Query 012695
Match_columns 458
No_of_seqs 206 out of 249
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 14:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ve7_A Kinetochore protein HEC 100.0 6.8E-52 2.3E-56 414.1 20.2 176 51-227 4-205 (315)
2 2igp_A Retinoblastoma-associat 100.0 2.6E-45 9.1E-50 315.5 12.8 109 51-159 6-119 (120)
3 1c1g_A Tropomyosin; contractIl 98.2 0.0046 1.6E-07 57.9 31.8 39 415-453 238-276 (284)
4 1c1g_A Tropomyosin; contractIl 98.0 0.0096 3.3E-07 55.6 33.8 23 425-447 234-256 (284)
5 1i84_S Smooth muscle myosin he 97.8 2.9E-05 1E-09 90.0 8.8 8 116-123 753-760 (1184)
6 1i84_S Smooth muscle myosin he 97.8 8.7E-05 3E-09 86.0 11.9 6 122-127 718-723 (1184)
7 3na7_A HP0958; flagellar bioge 97.5 0.054 1.9E-06 51.8 24.8 152 204-364 22-187 (256)
8 3na7_A HP0958; flagellar bioge 97.3 0.012 4E-07 56.5 17.9 83 258-341 42-124 (256)
9 2dfs_A Myosin-5A; myosin-V, in 96.6 0.059 2E-06 61.7 18.2 87 239-331 958-1047(1080)
10 2v71_A Nuclear distribution pr 96.5 0.35 1.2E-05 44.0 19.1 59 308-366 89-147 (189)
11 3oja_B Anopheles plasmodium-re 95.9 0.11 3.7E-06 55.2 15.3 33 263-295 517-549 (597)
12 2dfs_A Myosin-5A; myosin-V, in 95.8 0.28 9.6E-06 56.2 18.3 24 112-135 725-753 (1080)
13 3vkg_A Dynein heavy chain, cyt 95.6 1.9 6.4E-05 54.5 25.6 58 395-452 2013-2073(3245)
14 2v71_A Nuclear distribution pr 95.3 1.7 5.7E-05 39.5 20.8 43 267-309 93-135 (189)
15 3oja_B Anopheles plasmodium-re 95.1 0.22 7.6E-06 52.8 13.9 25 310-334 540-564 (597)
16 3oja_A Leucine-rich immune mol 94.8 0.9 3.1E-05 46.9 17.2 59 308-366 429-487 (487)
17 3o0z_A RHO-associated protein 94.7 2.2 7.5E-05 37.8 22.0 96 253-351 53-148 (168)
18 3okq_A BUD site selection prot 94.6 1.4 4.7E-05 37.9 14.6 72 203-274 17-95 (141)
19 2efr_A General control protein 94.4 2.4 8.1E-05 37.2 20.2 11 333-343 138-148 (155)
20 3o0z_A RHO-associated protein 94.2 2.8 9.7E-05 37.1 17.7 86 211-302 38-130 (168)
21 3vkg_A Dynein heavy chain, cyt 94.2 17 0.00059 46.1 30.6 13 89-101 1685-1697(3245)
22 3tnu_B Keratin, type II cytosk 93.8 0.4 1.4E-05 40.8 10.0 55 309-363 52-110 (129)
23 3u1c_A Tropomyosin alpha-1 cha 93.7 2.3 8E-05 34.5 14.0 23 236-258 4-26 (101)
24 3tnu_A Keratin, type I cytoske 93.6 0.34 1.1E-05 41.5 9.1 55 309-363 54-112 (131)
25 3ghg_A Fibrinogen alpha chain; 92.9 1.7 5.9E-05 44.9 14.3 10 315-324 146-155 (562)
26 2v66_B Nuclear distribution pr 92.5 3.4 0.00012 34.1 13.1 55 310-364 38-92 (111)
27 3mq9_A Bone marrow stromal ant 92.3 6 0.0002 40.4 18.1 37 259-295 433-469 (471)
28 2jee_A YIIU; FTSZ, septum, coi 92.0 2.6 8.9E-05 32.8 11.1 35 257-291 8-42 (81)
29 2lw1_A ABC transporter ATP-bin 92.0 1.5 5.1E-05 34.7 10.2 60 275-334 21-83 (89)
30 1m1j_B Fibrinogen beta chain; 91.3 5 0.00017 41.4 15.8 23 205-227 91-113 (464)
31 3hnw_A Uncharacterized protein 91.1 1.9 6.4E-05 37.2 10.6 48 248-295 68-115 (138)
32 2jee_A YIIU; FTSZ, septum, coi 90.9 4 0.00014 31.8 11.1 63 265-337 9-71 (81)
33 3oja_A Leucine-rich immune mol 90.1 4.3 0.00015 41.7 14.4 34 306-339 441-474 (487)
34 1fxk_C Protein (prefoldin); ar 89.8 4.1 0.00014 34.4 11.7 33 418-450 99-131 (133)
35 2v4h_A NF-kappa-B essential mo 89.7 7.4 0.00025 31.9 12.5 24 307-330 83-106 (110)
36 3a7p_A Autophagy protein 16; c 89.6 2.5 8.6E-05 36.7 10.0 45 268-314 102-146 (152)
37 3ajw_A Flagellar FLIJ protein; 89.0 9.8 0.00034 32.3 15.2 106 253-358 10-121 (150)
38 3ol1_A Vimentin; structural ge 88.9 4.6 0.00016 33.7 11.0 54 242-298 63-116 (119)
39 3nr7_A DNA-binding protein H-N 88.8 2.6 8.9E-05 33.2 8.8 47 264-310 33-79 (86)
40 2ve7_C Kinetochore protein NUF 88.7 3 0.0001 39.5 11.0 39 65-103 16-61 (250)
41 3hnw_A Uncharacterized protein 88.3 7.1 0.00024 33.5 12.1 64 236-299 70-133 (138)
42 3ghg_A Fibrinogen alpha chain; 88.3 7 0.00024 40.5 13.8 26 277-302 103-129 (562)
43 3u59_A Tropomyosin beta chain; 88.2 9 0.00031 30.9 14.1 44 256-299 10-53 (101)
44 1ic2_A Tropomyosin alpha chain 87.9 6.6 0.00023 30.3 10.6 11 240-250 5-15 (81)
45 1deq_A Fibrinogen (alpha chain 87.3 25 0.00085 35.0 17.7 14 386-399 217-230 (390)
46 3mq7_A Bone marrow stromal ant 87.3 3.5 0.00012 34.1 8.8 44 261-304 70-113 (121)
47 3s4r_A Vimentin; alpha-helix, 86.9 10 0.00035 30.2 13.7 24 205-228 14-37 (93)
48 3jsv_C NF-kappa-B essential mo 86.0 4.3 0.00015 32.4 8.5 28 307-334 61-88 (94)
49 1g6u_A Domain swapped dimer; d 84.9 6.2 0.00021 26.2 7.4 35 299-333 12-46 (48)
50 3htk_A Structural maintenance 84.6 7.1 0.00024 28.1 8.7 52 249-300 6-57 (60)
51 3q8t_A Beclin-1; autophagy, AT 84.6 14 0.00048 29.6 13.4 16 280-295 22-37 (96)
52 3mq7_A Bone marrow stromal ant 84.5 16 0.00054 30.2 14.2 36 285-323 73-108 (121)
53 1x79_B RAB GTPase binding effe 84.2 16 0.00056 30.1 11.8 65 260-330 36-100 (112)
54 1m1j_C Fibrinogen gamma chain; 84.2 20 0.00067 36.4 14.7 14 214-227 38-51 (409)
55 2v4h_A NF-kappa-B essential mo 84.2 16 0.00055 29.9 12.1 42 293-337 65-106 (110)
56 1ic2_A Tropomyosin alpha chain 84.1 13 0.00043 28.7 11.5 67 269-338 6-72 (81)
57 2yy0_A C-MYC-binding protein; 84.0 1.3 4.4E-05 31.7 4.2 44 295-338 7-50 (53)
58 3i00_A HIP-I, huntingtin-inter 83.9 7.1 0.00024 32.7 9.5 40 261-300 39-78 (120)
59 2zdi_C Prefoldin subunit alpha 83.7 5.4 0.00019 34.5 9.1 33 418-450 109-141 (151)
60 1deq_A Fibrinogen (alpha chain 83.5 14 0.00049 36.7 12.9 8 294-301 124-131 (390)
61 1l8d_A DNA double-strand break 83.1 17 0.00058 29.4 12.4 32 264-295 12-43 (112)
62 3qh9_A Liprin-beta-2; coiled-c 83.1 14 0.00049 28.5 10.8 55 246-300 24-78 (81)
63 2oqq_A Transcription factor HY 83.0 5.4 0.00018 26.8 6.5 39 255-300 3-41 (42)
64 1ci6_A Transcription factor AT 82.9 6.9 0.00023 28.8 8.1 47 408-454 17-63 (63)
65 1f5n_A Interferon-induced guan 82.7 40 0.0014 35.8 17.1 18 139-156 287-304 (592)
66 3nmd_A CGMP dependent protein 82.6 6.7 0.00023 29.8 7.8 31 416-446 35-65 (72)
67 3tnu_B Keratin, type II cytosk 82.3 15 0.00052 30.8 11.1 12 350-361 114-125 (129)
68 1m1j_A Fibrinogen alpha subuni 82.2 23 0.00079 36.1 14.0 13 215-227 66-78 (491)
69 3nmd_A CGMP dependent protein 82.1 5 0.00017 30.5 7.0 47 409-455 21-67 (72)
70 4gkw_A Spindle assembly abnorm 82.0 22 0.00076 30.0 20.4 100 258-357 49-148 (167)
71 3iox_A AGI/II, PA; alpha helix 81.2 53 0.0018 33.8 16.7 38 264-301 29-66 (497)
72 2eqb_B RAB guanine nucleotide 80.9 20 0.00068 28.8 12.3 14 282-295 46-59 (97)
73 3tnu_A Keratin, type I cytoske 80.9 17 0.00059 30.6 11.1 13 350-362 116-128 (131)
74 1t2k_D Cyclic-AMP-dependent tr 80.9 8.5 0.00029 28.0 7.9 45 407-451 15-59 (61)
75 2v66_B Nuclear distribution pr 80.1 24 0.00081 29.1 14.2 47 264-310 37-83 (111)
76 3fpp_A Macrolide-specific effl 79.7 8 0.00027 37.5 9.8 70 265-334 72-141 (341)
77 2b9c_A Striated-muscle alpha t 79.5 17 0.00057 31.5 10.6 27 317-343 83-109 (147)
78 1m1j_C Fibrinogen gamma chain; 79.4 24 0.00082 35.7 13.3 65 207-271 48-114 (409)
79 2wt7_A Proto-oncogene protein 77.8 12 0.00041 27.4 7.9 46 407-452 16-61 (63)
80 3iv1_A Tumor susceptibility ge 76.5 17 0.00057 28.0 8.5 36 238-273 29-64 (78)
81 3jsv_C NF-kappa-B essential mo 75.8 22 0.00076 28.3 9.2 34 306-339 53-86 (94)
82 4dk0_A Putative MACA; alpha-ha 75.3 8.3 0.00028 37.8 8.5 67 268-334 76-142 (369)
83 3a7o_A Autophagy protein 16; c 75.3 23 0.0008 26.5 8.6 41 269-319 18-58 (75)
84 3uul_A Utrophin; spectrin repe 75.2 29 0.001 27.5 10.8 19 245-263 6-24 (118)
85 2dq0_A Seryl-tRNA synthetase; 74.8 11 0.00038 38.7 9.6 65 269-333 31-95 (455)
86 3ghg_C Fibrinogen gamma chain; 74.8 58 0.002 32.9 14.5 39 231-269 74-112 (411)
87 3swk_A Vimentin; cytoskeleton, 73.9 15 0.00052 28.7 8.0 36 316-351 44-79 (86)
88 1gk4_A Vimentin; intermediate 73.7 25 0.00084 27.3 9.2 33 330-362 28-60 (84)
89 3a7p_A Autophagy protein 16; c 73.0 31 0.0011 29.9 10.3 43 256-298 69-111 (152)
90 2i1j_A Moesin; FERM, coiled-co 72.8 6.4 0.00022 41.8 7.3 96 231-329 325-427 (575)
91 1t6f_A Geminin; coiled-coil, c 72.6 8.1 0.00028 25.0 4.8 28 270-297 8-35 (37)
92 3qne_A Seryl-tRNA synthetase, 72.4 8.6 0.00029 39.9 7.9 51 280-330 44-94 (485)
93 3uun_A Dystrophin; triple heli 71.9 35 0.0012 27.0 12.5 18 246-263 7-24 (119)
94 2efr_A General control protein 71.8 50 0.0017 28.7 21.5 32 235-266 36-67 (155)
95 1ses_A Seryl-tRNA synthetase; 71.8 19 0.00066 36.5 10.4 63 269-333 28-90 (421)
96 3q8t_A Beclin-1; autophagy, AT 71.7 36 0.0012 27.1 13.7 23 273-295 71-93 (96)
97 3okq_A BUD site selection prot 71.6 47 0.0016 28.4 14.9 67 278-344 23-94 (141)
98 1jnm_A Proto-oncogene C-JUN; B 71.4 8.3 0.00028 28.2 5.6 44 408-451 16-59 (62)
99 4emc_A Monopolin complex subun 71.3 6.9 0.00024 35.2 6.0 51 401-451 7-57 (190)
100 1t3j_A Mitofusin 1; coiled coi 71.3 17 0.00058 29.1 7.6 45 208-255 48-92 (96)
101 3efg_A Protein SLYX homolog; x 71.2 12 0.0004 28.8 6.6 48 405-452 12-59 (78)
102 1go4_E MAD1 (mitotic arrest de 70.8 18 0.00063 29.2 7.8 32 270-301 13-44 (100)
103 1cii_A Colicin IA; bacteriocin 70.5 99 0.0034 31.6 19.2 91 235-339 357-447 (602)
104 1gd2_E Transcription factor PA 70.1 8.5 0.00029 29.1 5.4 7 258-264 32-38 (70)
105 1ik9_A DNA repair protein XRCC 70.1 66 0.0023 29.4 12.6 54 212-271 144-198 (213)
106 3cvf_A Homer-3, homer protein 69.4 14 0.00048 28.6 6.6 51 402-452 8-58 (79)
107 2k48_A Nucleoprotein; viral pr 69.0 44 0.0015 27.0 9.6 59 396-454 35-101 (107)
108 3mq9_A Bone marrow stromal ant 68.9 1E+02 0.0035 31.1 15.6 16 142-157 199-214 (471)
109 1wt6_A Myotonin-protein kinase 68.7 29 0.00098 26.8 8.1 30 258-287 41-70 (81)
110 1fxk_A Prefoldin; archaeal pro 68.4 43 0.0015 26.6 11.3 20 204-223 12-31 (107)
111 2qyw_A Vesicle transport throu 68.3 45 0.0015 26.8 11.0 30 299-328 70-99 (102)
112 2f1m_A Acriflavine resistance 68.2 27 0.00094 32.5 10.1 56 275-330 66-121 (277)
113 2zqm_A Prefoldin beta subunit 68.2 46 0.0016 26.8 11.3 22 204-225 17-38 (117)
114 3lay_A Zinc resistance-associa 68.1 47 0.0016 29.5 10.8 39 287-325 93-131 (175)
115 3s4r_A Vimentin; alpha-helix, 67.8 44 0.0015 26.4 12.0 11 260-270 28-38 (93)
116 1f5n_A Interferon-induced guan 67.5 1.3E+02 0.0045 31.8 17.9 39 283-322 544-582 (592)
117 1jcd_A Major outer membrane li 67.5 30 0.001 24.5 7.6 41 262-302 11-51 (52)
118 2yy0_A C-MYC-binding protein; 67.4 11 0.00036 26.9 5.2 30 424-453 22-51 (53)
119 3cve_A Homer protein homolog 1 66.8 38 0.0013 25.6 8.4 47 406-452 6-52 (72)
120 3efg_A Protein SLYX homolog; x 66.5 18 0.00063 27.7 6.8 45 256-300 15-59 (78)
121 2nrj_A HBL B protein; enteroto 66.4 1E+02 0.0035 30.2 18.4 52 307-358 226-280 (346)
122 1wle_A Seryl-tRNA synthetase; 65.7 30 0.001 36.0 10.4 26 308-333 117-142 (501)
123 2zqm_A Prefoldin beta subunit 64.3 55 0.0019 26.3 10.4 20 317-336 80-99 (117)
124 2i1j_A Moesin; FERM, coiled-co 63.8 19 0.00065 38.1 8.7 13 175-188 280-292 (575)
125 2ocy_A RAB guanine nucleotide 63.2 76 0.0026 27.6 17.3 14 282-295 78-91 (154)
126 2pnv_A Small conductance calci 63.0 18 0.00061 24.6 5.4 33 421-453 9-41 (43)
127 1x79_B RAB GTPase binding effe 62.9 63 0.0021 26.6 12.7 58 238-298 10-67 (112)
128 2xdj_A Uncharacterized protein 62.7 49 0.0017 25.7 8.6 36 416-451 22-57 (83)
129 3he5_B Synzip2; heterodimeric 62.5 22 0.00076 23.9 5.6 22 243-264 19-40 (52)
130 3htk_A Structural maintenance 62.5 39 0.0013 24.0 8.1 47 246-292 10-56 (60)
131 1a93_B MAX protein, coiled coi 62.4 12 0.00039 24.2 4.0 28 312-339 5-32 (34)
132 3he5_B Synzip2; heterodimeric 62.2 31 0.0011 23.2 6.3 34 414-447 17-50 (52)
133 3viq_B Mating-type switching p 62.1 11 0.00038 29.5 4.8 14 348-361 40-53 (85)
134 4fi5_A Nucleoprotein; structur 61.9 65 0.0022 26.4 9.5 58 398-455 24-89 (113)
135 2eqb_B RAB guanine nucleotide 61.7 60 0.0021 26.0 12.2 32 241-272 26-57 (97)
136 1l8d_A DNA double-strand break 61.7 61 0.0021 26.0 12.8 28 418-445 75-102 (112)
137 3ghg_B Fibrinogen beta chain; 60.9 95 0.0032 31.8 12.7 28 247-274 94-121 (461)
138 1gd2_E Transcription factor PA 59.9 27 0.00093 26.2 6.5 41 414-454 29-69 (70)
139 1gmj_A ATPase inhibitor; coile 59.7 34 0.0012 26.6 7.1 32 395-426 39-70 (84)
140 2xzr_A Immunoglobulin-binding 59.6 65 0.0022 25.6 12.8 55 246-300 53-107 (114)
141 1x8y_A Lamin A/C; structural p 59.4 20 0.00069 28.0 6.0 30 332-361 32-61 (86)
142 2lw1_A ABC transporter ATP-bin 59.3 57 0.002 25.3 8.7 29 205-233 20-48 (89)
143 3etw_A Adhesin A; antiparallel 59.3 76 0.0026 26.3 12.4 18 295-312 87-104 (119)
144 1ci6_A Transcription factor AT 59.0 46 0.0016 24.2 7.6 33 266-298 27-59 (63)
145 4dzn_A Coiled-coil peptide CC- 59.0 28 0.00097 21.3 5.1 28 423-450 4-31 (33)
146 2dq3_A Seryl-tRNA synthetase; 58.3 11 0.00038 38.3 5.5 64 269-332 30-93 (425)
147 3d5a_X RF1, peptide chain rele 58.1 92 0.0031 30.8 11.8 42 215-256 4-51 (354)
148 2w6a_A ARF GTPase-activating p 57.5 51 0.0018 23.8 7.6 39 258-296 23-61 (63)
149 4dci_A Uncharacterized protein 57.3 95 0.0032 26.8 10.8 34 273-306 33-66 (150)
150 2akf_A Coronin-1A; coiled coil 57.3 30 0.001 21.3 5.0 25 245-269 3-27 (32)
151 1go4_E MAD1 (mitotic arrest de 57.2 57 0.002 26.2 8.3 17 283-299 75-91 (100)
152 2l5g_B Putative uncharacterize 57.0 29 0.001 23.3 5.4 25 309-333 11-35 (42)
153 3cve_A Homer protein homolog 1 56.9 61 0.0021 24.5 10.3 40 260-299 12-51 (72)
154 1uii_A Geminin; human, DNA rep 56.6 67 0.0023 24.9 8.6 46 399-444 31-76 (83)
155 1a93_B MAX protein, coiled coi 56.5 18 0.00063 23.2 4.2 27 422-448 8-34 (34)
156 4fla_A Regulation of nuclear P 56.5 98 0.0033 26.7 12.8 7 185-191 14-20 (152)
157 3m91_A Proteasome-associated A 55.6 51 0.0017 23.2 7.2 37 411-447 13-49 (51)
158 1lwu_C Fibrinogen gamma chain; 55.6 32 0.0011 33.7 8.0 29 241-269 5-33 (323)
159 2p22_A Suppressor protein STP2 55.5 1.1E+02 0.0038 27.1 10.9 40 237-276 45-84 (174)
160 2ocy_A RAB guanine nucleotide 55.1 1.1E+02 0.0036 26.7 20.4 35 416-450 110-144 (154)
161 2wt7_B Transcription factor MA 53.9 65 0.0022 25.4 8.0 42 413-454 47-88 (90)
162 4dnd_A Syntaxin-10, SYN10; str 53.9 69 0.0023 26.9 8.8 57 396-452 63-129 (130)
163 2ke4_A CDC42-interacting prote 53.7 84 0.0029 25.1 10.7 27 262-288 15-41 (98)
164 3iox_A AGI/II, PA; alpha helix 53.7 2E+02 0.007 29.5 15.3 11 287-297 45-55 (497)
165 4h22_A Leucine-rich repeat fli 53.1 89 0.003 25.2 9.9 7 315-321 66-72 (103)
166 2pq8_A Probable histone acetyl 52.7 4.4 0.00015 38.8 1.2 48 52-99 179-232 (278)
167 2ic6_A Nucleocapsid protein; h 52.4 77 0.0026 24.3 9.6 57 398-454 7-71 (78)
168 2ve7_A Kinetochore protein HEC 52.4 1.4E+02 0.0047 28.8 12.1 46 108-157 14-59 (315)
169 3ol1_A Vimentin; structural ge 52.3 97 0.0033 25.5 15.5 14 289-302 68-81 (119)
170 3cvf_A Homer-3, homer protein 52.2 78 0.0027 24.3 10.3 40 260-299 18-57 (79)
171 1t3j_A Mitofusin 1; coiled coi 51.6 90 0.0031 24.9 9.0 57 394-454 34-90 (96)
172 2w83_C C-JUN-amino-terminal ki 50.9 80 0.0027 24.0 10.4 40 306-345 36-75 (77)
173 2xnx_M M protein, M1-BC1; cell 50.1 45 0.0015 28.6 7.0 16 317-332 118-133 (146)
174 2ke4_A CDC42-interacting prote 49.9 69 0.0023 25.6 7.8 29 235-263 63-91 (98)
175 2ic9_A Nucleocapsid protein; h 49.7 97 0.0033 24.7 9.5 57 398-454 7-71 (96)
176 4dyl_A Tyrosine-protein kinase 49.1 2.1E+02 0.0072 28.4 25.5 46 381-426 293-342 (406)
177 3lay_A Zinc resistance-associa 49.0 96 0.0033 27.5 9.4 9 296-304 137-145 (175)
178 2l5g_B Putative uncharacterize 48.8 38 0.0013 22.8 4.9 32 312-343 7-38 (42)
179 2oqq_A Transcription factor HY 48.3 59 0.002 21.8 6.2 35 417-451 6-40 (42)
180 2e7s_A RAB guanine nucleotide 48.0 29 0.00097 29.6 5.4 42 237-278 42-83 (135)
181 1vcs_A Vesicle transport throu 47.7 29 0.001 27.9 5.3 35 299-333 59-93 (102)
182 3swk_A Vimentin; cytoskeleton, 47.1 98 0.0033 24.0 11.8 19 287-305 46-64 (86)
183 3nr7_A DNA-binding protein H-N 46.9 59 0.002 25.4 6.8 41 415-455 25-65 (86)
184 2p22_C Protein SRN2; endosome, 46.8 1.6E+02 0.0055 26.4 14.7 50 303-358 123-174 (192)
185 1nlw_A MAD protein, MAX dimeri 46.5 41 0.0014 25.8 5.8 30 250-279 42-71 (80)
186 2b9c_A Striated-muscle alpha t 46.4 1.4E+02 0.0048 25.6 14.5 61 238-298 49-109 (147)
187 4e61_A Protein BIM1; EB1-like 45.9 48 0.0016 27.0 6.2 26 429-454 19-44 (106)
188 3ra3_B P2F; coiled coil domain 45.7 19 0.00065 21.3 2.7 25 425-449 4-28 (28)
189 3qh9_A Liprin-beta-2; coiled-c 45.5 1E+02 0.0035 23.7 9.6 23 269-291 54-76 (81)
190 1jnm_A Proto-oncogene C-JUN; B 45.2 28 0.00095 25.3 4.4 11 285-295 45-55 (62)
191 3s9g_A Protein hexim1; cyclin 45.2 1.2E+02 0.004 24.3 9.9 21 268-288 64-84 (104)
192 3ghg_B Fibrinogen beta chain; 44.8 2.2E+02 0.0076 29.1 12.4 13 262-274 95-107 (461)
193 1bb1_B Designed, thermostable 44.6 55 0.0019 20.4 5.4 30 270-299 3-32 (36)
194 1fxk_C Protein (prefoldin); ar 44.2 79 0.0027 26.1 7.8 43 256-298 89-131 (133)
195 1wlq_A Geminin; coiled-coil; 2 44.2 1.1E+02 0.0037 23.7 8.1 44 399-442 23-66 (83)
196 3m48_A General control protein 44.1 25 0.00085 22.4 3.3 18 283-300 14-31 (33)
197 1zxa_A CGMP-dependent protein 43.9 34 0.0012 25.5 4.7 39 262-300 18-56 (67)
