BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012697
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 622 bits (1603), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/426 (70%), Positives = 354/426 (83%), Gaps = 6/426 (1%)
Query: 32 RIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYF 91
RI LKKR D N+RVA L E + + L + DIVALKNYM+AQYF
Sbjct: 2 RIALKKRPIDRNSRVATGLSGGEEQPLLSGANP------LRSEEEGDIVALKNYMNAQYF 55
Query: 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIH 151
GEIG+GTPPQ FTVIFDTGSSNLWVPS+KCYFSIACY HS+Y++G SSTYKKNGK A I
Sbjct: 56 GEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQ 115
Query: 152 YGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAV 211
YGTG+I+G+FSED V +GDLVVKDQEFIEAT+EP +TFL+AKFDGILGLGF+EISVGKAV
Sbjct: 116 YGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAV 175
Query: 212 PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQF 271
PVWY M+ QGLV++PVFSFW NR+ DE EGGEI+FGGMDP HY GEHTYVPVTQKGYWQF
Sbjct: 176 PVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQF 235
Query: 272 DMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQ 331
DMGDV++ G++TGFCAGGCAAIADSGTSLLAGPT IIT++N IGA G+VSQECK +VSQ
Sbjct: 236 DMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQ 295
Query: 332 YGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTC 391
YG++I+++LLA+ +P+KICSQ+GLCTFDG+RGVS GI SVV + +++G D MCS C
Sbjct: 296 YGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSAC 355
Query: 392 EMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIF 451
EMAVVWMQNQL QN+TQ+ IL+YVN+LC+RLPSPMGESAVDC L S+P + FTIGGK F
Sbjct: 356 EMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKF 415
Query: 452 DLTPDQ 457
L P++
Sbjct: 416 ALKPEE 421
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 166/239 (69%), Positives = 188/239 (78%), Gaps = 4/239 (1%)
Query: 79 IVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRS 138
+VAL N D YFGEIGIGTPPQ FTVIFDTGSS LWVPSSKC S AC HS Y S S
Sbjct: 4 VVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDS 63
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGIL 198
STYK+NG I YGTG+I+GFFS+D V IGDLVVK+Q+FIEAT E FL FDGIL
Sbjct: 64 STYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGIL 123
Query: 199 GLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEH 258
GL FQ ISV PVWYNM+NQGLV E FSFW NRN DEEEGGE+VFGG+DP+H++G+H
Sbjct: 124 GLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDH 179
Query: 259 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 317
TYVPVT + YWQF +GDV+I ++TGFCA GC A ADSGTSLL+GPT I+TQ+NHAIGA
Sbjct: 180 TYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGA 238
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 241 bits (616), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 183/289 (63%), Gaps = 20/289 (6%)
Query: 32 RIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYF 91
R LK+R D+ ARL G + +++ +L GN S V L NYMD QY+
Sbjct: 20 RESLKERGVDM-----ARL----GPEWSQPMKRLTL-GNTTSS-----VILTNYMDTQYY 64
Query: 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRSSTYKKNGKSADI 150
GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + SS+YK NG +
Sbjct: 65 GEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTL 124
Query: 151 HYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKA 210
Y TG +SGF S+D + +G + V Q F E T P+L F+LA+FDG++G+GF E ++G+
Sbjct: 125 RYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRV 183
Query: 211 VPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKGEHTYVPVTQKGY 268
P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G Y+ + + G
Sbjct: 184 TPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGV 243
Query: 269 WQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 317
WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 244 WQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 291
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/263 (46%), Positives = 168/263 (63%), Gaps = 10/263 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L NY+D +YFG I IG+PPQNFTVIFDTGSSNLWVPS C S AC HS+++ +SSTY
Sbjct: 17 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT-SPACKTHSRFQPSQSSTY 75
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ G+S I YGTG++SG D V + L V Q+F E+ EP TF+ A+FDGILGLG
Sbjct: 76 SQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLG 135
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ ++VG PV+ NM+ Q LV+ P+FS + + N + G E++FGG D H+ G +V
Sbjct: 136 YPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWV 195
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIV 321
PVT++ YWQ + ++ + G T FC+ GC AI D+GTSL+ GP+ I Q+ +AIGA
Sbjct: 196 PVTKQAYWQIALDNIQVGG-TVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGA---- 250
Query: 322 SQECKAVVSQYGEEIINMLLAKD 344
V +Y E N+ + D
Sbjct: 251 ----APVDGEYAVECANLNVMPD 269
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE AV+C+ L+ +P V+FTI G + L+P
Sbjct: 255 GEYAVECANLNVMPDVTFTINGVPYTLSP 283
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 163/241 (67%), Gaps = 5/241 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGIL 198
S+YK NG + Y TG +SGF S+D + +G + V Q F E T P+L F+LA+FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 199 GLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKG 256
G+GF E ++G+ P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 188
Query: 257 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+G
Sbjct: 189 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 247
Query: 317 A 317
A
Sbjct: 248 A 248
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 163/241 (67%), Gaps = 5/241 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGIL 198
S+YK NG + Y TG +SGF S+D + +G + V Q F E T P+L F+LA+FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 199 GLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKG 256
G+GF E ++G+ P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 188
Query: 257 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+G
Sbjct: 189 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 247
Query: 317 A 317
A
Sbjct: 248 A 248
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 163/241 (67%), Gaps = 5/241 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 6 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 65
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGIL 198
S+YK NG + Y TG +SGF S+D + +G + V Q F E T P+L F+LA+FDG++
Sbjct: 66 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 124
Query: 199 GLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKG 256
G+GF E ++G+ P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G
Sbjct: 125 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 184
Query: 257 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+G
Sbjct: 185 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 243
Query: 317 A 317
A
Sbjct: 244 A 244
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 163/241 (67%), Gaps = 5/241 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 7 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 66
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGIL 198
S+YK NG + Y TG +SGF S+D + +G + V Q F E T P+L F+LA+FDG++
Sbjct: 67 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 125
Query: 199 GLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKG 256
G+GF E ++G+ P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G
Sbjct: 126 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 185
Query: 257 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+G
Sbjct: 186 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 244
Query: 317 A 317
A
Sbjct: 245 A 245
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 238 bits (608), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 163/241 (67%), Gaps = 5/241 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 3 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 62
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGIL 198
S+YK NG + Y TG +SGF S+D + +G + V Q F E T P+L F+LA+FDG++
Sbjct: 63 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 121
Query: 199 GLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE--GGEIVFGGMDPDHYKG 256
G+GF E ++G+ P++ N+++QG++ E VFSF++NR+++ + GG+IV GG DP HY+G
Sbjct: 122 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 181
Query: 257 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+G
Sbjct: 182 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 240
Query: 317 A 317
A
Sbjct: 241 A 241
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 161/239 (67%), Gaps = 6/239 (2%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGIL 198
S+YK NG + Y TG +SGF S+D + +G + V Q F E T P+L F+LA+FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 199 GLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEH 258
G+GF E ++G+ P++ N+++QG++ E VFSF++NR++ GG+IV GG DP HY+G
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDS---LGGQIVLGGSDPQHYEGNF 185
Query: 259 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 317
Y+ + + G WQ M V + G +T C GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 186 HYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 243
