Query 012697
Match_columns 458
No_of_seqs 281 out of 2082
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 5.3E-54 1.2E-58 446.2 32.6 284 29-318 63-356 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 1.6E-51 3.4E-56 412.1 30.3 270 84-458 1-271 (325)
3 cd05478 pepsin_A Pepsin A, asp 100.0 3.9E-51 8.6E-56 407.8 30.4 234 81-318 2-235 (317)
4 cd06098 phytepsin Phytepsin, a 100.0 8.6E-51 1.9E-55 405.3 28.4 232 80-311 1-232 (317)
5 cd05486 Cathespin_E Cathepsin 100.0 1.1E-50 2.4E-55 404.4 28.3 227 90-318 1-227 (316)
6 cd05488 Proteinase_A_fungi Fun 100.0 3.2E-50 7E-55 401.7 30.0 234 80-318 1-234 (320)
7 cd05485 Cathepsin_D_like Cathe 100.0 6E-50 1.3E-54 401.1 30.6 237 80-318 2-239 (329)
8 cd05487 renin_like Renin stimu 100.0 5.9E-50 1.3E-54 400.8 30.5 235 82-318 1-236 (326)
9 cd05477 gastricsin Gastricsins 100.0 6.2E-50 1.3E-54 399.3 30.5 230 87-318 1-230 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 2.8E-48 6.2E-53 400.5 33.5 234 76-318 126-361 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.4E-47 7.3E-52 391.8 33.4 234 76-318 125-360 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 1.5E-44 3.3E-49 359.4 19.7 227 89-318 1-228 (317)
13 cd06097 Aspergillopepsin_like 100.0 9.8E-43 2.1E-47 341.0 27.6 219 90-316 1-225 (278)
14 KOG1339 Aspartyl protease [Pos 100.0 1.6E-42 3.5E-47 355.7 25.5 231 78-318 35-297 (398)
15 cd05473 beta_secretase_like Be 100.0 1.8E-41 3.9E-46 344.5 26.4 223 88-318 2-240 (364)
16 PLN03146 aspartyl protease fam 100.0 3.9E-40 8.5E-45 340.3 28.7 216 86-317 81-335 (431)
17 cd05471 pepsin_like Pepsin-lik 100.0 7.5E-39 1.6E-43 313.0 30.6 227 90-318 1-231 (283)
18 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.3E-39 9.3E-44 322.3 23.4 236 88-344 2-277 (326)
19 cd05474 SAP_like SAPs, pepsin- 100.0 1.8E-38 3.8E-43 313.2 25.7 192 89-318 2-207 (295)
20 cd05472 cnd41_like Chloroplast 100.0 4.8E-39 1E-43 318.2 21.5 191 89-318 1-200 (299)
21 cd05475 nucellin_like Nucellin 100.0 6.2E-35 1.3E-39 285.1 23.0 205 89-344 2-220 (273)
22 cd05476 pepsin_A_like_plant Ch 100.0 2.4E-35 5.3E-40 286.7 19.9 199 89-344 1-215 (265)
23 cd05489 xylanase_inhibitor_I_l 100.0 6.3E-32 1.4E-36 273.4 21.5 212 96-318 2-258 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 1.7E-22 3.6E-27 169.6 13.4 108 92-200 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 4E-21 8.6E-26 173.3 15.1 136 90-248 1-164 (164)
26 PF05184 SapB_1: Saposin-like 98.8 4.1E-09 8.9E-14 71.1 3.2 39 385-423 1-39 (39)
27 PF14541 TAXi_C: Xylanase inhi 98.7 1.7E-08 3.7E-13 90.7 4.3 51 268-318 1-58 (161)
28 cd05483 retropepsin_like_bacte 98.1 1.2E-05 2.5E-10 65.0 6.8 92 89-202 2-94 (96)
29 TIGR02281 clan_AA_DTGA clan AA 97.4 0.0012 2.6E-08 56.2 9.2 101 80-202 2-103 (121)
30 PF13650 Asp_protease_2: Aspar 96.8 0.0079 1.7E-07 47.6 8.0 88 92-201 1-89 (90)
31 PF11925 DUF3443: Protein of u 96.6 0.02 4.4E-07 57.0 11.1 195 90-306 24-272 (370)
32 smart00741 SapB Saposin (B) Do 96.4 0.0045 9.8E-08 47.3 3.9 38 387-424 2-39 (76)
33 cd05479 RP_DDI RP_DDI; retrope 95.6 0.071 1.5E-06 45.5 8.2 90 87-201 14-106 (124)
34 KOG1340 Prosaposin [Lipid tran 95.1 0.015 3.3E-07 54.2 2.6 88 324-423 78-166 (218)
35 COG3577 Predicted aspartyl pro 94.6 0.24 5.2E-06 45.5 9.0 88 76-178 92-180 (215)
36 cd05484 retropepsin_like_LTR_2 94.5 0.19 4.2E-06 40.2 7.4 75 90-182 1-78 (91)
37 PF03489 SapB_2: Saposin-like 91.7 0.018 3.8E-07 37.5 -2.2 33 324-356 3-35 (35)
38 cd06095 RP_RTVL_H_like Retrope 91.7 1.1 2.3E-05 35.5 7.6 81 93-202 2-84 (86)
39 PF07966 A1_Propeptide: A1 Pro 87.6 0.26 5.6E-06 30.7 0.9 24 30-53 1-24 (29)
40 PF13975 gag-asp_proteas: gag- 86.0 1.3 2.8E-05 33.8 4.2 33 87-121 6-38 (72)
41 TIGR02281 clan_AA_DTGA clan AA 77.0 5.1 0.00011 33.9 5.0 37 265-311 8-44 (121)
42 PF13650 Asp_protease_2: Aspar 76.3 3 6.6E-05 32.4 3.3 29 276-311 3-31 (90)
43 PF00077 RVP: Retroviral aspar 75.7 3.8 8.2E-05 33.0 3.8 29 91-121 7-35 (100)
44 PF13975 gag-asp_proteas: gag- 71.0 6.1 0.00013 30.0 3.7 29 276-311 13-41 (72)
45 KOG1340 Prosaposin [Lipid tran 68.8 4.1 8.8E-05 38.2 2.7 46 385-435 36-81 (218)
46 cd05484 retropepsin_like_LTR_2 67.8 6.5 0.00014 31.2 3.4 30 276-312 5-34 (91)
47 PF07172 GRP: Glycine rich pro 64.5 4.5 9.8E-05 32.8 1.8 19 3-21 1-19 (95)
48 cd05483 retropepsin_like_bacte 63.6 11 0.00024 29.5 4.0 29 276-311 7-35 (96)
49 PF09668 Asp_protease: Asparty 63.3 14 0.0003 31.6 4.6 78 88-181 23-102 (124)
50 cd06095 RP_RTVL_H_like Retrope 62.4 8.4 0.00018 30.3 3.1 29 276-311 3-31 (86)
51 cd05482 HIV_retropepsin_like R 61.2 12 0.00025 29.8 3.6 27 93-121 2-28 (87)
52 cd05479 RP_DDI RP_DDI; retrope 55.7 13 0.00028 31.5 3.2 29 276-311 21-49 (124)
53 PF08284 RVP_2: Retroviral asp 54.2 83 0.0018 27.1 8.1 29 88-118 20-48 (135)
54 COG3577 Predicted aspartyl pro 48.4 35 0.00076 31.7 4.9 37 266-312 103-139 (215)
55 PF12384 Peptidase_A2B: Ty3 tr 47.2 25 0.00054 31.4 3.7 29 91-119 34-62 (177)
56 smart00741 SapB Saposin (B) Do 45.7 5.3 0.00012 29.8 -0.6 37 320-356 40-76 (76)
57 PF00077 RVP: Retroviral aspar 44.8 18 0.00039 28.9 2.4 26 276-308 10-35 (100)
58 TIGR03698 clan_AA_DTGF clan AA 44.4 16 0.00035 30.1 2.0 23 289-311 16-39 (107)
59 cd05481 retropepsin_like_LTR_1 41.2 27 0.00059 28.0 2.8 23 290-312 11-33 (93)
60 cd06094 RP_Saci_like RP_Saci_l 39.3 1.8E+02 0.0039 23.3 7.1 22 101-122 8-29 (89)
61 PF09668 Asp_protease: Asparty 37.8 37 0.0008 29.0 3.2 29 276-311 29-57 (124)
62 COG5550 Predicted aspartyl pro 37.2 21 0.00046 30.3 1.6 23 291-313 28-51 (125)
63 PF11938 DUF3456: TLR4 regulat 37.1 52 0.0011 28.9 4.2 38 386-423 2-66 (151)
64 PF13798 PCYCGC: Protein of un 36.8 51 0.0011 29.2 4.0 38 383-420 109-146 (158)
65 PF00085 Thioredoxin: Thioredo 36.2 1.3E+02 0.0029 23.3 6.3 52 383-451 24-84 (103)
66 cd02957 Phd_like Phosducin (Ph 35.5 1.1E+02 0.0024 25.0 5.8 51 383-451 31-89 (113)
67 cd02989 Phd_like_TxnDC9 Phosdu 32.2 1.3E+02 0.0029 24.7 5.8 51 383-451 29-88 (113)
68 cd03033 ArsC_15kD Arsenate Red 30.0 66 0.0014 26.8 3.5 35 384-418 6-49 (113)
69 TIGR03698 clan_AA_DTGF clan AA 29.9 62 0.0013 26.6 3.3 66 92-173 2-73 (107)
70 cd02985 TRX_CDSP32 TRX family, 29.7 1.6E+02 0.0034 23.6 5.7 22 383-404 22-43 (103)
71 PRK10853 putative reductase; P 28.5 78 0.0017 26.6 3.7 35 383-417 5-48 (118)
72 COG1393 ArsC Arsenate reductas 25.9 75 0.0016 26.7 3.2 37 383-419 6-51 (117)
73 COG4714 Uncharacterized membra 24.8 65 0.0014 30.3 2.7 25 1-25 1-25 (303)
74 PF03960 ArsC: ArsC family; I 24.1 89 0.0019 25.6 3.3 34 385-418 3-45 (110)
75 TIGR01165 cbiN cobalt transpor 22.1 89 0.0019 25.0 2.6 25 1-25 1-25 (91)
76 cd03035 ArsC_Yffb Arsenate Red 21.7 1.2E+02 0.0025 24.9 3.5 34 384-417 5-47 (105)
77 cd03034 ArsC_ArsC Arsenate Red 20.8 1E+02 0.0023 25.4 3.1 36 383-418 4-48 (112)
78 TIGR00014 arsC arsenate reduct 20.3 92 0.002 25.8 2.6 36 383-418 4-48 (114)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=5.3e-54 Score=446.18 Aligned_cols=284 Identities=35% Similarity=0.611 Sum_probs=234.0
Q ss_pred ceEEEeeeccccchhhhhhhcccccccchhhhhhccccccCCCCCCCCcceEeeeeecCceEEEEEEEcCCCcEEEEEEc
Q 012697 29 GLYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFD 108 (458)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~n~~~~~Y~~~i~IGtP~Q~~~v~lD 108 (458)
.++|+||+|..+.++++.+.+ .+....... ..+.+...+.. .......+||.|+.|.+|+++|+||||||+|.|++|
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~D 139 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNS-EKGYISRVL-TKHKYLETKDP-NGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFD 139 (482)
T ss_pred heEEeeeEEcchHHHhhhhHH-HHHhhhhhh-hcccccccccc-ccccccceecccccCCeEEEEEEeCCCCceEEEEEe
Confidence 589999999877766544430 000000000 01111111100 001346799999999999999999999999999999
Q ss_pred CCCCceEEeCCCCCCCcccCCCCCccCCCCCceee--CCc---eEEEEeccCeEEeeEEEEEEEeCceeeccceEEEEEe
Q 012697 109 TGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK--NGK---SADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR 183 (458)
Q Consensus 109 TGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~--~~~---~~~i~Y~~Gs~~G~~~~D~v~igg~~i~~~~Fg~~~~ 183 (458)
|||+++||++..|. ..+|..|+.||+++|+||++ .+. .+.+.|++|++.|.++.|+|++|+..+++|.||++..