198 2dgc_A Protein (GCN4); basic d 43.5 54 0.0019 23.9 5.7 33 410-442 26-58 (63)
199 3uux_B Mitochondrial division 43.5 1.8E+02 0.006 27.1 10.4 51 244-294 173-223 (242)
200 2c5k_T Syntaxin TLG1, T-snare 43.3 1.2E+02 0.0041 23.9 8.5 25 305-329 66-90 (95)
201 1nkp_B MAX protein, MYC proto- 43.1 42 0.0014 25.6 5.4 28 250-277 42-69 (83)
202 2j9w_A VPS28, VPS28-PROV prote 43.0 30 0.001 28.0 4.6 91 88-188 6-98 (102)
203 2xus_A Breast cancer metastasi 42.9 61 0.0021 22.6 5.5 43 404-448 3-45 (49)
204 1lq7_A Alpha3W; three helix bu 42.8 38 0.0013 23.9 4.4 14 233-246 24-37 (67)
205 2j9u_A VPS28, vacuolar protein 42.8 26 0.0009 28.0 4.2 88 89-188 4-93 (96)
206 1t2k_D Cyclic-AMP-dependent tr 42.7 90 0.0031 22.3 9.4 19 280-298 40-58 (61)
207 1kd8_B GABH BLL, GCN4 acid bas 42.6 52 0.0018 21.3 4.6 16 285-300 17-32 (36)
208 2lem_A Apolipoprotein A-I; lip 42.6 33 0.0011 31.4 5.5 21 251-271 12-32 (216)
209 1nlw_A MAD protein, MAX dimeri 42.3 79 0.0027 24.1 6.8 28 418-445 51-78 (80)
210 2c5k_T Syntaxin TLG1, T-snare 42.1 47 0.0016 26.4 5.6 28 426-453 66-93 (95)
211 2e7s_A RAB guanine nucleotide 42.0 1.3E+02 0.0044 25.5 8.6 14 282-295 66-79 (135)
212 2wt7_B Transcription factor MA 42.0 1.3E+02 0.0043 23.7 8.5 21 303-323 17-37 (90)
213 1d7m_A Cortexillin I; coiled-c 41.8 1.2E+02 0.0043 23.7 8.3 63 288-353 2-64 (101)
214 2bsg_A Fibritin; viral protein 41.7 95 0.0032 31.9 9.1 37 413-449 240-281 (487)
215 4emc_A Monopolin complex subun 41.6 88 0.003 28.0 7.8 36 260-295 11-46 (190)
216 4dnd_A Syntaxin-10, SYN10; str 41.5 1.6E+02 0.0053 24.7 12.9 26 302-327 100-125 (130)
217 2wvr_A Geminin; DNA replicatio 41.5 1.2E+02 0.004 27.5 8.6 46 399-444 100-145 (209)
218 4etp_A Kinesin-like protein KA 41.4 68 0.0023 32.2 8.1 25 236-260 5-29 (403)
219 1hjb_A Ccaat/enhancer binding 41.2 1.3E+02 0.0043 23.5 8.6 39 413-451 35-73 (87)
220 2pnv_A Small conductance calci 40.8 43 0.0015 22.7 4.4 30 255-284 9-38 (43)
221 1uo4_A General control protein 40.8 33 0.0011 21.9 3.5 19 282-300 14-32 (34)
222 3plt_A Sphingolipid long chain 40.7 2E+02 0.0068 26.6 10.4 14 179-192 49-62 (234)
223 1wt6_A Myotonin-protein kinase 39.9 1.3E+02 0.0043 23.2 9.5 42 413-454 30-71 (81)
224 2zxx_A Geminin; coiled-coil, c 39.8 1.3E+02 0.0043 23.1 7.7 43 399-441 19-61 (79)
225 1gqe_A Release factor 2, RF2; 39.5 2.9E+02 0.01 27.3 12.1 18 350-367 144-161 (365)
226 1nkp_B MAX protein, MYC proto- 39.1 60 0.0021 24.7 5.7 30 418-447 51-80 (83)
227 2d4y_A HAP1, flagellar HOOK-as 38.9 1.9E+02 0.0064 29.3 11.1 18 416-433 227-244 (463)
228 3q0x_A Centriole protein; cent 38.7 1.4E+02 0.0048 27.5 9.1 55 392-446 163-217 (228)
229 2wuj_A Septum site-determining 38.4 40 0.0014 24.1 4.2 6 381-386 4-9 (57)
230 3gn4_A Myosin-VI; unconvention 38.3 66 0.0023 27.7 6.3 64 244-324 75-138 (148)
231 3j0f_I E2 envelope glycoprotei 38.2 8.7 0.0003 38.5 0.8 15 131-145 340-354 (423)
232 2dgc_A Protein (GCN4); basic d 38.0 45 0.0015 24.4 4.5 36 417-452 26-61 (63)
233 3c3f_A Alpha/beta peptide with 37.4 64 0.0022 20.5 4.4 18 282-299 14-31 (34)
234 3to7_A Histone acetyltransfera 37.0 7.6 0.00026 37.0 0.2 48 52-99 179-232 (276)
235 2yew_C E2 envelope glycoprotei 36.7 8.5 0.00029 38.5 0.5 14 131-144 338-351 (421)
236 1kd8_A GABH AIV, GCN4 acid bas 36.3 51 0.0017 21.3 3.9 14 286-299 18-31 (36)
237 3hhm_B NISH2 P85alpha; PI3KCA, 36.2 3.3E+02 0.011 26.9 13.2 67 246-312 203-276 (373)
238 3iv1_A Tumor susceptibility ge 36.2 1.4E+02 0.0049 22.8 10.0 55 243-297 20-74 (78)
239 3uun_A Dystrophin; triple heli 36.1 1.5E+02 0.0052 23.0 14.2 18 238-255 40-57 (119)
240 3j0c_B E2 envelope glycoprotei 36.1 8.6 0.00029 38.5 0.4 14 131-144 340-353 (423)
241 4ani_A Protein GRPE; chaperone 36.0 2.5E+02 0.0086 25.5 13.0 21 347-367 138-158 (213)
242 3r6n_A Desmoplakin; spectrin r 35.9 3.6E+02 0.012 27.3 21.4 126 204-339 137-267 (450)
243 2pms_C Pneumococcal surface pr 35.8 36 0.0012 28.5 4.1 72 217-288 51-122 (125)
244 4f6o_A Metacaspase-1; rossmann 35.7 45 0.0016 32.9 5.6 50 52-104 67-126 (350)
245 4hpq_C ATG17, KLTH0D15642P; au 35.5 3.6E+02 0.012 27.1 22.9 87 212-298 206-292 (413)
246 1zvu_A Topoisomerase IV subuni 35.4 4.2E+02 0.014 28.7 13.3 47 314-360 402-448 (716)
247 2yko_A LINE-1 ORF1P; RNA-bindi 35.4 70 0.0024 29.7 6.4 48 257-304 8-55 (233)
248 3r2p_A Apolipoprotein A-I; amp 35.3 2.3E+02 0.0078 24.8 12.3 71 251-323 14-87 (185)
249 1fxk_A Prefoldin; archaeal pro 35.2 1.6E+02 0.0055 23.0 10.9 23 317-339 75-97 (107)
250 2p22_C Protein SRN2; endosome, 35.2 2.4E+02 0.0084 25.1 11.8 48 286-334 138-185 (192)
251 3trt_A Vimentin; cytoskeleton, 35.1 1.4E+02 0.0047 22.2 9.8 59 394-452 7-73 (77)
252 2wt7_A Proto-oncogene protein 34.9 1.3E+02 0.0043 21.7 9.8 14 285-298 46-59 (63)
253 2xfc_B E2 envelope glycoprotei 34.8 8.5 0.00029 38.5 0.1 17 131-147 340-356 (423)
254 2b5u_A Colicin E3; high resolu 34.4 4E+02 0.014 27.4 17.9 60 236-295 316-375 (551)
255 1nkp_A C-MYC, MYC proto-oncoge 34.2 1.2E+02 0.004 23.6 6.7 27 250-276 47-73 (88)
256 2xdj_A Uncharacterized protein 33.9 1.6E+02 0.0055 22.7 9.7 51 406-456 19-69 (83)
257 2oxj_A Hybrid alpha/beta pepti 33.7 79 0.0027 20.2 4.4 17 283-299 15-31 (34)
258 1hjb_A Ccaat/enhancer binding 33.6 1.7E+02 0.0058 22.8 7.9 28 272-299 46-73 (87)
259 1gu4_A CAAT/enhancer binding p 33.3 1.5E+02 0.0052 22.6 7.0 35 414-448 36-70 (78)
260 3q0x_A Centriole protein; cent 33.2 2E+02 0.0069 26.5 9.2 60 395-454 159-218 (228)
261 3he5_A Synzip1; heterodimeric 33.1 1.1E+02 0.0036 20.3 7.5 11 288-298 36-46 (49)
262 2igp_A Retinoblastoma-associat 32.7 39 0.0013 28.0 3.9 45 109-157 17-61 (120)
263 2xv5_A Lamin-A/C; structural p 32.5 1.6E+02 0.0055 22.2 8.0 52 312-363 3-57 (74)
264 3vmx_A Voltage-gated hydrogen 32.4 1.2E+02 0.0043 20.9 7.2 14 288-301 30-43 (48)
265 2zdi_C Prefoldin subunit alpha 32.3 1.1E+02 0.0037 26.0 6.9 45 257-301 100-144 (151)
266 2xnx_M M protein, M1-BC1; cell 32.3 1.8E+02 0.0062 24.9 7.9 16 241-256 66-81 (146)
267 2efk_A CDC42-interacting prote 32.2 3.1E+02 0.01 25.4 19.2 161 195-360 90-259 (301)
268 3m9b_A Proteasome-associated A 31.8 65 0.0022 30.2 5.6 43 415-457 55-97 (251)
269 4gkw_A Spindle assembly abnorm 31.8 2.3E+02 0.0079 23.8 20.8 26 307-332 60-85 (167)
270 1s94_A S-syntaxin; three helix 31.5 2.5E+02 0.0087 24.2 13.4 22 344-365 128-149 (180)
271 3abh_A Pacsin2, protein kinase 31.2 3.3E+02 0.011 25.5 19.8 21 302-322 187-207 (312)
272 1zbt_A RF-1, peptide chain rel 31.2 1.3E+02 0.0043 30.0 7.9 43 214-256 17-65 (371)
273 4ad8_A DNA repair protein RECN 31.1 4.3E+02 0.015 26.8 16.2 36 212-247 205-240 (517)
274 3u06_A Protein claret segregat 31.1 1.3E+02 0.0046 30.2 8.3 31 265-295 27-57 (412)
275 2no2_A HIP-I, huntingtin-inter 30.4 2.1E+02 0.0073 23.0 15.9 9 264-272 31-39 (107)
276 3viq_B Mating-type switching p 30.1 1.9E+02 0.0066 22.4 9.8 39 203-241 4-42 (85)
277 3ljm_A Coil Ser L9C; de novo d 29.6 95 0.0033 18.7 4.3 17 208-224 9-25 (31)
278 1vf7_A Multidrug resistance pr 29.5 2.4E+02 0.0084 27.2 9.9 48 283-330 88-135 (369)
279 1u2m_A Histone-like protein HL 29.5 31 0.0011 29.0 2.8 27 302-328 55-81 (143)
280 2dul_A N(2),N(2)-dimethylguano 29.5 1.7E+02 0.0059 28.8 8.8 81 53-149 279-375 (378)
281 3i00_A HIP-I, huntingtin-inter 29.3 2.4E+02 0.0082 23.2 9.9 41 394-434 20-60 (120)
282 3k29_A Putative uncharacterize 29.3 2.9E+02 0.0099 24.2 16.9 13 332-344 126-138 (169)
283 3lnn_A Membrane fusion protein 28.8 1.1E+02 0.0036 29.5 7.0 59 276-334 98-156 (359)
284 1kd8_A GABH AIV, GCN4 acid bas 28.8 83 0.0028 20.3 3.9 24 418-441 5-28 (36)
285 3l4q_C Phosphatidylinositol 3- 28.6 3E+02 0.01 24.1 14.5 38 274-311 129-166 (170)
286 2k48_A Nucleoprotein; viral pr 28.5 2.3E+02 0.008 22.8 9.1 38 271-311 37-74 (107)
287 3vp9_A General transcriptional 28.3 1.2E+02 0.004 24.1 5.7 9 291-299 76-84 (92)
288 3aco_A Pacsin2, protein kinase 28.3 4E+02 0.014 25.4 20.3 23 303-325 188-210 (350)
289 2wq1_A General control protein 28.2 1.2E+02 0.004 19.2 5.0 15 285-299 16-30 (33)
290 2l7b_A Apolipoprotein E, APO-E 28.1 4E+02 0.014 25.5 10.9 7 174-180 40-46 (307)
291 2wvr_A Geminin; DNA replicatio 28.1 1.8E+02 0.0061 26.3 7.5 27 274-300 120-146 (209)
292 1kd8_B GABH BLL, GCN4 acid bas 28.0 1.1E+02 0.0038 19.7 4.4 21 428-448 8-28 (36)
293 2zxx_A Geminin; coiled-coil, c 27.5 1.5E+02 0.0051 22.7 6.0 24 274-297 39-62 (79)
294 3m9b_A Proteasome-associated A 27.2 80 0.0027 29.7 5.3 19 277-295 76-94 (251)
295 4ae4_A Ubiquitin-associated pr 26.9 5.2 0.00018 33.4 -2.6 86 64-155 7-114 (118)
296 1yzm_A FYVE-finger-containing 26.8 1.7E+02 0.0057 20.5 5.8 16 414-429 28-43 (51)
297 1nfn_A Apolipoprotein E3; lipi 26.7 3.3E+02 0.011 24.0 12.7 29 251-279 31-61 (191)
298 3s9g_A Protein hexim1; cyclin 26.5 2.5E+02 0.0084 22.4 9.6 16 280-295 69-84 (104)
299 1jcd_A Major outer membrane li 26.4 1.7E+02 0.0058 20.5 7.9 40 414-453 11-50 (52)
300 2wuj_A Septum site-determining 26.3 90 0.0031 22.2 4.4 20 276-295 34-53 (57)
301 3v1a_A Computational design, M 26.2 1.6E+02 0.0056 20.3 5.8 18 435-452 27-44 (48)
302 1j1d_B Troponin T, TNT; THIN f 26.1 1.6E+02 0.0056 23.8 6.4 44 397-440 46-89 (106)
303 3caz_A BAR protein; thermo-aci 26.1 3.5E+02 0.012 24.1 10.7 30 235-264 106-135 (294)
304 1ytz_T Troponin T; muscle, THI 26.1 1.5E+02 0.0051 24.1 6.2 44 397-440 46-89 (107)
305 2bni_A General control protein 25.6 82 0.0028 20.1 3.4 16 284-299 16-31 (34)
306 1ytz_T Troponin T; muscle, THI 25.6 2E+02 0.0068 23.3 6.9 44 404-447 46-89 (107)
307 1z0k_B FYVE-finger-containing 25.5 1.7E+02 0.0058 21.8 5.8 19 414-432 46-64 (69)
308 1gu4_A CAAT/enhancer binding p 25.5 1.9E+02 0.0066 22.0 6.4 27 270-296 44-70 (78)
309 2bzb_A Conserved domain protei 25.5 1.4E+02 0.0046 21.8 5.3 34 286-319 8-41 (62)
310 2r2v_A GCN4 leucine zipper; co 25.4 1.4E+02 0.0047 19.1 4.5 18 283-300 15-32 (34)
311 3fb2_A Spectrin alpha chain, b 25.1 3.5E+02 0.012 23.7 16.8 37 303-339 148-184 (218)
312 2hy6_A General control protein 25.1 1.3E+02 0.0046 19.1 4.4 16 285-300 17-32 (34)
313 1avy_A Fibritin, gpwac M; bact 25.0 1.6E+02 0.0054 22.0 5.5 32 418-449 12-43 (74)
314 3muu_A Structural polyprotein; 25.0 17 0.00058 38.7 0.3 14 131-144 340-353 (750)
315 1t6f_A Geminin; coiled-coil, c 25.0 1.4E+02 0.0049 19.2 5.3 21 427-447 13-33 (37)
316 2ou2_A Histone acetyltransfera 25.0 19 0.00063 34.5 0.6 25 52-76 177-204 (280)
317 1z0j_B FYVE-finger-containing 24.7 1.9E+02 0.0067 20.8 5.8 16 436-451 36-51 (59)
318 2aze_A Transcription factor DP 24.5 2.2E+02 0.0076 24.6 7.3 32 304-335 2-33 (155)
319 2v0o_A FCHO2, FCH domain only 24.0 4.1E+02 0.014 24.1 25.5 40 277-320 137-176 (276)
320 1j1d_C Troponin I, TNI; THIN f 24.0 2.1E+02 0.007 24.2 6.9 46 318-363 62-107 (133)
321 3gp4_A Transcriptional regulat 23.9 3.2E+02 0.011 22.8 9.1 63 392-454 63-128 (142)
322 1wiv_A UBP14, ubiquitin-specif 23.8 7.9 0.00027 29.4 -1.8 53 97-154 6-66 (73)
323 1uii_A Geminin; human, DNA rep 23.8 2.5E+02 0.0087 21.6 7.5 24 275-298 52-75 (83)
324 1q08_A Zn(II)-responsive regul 23.6 2.5E+02 0.0084 21.4 8.7 20 297-316 10-29 (99)
325 1j1d_C Troponin I, TNI; THIN f 23.6 2.3E+02 0.008 23.8 7.1 49 396-444 61-109 (133)
326 1zxa_A CGMP-dependent protein 22.9 1.4E+02 0.0049 22.1 5.0 24 424-447 28-51 (67)
327 3uul_A Utrophin; spectrin repe 22.9 2.6E+02 0.0091 21.5 15.5 22 300-321 71-92 (118)
328 1dh3_A Transcription factor CR 22.8 2E+02 0.0069 20.2 6.3 28 413-440 21-48 (55)
329 2c0s_A Conserved domain protei 22.7 2.3E+02 0.0077 20.7 6.7 36 286-321 8-43 (64)
330 3lbx_A Spectrin alpha chain, e 22.7 3.5E+02 0.012 22.8 8.5 31 307-337 88-118 (161)
331 3haj_A Human pacsin2 F-BAR; pa 22.5 6.1E+02 0.021 25.6 24.3 23 302-324 180-202 (486)
332 2ahq_A Sigma-54, RNA polymeras 22.4 63 0.0021 24.6 3.0 22 51-80 33-55 (76)
333 3gpv_A Transcriptional regulat 22.2 2.1E+02 0.0071 24.1 6.8 31 418-448 99-129 (148)
334 1lrz_A FEMA, factor essential 22.1 1.9E+02 0.0064 28.8 7.6 22 56-77 81-102 (426)
335 3onj_A T-snare VTI1; helix, HA 21.9 2.9E+02 0.0098 21.6 11.2 27 305-331 63-90 (97)
336 2c0s_A Conserved domain protei 21.7 2.2E+02 0.0076 20.7 5.8 46 318-364 5-51 (64)
337 1skn_P DNA-binding domain of S 21.3 3E+02 0.01 21.6 7.1 40 291-330 40-79 (92)
338 1cii_A Colicin IA; bacteriocin 21.0 6.8E+02 0.023 25.6 16.6 63 271-336 358-420 (602)
339 1cxz_B Protein (PKN); protein- 21.0 2.4E+02 0.0082 21.9 6.1 20 276-295 63-82 (86)
340 1j1d_B Troponin T, TNT; THIN f 20.7 2.4E+02 0.0084 22.7 6.4 51 403-457 45-95 (106)
341 3c3g_A Alpha/beta peptide with 20.7 1.7E+02 0.0058 18.5 5.0 15 285-299 16-30 (33)
342 2d4y_A HAP1, flagellar HOOK-as 20.6 2.5E+02 0.0085 28.3 8.2 61 396-456 85-150 (463)
343 1m1j_A Fibrinogen alpha subuni 20.5 6.9E+02 0.024 25.4 16.4 17 286-302 114-130 (491)
344 3ajw_A Flagellar FLIJ protein; 20.4 3.6E+02 0.012 22.1 15.2 52 248-299 67-118 (150)
345 2odv_A Plectin 1, HD1; plakin 20.2 5E+02 0.017 23.7 12.4 24 312-335 170-193 (235)
346 1x4t_A Hypothetical protein LO 20.2 3.2E+02 0.011 21.5 9.2 42 282-323 27-68 (92)
347 4dk0_A Putative MACA; alpha-ha 20.2 5.2E+02 0.018 24.5 10.2 22 282-303 76-97 (369)
348 3gpv_A Transcriptional regulat 20.0 3.7E+02 0.013 22.5 8.0 59 300-362 70-132 (148)
No 1
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=100.00 E-value=6.8e-52 Score=414.07 Aligned_cols=176 Identities=24% Similarity=0.479 Sum_probs=151.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccCCCC--CCCCCCCCCCHHHHHHHHHHHHHccCC--CC-CcchHhHHHHHHHhcCCC
Q 012695 51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDY--PS-TTKFEEDLFVVLKSLSCP 125 (458)
Q Consensus 51 DpRpl~DK~~q~~~~~~I~~fL~~~~f~--~s~k~l~~PT~KdF~~If~fL~~~iD~--~~-~~k~EeEv~~~lK~L~YP 125 (458)
|||||+||+||++|+++|++||++|||+ ++.|+|++||+|||+.||+|||++||| +| ++|+|||||.+||.||||
T Consensus 4 DpRpl~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~idp~~~~~~~k~eeev~~~lK~L~YP 83 (315)
T 2ve7_A 4 DPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYP 83 (315)
T ss_dssp CCSCTTCHHHHHHHHHHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTSTTCCCCSSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCC
Confidence 7999999999999999999999999997 788999999999999999999999995 56 579999999999999999
Q ss_pred CccccccccCCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCcc--------------cccchHHHHHHHHHHHHHHhCCC
Q 012695 126 FKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKA--------------FVENNSMYMYASDSYLNYIEGKD 191 (458)
Q Consensus 126 ~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~~--------------~~~~~~~~~y~~~~Y~~fl~g~d 191 (458)
|+||||+|+|||||||||++||||||||+|+++.+++..++.. ...+.+||+|+.+||..|+.|+|
T Consensus 84 ~~isKS~L~a~g~pHsWp~~Lg~L~WLvel~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~y~~~~Y~~fl~~~d 163 (315)
T 2ve7_A 84 FALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGAD 163 (315)
T ss_dssp SCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHHHHHCC---------CCBCTTSCBSHHHHHHHHHHHHHHHHHTCS
T ss_pred ceeCHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccccchhcccccccccchHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999998776543311 12345799999999999999996
Q ss_pred CChhhhhHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHH
Q 012695 192 GDVDNIDKGFIEKLEK-------EKENVSEYVEELKKKVSEME 227 (458)
Q Consensus 192 ~~~e~l~~e~~~kl~~-------~~~~~~e~~~~L~~e~~eLe 227 (458)
+ ++++++++.+++.. +++++.+++++|++++++||
T Consensus 164 ~-~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le 205 (315)
T 2ve7_A 164 S-FDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLE 205 (315)
T ss_dssp C-CHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 46888999888887 44555555555555555554
No 2
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=315.53 Aligned_cols=109 Identities=28% Similarity=0.539 Sum_probs=104.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccCCCC--CCCCCCCCCCHHHHHHHHHHHHHccCC--CC-CcchHhHHHHHHHhcCCC
Q 012695 51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDY--PS-TTKFEEDLFVVLKSLSCP 125 (458)
Q Consensus 51 DpRpl~DK~~q~~~~~~I~~fL~~~~f~--~s~k~l~~PT~KdF~~If~fL~~~iD~--~~-~~k~EeEv~~~lK~L~YP 125 (458)
|||||+||+||++|+++|++||.++||+ ++.|.|++||+|||+.||+|||++||| +| ++|+||||+.+||.||||
T Consensus 6 DpRpl~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~idp~~~~~~~~~eeev~~~lK~L~YP 85 (120)
T 2igp_A 6 DPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYP 85 (120)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTTCTTCCCCCTTHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCC
Confidence 8999999999999999999999999997 788999999999999999999999995 56 589999999999999999
Q ss_pred CccccccccCCCCCCChHHHHHHHHHHHHHHhhh
Q 012695 126 FKINKSTLRSPNSPHNWPAYLALIHWLVQIASYN 159 (458)
Q Consensus 126 ~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~ 159 (458)
|+||||+|+||||||+||++||||+|||+|+++.
