BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012698
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 215/375 (57%), Gaps = 28/375 (7%)
Query: 79 AGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY- 137
A R +++F E IVTCGG+CPGLN VIR I ++Y V +++G GY G
Sbjct: 85 AAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144
Query: 138 --SKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 195
S+ I L V +IH GGTILG+SRG D ++VD+++ G+N ++ +GGDGTQ+G
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRG 204
Query: 196 AAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIEN 241
A VI +E ++RG+ ++V G+PKTIDND+ A +AI AA+ EA S
Sbjct: 205 ALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANY 264
Query: 242 GIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVI 301
G+GVVKLMGR GFIA A + S + CL+PE+P E + +E+R + VI
Sbjct: 265 GVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPI---SEQEVMSLLERRFCHSRSCVI 321
Query: 302 VIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAI---NLKYI 358
++AEG GQD S DASGNK L D+G+ ++ K+K F + +K +KYI
Sbjct: 322 IVAEGFGQDWGRGS----GGYDASGNKKLIDIGVILTEKVK-AFLKANKSRYPDSTVKYI 376
Query: 359 DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQ 418
DP+YMIRA P +A+D ++C LA AVH A+AG TG + + + +P +
Sbjct: 377 DPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRV 436
Query: 419 VVITDRMWARVLSST 433
+ + ++W +V T
Sbjct: 437 LDLRGQLWRQVREIT 451
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V +YH GV ++ G+ GY G + N L V DI
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIYH--GV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPAQ--------------RAINAAHVEAESIENGIGVVKLMGRYCGF 255
G+P TIDNDIP AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TWVIEVMGRHAGD 175
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAG 308
IA+Y+ L + LIPE+ + + + I KR E G H +I++AEG G
Sbjct: 176 IALYSGLAG-GAETILIPEADYDMN------DVIARLKRGHERGKKHSIIIVAEGVG 225
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V +YH GV ++ G+ GY G + N L V DI
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIYH--GV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPAQ--------------RAINAAHVEAESIENGIGVVKLMGRYCGF 255
G+P TIDNDIP AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGD 175
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAG 308
IA+++ L + LIPE+ + + + I KR E G H +I++AEG G
Sbjct: 176 IALWSGLAG-GAETILIPEADYDMN------DVIARLKRGHERGKKHSIIIVAEGVG 225
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V +YH GV ++ G+ GY G + N L V DI
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIYH--GV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPAQ--------------RAINAAHVEAESIENGIGVVKLMGRYCGF 255
G+P TIDNDIP AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGD 175
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAG 308
IA+++ L + LIPE+ + + + I KR E G H +I++AEG G
Sbjct: 176 IALWSGLAG-GAETILIPEADYDMN------DVIARLKRGHERGKKHSIIIVAEGVG 225
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 110/238 (46%), Gaps = 41/238 (17%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N +R +V +YH ++ GI GY G S L V DI
Sbjct: 6 VLTSGGDSPGMNAAVRAVVRKAIYHDV---EVYGIYNGYAGLISGKIEKLELGSVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT L T+R K + +++ GI + +IGGDG+ GA + E
Sbjct: 63 RGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPAQ--------------RAINAAHVEAESIENGIGVVKLMGRYCGF 255
G+P TIDNDIP AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGD 175
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAGQ 309
IA++A L + LIPE+ + ++E I KR E G H +I++AEG G
Sbjct: 176 IALWAGLAG-GAESILIPEADY------DMHEIIARLKRGHERGKKHSIIIVAEGVGS 226
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 27/203 (13%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V + +++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 156 GGTILGTS-----RGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGT LG++ R + + +++++ RGI+ + +IGGDG+ GA + E +
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------MGF 118
Query: 211 AVAGIPKTIDNDIPAQR----AINAAHVEAESIE---------NGIGVVKLMGRYCGFIA 257
G+P TIDNDI A E+I+ I VV++MGRYCG +
Sbjct: 119 PCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLT 178