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 231 bits (588), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 118/252 (46%), Positives = 162/252 (64%), Gaps = 8/252 (3%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSS 139
V L NY++AQY+ +I +GTPPQNF VI DTGSSNLWVPS++C S+AC+ HSKY SS
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 140 TYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILG 199
+YK NG I YGTG++ G+ S+D + IGDL + Q+F EAT EP LTF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 200 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWF-NRNADEEEGGEIVFGGMDPDHYKGEH 258
LG+ ISV K VP +YN + Q L++E F+F+ + + D E GGE FGG+D +KG+
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 259 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA- 317
T++PV +K YW+ + + + + G A D+GTSL+ P+ + +N IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241
Query: 318 ---TGIVSQECK 326
TG + +C
Sbjct: 242 KGSTGQYTLDCN 253
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/252 (46%), Positives = 162/252 (64%), Gaps = 8/252 (3%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSS 139
V L NY++AQY+ +I +GTPPQNF VI DTGSSNLWVPS++C S+AC+ HSKY SS
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 140 TYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILG 199
+YK NG I YGTG++ G+ S+D + IGDL + Q+F EAT EP LTF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 200 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWF-NRNADEEEGGEIVFGGMDPDHYKGEH 258
LG+ ISV K VP +YN + Q L++E F+F+ + + D E GGE FGG+D +KG+
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 259 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA- 317
T++PV +K YW+ + + + + G A D+GTSL+ P+ + +N IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241
Query: 318 ---TGIVSQECK 326
TG + +C
Sbjct: 242 KGWTGQYTLDCN 253
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/252 (46%), Positives = 162/252 (64%), Gaps = 8/252 (3%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSS 139
V L NY++AQY+ +I +GTPPQNF VI DTGSSNLWVPS++C S+AC+ HSKY SS
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 140 TYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILG 199
+YK NG I YGTG++ G+ S+D + IGDL + Q+F EAT EP LTF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 200 LGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWF-NRNADEEEGGEIVFGGMDPDHYKGEH 258
LG+ ISV K VP +YN + Q L++E F+F+ + + D E GGE FGG+D +KG+
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 259 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA- 317
T++PV +K YW+ + + + + G A D+GTSL+ P+ + +N IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241
Query: 318 ---TGIVSQECK 326
TG + +C
Sbjct: 242 KGWTGQYTLDCN 253
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 159/239 (66%), Gaps = 4/239 (1%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NY+++QY+GEIGIGTPPQ F VIFDTGS+NLWVPS+KC +AC HS Y S S
Sbjct: 7 VVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDS 66
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGIL 198
S+Y +NG IHYG+G + GF S+D V +G + V Q F E T+ P + F+LA+FDG+L
Sbjct: 67 SSYMENGDDFTIHYGSGRVKGFLSQDSVTVGGITVT-QTFGEVTQLPLIPFMLAQFDGVL 125
Query: 199 GLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEH 258
G+GF +VG PV+ ++++QG++ E VFS ++NR GGE+V GG DP HY+G+
Sbjct: 126 GMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGP-HLLGGEVVLGGSDPQHYQGDF 184
Query: 259 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 317
YV +++ WQ M V + G +T C GC + D+G+S ++ PT+ + + A+GA
Sbjct: 185 HYVSLSKTDSWQITMKGVSV-GSSTLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALGA 242
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 426 MGESAVDCSRLSSLPIVSFTIGGKIFDLT 454
+ E V CS++ +LP +SF +GG+ + L+
Sbjct: 247 LHEYVVSCSQVPTLPDISFNLGGRAYTLS 275
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 221 bits (563), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 158/254 (62%), Gaps = 12/254 (4%)
Query: 85 YMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKN 144
YMDA YFGEI IGTPPQNF V+FDTGSSNLWVPS C S AC HS++ SSTY N
Sbjct: 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTN 67
Query: 145 GKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQE 204
G++ + YG+G+++GFF D + + + V +QEF + EP F+ A+FDGI+GL +
Sbjct: 68 GQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPA 127
Query: 205 ISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVT 264
+SV +A MV +G + PVFS + + N GG +VFGG+D Y G+ + PVT
Sbjct: 128 LSVDEATTAMQGMVQEGALTSPVFSVYLS-NQQGSSGGAVVFGGVDSSLYTGQIYWAPVT 186
Query: 265 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQE 324
Q+ YWQ + + +I GQ +G+C+ GC AI D+GTSLL P ++ + A GA QE
Sbjct: 187 QELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGA-----QE 241
Query: 325 CKAVVSQYGEEIIN 338
+YG+ ++N
Sbjct: 242 -----DEYGQFLVN 250
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 160/253 (63%), Gaps = 8/253 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTV+FDTGSSNLWVPS C S+AC H+++ SSTY
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ ++ I YGTG+++G D V++G + +Q F + EP A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ IS A PV+ N+ NQGLV++ +FS + +AD++ G ++FGG+D +Y G +V
Sbjct: 125 YPSISSSGATPVFDNIWNQGLVSQDLFSVYL--SADDQSGSVVIFGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT--- 318
PVT +GYWQ + + ++G+ CA GC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENS 241
Query: 319 -GIVSQECKAVVS 330
G + C A+ S
Sbjct: 242 DGDMVVSCSAISS 254
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
G+ V CS +SSLP + FTI G + + P
Sbjct: 243 GDMVVSCSAISSLPDIVFTINGVQYPVPP 271
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 160/253 (63%), Gaps = 8/253 (3%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTV+FDTGSSNLWVPS C S+AC H+++ SSTY
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ ++ I YGTG+++G D V++G + +Q F + EP A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ IS A PV+ N+ NQGLV++ +FS + +AD++ G ++FGG+D +Y G +V
Sbjct: 125 YPSISSSGATPVFDNIWNQGLVSQDLFSVYL--SADDQSGSVVIFGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT--- 318
PVT +GYWQ + + ++G+ CA GC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENS 241
Query: 319 -GIVSQECKAVVS 330
G + C A+ S
Sbjct: 242 DGDMVVSCSAISS 254
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
G+ V CS +SSLP + FTI G + + P
Sbjct: 243 GDMVVSCSAISSLPDIVFTINGVQYPVPP 271
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 108
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ + I YGTG+++G D V++G + +Q F + EP A FDGILGL
Sbjct: 109 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 168
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ IS A PV+ N+ +QGLV++ +FS + + N D G ++ GG+D +Y G +V
Sbjct: 169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWV 226
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 227 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 282
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE + CS + SLP + FTI G + L+P
Sbjct: 287 GEMVISCSSIDSLPDIVFTIDGVQYPLSP 315
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ + I YGTG+++G D V++G + +Q F + EP A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ IS A PV+ N+ +QGLV++ +FS + + N D G ++ GG+D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE + CS ++SLP + FTI G + L+P
Sbjct: 243 GEMVISCSSIASLPDIVFTINGVQYPLSP 271
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ + I YGTG+++G D V++G + +Q F + EP A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ IS A PV+ N+ +QGLV++ +FS + + N ++ G ++ GG+D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE + CS + SLP + FTI G + L+P
Sbjct: 243 GEMVISCSSIDSLPDIVFTIDGVQYPLSP 271
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ + I YGTG+++G D V++G + +Q F + EP A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ IS A PV+ N+ +QGLV++ +FS + + N ++ G ++ GG+D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE + CS + SLP + FTI G + L+P
Sbjct: 243 GEMVISCSSIDSLPDIVFTINGVQYPLSP 271
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 108
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ + I YGTG+++G D V++G + +Q F + EP A FDGILGL
Sbjct: 109 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 168
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ IS A PV+ N+ +QGLV++ +FS + + N D G ++ GG+D +Y G +V
Sbjct: 169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWV 226
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 227 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 282
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE + CS + SLP + FTI G + L+P
Sbjct: 287 GEMVISCSSIDSLPDIVFTIDGVQYPLSP 315
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 214 bits (546), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ + I YGTG+++G D V++G + +Q F + EP A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ IS A PV+ N+ +QGLV++ +FS + + N ++ G ++ GG+D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE + CS + SLP + FTI G + L+P
Sbjct: 243 GEMVISCSSIDSLPDIVFTIDGVQYPLSP 271
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 214 bits (546), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS C S+AC H+++ SST+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ + I YGTG+++G D V++G + +Q F + EP A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ IS A PV+ N+ +QGLV++ +FS + + N D G ++ GG+D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
