~r~-~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~ 82 (429)
T COG0172 4 LKLIRENPDAVREKLKKRG-GDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKE 82 (429)
T ss_pred HHHhhhCHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 012695 322 DIADAENARNEWESKTWDL 340 (458)
Q Consensus 322 ~i~~l~~~~~~l~~~~~~~ 340 (458)
.+..++.+..+++.++.+.
T Consensus 83 ~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 83 KLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHhccHHHHHHHHHHHHH
No 491
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.78 E-value=4.2e+02 Score=31.48 Aligned_cols=245 Identities=5% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 012695 209 KENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEK---MEKLVEEKEREIGKKVEEH 285 (458)
Q Consensus 209 ~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~---~e~~l~~l~~el~~~~~el 285 (458)
+.....+...+++.+..+.........+..+.........-+..+......+...... ....+......+.....+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 409 (1042)
T TIGR00618 330 RAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQ 409 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHh
Q 012695 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAEN-ARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKR 364 (458)
Q Consensus 286 ~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~-~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~ 364 (458)
......... ...+..+--..........++..+......... ...............+......++.+-..+...-+.
T Consensus 410 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 488 (1042)
T TIGR00618 410 ATIDTRTSA-FRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK 488 (1042)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCcceEecC----CCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 365 LKLATEIQYSLN----SNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDAL 440 (458)
Q Consensus 365 l~l~~d~~~~ln----~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~L 440 (458)
..+.....--+. |-+.+..+..-..|....-+.-..+.................++.++..+...+.....++..+
T Consensus 489 ~~~~~~r~~l~~~~~cplcgs~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~ql~~l~~q~~~lq~ql~ql 568 (1042)
T TIGR00618 489 KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568 (1042)
T ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhh
Q 012695 441 QFHINEVSAKKFLF 454 (458)
Q Consensus 441 e~~~~~l~~q~~~~ 454 (458)
+.++..+.++...+
T Consensus 569 ~~ql~~l~q~wqe~ 582 (1042)
T TIGR00618 569 QQSFSILTQCDNRS 582 (1042)
T ss_pred HHHHHHHHHHHHHH
No 492
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=55.74 E-value=1.7e+02 Score=27.12 Aligned_cols=161 Identities=12% Similarity=0.183 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHH
Q 012695 173 NSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNK 252 (458)
Q Consensus 173 ~~~~~y~~~~Y~~fl~g~d~~~e~l~~e~~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~K 252 (458)
+.+++-....+..|+..--... +|..-+.........-.+.+.+.++..=+-.+-|+ ++|+..
T Consensus 14 Kdmy~aTE~~wak~~~q~m~TE-----EFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPS------------r~Diar 76 (189)
T TIGR02132 14 KDAYDKTESFWGKAIGDNIKRE-----EFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPT------------KEDIAN 76 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC------------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH----HHHHHHHHH-HHHH
Q 012695 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR----ELQAVERDI-ADAE 327 (458)
Q Consensus 253 f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~----E~~~L~~~i-~~l~ 327 (458)
|-+.+-+++.|+..++..+..+-..+.+..+.--.+..+...++..|..-.--++.+-++-. -.++|+.+| ..+.
T Consensus 77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~~~~ 156 (189)
T TIGR02132 77 VASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQKQIK 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHh
Q ss_pred HHHHHHHHHhhHHHhHHhhHHHH
Q 012695 328 NARNEWESKTWDLDSKLGRKFKE 350 (458)
Q Consensus 328 ~~~~~l~~~~~~~e~~~~~~~~~ 350 (458)
.+=+.++-.+-+..-++..+..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~ 179 (189)
T TIGR02132 157 TQGEQLQAQLLEKQEALAAKLKA 179 (189)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhh
No 493
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=55.61 E-value=3.2e+02 Score=30.07 Aligned_cols=194 Identities=16% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELN--MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR 313 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~--~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn 313 (458)
...++.+...+..++...+.....+. ...+.+...-...-++......-+.....-+..+... ..++.+++.