Query: 258 MYATLGSRDVDCCLIPESPFYLE 280
+ A + + ++PE F E
Sbjct: 179 LAAAIAG-GCEFVVVPEVEFSRE 200
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 136/338 (40%), Gaps = 83/338 (24%)
Query: 96 IVTCGGLCPGLNTVIRE-----IVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVN 150
I+T GG PG+N +R I GL ++ GI G+ G + + L + V
Sbjct: 6 ILTSGGDAPGMNAAVRAVTRVAIANGL-------EVFGIRYGFAGLVAGDIFPLESEDVA 58
Query: 151 DIHKRGGTILGTSR---GGHDTSKI--VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ 205
+ GT L ++R + ++ ++ ++ GI+ V +IGGDG+ GA ++ +
Sbjct: 59 HLINVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGAL----QLTR 114
Query: 206 RGLKVAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGR 251
G G+P TIDNDIP A AI+ A S + + +V +MGR
Sbjct: 115 HGFN--SIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASS-HHRVFIVNVMGR 171
Query: 252 YCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLK---ENG--HMVIVIAEG 306
CG IAM + D +IPE P+ + E I RLK E+G H ++V+AEG
Sbjct: 172 NCGDIAMRVGVAC-GADAIVIPERPYDV-------EEIANRLKQAQESGKDHGLVVVAEG 223
Query: 307 A-GQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIR 365
D L+ D N L +M R
Sbjct: 224 VMTADQFMAELKKYGDFDVRANVL-------------------------------GHMQR 252
Query: 366 AIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR 403
SD V + L AVH + G G VG NG+
Sbjct: 253 GGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENGK 290
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 22/208 (10%)
Query: 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKV 148
S ++ I+ GG PG + VI + + SK+ G GG G + I LT +
Sbjct: 70 SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESL 129
Query: 149 VNDIHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203
+N GG I+ + R +T +K + ++ +N + IIGGD + AA++ E
Sbjct: 130 INSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF 189
Query: 204 RQRGLKVAVAGIPKTIDNDIPA----------------QRAINAAHVEAESIENGIGVVK 247
++ G + V G+PKTID D+ I +A S + VK
Sbjct: 190 KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVK 249
Query: 248 LMGRYCGFIAMYATLGSRDVDCCLIPES 275
LMGR +A+ L + + C++ E
Sbjct: 250 LMGRSASHVALECALKTHP-NICIVSEE 276
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 43/252 (17%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK- 154
++T GG PG+N +R +V +Y K+ I GY G + +D+
Sbjct: 186 VMTSGGDSPGMNPFVRAVVRA--GIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGW 243
Query: 155 --RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGA----------- 196
GGT +GT+R K ++ D GI+ + + GGDG+ GA
Sbjct: 244 LVEGGTNIGTARCKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLI 303
Query: 197 --AVIYEEIRQRGLK----VAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIG------ 244
+ E+I Q+ + + G +IDND+ + A A + I I
Sbjct: 304 EELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATA 363
Query: 245 -------VVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF-YLEGEGGLYEFIEK-RLKE 295
+V++MGR+CG++ + A L + D LIPE P E + + + + K R +
Sbjct: 364 NSHSRAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIVGKHRARG 422
Query: 296 NGHMVIVIAEGA 307
++++AEGA
Sbjct: 423 KRKTIVIVAEGA 434
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 30/197 (15%)
Query: 156 GGTILGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR----GL 208
GG+ +GT+R D I + G + + ++GG + +++ R R L
Sbjct: 635 GGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGG---FEAFISLHQLERARINYPSL 691
Query: 209 KVAVAGIPKTIDNDIP-------AQRAINA-------AHVEAESIENGIGVVKLMGRYCG 254
++ + IP TI N++P + +N+ A + N + VV++ G G
Sbjct: 692 RIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSG 751
Query: 255 FIAMYATLGSRDVDCCLIPE---SPFYLEGE-GGLYE-FIEKRLKENGHMVIVIAEGAGQ 309
+IA +A L +PE S LE + L E F + K +I+ +E A +
Sbjct: 752 YIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILKSENASK 810
Query: 310 DLLAESLQSMNQQDASG 326
L E + ++ +ASG
Sbjct: 811 VLTTEVISTIIDDEASG 827
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 42/257 (16%)
Query: 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY--SKNTINLTPKVVNDI 152
++T GG PG+N +R +V H +G + + GY G K + + V
Sbjct: 9 AVMTSGGDSPGMNAAVRAVVRTGIH-FGCD-VFAVYEGYEGLLRGGKYLKKMAWEDVRGW 66
Query: 153 HKRGGTILGTSRG-----GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV-------IY 200