PV+ +GYWQ + + +DG+T C+GGC AI D+GTSLL GPT+ I + IGA+
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE + CS + SLP + FTI G + L+P
Sbjct: 243 GEMVISCSSIDSLPDIVFTINGVQYPLSP 271
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 151/244 (61%), Gaps = 5/244 (2%)
Query: 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR 134
G+ V L NY+D+QYFG+I +GTPPQ FTV+FDTGSS+ WVPS C S AC H ++
Sbjct: 1 GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFD 59
Query: 135 SGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKF 194
+SST++ GK IHYGTG++ G D V + ++V Q +T+EP F A+F
Sbjct: 60 PRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEF 119
Query: 195 DGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY 254
DGILG+ + ++ ++PV+ NM+N+ LV + +FS + +RN E + G +DP +Y
Sbjct: 120 DGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQES---MLTLGAIDPSYY 176
Query: 255 KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHA 314
G +VPVT + YWQF + V I G C GGC AI D+GTS L GP++ I + A
Sbjct: 177 TGSLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQA 235
Query: 315 IGAT 318
IGAT
Sbjct: 236 IGAT 239
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE +DC LS +P V F I GK++ LTP
Sbjct: 244 GEFDIDCDNLSYMPTVVFEINGKMYPLTP 272
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 151/244 (61%), Gaps = 5/244 (2%)
Query: 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR 134
G+ V L NY+D+QYFG+I +GTPPQ FTV+FDTGSS+ WVPS C S AC H ++
Sbjct: 1 GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFD 59
Query: 135 SGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKF 194
+SST++ GK IHYGTG++ G D V + ++V Q +T+EP F A+F
Sbjct: 60 PRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEF 119
Query: 195 DGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY 254
DGILG+ + ++ ++PV+ NM+N+ LV + +FS + +RN E + G +DP +Y
Sbjct: 120 DGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQES---MLTLGAIDPSYY 176
Query: 255 KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHA 314
G +VPVT + YWQF + V I G C GGC AI D+GTS L GP++ I + A
Sbjct: 177 TGSLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQA 235
Query: 315 IGAT 318
IGAT
Sbjct: 236 IGAT 239
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE +DC LS +P V F I GK++ LTP
Sbjct: 244 GEFDIDCDNLSYMPTVVFEINGKMYPLTP 272
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 152/237 (64%), Gaps = 5/237 (2%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
L +Y+D+QYFG+I IGTPPQ FTV+FDTGSS+LWVPS C S C H ++ +SST+
Sbjct: 5 LTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCK-SNVCKNHHRFDPRKSSTF 63
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ GK IHYGTG++ GF D V + ++V +Q +T +P F ++FDGILGL
Sbjct: 64 RNLGKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLA 123
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ ++ +VPV+ NM+++ LV +FS + +RN +G + G +DP +Y G +V
Sbjct: 124 YPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNG---QGSMLTLGAIDPSYYTGSLHWV 180
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
PVT + YWQF + V I+G C GGC AI D+GTS+L GP++ I ++ AIGAT
Sbjct: 181 PVTLQQYWQFTVDSVTINGVAVA-CVGGCQAILDTGTSVLFGPSSDILKIQMAIGAT 236
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTP 455
GE V+C L S+P V F I G+ + L+P
Sbjct: 241 GEFDVNCGNLRSMPTVVFEINGRDYPLSP 269
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 144/237 (60%), Gaps = 5/237 (2%)
Query: 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTY 141
+KN D +Y+G I IGTPP++F VIFDTGSSNLWV SS C + AC H+K++ +SSTY
Sbjct: 6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS-AQACSNHNKFKPRQSSTY 64
Query: 142 KKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
+ GK+ D+ YGTG + G +D V +G +QE E+ EP A FDGILGL
Sbjct: 65 VETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLA 124
Query: 202 FQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
+ I+ AVPV+ NM +Q LV + +FSF+ + G E++ GG+D HY G ++
Sbjct: 125 YPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGG--ANGSEVMLGGVDNSHYTGSIHWI 182
Query: 262 PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
PVT + YWQ + + ++GQT C GC AI D+GTS + P + + + IGA+
Sbjct: 183 PVTAEKYWQVALDGITVNGQTAA-CE-GCQAIVDTGTSKIVAPVSALANIMKDIGAS 237
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 114/158 (72%), Gaps = 2/158 (1%)
Query: 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRS 138
V L NYMD QY+GEIGIGTPPQ F V+FDTGSSN+WVPSSKC AC +H + + S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 139 STYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGIL 198
S+YK NG + Y TG +SGF S+D + +G + V Q F E T P+L F+LA+FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 199 GLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNA 236
G+GF E ++G+ P++ N+++QG++ E VFSF++NR++
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDS 166
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 142/257 (55%), Gaps = 17/257 (6%)
Query: 68 RGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIAC 127
+ +LG +GD+ V L + + Y+GE IG Q F IFDTGS+NLWVPS++C +I C
Sbjct: 3 KPHLGNAGDS--VTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGC 59
Query: 128 YFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR---- 183
+ Y S +S TY+K+G +++Y +G +SGFFS+D V I +L +FIE T
Sbjct: 60 KTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFP-YKFIEVTDTNGF 118
Query: 184 EPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGE 243
EP+ T L +FDGI+GLG++++S+G PV + NQ + + VF+F+ D++ G
Sbjct: 119 EPAYT--LGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYL--PFDDKHKGY 174
Query: 244 IVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAG 303
+ GG++ Y+G+ TY + YWQ D+ D AI DSGTS +
Sbjct: 175 LTIGGIEDRFYEGQLTYEKLNHDLYWQVDL-----DLHFGNLTVEKATAIVDSGTSSITA 229
Query: 304 PTTIITQVNHAIGATGI 320
PT + + + I
Sbjct: 230 PTEFLNKFFEGLDVVKI 246
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 137/235 (58%), Gaps = 11/235 (4%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D++ L + + ++GE +G Q F +IFDTGS+NLWVPS KC SI C Y S +
Sbjct: 4 DVIELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SIGCSTKHLYDSSK 62
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSL--TFLLAKFD 195
S +Y+K+G +I YG+G + GFFS+D V +G L + +FIE T L + A+FD
Sbjct: 63 SKSYEKDGTKVEITYGSGTVRGFFSKDLVTLGYLSLP-YKFIEVTDTDDLEPLYTAAEFD 121
Query: 196 GILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYK 255
GILGLG++++S+G P+ + NQ +++ +F+F+ + ++ G + GG++ Y+
Sbjct: 122 GILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPVH--DKHSGYLTIGGIEEKFYE 179
Query: 256 GEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 310
GE TY + +WQ D+ DV G+T+ I DSGTS + PT+ I +
Sbjct: 180 GELTYEKLNHDLFWQVDL-DVNF-GKTS---MEKANVIVDSGTSTITAPTSFINK 229
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 138/257 (53%), Gaps = 13/257 (5%)
Query: 56 ESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLW 115
E+F Y + LG + D++ L + + ++GE +G Q F +IFDTGS+NLW
Sbjct: 32 ETFNFFKSGYMKQNYLG--SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLW 89
Query: 116 VPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKD 175
VPS KC S C + Y S +S +Y+K+G DI YG+G + GFFS+D V +G L +
Sbjct: 90 VPSKKCN-SSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMP- 147
Query: 176 QEFIEATREPSLTFLLA--KFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 233
+FIE T L + + +FDGILGLG++++S+G P+ + NQ ++ +F+F+
Sbjct: 148 YKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL- 206
Query: 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAI 293
+ G + GG++ Y+G TY + YWQ D+ DV QT I
Sbjct: 207 -PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDL-DVHFGKQT----MEKANVI 260
Query: 294 ADSGTSLLAGPTTIITQ 310
DSGT+ + P+ + +
Sbjct: 261 VDSGTTTITAPSEFLNK 277
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 130/235 (55%), Gaps = 11/235 (4%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D + L + + ++GE IGT Q F IFDTGS+NLWVPS C SI C Y +
Sbjct: 4 DSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCD-SIGCSTKHLYDASA 62
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLL--AKFD 195
S +Y+K+G +I YG+G + G+FS+D + +GDL + +FIE T L + ++FD
Sbjct: 63 SKSYEKDGTKVEISYGSGTVRGYFSKDVISLGDLSLP-YKFIEVTDADDLEPIYSGSEFD 121
Query: 196 GILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYK 255
GILGLG++++S+G PV + Q ++ +F+F+ + ++ G + GG++ D Y+
Sbjct: 122 GILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPVH--DKHVGYLTIGGIESDFYE 179
Query: 256 GEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 310
G TY + YWQ D+ D + A+ DSGTS + PT+ + +
Sbjct: 180 GPLTYEKLNHDLYWQIDL-----DIHFGKYVMQKANAVVDSGTSTITAPTSFLNK 229
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 130/235 (55%), Gaps = 11/235 (4%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D++ L + + ++GE +G Q F +IFDTGS+NLWVPS KC S C + Y S +
Sbjct: 6 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDSSK 64
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLA--KFD 195
S +Y+K+G DI YG+G + GFFS+D V +G L + +FIE L + + +FD
Sbjct: 65 SKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMP-YKFIEVIDTDDLEPIYSSVEFD 123