T Consensus 86 ~~isKS~L~a~g~pHsWp~~L~~L~WLvel~~~~ 119 (120)
T 2igp_A 86 FALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIH 119 (120)
T ss_dssp SCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHHC
T ss_pred ceeCHHHhcCCCCCccHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999874
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.18 E-value=0.0046 Score=57.86 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
++..+...+..+...+...+.++..++.++..+..+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
T 1c1g_A 238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 276 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444555555555544443
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.02 E-value=0.0096 Score=55.64 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012695 425 EMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 425 ~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
.+...+......+..++.++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~ 256 (284)
T 1c1g_A 234 EAETRAEFAERSVTKLEKSIDDL 256 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.82 E-value=2.9e-05 Score=90.00 Aligned_cols=8 Identities=25% Similarity=0.654 Sum_probs=3.4
Q ss_pred HHHHHhcC
Q 012695 116 FVVLKSLS 123 (458)
Q Consensus 116 ~~~lK~L~ 123 (458)
-.+|+.++
T Consensus 753 ~~lL~~l~ 760 (1184)
T 1i84_S 753 ILMIKALE 760 (1184)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHcC
Confidence 34444443
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.78 E-value=8.7e-05 Score=86.04 Aligned_cols=6 Identities=17% Similarity=0.291 Sum_probs=4.1
Q ss_pred cCCCCc
Q 012695 122 LSCPFK 127 (458)
Q Consensus 122 L~YP~~ 127 (458)
-|||+-
T Consensus 718 ~Gfp~R 723 (1184)
T 1i84_S 718 QGFPNR 723 (1184)
T ss_dssp HSCCEE
T ss_pred hcCccc
Confidence 478873
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.47 E-value=0.054 Score=51.79 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=76.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
Q 012695 204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVE---------EK 274 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~---------~l 274 (458)
.+.+.+..+-.++..|+.++..+.. .+..+..+...++.++.+++.-+.....++.+++.++. .+
T Consensus 22 ~l~~~~~~lp~el~~le~~~~~l~~------~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL 95 (256)
T 3na7_A 22 SLEPLIREKRKDLDKALNDKEAKNK------AILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSL 95 (256)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 3444444444555555555555542 45555666666666666666666666666666655553 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHH--
Q 012695 275 EREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE-- 352 (458)
Q Consensus 275 ~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE-- 352 (458)
..|++..+.++..++.++.++...++... +.++....++..++..+......++.....+......+....+.+.
T Consensus 96 ~kEie~~~~~i~~lE~eile~~e~ie~~~---~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~ 172 (256)
T 3na7_A 96 NIEEDIAKERSNQANREIENLQNEIKRKS---EKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEK 172 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555555555555555544432 2334444444444444444433333332222222222222222222
Q ss_pred ---HHHHHHHHHHHh
Q 012695 353 ---ALSMECNQAMKR 364 (458)
Q Consensus 353 ---~~v~~yN~~~~~ 364 (458)
.++..|..+-.+
T Consensus 173 i~~~lL~~Yerir~~ 187 (256)
T 3na7_A 173 TEPKIYSFYERIRRW 187 (256)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 567889888753
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.30 E-value=0.012 Score=56.47 Aligned_cols=83 Identities=8% Similarity=0.050 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
..+..........+..++.++...+.++..+...+++.+.++.+- -+..+++.+.+|++.+++.+..++..+.++..++
T Consensus 42 ~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v-~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 42 EAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI-KSERELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444555555555555555555555555432 2666666666666666666655555555554444
Q ss_pred hHHH
Q 012695 338 WDLD 341 (458)
Q Consensus 338 ~~~e 341 (458)
..++
T Consensus 121 e~~~ 124 (256)
T 3na7_A 121 KRKS 124 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.56 E-value=0.059 Score=61.69 Aligned_cols=87 Identities=13% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695 239 LEKEKCVLEEDLNKFNAI---IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (458)
Q Consensus 239 L~~~~~~L~~D~~Kf~~y---i~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E 315 (458)
+.++...|+.|+..++.. ....+.+...++++++.++++++....+.+.+++...+++..+. +.|..|..|
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~------~kv~~L~~e 1031 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE------QLVSELKEQ 1031 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 444555555544444432 22222333334444444444444444444444444444433222 344444455
Q ss_pred HHHHHHHHHHHHHHHH
Q 012695 316 LQAVERDIADAENARN 331 (458)
Q Consensus 316 ~~~L~~~i~~l~~~~~ 331 (458)
...|++.+++++..+.
T Consensus 1032 ~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1032 NTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555554443333
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.48 E-value=0.35 Score=43.97 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~ 366 (458)
.+..+..+...|......+...+.++++...++|.+.......++++=..||.++-++-
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~a 147 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNA 147 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666777777676677788888888888876643
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.94 E-value=0.11 Score=55.19 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 263 k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
+.+..+.++...+++.++++++++.+++++.++
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 549 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIAL 549 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHH
Confidence 333333333333333333333333333333333
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.76 E-value=0.28 Score=56.17 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=13.3
Q ss_pred HhHHHHHHHhcCCC---C--ccccccccC
Q 012695 112 EEDLFVVLKSLSCP---F--KINKSTLRS 135 (458)
Q Consensus 112 EeEv~~~lK~L~YP---~--~IsKS~L~a 135 (458)
-+-+-.+|..++.+ | .-||=.|.+
T Consensus 725 k~~~~~il~~~~~~~~~~~~G~TKVF~r~ 753 (1080)
T 2dfs_A 725 KQTCKNVLEKLILDKDKYQFGKTKIFFRA 753 (1080)
T ss_dssp HHHHHHHHTTTSCCGGGEEECSSEEEECT
T ss_pred HHHHHHHHHHhcCChhhheeccccchhcc
Confidence 34466777777654 3 444444544
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.56 E-value=1.9 Score=54.51 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=36.5
Q ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 395 KPALESFADDV---KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 395 k~~L~~l~~~i---~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+..|.++..++ .....++++++..+++.++.+++..++...|.+.|+.+++..+.+++
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444 33445556677777777777777777777777777777766666553
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.27 E-value=1.7 Score=39.48 Aligned_cols=43 Identities=7% Similarity=0.161 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Q 012695 267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDV 309 (458)
Q Consensus 267 ~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di 309 (458)
++..+..+..........+..+++.+..|.........|.+|+
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 3333333333333334444444444444444433333333333
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.09 E-value=0.22 Score=52.78 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 310 ERMRRELQAVERDIADAENARNEWE 334 (458)
Q Consensus 310 ~rmn~E~~~L~~~i~~l~~~~~~l~ 334 (458)
+.+..|++++++.++..+.+..++.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 3333344444444444333333333
No 16
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.79 E-value=0.9 Score=46.93 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~ 366 (458)
+.++|+++.+..++.++.++++.+.++....+.+.++..+...+.+++.+--.++.++|
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQLG 487 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhcC
Confidence 45556666666677777777777777777777777777777777777766666665553
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.67 E-value=2.2 Score=37.84 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNE 332 (458)
Q Consensus 253 f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~ 332 (458)
++..+..++.....+++.+..++..|+.-........+.+.+|+.+|..- ..|++++..-...+..+-..+...+..
T Consensus 53 Lq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L---~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 53 LQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSL---QEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555554444444445555555544333 234455544444444444445555555
Q ss_pred HHHHhhHHHhHHhhHHHHH
Q 012695 333 WESKTWDLDSKLGRKFKEL 351 (458)
Q Consensus 333 l~~~~~~~e~~~~~~~~~l 351 (458)
+++...++++.+.-.++.+
T Consensus 130 lEKe~a~~eid~~~eLKal 148 (168)
T 3o0z_A 130 SEKEKNNLEIDLNYKLKSL 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 5555555554444444433
No 18
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=94.56 E-value=1.4 Score=37.90 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=53.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 012695 203 EKLEKEKENVSEYVEELKKKVSEMEG------AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR-KEKMEKLVEEK 274 (458)
Q Consensus 203 ~kl~~~~~~~~e~~~~L~~e~~eLe~------l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k-~~~~e~~l~~l 274 (458)
.+|....+.+...+..|+..++.|-. .+-.|..++.+.+.+..+..|+.+++.||....-- +..|+..|...
T Consensus 17 ~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~V 95 (141)
T 3okq_A 17 TELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKV 95 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Confidence 36667777777777777777777755 34455678899999999999999999999987743 56676555544
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.44 E-value=2.4 Score=37.24 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=4.4
Q ss_pred HHHHhhHHHhH
Q 012695 333 WESKTWDLDSK 343 (458)
Q Consensus 333 l~~~~~~~e~~ 343 (458)
+....|.++..
T Consensus 138 ~~~~~~~~~~~ 148 (155)
T 2efr_A 138 LLSKNYHLENE 148 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred cccchHHHHHH
Confidence 33444444433
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.19 E-value=2.8 Score=37.13 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 012695 211 NVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGEL-------NMRKEKMEKLVEEKEREIGKKVE 283 (458)
Q Consensus 211 ~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~-------~~k~~~~e~~l~~l~~el~~~~~ 283 (458)
.+......++..+.+|. +....|+..+..|+.|+..++.-++.= ...+..++.++..+..|++....
T Consensus 38 El~k~~~~~E~~~rELq------~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQ------ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555554 345566666667777776666555433 23455666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012695 284 EHKRICEENEEFKKRVKLQ 302 (458)
Q Consensus 284 el~~l~~E~~~L~~~v~~Q 302 (458)
.+..+..++..|+..|...
T Consensus 112 ~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 112 NLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777776665544
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.18 E-value=17 Score=46.13 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 012695 89 VKDITDVIKFLIS 101 (458)
Q Consensus 89 ~KdF~~If~fL~~ 101 (458)
.+||..=.+-+|+
T Consensus 1685 ~~~f~eDLk~l~~ 1697 (3245)
T 3vkg_A 1685 SSDFDDDLRMLLK 1697 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 22
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.83 E-value=0.4 Score=40.82 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHH
Q 012695 309 VERMRRELQAVERDIADAE----NARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK 363 (458)
Q Consensus 309 i~rmn~E~~~L~~~i~~l~----~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~ 363 (458)
++-+...+..|+..|..++ ..+..++..+..+|.++.+...+++..+.+|..++.
T Consensus 52 l~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 52 IDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554443 345566667777777777788888888888876654
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.70 E-value=2.3 Score=34.49 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIG 258 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~ 258 (458)
.+.+.++...|+.|......-.+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae 26 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAE 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666655533333333
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.62 E-value=0.34 Score=41.46 Aligned_cols=55 Identities=9% Similarity=0.126 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHH
Q 012695 309 VERMRRELQAVERDIADAEN----ARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK 363 (458)
Q Consensus 309 i~rmn~E~~~L~~~i~~l~~----~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~ 363 (458)
++.+...+..|+..|..++. ++..++..+..+|.++.+...+++..+.+|..++.
T Consensus 54 l~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 54 LQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555544333 44556666777777777777777777777776653
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.88 E-value=1.7 Score=44.95 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 012695 315 ELQAVERDIA 324 (458)
Q Consensus 315 E~~~L~~~i~ 324 (458)
++++|+.+|+
T Consensus 146 kIQRLEvDId 155 (562)
T 3ghg_A 146 DMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 26
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.46 E-value=3.4 Score=34.14 Aligned_cols=55 Identities=20% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHh
Q 012695 310 ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKR 364 (458)
Q Consensus 310 ~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~ 364 (458)
..+..|+..|...-+.+...+.++++...++|.+-......++++=..||..+-+
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiEr 92 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555556665555666777777777776654
No 27
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=92.28 E-value=6 Score=40.45 Aligned_cols=37 Identities=30% Similarity=0.282 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 259 ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 259 ~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
.++.+...-+++|++++.|+.....+++.+..+++++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 433 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555555555555555555444444
No 28
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.04 E-value=2.6 Score=32.81 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEE 291 (458)
Q Consensus 257 i~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E 291 (458)
++.++.|+...-..|.-++.|++..+.+...+.++
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444554444444443333333333
No 29
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=91.97 E-value=1.5 Score=34.72 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 275 EREIGKKVEEHKRICEENEEFKKRVKLQTI---NARDVERMRRELQAVERDIADAENARNEWE 334 (458)
Q Consensus 275 ~~el~~~~~el~~l~~E~~~L~~~v~~Q~~---S~~di~rmn~E~~~L~~~i~~l~~~~~~l~ 334 (458)
+.|++.....|..++.++..|+..+..-.+ +.+.+..+..++..++..++.+..+..+|+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888889999999999988765 466777777788888887777776665554
No 30
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=91.32 E-value=5 Score=41.37 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=10.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 012695 205 LEKEKENVSEYVEELKKKVSEME 227 (458)
Q Consensus 205 l~~~~~~~~e~~~~L~~e~~eLe 227 (458)
|.+.-..+...++.|+..+.+|+
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHh
Confidence 33333444445555555555544
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.14 E-value=1.9 Score=37.18 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 248 ~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
+|+-+.+.-++.++..++.+.+.+..++.++.....+++.+..++.+|
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433333
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.91 E-value=4 Score=31.76 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
.+++.+|...-+.+.-.+.+++.++.++..|. ++.+.....++.|.+.+..+......++.++
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~----------~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLS----------QEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555553 2344444455555555555555555554443
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.07 E-value=4.3 Score=41.75 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 306 ARDVERMRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 306 ~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
.++++++..|.+++++.+.++..++.+..++..+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 4556666666666666666666665555554443
No 34
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=89.81 E-value=4.1 Score=34.39 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
.++..++.+.+.+..++.++..++..++++-++
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555566666666666666666655443
No 35
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.71 E-value=7.4 Score=31.88 Aligned_cols=24 Identities=4% Similarity=0.148 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 307 RDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
+|.++++.|+++|..++..+..+.
T Consensus 83 adREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 83 HAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHH
Confidence 455555666666655555544443
No 36
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.55 E-value=2.5 Score=36.75 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 012695 268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314 (458)
Q Consensus 268 e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~ 314 (458)
...+..++-++...+..+..+++|+..|-.+.=.+.- .|+++||.
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~--qEAe~MN~ 146 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE--KETEAMNS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3333334444444444455555555555444333332 34444443
No 37
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=88.97 E-value=9.8 Score=32.28 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK---LQTINARDVERMRRELQAVERDIADAENA 329 (458)
Q Consensus 253 f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~---~Q~~S~~di~rmn~E~~~L~~~i~~l~~~ 329 (458)
|+..++--+.........+.....+++.....+..+.....++...+. ..++|+.++...+.=+..|...|......
T Consensus 10 L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~ 89 (150)
T 3ajw_A 10 LETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQ 89 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555566667777777777788888888888877777665 36889999888888888888888877777
Q ss_pred HHHHHHHhhHHHhHH---hhHHHHHHHHHHHH
Q 012695 330 RNEWESKTWDLDSKL---GRKFKELEALSMEC 358 (458)
Q Consensus 330 ~~~l~~~~~~~e~~~---~~~~~~lE~~v~~y 358 (458)
+..++..+......+ ....+.++.+.+.+
T Consensus 90 l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~ 121 (150)
T 3ajw_A 90 LTQWTQKVDLALKSWREKKQRLQAWQTLQDRQ 121 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766665544433 23445566665443
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.90 E-value=4.6 Score=33.72 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 242 ~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
....++.|+..+..-++..--....++.+++.+++|+.-.+... ++|+.+|+.+
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h---eeEl~eLq~q 116 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH---EEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34556677777777777777677777777777777776543221 3455555544
No 39
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=88.76 E-value=2.6 Score=33.25 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE 310 (458)
Q Consensus 264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~ 310 (458)
.+++...+++.+++..+...+.+.-++.++++.+.+...|||++|.-
T Consensus 33 leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~eeL~ 79 (86)
T 3nr7_A 33 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 33444445555555555566666777888999999999999999974
No 40
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=88.71 E-value=3 Score=39.48 Aligned_cols=39 Identities=8% Similarity=0.065 Sum_probs=30.8
Q ss_pred HHHHHHHhccCCCC------CCCCCC-CCCCHHHHHHHHHHHHHcc
Q 012695 65 IRAINAHLSSHSFH------IAFPLK-QVPSVKDITDVIKFLISQL 103 (458)
Q Consensus 65 ~~~I~~fL~~~~f~------~s~k~l-~~PT~KdF~~If~fL~~~i 103 (458)
..+|..+|.+.|++ ++...| +.||.--...||.++...+
T Consensus 16 ~~eIv~~L~~~~i~~~~~~n~t~~DL~~~Ptp~~v~~iy~~~l~~~ 61 (250)
T 2ve7_C 16 VAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIV 61 (250)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCGGGTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccCCCHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 36889999999997 345556 7899988889988888844
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.30 E-value=7.1 Score=33.49 Aligned_cols=64 Identities=16% Similarity=0.083 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
+-.++.+...|+.++.....-+..+.........++.....+++....++..++.++.+|+..+
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555555555555555554443
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.26 E-value=7 Score=40.49 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=15.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 012695 277 EIGKKVEEHK-RICEENEEFKKRVKLQ 302 (458)
Q Consensus 277 el~~~~~el~-~l~~E~~~L~~~v~~Q 302 (458)
+.+....|+. +|+..+..|+..|++|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444 6666667777666665
No 43
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.21 E-value=9 Score=30.88 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 256 yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
-+..+......+..+...++..+...+.....+..++..|+..+
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555555555555565555555555555555555555554
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.88 E-value=6.6 Score=30.34 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 012695 240 EKEKCVLEEDL 250 (458)
Q Consensus 240 ~~~~~~L~~D~ 250 (458)
.++...|+.|.
T Consensus 5 kkKm~~lk~e~ 15 (81)
T 1ic2_A 5 KKKMQMLKLDK 15 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.31 E-value=25 Score=35.00 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=7.8
Q ss_pred cccchhhchhHHHH
Q 012695 386 MGVDYKSTLKPALE 399 (458)
Q Consensus 386 ~~~d~k~~ik~~L~ 399 (458)
+..+||.+.+.++.
T Consensus 217 vP~~fKsq~q~a~~ 230 (390)
T 1deq_A 217 VPREFKSQLQEAPL 230 (390)
T ss_pred CChhhcccccccch
Confidence 44567765555444
No 46
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.30 E-value=3.5 Score=34.09 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (458)
Q Consensus 261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~ 304 (458)
+.+.++++.+|..+...|.....+++.+..++..|..+|..++.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~~ 113 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKKY 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhccc
Confidence 44566677777777777777777888888888888888877774
No 47
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.94 E-value=10 Score=30.18 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHh
Q 012695 205 LEKEKENVSEYVEELKKKVSEMEG 228 (458)
Q Consensus 205 l~~~~~~~~e~~~~L~~e~~eLe~ 228 (458)
|....+++.+.+..|+++...||.
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~ 37 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLA 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666667776666663
No 48
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=86.04 E-value=4.3 Score=32.40 Aligned_cols=28 Identities=7% Similarity=0.193 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 307 RDVERMRRELQAVERDIADAENARNEWE 334 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~ 334 (458)
+|.+||+.+++.|...+..+..+...+.
T Consensus 61 adREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 61 HAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555544443
No 49
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=84.94 E-value=6.2 Score=26.20 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=28.9
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 299 VKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 299 v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
+...++|+++...+..|.+.|++.+..+...+..+
T Consensus 12 lkkegfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 12 LKKEGFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34579999999999999999999888887776544
No 50
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=84.60 E-value=7.1 Score=28.11 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 249 DLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 249 D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
.+.+++.++..+..........+......+......++.+..++..++.+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666666666666777777777777766553
No 51
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.59 E-value=14 Score=29.57 Aligned_cols=16 Identities=6% Similarity=0.208 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 012695 280 KKVEEHKRICEENEEF 295 (458)
Q Consensus 280 ~~~~el~~l~~E~~~L 295 (458)
....++..++.+...|
T Consensus 22 ~L~~eL~~lEke~~~l 37 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVV 37 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHH
Confidence 3333333333333333
No 52
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.53 E-value=16 Score=30.19 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695 285 HKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323 (458)
Q Consensus 285 l~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i 323 (458)
++.++.|+..|...+.+. -++++|+.++.+.+.-.|
T Consensus 73 vqeLqgEI~~Lnq~Lq~a---~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDA---SAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhhchhhhhHh
Confidence 444455555554444333 234455544444444333
No 53
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=84.19 E-value=16 Score=30.07 Aligned_cols=65 Identities=8% Similarity=0.068 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
|..+.+.....+..|...+...+..+..+++.-...+..|..| +-++...|+.+...+..+....