T Consensus 140 TGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~ 218 (482)
T PTZ00165 140 TGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIE 218 (482)
T ss_pred CCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEe
Confidence 99999999999996 56899999999999999998 555 6789999999999999999999999999999999998
Q ss_pred cCCcccccccccccccCCCCcC---cCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCcEEEECcccCCCC--ccce
Q 012697 184 EPSLTFLLAKFDGILGLGFQEI---SVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY--KGEH 258 (458)
Q Consensus 184 ~~~~~~~~~~~~GIlGLg~~~~---s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~fGgiD~s~~--~g~l 258 (458)
.++..|....+|||||||++.. +.....|++++|++||+|++++||+||.+..+ .+|+|+|||+|++++ .|++
T Consensus 219 ~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i 296 (482)
T PTZ00165 219 ESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKI 296 (482)
T ss_pred ccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCce
Confidence 7665677778999999999987 33457899999999999999999999986532 279999999999877 5789
Q ss_pred EEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 259 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 259 ~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
+|+|+.+..||.|.+++|+||++.+..+..++.||+||||+++++|.+++++|.+++++.
T Consensus 297 ~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~ 356 (482)
T PTZ00165 297 WWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE 356 (482)
T ss_pred EEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc
Confidence 999999999999999999999988766667789999999999999999999999998754
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.6e-51 Score=412.10 Aligned_cols=270 Identities=53% Similarity=0.990 Sum_probs=241.3
Q ss_pred eecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCC-CcccCCCCCccCCCCCceeeCCceEEEEeccCeEEeeEE
Q 012697 84 NYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFS 162 (458)
Q Consensus 84 n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~G~~~ 162 (458)
|+.|.+|+++|.||||||++.|++||||+++||++..|.. ...|..++.|+|++|+||+..++.|.+.|++|+++|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4568999999999999999999999999999999999953 247888899999999999999999999999999999999
Q ss_pred EEEEEeCceeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCc
Q 012697 163 EDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 242 (458)
Q Consensus 163 ~D~v~igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G 242 (458)
+|+|++|+..++++.||++....+..+....++||||||++..+.....|++++|++||.|++++||+||.+..+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999888777789999999999999999999998754333479
Q ss_pred EEEECcccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCccccc
Q 012697 243 EIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVS 322 (458)
Q Consensus 243 ~L~fGgiD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~~~~~ 322 (458)
+|+|||+|+++|.|++.|+|+.+..+|.|.+++|+||+.... +.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTL-CKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeee-cCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 999999999999999999999988999999999999886432 445678999999999999999999999999754
Q ss_pred cccceeecccchhhhhhhccccCcccccccCCccccCCCcceecccccccccCCcCCCCCCCCccchhhHHHHHHHHHHH
Q 012697 323 QECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQL 402 (458)
Q Consensus 323 vpC~~~~~~fg~~~i~v~~~~~~~~~~c~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 402 (458)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHHHHhhcccCCCCCCcceEeCCcCCCCCcEEEEECCEEeecCCCCC
Q 012697 403 KQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQV 458 (458)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~ 458 (458)
+...+.|.++|++...+|.|+|+|+|+.|.|+|++|
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y 271 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDY 271 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHe
Confidence 223456889999999999999999999999999876
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3.9e-51 Score=407.77 Aligned_cols=234 Identities=47% Similarity=0.904 Sum_probs=213.1
Q ss_pred eeeeecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCeEEee
Q 012697 81 ALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (458)
Q Consensus 81 pl~n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~G~ 160 (458)
||+|+.+.+|+++|+||||||++.|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|+++|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 799999999999999999999999999999999999999996 4579889999999999999999999999999999999
Q ss_pred EEEEEEEeCceeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCC
Q 012697 161 FSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (458)
Q Consensus 161 ~~~D~v~igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~ 240 (458)
+++|+|++|+..++++.||++....+..+....++||||||++..+.....|++++|++||+|++++||+||.+... .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987655333344579999999998877777889999999999999999999998642 3
Q ss_pred CcEEEECcccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 241 ~G~L~fGgiD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
+|+|+|||+|+++|.|+++|+|+....+|.|.++++.||++.+. ...+..++|||||+++++|.+++++|++++++.
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~ 235 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGAS 235 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCc
Confidence 79999999999999999999999989999999999999999875 334578999999999999999999999999765
No 4
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=8.6e-51 Score=405.26 Aligned_cols=232 Identities=86% Similarity=1.461 Sum_probs=211.0
Q ss_pred EeeeeecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCeEEe
Q 012697 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (458)
Q Consensus 80 ~pl~n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~G 159 (458)
+||.|+.|.+|+++|+||||||++.|+|||||+++||++..|.....|..++.|++++|+||+..+..+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999965568999999999999999999999999999999999
Q ss_pred eEEEEEEEeCceeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCC
Q 012697 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (458)
Q Consensus 160 ~~~~D~v~igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~ 239 (458)
.+++|+|++|+..++++.||++....+..+....++||||||++..+.....|++++|++||+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776655666778999999999887777788999999999999999999998764334
Q ss_pred CCcEEEECcccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHH
Q 012697 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (458)
Q Consensus 240 ~~G~L~fGgiD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (458)
..|+|+|||+|+++|.|+++|+|+...+||.|.+++|+||++.+..+.....++|||||+++++|.+++++|
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i 232 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQI 232 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhh
Confidence 489999999999999999999999988999999999999998876666678899999999999999865443
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.1e-50 Score=404.40 Aligned_cols=227 Identities=48% Similarity=0.926 Sum_probs=207.0
Q ss_pred EEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCeEEeeEEEEEEEeC
Q 012697 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIG 169 (458)
Q Consensus 90 Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~G~~~~D~v~ig 169 (458)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+||+..++.|.+.|++|++.|.+++|+|++|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 5589989999999999999999999999999999999999999999
Q ss_pred ceeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCcEEEECcc
Q 012697 170 DLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGM 249 (458)
Q Consensus 170 g~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~fGgi 249 (458)
+..++++.||++....+..+....++||||||++..+.....|++++|++||+|+.++||+||.+.++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877665455566789999999998877777889999999999999999999997644445799999999
Q ss_pred cCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 250 DPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 250 D~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
|+++|.|++.|+|+.+.+||.|.+++|+|+++.+. ...+..++|||||+++++|.+++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~ 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999998764 345678999999999999999999999988765
No 6
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.2e-50 Score=401.66 Aligned_cols=234 Identities=52% Similarity=0.966 Sum_probs=213.2
Q ss_pred EeeeeecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCeEEe
Q 012697 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (458)
Q Consensus 80 ~pl~n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~G 159 (458)
+||.|+.+..|+++|+||||+|++.|++||||+++||++..|. ...|..++.|++++|+||+..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 4789999999999999999999999999999999999999996 557988899999999999999999999999999999
Q ss_pred eEEEEEEEeCceeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCC
Q 012697 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (458)
Q Consensus 160 ~~~~D~v~igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~ 239 (458)
.+++|++++|+..++++.|+++....+..+....++||||||++..+.....|.+.+|++||+|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998765544555678999999999887666678888999999999999999999863 2
Q ss_pred CCcEEEECcccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 240 ~~G~L~fGgiD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
..|.|+|||+|++++.|+++|+|+...++|.|.+++|+||++.+.. ....++|||||+++++|.+++++|.+++++.
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~ 234 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAK 234 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCc
Confidence 3799999999999999999999999889999999999999987643 4568999999999999999999999999765
No 7
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=6e-50 Score=401.12 Aligned_cols=237 Identities=61% Similarity=1.097 Sum_probs=214.5
Q ss_pred EeeeeecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCC-CcccCCCCCccCCCCCceeeCCceEEEEeccCeEE
Q 012697 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS 158 (458)
Q Consensus 80 ~pl~n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~ 158 (458)
.||+|+.|.+|+++|+||||+|++.|++||||+++||++..|.. ...|..++.|+|++|+|++..++.|.+.|++|+++
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999952 23688888999999999999999999999999999
Q ss_pred eeEEEEEEEeCceeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCC
Q 012697 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADE 238 (458)
Q Consensus 159 G~~~~D~v~igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~ 238 (458)
|.+++|++++|+..++++.||++....+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+.++.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876554455567899999999988776778899999999999999999999876543
Q ss_pred CCCcEEEECcccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 239 EEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 239 ~~~G~L~fGgiD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
...|+|+|||+|+++|.|+++|+|+...++|.|.++++.++++.+ ...+..+||||||+++++|.+++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~--~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEF--CSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeee--cCCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 447999999999999999999999998999999999999999876 345678999999999999999999999999765
No 8
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=5.9e-50 Score=400.78 Aligned_cols=235 Identities=49% Similarity=0.956 Sum_probs=211.1
Q ss_pred eeeecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCC-CcccCCCCCccCCCCCceeeCCceEEEEeccCeEEee
Q 012697 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (458)
Q Consensus 82 l~n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~G~ 160 (458)
|.|+.+.+|+++|+||||+|+++|++||||+++||++..|.. ...|..++.|+|++|+||+..++.|.+.|++|+++|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 467889999999999999999999999999999999999963 2478889999999999999999999999999999999
Q ss_pred EEEEEEEeCceeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCC
Q 012697 161 FSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (458)
Q Consensus 161 ~~~D~v~igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~ 240 (458)
+++|+|++|+..+. +.||++.......+....++||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998874 88999987654445556789999999988777777899999999999999999999987653345
Q ss_pred CcEEEECcccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 241 ~G~L~fGgiD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
.|+|+|||+|+++|.|+++|+|+...++|.|.+++++|+++.+. +..+..++|||||+++++|.+++++|++++++.