Query: 196 GILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYK 255
GILGLG++++S+G P+ + NQ ++ +F+F+ + + G + GG++ Y+
Sbjct: 124 GILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVH--DVHAGYLTIGGIEEKFYE 181
Query: 256 GEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 310
G TY + YWQ D+ DV QT I DSGT+ + P+ + +
Sbjct: 182 GNITYEKLNHDLYWQIDL-DVHFGKQT----MEKANVIVDSGTTTITAPSEFLNK 231
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 169 GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVF 228
G + V+ Q F EAT++P +TF+ AKFDGILG+ + ISV +PV+ N++ Q LV++ +F
Sbjct: 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60
Query: 229 SFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAG 288
SF+ +R+ D + GGE++ GG D +YKG +Y+ VT+K YWQ + V + T C
Sbjct: 61 SFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKE 119
Query: 289 GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQE 324
GC AI D+GTSL+ GP + ++ AIGA ++ E
Sbjct: 120 GCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGE 155
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 422 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPD 456
+P GE + C ++S+LP ++ +GGK + L+P+
Sbjct: 149 VPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPE 183
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 17/245 (6%)
Query: 71 LGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFH 130
LG S D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C
Sbjct: 123 LGSSNDN--IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTK 179
Query: 131 SKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR----EPS 186
Y S +S TY+K+G +++Y +G +SGFFS+D V +G+L + +FIE EP
Sbjct: 180 HLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEP- 237
Query: 187 LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246
T+ + FDGILGLG++++S+G P+ + NQ + +F+F+ ++ G +
Sbjct: 238 -TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTI 294
Query: 247 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306
GG++ Y+G TY + YWQ + +D I DSGTS + PT
Sbjct: 295 GGIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTD 349
Query: 307 IITQV 311
+ ++
Sbjct: 350 FLNKM 354
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 17/245 (6%)
Query: 71 LGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFH 130
LG S D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C
Sbjct: 50 LGSSNDN--IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTK 106
Query: 131 SKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR----EPS 186
Y S +S TY+K+G +++Y +G +SGFFS+D V +G+L + +FIE EP
Sbjct: 107 HLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEP- 164
Query: 187 LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246
T+ + FDGILGLG++++S+G P+ + NQ + +F+F+ ++ G +
Sbjct: 165 -TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTI 221
Query: 247 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306
GG++ Y+G TY + YWQ + +D I DSGTS + PT
Sbjct: 222 GGIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTD 276
Query: 307 IITQV 311
+ ++
Sbjct: 277 FLNKM 281
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 17/245 (6%)
Query: 71 LGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFH 130
LG S D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C
Sbjct: 1 LGSSNDN--IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTK 57
Query: 131 SKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR----EPS 186
Y S +S TY+K+G +++Y +G +SGFFS+D V +G+L + +FIE EP
Sbjct: 58 HLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEP- 115
Query: 187 LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246
T+ + FDGILGLG++++S+G P+ + NQ + +F+F+ ++ G +
Sbjct: 116 -TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTI 172
Query: 247 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306
GG++ Y+G TY + YWQ + +D I DSGTS + PT
Sbjct: 173 GGIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNISLEKANCIVDSGTSAITVPTD 227
Query: 307 IITQV 311
+ ++
Sbjct: 228 FLNKM 232
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 17/245 (6%)
Query: 71 LGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFH 130
LG S D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C
Sbjct: 1 LGSSNDN--IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTK 57
Query: 131 SKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR----EPS 186
Y S +S TY+K+G +++Y +G +SGFFS+D V +G+L + +FIE EP
Sbjct: 58 HLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEP- 115
Query: 187 LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246
T+ + FDGILGLG++++S+G P+ + NQ + +F+F+ ++ G +
Sbjct: 116 -TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTI 172
Query: 247 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306
GG++ Y+G TY + YWQ + +D I DSGTS + PT
Sbjct: 173 GGIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTD 227
Query: 307 IITQV 311
+ ++
Sbjct: 228 FLNKM 232
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C Y S +
Sbjct: 4 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 62
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR----EPSLTFLLAK 193
S TY+K+G +++Y +G +SGFFS+D V +G+L + +FIE EP T+ +
Sbjct: 63 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEP--TYTAST 119
Query: 194 FDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDH 253
FDGILGLG++++S+G P+ + NQ + +F+F+ ++ G + GG++
Sbjct: 120 FDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERF 177
Query: 254 YKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311
Y+G TY + YWQ + +D I DSGTS + PT + ++
Sbjct: 178 YEGPLTYEKLNHDLYWQ-----ITLDAHVGNISLEKANCIVDSGTSAITVPTDFLNKM 230
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D + L ++ + ++G+ +G Q FT I DTGS+NLWVPS KC + C Y S +
Sbjct: 4 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 62
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR----EPSLTFLLAK 193
S TY+K+G +++Y +G +SGFFS+D V +G+L + +FIE EP T+ +
Sbjct: 63 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEP--TYTAST 119
Query: 194 FDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDH 253
FDGILGLG++++S+G P+ + NQ + +F+F+ ++ G + GG++
Sbjct: 120 FDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERF 177
Query: 254 YKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311
Y+G TY + YWQ + +D I DSGTS + PT + ++
Sbjct: 178 YEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKM 230
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 81 ALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRSS 139
LKNYMDAQY+GEIGIGTPPQ FTV+FDTGSSNLWVPS C IAC+ H KY S +SS
Sbjct: 6 VLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSS 65
Query: 140 TYKKNGKSADIHYGTGAISGFFSEDHVKI 168
TY KNG S DIHYG+G++SG+ S+D V +
Sbjct: 66 TYVKNGTSFDIHYGSGSLSGYLSQDTVSV 94
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 133/237 (56%), Gaps = 14/237 (5%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGK 146
D +Y+G++ IGTP + F + FDTGSS+LW+ S+ C + +KY +SSTY+ +G+
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSRQTKYDPNQSSTYQADGR 71
Query: 147 SADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEI 205
+ I YG G + SG ++D+V +G L++K Q IE + + +F DG+LGLGF I
Sbjct: 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDTI 130
Query: 206 SVGKAVPV-WYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPV- 263
+ + V N+++QGL++ P+F + + A GGE +FGG D +KG T VP+
Sbjct: 131 TTVRGVKTPMDNLISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTKFKGSLTTVPID 189
Query: 264 TQKGYWQFDMGDVMIDGQTTG--FCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
+G+W + +D T G A I D+GT+LL P I V A GA+
Sbjct: 190 NSRGWWG-----ITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGAS 241
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 133/237 (56%), Gaps = 14/237 (5%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGK 146
D +Y+G++ IGTP + F + FDTGSS+LW+ S+ C + +KY +SSTY+ +G+
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSGQTKYDPNQSSTYQADGR 71
Query: 147 SADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEI 205
+ I YG G + SG ++D+V +G L++K Q IE + + +F DG+LGLGF I
Sbjct: 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDTI 130
Query: 206 SVGKAVPV-WYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPV- 263
+ + V N+++QGL++ P+F + + A GGE +FGG D +KG T VP+
Sbjct: 131 TTVRGVKTPMDNLISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTKFKGSLTTVPID 189
Query: 264 TQKGYWQFDMGDVMIDGQTTG--FCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
+G+W + +D T G A I D+GT+LL P I V A GA+
Sbjct: 190 NSRGWWG-----ITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGAS 241
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 317 ATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENN 376
A IVS ECK +VSQYGE I ++L++ P ++CSQ GLC DG++ VS I++VV
Sbjct: 3 AMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERET 62
Query: 377 HRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLP 423
+S G +C+ CEMAVVWMQNQLKQ T+E++L YVN+LC+++P
Sbjct: 63 EGSSVG-EAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 15/240 (6%)
Query: 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR 134
+ D V LK+ + FGE +G Q F +F T SSN+WVPS KC S +C + Y