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~q------L~~Lt~~Re~V~~eL~rLQ~eN 100 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQ------MAVLMQSREQVSEELVRLQKDN 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhc
Confidence 7777888888888888888888888888887777776665543 3344444444444444443333
No 54
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=84.18 E-value=20 Score=36.36 Aligned_cols=14 Identities=7% Similarity=0.069 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 012695 214 EYVEELKKKVSEME 227 (458)
Q Consensus 214 e~~~~L~~e~~eLe 227 (458)
..++.|+..+.+++
T Consensus 38 ~~l~~LE~~l~els 51 (409)
T 1m1j_C 38 GELLEIEGLLQQAT 51 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444443
No 55
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.15 E-value=16 Score=29.91 Aligned_cols=42 Identities=7% Similarity=0.083 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 293 ~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
.=|+.+++.. .+|+..=...|+++...++.+..++..++.++
T Consensus 65 ~vLkaQv~IY---~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 65 PVLKAQADIY---KADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455555443 35666666667777777777777666666554
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.10 E-value=13 Score=28.70 Aligned_cols=67 Identities=9% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTW 338 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~ 338 (458)
+++..++.+.+........++.+..........- -.+|.-+++.+..|+.+++.++.++.....++.
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~---E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQL---EDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443332221 134444555555555555555555544444433
No 57
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=83.96 E-value=1.3 Score=31.71 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTW 338 (458)
Q Consensus 295 L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~ 338 (458)
+++-+...+-+..|++.+..|.+.|+..++.+..+.+++..++.
T Consensus 7 Ik~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 7 LKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555667889999999999999999999999988887654
No 58
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=83.86 E-value=7.1 Score=32.70 Aligned_cols=40 Identities=10% Similarity=0.181 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
+..+..+...|..|+.+|+...........+++.|+..++
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555554444444445555544433
No 59
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=83.66 E-value=5.4 Score=34.50 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
.++..++.+.+.+..++..+..++..++++-++
T Consensus 109 ~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 109 EYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555443
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=83.53 E-value=14 Score=36.68 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 012695 294 EFKKRVKL 301 (458)
Q Consensus 294 ~L~~~v~~ 301 (458)
.|+..|+.
T Consensus 124 ~lk~~V~~ 131 (390)
T 1deq_A 124 ILRRKVIE 131 (390)
T ss_pred HHHHHHHH
Confidence 33333333
No 61
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=83.10 E-value=17 Score=29.41 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
...+..++..+.......+.++..+......|
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444433
No 62
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=83.06 E-value=14 Score=28.50 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
|-.++.-+.--|..|++....++.++..-++|+...+.+++.-..+++.|+.++-
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3334444444456666666777777777777777777777777777777776653
No 63
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=82.96 E-value=5.4 Score=26.84 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
+|+.+++.+...++.+..++++. +..++.|+.-|++.|.
T Consensus 3 aYl~eLE~r~k~le~~naeLEer-------vstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEER-------LSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHhc
Confidence 68888888888888777776544 5677788888877764
No 64
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=82.93 E-value=6.9 Score=28.83 Aligned_cols=47 Identities=21% Similarity=0.141 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 408 SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 408 ~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
.+..+.++...|+..+..++....+++.+++.|+.++..|.+-+.++
T Consensus 17 ~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e~ 63 (63)
T 1ci6_A 17 YRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEV 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33444577888999999999999999999999999999888877653
No 65
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=82.74 E-value=40 Score=35.80 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=8.5
Q ss_pred CCChHHHHHHHHHHHHHH
Q 012695 139 PHNWPAYLALIHWLVQIA 156 (458)
Q Consensus 139 pHsWP~~Lg~L~WLv~l~ 156 (458)
+-+=|.|..++.=+|+.+
T Consensus 287 ~vtG~~L~~l~~~yv~ai 304 (592)
T 1f5n_A 287 QVNGPRLESLVLTYVNAI 304 (592)
T ss_dssp ECBHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 334445555544444444
No 66
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=82.56 E-value=6.7 Score=29.78 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINE 446 (458)
Q Consensus 416 ~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~ 446 (458)
+...+..|..+...|.++..+|..|+.++++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555444
No 67
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.26 E-value=15 Score=30.84 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 012695 350 ELEALSMECNQA 361 (458)
Q Consensus 350 ~lE~~v~~yN~~ 361 (458)
.|+.=|..|.++
T Consensus 114 ~Ld~EIatYRkL 125 (129)
T 3tnu_B 114 ALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 344445555544
No 68
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=82.25 E-value=23 Score=36.06 Aligned_cols=13 Identities=0% Similarity=0.496 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 012695 215 YVEELKKKVSEME 227 (458)
Q Consensus 215 ~~~~L~~e~~eLe 227 (458)
.+..|...+.++.
T Consensus 66 rI~kLkn~L~~~s 78 (491)
T 1m1j_A 66 RIDNIRQQLADSQ 78 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 69
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=82.15 E-value=5 Score=30.45 Aligned_cols=47 Identities=11% Similarity=-0.038 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012695 409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFL 455 (458)
Q Consensus 409 ~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~ 455 (458)
..+.++.+..-.++|....+.|+++..++...+..++.|..+|+.|-
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555566666777777888888888888888888888888883
No 70
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=81.98 E-value=22 Score=29.95 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
+.++.+....++.|..+.+|+...+..++......++--.+-..|.+.+.....+.....+-...++.+...+-.+.+.+
T Consensus 49 DQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKEL 128 (167)
T 4gkw_A 49 DQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKEL 128 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555554444444444433333333333333332222232222222233344444444455555
Q ss_pred hHHHhHHhhHHHHHHHHHHH
Q 012695 338 WDLDSKLGRKFKELEALSME 357 (458)
Q Consensus 338 ~~~e~~~~~~~~~lE~~v~~ 357 (458)
.+.-+......+.+|.+-.+
T Consensus 129 EdEklK~~E~MdSFE~LkvE 148 (167)
T 4gkw_A 129 ENEKLKAAENMDSFEKLSME 148 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 55555555566666655433
No 71
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=81.18 E-value=53 Score=33.82 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
.+.+++++.+.+++-.+.+.|.+.|++.++..+...+.
T Consensus 29 ka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 29 KAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777776666666777777666666555443
No 72
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.93 E-value=20 Score=28.76 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 012695 282 VEEHKRICEENEEF 295 (458)
Q Consensus 282 ~~el~~l~~E~~~L 295 (458)
+.+...+..|.++|
T Consensus 46 E~~~~~ie~ElEeL 59 (97)
T 2eqb_B 46 EEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 73
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.89 E-value=17 Score=30.58 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 012695 350 ELEALSMECNQAM 362 (458)
Q Consensus 350 ~lE~~v~~yN~~~ 362 (458)
.|+.=|..|.+++
T Consensus 116 ~Ld~EIatYRkLL 128 (131)
T 3tnu_A 116 RLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhH
Confidence 4444455665553
No 74
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=80.88 E-value=8.5 Score=27.99 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 407 RSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 407 ~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
..+.-+.+....|+..++.++....+++.+|..|..++..|.+.+
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455578889999999999999999999999999999888765
No 75
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.07 E-value=24 Score=29.07 Aligned_cols=47 Identities=9% Similarity=0.155 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE 310 (458)
Q Consensus 264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~ 310 (458)
+..++..+..+...-+.....+..+++.+.+|...-..-..|.+|++
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 33344444444444444444445555555555444444444444443
No 76
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=79.72 E-value=8 Score=37.51 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWE 334 (458)
Q Consensus 265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~ 334 (458)
...+..+...+.++...+.+++..+.+.++.+.-.+..-+|..+++....+....+..+..++.++..++
T Consensus 72 ~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~ 141 (341)
T 3fpp_A 72 KEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQ 141 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666777777778888888888888999999999888887777766666555554443
No 77
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=79.46 E-value=17 Score=31.48 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhH
Q 012695 317 QAVERDIADAENARNEWESKTWDLDSK 343 (458)
Q Consensus 317 ~~L~~~i~~l~~~~~~l~~~~~~~e~~ 343 (458)
.-+..+++.++.+.+....++.+++-.
T Consensus 83 ~~~E~dLeraeeRae~aE~k~~eLEee 109 (147)
T 2b9c_A 83 VIIESDLERAEERAELSEGKCAELEEE 109 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554443
No 78
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=79.38 E-value=24 Score=35.73 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh--ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 207 KEKENVSEYVEELKKKVSEMEG--AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLV 271 (458)
Q Consensus 207 ~~~~~~~e~~~~L~~e~~eLe~--l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l 271 (458)
.+++++.+....|.+.+..+-. ....|+..+...++.+.+.+++.+++..+...+..+..++..+
T Consensus 48 ~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~ 114 (409)
T 1m1j_C 48 QQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3444444444445444444422 1233344444555555666666666555555444444444333
No 79
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=77.75 E-value=12 Score=27.42 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 407 RSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 407 ~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+.+.-+.+....|+..++.++....+++.+|+.|+.++..|...+.
T Consensus 16 rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 16 KCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788899999999999999999999999999988887664
No 80
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=76.52 E-value=17 Score=28.04 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEE 273 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~ 273 (458)
.|+.-...|..--+|++..|..++.....+++.|..
T Consensus 29 sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~ 64 (78)
T 3iv1_A 29 ALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIEL 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444443333
No 81
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=75.81 E-value=22 Score=28.29 Aligned_cols=34 Identities=6% Similarity=0.017 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 306 ARDVERMRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 306 ~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
.+|+..=...|+++....+.+...+..++.+...
T Consensus 53 ~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 53 KADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455555555566655555555555555554433
No 82
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=75.27 E-value=8.3 Score=37.78 Aligned_cols=67 Identities=4% Similarity=0.061 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWE 334 (458)
Q Consensus 268 e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~ 334 (458)
+..+...+.++...+.+++..+.+.++++.-.+..-+|..+++....++...+..++.++.++..++
T Consensus 76 ~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~ 142 (369)
T 4dk0_A 76 KAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAE 142 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666667777777778888888888889999988888777777776666555544443
No 83
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=75.25 E-value=23 Score=26.52 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAV 319 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L 319 (458)
..+..++++|..++.++..++ ..+. +.-.|.+|+|-|+-.+
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~-------e~i~---lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLK-------EVIA---LKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHH---HhcccHHHhhHHHHHh
Confidence 355556666666655555554 3222 1223667776665544
No 84
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=75.16 E-value=29 Score=27.52 Aligned_cols=19 Identities=5% Similarity=-0.088 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012695 245 VLEEDLNKFNAIIGELNMR 263 (458)
Q Consensus 245 ~L~~D~~Kf~~yi~~~~~k 263 (458)
.++.++..+..++...+..
T Consensus 6 ~f~~~l~el~~WL~e~e~~ 24 (118)
T 3uul_A 6 SYQIALEEVLTWLLSAEDT 24 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 85
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=74.79 E-value=11 Score=38.70 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
..+..+.++..+...+++.++.+++.+.+.|..-+-+.++++.+..+...|.+.|..++.+..++
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555666666666666666666432233455555555555555555444444333
No 86
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=74.79 E-value=58 Score=32.89 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=23.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 231 TGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK 269 (458)
Q Consensus 231 ~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~ 269 (458)
..|+.++.+.++.+.+.+++.+++..+....+.+..++.
T Consensus 74 ~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~ 112 (411)
T 3ghg_C 74 SKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQE 112 (411)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445556666676666667777776666655555554443
No 87
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=73.88 E-value=15 Score=28.75 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHH
Q 012695 316 LQAVERDIADAENARNEWESKTWDLDSKLGRKFKEL 351 (458)
Q Consensus 316 ~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~l 351 (458)
|..++.++..+.+.++++.-.-.++|..+....++|
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444444444
No 88
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=73.69 E-value=25 Score=27.27 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=18.3
Q ss_pred HHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHH
Q 012695 330 RNEWESKTWDLDSKLGRKFKELEALSMECNQAM 362 (458)
Q Consensus 330 ~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~ 362 (458)
+..++..+..+|.++.+...+++..+.+|..++
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556666666666665544
No 89
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.95 E-value=31 Score=29.92 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 256 yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
-|..++.....++.+|..++.++..+...++.+..|...|+-+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq 111 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIE 111 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666555555443
No 90
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.75 E-value=6.4 Score=41.81 Aligned_cols=96 Identities=9% Similarity=0.223 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc
Q 012695 231 TGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEH-------KRICEENEEFKKRVKLQT 303 (458)
Q Consensus 231 ~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el-------~~l~~E~~~L~~~v~~Q~ 303 (458)
......+..+.+...|+..+..+++-....+......+..+..|.+++...+.+- ..+++++.+|+.. ..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~---~~ 401 (575)
T 2i1j_A 325 LEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET---KN 401 (575)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 3344455555555666665655555555555555555554444444444333333 3333444444333 23
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 304 INARDVERMRRELQAVERDIADAENA 329 (458)
Q Consensus 304 ~S~~di~rmn~E~~~L~~~i~~l~~~ 329 (458)
.+.++-++|..++.+.+..+..+..+
T Consensus 402 ~~~~e~~~l~~~~~~~~~~~~~~~~~ 427 (575)
T 2i1j_A 402 MEAAERQKLEDEIRAKQEEVSRIQQE 427 (575)
T ss_dssp --------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444333
No 91
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=72.63 E-value=8.1 Score=25.03 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 270 LVEEKEREIGKKVEEHKRICEENEEFKK 297 (458)
Q Consensus 270 ~l~~l~~el~~~~~el~~l~~E~~~L~~ 297 (458)
.-+.+..+++.+..+|..++.++.+|+.
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3456778888888888899988888853
No 92
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=72.38 E-value=8.6 Score=39.90 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 280 KKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 280 ~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
+...+++.++.++..+.+.|..-+-+.+|++.+..+...|...|..++.+.
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~ 94 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKE 94 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443221122344444444444444444443333
No 93
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=71.90 E-value=35 Score=26.97 Aligned_cols=18 Identities=6% Similarity=-0.018 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMR 263 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k 263 (458)
+..++..+..++...+..
T Consensus 7 F~~~l~el~~WL~~~e~~ 24 (119)
T 3uun_A 7 YQTALEEVLSWLLSAEDT 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555544443
No 94
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=71.79 E-value=50 Score=28.74 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEK 266 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~ 266 (458)
+.+..+.+...|+..+.-...-+..++..-.+
T Consensus 36 Rae~aE~k~~eLEeeL~~v~~nlKsLE~seek 67 (155)
T 2efr_A 36 RAELSEGKSAELEEELKTVTNNLKSLEAQAEK 67 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhH
Confidence 34444444444444444444333444333333
No 95
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=71.75 E-value=19 Score=36.52 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
..+..+.++..+...+++.++.+++.+.+.|.. -+.++++.+..+...+.+.|..++.+..++
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666677777788888888775 344555555555555555554444444333
No 96
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.74 E-value=36 Score=27.09 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012695 273 EKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 273 ~l~~el~~~~~el~~l~~E~~~L 295 (458)
....++.....++.-.......|
T Consensus 71 e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 71 ELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444333333333
No 97
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=71.58 E-value=47 Score=28.36 Aligned_cols=67 Identities=13% Similarity=0.242 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHhHH
Q 012695 278 IGKKVEEHKRICEENEEFKKRVKLQTI--NARDVERMRRELQAVERDIADAENARNEWE---SKTWDLDSKL 344 (458)
Q Consensus 278 l~~~~~el~~l~~E~~~L~~~v~~Q~~--S~~di~rmn~E~~~L~~~i~~l~~~~~~l~---~~~~~~e~~~ 344 (458)
.+........++.-++.|++-|...|+ ++..++.+..+++.+..+|.+++.-+.... +++|+.|+.-
T Consensus 23 sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~ 94 (141)
T 3okq_A 23 SDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDK 94 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence 344445556666677888888888877 667788888888888888877766555443 5778777643
No 98
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=71.41 E-value=8.3 Score=28.17 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 408 SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 408 ~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
.+.-+.+....|+..+..++....+++.+++.|..++..|.+.+
T Consensus 16 ~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 16 SRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445577888888888888888888888888888888777665
No 99
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=71.31 E-value=6.9 Score=35.17 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 401 FADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 401 l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
....++++.........+|+.+...+.++++.+..|+++|+.++..++++.
T Consensus 7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 7 YKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333333334445555555555555555555555555555555544
No 100
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=71.26 E-value=17 Score=29.14 Aligned_cols=45 Identities=20% Similarity=0.417 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHH
Q 012695 208 EKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNA 255 (458)
Q Consensus 208 ~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~ 255 (458)
-...+..+++.|++++..||.+.+ ....|+.+-.-|..++..|.+
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~iqs---~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKMQN---NSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHH
Confidence 334466677777777777776443 456677777777777777764
No 101
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=71.17 E-value=12 Score=28.85 Aligned_cols=48 Identities=15% Similarity=-0.004 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 405 VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 405 i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+..++..++..+.-.++.|+.+...+.....+|+.|+.+++.|.+++.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777888888888888888888888887777654
No 102
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=70.83 E-value=18 Score=29.17 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 270 ~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
.+..+..+++..+.|...+.++++.|.-++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666666666666666666
No 103
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=70.47 E-value=99 Score=31.59 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~ 314 (458)
++...+.++..+++|+...++-+.......+..++.+..+.++-...+..+..+.+. +++..+...
T Consensus 357 RlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K--------------iAE~KrK~d 422 (602)
T 1cii_A 357 RLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK--------------IAEEKRKQD 422 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--------------HHHHHHhhh
Confidence 466777888888888888887777777766666666665555444433333333322 233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 315 ELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 315 E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
|.+.++..++....-.+.+.++.-+
T Consensus 423 E~~aIKDAVkfTAdFykkIsEkyGe 447 (602)
T 1cii_A 423 ELKATKDAINFTTEFLKSVSEKYGA 447 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555665555444444444444433
No 104
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=70.11 E-value=8.5 Score=29.06 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012695 258 GELNMRK 264 (458)
Q Consensus 258 ~~~~~k~ 264 (458)
..++.+.
T Consensus 32 ~~LE~~v 38 (70)
T 1gd2_E 32 KALETQV 38 (70)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 105
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=70.05 E-value=66 Score=29.43 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 012695 212 VSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDL-NKFNAIIGELNMRKEKMEKLV 271 (458)
Q Consensus 212 ~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~-~Kf~~yi~~~~~k~~~~e~~l 271 (458)
+.++...|+..+.+|.+ .++.+-..+..++.|+ .||-..+++=..|+..++++|
T Consensus 144 L~~e~~~l~~~~~~l~~------qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 144 LQKENERLLRDWNDVQG------RFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444445555544432 4556666677777776 366666665555555554333
No 106
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=69.37 E-value=14 Score=28.56 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 402 ADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 402 ~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
++.+..+......+...|++++..+...+++-+.+=..+++.+..+-++|+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555666666677777777777777777666666666666655554
No 107
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=69.03 E-value=44 Score=27.00 Aligned_cols=59 Identities=8% Similarity=0.217 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 396 PALESFADDVKRSSVEKLEELISLQQQSS--------EMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 396 ~~L~~l~~~i~~~~~~~~~e~~~l~~~l~--------~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
..|.+|-+++.....++..-..+|++.-. -++..+...+..|++|+.++.+++.+|+.-
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777776665555544555554443 245667788889999999999999999764
No 108
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=68.87 E-value=1e+02 Score=31.07 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHh
Q 012695 142 WPAYLALIHWLVQIAS 157 (458)
Q Consensus 142 WP~~Lg~L~WLv~l~~ 157 (458)
=|.+..+|.|+.++..
T Consensus 199 ~~~~~~al~~~~~l~~ 214 (471)
T 3mq9_A 199 NAGAKAGLTFLVDLIK 214 (471)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 4778888888888875
No 109
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=68.74 E-value=29 Score=26.82 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKR 287 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~ 287 (458)
-..+++....+.+..++..|++.++.+++.
T Consensus 41 i~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 41 QNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444454444444444444
No 110
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=68.45 E-value=43 Score=26.57 Aligned_cols=20 Identities=10% Similarity=0.321 Sum_probs=8.2
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 012695 204 KLEKEKENVSEYVEELKKKV 223 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~ 223 (458)
++...+..+..+++.++.+.
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~ 31 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQI 31 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333
No 111
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=68.35 E-value=45 Score=26.77 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=16.5
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 299 VKLQTINARDVERMRRELQAVERDIADAEN 328 (458)
Q Consensus 299 v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~ 328 (458)
++.+++.+.....++.....-+.+++.++.
T Consensus 70 lE~r~~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 70 EELRYAPLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666666655666555555555554443
No 112
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=68.24 E-value=27 Score=32.51 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 275 EREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 275 ~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
+.++...+.+++..+.+.++.+.-.+..-+|..+++....+....+..++.++.++
T Consensus 66 ~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l 121 (277)
T 2f1m_A 66 KGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAV 121 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666677777777788899999888777776666555444333
No 113
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.22 E-value=46 Score=26.83 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=9.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 012695 204 KLEKEKENVSEYVEELKKKVSE 225 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~~e 225 (458)
++...+..+..++..++.++.+
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e 38 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTE 38 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 114
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=68.13 E-value=47 Score=29.49 Aligned_cols=39 Identities=5% Similarity=0.310 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 012695 287 RICEENEEFKKRVKLQTINARDVERMRRELQAVERDIAD 325 (458)
Q Consensus 287 ~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~ 325 (458)
++.....+|+..+.+-+++.+.|+.+..|+..|+.++..
T Consensus 93 ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 93 QLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888889999999999999999888887764
No 115
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=67.76 E-value=44 Score=26.45 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 012695 260 LNMRKEKMEKL 270 (458)
Q Consensus 260 ~~~k~~~~e~~ 270 (458)
++.....++.+
T Consensus 28 LEqqN~~Le~~ 38 (93)
T 3s4r_A 28 LEQQNKILLAE 38 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 116
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=67.49 E-value=1.3e+02 Score=31.81 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 012695 283 EEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322 (458)
Q Consensus 283 ~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~ 322 (458)
.+.+.+-..+-.-|..+-..|+ .+.++.|+.|++.|++.
T Consensus 544 ~e~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 544 KEQERTLALKLQEQEQLLKEGF-QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 3333333333333445555565 46777777777777665
No 117
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=67.47 E-value=30 Score=24.47 Aligned_cols=41 Identities=2% Similarity=0.072 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (458)
Q Consensus 262 ~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q 302 (458)
.+...+-.++..|..++.....++...+.|-.+--.+|+++
T Consensus 11 s~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN~ 51 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADNA 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33333444444444444444444445555555555555543
No 118
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.41 E-value=11 Score=26.90 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 424 SEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 424 ~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
+.+...+.+.+.++..|..+++++.+++..
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555556666666666665554
No 119
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.78 E-value=38 Score=25.64 Aligned_cols=47 Identities=19% Similarity=0.105 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 406 ~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
..+......+...|++++..+...+++-+.+=..+++.+..+-++|+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666777777777777777777666666666666655554
No 120
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=66.53 E-value=18 Score=27.75 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 256 yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
-+..++.+.+-.+..|+.+...+.+...++..++.+...|..++.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555544443
No 121
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=66.36 E-value=1e+02 Score=30.21 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695 307 RDVERMRRELQAVERDIA---DAENARNEWESKTWDLDSKLGRKFKELEALSMEC 358 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~---~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~y 358 (458)
.++.+|..++..|++.+. .+...+..+...+.+....+..++..++.+....
T Consensus 226 k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W 280 (346)
T 2nrj_A 226 DNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQW 280 (346)
T ss_dssp GGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655442 2223333333444444444444444555444333
No 122
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=65.68 E-value=30 Score=35.98 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 308 DVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 308 di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
+++.+..+...|.+.|..++.+..++
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~ 142 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQL 142 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 123
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.28 E-value=55 Score=26.33 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012695 317 QAVERDIADAENARNEWESK 336 (458)
Q Consensus 317 ~~L~~~i~~l~~~~~~l~~~ 336 (458)
+.++..|..++.++..+..+
T Consensus 80 e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333
No 124
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=63.84 E-value=19 Score=38.15 Aligned_cols=13 Identities=0% Similarity=-0.146 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHh
Q 012695 175 MYMYASDSYLNYIE 188 (458)
Q Consensus 175 ~~~y~~~~Y~~fl~ 188 (458)
++.+ +..|+.|..