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~ 236 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAK 236 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCc
Confidence 89999999999999999999999989999999999999998764 345678999999999999999999999999865
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=6.2e-50 Score=399.33 Aligned_cols=230 Identities=47% Similarity=0.915 Sum_probs=209.6
Q ss_pred CceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCeEEeeEEEEEE
Q 012697 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHV 166 (458)
Q Consensus 87 ~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~G~~~~D~v 166 (458)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.|++.|++|++.|.++.|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999996 4579989999999999999999999999999999999999999
Q ss_pred EeCceeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCcEEEE
Q 012697 167 KIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246 (458)
Q Consensus 167 ~igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~f 246 (458)
++|+..++++.||++....+..+.....+||||||++..+....++++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998865544445567999999999887777789999999999999999999998753 223799999
Q ss_pred CcccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 247 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 247 GgiD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
||+|++++.|++.|+|+....+|.|.+++++|+++.+..+..+..+||||||+++++|.+++++|++.+++.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 230 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ 230 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCc
Confidence 999999999999999999899999999999999988765556678999999999999999999999999866
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.8e-48 Score=400.47 Aligned_cols=234 Identities=35% Similarity=0.681 Sum_probs=208.6
Q ss_pred CcceEeeeeecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccC
Q 012697 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (458)
Q Consensus 76 ~~~~~pl~n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~G 155 (458)
....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.||+++|+||+..++.+.+.|++|
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~G 204 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVSG 204 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCCC
Confidence 56789999999999999999999999999999999999999999996 56799999999999999999999999999999
Q ss_pred eEEeeEEEEEEEeCceeeccceEEEEEecCCc--ccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEec
Q 012697 156 AISGFFSEDHVKIGDLVVKDQEFIEATREPSL--TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 233 (458)
Q Consensus 156 s~~G~~~~D~v~igg~~i~~~~Fg~~~~~~~~--~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~ 233 (458)
+++|.+++|+|++|+..++ ..|+++....+. .+....+|||||||++..+.....|++.+|++||.|++++||+||.
T Consensus 205 svsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~ 283 (453)
T PTZ00147 205 TVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLP 283 (453)
T ss_pred CEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEec
Confidence 9999999999999999988 468887765431 2334578999999999888777889999999999999999999998
Q ss_pred CCCCCCCCcEEEECcccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHH
Q 012697 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 313 (458)
Q Consensus 234 ~~~~~~~~G~L~fGgiD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~ 313 (458)
+... ..|.|+|||+|+++|.|++.|+|+....||.|.++ +.+++.. .....+||||||+++++|.++++++++
T Consensus 284 ~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~~ 356 (453)
T PTZ00147 284 PEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFVE 356 (453)
T ss_pred CCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHHH
Confidence 7532 37999999999999999999999998899999998 4777643 246789999999999999999999999
Q ss_pred HhcCc
Q 012697 314 AIGAT 318 (458)
Q Consensus 314 ~i~~~ 318 (458)
++++.
T Consensus 357 ~l~~~ 361 (453)
T PTZ00147 357 SLDVF 361 (453)
T ss_pred HhCCe
Confidence 99764
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.4e-47 Score=391.79 Aligned_cols=234 Identities=35% Similarity=0.719 Sum_probs=207.1
Q ss_pred CcceEeeeeecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccC
Q 012697 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (458)
Q Consensus 76 ~~~~~pl~n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~G 155 (458)
....+||.++.+.+|+++|+||||||++.|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~G 203 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGSG 203 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECCc
Confidence 56679999999999999999999999999999999999999999996 56799999999999999999999999999999
Q ss_pred eEEeeEEEEEEEeCceeeccceEEEEEecCC--cccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEec
Q 012697 156 AISGFFSEDHVKIGDLVVKDQEFIEATREPS--LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 233 (458)
Q Consensus 156 s~~G~~~~D~v~igg~~i~~~~Fg~~~~~~~--~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~ 233 (458)
+++|.+++|+|++|+..++ ..|+++..... ..+....++||||||++..+.....|++.+|++||+|++++||+||.
T Consensus 204 sv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~ 282 (450)
T PTZ00013 204 TVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLP 282 (450)
T ss_pred eEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEec
Confidence 9999999999999999987 57887765432 12344578999999999887777789999999999999999999998
Q ss_pred CCCCCCCCcEEEECcccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHH
Q 012697 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 313 (458)
Q Consensus 234 ~~~~~~~~G~L~fGgiD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~ 313 (458)
+.. ...|.|+|||+|+++|.|+++|+|+....||.|.++ +.+|.... ....+++||||+++++|.++++++++
T Consensus 283 ~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~ 355 (450)
T PTZ00013 283 VHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFA 355 (450)
T ss_pred CCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHH
Confidence 653 237999999999999999999999998899999998 66664432 35679999999999999999999999
Q ss_pred HhcCc
Q 012697 314 AIGAT 318 (458)
Q Consensus 314 ~i~~~ 318 (458)
++++.
T Consensus 356 ~l~~~ 360 (450)
T PTZ00013 356 NLNVI 360 (450)
T ss_pred HhCCe
Confidence 98765
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.5e-44 Score=359.40 Aligned_cols=227 Identities=38% Similarity=0.712 Sum_probs=203.5
Q ss_pred eEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCeEEeeEEEEEEEe
Q 012697 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKI 168 (458)
Q Consensus 89 ~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~G~~~~D~v~i 168 (458)
+|+++|+||||+|+++|++||||+++||++..|..+..|..+..|++++|+|++..++.+.+.|++|+++|.+++|+|++
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999973346788899999999999999999999999999999999999999
Q ss_pred CceeeccceEEEEEecCCcccccccccccccCCCCcCcCCC-CCchHHHHHhCCCCCCCeEEEEecCCCCCCCCcEEEEC
Q 012697 169 GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGK-AVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 247 (458)
Q Consensus 169 gg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~-~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~fG 247 (458)
|+..+.++.||++....+..+....++||||||++..+... ..+++++|+++|+|++++||++|.+.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876655667788999999988776554 788999999999999999999999875 337999999
Q ss_pred cccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 248 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 248 giD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
|+|+++|.|++.|+|+...++|.+.+++|.+++.... ......++||||++++++|.+++++|++++++.
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~-~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~ 228 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVF-SSSGQQAILDTGTSYIYLPRSIFDAIIKALGGS 228 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEE-EEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTE
T ss_pred ccccccccCceeccCcccccccccccccccccccccc-cccceeeecccccccccccchhhHHHHhhhccc
Confidence 9999999999999999999999999999999998332 345578999999999999999999999999876
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=9.8e-43 Score=341.03 Aligned_cols=219 Identities=34% Similarity=0.524 Sum_probs=192.8
Q ss_pred EEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceee-CCceEEEEeccCe-EEeeEEEEEEE
Q 012697 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK-NGKSADIHYGTGA-ISGFFSEDHVK 167 (458)
Q Consensus 90 Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~-~~~~~~i~Y~~Gs-~~G~~~~D~v~ 167 (458)
|+++|+||||||++.|+|||||+++||++..|. ...|..++.|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999996 33455677899999999987 4789999999997 89999999999
Q ss_pred eCceeeccceEEEEEecCCcccccccccccccCCCCcCcCC---CCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCcEE
Q 012697 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVG---KAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEI 244 (458)
Q Consensus 168 igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~---~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L 244 (458)
+|+..++++.||++.......+....++||||||++..+.. ...+++++|.+++. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887654455667899999999876542 35679999999865 89999999863 27999
Q ss_pred EECcccCCCCccceEEEeecC-ccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhc
Q 012697 245 VFGGMDPDHYKGEHTYVPVTQ-KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316 (458)
Q Consensus 245 ~fGgiD~s~~~g~l~~~pv~~-~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~ 316 (458)
+|||+|+++|.|+++|+|+.. .++|.|.+++|.|+++... ...+..++|||||+++++|.+++++|+++++
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCc
Confidence 999999999999999999976 7899999999999988443 3467889999999999999999999999994
No 14
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-42 Score=355.71 Aligned_cols=231 Identities=43% Similarity=0.753 Sum_probs=193.8
Q ss_pred ceEeeeeecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCC-CCC-ccCCCCCceeeCCce--------
Q 012697 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYF-HSK-YRSGRSSTYKKNGKS-------- 147 (458)
Q Consensus 78 ~~~pl~n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~-~~~-y~~~~SsT~~~~~~~-------- 147 (458)
...++..+.+.+|+++|+||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+...|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3456667778899999999999999999999999999999999962 6865 444 999999999987743
Q ss_pred ----------EEEEeccCe-EEeeEEEEEEEeCc---eeeccceEEEEEecCCccccc-ccccccccCCCCcCcCCCCCc
Q 012697 148 ----------ADIHYGTGA-ISGFFSEDHVKIGD---LVVKDQEFIEATREPSLTFLL-AKFDGILGLGFQEISVGKAVP 212 (458)
Q Consensus 148 ----------~~i~Y~~Gs-~~G~~~~D~v~igg---~~i~~~~Fg~~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~~~~ 212 (458)
|.+.|++|+ ++|.+++|+|++++ ..++++.|||+....+. +.. ..++||||||+...+.....+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 999999954 89999999999998 78888999999988765 444 678999999999988544333
Q ss_pred hHHHHHhCCCCCCCeEEEEecCCCCC-CCCcEEEECcccCCCCccceEEEeecCcc--ceEEEeeeEEEcCce----eee
Q 012697 213 VWYNMVNQGLVNEPVFSFWFNRNADE-EEGGEIVFGGMDPDHYKGEHTYVPVTQKG--YWQFDMGDVMIDGQT----TGF 285 (458)
Q Consensus 213 ~~~~L~~qg~I~~~~FSl~l~~~~~~-~~~G~L~fGgiD~s~~~g~l~~~pv~~~~--~w~v~l~~i~vg~~~----~~~ 285 (458)
..+.. .++||+||.+.... ..+|.|+||++|+.++.++++|+|+.... ||.+.+++|+|+++. ..+
T Consensus 192 ------~~~~~-~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 ------SFYNA-INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred ------cccCC-ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 32222 23899999987533 24899999999999999999999998877 999999999999843 222
Q ss_pred cCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 286 CAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 286 ~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
+.....+|+||||+++++|.++|++|.+++++.
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~ 297 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAE 297 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhh
Confidence 333688999999999999999999999999876
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.8e-41 Score=344.45 Aligned_cols=223 Identities=30% Similarity=0.500 Sum_probs=185.0
Q ss_pred ceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCeEEeeEEEEEEE
Q 012697 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (458)
Q Consensus 88 ~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~G~~~~D~v~ 167 (458)
..|+++|+||||+|++.|+|||||+++||++..|. ..++.|+|++|+||+..++.|++.|++|+++|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 46999999999999999999999999999998773 3467999999999999999999999999999999999999
Q ss_pred eCceeeccceE----EEEEecCCcccccccccccccCCCCcCcC--CCCCchHHHHHhCCCCCCCeEEEEecCCC-----
Q 012697 168 IGDLVVKDQEF----IEATREPSLTFLLAKFDGILGLGFQEISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNA----- 236 (458)
Q Consensus 168 igg~~i~~~~F----g~~~~~~~~~~~~~~~~GIlGLg~~~~s~--~~~~~~~~~L~~qg~I~~~~FSl~l~~~~----- 236 (458)
||+. .++.| +++....+.......++||||||++.++. ....|++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 23333 34433222111233679999999998764 2457899999999997 679999986421
Q ss_pred --CCCCCcEEEECcccCCCCccceEEEeecCccceEEEeeeEEEcCceeeecCC---CeeEEEccCCcCccccHHHHHHH
Q 012697 237 --DEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAG---GCAAIADSGTSLLAGPTTIITQV 311 (458)
Q Consensus 237 --~~~~~G~L~fGgiD~s~~~g~l~~~pv~~~~~w~v~l~~i~vg~~~~~~~~~---~~~aiiDTGTt~i~lP~~~~~~l 311 (458)
.....|.|+|||+|+++|.|++.|+|+....+|.|.+++|+|+++.+..... ...+||||||+++++|.+++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999987754321 24699999999999999999999
Q ss_pred HHHhcCc
Q 012697 312 NHAIGAT 318 (458)
Q Consensus 312 ~~~i~~~ 318 (458)
.+++++.