Sbjct: 124 SEFDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYD 182
Query: 135 SGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR----EPSLTFL 190
S +S TY+K+ + G ISG FS+D V IG L V +FIE T EP +
Sbjct: 183 SSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPFYS-- 239
Query: 191 LAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMD 250
+ DG+ GLG++++S+G P + Q + + V+S + + + G + GG++
Sbjct: 240 ESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIE 297
Query: 251 PDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 310
+ G Y + WQ D+ D + I DS TS++ PT Q
Sbjct: 298 ERFFDGPLNYEKLNHDLMWQVDL-----DVHFGNVSSKKANVILDSATSVITVPTEFFNQ 352
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 112/237 (47%), Gaps = 15/237 (6%)
Query: 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGR 137
D V LK+ + FGE +G Q F +F T SSN+WVPS KC S +C + Y S +
Sbjct: 8 DNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYDSSK 66
Query: 138 SSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR----EPSLTFLLAK 193
S TY+K+ + G ISG FS+D V IG L V +FIE T EP + +
Sbjct: 67 SKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPFYS--ESD 123
Query: 194 FDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDH 253
DG+ GLG++++S+G P + Q + + V+S + + + G + GG++
Sbjct: 124 VDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERF 181
Query: 254 YKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 310
+ G Y + WQ D+ D + I DS TS++ PT Q
Sbjct: 182 FDGPLNYEKLNHDLMWQVDL-----DVHFGNVSSKKANVILDSATSVITVPTEFFNQ 233
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 123/259 (47%), Gaps = 26/259 (10%)
Query: 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR 134
G D ++ +Y + IGTP Q+F ++FDTGSS+ WVP C S C +
Sbjct: 5 GSVDTPGYYDFDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFD 64
Query: 135 SGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ--EFIEATREPSL----- 187
SST+K + +I YGTG +G + ED + IGD+ V Q +++ R P+
Sbjct: 65 PSASSTFKATNYNLNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTAEQSPN 124
Query: 188 --TFLLAKFDGILGLGFQEISVGKAV------PVWYNMVNQGLVNEPVFSFWFNRNADEE 239
FL DG+ G + + + +A V N+ QGL++ P+FS + N N+
Sbjct: 125 ADIFL----DGLFGAAYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTNSGT- 179
Query: 240 EGGEIVFGGMDPDHYKGEHTYVPVTQK--GY--WQFDMGDVMIDGQTTGFCAGGCAAIAD 295
GE+VFGG++ G+ Y V + GY W + + +DG + A D
Sbjct: 180 --GEVVFGGVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGSAAVRFSRPQAFTID 237
Query: 296 SGTSLLAGPTTIITQVNHA 314
+GT+ P++ +++ A
Sbjct: 238 TGTNFFIMPSSAASKIVKA 256
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 20/247 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ IGTPPQ ++ DTGSSN V + Y + + + RSSTY+ G
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVAGTP-----HSYIDTYFDTERSSTYRSKGFDVT 69
Query: 150 IHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLA--KFDGILGLGFQEIS- 206
+ Y G+ +GF ED V I AT S F L K++GILGL + ++
Sbjct: 70 VKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAK 129
Query: 207 VGKAVPVWYN-MVNQGLVNEP-VFSFW-----FNRNADEEEGGEIVFGGMDPDHYKGEHT 259
++ +++ +V Q N P VFS GG +V GG++P YKG+
Sbjct: 130 PSSSLETFFDSLVTQA--NIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIW 187
Query: 260 YVPVTQKGYWQFDMGDVMIDGQTTGF-CAGGCA--AIADSGTSLLAGPTTIITQVNHAIG 316
Y P+ ++ Y+Q ++ + I GQ+ C A AI DSGT+LL P + V A+
Sbjct: 188 YTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVA 247
Query: 317 ATGIVSQ 323
++ +
Sbjct: 248 RASLIPE 254
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 116/275 (42%), Gaps = 30/275 (10%)
Query: 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYR 134
G D L ++ +Y + IGTP Q+F ++FDTGSS+ WVP C S C +
Sbjct: 5 GSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFD 64
Query: 135 SGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFI--------EATREPS 186
SST+K+ + +I YGTG +G + D + +G VK Q A + P
Sbjct: 65 PSSSSTFKETDYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPD 124
Query: 187 LTFLLAKFDGILGLGFQEISVGKAV------PVWYNMVNQGLVNEPVFSFWFNRN----- 235
L DGI G + + + +A V N+ QGL++ PVFS + N N
Sbjct: 125 SELFL---DGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQ 181
Query: 236 ADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGY--WQFDMGDVMIDGQTTGFCAGGCAAI 293
+ GG ++T V ++ GY W + V IDG G A
Sbjct: 182 VVFGGVNNTLLGG------DIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFT 235
Query: 294 ADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAV 328
D+GT+ P++ +V A SQ+ V
Sbjct: 236 IDTGTNFFIAPSSFAEKVVKAALPDATESQQGYTV 270
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 114/252 (45%), Gaps = 17/252 (6%)
Query: 75 GDADIVALKN----YMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYF 129
+A IV L +++ QY G IG QNF +FD+ S N+ V S +C + C
Sbjct: 2 AEASIVPLYKLVHVFINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPN 59
Query: 130 HSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTF 189
KY + Y +G + TG+ G ED + I L Q+ + A E S
Sbjct: 60 LQKYEKLKPK-YISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLA-DELSQEV 117
Query: 190 LLAKFDGILGL---GFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246
+ D ++G+ G GK V N V + L+ PVFS R D E GEI+F
Sbjct: 118 CILSADVVVGIAAPGCPNALKGKTV--LENFVEENLI-APVFSIHHARFQDGEHFGEIIF 174
Query: 247 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306
GG D + GE TYVP+ W+F + V I G TT G AI D+ +++ GP
Sbjct: 175 GGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKI-GDTT-VAPAGTQAIIDTSKAIIVGPKA 232
Query: 307 IITQVNHAIGAT 318
+ +N AIG
Sbjct: 233 YVNPINEAIGCV 244
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 431 VDCSRLSSLPIVSFTIGGKIFDLT 454
+DCS++ SLP V+F I G+ F+++
Sbjct: 256 LDCSKIPSLPDVTFVINGRNFNIS 279
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 109/238 (45%), Gaps = 13/238 (5%)
Query: 85 YMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKK 143
+++ QY G IG QNF +FD+ S N+ V S +C + C KY + Y
Sbjct: 14 FINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPK-YIS 70
Query: 144 NGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGL--- 200
+G + TG+ G ED + I L Q+ + A E S + D ++G+
Sbjct: 71 DGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLA-DELSQEVCILSADVVVGIAAP 129
Query: 201 GFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTY 260
G GK V N V + L+ PVFS R D E GEI+FGG D + GE TY
Sbjct: 130 GCPNALKGKTV--LENFVEENLI-APVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTY 186
Query: 261 VPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318
VP+ W+F + V I G TT G AI D+ +++ GP + +N AIG
Sbjct: 187 VPLVGDDSWKFRLDGVKI-GDTT-VAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCV 242
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 431 VDCSRLSSLPIVSFTIGGKIFDLT 454
+DCS++ SLP V+F I G+ F+++
Sbjct: 254 LDCSKIPSLPDVTFVINGRNFNIS 277
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 29/242 (11%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIA--------CYFHSKYRSGRSSTY 141
Y +I +G+ Q VI DTGSS+LW+P S C Y S T
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTS 73
Query: 142 KKNGKSADIHYGTGAIS-GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGL 200
+ DI YG G+ + G +D V IG + V+DQ F + + GILG+
Sbjct: 74 QNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANV-------WSTSARKGILGI 126
Query: 201 GFQEISVGKAVPVWYN-----MVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYK 255
GFQ G+A Y+ + NQG++ + +S + N+ E G+I+FGG+D Y
Sbjct: 127 GFQS---GEATEFDYDNLPISLRNQGIIGKAAYSLYL--NSAEASTGQIIFGGIDKAKYS 181
Query: 256 GEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAI 315
G +P+T + + V + G+ + DSGT++ +I+ + +AI
Sbjct: 182 GSLVDLPITSEKKLTVGLRSVNVRGRNVD---ANTNVLLDSGTTISYFTRSIVRNILYAI 238
Query: 316 GA 317
GA
Sbjct: 239 GA 240
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y +G+G+P ++++ DTGSSN W+ + K Y ++ST
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYV-------------KTSTSSATSDKVS 60
Query: 150 IHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGK 209
+ YG+G+ SG D V +G L + Q A+R+ DGILG+G +++VG
Sbjct: 61 VTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSG----FDGVDGILGVGPVDLTVGT 116
Query: 210 AVP--------VWYNMVNQGLVNEPVFSFWFNRNADEEE-GGEIVFGGMDPDHYKGEHTY 260
P V N+ +QG + + + F E GE+ FG D Y G TY
Sbjct: 117 LSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITY 176
Query: 261 VPVTQ----KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 300
P+T YW + + G +T + A I D+GT+L
Sbjct: 177 TPITSTSPASAYWGINQS--IRYGSSTSILS-STAGIVDTGTTL 217
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 27/242 (11%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWV--PSSKCYFSIA------CYFHSKYRSGRSSTY 141
Y +I +G+ Q TV+ DTGSS+LWV ++C + + C + SS+
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 142 KKNGKSADIHYGTGAIS-GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGL 200
+ + I YG S G F +D V G + +K+Q+F + T + GI+G+
Sbjct: 74 QNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTT-------SVDQGIMGI 126
Query: 201 GFQEISVG----KAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKG 256
GF G VPV + QG++N+ +S + N +++ G+I+FGG+D Y G
Sbjct: 127 GFTADEAGYNLYDNVPV--TLKKQGIINKNAYSLYLN--SEDASTGKIIFGGVDNAKYTG 182
Query: 257 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316