T Consensus 280 i~~l-c~~~H~ff~ 292 (575)
T 2i1j_A 280 ILAL-CMGNHELYM 292 (575)
T ss_dssp HHHH-HHHHHHHHH
T ss_pred HHHH-HHHHHHHHH
Confidence 4444 445666543
No 125
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.20 E-value=76 Score=27.57 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 012695 282 VEEHKRICEENEEF 295 (458)
Q Consensus 282 ~~el~~l~~E~~~L 295 (458)
+.+...++.|.++|
T Consensus 78 E~~~~~ie~ElEeL 91 (154)
T 2ocy_A 78 EEEADKLNKEVEDL 91 (154)
T ss_dssp HTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 126
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=63.04 E-value=18 Score=24.60 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 421 QQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 421 ~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
+.+.++...-++...++.+|+.|++.+.+.+..
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666666777777777777777777653
No 127
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=62.90 E-value=63 Score=26.55 Aligned_cols=58 Identities=19% Similarity=0.076 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
.|......|+.++.|..+.-..++.. |..+-++.+.++......+...+....+|+..
T Consensus 10 ~lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~ 67 (112)
T 1x79_B 10 KLQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQG 67 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333 44444444444444444444444444444433
No 128
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=62.69 E-value=49 Score=25.67 Aligned_cols=36 Identities=33% Similarity=0.497 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 416 ~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
...|+.+|+.+...|..+|-.++.+..+++.+..+-
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777766543
No 129
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=62.51 E-value=22 Score=23.92 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012695 243 KCVLEEDLNKFNAIIGELNMRK 264 (458)
Q Consensus 243 ~~~L~~D~~Kf~~yi~~~~~k~ 264 (458)
+-.|+.|-+.++.+|.++...+
T Consensus 19 nlqlerdeqnlekiianlrdei 40 (52)
T 3he5_B 19 NLQLERDEQNLEKIIANLRDEI 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhHHHHHHHHHHHH
Confidence 3344444444444444433333
No 130
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=62.49 E-value=39 Score=24.03 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN 292 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~ 292 (458)
++.++.....-+.....+..+....+..+.+++.....++..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444455555555555555555444443
No 131
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=62.38 E-value=12 Score=24.17 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 312 MRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 312 mn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
|.++....+++|++++.+..-|++++.-
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 5566666677777777766666665543
No 132
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=62.24 E-value=31 Score=23.22 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
.+...|+..-+.+.+.|...|.+++.|+.++..-
T Consensus 17 kdnlqlerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 17 KDNLQLERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455666666778888899999999998877543
No 133
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=62.07 E-value=11 Score=29.48 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q 012695 348 FKELEALSMECNQA 361 (458)
Q Consensus 348 ~~~lE~~v~~yN~~ 361 (458)
++.--.++..||.+
T Consensus 40 ~~~hI~~Lh~YNei 53 (85)
T 3viq_B 40 VQKHIDLLHTYNEI 53 (85)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHH
Confidence 44555678888875
No 134
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=61.94 E-value=65 Score=26.36 Aligned_cols=58 Identities=7% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012695 398 LESFADDVKRSSVEKLEELISLQQQSS--------EMAAKIEGKRKRIDALQFHINEVSAKKFLFL 455 (458)
Q Consensus 398 L~~l~~~i~~~~~~~~~e~~~l~~~l~--------~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~ 455 (458)
|.+|-++|.....++..-..+|++.-. -++..+...+..|++|+.++.+++.+|+...
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665555554444444444332 2456677888899999999999999998754
No 135
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.73 E-value=60 Score=25.95 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVE 272 (458)
Q Consensus 241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~ 272 (458)
.+...|..++..-.......+....+.+..++
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE 57 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEADKLNKEVE 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 136
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.68 E-value=61 Score=25.97 Aligned_cols=28 Identities=4% Similarity=0.201 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 418 SLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (458)
Q Consensus 418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~ 445 (458)
.++.++..+...+...+.++..|+.+++
T Consensus 75 ~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 75 NSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 137
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=60.91 E-value=95 Score=31.76 Aligned_cols=28 Identities=4% Similarity=0.051 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 247 EEDLNKFNAIIGELNMRKEKMEKLVEEK 274 (458)
Q Consensus 247 ~~D~~Kf~~yi~~~~~k~~~~e~~l~~l 274 (458)
..|++.++..++.+.+......+.+..+
T Consensus 94 ~~dl~~Le~~l~~isn~Ts~a~~~v~~i 121 (461)
T 3ghg_B 94 RNSVDELNNNVEAVSQTSSSSFQYMYLL 121 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333333333344433333333333333
No 138
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=59.89 E-value=27 Score=26.23 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
..+..|+.++..+.........++..|..++..|...+..|
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56667777777777777777777777777777777776654
No 139
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=59.67 E-value=34 Score=26.62 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 395 KPALESFADDVKRSSVEKLEELISLQQQSSEM 426 (458)
Q Consensus 395 k~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~ 426 (458)
+..|..|++.+...+....+++..|++.|+..
T Consensus 39 kEqL~~LKkkl~~el~~h~~ei~~le~~i~rh 70 (84)
T 1gmj_A 39 KEQLAALKKHKENEISHHAKEIERLQKEIERH 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333333333333333
No 140
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=59.61 E-value=65 Score=25.62 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
...-+++-.+-+++++..+.+--+++.+.....++.-+.+-.++.|+.+|++-|.
T Consensus 53 nTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 53 NTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444555555666777777766666766666677777777777778877777654
No 141
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=59.37 E-value=20 Score=27.96 Aligned_cols=30 Identities=3% Similarity=-0.052 Sum_probs=13.9
Q ss_pred HHHHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695 332 EWESKTWDLDSKLGRKFKELEALSMECNQA 361 (458)
Q Consensus 332 ~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~ 361 (458)
.++..+..+|.++++...+++..+.+|..+
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444555555555444
No 142
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.33 E-value=57 Score=25.31 Aligned_cols=29 Identities=21% Similarity=0.484 Sum_probs=15.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCC
Q 012695 205 LEKEKENVSEYVEELKKKVSEMEGAMTGP 233 (458)
Q Consensus 205 l~~~~~~~~e~~~~L~~e~~eLe~l~~~~ 233 (458)
....++.+...|..|+.++..|+...+.|
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp 48 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADA 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34455555556666666666665544443
No 143
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=59.28 E-value=76 Score=26.34 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=6.7
Q ss_pred HHHHHHhhcCCHHHHHHH
Q 012695 295 FKKRVKLQTINARDVERM 312 (458)
Q Consensus 295 L~~~v~~Q~~S~~di~rm 312 (458)
|+..|..|.--++.++++
T Consensus 87 Ld~~ik~qekiIdnFE~i 104 (119)
T 3etw_A 87 LEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333334333
No 144
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.05 E-value=46 Score=24.24 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 266 KMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 266 ~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
.++.++..++.+......++..++.|+..|+..
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444445555555555444
No 145
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=59.04 E-value=28 Score=21.30 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 423 SSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 423 l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
+..++..|...+.++++|.-++.++++-
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445556666666777777777666654
No 146
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=58.32 E-value=11 Score=38.32 Aligned_cols=64 Identities=11% Similarity=0.226 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNE 332 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~ 332 (458)
..+..+.++..+...+++.++.+++.+.+.|..-+-+.++++.+..+...+.+.|..++.+..+
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRK 93 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666667777777777777654333344444444545555444444443333
No 147
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=58.05 E-value=92 Score=30.78 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhccCCCC------hHHHHHHHHHHHHHHHHHHHHH
Q 012695 215 YVEELKKKVSEMEGAMTGPT------EREKLEKEKCVLEEDLNKFNAI 256 (458)
Q Consensus 215 ~~~~L~~e~~eLe~l~~~~~------~l~~L~~~~~~L~~D~~Kf~~y 256 (458)
.+..+.+++++|+...+.|+ ...++-++...|+.-+..|..|
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~ 51 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREY 51 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777666664 2334444455554444444444
No 148
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=57.51 E-value=51 Score=23.81 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFK 296 (458)
Q Consensus 258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~ 296 (458)
...+.|++.+-+.-..+.+|+...+.++..++.|+..|+
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 455666666666667777777777777888888777765
No 149
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=57.29 E-value=95 Score=26.82 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q 012695 273 EKEREIGKKVEEHKRICEENEEFKKRVKLQTINA 306 (458)
Q Consensus 273 ~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~ 306 (458)
.+.+.+...+.++..++-+-.++-..+..|+.++
T Consensus 33 ~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~ 66 (150)
T 4dci_A 33 EISNGIANADQQLAQLEQEGQTVVDQVRRQSANP 66 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4455555666666777777777767777776553
No 150
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=57.28 E-value=30 Score=21.33 Aligned_cols=25 Identities=40% Similarity=0.675 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 245 VLEEDLNKFNAIIGELNMRKEKMEK 269 (458)
Q Consensus 245 ~L~~D~~Kf~~yi~~~~~k~~~~e~ 269 (458)
.|++|+.|++..+..++.+...++.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777666665555543
No 151
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.16 E-value=57 Score=26.23 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012695 283 EEHKRICEENEEFKKRV 299 (458)
Q Consensus 283 ~el~~l~~E~~~L~~~v 299 (458)
.+++.++.|+++|+..|
T Consensus 75 ~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 75 EDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 152
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=56.95 E-value=29 Score=23.33 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 309 VERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 309 i~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
|+|+.+|++..++.|..+..++.+|
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 153
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=56.89 E-value=61 Score=24.48 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
++.+...++.++..++..++....+-..++.|.+.+..++
T Consensus 12 ~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 12 VEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555444444444444444444443
No 154
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=56.57 E-value=67 Score=24.88 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 399 ESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHI 444 (458)
Q Consensus 399 ~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~ 444 (458)
..|+..-........+|..+|++.++.+.+.|...+.++..|..-+
T Consensus 31 k~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 31 KEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666667888888888887777777777666655433
No 155
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=56.53 E-value=18 Score=23.22 Aligned_cols=27 Identities=7% Similarity=0.236 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 422 QSSEMAAKIEGKRKRIDALQFHINEVS 448 (458)
Q Consensus 422 ~l~~~~~~i~~k~~e~~~Le~~~~~l~ 448 (458)
........|++.+...+-|+.+++.||
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 344566777777888888888777654
No 156
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=56.51 E-value=98 Score=26.73 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=0.0
Q ss_pred HHHhCCC
Q 012695 185 NYIEGKD 191 (458)
Q Consensus 185 ~fl~g~d 191 (458)
-|+.|.+
T Consensus 14 ~~~~~~~ 20 (152)
T 4fla_A 14 LYFQGAG 20 (152)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 3667765
No 157
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=55.60 E-value=51 Score=23.17 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 411 ~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
....++..|..+-..+.+.+.+-|.+|..|..++++|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555666677777777777777766655
No 158
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=55.59 E-value=32 Score=33.67 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEK 269 (458)
Q Consensus 241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~ 269 (458)
++...|.+++.+++..|...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~ 33 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSE 33 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 34444555555555544444444444433
No 159
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=55.48 E-value=1.1e+02 Score=27.05 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER 276 (458)
Q Consensus 237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~ 276 (458)
..++.....|..+..+++..+..++.....++..+..++.
T Consensus 45 ~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 45 ESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888887777777777777666666654
No 160
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.06 E-value=1.1e+02 Score=26.66 Aligned_cols=35 Identities=9% Similarity=0.272 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450 (458)
Q Consensus 416 ~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q 450 (458)
...++...+.+...+.+++.-++.|+.++..|+.-
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666677777778888888888887777653
No 161
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=53.92 E-value=65 Score=25.40 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
.++...|+.....+...++..+.+++.+...++.+.+.|...
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888888888888888888888888888888887653
No 162
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=53.90 E-value=69 Score=26.94 Aligned_cols=57 Identities=7% Similarity=0.153 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 396 PALESFADDVKRSSVEKLEELISLQQQSSEMA----------AKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 396 ~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~----------~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+.+..+++++...+..+...+.+|++.+.-+. ..|...|.-|+++..++..++.+|.
T Consensus 63 ~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 63 EELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788888888888888888888877543 2478888899999999999988763
No 163
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=53.71 E-value=84 Score=25.10 Aligned_cols=27 Identities=22% Similarity=0.614 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 262 MRKEKMEKLVEEKEREIGKKVEEHKRI 288 (458)
Q Consensus 262 ~k~~~~e~~l~~l~~el~~~~~el~~l 288 (458)
.+..++..+|.+++.+++......+.+
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl 41 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREAL 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666665555444443333
No 164
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=53.69 E-value=2e+02 Score=29.55 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 012695 287 RICEENEEFKK 297 (458)
Q Consensus 287 ~l~~E~~~L~~ 297 (458)
.|++|++.+++
T Consensus 45 ~i~aeNeaikk 55 (497)
T 3iox_A 45 ALTAENTAIKK 55 (497)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555543
No 165
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=53.10 E-value=89 Score=25.22 Aligned_cols=7 Identities=0% Similarity=-0.102 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012695 315 ELQAVER 321 (458)
Q Consensus 315 E~~~L~~ 321 (458)
....|+.
T Consensus 66 ~~~~L~~ 72 (103)
T 4h22_A 66 AHSILQF 72 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 166
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=52.73 E-value=4.4 Score=38.80 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=31.0
Q ss_pred CCCCCC---HHHHHHHHHHHHHHhccCCCCCCCCCC---CCCCHHHHHHHHHHH
Q 012695 52 ADLYTD---RSHQSSAIRAINAHLSSHSFHIAFPLK---QVPSVKDITDVIKFL 99 (458)
Q Consensus 52 pRpl~D---K~~q~~~~~~I~~fL~~~~f~~s~k~l---~~PT~KdF~~If~fL 99 (458)
-|||+| .+|.+=....|+++|.++.-.+|++.+ .+.+..|.+...+.|
T Consensus 179 EkPLSdLG~~sYr~YW~~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 179 EKPLSDLGKLSYRSYWSWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 499998 779999999999999886645555433 456666666666554
No 167
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=52.40 E-value=77 Score=24.28 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 398 LESFADDVKRSSVEKLEELISLQQQSS--------EMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 398 L~~l~~~i~~~~~~~~~e~~~l~~~l~--------~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
|.+|-+++...-.++..-..+|.+.-. -++..+...+..|++|+.++.+++.+|..-
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555554444444444332 245567778889999999999999999764
No 168
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=52.36 E-value=1.4e+02 Score=28.85 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=39.1
Q ss_pred CcchHhHHHHHHHhcCCCCccccccccCCCCCCChHHHHHHHHHHHHHHh
Q 012695 108 TTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIAS 157 (458)
Q Consensus 108 ~~k~EeEv~~~lK~L~YP~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~ 157 (458)
....-.+|..+|..-|||.+||...|.+| |=-.|++++.||...+-
T Consensus 14 q~~~~~~i~~fL~~~~~~~~is~k~L~~P----t~KdF~~if~fL~~~id 59 (315)
T 2ve7_A 14 IQQCIRQLCEFLTENGYAHNVSMKSLQAP----SVKDFLKIFTFLYGFLC 59 (315)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCCTGGGSSC----CHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhcCCCCCCCcccCCCC----CHHHHHHHHHHHHHhcC
Confidence 34567889999999999999998888887 34899999999998765
No 169
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=52.35 E-value=97 Score=25.46 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhh
Q 012695 289 CEENEEFKKRVKLQ 302 (458)
Q Consensus 289 ~~E~~~L~~~v~~Q 302 (458)
+.++..|++.|+.-
T Consensus 68 E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 68 ENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHH
Confidence 33444444444333
No 170
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=52.18 E-value=78 Score=24.32 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
++.+...++.++..++..++....+-..++.|.+.+..++
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433
No 171
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=51.63 E-value=90 Score=24.88 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 394 ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
+...+..|...+........+|+..|+.+++.+. ....+...|..+..-|+.+|+.|
T Consensus 34 Ls~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE----~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 34 MATTFARLCQQVDMTQKHLEEEIARLSKEIDQLE----KMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHH
Confidence 3345677777777777777778878877776663 33344445555555555555555
No 172
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=50.91 E-value=80 Score=24.04 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHh
Q 012695 306 ARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLG 345 (458)
Q Consensus 306 ~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~ 345 (458)
++.|+.+..|++.|+..+..+...+..++.++.++|-++.
T Consensus 36 I~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 36 IAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888999999999999999999888888888776554
No 173
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=50.06 E-value=45 Score=28.62 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 012695 317 QAVERDIADAENARNE 332 (458)
Q Consensus 317 ~~L~~~i~~l~~~~~~ 332 (458)
..|.++++.....+..
T Consensus 118 qgLrRDLeASReAKKq 133 (146)
T 2xnx_M 118 QSLRRDLDASREAKKQ 133 (146)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555544444433
No 174
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=49.88 E-value=69 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMR 263 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k 263 (458)
.+.....++..|+.++.||+.++..++.+
T Consensus 63 ~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 63 QIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56677778888888888888888887654
No 175
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=49.68 E-value=97 Score=24.65 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 398 LESFADDVKRSSVEKLEELISLQQQSS--------EMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 398 L~~l~~~i~~~~~~~~~e~~~l~~~l~--------~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
|..|-+++...-.++..-..+|++.-. -++..+...+..|++|+.++.+++.+|+..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665544444444444444332 245567777889999999999999999764
No 176
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=49.11 E-value=2.1e+02 Score=28.39 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=24.4
Q ss_pred CCccccccch-hhchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 012695 381 TPSEVMGVDY-KSTLKPALESFADDVKRSSVE---KLEELISLQQQSSEM 426 (458)
Q Consensus 381 ~~~ei~~~d~-k~~ik~~L~~l~~~i~~~~~~---~~~e~~~l~~~l~~~ 426 (458)
.|..++-.+. +..|++.|.++..++.+.... ++.+...|+..++..
T Consensus 293 ~~~~~~~~e~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~ 342 (406)
T 4dyl_A 293 EPGELQLNELTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNE 342 (406)
T ss_dssp -TTCCCCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445542222 356778888887777553333 344555555555433
No 177
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=49.04 E-value=96 Score=27.45 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=3.2
Q ss_pred HHHHHhhcC
Q 012695 296 KKRVKLQTI 304 (458)
Q Consensus 296 ~~~v~~Q~~ 304 (458)
+.++...++
T Consensus 137 ~~em~KeGi 145 (175)
T 3lay_A 137 DVAMAQAGI 145 (175)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 333333333
No 178
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.80 E-value=38 Score=22.80 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhH
Q 012695 312 MRRELQAVERDIADAENARNEWESKTWDLDSK 343 (458)
Q Consensus 312 mn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~ 343 (458)
+-+.++++.++|++.+.++.+++.+..++|-.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44577888888888888888888887776653
No 179
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=48.33 E-value=59 Score=21.80 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 417 ISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 417 ~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
.+|+.....+...+.++.+.+++|+.+..-|.+-+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 45666666677777777777777777766665543
No 180
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.01 E-value=29 Score=29.57 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (458)
Q Consensus 237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el 278 (458)
.....+...|..++..-.......+....+.+..++.+...|
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666665555555556666666666666655444
No 181
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=47.71 E-value=29 Score=27.88 Aligned_cols=35 Identities=6% Similarity=0.172 Sum_probs=21.0
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 299 VKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (458)
Q Consensus 299 v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l 333 (458)
++.+++.+..-..|+.....-+.+++.++..+..+
T Consensus 59 lE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 59 LEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455655566667666666666666665555443
No 182
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.13 E-value=98 Score=23.98 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 012695 287 RICEENEEFKKRVKLQTIN 305 (458)
Q Consensus 287 ~l~~E~~~L~~~v~~Q~~S 305 (458)
.++.++..|++.|+.-.++
T Consensus 46 ~~E~d~~~LrkdvD~a~l~ 64 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLA 64 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444555555544444433
No 183
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=46.87 E-value=59 Score=25.37 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012695 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFL 455 (458)
Q Consensus 415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~ 455 (458)
.+..|++-+..+...++++|.+....+....+-.+.+..|+
T Consensus 25 ~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~ 65 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 65 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888899999988888887777777777764
No 184
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=46.85 E-value=1.6e+02 Score=26.37 Aligned_cols=50 Identities=10% Similarity=0.188 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HhHHhhHHHHHHHHHHHH
Q 012695 303 TINARDVERMRRELQAVERDIADAENARNEWESKTWDL--DSKLGRKFKELEALSMEC 358 (458)
Q Consensus 303 ~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~--e~~~~~~~~~lE~~v~~y 358 (458)
++|++-+ ++.|+..+.+.+..-+++.+.--+. ++.+..-+...-..-..|
T Consensus 123 ~~sp~~L------~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~y 174 (192)
T 2p22_C 123 KYGDIAL------KKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQY 174 (192)
T ss_dssp TSSHHHH------HHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHH------HHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 5665544 3455556666666666665555443 444444444444444444
No 185
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=46.54 E-value=41 Score=25.79 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 250 LNKFNAIIGELNMRKEKMEKLVEEKEREIG 279 (458)
Q Consensus 250 ~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~ 279 (458)
+.|-.+||..++.....+...+..+..+.+
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888877777666655555544443
No 186
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=46.42 E-value=1.4e+02 Score=25.56 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
.-..+...|+..+......-.....+......++..++.+|+..+...+.....+.+|...
T Consensus 49 ~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEee 109 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEE 109 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555566666666666666666666666555555555555554433
No 187
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=45.93 E-value=48 Score=26.96 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 429 KIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 429 ~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
.+.+...++..|...++.++..=+||
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkERDFY 44 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIEREFY 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444433333
No 188
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=45.66 E-value=19 Score=21.27 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 425 EMAAKIEGKRKRIDALQFHINEVSA 449 (458)
Q Consensus 425 ~~~~~i~~k~~e~~~Le~~~~~l~~ 449 (458)
.++.+....+.++++|+-++.++++
T Consensus 4 rlkqknarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 3455566677777788777777653
No 189
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=45.47 E-value=1e+02 Score=23.72 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012695 269 KLVEEKEREIGKKVEEHKRICEE 291 (458)
Q Consensus 269 ~~l~~l~~el~~~~~el~~l~~E 291 (458)
..|..++..++.+..+++.++.+
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444445555555555555443
No 190
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=45.22 E-value=28 Score=25.27 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 012695 285 HKRICEENEEF 295 (458)
Q Consensus 285 l~~l~~E~~~L 295 (458)
+..+..++..|
T Consensus 45 v~~L~~e~~~L 55 (62)
T 1jnm_A 45 ANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 191
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=45.18 E-value=1.2e+02 Score=24.29 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012695 268 EKLVEEKEREIGKKVEEHKRI 288 (458)
Q Consensus 268 e~~l~~l~~el~~~~~el~~l 288 (458)
..++.++..+++....+...+
T Consensus 64 ~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333333
No 192
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=44.80 E-value=2.2e+02 Score=29.05 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 012695 262 MRKEKMEKLVEEK 274 (458)
Q Consensus 262 ~k~~~~e~~l~~l 274 (458)
..++.++..+.++
T Consensus 95 ~dl~~Le~~l~~i 107 (461)
T 3ghg_B 95 NSVDELNNNVEAV 107 (461)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333444333333
No 193
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=44.57 E-value=55 Score=20.39 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 270 LVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 270 ~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
++...++|-.+.++++..+++|+..++--|
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaaikyli 32 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAIKYLI 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666777777777776665444
No 194
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=44.22 E-value=79 Score=26.15 Aligned_cols=43 Identities=9% Similarity=0.221 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 256 yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
-++-++.+++.++..+..+++.+..+..++..+...+.++...