T Consensus 234 ~~~l~~~ 240 (364)
T cd05473 234 VDAIKAA 240 (364)
T ss_pred HHHHHhh
Confidence 9999765
No 16
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=340.30 Aligned_cols=216 Identities=24% Similarity=0.411 Sum_probs=176.2
Q ss_pred cCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccC--CCCCccCCCCCceeeCC------------------
Q 012697 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYRSGRSSTYKKNG------------------ 145 (458)
Q Consensus 86 ~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------------ 145 (458)
.+.+|+++|+||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4678999999999999999999999999999999996 676 35799999999998743
Q ss_pred --ceEEEEeccCe-EEeeEEEEEEEeCc-----eeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHH
Q 012697 146 --KSADIHYGTGA-ISGFFSEDHVKIGD-----LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNM 217 (458)
Q Consensus 146 --~~~~i~Y~~Gs-~~G~~~~D~v~igg-----~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L 217 (458)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.+|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999987 46889999999876542 32 257999999998776 56666
Q ss_pred HhCCCCCCCeEEEEecCCCC-CCCCcEEEECcccCCCCcc-ceEEEeecC---ccceEEEeeeEEEcCceeeecCC----
Q 012697 218 VNQGLVNEPVFSFWFNRNAD-EEEGGEIVFGGMDPDHYKG-EHTYVPVTQ---KGYWQFDMGDVMIDGQTTGFCAG---- 288 (458)
Q Consensus 218 ~~qg~I~~~~FSl~l~~~~~-~~~~G~L~fGgiD~s~~~g-~l~~~pv~~---~~~w~v~l~~i~vg~~~~~~~~~---- 288 (458)
..+ +. ++||+||.+..+ ....|.|+||+. +++.+ .+.|+|+.. ..+|.|.+++|+||++.+.++..
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 542 43 599999975332 234799999984 45544 488999964 46999999999999988764322
Q ss_pred --CeeEEEccCCcCccccHHHHHHHHHHhcC
Q 012697 289 --GCAAIADSGTSLLAGPTTIITQVNHAIGA 317 (458)
Q Consensus 289 --~~~aiiDTGTt~i~lP~~~~~~l~~~i~~ 317 (458)
...+||||||+++++|.++|++|.+++..
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~ 335 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEE 335 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHH
Confidence 24799999999999999999999888754
No 17
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7.5e-39 Score=312.99 Aligned_cols=227 Identities=47% Similarity=0.866 Sum_probs=199.9
Q ss_pred EEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCC--ccCCCCCceeeCCceEEEEeccCeEEeeEEEEEEE
Q 012697 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSK--YRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (458)
Q Consensus 90 Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~--y~~~~SsT~~~~~~~~~i~Y~~Gs~~G~~~~D~v~ 167 (458)
|+++|.||+|+|++.|++||||+++||+|..|. ...|..... |++..|+++....+.+.+.|++|+++|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999996 223333333 88999999999999999999999999999999999
Q ss_pred eCceeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCcEEEEC
Q 012697 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 247 (458)
Q Consensus 168 igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~fG 247 (458)
+++..++++.||++..... .+....++||||||++..+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998764 344567899999999987766678899999999999999999999985322348999999
Q ss_pred cccCCCCccceEEEeecC--ccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 248 GMDPDHYKGEHTYVPVTQ--KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 248 giD~s~~~g~l~~~pv~~--~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++|||||+++++|.+++++|++++++.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999987 78999999999999974222446789999999999999999999999999876
No 18
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.3e-39 Score=322.27 Aligned_cols=236 Identities=28% Similarity=0.417 Sum_probs=198.1
Q ss_pred ceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCC--CCCccCCCCCceeeC----------------CceEE
Q 012697 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYF--HSKYRSGRSSTYKKN----------------GKSAD 149 (458)
Q Consensus 88 ~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~--~~~y~~~~SsT~~~~----------------~~~~~ 149 (458)
..|+++|+||||+|++.|+|||||+++||+|..|. .|.. ++.|+|++|+|++.. .+.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999997 5643 578999999999863 56899
Q ss_pred EEeccCe-EEeeEEEEEEEeCceeec-------cceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCC
Q 012697 150 IHYGTGA-ISGFFSEDHVKIGDLVVK-------DQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQG 221 (458)
Q Consensus 150 i~Y~~Gs-~~G~~~~D~v~igg~~i~-------~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg 221 (458)
+.|++|+ +.|.+++|+|+||+..+. ++.|||+....+ .+.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999987653 467999887654 34455679999999987542 223444577887
Q ss_pred CCCC--CeEEEEecCCCCCCCCcEEEECcccCCCCc----------cceEEEeecCccceEEEeeeEEEcCce-eeecCC
Q 012697 222 LVNE--PVFSFWFNRNADEEEGGEIVFGGMDPDHYK----------GEHTYVPVTQKGYWQFDMGDVMIDGQT-TGFCAG 288 (458)
Q Consensus 222 ~I~~--~~FSl~l~~~~~~~~~G~L~fGgiD~s~~~----------g~l~~~pv~~~~~w~v~l~~i~vg~~~-~~~~~~ 288 (458)
.+.. ++||+||.+. .|.|+|||+|++++. +++.|+|+....+|.|.+++|+|+++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7755 9999999864 799999999999987 789999999889999999999999886 111345
Q ss_pred CeeEEEccCCcCccccHHHHHHHHHHhcCccccccccceeecccc-hhhhhhhcccc
Q 012697 289 GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYG-EEIINMLLAKD 344 (458)
Q Consensus 289 ~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~~~~~vpC~~~~~~fg-~~~i~v~~~~~ 344 (458)
...++|||||+++++|++++++|.++++ .+.+.|+ +..|+++++++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~~P----------~i~~~f~~g~~~~i~p~~y 277 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNFFP----------TITIIFENNLKIDWKPSSY 277 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhhcC----------cEEEEEcCCcEEEECHHHh
Confidence 6789999999999999999999999982 4677888 78899888877
No 19
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.8e-38 Score=313.24 Aligned_cols=192 Identities=32% Similarity=0.598 Sum_probs=170.0
Q ss_pred eEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccC-eEEeeEEEEEEE
Q 012697 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVK 167 (458)
Q Consensus 89 ~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~G-s~~G~~~~D~v~ 167 (458)
.|+++|+||||+|++.|++||||+++||+ .|++.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 59999999999999999999999999996 678899996 589999999999
Q ss_pred eCceeeccceEEEEEecCCcccccccccccccCCCCcCcC-----CCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCc
Q 012697 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV-----GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 242 (458)
Q Consensus 168 igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~-----~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G 242 (458)
+++..++++.||++... ...+||||||++..+. ...++++++|++||.|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~-------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANST-------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecC-------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 99999999999999873 2359999999988743 24457999999999999999999999753 2379
Q ss_pred EEEECcccCCCCccceEEEeecCc------cceEEEeeeEEEcCceee--ecCCCeeEEEccCCcCccccHHHHHHHHHH
Q 012697 243 EIVFGGMDPDHYKGEHTYVPVTQK------GYWQFDMGDVMIDGQTTG--FCAGGCAAIADSGTSLLAGPTTIITQVNHA 314 (458)
Q Consensus 243 ~L~fGgiD~s~~~g~l~~~pv~~~------~~w~v~l~~i~vg~~~~~--~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~ 314 (458)
.|+|||+|+++|.|++.|+|+... .+|.|.+++|++++.... .......++|||||+++++|.+++++|+++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234567899999999999999999999999
Q ss_pred hcCc
Q 012697 315 IGAT 318 (458)
Q Consensus 315 i~~~ 318 (458)
+++.