T Consensus 347 ~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~------~~~~~~~~~ 420 (607)
T KOG0240|consen 347 KRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGS------LEEEEDILT 420 (607)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccc------hHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhhc
Q 012695 314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKST 393 (458)
Q Consensus 314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ 393 (458)
.++..|.+.+++...+++...+-...++.++...-+-+-.....|-.+...++ +|+-.+... .+--..
T Consensus 421 e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~---~~Q~~~e~~---------~~e~~e 488 (607)
T KOG0240|consen 421 ERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELS---EIQEENEAA---------KDEVKE 488 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---HHHHHHHHH---------HHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 394 LKPALESFADDVKRSSVEKLEELISL-QQQSSEMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 394 ik~~L~~l~~~i~~~~~~~~~e~~~l-~~~l~~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
+-.+|.+|+......+.+........ ...+..+++..+..+..+.++..++...
T Consensus 489 ~~~al~el~~~~~~~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~~~~~l~~~ 543 (607)
T KOG0240|consen 489 VLTALEELAVNYDQKSEEKESKLSQNLKSELQSLQEPSEHQSKRITELLSELRKD 543 (607)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhhhhhhHHHHHhhhhcccchhHHHHHHHHHHHhh
No 494
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=55.52 E-value=2.3e+02 Score=28.45 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012695 245 VLEEDLNKFNAIIGELNMRKEKME-----KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAV 319 (458)
Q Consensus 245 ~L~~D~~Kf~~yi~~~~~k~~~~e-----~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L 319 (458)
.++.++.+.+.-+...+....... ..+...+.++...+.+++..+.+.++.+.-.+.--+|..+++.-..+....
T Consensus 78 ~~~~~l~~~~a~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a 157 (331)
T PRK03598 78 PYENALMQAKANVSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQA 157 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----HHhhHHHhHHhhHHHHHHHHHHHHHH
Q 012695 320 ERDIADAENARNEWE-----SKTWDLDSKLGRKFKELEALSMECNQ 360 (458)
Q Consensus 320 ~~~i~~l~~~~~~l~-----~~~~~~e~~~~~~~~~lE~~v~~yN~ 360 (458)
+..++.+...+..+. ......+..+......++..-..++.
T Consensus 158 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l~~ 203 (331)
T PRK03598 158 QATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQD 203 (331)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 495
>COG5283 Phage-related tail protein [Function unknown]
Probab=55.48 E-value=4.4e+02 Score=31.64 Aligned_cols=158 Identities=8% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 209 KENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKR 287 (458)
Q Consensus 209 ~~~~~e~~~~L~~e~~eLe~-l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~ 287 (458)
+..+.+.++.-.+...-+|+ +....+-+..-..+..-|.+=++|-..++.++++...+.-..+...++...+...++-.
T Consensus 24 in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tq 103 (1213)
T COG5283 24 INVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQ 103 (1213)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH----hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHH
Q 012695 288 ICEENEEFKKRVK----LQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK 363 (458)
Q Consensus 288 l~~E~~~L~~~v~----~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~ 363 (458)
++.....+-.+++ .-.+-...+.+|+.++..+.+.+..--+...+...++-.....+....+..-.....||..+.
T Consensus 104 ae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~esf~~q~~aln~q~~ 183 (1213)
T COG5283 104 AENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQTEALNKQLE 183 (1213)
T ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHH
Q ss_pred hcC
Q 012695 364 RLK 366 (458)
Q Consensus 364 ~l~ 366 (458)
..+
T Consensus 184 ~t~ 186 (1213)
T COG5283 184 RTK 186 (1213)
T ss_pred hhh
No 496
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=55.39 E-value=1.4e+02 Score=29.58 Aligned_cols=82 Identities=23% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 219 LKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 219 L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
|+..+.++-.....-+.-+....++.....++.....-++.+.....+.++++.++...+.+....+..++.+..+|.+.
T Consensus 171 LR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~ 250 (269)
T PF05278_consen 171 LRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKT 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 012695 299 VK 300 (458)
Q Consensus 299 v~ 300 (458)
|.