GGT++GT+R + ++ +GI+ + + GGDG+ GA + +
Sbjct: 67 LSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLV 126
Query: 201 EEIRQRGL----------KVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIG------ 244
+E+ G +++ G+ +IDND+ + A+ E I +
Sbjct: 127 DELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATA 186
Query: 245 -------VVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF-YLEGEGGLYEFIEK-RLKE 295
VV++MGR+CG++A+ A + + D IPE + + + L E ++ R K
Sbjct: 187 KSHSRAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQRHRSKG 245
Query: 296 NGHMVIVIAEGAGQDLL 312
+ I++AEGA D L
Sbjct: 246 RRNNTIIVAEGALDDQL 262
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 47/267 (17%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS--KNTINLTPKVVNDIH 153
++T GG G+N +R +V ++ +++ + GY+G + T + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVV--RVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMML 77
Query: 154 KRGGTILGTSRGG-----HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR---- 204
+ GGT++G++R + ++ RGI + +IGGDG+ GA E
Sbjct: 78 QLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLS 137
Query: 205 --QRGLKVA-----------VAGIPKTIDNDIPAQ--------------RAINAAHVEAE 237
Q+ K+ + G+ +IDND ++A A+
Sbjct: 138 DLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTAQ 197
Query: 238 SIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFI-EKRLKEN 296
S + V+++MGR+CG++A+ +L S D IPE P E L + E R + +
Sbjct: 198 SHQRTF-VLEVMGRHCGYLALVTSL-SCGADWVFIPECPPDDNWEDHLCRRLSETRTRGS 255
Query: 297 GHMVIVIAEGA----GQDLLAESLQSM 319
+I++AEGA G+ + +E ++ +
Sbjct: 256 RLNIIIVAEGAIDRNGKPITSEGVKDL 282
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 27/201 (13%)
Query: 75 HFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGY 133
H R P+ Y V+ ++ G G+N +R V GL +++L + G+
Sbjct: 390 HIRPPAPKSGSYTVA------VMNVGAPAAGMNAAVRSTVRIGLIQG---NRVLVVHDGF 440
Query: 134 RGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS--KIVDSIQDRGINQVYIIGGDG 191
G V +GG+ LG+ R S +I +I I + IIGG
Sbjct: 441 EGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFE 500
Query: 192 TQKGAAVIYEEIRQ-RGLKVAVAGIPKTIDNDIP-------AQRAINAAHVEAESIENG- 242
G + E +Q L + IP T+ N++P A A+N + I+
Sbjct: 501 AYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSA 560
Query: 243 ------IGVVKLMGRYCGFIA 257
+ +++ MG YCG++A
Sbjct: 561 AGTKRRVFIIETMGGYCGYLA 581
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 50/261 (19%)
Query: 95 CIVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTI--NLTPKVVND 151
I+T GG PG+N +R + G++ YG K+ GY G + L + V
Sbjct: 214 AIITSGGDAPGMNAAVRAVTRAGIF--YGC-KVYACYEGYTGLVKGGDMLKELQWQDVRG 270
Query: 152 IHKRGGTILGTSRGGHDTSK-----IVDSIQDRGINQVYIIGGDGTQKGAAV-------- 198
+ GGTI+GT+R + ++ GI+ + + GGDG+ GA +
Sbjct: 271 LLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPEL 330
Query: 199 ---------IYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIG----- 244
I +E + + + G+ +IDND+ + A+ E I +
Sbjct: 331 IKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDAT 390
Query: 245 --------VVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEK---RL 293
VV++MGR+CG++ + + + + D IPE P E + ++K R
Sbjct: 391 AASHSRAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERP---PSESNWKDDLKKVCLRH 446
Query: 294 KENGH--MVIVIAEGAGQDLL 312
+E G +++AEGA D L
Sbjct: 447 REKGRRKTTVIVAEGAIDDQL 467
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 27/229 (11%)
Query: 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTI-NLTPK 147
S ++ I+ G LN R V L + ++ I G+ G + L
Sbjct: 596 SSRLNIAIIHVGAPTSALNPATR--VATLNSLAKGHRVFAIRNGFAGLIRHGAVRELNWI 653
Query: 148 VVNDIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ 205
V D H GG+ +GT+R D + Q + + IIGG + +YE
Sbjct: 654 DVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGG---FEAFTALYELDAA 710
Query: 206 RG----LKVAVAGIPKTIDNDIPAQRA--------------INAAHVEAESIENGIGVVK 247
R + + +P T+ N++P +A A + VV+
Sbjct: 711 RAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVVE 770
Query: 248 LMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 296
+ G Y G++A YA L + + PE+P L+ E + + +E+
Sbjct: 771 VQGGYSGYLASYAGLITGAL-AVYTPENPINLQTVQEDIELLTRTYEED 818
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 53/258 (20%)