T Consensus 204 ~~~~ 207 (295)
T cd05474 204 LGAT 207 (295)
T ss_pred hCCE
Confidence 9876
No 20
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.8e-39 Score=318.16 Aligned_cols=191 Identities=26% Similarity=0.461 Sum_probs=162.2
Q ss_pred eEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCe-EEeeEEEEEEE
Q 012697 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (458)
Q Consensus 89 ~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs-~~G~~~~D~v~ 167 (458)
+|+++|.||||||++.|++||||+++||+|..| |.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976544 68999999998 58999999999
Q ss_pred eCce-eeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCcEEEE
Q 012697 168 IGDL-VVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246 (458)
Q Consensus 168 igg~-~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~f 246 (458)
||+. .++++.|||+...++. + ...+||||||++..+ +..++..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999998765 44555544 3689999998753 133899999
Q ss_pred CcccCCCCccceEEEeecCc----cceEEEeeeEEEcCceeeec---CCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 247 GGMDPDHYKGEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC---AGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 247 GgiD~s~~~g~l~~~pv~~~----~~w~v~l~~i~vg~~~~~~~---~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
||+|++ .|++.|+|+... .+|.|++++|+||++.+... .....++|||||+++++|.+++++|.+++++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~ 200 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAA 200 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHH
Confidence 999999 899999999753 69999999999999887542 23568999999999999999999999999754
No 21
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6.2e-35 Score=285.11 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=167.9
Q ss_pred eEEEEEEEcCCCcEEEEEEcCCCCceEEeCC-CCCCCcccCCCCCccCCCCCceeeCCceEEEEeccC-eEEeeEEEEEE
Q 012697 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSS-KCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHV 166 (458)
Q Consensus 89 ~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~-~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~G-s~~G~~~~D~v 166 (458)
+|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.+.|++| +++|.+++|+|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~v 61 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDIF 61 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEEE
Confidence 6999999999999999999999999999984 574 45 46899999966 58999999999
Q ss_pred EeCc----eeeccceEEEEEecCCcc-cccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCC
Q 012697 167 KIGD----LVVKDQEFIEATREPSLT-FLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEG 241 (458)
Q Consensus 167 ~igg----~~i~~~~Fg~~~~~~~~~-~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~ 241 (458)
+++. ..++++.|||+....+.. ......+||||||++..+ ++++|.+++.| +++||+||.+.. +
T Consensus 62 ~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~~----~ 130 (273)
T cd05475 62 SLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSNG----G 130 (273)
T ss_pred EEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCCC----C
Confidence 9953 577899999997654432 234567999999998655 88999999999 999999998732 6
Q ss_pred cEEEECcccCCCCccceEEEeecCc---cceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 242 GEIVFGGMDPDHYKGEHTYVPVTQK---GYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 242 G~L~fGgiD~s~~~g~l~~~pv~~~---~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
|.|+|| |..++.+++.|+|+.+. .+|.|++.+|+||++.. ......++|||||+++++|.++| +
T Consensus 131 g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y------~--- 197 (273)
T cd05475 131 GFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY------F--- 197 (273)
T ss_pred eEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc------c---
Confidence 899998 56677899999999764 79999999999999854 34567899999999999999876 1
Q ss_pred cccccccceeecccch----hhhhhhcccc
Q 012697 319 GIVSQECKAVVSQYGE----EIINMLLAKD 344 (458)
Q Consensus 319 ~~~~vpC~~~~~~fg~----~~i~v~~~~~ 344 (458)
| .+.+.|++ ..++|+++++
T Consensus 198 -----p--~i~~~f~~~~~~~~~~l~~~~y 220 (273)
T cd05475 198 -----K--PLTLKFGKGWRTRLLEIPPENY 220 (273)
T ss_pred -----c--cEEEEECCCCceeEEEeCCCce
Confidence 1 34556665 4677777665
No 22
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.4e-35 Score=286.73 Aligned_cols=199 Identities=25% Similarity=0.426 Sum_probs=170.9
Q ss_pred eEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCe-EEeeEEEEEEE
Q 012697 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (458)
Q Consensus 89 ~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs-~~G~~~~D~v~ 167 (458)
+|+++|+||||||++.|+|||||+++||+| |.|.+.|++|+ ++|.+++|+|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999964 56889999775 89999999999
Q ss_pred eCce--eeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCcEEE
Q 012697 168 IGDL--VVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIV 245 (458)
Q Consensus 168 igg~--~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~ 245 (458)
+++. .++++.|||+..... +....++||||||++..+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999998764 456678999999997654 667787776 89999998753233489999
Q ss_pred ECcccCCCCccceEEEeecC----ccceEEEeeeEEEcCceeee--------cCCCeeEEEccCCcCccccHHHHHHHHH
Q 012697 246 FGGMDPDHYKGEHTYVPVTQ----KGYWQFDMGDVMIDGQTTGF--------CAGGCAAIADSGTSLLAGPTTIITQVNH 313 (458)
Q Consensus 246 fGgiD~s~~~g~l~~~pv~~----~~~w~v~l~~i~vg~~~~~~--------~~~~~~aiiDTGTt~i~lP~~~~~~l~~ 313 (458)
|||+|++ +.+++.|+|+.. .++|.+++++|+|+++.+.+ ......++|||||+++++|.+++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~----- 195 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY----- 195 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc-----
Confidence 9999999 999999999975 57999999999999987642 23567899999999999999987
Q ss_pred HhcCccccccccceeecccc-hhhhhhhcccc
Q 012697 314 AIGATGIVSQECKAVVSQYG-EEIINMLLAKD 344 (458)
Q Consensus 314 ~i~~~~~~~vpC~~~~~~fg-~~~i~v~~~~~ 344 (458)
-.+.+.|+ +..+.++++++
T Consensus 196 ------------P~i~~~f~~~~~~~i~~~~y 215 (265)
T cd05476 196 ------------PDLTLHFDGGADLELPPENY 215 (265)
T ss_pred ------------CCEEEEECCCCEEEeCcccE
Confidence 24667888 88888888877
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=6.3e-32 Score=273.38 Aligned_cols=212 Identities=17% Similarity=0.235 Sum_probs=164.0
Q ss_pred EcCCCcE-EEEEEcCCCCceEEeCCC----------CCCCcccCCCCCccCCC------CCceeeCCceEEEE-eccCe-
Q 012697 96 IGTPPQN-FTVIFDTGSSNLWVPSSK----------CYFSIACYFHSKYRSGR------SSTYKKNGKSADIH-YGTGA- 156 (458)
Q Consensus 96 IGtP~Q~-~~v~lDTGSs~~WV~~~~----------C~~~~~C~~~~~y~~~~------SsT~~~~~~~~~i~-Y~~Gs- 156 (458)
+|||-.+ +.|++||||+++||+|.+ |. +..|..+..|++.+ ++......|.|... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 5788777 999999999999997764 43 45676666665442 12223334767654 77885
Q ss_pred EEeeEEEEEEEeCc--------eeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCCCCCCCeE
Q 012697 157 ISGFFSEDHVKIGD--------LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVF 228 (458)
Q Consensus 157 ~~G~~~~D~v~igg--------~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~F 228 (458)
..|.+++|+++|+. ..++++.|||+.......+ ...++||||||++.++ +..+|..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 78999999999963 3688999999977532222 3347999999999887 5567776655 47999
Q ss_pred EEEecCCCCCCCCcEEEECcccCCCCc------cceEEEeecCc----cceEEEeeeEEEcCceeeec--------CCCe
Q 012697 229 SFWFNRNADEEEGGEIVFGGMDPDHYK------GEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC--------AGGC 290 (458)
Q Consensus 229 Sl~l~~~~~~~~~G~L~fGgiD~s~~~------g~l~~~pv~~~----~~w~v~l~~i~vg~~~~~~~--------~~~~ 290 (458)
|+||.+.. ..+|.|+||+.++.++. +.+.|+|+... .||.|++++|+||++.+.++ .+..
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23799999999988774 78999999754 79999999999999877542 2345
Q ss_pred eEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 291 AAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 291 ~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
.+||||||++++||.++|++|.+++.+.
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~ 258 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKA 258 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHH
Confidence 7999999999999999999999998754
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.7e-22 Score=169.60 Aligned_cols=108 Identities=61% Similarity=0.925 Sum_probs=95.5
Q ss_pred EEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCc-cCCCCCceeeCCceEEEEeccCeEEeeEEEEEEEeCc
Q 012697 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKY-RSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGD 170 (458)
Q Consensus 92 ~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y-~~~~SsT~~~~~~~~~i~Y~~Gs~~G~~~~D~v~igg 170 (458)
++|.||||||++.|+|||||+++||++..|. ...|..+..| ++..|++++...+.|.+.|++|++.|.++.|+|+||+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 2334455666 9999999999999999999999999999999999999
Q ss_pred eeeccceEEEEEecCCcccccccccccccC
Q 012697 171 LVVKDQEFIEATREPSLTFLLAKFDGILGL 200 (458)
Q Consensus 171 ~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGL 200 (458)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999886654555678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.86 E-value=4e-21 Score=173.28 Aligned_cols=136 Identities=33% Similarity=0.556 Sum_probs=106.6
Q ss_pred EEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeC----------------------Cce
Q 012697 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKN----------------------GKS 147 (458)
Q Consensus 90 Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~----------------------~~~ 147 (458)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999976 3578888888888762 258
Q ss_pred EEEEeccCe-EEeeEEEEEEEeCc-----eeeccceEEEEEecCCcccccccccccccCCCCcCcCCCCCchHHHHHhCC
Q 012697 148 ADIHYGTGA-ISGFFSEDHVKIGD-----LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQG 221 (458)
Q Consensus 148 ~~i~Y~~Gs-~~G~~~~D~v~igg-----~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg 221 (458)
|.+.|++++ +.|.+++|+++++. ..+.++.|||+....+. ....+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 78999999999976 46788999999887643 2277999999999887 88899888
Q ss_pred CCCCCeEEEEecCCCCCCCCcEEEECc
Q 012697 222 LVNEPVFSFWFNRNADEEEGGEIVFGG 248 (458)
Q Consensus 222 ~I~~~~FSl~l~~~~~~~~~G~L~fGg 248 (458)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 58999999998 2233489999995
No 26
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=98.79 E-value=4.1e-09 Score=71.14 Aligned_cols=39 Identities=31% Similarity=0.659 Sum_probs=37.5
Q ss_pred CccchhhHHHHHHHHHHHhhhhhHHHHHHHHHhhcccCC
Q 012697 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLP 423 (458)
Q Consensus 385 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
|++|.+|+++++++++.|++|.|+++|.++++++|+++|
T Consensus 1 ~~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 1 GDECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CCcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 468999999999999999999999999999999999997
No 27
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=98.67 E-value=1.7e-08 Score=90.69 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=41.9
Q ss_pred ceEEEeeeEEEcCceeeecCC-------CeeEEEccCCcCccccHHHHHHHHHHhcCc
Q 012697 268 YWQFDMGDVMIDGQTTGFCAG-------GCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (458)
Q Consensus 268 ~w~v~l~~i~vg~~~~~~~~~-------~~~aiiDTGTt~i~lP~~~~~~l~~~i~~~ 318 (458)
+|.|++.+|+||++.+.++.. ...++|||||++++||+++|++|.+++.+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~ 58 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ 58 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH
Confidence 589999999999999876544 467999999999999999999999999654
No 28
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.05 E-value=1.2e-05 Score=64.99 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=65.3
Q ss_pred eEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCe-EEeeEEEEEEE
Q 012697 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (458)
Q Consensus 89 ~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs-~~G~~~~D~v~ 167 (458)
.|++++.|+ ++++.+++|||++.+|+...... .+. . . ........+...+|. .......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~---~-------~-~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLG---L-------P-LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcC---C-------C-ccCCCcEEEEecCCCccceEEEcceEE
Confidence 489999999 69999999999999999754221 111 0 0 112234556677777 34556689999
Q ss_pred eCceeeccceEEEEEecCCcccccccccccccCCC
Q 012697 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (458)
Q Consensus 168 igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (458)
+|+..++++.+........ ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999988887755321 4699999853
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.38 E-value=0.0012 Score=56.23 Aligned_cols=101 Identities=21% Similarity=0.351 Sum_probs=66.5
Q ss_pred EeeeeecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCeE-E
Q 012697 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI-S 158 (458)
Q Consensus 80 ~pl~n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~-~ 158 (458)
+++.-..++.|++++.|. ++++.+++|||++.+-+....-. .-..++. .......+.=..|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~------~~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ-------RLGLDLN------RLGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH-------HcCCCcc------cCCceEEEEeCCCcEEE
Confidence 456666688999999997 68999999999999988543210 0001111 012233334445654 3
Q ss_pred eeEEEEEEEeCceeeccceEEEEEecCCcccccccccccccCCC
Q 012697 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (458)
Q Consensus 159 G~~~~D~v~igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (458)
..+.-|.+++|+..+.|..+.+..... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 556889999999999999977664321 1279999963
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.76 E-value=0.0079 Score=47.58 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=53.7
Q ss_pred EEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCe-EEeeEEEEEEEeCc
Q 012697 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVKIGD 170 (458)
Q Consensus 92 ~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs-~~G~~~~D~v~igg 170 (458)
+++.|+ ++++++++|||++.+.+....+. ..+ .... .......+.-.+|. .......+.+++|+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~------~l~-~~~~------~~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK------KLG-LKPR------PKSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH------HcC-CCCc------CCceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 357777 68999999999998888543321 000 0110 01112333334454 33556666899999
Q ss_pred eeeccceEEEEEecCCcccccccccccccCC
Q 012697 171 LVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (458)
Q Consensus 171 ~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg 201 (458)
..+.+..|.+.. .....+||||+-
T Consensus 66 ~~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 988888876665 133458999974
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=96.60 E-value=0.02 Score=57.02 Aligned_cols=195 Identities=22% Similarity=0.249 Sum_probs=104.9
Q ss_pred EEEEEEEcCCC----cEEE-EEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceE--EEEeccCeEEeeEE
Q 012697 90 YFGEIGIGTPP----QNFT-VIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSA--DIHYGTGAISGFFS 162 (458)
Q Consensus 90 Y~~~i~IGtP~----Q~~~-v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~--~i~Y~~Gs~~G~~~ 162 (458)
-++.|+|=.|+ |++. |++||||.-+=|..+.-... -........+ .+... -..|++|..=|.+.
