Query 012698
Match_columns 458
No_of_seqs 247 out of 1562
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 6E-112 1E-116 886.6 41.2 445 6-450 2-460 (484)
2 PRK06830 diphosphate--fructose 100.0 5E-103 1E-107 816.5 37.7 403 33-441 17-442 (443)
3 PTZ00286 6-phospho-1-fructokin 100.0 1E-102 3E-107 817.1 38.6 424 20-449 4-454 (459)
4 PLN02884 6-phosphofructokinase 100.0 1.1E-96 2E-101 763.9 37.4 360 73-439 35-411 (411)
5 PRK06555 pyrophosphate--fructo 100.0 9.3E-84 2E-88 662.8 36.0 336 92-437 4-400 (403)
6 TIGR02478 6PF1K_euk 6-phosphof 100.0 5.8E-80 1.3E-84 678.8 31.8 387 17-432 300-736 (745)
7 PRK14071 6-phosphofructokinase 100.0 1.4E-79 3.1E-84 629.4 32.3 318 91-429 4-351 (360)
8 PRK14072 6-phosphofructokinase 100.0 2E-79 4.3E-84 638.5 32.2 330 91-431 3-386 (416)
9 cd00764 Eukaryotic_PFK Phospho 100.0 1.8E-79 4E-84 672.2 31.3 383 17-432 303-736 (762)
10 TIGR02483 PFK_mixed phosphofru 100.0 6.6E-79 1.4E-83 616.6 31.4 302 93-413 1-324 (324)
11 cd00363 PFK Phosphofructokinas 100.0 5.3E-78 1.2E-82 613.9 33.1 311 92-429 1-336 (338)
12 cd00763 Bacterial_PFK Phosphof 100.0 1.6E-77 3.5E-82 604.5 32.1 288 92-422 1-308 (317)
13 TIGR02482 PFKA_ATP 6-phosphofr 100.0 5.5E-77 1.2E-81 596.5 30.9 280 93-412 1-300 (301)
14 PRK03202 6-phosphofructokinase 100.0 2E-76 4.4E-81 597.2 32.6 289 92-423 2-311 (320)
15 COG0205 PfkA 6-phosphofructoki 100.0 5.2E-74 1.1E-78 581.3 30.3 296 91-418 2-318 (347)
16 TIGR02477 PFKA_PPi diphosphate 100.0 1.4E-73 3.1E-78 608.1 35.0 327 89-416 65-475 (539)
17 TIGR02478 6PF1K_euk 6-phosphof 100.0 3.2E-73 6.9E-78 625.4 33.5 328 92-447 1-372 (745)
18 cd00764 Eukaryotic_PFK Phospho 100.0 4.3E-73 9.4E-78 622.0 33.7 329 90-446 2-374 (762)
19 PRK07085 diphosphate--fructose 100.0 8.9E-73 1.9E-77 603.1 32.6 379 26-416 10-484 (555)
20 cd00765 Pyrophosphate_PFK Phos 100.0 3.1E-72 6.8E-77 597.0 33.1 383 27-419 11-490 (550)
21 PLN03028 pyrophosphate--fructo 100.0 5.7E-71 1.2E-75 592.5 33.2 344 72-416 57-484 (610)
22 PLN02251 pyrophosphate-depende 100.0 1E-70 2.3E-75 586.5 33.0 379 27-417 37-503 (568)
23 PTZ00468 phosphofructokinase f 100.0 7.3E-68 1.6E-72 594.0 31.9 324 91-415 102-502 (1328)
24 PF00365 PFK: Phosphofructokin 100.0 1.3E-68 2.8E-73 532.7 23.0 261 92-390 1-282 (282)
25 PTZ00287 6-phosphofructokinase 100.0 3.6E-66 7.8E-71 583.9 34.7 324 90-414 176-572 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 2.2E-59 4.9E-64 528.9 29.9 320 90-414 835-1271(1419)
27 PTZ00468 phosphofructokinase f 100.0 2E-51 4.4E-56 461.7 29.7 321 91-416 675-1135(1328)
28 KOG2440 Pyrophosphate-dependen 100.0 3.5E-47 7.5E-52 406.2 4.3 454 3-456 24-552 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 4.7E-43 1E-47 374.6 17.8 335 19-390 292-662 (666)