Query: 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIH- 153
++T GG PG+N+ +R IV ++ + + GY G + P+ + + H
Sbjct: 7 AVMTSGGDAPGMNSNVRAIVRSA--IFKGCRAFVVMEGYEGL-----VRGGPEYIKEFHW 59
Query: 154 -------KRGGTILGTSRGGHDTSKI-----VDSIQDRGINQVYIIGGDGTQKGAAV--- 198
GGT +GT+R + + + G++ + + GGDG+ GA +
Sbjct: 60 EDVRGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRS 119
Query: 199 --------------IYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIG 244
I E +R + + G +IDND+ A A+ + I I
Sbjct: 120 EWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAID 179
Query: 245 -------------VVKLMGRYCGFIAMYATLGSRDVDCCLIPESP-FYLEGEGGLYEFIE 290
VV++MGR CG++A+ A + + D IPE P E + + + +
Sbjct: 180 YVEATANSHSRAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVS 238
Query: 291 K-RLKENGHMVIVIAEGA 307
K R + ++V+AEGA
Sbjct: 239 KHRSRGKRTTIVVVAEGA 256
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 131/326 (40%), Gaps = 49/326 (15%)
Query: 105 GLNTVIREIVCGLY-----HMYGVSKIL----GIDGGYRGFYSKNTINLTPKVVNDIHKR 155
G+ VI CG+ H + K+ GI G + ++ + IH
Sbjct: 13 GVTAVINASACGVIQTARKHPDQIGKVYAGRNGIIGALKEELIDTSLESDDAIQALIHTP 72
Query: 156 GGT-------ILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGL 208
GG + S + ++++ + I + GG +Q A + + + G
Sbjct: 73 GGAFGSCRYKLKNISENQREYERLIEVFRAHDIGYFFYNGGGDSQDTAYKVSQLADRMGY 132
Query: 209 KVAVAGIPKTIDNDIP----------AQRAINAAHVEAE-------SIENGIGVVKLMGR 251
+ G+PKT+DND+P + I + +EA + ++++MGR
Sbjct: 133 PITCIGVPKTVDNDLPFTDCCPGFGSVAKYIATSTLEASLDIKSMCETSTKVFILEVMGR 192
Query: 252 YCGFIAMYATLGSRDV----DCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGA 307
+ G+IA L + L PE PF E E +++ +++ G+ V+V +EGA
Sbjct: 193 HAGWIAAAGGLAGQSEGEPPHVILFPEIPFNRE---KFLERVDQCVRDYGYCVVVASEGA 249
Query: 308 GQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAI 367
Q + +DA G+ L V +++ +K + A+ Y+ RA
Sbjct: 250 -QYEDGRFVADAGAKDAFGHTQLGGVAPALANMVKQALGHKYHWAV------ADYLQRAA 302
Query: 368 P--SNASDNVYCTLLAQSAVHGAVAG 391
++A+D + ++AV A+AG
Sbjct: 303 RHIASATDVEQAYAVGKAAVEMALAG 328
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 215 IPKTIDNDIP----------AQRAINAAHVEA-------ESIENGIGVVKLMGRYCGFIA 257
+PKT+DND+P + I + +EA + + V+++MGR+ G+IA
Sbjct: 139 VPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIA 198
Query: 258 MYATLGS---RDVDCC-LIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLA 313
L S R++ L PE F + ++ +K+ G+ +V++EG D
Sbjct: 199 AAGGLASSPEREIPVVILFPEISF---DKQKFLAKVDSCVKKFGYCSVVVSEGVKGD-DG 254
Query: 314 ESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNAS- 372
+ L +DA G+ L V ++ +K+ + + Y+ RA AS
Sbjct: 255 KFLSDQGVRDAFGHAQLGGVAPVVASMVKEGLGLKYHWGV------ADYLQRAARHIASK 308
Query: 373 -DNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFN-RINERQ-NQVVITDRM 425
D + Q+AV AV G+ +V P R + P+ ++ Q +QV ++M
Sbjct: 309 TDVEQAYAMGQAAVEFAVQGHN--SVMPTIERISARPYQWKVGMAQLSQVANVEKM 362
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQ 226
HD DS+ DR ++Q+ + G A+ + E+ L+ +G T+ DIP Q
Sbjct: 492 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQ 551
Query: 227 RAINAAHVEAESIENGIGVVKLMG---RYC-----GFIAMYATLGSRDVDCCLIPESPFY 278
+ ++KL +C I + LG V L E P Y
Sbjct: 552 ---------IRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKAL--EHPLY 600
Query: 279 LEGEGGL 285
LE GL
Sbjct: 601 LEEISGL 607
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQ 226
HD DS+ DR ++Q+ + G A+ + E+ L+ +G T+ DIP Q
Sbjct: 491 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQ 550
Query: 227 RAINAAHVEAESIENGIGVVKLMG---RYC-----GFIAMYATLGSRDVDCCLIPESPFY 278
+ ++KL +C I + LG V L E P Y
Sbjct: 551 ---------IRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKAL--EHPLY 599
Query: 279 LEGEGGL 285
LE GL
Sbjct: 600 LEEISGL 606
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQ 226
HD DS+ DR ++Q+ + G A+ + E+ L+ +G T+ DIP Q
Sbjct: 491 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQ 550
Query: 227 RAINAAHVEAESIENGIGVVKLMG---RYC-----GFIAMYATLGSRDVDCCLIPESPFY 278
+ ++KL +C I + LG V L E P Y
Sbjct: 551 ---------IRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKAL--EHPLY 599
Query: 279 LEGEGGL 285
LE GL
Sbjct: 600 LEEISGL 606
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQ 226