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~----l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr 94 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSS----LAGSLPQQTG-----GGAPLAECAQFASGYTWGSVR 94 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchh----hhccCCcccC-----CCcchhhhhhccCcccccceE
Confidence 35667775554 6664 99999999887765432100 0001111111 11111 24577777668899
Q ss_pred EEEEEeCceeeccceEEEEEecC-----------C---cccccccccccccCCCCcCcCC----------------CC--
Q 012697 163 EDHVKIGDLVVKDQEFIEATREP-----------S---LTFLLAKFDGILGLGFQEISVG----------------KA-- 210 (458)
Q Consensus 163 ~D~v~igg~~i~~~~Fg~~~~~~-----------~---~~~~~~~~~GIlGLg~~~~s~~----------------~~-- 210 (458)
+.+|+||+....+..+.+..+.. + .......++||||+|.-..... ..
T Consensus 95 ~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~s 174 (370)
T PF11925_consen 95 TADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGS 174 (370)
T ss_pred EEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCC
Confidence 99999999877777776664421 0 0112446799999987543210 00
Q ss_pred -CchHHHHHhCCCCCCCeEEEEecCC---------C---CCCCCcEEEECcccCCC--CccceEEEeecCccceEEEeee
Q 012697 211 -VPVWYNMVNQGLVNEPVFSFWFNRN---------A---DEEEGGEIVFGGMDPDH--YKGEHTYVPVTQKGYWQFDMGD 275 (458)
Q Consensus 211 -~~~~~~L~~qg~I~~~~FSl~l~~~---------~---~~~~~G~L~fGgiD~s~--~~g~l~~~pv~~~~~w~v~l~~ 275 (458)
++.--.+-+| +..|+..|-.+.+ + .....|.|+||==..+. ..+..+..+....++...
T Consensus 175 Ct~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt---- 248 (370)
T PF11925_consen 175 CTSTTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT---- 248 (370)
T ss_pred eecccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE----
Confidence 0111112222 4466665543332 1 22347999998211221 122244555555555332
Q ss_pred EEEcCceeeecCCCeeEEEccCCcCccccHH
Q 012697 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (458)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~ 306 (458)
..+|... ....||||+.-.++|..
T Consensus 249 -~~~G~t~------~~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 249 -TFNGQTY------SASFFDSGSNGYFFPDS 272 (370)
T ss_pred -EecCcee------eeeeEecCCceeeccCC
Confidence 3344433 23499999999998864
No 32
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=96.35 E-value=0.0045 Score=47.29 Aligned_cols=38 Identities=37% Similarity=0.748 Sum_probs=36.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhHHHHHHHHHhhcccCCC
Q 012697 387 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPS 424 (458)
Q Consensus 387 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
.|..|++++..+++.+.++.+++.|.+++.++|+.+|.
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~~ 39 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLPK 39 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCH
Confidence 69999999999999999999999999999999999993
No 33
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.56 E-value=0.071 Score=45.51 Aligned_cols=90 Identities=21% Similarity=0.267 Sum_probs=56.9
Q ss_pred CceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEE-EEeccCe--EEeeEEE
Q 012697 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD-IHYGTGA--ISGFFSE 163 (458)
Q Consensus 87 ~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~-i~Y~~Gs--~~G~~~~ 163 (458)
...+++++.|+ ++++.+++|||++..++...-+. .+.- .... ...+. ...+.|. ..|....
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lgl----~~~~-------~~~~~~~~~g~g~~~~~g~~~~ 77 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCGL----MRLI-------DKRFQGIAKGVGTQKILGRIHL 77 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcCC----cccc-------CcceEEEEecCCCcEEEeEEEE
Confidence 45689999998 69999999999999998543221 1110 0000 11121 1233232 4577778
Q ss_pred EEEEeCceeeccceEEEEEecCCcccccccccccccCC
Q 012697 164 DHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (458)
Q Consensus 164 D~v~igg~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg 201 (458)
+.+.+++...+ ..|.+... ...|+|||+-
T Consensus 78 ~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d 106 (124)
T cd05479 78 AQVKIGNLFLP-CSFTVLED--------DDVDFLIGLD 106 (124)
T ss_pred EEEEECCEEee-eEEEEECC--------CCcCEEecHH
Confidence 89999998765 56655432 2459999985
No 34
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=95.05 E-value=0.015 Score=54.25 Aligned_cols=88 Identities=23% Similarity=0.488 Sum_probs=67.4
Q ss_pred ccceeecccchhhhhhhccccCcccccccCCccccCCCcceecccccccccCCcCCCCCCCCccchhhHHHHHHHHHHHh
Q 012697 324 ECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLK 403 (458)
Q Consensus 324 pC~~~~~~fg~~~i~v~~~~~~~~~~c~~~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 403 (458)
.|......|+..+|+...+.+.|+.+|...++|.-... .....-++-.++.+|-.|.++++++...|+
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~------------~~~~~~~~~~~~~~C~~C~~~V~~~~~~l~ 145 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAG------------PVSEVFASQPAAGECELCRETVTEADTKLQ 145 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccc------------hhhhhhhhcccccccHHHHHHHHHHHHhcc
Confidence 68888889999999999999999999999999974111 111111122358899999999999999999
Q ss_pred h-hhhHHHHHHHHHhhcccCC
Q 012697 404 Q-NQTQERILNYVNELCDRLP 423 (458)
Q Consensus 404 ~-~~~~~~~~~~~~~~~~~~~ 423 (458)
+ +.++..+.....+.|-.+|
T Consensus 146 d~~~~k~~~~~~~~~~ck~l~ 166 (218)
T KOG1340|consen 146 DKPKTKGKIVSLLLKSCKSLP 166 (218)
T ss_pred cchhHHHHHHHHHHhhccCCc
Confidence 9 6677777777777774443
No 35
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=94.60 E-value=0.24 Score=45.47 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=64.9
Q ss_pred CcceEeeeeecCceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccC
Q 012697 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (458)
Q Consensus 76 ~~~~~pl~n~~~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~G 155 (458)
+...+.|....++-|.++..|- +|++..++|||-+.+-+....-. .-.++.+. .+.++.+.-.+|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccCC
Confidence 4457888888899999999998 79999999999999888654321 11233321 234555666778
Q ss_pred eEE-eeEEEEEEEeCceeeccceE
Q 012697 156 AIS-GFFSEDHVKIGDLVVKDQEF 178 (458)
Q Consensus 156 s~~-G~~~~D~v~igg~~i~~~~F 178 (458)
... -.+-.|.|.||+....|+.=
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A 180 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDA 180 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchh
Confidence 754 56888999999998887663
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.48 E-value=0.19 Score=40.16 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=46.5
Q ss_pred EEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCe---EEeeEEEEEE
Q 012697 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA---ISGFFSEDHV 166 (458)
Q Consensus 90 Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs---~~G~~~~D~v 166 (458)
|++++.|+ ++++.+++||||+..++....+. ....+. .......+.=.+|. ..|.+ .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57889998 69999999999999999654331 011100 11122333334444 35766 7899
Q ss_pred EeCceeeccceEEEEE
Q 012697 167 KIGDLVVKDQEFIEAT 182 (458)
Q Consensus 167 ~igg~~i~~~~Fg~~~ 182 (458)
++++... ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9998763 34554443
No 37
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=91.74 E-value=0.018 Score=37.50 Aligned_cols=33 Identities=55% Similarity=1.102 Sum_probs=30.6
Q ss_pred ccceeecccchhhhhhhccccCcccccccCCcc
Q 012697 324 ECKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 356 (458)
Q Consensus 324 pC~~~~~~fg~~~i~v~~~~~~~~~~c~~~g~c 356 (458)
.|+.+..+|+..+|++..+++.|+.+|...|+|
T Consensus 3 ~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 3 ECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 477888899999999999999999999999998
No 38
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=91.67 E-value=1.1 Score=35.51 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=46.7
Q ss_pred EEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCeEEeeE-EEE-EEEeCc
Q 012697 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFF-SED-HVKIGD 170 (458)
Q Consensus 93 ~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs~~G~~-~~D-~v~igg 170 (458)
.+.|. ++++.+++|||++.+-+....+. ... ...+...+.=.+|...-.+ ..+ .+.+|+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~--------~~~---------~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP--------KQE---------LSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh--------hcc---------CCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 45666 69999999999999999755432 000 1122333333333321111 123 699999
Q ss_pred eeeccceEEEEEecCCcccccccccccccCCC
Q 012697 171 LVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (458)
Q Consensus 171 ~~i~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (458)
....+ .|..... . .++|||+.+
T Consensus 63 ~~~~~-~~~v~~~--~-------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPN--C-------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcC--C-------CCcEechhh
Confidence 88875 3444322 1 278999854
No 39
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=87.64 E-value=0.26 Score=30.68 Aligned_cols=24 Identities=29% Similarity=0.062 Sum_probs=17.3
Q ss_pred eEEEeeeccccchhhhhhhccccc
Q 012697 30 LYRIGLKKRKFDLNNRVAARLDSK 53 (458)
Q Consensus 30 ~~~ipl~~~~~~~~~~~~~~~~~~ 53 (458)
++||||+|.++.++.+.+.+...+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999999999988776
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.04 E-value=1.3 Score=33.81 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=28.6
Q ss_pred CceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCC
Q 012697 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (458)
Q Consensus 87 ~~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C 121 (458)
...+++.+.|| ++.+..++|||++..+++.+.+
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 57899999999 5999999999999999875543
No 41
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=77.00 E-value=5.1 Score=33.94 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.1
Q ss_pred CccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHH
Q 012697 265 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (458)
Q Consensus 265 ~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (458)
..+++.+. ..|||+.+ .++||||++.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 34555555 45777643 699999999999999988776
No 42
>PF13650 Asp_protease_2: Aspartyl protease
Probab=76.34 E-value=3 Score=32.40 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=23.3
Q ss_pred EEEcCceeeecCCCeeEEEccCCcCccccHHHHHHH
Q 012697 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (458)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (458)
+.|||+. ..+++|||++.+.++.+.++++
T Consensus 3 v~vng~~-------~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKP-------VRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEE-------EEEEEcCCCCcEEECHHHHHHc
Confidence 4566654 3699999999999999988766
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=75.68 E-value=3.8 Score=32.96 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=23.8
Q ss_pred EEEEEEcCCCcEEEEEEcCCCCceEEeCCCC
Q 012697 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (458)
Q Consensus 91 ~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C 121 (458)
+.+|.|. ++++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5678888 5899999999999998875543
No 44
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=70.99 E-value=6.1 Score=30.02 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.0
Q ss_pred EEEcCceeeecCCCeeEEEccCCcCccccHHHHHHH
Q 012697 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (458)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (458)
+.+++..+ .+++|||++-.+++.+.++.|
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 45666554 499999999999999988887
No 45
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=68.78 E-value=4.1 Score=38.23 Aligned_cols=46 Identities=26% Similarity=0.599 Sum_probs=40.7
Q ss_pred CccchhhHHHHHHHHHHHhhhhhHHHHHHHHHhhcccCCCCCCcceEeCCc
Q 012697 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSR 435 (458)
Q Consensus 385 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 435 (458)
...|-.||.+++.++..+.++ +.+|++++...|.-+|..... +|..