T +PVT + +G + DG + A + DSGT++ + + +G
Sbjct: 183 TLTALPVTSSVELRVHLGSINFDGTSVSTNAD---VVLDSGTTITYFSQSTADKFARIVG 239
Query: 317 AT 318
AT
Sbjct: 240 AT 241
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 25/241 (10%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSS--KCYFSIACYFHSKYRSGRSSTYKKNGKS 147
Y ++ +G+ Q TVI DTGSS+ WV S +C + C + SS+YK G +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAA 73
Query: 148 ADIHYGTGAIS-GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQ--- 203
I YG G+ S G + +D V I + + Q+ + T+ + GILG+G+
Sbjct: 74 FTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQT-------SVDQGILGIGYTSNE 126
Query: 204 ---EISVGKAVPVWYN----MVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKG 256
+ S + P + N + QG + +S + N+ E G I+FGG+D Y G
Sbjct: 127 AVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYL--NSPSAETGTIIFGGVDNAKYSG 184
Query: 257 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316
+ VT + V + G + F G A+ DSGT+L P+ Q+ G
Sbjct: 185 KLVAEQVTSSQALTISLASVNLKGSSFSF---GDGALLDSGTTLTYFPSDFAAQLADKAG 241
Query: 317 A 317
A
Sbjct: 242 A 242
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIA-------CYFHSKYRSGRSSTYK 142
Y +I +G+ Q TV+ DTGSS+LWVP S+ C Y SS+ +
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNFCKNEGTYSPSSSSSSQ 73
Query: 143 KNGKSADIHYGTGAIS-GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201
I YG G S G + +D + G + + Q+F + T + GILG+G
Sbjct: 74 NLNSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTST-------SVDQGILGIG 126
Query: 202 FQEISV-GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTY 260
++ G V + NQG++++ +S + N + G+I+FGG+D Y G
Sbjct: 127 YKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSR--QATSGQIIFGGVDNAKYSGTLIA 184
Query: 261 VPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 300
+PVT + + V + GQ+ + DSGT++
Sbjct: 185 LPVTSDNELRIHLNTVKVAGQSIN---ADVDVLLDSGTTI 221
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 37/229 (16%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y +I +G+ Q VI DTGSS+LWVP + + + TY +G SA
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 150 --------IHYGTGAIS-GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFD----- 195
I YG G+ S G +D V G + +K+Q +LA D
Sbjct: 74 QDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQ-------------VLADVDSTSID 120
Query: 196 -GILGLGFQEISVGKA---VPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDP 251
GILG+G++ G + VPV + QG++ + +S + N + + G+I+FGG+D
Sbjct: 121 QGILGVGYKTNEAGGSYDNVPV--TLKKQGVIAKNAYSLYLN--SPDAATGQIIFGGVDN 176
Query: 252 DHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 300
Y G +PVT + +G V + G+T + DSGT++
Sbjct: 177 AKYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTI 223
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 37/229 (16%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y +I +G+ Q VI DTGSS+LWVP + + + TY +G SA
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 150 --------IHYGTGAIS-GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFD----- 195
I YG G+ S G +D V G + +K+Q +LA D
Sbjct: 74 QDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQ-------------VLADVDSTSID 120
Query: 196 -GILGLGFQEISVGKA---VPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDP 251
GILG+G++ G + VPV + QG++ + +S + N + + G+I+FGG+D
Sbjct: 121 QGILGVGYKTNEAGGSYDNVPV--TLKKQGVIAKNAYSLYLN--SPDSATGQIIFGGVDN 176
Query: 252 DHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 300
Y G +PVT + +G V + G+T + DSGT++
Sbjct: 177 AKYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTI 223
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 36/228 (15%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSG------------- 136
Y +I IG+ Q F VI DTGSS+LWVP + S+ C K R G
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDA----SVTC---DKPRPGQSADFCKGKGIYT 66
Query: 137 -RSSTYKKN-GKSADIHYGTGAIS-GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAK 193
+SST +N G I YG G+ S G +D V G + Q F + T+ +
Sbjct: 67 PKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKT-------SI 119
Query: 194 FDGILGLGFQ-EISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPD 252
GILG+G++ + G V + NQG++ + +S + N+ G+I+FGG+D
Sbjct: 120 PQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYL--NSPNAATGQIIFGGVDKA 177
Query: 253 HYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 300
Y G VPVT + + + G+ G + DSGT++
Sbjct: 178 KYSGSLIAVPVTSDRELRITLNSLKAVGKNIN---GNIDVLLDSGTTI 222
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 106/243 (43%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y GA +G D V I G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGA 317
I A
Sbjct: 268 IKA 270
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 106/243 (43%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y GA +G D V I G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGA 317
I A
Sbjct: 268 IKA 270
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 106/243 (43%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 94
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y GA +G D V I G V T + ++GILGL + EI+
Sbjct: 95 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 154
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 155 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 213
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 214 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 273
Query: 315 IGA 317
I A
Sbjct: 274 IKA 276
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 106/243 (43%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y GA +G D V I G V T + ++GILGL + EI+
Sbjct: 85 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 315 IGA 317
I A
Sbjct: 264 IKA 266
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 106/243 (43%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y GA +G D V I G V T + ++GILGL + EI+
Sbjct: 109 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 169 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 315 IGA 317
I A
Sbjct: 288 IKA 290
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGA 317
I A
Sbjct: 268 IKA 270
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 105/243 (43%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y GA +G D V I G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSG + L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFEAAVKS 267
Query: 315 IGA 317
I A
Sbjct: 268 IKA 270
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGA 317
I A
Sbjct: 268 IKA 270
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGA 317
I A
Sbjct: 268 IKA 270
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 150 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 315 IGA 317
I A
Sbjct: 269 IKA 271
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGA 317
I A
Sbjct: 268 IKA 270
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 150 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 315 IGA 317
I A
Sbjct: 269 IKA 271
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 86
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 87 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 146
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 147 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 205
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 206 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 265
Query: 315 IGA 317
I A
Sbjct: 266 IKA 268
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 91
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 92 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 151
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 152 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 210
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 211 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 270
Query: 315 IGA 317
I A
Sbjct: 271 IKA 273
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 192 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 315 IGA 317
I A
Sbjct: 311 IKA 313
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 315 IGA 317
I A
Sbjct: 264 IKA 266
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 75
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 76 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 135
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 136 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 194
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 195 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 254
Query: 315 IGA 317
I A
Sbjct: 255 IKA 257
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 148 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 315 IGA 317
I A
Sbjct: 267 IKA 269
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 315 IGA 317
I A
Sbjct: 254 IKA 256
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 315 IGA 317
I A
Sbjct: 252 IKA 254
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 148 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 315 IGA 317
I A
Sbjct: 267 IKA 269
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 315 IGA 317
I A
Sbjct: 264 IKA 266