HD DS+ DR ++Q+ + G A+ + E+ L+ +G T+ DIP Q
Sbjct: 492 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQ 551
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQ 226
HD DS+ DR ++Q+ + G A+ + E+ L+ +G T+ DIP Q
Sbjct: 199 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQ 258
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQ 226
HD DS+ DR ++Q+ + G A+ + E+ L+ +G T+ DIP Q
Sbjct: 203 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQ 262
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 19/127 (14%)
Query: 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQ 226
HD DS+ DR ++Q + G A+ + E+ L+ +G T+ DIP Q
Sbjct: 199 HDVVAPTDSLTDRTLDQXSTVTRPGVAXXASSLAVELXTSLLQTKYSGSETTVLGDIPHQ 258
Query: 227 RAINAAHVEAESIENGIGVVKLMG---RYC-----GFIAMYATLGSRDVDCCLIPESPFY 278
+ ++KL +C I + LG V L E P Y
Sbjct: 259 ---------IRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKAL--EHPLY 307
Query: 279 LEGEGGL 285
LE GL
Sbjct: 308 LEEISGL 314
>pdb|1NEC|A Chain A, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|B Chain B, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|C Chain C, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|D Chain D, Nitroreductase From Enterobacter Cloacae
Length = 216
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 283 GGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIK 342
G Y F E+++ + H+V+ A+ A D E + ++Q++A G + +HK +
Sbjct: 64 AGTYVFNERKMLDASHVVVFCAKTAMDDAWLERV--VDQEEADGRFNTPEAKA-ANHKGR 120
Query: 343 DHFARLHKMAINLKYIDPTYMIRAI 367
+FA +H+ ++LK D +M + +
Sbjct: 121 TYFADMHR--VDLKD-DDQWMAKQV 142
>pdb|1KQB|A Chain A, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|B Chain B, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|C Chain C, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|D Chain D, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQC|A Chain A, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|B Chain B, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|C Chain C, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|D Chain D, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQD|A Chain A, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|B Chain B, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|C Chain C, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|D Chain D, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
Length = 217
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 283 GGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIK 342
G Y F E+++ + H+V+ A+ A D E + ++Q++A G + +HK +
Sbjct: 65 AGTYVFNERKMLDASHVVVFCAKTAMDDAWLERV--VDQEEADGRFNTPEAKA-ANHKGR 121
Query: 343 DHFARLHKMAINLKYIDPTYMIRAIPSN 370
+FA +H+ ++LK D +M + + N
Sbjct: 122 TYFADMHR--VDLKD-DDQWMAKQVYLN 146
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 277 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 332
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 333 PQSGAAVVHEIVRSFG 348
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 289 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 344
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 345 PQSGAAVVHEIVRSFG 360
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 321 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 376
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 377 PQSGAAVVHEIVRSFG 392
>pdb|2F6U|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Citrate
pdb|2F6U|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Citrate
pdb|2F6X|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Sn-G1p And Mpd
pdb|2F6X|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Sn-G1p And Mpd
Length = 234
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQR 227
+T +I+ ++ D G + V I GTQ V YE+ R KV+ G+P ++ P+
Sbjct: 21 NTDEIIKAVADSGTDAVMI---SGTQN---VTYEKARTLIEKVSQYGLPIVVEPSDPSNV 74
Query: 228 AINAAHVEAESIENGIGVVKLMGRYCGFIAMY 259
+ ++ ++ N + G++ ++ M+
Sbjct: 75 VYDVDYLFVPTVLNSADGDWITGKHAQWVRMH 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,266,635
Number of Sequences: 62578
Number of extensions: 628788
Number of successful extensions: 1634
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 42
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)