T Consensus 36 ~~~C~lCe~~v~~i~~~~~~~--~~~i~~~l~~~Ckkl~~~~~~---~C~~ 81 (218)
T KOG1340|consen 36 AEVCELCELVVKRIQEYLDKN--QNELKEDLHAECKKLPKAIPF---ECLS 81 (218)
T ss_pred cchhHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHhcccchH---HHHH
Confidence 578999999999999999999 999999999999999977653 5653
No 46
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=67.83 E-value=6.5 Score=31.16 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=24.8
Q ss_pred EEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHH
Q 012697 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVN 312 (458)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~ 312 (458)
+.|||+.+ .+.+|||++.+.++.+.+..+-
T Consensus 5 ~~Ing~~i-------~~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 5 LLVNGKPL-------KFQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEECCEEE-------EEEEcCCcceEEeCHHHHHHhC
Confidence 56777765 5999999999999999887663
No 47
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.54 E-value=4.5 Score=32.78 Aligned_cols=19 Identities=21% Similarity=0.067 Sum_probs=7.9
Q ss_pred CcchhHHHHHHHHHHHHhh
Q 012697 3 MVFKSITAGFFLCLLLFPV 21 (458)
Q Consensus 3 M~~~~~~~~l~l~~~~~~~ 21 (458)
|+++.++++.+++++++++
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 5544444433333333333
No 48
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=63.60 E-value=11 Score=29.50 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=22.9
Q ss_pred EEEcCceeeecCCCeeEEEccCCcCccccHHHHHHH
Q 012697 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (458)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (458)
+.+|++. ..+++|||++.+.++.+..+.+
T Consensus 7 v~i~~~~-------~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQP-------VRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEE-------EEEEEECCCCcEEcCHHHHHHc
Confidence 4566554 4699999999999999877665
No 49
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=63.27 E-value=14 Score=31.56 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=43.2
Q ss_pred ceEEEEEEEcCCCcEEEEEEcCCCCceEEeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCe--EEeeEEEEE
Q 012697 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA--ISGFFSEDH 165 (458)
Q Consensus 88 ~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs--~~G~~~~D~ 165 (458)
..+|+++.|+ ++++.+++|||...+-+..+-+. .|+-....+. . .-...+|-|+ +-|.+..-.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~---r~gL~~lid~---------r-~~g~a~GvG~~~i~G~Ih~~~ 87 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAE---RCGLMRLIDK---------R-FAGVAKGVGTQKILGRIHSVQ 87 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHH---HTTGGGGEEG---------G-G-EE-------EEEEEEEEEE
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHH---HcCChhhccc---------c-ccccccCCCcCceeEEEEEEE
Confidence 4589999999 69999999999999888543211 3432222221 0 0122344454 579999999
Q ss_pred EEeCceeeccceEEEE
Q 012697 166 VKIGDLVVKDQEFIEA 181 (458)
Q Consensus 166 v~igg~~i~~~~Fg~~ 181 (458)
+.+|+..++ ..|-+.
T Consensus 88 l~ig~~~~~-~s~~Vl 102 (124)
T PF09668_consen 88 LKIGGLFFP-CSFTVL 102 (124)
T ss_dssp EEETTEEEE-EEEEEE
T ss_pred EEECCEEEE-EEEEEe
Confidence 999986654 444443
No 50
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=62.39 E-value=8.4 Score=30.26 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=24.0
Q ss_pred EEEcCceeeecCCCeeEEEccCCcCccccHHHHHHH
Q 012697 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (458)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (458)
+.+||+.+ .+++|||.+.+.++.+..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 45666654 589999999999999998876
No 51
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=61.22 E-value=12 Score=29.84 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=21.9
Q ss_pred EEEEcCCCcEEEEEEcCCCCceEEeCCCC
Q 012697 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (458)
Q Consensus 93 ~i~IGtP~Q~~~v~lDTGSs~~WV~~~~C 121 (458)
.+.|+ +|.+.+++|||++++-+.....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccccc
Confidence 45666 7999999999999999975443
No 52
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=55.68 E-value=13 Score=31.51 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=22.7
Q ss_pred EEEcCceeeecCCCeeEEEccCCcCccccHHHHHHH
Q 012697 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (458)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (458)
+.+||..+ .+++|||++.+.++.+..+++
T Consensus 21 ~~Ing~~~-------~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPV-------KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEE-------EEEEeCCCceEEeCHHHHHHc
Confidence 35666643 599999999999999987653
No 53
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=54.24 E-value=83 Score=27.08 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=24.3
Q ss_pred ceEEEEEEEcCCCcEEEEEEcCCCCceEEeC
Q 012697 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPS 118 (458)
Q Consensus 88 ~~Y~~~i~IGtP~Q~~~v~lDTGSs~~WV~~ 118 (458)
..-.+.+.|.+ ++..+++|+|++..++..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 34678888885 999999999999999854
No 54
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=48.37 E-value=35 Score=31.65 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=28.1
Q ss_pred ccceEEEeeeEEEcCceeeecCCCeeEEEccCCcCccccHHHHHHHH
Q 012697 266 KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVN 312 (458)
Q Consensus 266 ~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~ 312 (458)
.+++.++ ..|||+.+ ..++|||.|.+.++.+..+.+=
T Consensus 103 ~GHF~a~---~~VNGk~v-------~fLVDTGATsVal~~~dA~RlG 139 (215)
T COG3577 103 DGHFEAN---GRVNGKKV-------DFLVDTGATSVALNEEDARRLG 139 (215)
T ss_pred CCcEEEE---EEECCEEE-------EEEEecCcceeecCHHHHHHhC
Confidence 4555444 56888876 4899999999999998776653
No 55
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=47.17 E-value=25 Score=31.43 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.2
Q ss_pred EEEEEEcCCCcEEEEEEcCCCCceEEeCC
Q 012697 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSS 119 (458)
Q Consensus 91 ~~~i~IGtP~Q~~~v~lDTGSs~~WV~~~ 119 (458)
+..+.++.-+.++.++|||||...++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44445555579999999999999888654
No 56
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=45.74 E-value=5.3 Score=29.82 Aligned_cols=37 Identities=43% Similarity=0.955 Sum_probs=33.4
Q ss_pred ccccccceeecccchhhhhhhccccCcccccccCCcc
Q 012697 320 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 356 (458)
Q Consensus 320 ~~~vpC~~~~~~fg~~~i~v~~~~~~~~~~c~~~g~c 356 (458)
.|.-.|+.+...|+...|++..++..|+.+|...|+|
T Consensus 40 ~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 40 SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 5667799888899999999999999999999999998
No 57
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=44.85 E-value=18 Score=28.89 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=20.6
Q ss_pred EEEcCceeeecCCCeeEEEccCCcCccccHHHH
Q 012697 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTII 308 (458)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~ 308 (458)
+.+++..+ .++||||+..+.++.+.+
T Consensus 10 v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 10 VKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EeECCEEE-------EEEEecCCCcceeccccc
Confidence 55666654 599999999999998754
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=44.41 E-value=16 Score=30.13 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=18.7
Q ss_pred CeeEEEccCCcCcc-ccHHHHHHH
Q 012697 289 GCAAIADSGTSLLA-GPTTIITQV 311 (458)
Q Consensus 289 ~~~aiiDTGTt~i~-lP~~~~~~l 311 (458)
...+++|||.+... +|.++++++
T Consensus 16 ~v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 16 EVRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEEECCCCeEEecCHHHHHHc
Confidence 45799999999886 999877653
No 59
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=41.22 E-value=27 Score=27.97 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.3
Q ss_pred eeEEEccCCcCccccHHHHHHHH
Q 012697 290 CAAIADSGTSLLAGPTTIITQVN 312 (458)
Q Consensus 290 ~~aiiDTGTt~i~lP~~~~~~l~ 312 (458)
..+.+|||++...+|...+..+-
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 46899999999999999888775
No 60
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=39.29 E-value=1.8e+02 Score=23.28 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=17.9
Q ss_pred cEEEEEEcCCCCceEEeCCCCC
Q 012697 101 QNFTVIFDTGSSNLWVPSSKCY 122 (458)
Q Consensus 101 Q~~~v~lDTGSs~~WV~~~~C~ 122 (458)
....+++|||+...-+|...+.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 3568999999999999877653
No 61
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=37.79 E-value=37 Score=28.96 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=22.3
Q ss_pred EEEcCceeeecCCCeeEEEccCCcCccccHHHHHHH
Q 012697 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (458)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 311 (458)
+++||+.+ .|++|||+..+.++.+.++++
T Consensus 29 ~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 56777765 599999999999999988773
No 62
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.25 E-value=21 Score=30.28 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=19.0
Q ss_pred eEEEccCCc-CccccHHHHHHHHH
Q 012697 291 AAIADSGTS-LLAGPTTIITQVNH 313 (458)
Q Consensus 291 ~aiiDTGTt-~i~lP~~~~~~l~~ 313 (458)
..++|||.+ ++.+|.++++++..
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~~ 51 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLGL 51 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcCC
Confidence 358999999 99999998876643
No 63
>PF11938 DUF3456: TLR4 regulator and MIR-interacting MSAP; InterPro: IPR021852 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 182 to 356 amino acids in length.
Probab=37.08 E-value=52 Score=28.93 Aligned_cols=38 Identities=18% Similarity=0.583 Sum_probs=31.2
Q ss_pred ccchhhHHHHHHHHHHHhh---------------------------hhhHHHHHHHHHhhcccCC
Q 012697 386 AMCSTCEMAVVWMQNQLKQ---------------------------NQTQERILNYVNELCDRLP 423 (458)
Q Consensus 386 ~~c~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 423 (458)
.-|.+|..++..|+..|.+ ..++-++..+++++|+...