T Consensus 251 ~~ 252 (269)
T PF05278_consen 251 IK 252 (269)
T ss_pred HH
No 497
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=55.35 E-value=52 Score=35.24 Aligned_cols=64 Identities=6% Similarity=0.152 Sum_probs=0.0
Q ss_pred cchhhchhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 388 VDYKSTLKPALESFADDV-----KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 388 ~d~k~~ik~~L~~l~~~i-----~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
+|+.++|-+.+...-+.- +.+..+++.++..++.+++.+.....+...+|+.|++++..|++|+
T Consensus 52 ~~~~~vV~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 52 PDMTGVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred CCccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
No 498
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=54.85 E-value=98 Score=23.99 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 403 DDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 403 ~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
.++.++...+...+..+++.++.+....+.....+..+..+++++++.+
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=54.81 E-value=3.1e+02 Score=29.75 Aligned_cols=244 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHhCCCCChhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHhccCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 012695 184 LNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKV-SEMEGAMTGPTEREKLEKEKCVLEEDLNKFNA-IIGELN 261 (458)
Q Consensus 184 ~~fl~g~d~~~e~l~~e~~~kl~~~~~~~~e~~~~L~~e~-~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~-yi~~~~ 261 (458)
..|+...-..+.++...|. .+++.+.+.....-..+.-+ +++| .+...|.+.....-..+..=.+ .....+
T Consensus 185 ~r~l~reakl~~~lqk~f~-alEk~mka~e~~rl~~E~~lreElE------~rW~~lq~l~Ee~l~al~gq~ev~~~~~~ 257 (531)
T PF15450_consen 185 LRFLKREAKLCSFLQKSFL-ALEKRMKAQESSRLRTERSLREELE------SRWQKLQELTEERLRALQGQQEVGLGGIQ 257 (531)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhHhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhH
Q 012695 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF-KKRVKLQTINARDVERMRRELQ-AVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 262 ~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L-~~~v~~Q~~S~~di~rmn~E~~-~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
....++...+..+.+.+.+.+.....-+..+.++ ...+.+++.-..-...--.+.. .|...|..+...-.-..+....
T Consensus 258 ~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~ 337 (531)
T PF15450_consen 258 SEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQS 337 (531)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhh
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchh-----hchhHHHHHHHHHHHHHHHHHHH
Q 012695 340 LDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYK-----STLKPALESFADDVKRSSVEKLE 414 (458)
Q Consensus 340 ~e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k-----~~ik~~L~~l~~~i~~~~~~~~~ 414 (458)
.--.+..+...++.-+ +.+++.|+ |+ .++|+++.++ ..+-..|..+.+++........+
T Consensus 338 ~ld~LqEksqile~sv---~~l~~~lk---DL----------d~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~le 401 (531)
T PF15450_consen 338 ELDLLQEKSQILEDSV---AELMRQLK---DL----------DDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLE 401 (531)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH---HH----------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
.+...+ +.+...+.+.++.|+.|-.++..+.+.-..
T Consensus 402 kl~~~q---~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~ 437 (531)
T PF15450_consen 402 KLDQWQ---NEMEKHLKEVQEKVDSLPQQIEEVSDKCDL 437 (531)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
No 500
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.68 E-value=2.8e+02 Score=29.17 Aligned_cols=107 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 012695 233 PTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERM 312 (458)
Q Consensus 233 ~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rm 312 (458)
...+..+..+...++.....++.-++.++.. +...+..+.+.|+...-..+.+++...++ ++..
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~LqEEr~R~erLEeqlNd~-------------~elH 274 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQ---YQREYQFILEALQEERYRYERLEEQLNDL-------------TELH 274 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhc
Q 012695 313 RRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL 365 (458)
Q Consensus 313 n~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l 365 (458)
..|+..|+++++..+.+++=.... ...+|...++.|.+-+.+|
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~e----------RaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYE----------RARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHH
Done!