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445666677777777777777777777777777777666554
No 195
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=44.19 E-value=1.1e+02 Score=23.69 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 399 ESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQF 442 (458)
Q Consensus 399 ~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~ 442 (458)
..++..-........+|..+|++.++.+.+.|...+.++..|..
T Consensus 23 k~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 23 KEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666778888888888877777777776666554
No 196
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=44.09 E-value=25 Score=22.37 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 283 EEHKRICEENEEFKKRVK 300 (458)
Q Consensus 283 ~el~~l~~E~~~L~~~v~ 300 (458)
.+-..++.|+.+|+..+.
T Consensus 14 ~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 14 SKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHhh
Confidence 334555666666665544
No 197
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=43.92 E-value=34 Score=25.50 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 262 ~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
..+...+..|.+++.++..+..++..++.+..+++..+.
T Consensus 18 ~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 18 KILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455667777777777777778888777777766554
No 198
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=43.46 E-value=54 Score=23.93 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 410 VEKLEELISLQQQSSEMAAKIEGKRKRIDALQF 442 (458)
Q Consensus 410 ~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~ 442 (458)
.-+++.+..|+.++..++.....++.+++.|..
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666665544444444444433
No 199
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=43.45 E-value=1.8e+02 Score=27.09 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 244 CVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294 (458)
Q Consensus 244 ~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~ 294 (458)
....+++..+..-|.++......+.++|+.++.+-...+.++..++..++-
T Consensus 173 ~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief 223 (242)
T 3uux_B 173 NSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDF 223 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555566665555544445555555444333
No 200
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=43.31 E-value=1.2e+02 Score=23.94 Aligned_cols=25 Identities=8% Similarity=0.221 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 305 NARDVERMRRELQAVERDIADAENA 329 (458)
Q Consensus 305 S~~di~rmn~E~~~L~~~i~~l~~~ 329 (458)
++.||.+=++-...+.+.|+.++..
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555565555554443
No 201
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.12 E-value=42 Score=25.64 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 250 LNKFNAIIGELNMRKEKMEKLVEEKERE 277 (458)
Q Consensus 250 ~~Kf~~yi~~~~~k~~~~e~~l~~l~~e 277 (458)
+.+-.+||..++.....++..+..++.+
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777766666665444444433
No 202
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=42.98 E-value=30 Score=27.99 Aligned_cols=91 Identities=13% Similarity=0.266 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHccC-CCCCcchHhHHHHHHHhcCCCCccccccccCCCCCCChHHHHHHHHHHHHHHhhhhhhhcCC
Q 012695 88 SVKDITDVIKFLISQLD-YPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNS 166 (458)
Q Consensus 88 T~KdF~~If~fL~~~iD-~~~~~k~EeEv~~~lK~L~YP~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~ 166 (458)
+.+-...+.+.+....| -++.-+..|++.++|..|=- +++|- .+.|..|+.---+..||+.|..+... ..
T Consensus 6 ~~~~IAe~v~~FIT~mDaLKLn~~a~DqLhPlL~dL~~--sl~r~----~~lp~dfegk~kv~~Wl~~Ln~M~As---de 76 (102)
T 2j9w_A 6 LNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELME--TMNRM----SHLPPDFEGREKVSQWLQKLSSMSAS---DE 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHH--HHHHC----TTSCTTCHHHHHHHHHHHHHHTSCTT---CB
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchhHHhhhhHHHHHHH--hcccC----CCCCCCCccHHHHHHHHHHHcCCccc---cc
Confidence 35666677777777777 45555677899888887631 22222 12356798888999999999876421 11
Q ss_pred cccccch-HHHHHHHHHHHHHHh
Q 012695 167 KAFVENN-SMYMYASDSYLNYIE 188 (458)
Q Consensus 167 ~~~~~~~-~~~~y~~~~Y~~fl~ 188 (458)
-+...-+ .+|+ +-.+|..|..
T Consensus 77 L~e~q~RqllfD-le~aY~~F~~ 98 (102)
T 2j9w_A 77 LDDSQVRQMLFD-LESAYNAFNR 98 (102)
T ss_dssp CCHHHHHHHHHH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHHHHHHHHH
Confidence 1111112 3444 6778887753
No 203
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=42.88 E-value=61 Score=22.58 Aligned_cols=43 Identities=33% Similarity=0.550 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 404 DVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVS 448 (458)
Q Consensus 404 ~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~ 448 (458)
++.++..+..+++..|+++...+++++= ++.++.|+.++.++.
T Consensus 3 ~~errr~e~ld~l~~LEkqF~~LkEqlY--~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 3 DYERRRSECVSEMLDLEKQFSELKEKLF--RERLSQLRLRLEEVG 45 (49)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4556777888899999998888887774 345666666665553
No 204
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=42.81 E-value=38 Score=23.92 Aligned_cols=14 Identities=29% Similarity=0.128 Sum_probs=7.6
Q ss_pred CChHHHHHHHHHHH
Q 012695 233 PTEREKLEKEKCVL 246 (458)
Q Consensus 233 ~~~l~~L~~~~~~L 246 (458)
..+++.|.++...|
T Consensus 24 ggrieelkkkweel 37 (67)
T 1lq7_A 24 GGRIEELKKKWEEL 37 (67)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 45566666555444
No 205
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=42.76 E-value=26 Score=28.03 Aligned_cols=88 Identities=16% Similarity=0.282 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHccC-CCCCcchHhHHHHHHHhcCCCCccccccccCCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCc
Q 012695 89 VKDITDVIKFLISQLD-YPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSK 167 (458)
Q Consensus 89 ~KdF~~If~fL~~~iD-~~~~~k~EeEv~~~lK~L~YP~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~ 167 (458)
.|-...+.+.+....| -+++-+..|++.+.|..|=- +++|- + |..|+.---+..||+.|..+... ..-
T Consensus 4 ~~~iAe~~~~FIT~mDaLKL~~~a~DqLhP~L~dL~~--sl~r~-----~-~~dfegk~kv~~Wl~~Ln~M~As---deL 72 (96)
T 2j9u_A 4 AKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLI--SINRV-----T-RDDFENRSKLIDWIVRINKLSIG---DTL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHH--HHHHH-----C-CCCCTTHHHHHHHHHHHHTSCTT---CBC
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHhhCchHHHHHH--HccCC-----C-CCCCchHHHHHHHHHHHcCCccc---ccC
Confidence 5566667777777777 45555677899888887731 23333 2 45788888999999999876421 111
Q ss_pred ccccch-HHHHHHHHHHHHHHh
Q 012695 168 AFVENN-SMYMYASDSYLNYIE 188 (458)
Q Consensus 168 ~~~~~~-~~~~y~~~~Y~~fl~ 188 (458)
+...-+ .+|+ +-.+|..|..
T Consensus 73 ~e~q~RqllfD-le~aY~~F~~ 93 (96)
T 2j9u_A 73 TETQIRELLFD-LELAYKSFYA 93 (96)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHHHHH
Confidence 111112 3444 6778888853
No 206
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.73 E-value=90 Score=22.32 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012695 280 KKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 280 ~~~~el~~l~~E~~~L~~~ 298 (458)
....++..+..|+..|+..
T Consensus 40 ~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 40 QLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555444
No 207
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.59 E-value=52 Score=21.27 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 012695 285 HKRICEENEEFKKRVK 300 (458)
Q Consensus 285 l~~l~~E~~~L~~~v~ 300 (458)
...++.|..+|+..+.
T Consensus 17 ~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 17 LWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3444555555555443
No 208
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=42.57 E-value=33 Score=31.35 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012695 251 NKFNAIIGELNMRKEKMEKLV 271 (458)
Q Consensus 251 ~Kf~~yi~~~~~k~~~~e~~l 271 (458)
.-|-.|+..+.......-..|
T Consensus 12 ~~~w~Y~~~l~~~a~~~v~~l 32 (216)
T 2lem_A 12 DFANVYVDAVKDSGRDYVSQF 32 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457788888776655544333
No 209
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=42.33 E-value=79 Score=24.14 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 418 SLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (458)
Q Consensus 418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~ 445 (458)
.|++....+...++..+.++..|..++.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445555555555555544
No 210
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=42.06 E-value=47 Score=26.35 Aligned_cols=28 Identities=4% Similarity=0.203 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 426 MAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 426 ~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
-...|...+.-++.++.++..|...++.
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~~~~~ 93 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKLRFDR 93 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677888888888888888877653
No 211
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.04 E-value=1.3e+02 Score=25.52 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 012695 282 VEEHKRICEENEEF 295 (458)
Q Consensus 282 ~~el~~l~~E~~~L 295 (458)
+.+...++.|.++|
T Consensus 66 E~~~~~ie~ElE~L 79 (135)
T 2e7s_A 66 EEEADKLNKEVEDL 79 (135)
T ss_dssp HHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 212
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=41.97 E-value=1.3e+02 Score=23.75 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=13.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHH
Q 012695 303 TINARDVERMRRELQAVERDI 323 (458)
Q Consensus 303 ~~S~~di~rmn~E~~~L~~~i 323 (458)
++|.++|.+|...|..|++..
T Consensus 17 gls~eev~~lKq~RRtlKNRg 37 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRG 37 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhH
Confidence 666666666666666666554
No 213
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=41.80 E-value=1.2e+02 Score=23.66 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHH
Q 012695 288 ICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353 (458)
Q Consensus 288 l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~ 353 (458)
+......|+..++.-++|.++.-+ ..++|...+..++.+..+-.+.+.+++..+...+..++.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~k---Qk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~ 64 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIK---QKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLEL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
No 214
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=41.68 E-value=95 Score=31.89 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 012695 413 LEELISLQQQSSEMAAKIE-----GKRKRIDALQFHINEVSA 449 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~-----~k~~e~~~Le~~~~~l~~ 449 (458)
..........++.++..|. ....++..+++.+..|+.
T Consensus 240 e~~~~~~~~~I~~Ik~~IGf~~~~sI~trVttnet~is~L~~ 281 (487)
T 2bsg_A 240 DTKQTTVESDISAIKTSIGYPGNNSIITSVNTNTDNIASINL 281 (487)
T ss_pred hhhhhhhhhHHHHHHHhhCCCCCCchhheeecccchhHHhhc
Confidence 3344444555555555544 444444445554444443
No 215
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.60 E-value=88 Score=28.01 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
++++...-..-++.+..|......+++....|++.|
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L 46 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQL 46 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 216
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=41.49 E-value=1.6e+02 Score=24.69 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=13.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHH
Q 012695 302 QTINARDVERMRRELQAVERDIADAE 327 (458)
Q Consensus 302 Q~~S~~di~rmn~E~~~L~~~i~~l~ 327 (458)
=+++.+++.+=..=...+...|..++
T Consensus 100 F~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 100 FKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666654444444444444433
No 217
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=41.48 E-value=1.2e+02 Score=27.53 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 399 ESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHI 444 (458)
Q Consensus 399 ~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~ 444 (458)
..|+..-........+|..+|++.|+.+.+.|...+.++..|..-+
T Consensus 100 k~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 100 KEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677888888888888777777777776665443
No 218
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.39 E-value=68 Score=32.24 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGEL 260 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~ 260 (458)
++.++.+...|+..+.+.+..+..+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~ 29 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDT 29 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444333333333
No 219
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.16 E-value=1.3e+02 Score=23.54 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~ 451 (458)
......++..+..++.....++.+|+.|+.++..|..-+
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666677777777777777777776666544
No 220
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=40.78 E-value=43 Score=22.68 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEE 284 (458)
Q Consensus 255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~e 284 (458)
+.+.++..+.+.++++|..++..+++....
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777666666655544443
No 221
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.75 E-value=33 Score=21.95 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012695 282 VEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 282 ~~el~~l~~E~~~L~~~v~ 300 (458)
-.+...++.|..+|+..+.
T Consensus 14 l~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 14 LSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHHc
Confidence 3444556666666666554
No 222
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=40.74 E-value=2e+02 Score=26.64 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=7.3
Q ss_pred HHHHHHHHHhCCCC
Q 012695 179 ASDSYLNYIEGKDG 192 (458)
Q Consensus 179 ~~~~Y~~fl~g~d~ 192 (458)
+.+.-..|=.++|+
T Consensus 49 ~A~~Ls~WG~~edd 62 (234)
T 3plt_A 49 AAKQLSLWGADNDD 62 (234)
T ss_dssp HHHHHHHHHHTSCH
T ss_pred HHHHHHHHhcCCCc
Confidence 34455567555543
No 223
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.88 E-value=1.3e+02 Score=23.20 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
++|+.+.....-....++.+-+.....|.++++.++.++.++
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666777777777777777777777664
No 224
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=39.81 E-value=1.3e+02 Score=23.15 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 399 ESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQ 441 (458)
Q Consensus 399 ~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le 441 (458)
..++..-........+|..+|++.++...+.|...+.+...|.
T Consensus 19 k~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 19 KEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666677888999888888888777777654443
No 225
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=39.48 E-value=2.9e+02 Score=27.28 Aligned_cols=18 Identities=6% Similarity=-0.221 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 012695 350 ELEALSMECNQAMKRLKL 367 (458)
Q Consensus 350 ~lE~~v~~yN~~~~~l~l 367 (458)
=...++.-|-.-+.+-|.
T Consensus 144 fa~~L~rMY~r~Ae~~g~ 161 (365)
T 1gqe_A 144 WASMLERMYLRWAESRGF 161 (365)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 344556667666665543
No 226
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=39.12 E-value=60 Score=24.74 Aligned_cols=30 Identities=7% Similarity=0.242 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
.|+.++..+...+++.+.++..|+.++.++
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555666666666666665543
No 227
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=38.85 E-value=1.9e+02 Score=29.30 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 416 LISLQQQSSEMAAKIEGK 433 (458)
Q Consensus 416 ~~~l~~~l~~~~~~i~~k 433 (458)
+...+.+|+.+...+.+.
T Consensus 227 l~~~~~~Ld~lA~~la~~ 244 (463)
T 2d4y_A 227 LDQTRNTLGQLALAFADA 244 (463)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666665555443
No 228
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=38.71 E-value=1.4e+02 Score=27.55 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=34.4
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 392 STLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINE 446 (458)
Q Consensus 392 ~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~ 446 (458)
..||..|..-.+.++.+.......+.+.+.+.+..+..+++.|..++.+...+++
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666666666666666666666666666666666666666655555544
No 229
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=38.37 E-value=40 Score=24.11 Aligned_cols=6 Identities=33% Similarity=0.860 Sum_probs=2.4
Q ss_pred CCcccc
Q 012695 381 TPSEVM 386 (458)
Q Consensus 381 ~~~ei~ 386 (458)
||.+|.
T Consensus 4 Tp~dI~ 9 (57)
T 2wuj_A 4 TPNDIH 9 (57)
T ss_dssp CHHHHT
T ss_pred CHHHHh
Confidence 344443
No 230
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=38.34 E-value=66 Score=27.75 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695 244 CVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323 (458)
Q Consensus 244 ~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i 323 (458)
.+|..-+.++.+.+..+.....++. .++..++.+++.+-..|.+-.+|.++|+. +.+.|-+..
T Consensus 75 ~~L~~~~~~~~~i~~~Lk~~k~k~~--------------~~v~~~~~~i~~~i~kIK~~~i~~~~Id~---~y~~lv~~~ 137 (148)
T 3gn4_A 75 GTLKKRLDKFNEVVSALKDGKQEMS--------------KQVKDLEISIDALMAKIKSTMMTREQIQK---EYDALVKSS 137 (148)
T ss_dssp HHHHHC--------------CCHHH--------------HHHHHHHHHHHHHHHHHTTSCCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH--------------HHHHHHHHHHHHHHHHhccCCCCHHHHHH---HHHHHHHHH
Confidence 3344445455555444443333343 34455555666666777777888877654 455554444
Q ss_pred H
Q 012695 324 A 324 (458)
Q Consensus 324 ~ 324 (458)
+
T Consensus 138 ~ 138 (148)
T 3gn4_A 138 A 138 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 231
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=38.17 E-value=8.7 Score=38.49 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=13.3
Q ss_pred ccccCCCCCCChHHH
Q 012695 131 STLRSPNSPHNWPAY 145 (458)
Q Consensus 131 S~L~avG~pHsWP~~ 145 (458)
+|++|+|.||.|||=
T Consensus 340 aQ~sa~G~pHG~PHE 354 (423)
T 3j0f_I 340 AQESAPGDPHGWPHE 354 (423)
T ss_pred eeccCCCCCCCCchh
Confidence 678899999999984
No 232
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.00 E-value=45 Score=24.37 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 417 ISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 417 ~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
..=++.++.+...++.+..+.+.|.+++..|.+++.
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888888999999999999999988887764
No 233
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=37.41 E-value=64 Score=20.55 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 282 VEEHKRICEENEEFKKRV 299 (458)
Q Consensus 282 ~~el~~l~~E~~~L~~~v 299 (458)
-.+...++.|..+|+..+
T Consensus 14 l~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 14 LSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 334455556666666554
No 234
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=36.97 E-value=7.6 Score=37.04 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=37.7
Q ss_pred CCCCCC---HHHHHHHHHHHHHHhccCCCCCCCCCC---CCCCHHHHHHHHHHH
Q 012695 52 ADLYTD---RSHQSSAIRAINAHLSSHSFHIAFPLK---QVPSVKDITDVIKFL 99 (458)
Q Consensus 52 pRpl~D---K~~q~~~~~~I~~fL~~~~f~~s~k~l---~~PT~KdF~~If~fL 99 (458)
-|||+| .+|.+-....|+++|.+++-.+|++.+ .+.+..|.+...+.|
T Consensus 179 EkPLSdLG~~sY~~YW~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 179 EKPLSDLGLLSYRAYWSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 699999 779999999999999998766665443 566777777776665
No 235
>2yew_C E2 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=36.71 E-value=8.5 Score=38.47 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=13.0
Q ss_pred ccccCCCCCCChHH
Q 012695 131 STLRSPNSPHNWPA 144 (458)
Q Consensus 131 S~L~avG~pHsWP~ 144 (458)
+|.+|+|.||.|||
T Consensus 338 aQ~sa~G~pHG~PH 351 (421)
T 2yew_C 338 AQKSSSSSAHGNPI 351 (421)
T ss_dssp CCCSSCCSSCSCSS
T ss_pred eeccCCCCCCCCch
Confidence 67899999999998
No 236
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=36.30 E-value=51 Score=21.31 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 012695 286 KRICEENEEFKKRV 299 (458)
Q Consensus 286 ~~l~~E~~~L~~~v 299 (458)
..++.|..+|+..+
T Consensus 18 ~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 18 WHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444443
No 237
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=36.22 E-value=3.3e+02 Score=26.90 Aligned_cols=67 Identities=9% Similarity=0.195 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCCHHHHHHH
Q 012695 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFK-------KRVKLQTINARDVERM 312 (458)
Q Consensus 246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~-------~~v~~Q~~S~~di~rm 312 (458)
+....+.++.-+..+.....++++.+....++....+.++..++-+.-.|. ..+...+++.++|...
T Consensus 203 ~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~i~~~ 276 (373)
T 3hhm_B 203 IMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEW 276 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 444444444444555555555554444444433333444444433333333 3455566666666443
No 238
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.21 E-value=1.4e+02 Score=22.77 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (458)
Q Consensus 243 ~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~ 297 (458)
....+.++.-+..--+.+..-..+++.-|..++.|-.....+++.++...++|..
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555555555555555555555555555555543
No 239
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=36.12 E-value=1.5e+02 Score=23.00 Aligned_cols=18 Identities=11% Similarity=-0.077 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 238 KLEKEKCVLEEDLNKFNA 255 (458)
Q Consensus 238 ~L~~~~~~L~~D~~Kf~~ 255 (458)
.+-++.+.|..|+..-+.
T Consensus 40 ~~l~~h~~l~~ei~~~~~ 57 (119)
T 3uun_A 40 DQFHTHEGYMMDLTAHQG 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 333444444444433333
No 240
>3j0c_B E2 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=36.12 E-value=8.6 Score=38.45 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=12.9
Q ss_pred ccccCCCCCCChHH
Q 012695 131 STLRSPNSPHNWPA 144 (458)
Q Consensus 131 S~L~avG~pHsWP~ 144 (458)
+|++|+|.||.|||
T Consensus 340 aQ~sa~G~pHG~PH 353 (423)
T 3j0c_B 340 AQETAPGNPHGLPH 353 (423)
T ss_dssp ECCCSSCCCCCSSS
T ss_pred eeccCCCCCCCCch
Confidence 67889999999998
No 241
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=36.04 E-value=2.5e+02 Score=25.54 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 012695 347 KFKELEALSMECNQAMKRLKL 367 (458)
Q Consensus 347 ~~~~lE~~v~~yN~~~~~l~l 367 (458)
..+-++.+...+...+.+.|+
T Consensus 138 l~eGvemi~k~l~~~L~k~Gv 158 (213)
T 4ani_A 138 ILQGMEMVYRSLVDALKKEGV 158 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHCCC
Confidence 445667777778888888886
No 242
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=35.87 E-value=3.6e+02 Score=27.29 Aligned_cols=126 Identities=10% Similarity=0.087 Sum_probs=71.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVE 283 (458)
Q Consensus 204 kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~ 283 (458)
.|..++++....+..+...-.+|- ..+...-..++.+...|+..-..+.+.....+.+.+... . +..--.
T Consensus 137 ~l~~EL~~~e~~i~~v~~~G~~Li--~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~-~-------~~QF~~ 206 (450)
T 3r6n_A 137 IRMSQLEVKEKELNKLKQESDQLV--LNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENA-A-------YFQFFE 206 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHH
T ss_pred HHHHHHHHchHHHHHHHHHHHHHH--HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHhHHH
Confidence 455555555555555544444442 223334566677777776655555554444443333321 1 111222
Q ss_pred HHHHHHHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 284 EHKRICEENEEFKKRVKLQ-----TINARDVERMRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 284 el~~l~~E~~~L~~~v~~Q-----~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
+..+++.=+.+.+..|... |.+..-++.|-+..+.+++++...+..+..|.++...
T Consensus 207 Da~EaesWL~eke~~l~s~y~~D~g~d~~~~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~ 267 (450)
T 3r6n_A 207 EAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKK 267 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555554 5677778888888888888888888888877766544
No 243
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=35.77 E-value=36 Score=28.53 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 217 EELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI 288 (458)
Q Consensus 217 ~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l 288 (458)
..|...-.+|+.+......+..|+.+.+.|+.++.+++.--..-..-.+.++..+...+.|++..+.++...
T Consensus 51 sele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 51 SKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 244
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=35.67 E-value=45 Score=32.95 Aligned_cols=50 Identities=10% Similarity=0.238 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccC-CCCC-CCCCC--------CCCCHHHHHHHHHHHHHccC
Q 012695 52 ADLYTDRSHQSSAIRAINAHLSSH-SFHI-AFPLK--------QVPSVKDITDVIKFLISQLD 104 (458)
Q Consensus 52 pRpl~DK~~q~~~~~~I~~fL~~~-~f~~-s~k~l--------~~PT~KdF~~If~fL~~~iD 104 (458)
..||+- -..=++.+.++|..+ ||+. .+..| ..||...+..-|+||+....
T Consensus 67 ~~~L~g---~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~ 126 (350)
T 4f6o_A 67 KNQLRG---CINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQ 126 (350)
T ss_dssp TTCCSS---HHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCC---HHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhCC
Confidence 356643 223345677888875 8973 22222 23999999999999998764
No 245
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=35.51 E-value=3.6e+02 Score=27.11 Aligned_cols=87 Identities=8% Similarity=0.142 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 212 VSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEE 291 (458)
Q Consensus 212 ~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E 291 (458)
+.+-+..|-.-..+|..+...|..-+.-..-...++.|-.-+...+..+.......+......++-+..+..+...+...