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 138 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 315 IGA 317
I A
Sbjct: 257 IKA 259
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 148 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 315 IGA 317
I A
Sbjct: 267 IKA 269
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 76 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 130
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 131 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 190
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 191 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 249
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 250 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 309
Query: 315 IGA 317
I A
Sbjct: 310 IKA 312
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 315 IGA 317
I A
Sbjct: 264 IKA 266
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 129
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 130 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 315 IGA 317
I A
Sbjct: 249 IKA 251
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 315 IGA 317
I A
Sbjct: 252 IKA 254
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 109 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 169 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 315 IGA 317
I A
Sbjct: 288 IKA 290
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 192 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 315 IGA 317
I A
Sbjct: 311 IKA 313
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 315 IGA 317
I A
Sbjct: 254 IKA 256
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 85
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 86 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 145
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 146 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 204
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 205 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 264
Query: 315 IGA 317
I A
Sbjct: 265 IKA 267
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 315 IGA 317
I A
Sbjct: 254 IKA 256
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 89 VPYCQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGA 317
I A
Sbjct: 268 IKA 270
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 138 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 315 IGA 317
I A
Sbjct: 257 IKA 259
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 131
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 132 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 315 IGA 317
I A
Sbjct: 251 IKA 253
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 315 IGA 317
I A
Sbjct: 252 IKA 254
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 315 IGA 317
I A
Sbjct: 252 IKA 254
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 73
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 74 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 133
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 134 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 192
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 193 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 252
Query: 315 IGA 317
I A
Sbjct: 253 IKA 255
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 315 IGA 317
I A
Sbjct: 252 IKA 254
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F N E GG ++ GG+D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVAS 263
Query: 315 IGA 317
I A
Sbjct: 264 IKA 266
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 103/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 129
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F E GG ++ GG+D Y G
Sbjct: 130 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 315 IGA 317
I A
Sbjct: 249 IKA 251
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 103/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 68
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 69 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 128
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F E GG ++ GG+D Y G
Sbjct: 129 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 187
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 188 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 247
Query: 315 IGA 317
I A
Sbjct: 248 IKA 250
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 103/243 (42%), Gaps = 21/243 (8%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 150 IHYGTGAISGFFSEDHVKI--GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV 207
+ Y G G D V I G V T + ++GILGL + EI+
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 131
Query: 208 --GKAVPVWYNMVNQGLVNEPVFSFW-----FNRNADE---EEGGEIVFGGMDPDHYKGE 257
P + ++V Q V +FS F E GG ++ GG+D Y G
Sbjct: 132 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 258 HTYVPVTQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHA 314
Y P+ ++ Y++ + V I+GQ C +I DSGT+ L P + +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 315 IGA 317
I A
Sbjct: 251 IKA 253
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 16/230 (6%)
Query: 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYK--K 143
+D Y + IGTP Q + FDTGSS+LWV SS+ S + Y +S+T K
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVX--QTIYTPSKSTTAKLLS 70
Query: 144 NGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLL-AKFDGILGLGF 202
+ + + SG D V +G L V Q +E+ ++ S +F + DG+LGL F
Sbjct: 71 GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAF 129
Query: 203 QEISVGKAV--PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTY 260
++ +++ L + PVF+ +A G FG +D Y G TY
Sbjct: 130 STLNTVSPTQQKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITY 184
Query: 261 VPV-TQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIIT 309
V T++G+W++ + T F + IAD+GT+LL P T+++
Sbjct: 185 TAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 232
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 16/230 (6%)
Query: 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYK--K 143
+D Y + IGTP Q + FDTGSS+LWV SS+ S + Y +S+T K
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVX--QTIYTPSKSTTAKLLS 70
Query: 144 NGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLL-AKFDGILGLGF 202
+ + + SG D V +G L V Q +E+ ++ S +F + DG+LGL F
Sbjct: 71 GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAF 129
Query: 203 QEISVGKAV--PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTY 260
++ +++ L + PVF+ +A G FG +D Y G TY
Sbjct: 130 STLNTVSPTQQKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITY 184
Query: 261 VPV-TQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIIT 309
V T++G+W++ + T F + IAD+GT+LL P T+++
Sbjct: 185 TAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 232
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSL 300
GG+IV GG DP HY+G Y+ + + G WQ M V + G +T C GC A+ D+G S
Sbjct: 3 GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASY 61
Query: 301 LAGPTTIITQVNHAIGA 317
++G T+ I ++ A+GA
Sbjct: 62 ISGSTSSIEKLMEALGA 78
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Query: 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYK--K 143
+D Y + IGTP Q + FDTGSS+LWV SS+ S + Y +S+T K
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS-EVDGQTIYTPSKSTTAKLLS 71
Query: 144 NGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLL-AKFDGILGLGF 202
+ + + SG D V +G L V Q +E+ ++ S +F + DG+LGL F
Sbjct: 72 GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAF 130
Query: 203 QEISVGKAV--PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTY 260
++ +++ L + PVF+ +A G FG +D Y G TY
Sbjct: 131 STLNTVSPTQQKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITY 185
Query: 261 VPV-TQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIIT 309
V T++G+W++ + T F + IAD+GT+LL P T+++
Sbjct: 186 TAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 233
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Query: 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYK--K 143
+D Y + IGTP Q + FDTGSS+LWV SS+ S + Y +S+T K
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS-EVDGQTIYTPSKSTTAKLLS 71
Query: 144 NGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLL-AKFDGILGLGF 202
+ + + SG D V +G L V Q +E+ ++ S +F + DG+LGL F
Sbjct: 72 GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAF 130
Query: 203 QEISVGKAV--PVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTY 260
++ +++ L + PVF+ +A G FG +D Y G TY
Sbjct: 131 STLNTVSPTQXKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITY 185
Query: 261 VPV-TQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIIT 309
V T++G+W++ + T F + IAD+GT+LL P T+++
Sbjct: 186 TAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 233
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 23/231 (9%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK-NG 145
D +Y + IG N FDTGS++LWV S++ S HS Y S+T K+ +G
Sbjct: 14 DEEYITPVTIGGTTLNLN--FDTGSADLWVFSTELPASQQSG-HSVYN--PSATGKELSG 68
Query: 146 KSADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLL-AKFDGILGLGFQ 203
+ I YG G + SG D V +G + Q ++A ++ S F DG+LGL F