T Consensus 2 ~~C~~C~~l~~el~~~l~~~~~~~~v~~~~~r~d~~g~~~~~~~~y~~SE~~l~EvlE~vC~~~~ 66 (151)
T PF11938_consen 2 LKCSACRALVEELEHRLAKTDPKKFVDVGGFRLDPDGERKKKKIPYARSELRLVEVLENVCEKMK 66 (151)
T ss_pred CcchHHHHHHHHHHHHHHHhCCcCceeccccccccccccccccCccccchhHHHHHHHHHccCcc
Confidence 4699999999999987753 2467788999999999874
No 64
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=36.82 E-value=51 Score=29.20 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=35.1
Q ss_pred CCCccchhhHHHHHHHHHHHhhhhhHHHHHHHHHhhcc
Q 012697 383 FHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCD 420 (458)
Q Consensus 383 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (458)
.|+..|.+|...-..--.+.++..+.++|-+.|.+...
T Consensus 109 ~Hg~~C~vCl~ia~~a~~~~~~Gks~~eIR~~ID~kYk 146 (158)
T PF13798_consen 109 DHGTRCGVCLDIAVQAVQMYQEGKSPKEIRQYIDEKYK 146 (158)
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999998765
No 65
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=36.19 E-value=1.3e+02 Score=23.26 Aligned_cols=52 Identities=23% Similarity=0.447 Sum_probs=37.8
Q ss_pred CCCccchhhHHHHHHHHHHHhhhhhHHHHHHHHHhhcccCCCCCCcceEeCCc---------CCCCCcEEEEECCEEe
Q 012697 383 FHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSR---------LSSLPIVSFTIGGKIF 451 (458)
Q Consensus 383 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~---------~~~~p~~~~~~~~~~~ 451 (458)
+..+.|..|+.+...++..-++.. .......|+|+. +..+|++-|.-+|+..
T Consensus 24 f~~~~C~~C~~~~~~~~~~~~~~~-----------------~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 24 FYAPWCPPCKAFKPILEKLAKEYK-----------------DNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp EESTTSHHHHHHHHHHHHHHHHTT-----------------TTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred EeCCCCCccccccceecccccccc-----------------cccccchhhhhccchhhhccCCCCCCEEEEEECCcEE
Confidence 346789999999888877655522 134556677774 5689999999998765
No 66
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=35.51 E-value=1.1e+02 Score=25.00 Aligned_cols=51 Identities=10% Similarity=0.227 Sum_probs=35.5
Q ss_pred CCCccchhhHHHHHHHHHHHhhhhhHHHHHHHHHhhcccCCCCCCcceEeCC--------cCCCCCcEEEEECCEEe
Q 012697 383 FHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCS--------RLSSLPIVSFTIGGKIF 451 (458)
Q Consensus 383 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~--------~~~~~p~~~~~~~~~~~ 451 (458)
+..+-|..|+.+...+|+..++... .....|+++ .+..+|++-|.-+|+..
T Consensus 31 F~a~~c~~C~~l~~~l~~la~~~~~------------------v~f~~vd~~~~~l~~~~~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 31 FYEPGFPRCKILDSHLEELAAKYPE------------------TKFVKINAEKAFLVNYLDIKVLPTLLVYKNGELI 89 (113)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHCCC------------------cEEEEEEchhhHHHHhcCCCcCCEEEEEECCEEE
Confidence 5688999999999999877765421 111223332 35789999999898764
No 67
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=32.20 E-value=1.3e+02 Score=24.71 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=35.5
Q ss_pred CCCccchhhHHHHHHHHHHHhhhhhHHHHHHHHHhhcccCCCCCCcceEeC---------CcCCCCCcEEEEECCEEe
Q 012697 383 FHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDC---------SRLSSLPIVSFTIGGKIF 451 (458)
Q Consensus 383 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c---------~~~~~~p~~~~~~~~~~~ 451 (458)
+..+-|..|+.+-..+|+..++.. ....+.|+. -.+..+|++-|.-+|+.+
T Consensus 29 f~a~~c~~C~~~~p~l~~la~~~~------------------~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 29 FYHPEFFRCKIMDKHLEILAKKHL------------------ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred EECCCCccHHHHHHHHHHHHHHcC------------------CCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEE
Confidence 457899999999999988776532 112233333 345789999998888754
No 68
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=30.03 E-value=66 Score=26.79 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=29.4
Q ss_pred CCccchhhHHHHHHHHH---------HHhhhhhHHHHHHHHHhh
Q 012697 384 HDAMCSTCEMAVVWMQN---------QLKQNQTQERILNYVNEL 418 (458)
Q Consensus 384 ~~~~c~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 418 (458)
+-|-|..|..+.+||++ .+++..|.++|...++++
T Consensus 6 ~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~ 49 (113)
T cd03033 6 EKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDL 49 (113)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHc
Confidence 56889999999999996 567777999998888754
No 69
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=29.90 E-value=62 Score=26.59 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=39.7
Q ss_pred EEEEEcCCC----cEEEEEEcCCCCceE-EeCCCCCCCcccCCCCCccCCCCCceeeCCceEEEEeccCe-EEeeEEEEE
Q 012697 92 GEIGIGTPP----QNFTVIFDTGSSNLW-VPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDH 165 (458)
Q Consensus 92 ~~i~IGtP~----Q~~~v~lDTGSs~~W-V~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Y~~Gs-~~G~~~~D~ 165 (458)
+++.|..|. -++.+++|||.+..- ++...-. .-...+.. .....-++|+ +.-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 577888873 278899999999765 4422110 00111111 1234445675 456678899
Q ss_pred EEeCceee
Q 012697 166 VKIGDLVV 173 (458)
Q Consensus 166 v~igg~~i 173 (458)
+.++|...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 70
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=29.71 E-value=1.6e+02 Score=23.57 Aligned_cols=22 Identities=9% Similarity=-0.099 Sum_probs=17.9
Q ss_pred CCCccchhhHHHHHHHHHHHhh
Q 012697 383 FHDAMCSTCEMAVVWMQNQLKQ 404 (458)
Q Consensus 383 ~~~~~c~~~~~~~~~~~~~~~~ 404 (458)
+..+-|..|++.+..+++..++
T Consensus 22 F~a~wC~~C~~~~p~l~~la~~ 43 (103)
T cd02985 22 FALKHSGPSVKIYPTMVKLSRT 43 (103)
T ss_pred EECCCCHhHHHHhHHHHHHHHH
Confidence 5578899999999999876554
No 71
>PRK10853 putative reductase; Provisional
Probab=28.47 E-value=78 Score=26.59 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=28.5
Q ss_pred CCCccchhhHHHHHHHHH---------HHhhhhhHHHHHHHHHh
Q 012697 383 FHDAMCSTCEMAVVWMQN---------QLKQNQTQERILNYVNE 417 (458)
Q Consensus 383 ~~~~~c~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 417 (458)
.|-|-|..|..+..|||+ -+++..|+++|...+.+
T Consensus 5 y~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~ 48 (118)
T PRK10853 5 YGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDE 48 (118)
T ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHH
Confidence 367889999999999996 45666799998888764
No 72
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.92 E-value=75 Score=26.72 Aligned_cols=37 Identities=27% Similarity=0.655 Sum_probs=30.4
Q ss_pred CCCccchhhHHHHHHHHH---------HHhhhhhHHHHHHHHHhhc
Q 012697 383 FHDAMCSTCEMAVVWMQN---------QLKQNQTQERILNYVNELC 419 (458)
Q Consensus 383 ~~~~~c~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 419 (458)
.|-|-|..|+.+..|||+ -+++..|.+++.+.++..=
T Consensus 6 y~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 6 YGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred EeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 467889999999999998 4677778898888877643
No 73
>COG4714 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=24.79 E-value=65 Score=30.34 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=20.1
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhcc
Q 012697 1 MGMVFKSITAGFFLCLLLFPVVFST 25 (458)
Q Consensus 1 m~M~~~~~~~~l~l~~~~~~~~~a~ 25 (458)
|+|+.|+.+++.+..+++|.+..+.
T Consensus 1 ma~~f~~~il~~l~A~L~c~ss~~v 25 (303)
T COG4714 1 MAMGFRMKILIKLTALLLCGSSWHV 25 (303)
T ss_pred CCcchHHHHHHHHHHHHHhhHhhhh
Confidence 9999999998888887877665543
No 74
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=24.11 E-value=89 Score=25.58 Aligned_cols=34 Identities=26% Similarity=0.652 Sum_probs=23.1
Q ss_pred CccchhhHHHHHHHHHH---------HhhhhhHHHHHHHHHhh
Q 012697 385 DAMCSTCEMAVVWMQNQ---------LKQNQTQERILNYVNEL 418 (458)
Q Consensus 385 ~~~c~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 418 (458)
-+-|..|+.+..||++. ++...|++++.+.++..
T Consensus 3 ~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~ 45 (110)
T PF03960_consen 3 NPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKL 45 (110)
T ss_dssp -TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHh
Confidence 47899999999999985 45566888887766654
No 75
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=22.10 E-value=89 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=17.2
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhcc
Q 012697 1 MGMVFKSITAGFFLCLLLFPVVFST 25 (458)
Q Consensus 1 m~M~~~~~~~~l~l~~~~~~~~~a~ 25 (458)
|.|.+...+++++++++++++....
T Consensus 1 m~~~~~~~ll~~v~~l~~~pl~~~~ 25 (91)
T TIGR01165 1 MSMKKTIWLLAAVAALVVLPLLIYA 25 (91)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcc
Confidence 8888887776666666666665543
No 76
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=21.74 E-value=1.2e+02 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=27.7
Q ss_pred CCccchhhHHHHHHHHH---------HHhhhhhHHHHHHHHHh
Q 012697 384 HDAMCSTCEMAVVWMQN---------QLKQNQTQERILNYVNE 417 (458)
Q Consensus 384 ~~~~c~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 417 (458)
+-|-|..|..+..||++ .+++..|++++...+++
T Consensus 5 ~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 5 GIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 56889999999999986 35666788888888764
No 77
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=20.77 E-value=1e+02 Score=25.39 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=28.0
Q ss_pred CCCccchhhHHHHHHHHHH---------HhhhhhHHHHHHHHHhh
Q 012697 383 FHDAMCSTCEMAVVWMQNQ---------LKQNQTQERILNYVNEL 418 (458)
Q Consensus 383 ~~~~~c~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 418 (458)
.+-|-|..|..++.||++. ++...|++++...++..
T Consensus 4 y~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~ 48 (112)
T cd03034 4 YHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKL 48 (112)
T ss_pred EECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHc
Confidence 3568899999999999963 45566888887777654
No 78
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=20.34 E-value=92 Score=25.84 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=29.2
Q ss_pred CCCccchhhHHHHHHHHHH---------HhhhhhHHHHHHHHHhh
Q 012697 383 FHDAMCSTCEMAVVWMQNQ---------LKQNQTQERILNYVNEL 418 (458)
Q Consensus 383 ~~~~~c~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 418 (458)
.+-|-|..|..+..||++. ++...|.+++...++..
T Consensus 4 y~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 4 YHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKL 48 (114)
T ss_pred EECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHc
Confidence 3678899999999999863 45667899998888864
Done!