T Consensus 206 lA~~L~SLT~HyDqC~~l~~~~~s~~e~~elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~ 285 (413)
T 4hpq_C 206 LADFLKSFTDHFDKCSALSSRSVSPEDAQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQAT 285 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHhHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555566666666665555666778888889888888888888887777777666666666666666555555
Q ss_pred HHHHHHH
Q 012695 292 NEEFKKR 298 (458)
Q Consensus 292 ~~~L~~~ 298 (458)
...+...
T Consensus 286 ~~~l~~~ 292 (413)
T 4hpq_C 286 LSKLLTE 292 (413)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
No 246
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=35.45 E-value=4.2e+02 Score=28.66 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHH
Q 012695 314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQ 360 (458)
Q Consensus 314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~ 360 (458)
-|++++.++.+++..++++++.-+.+.+.-..--.+++..+.+.|..
T Consensus 402 le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd 448 (716)
T 1zvu_A 402 LEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 448 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 55666666666666666666666666555555567788888888854
No 247
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=35.42 E-value=70 Score=29.70 Aligned_cols=48 Identities=23% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (458)
Q Consensus 257 i~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~ 304 (458)
+++++.++.+++.+++++....+.++..++.++....+|...+...++
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NI 55 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNL 55 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccce
Confidence 455566666666666666655555555566666556666555555443
No 248
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=35.27 E-value=2.3e+02 Score=24.81 Aligned_cols=71 Identities=6% Similarity=0.187 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695 251 NKFNAIIGELNMRKEKMEKLVE--EKEREIG-KKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323 (458)
Q Consensus 251 ~Kf~~yi~~~~~k~~~~e~~l~--~l~~el~-~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i 323 (458)
.-|-.|+..+.......-..|. ++..++. .....+..+......++..+. .++.+-..++..+.+.|.+.+
T Consensus 14 ~~~w~Y~~~l~~~a~~~ve~l~~seL~qqL~~~l~e~~~~l~~~~~~l~~~l~--p~~~e~~~~l~~~~~~Lr~~l 87 (185)
T 3r2p_A 14 DLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEKETEGLRQEM 87 (185)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHSHHHHHTTCCCCTTCSCSSCHHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHH
Confidence 3577888888766655544443 2334442 112223334444566666654 455555666666655544443
No 249
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.25 E-value=1.6e+02 Score=23.02 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q 012695 317 QAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 317 ~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
+.++..|..++.++..++....+
T Consensus 75 e~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 75 ETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333
No 250
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=35.20 E-value=2.4e+02 Score=25.14 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWE 334 (458)
Q Consensus 286 ~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~ 334 (458)
...+++=..+...... +-|-.||+..-...-...+..+.-+.+.+.|.
T Consensus 138 ~e~eeeS~~l~~~F~~-~~~e~dv~~Fl~~y~~~R~~yH~RreK~~rw~ 185 (192)
T 2p22_C 138 KKLDEESSQLETTTRS-IDSADDLDQFIKNYLDIRTQYHLRREKLATWD 185 (192)
T ss_dssp HHHHHHHHHHHHSCSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444433 33456777776666666665554444444443
No 251
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=35.09 E-value=1.4e+02 Score=22.21 Aligned_cols=59 Identities=7% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 394 LKPALESFADDVKRSSVEKLEE--------LISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF 452 (458)
Q Consensus 394 ik~~L~~l~~~i~~~~~~~~~e--------~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~ 452 (458)
+-..|..++.++.........| ...++.........+..-+.++..|...+..|+.+++
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 252
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.94 E-value=1.3e+02 Score=21.75 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 012695 285 HKRICEENEEFKKR 298 (458)
Q Consensus 285 l~~l~~E~~~L~~~ 298 (458)
+..+..++..|+..
T Consensus 46 i~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 46 IANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 253
>2xfc_B E2 envelope glycoprotein; receptor binding, membrane fusion, icosahedral envelo; 9.00A {Chikungunya virus}
Probab=34.78 E-value=8.5 Score=38.50 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=2.3
Q ss_pred ccccCCCCCCChHHHHH
Q 012695 131 STLRSPNSPHNWPAYLA 147 (458)
Q Consensus 131 S~L~avG~pHsWP~~Lg 147 (458)
+|++|+|.||.|||=+-
T Consensus 340 aQ~sa~G~pHG~PHEIi 356 (423)
T 2xfc_B 340 PQLSTNGTAHGHPHEII 356 (423)
T ss_dssp ECC--------------
T ss_pred eeccCCCCCCCCchhhh
Confidence 67899999999999543
No 254
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=34.43 E-value=4e+02 Score=27.42 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
++.++.+....+..+.--.+-+...+.+..+..+-+..++.+|++....+.+...++...
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f 375 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQF 375 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhh
Confidence 344444444444444444555566666666667777777777776665555555544433
No 255
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.23 E-value=1.2e+02 Score=23.59 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 250 LNKFNAIIGELNMRKEKMEKLVEEKER 276 (458)
Q Consensus 250 ~~Kf~~yi~~~~~k~~~~e~~l~~l~~ 276 (458)
+.+-.+||..++.....+...+..+..
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777766666555444433
No 256
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.91 E-value=1.6e+02 Score=22.67 Aligned_cols=51 Identities=6% Similarity=0.049 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695 406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQ 456 (458)
Q Consensus 406 ~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~~ 456 (458)
.+........+..|+.+++.+.=.+++...+++.++.+-+.+=..++..+.
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455667888999999999999999999999999998888888876654
No 257
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.74 E-value=79 Score=20.16 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012695 283 EEHKRICEENEEFKKRV 299 (458)
Q Consensus 283 ~el~~l~~E~~~L~~~v 299 (458)
.+-..++.|..+|+..+
T Consensus 15 ~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 15 XKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 33445555666665544
No 258
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.62 E-value=1.7e+02 Score=22.80 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 272 EEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 272 ~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
..|+.|-.....++..+..|+..|+..+
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444433
No 259
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=33.31 E-value=1.5e+02 Score=22.55 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVS 448 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~ 448 (458)
.....++..+..+......++.+|+.|+.++..|.
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666665554
No 260
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=33.21 E-value=2e+02 Score=26.51 Aligned_cols=60 Identities=5% Similarity=-0.093 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 395 KPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 395 k~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
.+.=..++.-+..+......++..|++.++.....+...+..++....++.++..+++..
T Consensus 159 ~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 159 PGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445667777788888888888999999999999988888888888888888888888764
No 261
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.11 E-value=1.1e+02 Score=20.34 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 012695 288 ICEENEEFKKR 298 (458)
Q Consensus 288 l~~E~~~L~~~ 298 (458)
++.|+..|++.
T Consensus 36 lekeianlrkk 46 (49)
T 3he5_A 36 LEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 262
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=32.70 E-value=39 Score=28.03 Aligned_cols=45 Identities=13% Similarity=0.270 Sum_probs=38.1
Q ss_pred cchHhHHHHHHHhcCCCCccccccccCCCCCCChHHHHHHHHHHHHHHh
Q 012695 109 TKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIAS 157 (458)
Q Consensus 109 ~k~EeEv~~~lK~L~YP~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~ 157 (458)
...-.+|..+|..-|||..|+...|.+|. =-.|++++.||...+.
T Consensus 17 ~~~~~~i~~fL~~~~~~~~is~k~L~~Pt----~kdF~~if~fL~~~id 61 (120)
T 2igp_A 17 QQCIRQLCEFLTENGYAHNVSMKSLQAPS----VKDFLKIFTFLYGFLC 61 (120)
T ss_dssp HHHHHHHHHHHHHTTCSSCCCTTTTSSCC----HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCCCCCCccccCCCC----HHHHHHHHHHHHHhcC
Confidence 45567899999999999999988888764 3799999999998764
No 263
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=32.50 E-value=1.6e+02 Score=22.18 Aligned_cols=52 Identities=13% Similarity=0.051 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH---hhHHHHHHHHHHHHHHHHH
Q 012695 312 MRRELQAVERDIADAENARNEWESKTWDLDSKL---GRKFKELEALSMECNQAMK 363 (458)
Q Consensus 312 mn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~---~~~~~~lE~~v~~yN~~~~ 363 (458)
+..|++.++..|..++.++..+.......-.++ -..+-.++.=+..|..++.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555544444333322222 2233355666677776643
No 264
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=32.37 E-value=1.2e+02 Score=20.90 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHh
Q 012695 288 ICEENEEFKKRVKL 301 (458)
Q Consensus 288 l~~E~~~L~~~v~~ 301 (458)
.++|+.+|++-+..
T Consensus 30 ~eQEieRL~~LLkq 43 (48)
T 3vmx_A 30 KEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555554443
No 265
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=32.30 E-value=1.1e+02 Score=26.04 Aligned_cols=45 Identities=9% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (458)
Q Consensus 257 i~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~ 301 (458)
++-++.+++.++..+..+++.+..+..++..++..+.+++.....
T Consensus 100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 100 ISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777777777787777777766554
No 266
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=32.26 E-value=1.8e+02 Score=24.86 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 012695 241 KEKCVLEEDLNKFNAI 256 (458)
Q Consensus 241 ~~~~~L~~D~~Kf~~y 256 (458)
..+..|..|+..-.+.
T Consensus 66 ~~~~~l~rdleasr~a 81 (146)
T 2xnx_M 66 KELEAITREQEINRNL 81 (146)
T ss_dssp TTTTTHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3334444444333333
No 267
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=32.23 E-value=3.1e+02 Score=25.36 Aligned_cols=161 Identities=8% Similarity=0.039 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 012695 195 DNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN-------MRKEK 266 (458)
Q Consensus 195 e~l~~e~~~kl~~~~~~~~e~~~~L~~e~~eLe~-l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~-------~k~~~ 266 (458)
+.|..++...|...........+........+.. +...-..+++.++....+..|.++...-..... ...++
T Consensus 90 ~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK 169 (301)
T 2efk_A 90 ENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEK 169 (301)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHhHHh
Q 012695 267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVE-RDIADAENARNEWESKTWDLDSKLG 345 (458)
Q Consensus 267 ~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~-~~i~~l~~~~~~l~~~~~~~e~~~~ 345 (458)
...+.......++....+....-......+.. +=..++-.+-...+.+. ..+..+...+..+..-....-..+.
T Consensus 170 ~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~-----~~~~~~p~~~~~lQ~lee~r~~~lk~~l~~~~~~~~~~~~~~~ 244 (301)
T 2efk_A 170 AKQQAHLRSHMAEESKNEYAAQLQRFNRDQAH-----FYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIA 244 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred hHHHHHHHHHHHHHH
Q 012695 346 RKFKELEALSMECNQ 360 (458)
Q Consensus 346 ~~~~~lE~~v~~yN~ 360 (458)
...+.+...+..++.
T Consensus 245 ~~~~~l~~~~~~id~ 259 (301)
T 2efk_A 245 KCLEGMKVAANAVDP 259 (301)
T ss_dssp HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhcCc
No 268
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.80 E-value=65 Score=30.23 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012695 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQP 457 (458)
Q Consensus 415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~~~ 457 (458)
....++.+++.+..+.+-+...+..+..++..++++++..-+|
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445666666666666666667777777777777777666665
No 269
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=31.79 E-value=2.3e+02 Score=23.79 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 307 RDVERMRRELQAVERDIADAENARNE 332 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~~ 332 (458)
.++-++..|...+++.+++....+..
T Consensus 60 KEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 60 KEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 35666677777777777766655543
No 270
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=31.49 E-value=2.5e+02 Score=24.21 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=14.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHhc
Q 012695 344 LGRKFKELEALSMECNQAMKRL 365 (458)
Q Consensus 344 ~~~~~~~lE~~v~~yN~~~~~l 365 (458)
.......+-.++..||..-...
T Consensus 128 ~~~L~~kf~~~m~~yq~~q~~y 149 (180)
T 1s94_A 128 YSTISRKFVEVMSDYNTTQIDY 149 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667788888775443
No 271
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=31.23 E-value=3.3e+02 Score=25.45 Aligned_cols=21 Identities=10% Similarity=0.507 Sum_probs=11.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHH
Q 012695 302 QTINARDVERMRRELQAVERD 322 (458)
Q Consensus 302 Q~~S~~di~rmn~E~~~L~~~ 322 (458)
..+++.+++++....+.+...
T Consensus 187 ~~~~~k~~eK~~~k~~k~~~~ 207 (312)
T 3abh_A 187 PSLNPEQLKKLQDKIEKCKQD 207 (312)
T ss_dssp TTCCSHHHHGGGTTTTSHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHH
Confidence 456667777655444444333
No 272
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=31.19 E-value=1.3e+02 Score=29.96 Aligned_cols=43 Identities=12% Similarity=0.298 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhccCCCC------hHHHHHHHHHHHHHHHHHHHHH
Q 012695 214 EYVEELKKKVSEMEGAMTGPT------EREKLEKEKCVLEEDLNKFNAI 256 (458)
Q Consensus 214 e~~~~L~~e~~eLe~l~~~~~------~l~~L~~~~~~L~~D~~Kf~~y 256 (458)
..+..+.+.+++|+...+.|+ ...++-++...|+.-+..|..|
T Consensus 17 ~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~ 65 (371)
T 1zbt_A 17 DQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREY 65 (371)
T ss_dssp HHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666444443 3334444445555444444444
No 273
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=31.10 E-value=4.3e+02 Score=26.77 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 012695 212 VSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLE 247 (458)
Q Consensus 212 ~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~ 247 (458)
....+..++.++.+++...-.++..+.|.++...|.
T Consensus 205 ~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~ 240 (517)
T 4ad8_A 205 RARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLS 240 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 344556667777777764334556677776666654
No 274
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.10 E-value=1.3e+02 Score=30.16 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L 295 (458)
+.....+..+++++...+.+.+.+..++.+|
T Consensus 27 ~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 27 EQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344434444444455555554
No 275
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=30.38 E-value=2.1e+02 Score=23.01 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 012695 264 KEKMEKLVE 272 (458)
Q Consensus 264 ~~~~e~~l~ 272 (458)
+..++..+.
T Consensus 31 k~eL~~~~~ 39 (107)
T 2no2_A 31 KKELEDSLE 39 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 276
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=30.09 E-value=1.9e+02 Score=22.41 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Q 012695 203 EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEK 241 (458)
Q Consensus 203 ~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~ 241 (458)
+++...++++.++...|++++.+++...+.+++...+.+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~ 42 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQK 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 367778888888888999999888874455555444443
No 277
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=29.61 E-value=95 Score=18.70 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=6.8
Q ss_pred HHHhHHHHHHHHHHHHH
Q 012695 208 EKENVSEYVEELKKKVS 224 (458)
Q Consensus 208 ~~~~~~e~~~~L~~e~~ 224 (458)
...++...+++|++.++
T Consensus 9 kcaalesklqalekkle 25 (31)
T 3ljm_A 9 KCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 278
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=29.47 E-value=2.4e+02 Score=27.22 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 283 EEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 283 ~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
.+++..+.+.++.+...+..-+|..+++....+++..+..++.++..+
T Consensus 88 a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~a~~~l 135 (369)
T 1vf7_A 88 ANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQARINL 135 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445566666777788898888888777776665555444433
No 279
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=29.47 E-value=31 Score=29.03 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 302 QTINARDVERMRRELQAVERDIADAEN 328 (458)
Q Consensus 302 Q~~S~~di~rmn~E~~~L~~~i~~l~~ 328 (458)
..+|.++......++..+.+.+.....
T Consensus 55 ~~ls~~~~~~~~~el~~~~~~~q~~~~ 81 (143)
T 1u2m_A 55 SMKAGSDRTKLEKDVMAQRQTFAQKAQ 81 (143)
T ss_dssp ---------------------------
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888877777777766666654433
No 280
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=29.45 E-value=1.7e+02 Score=28.80 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=56.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHccCCCC-------------CcchHhHHHHHH
Q 012695 53 DLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPS-------------TTKFEEDLFVVL 119 (458)
Q Consensus 53 Rpl~DK~~q~~~~~~I~~fL~~~~f~~s~k~l~~PT~KdF~~If~fL~~~iD~~~-------------~~k~EeEv~~~l 119 (458)
-||+|+.|..+|.... ...+| +|.+....+++.+..-+|.+| ..---+.+...|
T Consensus 279 g~l~d~~f~~~~l~~~----~~~~~---------~~~~~~~~ll~~~~~E~~~p~~y~~~~~~~~~~~~~p~~~~~~~~L 345 (378)
T 2dul_A 279 GPLKDEKIVSKMVKEA----ESLSL---------ARKKQALKLLKMIDQELDIPLFYDTHAIGRRLKIETKKVEEIISAL 345 (378)
T ss_dssp SCSBCHHHHHHHHHHH----HTSCC---------TTHHHHHHHHHHHHHSCCSSCCEEHHHHHHHHTCCBCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh----hhccc---------chHHHHHHHHHHHHHhcCCCcEEeHHHHHHHcCCCCCCHHHHHHHH
Confidence 4899999999999874 22222 356788899999998888442 122368899999
Q ss_pred HhcCCCC---ccccccccCCCCCCChHHHHHHH
Q 012695 120 KSLSCPF---KINKSTLRSPNSPHNWPAYLALI 149 (458)
Q Consensus 120 K~L~YP~---~IsKS~L~avG~pHsWP~~Lg~L 149 (458)
+.+||=- ..+...+.| .+ .|..++.++
T Consensus 346 ~~~Gy~~s~tH~~p~~ikT-dA--p~~~i~~i~ 375 (378)
T 2dul_A 346 REQGYEATRTHFSPTGIKT-SA--PYEVFIETI 375 (378)
T ss_dssp HHTTCCEEEETTEEEEEEE-SS--CHHHHHHHH
T ss_pred HHCCCEEEeeecCCCcEec-CC--CHHHHHHHH
Confidence 9999854 344445555 34 377766554
No 281
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.33 E-value=2.4e+02 Score=23.25 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKR 434 (458)
Q Consensus 394 ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~ 434 (458)
++..+..|+.++.....+.+.....|..++..+...+++.+
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444444444444444444444444443
No 282
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=29.30 E-value=2.9e+02 Score=24.17 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=6.6
Q ss_pred HHHHHhhHHHhHH
Q 012695 332 EWESKTWDLDSKL 344 (458)
Q Consensus 332 ~l~~~~~~~e~~~ 344 (458)
.+..+.|..|...
T Consensus 126 elHrqiwqaE~kr 138 (169)
T 3k29_A 126 RLHKEEWMKEALK 138 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444556655533
No 283
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=28.80 E-value=1.1e+02 Score=29.51 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWE 334 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~ 334 (458)
.++...+.+++..+.+.++.+.-.+..-+|..+++....+++..+..++.++.++..+.
T Consensus 98 ~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~ 156 (359)
T 3lnn_A 98 SDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLG 156 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455566666666677777777778888888888888777777776666655443
No 284
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=28.76 E-value=83 Score=20.31 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 418 SLQQQSSEMAAKIEGKRKRIDALQ 441 (458)
Q Consensus 418 ~l~~~l~~~~~~i~~k~~e~~~Le 441 (458)
.|++.+.++-....++.++|+.|+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444333333334443333
No 285
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=28.58 E-value=3e+02 Score=24.14 Aligned_cols=38 Identities=0% Similarity=0.129 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 012695 274 KEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER 311 (458)
Q Consensus 274 l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~r 311 (458)
++.++.+..-++-.+.........-+...|++..+|..
T Consensus 129 lERemnsLKPeL~qL~K~rD~yl~wL~~~Gv~q~~in~ 166 (170)
T 3l4q_C 129 IDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQKKINE 166 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 33344444445556666666667777888888877753
No 286
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.46 E-value=2.3e+02 Score=22.80 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 012695 271 VEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER 311 (458)
Q Consensus 271 l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~r 311 (458)
|+++++|+.+.+.+|-...+. |+..-+.=+-.++||..
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQK---LkdAe~~~E~DPDevNK 74 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQK---LKDAEKAVEVDPDDVNK 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHH
Confidence 344444444444444433332 33333333344555554
No 287
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=28.28 E-value=1.2e+02 Score=24.05 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 012695 291 ENEEFKKRV 299 (458)
Q Consensus 291 E~~~L~~~v 299 (458)
|+.+|+..+
T Consensus 76 EI~rLr~eL 84 (92)
T 3vp9_A 76 EIKHLKLGL 84 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 288
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=28.25 E-value=4e+02 Score=25.45 Aligned_cols=23 Identities=9% Similarity=0.501 Sum_probs=13.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Q 012695 303 TINARDVERMRRELQAVERDIAD 325 (458)
Q Consensus 303 ~~S~~di~rmn~E~~~L~~~i~~ 325 (458)
.++..+++++....+.+......
T Consensus 188 ~~~~k~~eK~~~k~~k~~~~~~~ 210 (350)
T 3aco_A 188 SLNPEQLKKLQDKIEKCKQDVLK 210 (350)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 45567777666655555544443
No 289
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.20 E-value=1.2e+02 Score=19.25 Aligned_cols=15 Identities=20% Similarity=-0.075 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 012695 285 HKRICEENEEFKKRV 299 (458)
Q Consensus 285 l~~l~~E~~~L~~~v 299 (458)
...++.|+.+|+..|
T Consensus 16 ~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 16 IYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 344555666665554
No 290
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=28.14 E-value=4e+02 Score=25.48 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 012695 174 SMYMYAS 180 (458)
Q Consensus 174 ~~~~y~~ 180 (458)
.|++|+.
T Consensus 40 ~fwdY~~ 46 (307)
T 2l7b_A 40 RFWDYLR 46 (307)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3455544
No 291
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=28.08 E-value=1.8e+02 Score=26.31 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 274 KEREIGKKVEEHKRICEENEEFKKRVK 300 (458)
Q Consensus 274 l~~el~~~~~el~~l~~E~~~L~~~v~ 300 (458)
|..+++.++.++..++.++.+|+..+.
T Consensus 120 Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 120 LHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666666655543
No 292
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.04 E-value=1.1e+02 Score=19.69 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012695 428 AKIEGKRKRIDALQFHINEVS 448 (458)
Q Consensus 428 ~~i~~k~~e~~~Le~~~~~l~ 448 (458)
.+++++-.+...|+.++..|.
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 333444444444444444443
No 293
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=27.46 E-value=1.5e+02 Score=22.74 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 274 KEREIGKKVEEHKRICEENEEFKK 297 (458)
Q Consensus 274 l~~el~~~~~el~~l~~E~~~L~~ 297 (458)
+..+++.+..++..++.++..|+.
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555533
No 294
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.18 E-value=80 Score=29.66 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012695 277 EIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 277 el~~~~~el~~l~~E~~~L 295 (458)
++.....++..++.|++.|
T Consensus 76 ~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333
No 295
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=26.89 E-value=5.2 Score=33.41 Aligned_cols=86 Identities=13% Similarity=0.100 Sum_probs=52.7
Q ss_pred HHHHHHHHhccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcc---CCCC------------C---cc--hHhHHHHHHHh
Q 012695 64 AIRAINAHLSSHSFHIA--FPLKQVPSVKDITDVIKFLISQL---DYPS------------T---TK--FEEDLFVVLKS 121 (458)
Q Consensus 64 ~~~~I~~fL~~~~f~~s--~k~l~~PT~KdF~~If~fL~~~i---D~~~------------~---~k--~EeEv~~~lK~ 121 (458)
.-++++.-|.+.|||.. .|.|+.-.. +.-.+.+||+.+. |+.+ + .+ ...+.+.-|..
T Consensus 7 ~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~e 85 (118)
T 4ae4_A 7 SERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKE 85 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHH
Confidence 46788899999999942 222211112 5668899999864 1222 1 00 11234777889
Q ss_pred cCCCCccccccccCCCCCCChHHHHHHHHHHHHH
Q 012695 122 LSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQI 155 (458)
Q Consensus 122 L~YP~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l 155 (458)
+||+-..-|-.|..-++ .+=-++.||+-.