30 PRK04761 ppnK inorganic polyph 93.1 0.16 3.4E-06 50.4 5.4 44 169-217 8-57 (246)
31 PF00532 Peripla_BP_1: Peripla 92.2 10 0.00022 37.7 17.1 162 93-301 3-185 (279)
32 cd06281 PBP1_LacI_like_5 Ligan 92.1 12 0.00025 36.0 17.2 127 93-260 1-143 (269)
33 PRK00561 ppnK inorganic polyph 91.2 0.3 6.6E-06 48.8 4.9 43 170-217 18-65 (259)
34 PRK04885 ppnK inorganic polyph 89.6 0.56 1.2E-05 47.0 5.2 46 169-217 17-69 (265)
35 PF01513 NAD_kinase: ATP-NAD k 88.9 0.24 5.1E-06 49.8 2.1 57 173-234 69-131 (285)
36 PRK14077 pnk inorganic polypho 87.5 0.86 1.9E-05 46.2 5.0 32 180-216 64-95 (287)
37 PRK03501 ppnK inorganic polyph 85.7 1.3 2.8E-05 44.4 5.1 32 181-217 40-72 (264)
38 PRK14075 pnk inorganic polypho 85.6 1.1 2.4E-05 44.5 4.6 30 180-217 41-70 (256)
39 COG3199 Predicted inorganic po 84.4 1.3 2.7E-05 45.9 4.4 51 167-223 87-137 (355)
40 PRK04539 ppnK inorganic polyph 81.9 1.3 2.7E-05 45.2 3.3 33 180-217 68-100 (296)
41 PRK02231 ppnK inorganic polyph 81.9 1.3 2.7E-05 44.7 3.3 32 180-216 42-73 (272)
42 cd01537 PBP1_Repressors_Sugar_ 81.5 45 0.00098 31.0 18.4 91 93-221 1-91 (264)
43 COG1609 PurR Transcriptional r 81.3 42 0.00091 34.4 14.3 157 92-295 59-233 (333)
44 PRK01911 ppnK inorganic polyph 81.3 1.4 3E-05 44.8 3.3 33 180-217 64-96 (292)
45 PRK02649 ppnK inorganic polyph 81.3 1.4 3E-05 45.1 3.3 32 180-216 68-99 (305)
46 PRK03378 ppnK inorganic polyph 81.2 1.5 3.3E-05 44.5 3.6 33 180-217 63-95 (292)
47 TIGR01917 gly_red_sel_B glycin 81.0 2.9 6.4E-05 44.4 5.7 120 90-215 222-370 (431)
48 PRK13055 putative lipid kinase 80.8 7.2 0.00016 40.1 8.5 55 167-224 46-100 (334)
49 TIGR03702 lip_kinase_YegS lipi 80.7 9.8 0.00021 38.2 9.3 84 162-250 34-126 (293)
50 PRK03372 ppnK inorganic polyph 79.9 1.6 3.5E-05 44.6 3.3 33 180-217 72-104 (306)
51 PRK13054 lipid kinase; Reviewe 79.5 12 0.00026 37.6 9.5 81 166-251 42-131 (300)
52 PRK13337 putative lipid kinase 78.7 9.1 0.0002 38.6 8.3 82 166-253 43-132 (304)
53 PLN02935 Bifunctional NADH kin 78.4 1.8 3.9E-05 47.1 3.3 32 180-216 262-293 (508)
54 cd08180 PDD 1,3-propanediol de 78.2 4.4 9.6E-05 41.5 5.9 53 167-219 65-119 (332)
55 PRK03708 ppnK inorganic polyph 77.8 1.8 4E-05 43.5 3.0 33 179-217 56-88 (277)
56 COG1570 XseA Exonuclease VII, 77.5 14 0.00029 39.8 9.3 95 88-214 132-230 (440)
57 PLN02929 NADH kinase 77.1 1.6 3.5E-05 44.5 2.3 33 179-217 63-95 (301)
58 TIGR01918 various_sel_PB selen 76.9 5.8 0.00013 42.3 6.4 47 167-215 323-370 (431)
59 PRK10423 transcriptional repre 75.6 87 0.0019 30.9 19.3 70 91-193 56-125 (327)
60 PF00465 Fe-ADH: Iron-containi 75.4 3.5 7.5E-05 42.7 4.3 55 167-221 65-133 (366)
61 PLN02958 diacylglycerol kinase 74.4 17 0.00037 39.5 9.4 98 124-224 112-214 (481)