Sbjct: 69 YTWSISYGDGSSASGNVFTDSVTVGGVTAHGQA-VQAAQQISAQFQQDTNNDGLLGLAFS 127
Query: 204 EISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYV 261
I+ ++ +++ V L +P+F+ ++ G FG +D Y G TY
Sbjct: 128 SINTVQPQSQTTFFDTVKSSLA-QPLFAVALKH----QQPGVYDFGFIDSSKYTGSLTYT 182
Query: 262 PV-TQKGYWQFDMGDVMIDGQTTGFCAG-GCAAIADSGTSLLAGPTTIITQ 310
V +G+W F+ +D T G +G G + IAD+GT+LL ++++Q
Sbjct: 183 GVDNSQGFWSFN-----VDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQ 228
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 110/239 (46%), Gaps = 26/239 (10%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGK 146
D +Y ++ +G + FDTGS++LWV SS+ S H Y G SS K +G
Sbjct: 14 DEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERS-GHDYYTPG-SSAQKIDGA 69
Query: 147 SADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLL-AKFDGILGLGFQE 204
+ I YG G + SG +D V +G V D + +E+ + S F DG+LGL F
Sbjct: 70 TWSISYGDGSSASGDVYKDKVTVGG-VSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSS 128
Query: 205 ISVGKAVP--VWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVP 262
I+ + P +++ V L +EP+F+ NA G FG D Y G TY
Sbjct: 129 INTVQPTPQKTFFDNVKSSL-SEPIFAVALKHNAP----GVYDFGYTDSSKYTGSITYTD 183
Query: 263 V-TQKGYWQFDMGDVMIDG--QTTGFCAGGCAAIADSGTSLLAGPTTIIT----QVNHA 314
V +G+W F DG + + IAD+GT+LL +I+ QVN A
Sbjct: 184 VDNSQGFWGF-----TADGYSIGSDSSSDSITGIADTGTTLLLLDDSIVDAYYEQVNGA 237
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 17/220 (7%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGK 146
D +Y + +G + FDTGS++LWV S + S H Y S+T K +G
Sbjct: 13 DEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQT-GHDLYTPSSSAT-KLSGY 68
Query: 147 SADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLL-AKFDGILGLGFQE 204
S DI YG G + SG D V +G V +++ +EA + S F+ DG+LGL F
Sbjct: 69 SWDISYGDGSSASGDVYRDTVTVGG-VTTNKQAVEAASKISSEFVQDTANDGLLGLAFSS 127
Query: 205 ISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVP 262
I+ KA +++ V L + P+F+ +A G FG +D Y G TY
Sbjct: 128 INTVQPKAQTTFFDTVKSQL-DSPLFAVQLKHDAP----GVYDFGYIDDSKYTGSITYTD 182
Query: 263 V-TQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLL 301
+ +GYW F I + G +AIAD+GT+L+
Sbjct: 183 ADSSQGYWGFSTDGYSI--GDGSSSSSGFSAIADTGTTLI 220
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 102/229 (44%), Gaps = 31/229 (13%)
Query: 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGK 146
D++Y + IGTP Q + FDTGSS+LWV SS+ S A H+ Y +SST KK
Sbjct: 14 DSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATG-HAIYTPSKSSTSKKVSG 72
Query: 147 SA--DIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQE 204
++ + + SG D V IG V Q ATR + G++GL F
Sbjct: 73 ASWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDS 132
Query: 205 ISVGKAVP--VWYNMVNQGLVNEPVFSFWFNRNADEEEG--GEIVFGGMDPDHYKGEHTY 260
+ + P W++ L EP+F+ AD G G FG +D KG Y
Sbjct: 133 GNQVRPHPQKTWFSNAASSLA-EPLFT------ADLRHGQNGSYNFGYIDTSVAKGPVAY 185
Query: 261 VPV-TQKGYWQFDMGDVMIDGQTTGFCAGG-------CAAIADSGTSLL 301
PV +G+W+F +G+ GG IAD+GT+LL
Sbjct: 186 TPVDNSQGFWEF---------TASGYSVGGGKLNRNSIDGIADTGTTLL 225
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 103/237 (43%), Gaps = 23/237 (9%)
Query: 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD 149
Y+ E+ +G+PPQ ++ DTGSSN V ++ F H Y+ SSTY+ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IHYGTGAISGFFSEDHVKI---GDLVVKDQEFIEATREPSLTFLL-AKFDGILGLGFQEI 205
+ Y G G D V I ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 132
Query: 206 SV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPV 263
+ P + ++V Q V +FS GG+D Y G Y P+
Sbjct: 133 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGGGSMII------GGIDHSLYTGSLWYTPI 185
Query: 264 TQKGYWQFDMGDVMIDGQTTGF-CA--GGCAAIADSGTSLLAGPTTIITQVNHAIGA 317
++ Y++ + V I+GQ C +I DSGT+ L P + +I A
Sbjct: 186 RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKA 242
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 428 ESAVDCSRLSSLPIVSFTIGGKIFDLTPDQ 457
E VDC+ LSS+P VSFTIGGK F LTP+Q
Sbjct: 2 ELQVDCNTLSSMPNVSFTIGGKKFGLTPEQ 31
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSR 362
+S+EC+ VV YG I+++LL + P+ +CS + LC+ G+R
Sbjct: 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS--GTR 85
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGE 428
D C CE V + + N+T++ IL+ +++C +LP + E
Sbjct: 5 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 48
>pdb|4DDJ|A Chain A, Crystal Structure Of Saposin A In Complex With
Lauryldimethylamine-N- Oxide (Ldao)
Length = 83
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 388 CSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRL--SSLPIVSFT 445
C C+ V + LK N T+E IL Y+ + CD LP P + C + S LP++
Sbjct: 6 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKP--NMSASCKEIVDSYLPVILDI 63
Query: 446 IGGKI 450
I G++
Sbjct: 64 IKGEM 68
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 357
+S+EC+ VV YG I+++LL + P+ +CS + LC+
Sbjct: 43 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 79
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGE 428
D C CE V + + N+T++ IL+ +++C +LP + E
Sbjct: 2 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 45
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 357
+S+EC+ VV YG I+++LL + P+ +CS + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGE 428
D C CE V + + N+T++ IL+ +++C +LP + E
Sbjct: 4 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 357
+S+EC+ VV YG I+++LL + P+ +CS + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGE 428
D C CE V + + N+T++ IL+ +++C +LP + E
Sbjct: 4 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|2DOB|A Chain A, Crystal Structure Of Human Saposin A
Length = 83
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 388 CSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRL--SSLPIVSFT 445
C C+ V + LK N T+E IL Y+ + CD LP P + C + S LP++
Sbjct: 6 CDICKDVVTAAGDXLKDNATEEEILVYLEKTCDWLPKP--NXSASCKEIVDSYLPVILDI 63
Query: 446 IGGK 449
I G+
Sbjct: 64 IKGE 67
>pdb|2R0R|A Chain A, Crystal Structure Of Human Saposin D Variant Sapd K9e
pdb|2R0R|B Chain B, Crystal Structure Of Human Saposin D Variant Sapd K9e
Length = 85
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 386 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP 425
C CE V ++ L++N T++ IL + + C LP P
Sbjct: 2 GFCEVCEKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
>pdb|1N69|A Chain A, Crystal Structure Of Human Saposin B
pdb|1N69|B Chain B, Crystal Structure Of Human Saposin B
pdb|1N69|C Chain C, Crystal Structure Of Human Saposin B
Length = 81
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 325 CKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 356
CK +SQY E I M++ +P++IC+ +G C
Sbjct: 49 CKNYISQYSEIAIQMMMHM-QPKEICALVGFC 79
>pdb|3BQP|A Chain A, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQP|B Chain B, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQQ|C Chain C, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|A Chain A, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|B Chain B, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|D Chain D, Crystal Structure Of Human Saposin D (Triclinic)
Length = 80
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 381 GGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP 425
GGF C C+ V ++ L++N T++ IL + + C LP P
Sbjct: 2 GGF----CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 42
>pdb|2RB3|A Chain A, Crystal Structure Of Human Saposin D
pdb|2RB3|B Chain B, Crystal Structure Of Human Saposin D
pdb|2RB3|C Chain C, Crystal Structure Of Human Saposin D
pdb|2RB3|D Chain D, Crystal Structure Of Human Saposin D
Length = 85
Score = 31.6 bits (70), Expect = 0.94, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 386 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP 425
C C+ V ++ L++N T++ IL + + C LP P
Sbjct: 2 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
>pdb|2R1Q|A Chain A, Crystal Structure Of Iodinated Human Saposin D In Space
Group C2221
Length = 85
Score = 31.6 bits (70), Expect = 0.94, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 386 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP 425
C C+ V ++ L++N T++ IL + + C LP P
Sbjct: 2 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
>pdb|3OKZ|A Chain A, Crystal Structure Of Protein Gbs0355 From Streptococcus
Agalactiae, Northeast Structural Genomics Consortium
Target Sar127
pdb|3OKZ|B Chain B, Crystal Structure Of Protein Gbs0355 From Streptococcus
Agalactiae, Northeast Structural Genomics Consortium
Target Sar127
Length = 306
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 27 NGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRTS 61
+GG Y+I KK + NR+ LD K ++ +TS
Sbjct: 255 DGGSYQILTKKHLLAVQNRIKKELDKKRSKTLKTS 289
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
Length = 354
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVV 329
+ + G TG AG AA G + PTTI+ + G GI S++ K ++
Sbjct: 95 IAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAHDSSVGGKVGINSKQGKNLI 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,266,291
Number of Sequences: 62578
Number of extensions: 637327
Number of successful extensions: 1617
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 170
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)