T Consensus 86 MGF~~~~a~~AL~~~~n-----d~erAlewL~~~ 114 (118)
T 4ae4_A 86 MGFELKDIKEVLLLHNN-----DQDNALEDLMAR 114 (118)
T ss_dssp TTCCHHHHHHHHHHTTT-----CHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCC-----CHHHHHHHHHHh
Confidence 99988766666666444 255677887643
No 296
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=26.77 E-value=1.7e+02 Score=20.55 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 012695 414 EELISLQQQSSEMAAK 429 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~ 429 (458)
+|...|+.-|.++...
T Consensus 28 DEV~~Le~NLrEL~~e 43 (51)
T 1yzm_A 28 DEVRTLQENLRQLQDE 43 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 297
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=26.72 E-value=3.3e+02 Score=24.04 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 012695 251 NKFNAIIGELNMRKEKMEKLV--EEKEREIG 279 (458)
Q Consensus 251 ~Kf~~yi~~~~~k~~~~e~~l--~~l~~el~ 279 (458)
..|-.|++.+.....++...| ..+..++.
T Consensus 31 ~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~ 61 (191)
T 1nfn_A 31 GRFWDYLRWVQTLSEQVQEELLSSQVTQELR 61 (191)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 356777777777777776666 55555554
No 298
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.54 E-value=2.5e+02 Score=22.43 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 012695 280 KKVEEHKRICEENEEF 295 (458)
Q Consensus 280 ~~~~el~~l~~E~~~L 295 (458)
+.+.+++.+..||..|
T Consensus 69 eLe~everL~~ENq~L 84 (104)
T 3s9g_A 69 ELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 299
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=26.41 E-value=1.7e+02 Score=20.54 Aligned_cols=40 Identities=5% Similarity=0.038 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL 453 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~ 453 (458)
.+...|-.+++.+...+...+.++.+.+.+...-.++|++
T Consensus 11 s~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444555556666666666666666655555555555554
No 300
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.27 E-value=90 Score=22.17 Aligned_cols=20 Identities=5% Similarity=0.167 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012695 276 REIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L 295 (458)
.++++...+...++.++.+|
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 301
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=26.24 E-value=1.6e+02 Score=20.31 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 435 KRIDALQFHINEVSAKKF 452 (458)
Q Consensus 435 ~e~~~Le~~~~~l~~q~~ 452 (458)
+||++|+..+++|...++
T Consensus 27 dEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 27 DEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355556666555555543
No 302
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=26.14 E-value=1.6e+02 Score=23.75 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 397 ALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDAL 440 (458)
Q Consensus 397 ~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~L 440 (458)
.|..++.++..++....+|.=+|+..+....-.|.+++..|..|
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 46777777777777777777777766665555555555555444
No 303
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=26.12 E-value=3.5e+02 Score=24.15 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRK 264 (458)
Q Consensus 235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~ 264 (458)
.+......+..|+-.+..|.+|..-...-+
T Consensus 106 kiqkyfQ~IEtlK~ql~nf~e~RLiYDHYK 135 (294)
T 3caz_A 106 KIQKYRQEIEEIKKEYKETDKYRERYDHYK 135 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355666667777777777777655544433
No 304
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=26.10 E-value=1.5e+02 Score=24.06 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 397 ALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDAL 440 (458)
Q Consensus 397 ~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~L 440 (458)
.|..++.++..++....+|.=+|+..+....-.|.+++..|..|
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 47788888888887777777777766655555555555544443
No 305
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=25.55 E-value=82 Score=20.10 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 012695 284 EHKRICEENEEFKKRV 299 (458)
Q Consensus 284 el~~l~~E~~~L~~~v 299 (458)
+-..++.|..+|+..+
T Consensus 16 ~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 16 KGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHh
Confidence 3344555555655543
No 306
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=25.55 E-value=2e+02 Score=23.27 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 404 DVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 404 ~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
++.+...+..+.+..|+++-=.+...+....-+|..|..++..+
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34555566666677788877778888888888888888887766
No 307
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=25.53 E-value=1.7e+02 Score=21.85 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012695 414 EELISLQQQSSEMAAKIEG 432 (458)
Q Consensus 414 ~e~~~l~~~l~~~~~~i~~ 432 (458)
+|...|+.-|.++...+..
T Consensus 46 DEV~tLe~NLrEL~~ei~~ 64 (69)
T 1z0k_B 46 DEVRTLQENLRQLQDEYDQ 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544443
No 308
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=25.49 E-value=1.9e+02 Score=21.97 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 270 LVEEKEREIGKKVEEHKRICEENEEFK 296 (458)
Q Consensus 270 ~l~~l~~el~~~~~el~~l~~E~~~L~ 296 (458)
+...|+.|-.....++..+..|+..|+
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444443
No 309
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=25.49 E-value=1.4e+02 Score=21.78 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012695 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAV 319 (458)
Q Consensus 286 ~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L 319 (458)
..|+..+++|-..+...|++-.+|-+.-+|++.|
T Consensus 8 ~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~L 41 (62)
T 2bzb_A 8 NKIENKKKELIQLVARHGLDHDKVLLFSRDLDKL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3344455555555666677766665554444444
No 310
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=25.36 E-value=1.4e+02 Score=19.09 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012695 283 EEHKRICEENEEFKKRVK 300 (458)
Q Consensus 283 ~el~~l~~E~~~L~~~v~ 300 (458)
.+...++.|..+|++.+.
T Consensus 15 ~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 15 SKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhc
Confidence 334455556666665543
No 311
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=25.14 E-value=3.5e+02 Score=23.69 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=15.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695 303 TINARDVERMRRELQAVERDIADAENARNEWESKTWD 339 (458)
Q Consensus 303 ~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~ 339 (458)
+-|.++|+.+..+.+.+++++......+..+...+..
T Consensus 148 g~s~~~ve~ll~~h~~f~~~l~~~~~~v~~l~~~~~~ 184 (218)
T 3fb2_A 148 GDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQ 184 (218)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4477788888888888888887777666666554433
No 312
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=25.11 E-value=1.3e+02 Score=19.09 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 012695 285 HKRICEENEEFKKRVK 300 (458)
Q Consensus 285 l~~l~~E~~~L~~~v~ 300 (458)
-..++.|..+|+..|.
T Consensus 17 ~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 17 NYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3445556666665543
No 313
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.03 E-value=1.6e+02 Score=22.01 Aligned_cols=32 Identities=9% Similarity=0.269 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEVSA 449 (458)
Q Consensus 418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~ 449 (458)
.++-.|..++..+...+..+.++|.++.+|+.
T Consensus 12 ~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 12 AIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 45566667777778888888888888888875
No 314
>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein; HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A 3muw_U 1z8y_A 1z8y_B
Probab=25.02 E-value=17 Score=38.66 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=3.1
Q ss_pred ccccCCCCCCChHH
Q 012695 131 STLRSPNSPHNWPA 144 (458)
Q Consensus 131 S~L~avG~pHsWP~ 144 (458)
+|+.|+|.||.|||
T Consensus 340 aQ~sa~G~pHG~PH 353 (750)
T 3muu_A 340 AQESAGGGSWSHPQ 353 (750)
T ss_dssp CSCC----------
T ss_pred eeccCCCCCCcCcc
Confidence 67889999999999
No 315
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=24.99 E-value=1.4e+02 Score=19.21 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012695 427 AAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 427 ~~~i~~k~~e~~~Le~~~~~l 447 (458)
-..|+.|.++|+.|..+..+|
T Consensus 13 hk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 13 HKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 345566666666666665554
No 316
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=24.95 E-value=19 Score=34.51 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=19.5
Q ss_pred CCCCCC---HHHHHHHHHHHHHHhccCC
Q 012695 52 ADLYTD---RSHQSSAIRAINAHLSSHS 76 (458)
Q Consensus 52 pRpl~D---K~~q~~~~~~I~~fL~~~~ 76 (458)
-|||+| .+|.+=....|+++|.+++
T Consensus 177 EkPLSdLG~~sYr~YW~~~i~~~L~~~~ 204 (280)
T 2ou2_A 177 EKPLSDLGLLSYRSYWSQTILEILMGLK 204 (280)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 699999 6799999999999998754
No 317
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=24.69 E-value=1.9e+02 Score=20.82 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 012695 436 RIDALQFHINEVSAKK 451 (458)
Q Consensus 436 e~~~Le~~~~~l~~q~ 451 (458)
||+.|+..+++|...+
T Consensus 36 EV~~Le~NLrEL~~ei 51 (59)
T 1z0j_B 36 EVEVLTENLRELKHTL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 318
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=24.52 E-value=2.2e+02 Score=24.61 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 304 INARDVERMRRELQAVERDIADAENARNEWES 335 (458)
Q Consensus 304 ~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~ 335 (458)
=|+.|++++..|+..+...|.+-...+.+|..
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~ 33 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQLQELIL 33 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999999888888866666655543
No 319
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=23.98 E-value=4.1e+02 Score=24.09 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 012695 277 EIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVE 320 (458)
Q Consensus 277 el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~ 320 (458)
+++...........+.++++. .+.|+.+++++........
T Consensus 137 ~l~Kak~~Y~~~c~e~e~~~~----~~~s~k~~eK~~~k~~ka~ 176 (276)
T 2v0o_A 137 ALQKSKENYNAKCVEQERLKK----EGATQREIEKAAVKSKKAT 176 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHH
Confidence 333444444444444444443 2688888877765554433
No 320
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=23.97 E-value=2.1e+02 Score=24.17 Aligned_cols=46 Identities=9% Similarity=0.206 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHH
Q 012695 318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK 363 (458)
Q Consensus 318 ~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~ 363 (458)
+|+.-...+-..+..++..-|++|..+.+.--+|..+-...|.+-.
T Consensus 62 ~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 4555566666777788888999999998888888888888777743
No 321
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.93 E-value=3.2e+02 Score=22.81 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred hchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695 392 STLKPALESFAD---DVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454 (458)
Q Consensus 392 ~~ik~~L~~l~~---~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~ 454 (458)
..|+..|..... .+........+....+++++..+...+......++..+......++.+..|
T Consensus 63 ~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 63 EALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 322
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.84 E-value=7.9 Score=29.40 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=38.8
Q ss_pred HHHHHccC-CC----C---CcchHhHHHHHHHhcCCCCccccccccCCCCCCChHHHHHHHHHHHH
Q 012695 97 KFLISQLD-YP----S---TTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQ 154 (458)
Q Consensus 97 ~fL~~~iD-~~----~---~~k~EeEv~~~lK~L~YP~~IsKS~L~avG~pHsWP~~Lg~L~WLv~ 154 (458)
+||+...| |. + ...+.++.+.-|..+|||-...+..|.+.|+ .+=.|+.||..
T Consensus 6 ~wl~~h~dDpd~d~pl~~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-----nve~Ave~L~~ 66 (73)
T 1wiv_A 6 SGLLSHMDDPDIDAPISHQTSDIDQSSVDTLLSFGFAEDVARKALKASGG-----DIEKATDWVFN 66 (73)
T ss_dssp CCCSSCCSCSCSSCCSCCSSCSSCHHHHHHHHHHTCCHHHHHHHHHHTTS-----CHHHHHHHHHH
T ss_pred HHHHHcCCCCCccCCCCCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-----CHHHHHHHHHh
Confidence 46666665 32 2 2457788899999999999888888888653 56678889864
No 323
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.77 E-value=2.5e+02 Score=21.64 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 275 EREIGKKVEEHKRICEENEEFKKR 298 (458)
Q Consensus 275 ~~el~~~~~el~~l~~E~~~L~~~ 298 (458)
..+++.++.++..++.++.+|+..
T Consensus 52 h~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 52 HKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555444
No 324
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.58 E-value=2.5e+02 Score=21.42 Aligned_cols=20 Identities=0% Similarity=0.049 Sum_probs=13.9
Q ss_pred HHHHhhcCCHHHHHHHHHHH
Q 012695 297 KRVKLQTINARDVERMRREL 316 (458)
Q Consensus 297 ~~v~~Q~~S~~di~rmn~E~ 316 (458)
..+..-|||.++|..+-.-.
T Consensus 10 ~~lr~lGfsL~eIk~~l~~~ 29 (99)
T 1q08_A 10 RHARQLGFSLESIRELLSIR 29 (99)
T ss_dssp HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHH
Confidence 34455689999998876543
No 325
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=23.57 E-value=2.3e+02 Score=23.83 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 396 PALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHI 444 (458)
Q Consensus 396 ~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~ 444 (458)
..|..++.++..++....+|.=+++..+....-.|.+++..|..|..++
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKf 109 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHccc
Confidence 3588889999888888888888888888877777888877777775443
No 326
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.91 E-value=1.4e+02 Score=22.11 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 424 SEMAAKIEGKRKRIDALQFHINEV 447 (458)
Q Consensus 424 ~~~~~~i~~k~~e~~~Le~~~~~l 447 (458)
..++..+.++..++..|..+++++
T Consensus 28 ~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 28 KELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555443
No 327
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=22.88 E-value=2.6e+02 Score=21.54 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=11.0
Q ss_pred HhhcCCHHHHHHHHHHHHHHHH
Q 012695 300 KLQTINARDVERMRRELQAVER 321 (458)
Q Consensus 300 ~~Q~~S~~di~rmn~E~~~L~~ 321 (458)
..-..++++...+....+.|..
T Consensus 71 ~~~~~~~~~~~~i~~~l~~l~~ 92 (118)
T 3uul_A 71 TQGTLSDEEEFEIQEQMTLLNA 92 (118)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHH
T ss_pred HhCCCChhHHHHHHHHHHHHHH
Confidence 3345666666555444444433
No 328
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.78 E-value=2e+02 Score=20.15 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 413 LEELISLQQQSSEMAAKIEGKRKRIDAL 440 (458)
Q Consensus 413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~L 440 (458)
...+..|+.++..+......++.+++.|
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444444444444333
No 329
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=22.71 E-value=2.3e+02 Score=20.69 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 012695 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVER 321 (458)
Q Consensus 286 ~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~ 321 (458)
..|+..+++|-..+...|++-.+|-+.-+|++.|-.
T Consensus 8 ~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn 43 (64)
T 2c0s_A 8 DRIEAKKKELIYLVEKYGFTHHKVISFSQELDRLLN 43 (64)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 344555566666667778887777666555555533
No 330
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=22.69 E-value=3.5e+02 Score=22.83 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695 307 RDVERMRRELQAVERDIADAENARNEWESKT 337 (458)
Q Consensus 307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~ 337 (458)
..|..+....+.++.+|......+..+...+
T Consensus 88 ~~v~~ll~kH~afe~El~a~~~~~~~l~~~g 118 (161)
T 3lbx_A 88 TNIQGKYQKHQSLEAEVQTKSRLMSELEKTR 118 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666665555555444443
No 331
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=22.49 E-value=6.1e+02 Score=25.57 Aligned_cols=23 Identities=9% Similarity=0.491 Sum_probs=13.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHH
Q 012695 302 QTINARDVERMRRELQAVERDIA 324 (458)
Q Consensus 302 Q~~S~~di~rmn~E~~~L~~~i~ 324 (458)
.+++..+++++....++....+.
T Consensus 180 ~~~t~k~~eK~~~k~~k~~~~~~ 202 (486)
T 3haj_A 180 PSLNPEQLKKLQDKIEKCKQDVL 202 (486)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH
Confidence 45666777777666655554443
No 332
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=22.39 E-value=63 Score=24.61 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=17.5
Q ss_pred CC-CCCCCHHHHHHHHHHHHHHhccCCCCCC
Q 012695 51 AA-DLYTDRSHQSSAIRAINAHLSSHSFHIA 80 (458)
Q Consensus 51 Dp-Rpl~DK~~q~~~~~~I~~fL~~~~f~~s 80 (458)
|+ .||+| ++|.+-|.+.|+.++
T Consensus 33 d~~kPlSD--------~~I~~~L~~~Gi~Ia 55 (76)
T 2ahq_A 33 DKRKPYSD--------QEIANILKEKGFKVA 55 (76)
T ss_dssp CSSSCCCH--------HHHHHHHTTTSSCCC
T ss_pred CCCCCCCH--------HHHHHHHHHcCCCcc
Confidence 55 59999 568888888888765
No 333
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.21 E-value=2.1e+02 Score=24.11 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEVS 448 (458)
Q Consensus 418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~ 448 (458)
-|+++++.+.+.|.+.+..++.|+..++.++
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 334
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.10 E-value=1.9e+02 Score=28.79 Aligned_cols=22 Identities=5% Similarity=0.070 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHhccCCC
Q 012695 56 TDRSHQSSAIRAINAHLSSHSF 77 (458)
Q Consensus 56 ~DK~~q~~~~~~I~~fL~~~~f 77 (458)
.|......+.+.|.+|+..++.
T Consensus 81 ~~~~~~~~~~~~l~~~~k~~~~ 102 (426)
T 1lrz_A 81 ENQELVHFFFNELSKYVKKHRC 102 (426)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTE
T ss_pred CCHHHHHHHHHHHHHHHHHcCE
Confidence 5778888999999999998875
No 335
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.92 E-value=2.9e+02 Score=21.60 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 012695 305 NARDVERMRRELQAVERDIAD-AENARN 331 (458)
Q Consensus 305 S~~di~rmn~E~~~L~~~i~~-l~~~~~ 331 (458)
.+.....|+.....-+.+++. ++..+.
T Consensus 63 p~~~R~~~~~klr~Yk~dl~~~lk~~lk 90 (97)
T 3onj_A 63 DASERATYKAKLREWKKTIQSDIKRPLQ 90 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555554 444443
No 336
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=21.66 E-value=2.2e+02 Score=20.75 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhHHHhHHhhHHHHHHHHHHHHHHHHHh
Q 012695 318 AVERDIADAENARNEWESK-TWDLDSKLGRKFKELEALSMECNQAMKR 364 (458)
Q Consensus 318 ~L~~~i~~l~~~~~~l~~~-~~~~e~~~~~~~~~lE~~v~~yN~~~~~ 364 (458)
.|...|+..+.++-.+-.+ ++. .-.+-+.-.+|..++..|+....+
T Consensus 5 ~L~~~IE~kR~eL~~l~~k~Gl~-~~~vI~~SQeLD~LIn~Y~k~~~~ 51 (64)
T 2c0s_A 5 KLNDRIEAKKKELIYLVEKYGFT-HHKVISFSQELDRLLNLLIELKTK 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455444444444322 111 223344556788889999987654
No 337
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=21.30 E-value=3e+02 Score=21.56 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 291 ENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (458)
Q Consensus 291 E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~ 330 (458)
-+++++..++..++|.+++..|...|.+.++.+..-.=+.
T Consensus 40 pv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRk 79 (92)
T 1skn_P 40 SLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQ 79 (92)
T ss_dssp CHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4567888889999999999999999999988887544333
No 338
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.99 E-value=6.8e+02 Score=25.58 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 271 VEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336 (458)
Q Consensus 271 l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~ 336 (458)
+...+.++...+..+..++..+..+...... --.....+..|...+++.+..++.+..+-+.+
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~---A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK 420 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKH---ANDALNALLKEKENIRNQLSGINQKIAEEKRK 420 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Confidence 4444444444444444444333333222111 11122233345555555555555554444443
No 339
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.97 E-value=2.4e+02 Score=21.92 Aligned_cols=20 Identities=5% Similarity=0.023 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012695 276 REIGKKVEEHKRICEENEEF 295 (458)
Q Consensus 276 ~el~~~~~el~~l~~E~~~L 295 (458)
.+|......++.+..++.+|
T Consensus 63 ~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 63 LLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444
No 340
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=20.68 E-value=2.4e+02 Score=22.72 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012695 403 DDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQP 457 (458)
Q Consensus 403 ~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~~~ 457 (458)
+++.....+..+.+..|+.+-=.+...+....-+|..|..++..+ ..|.-|
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl----gKf~Kp 95 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN----QKVSKT 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh----cCccCC
Confidence 455667777777788888888888888888888999999888877 345544
No 341
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.66 E-value=1.7e+02 Score=18.49 Aligned_cols=15 Identities=7% Similarity=-0.099 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 012695 285 HKRICEENEEFKKRV 299 (458)
Q Consensus 285 l~~l~~E~~~L~~~v 299 (458)
-..++.|..+|+..+
T Consensus 16 ~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 16 XYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 344555555555544
No 342
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=20.62 E-value=2.5e+02 Score=28.35 Aligned_cols=61 Identities=8% Similarity=0.057 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhcC
Q 012695 396 PALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKR-----KRIDALQFHINEVSAKKFLFLQ 456 (458)
Q Consensus 396 ~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~-----~e~~~Le~~~~~l~~q~~~~~~ 456 (458)
..|..++.++...+...-++...+=++|..+..+|...+ ..-..|..+.+.+..+|.+++.
T Consensus 85 ~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~~v~ 150 (463)
T 2d4y_A 85 QYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVG 150 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHHhhcC
Confidence 346666666666666666677777777777777775442 2344688888888888887753
No 343
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.46 E-value=6.9e+02 Score=25.43 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012695 286 KRICEENEEFKKRVKLQ 302 (458)
Q Consensus 286 ~~l~~E~~~L~~~v~~Q 302 (458)
++|+..+..|+..|+.|
T Consensus 114 ~eLe~ri~yIK~kVd~q 130 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQ 130 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566666666655
No 344
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=20.36 E-value=3.6e+02 Score=22.09 Aligned_cols=52 Identities=6% Similarity=0.097 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (458)
Q Consensus 248 ~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v 299 (458)
.++..|..|+..+...+......+...+.+++.....+.....+.+.+..-.
T Consensus 67 ~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~ 118 (150)
T 3ajw_A 67 NRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQ 118 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999888888888888888888877777777665443
No 345
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=20.24 E-value=5e+02 Score=23.71 Aligned_cols=24 Identities=17% Similarity=0.154 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695 312 MRRELQAVERDIADAENARNEWES 335 (458)
Q Consensus 312 mn~E~~~L~~~i~~l~~~~~~l~~ 335 (458)
+...+..++..|..+.....+|.+
T Consensus 170 ie~dL~~~e~~i~~l~~~a~~L~~ 193 (235)
T 2odv_A 170 VERDLDKADSMIRLLFNDVQTLKD 193 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555555555544
No 346
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=20.23 E-value=3.2e+02 Score=21.48 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695 282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323 (458)
Q Consensus 282 ~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i 323 (458)
+.=...+-.|+.+--.+|.+-+++-..|..+|-|+..|-+.-
T Consensus 27 ekWR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK 68 (92)
T 1x4t_A 27 EKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREK 68 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 333455566777777888889999888888888877775543
No 347
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.19 E-value=5.2e+02 Score=24.47 Aligned_cols=22 Identities=5% Similarity=-0.168 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 012695 282 VEEHKRICEENEEFKKRVKLQT 303 (458)
Q Consensus 282 ~~el~~l~~E~~~L~~~v~~Q~ 303 (458)
+.++..++.+....+..++...
T Consensus 76 ~a~l~~~~a~l~~a~~~~~~a~ 97 (369)
T 4dk0_A 76 KAALASYQAQLVARKTAYDVAL 97 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 348
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.00 E-value=3.7e+02 Score=22.46 Aligned_cols=59 Identities=5% Similarity=0.064 Sum_probs=29.1
Q ss_pred HhhcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHH
Q 012695 300 KLQTINARDVERMRRELQ----AVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAM 362 (458)
Q Consensus 300 ~~Q~~S~~di~rmn~E~~----~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~ 362 (458)
...|+|.++|.++-.-.. ......+-+..++.++++++.+++ +..+.|+..+..|....
T Consensus 70 r~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~----~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 70 KNTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTE----KNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp HTTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHC----
T ss_pred HHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 456888888877765321 122233344445555544444433 35555666666665543
Done!