62 cd08173 Gro1PDH Sn-glycerol-1- 73.6 5.7 0.00012 40.8 5.4 51 167-222 65-115 (339)
63 PLN02727 NAD kinase 73.4 2.8 6.1E-05 48.6 3.2 33 180-217 743-775 (986)
64 PRK02155 ppnK NAD(+)/NADH kina 72.6 3.3 7.2E-05 42.0 3.2 33 180-217 63-95 (291)
65 cd08170 GlyDH Glycerol dehydro 71.6 6.9 0.00015 40.3 5.5 51 167-222 64-114 (351)
66 cd08177 MAR Maleylacetate redu 71.1 7.9 0.00017 39.8 5.7 48 167-219 64-111 (337)
67 PRK10014 DNA-binding transcrip 71.1 1.1E+02 0.0025 30.3 20.7 87 91-215 64-150 (342)
68 cd08172 GlyDH-like1 Glycerol d 70.8 7.8 0.00017 39.9 5.6 51 167-222 63-113 (347)
69 cd08189 Fe-ADH5 Iron-containin 70.3 8.9 0.00019 40.0 6.0 55 167-221 70-138 (374)
70 PRK00843 egsA NAD(P)-dependent 70.0 7.3 0.00016 40.3 5.2 51 167-222 74-124 (350)
71 PRK13059 putative lipid kinase 70.0 20 0.00044 36.0 8.3 70 176-251 52-129 (295)
72 cd08551 Fe-ADH iron-containing 69.8 9.3 0.0002 39.6 6.0 56 167-222 67-135 (370)
73 PRK13057 putative lipid kinase 69.2 13 0.00028 37.1 6.6 78 166-252 37-122 (287)
74 cd08194 Fe-ADH6 Iron-containin 68.9 9.5 0.00021 39.8 5.8 52 167-218 67-131 (375)
75 PRK14076 pnk inorganic polypho 68.9 4.1 9E-05 45.1 3.2 33 180-217 348-380 (569)
76 PRK11303 DNA-binding transcrip 68.3 1.3E+02 0.0028 29.8 18.9 67 92-191 62-128 (328)
77 cd08186 Fe-ADH8 Iron-containin 68.2 10 0.00023 39.6 5.9 52 167-218 71-136 (383)
78 cd07766 DHQ_Fe-ADH Dehydroquin 67.8 9 0.00019 39.0 5.3 52 167-221 65-116 (332)
79 cd08179 NADPH_BDH NADPH-depend 67.5 11 0.00024 39.3 6.0 52 167-218 68-135 (375)
80 PRK00861 putative lipid kinase 67.0 24 0.00052 35.4 8.1 79 166-252 43-129 (300)
81 TIGR02638 lactal_redase lactal 66.8 11 0.00024 39.4 5.7 53 167-219 73-140 (379)
82 cd06304 PBP1_BmpA_like Peripla 65.8 1.3E+02 0.0028 28.8 20.1 64 93-190 1-66 (260)
83 PRK09860 putative alcohol dehy 65.8 12 0.00027 39.2 5.9 53 167-219 75-140 (383)
84 cd08181 PPD-like 1,3-propanedi 65.7 13 0.00027 38.7 5.9 53 167-219 70-134 (357)
85 PRK15454 ethanol dehydrogenase 65.5 12 0.00026 39.5 5.8 52 167-218 93-157 (395)
86 cd06533 Glyco_transf_WecG_TagA 65.1 32 0.00069 31.9 7.9 92 91-194 46-139 (171)
87 cd08178 AAD_C C-terminal alcoh 65.0 14 0.00029 39.0 6.1 34 167-200 65-98 (398)
88 PRK01231 ppnK inorganic polyph 65.0 5.6 0.00012 40.4 3.1 33 180-217 62-94 (295)
89 PRK11914 diacylglycerol kinase 64.9 11 0.00024 37.9 5.2 54 166-224 50-103 (306)
90 PRK01185 ppnK inorganic polyph 64.3 5.6 0.00012 40.0 2.9 29 180-216 52-80 (271)
91 cd08193 HVD 5-hydroxyvalerate 64.3 13 0.00029 38.7 5.8 54 167-220 70-136 (376)
92 cd08185 Fe-ADH1 Iron-containin 63.9 13 0.00028 38.9 5.6 53 167-219 70-140 (380)
93 cd08176 LPO Lactadehyde:propan 63.9 13 0.00029 38.7 5.8 53 167-219 72-137 (377)
94 TIGR00147 lipid kinase, YegS/R 63.5 28 0.00062 34.6 7.8 74 171-252 48-131 (293)
95 PRK15138 aldehyde reductase; P 63.5 13 0.00028 39.1 5.6 52 167-218 72-139 (387)
96 cd08182 HEPD Hydroxyethylphosp 63.1 14 0.0003 38.4 5.7 55 167-221 64-135 (367)
97 PRK02645 ppnK inorganic polyph 62.9 6.6 0.00014 40.1 3.2 33 180-217 57-89 (305)
98 cd06320 PBP1_allose_binding Pe 62.3 1.5E+02 0.0032 28.3 17.1 92 93-219 1-92 (275)
99 COG1597 LCB5 Sphingosine kinas 61.9 26 0.00057 35.6 7.3 91 125-224 4-98 (301)
100 PF02601 Exonuc_VII_L: Exonucl 61.8 65 0.0014 32.7 10.2 103 89-223 12-122 (319)
101 PRK09423 gldA glycerol dehydro 61.4 14 0.00031 38.4 5.4 50 167-221 71-120 (366)
102 cd08550 GlyDH-like Glycerol_de 60.8 15 0.00032 37.9 5.4 51 167-222 64-114 (349)
103 cd08184 Fe-ADH3 Iron-containin 60.3 17 0.00037 37.7 5.7 53 167-219 65-133 (347)
104 cd06321 PBP1_ABC_sugar_binding 59.9 1.6E+02 0.0035 28.0 16.4 88 93-216 1-89 (271)
105 PRK10624 L-1,2-propanediol oxi 59.9 18 0.00038 37.9 5.8 53 167-219 74-141 (382)
106 TIGR01357 aroB 3-dehydroquinat 59.9 14 0.0003 38.0 5.0 50 167-219 65-117 (344)
107 COG0041 PurE Phosphoribosylcar 59.6 27 0.00058 32.4 6.1 27 159-185 8-34 (162)
108 cd06278 PBP1_LacI_like_2 Ligan 59.4 1.6E+02 0.0034 27.7 20.0 44 168-217 42-85 (266)
109 COG0206 FtsZ Cell division GTP 58.9 40 0.00087 35.1 8.0 205 89-308 9-232 (338)
110 cd01545 PBP1_SalR Ligand-bindi 57.9 1.7E+02 0.0037 27.6 13.5 46 168-218 44-89 (270)
111 cd08171 GlyDH-like2 Glycerol d 57.8 16 0.00035 37.6 5.0 48 167-219 65-112 (345)
112 PF00781 DAGK_cat: Diacylglyce 57.7 8.8 0.00019 33.5 2.7 53 169-224 42-97 (130)
113 PRK10703 DNA-binding transcrip 57.1 2.1E+02 0.0045 28.5 19.1 70 91-193 59-128 (341)
114 COG4981 Enoyl reductase domain 57.1 59 0.0013 36.0 9.0 94 171-273 112-218 (717)
115 cd08183 Fe-ADH2 Iron-containin 57.1 19 0.00042 37.5 5.5 52 167-218 62-130 (374)
116 COG0061 nadF NAD kinase [Coenz 56.9 9.7 0.00021 38.3 3.1 34 179-217 54-87 (281)
117 cd06315 PBP1_ABC_sugar_binding 56.4 85 0.0019 30.4 9.7 66 93-191 2-67 (280)
118 PF02645 DegV: Uncharacterised 56.4 56 0.0012 32.6 8.5 107 93-212 1-113 (280)
119 cd08187 BDH Butanol dehydrogen 55.3 22 0.00047 37.2 5.5 53 167-219 73-138 (382)
120 cd08188 Fe-ADH4 Iron-containin 55.2 26 0.00056 36.6 6.1 53 167-219 72-137 (377)
121 TIGR00288 conserved hypothetic 55.0 25 0.00055 32.7 5.3 53 166-221 88-143 (160)
122 COG2910 Putative NADH-flavin r 54.9 37 0.00081 32.7 6.4 94 92-195 1-111 (211)
123 PRK00002 aroB 3-dehydroquinate 54.6 19 0.00041 37.4 4.9 50 167-219 76-128 (358)
124 cd08192 Fe-ADH7 Iron-containin 54.6 25 0.00055 36.5 5.9 55 167-221 68-139 (370)
125 COG0371 GldA Glycerol dehydrog 54.3 20 0.00043 37.7 4.9 53 166-223 70-122 (360)
126 COG1454 EutG Alcohol dehydroge 54.1 26 0.00055 37.1 5.8 51 168-218 74-137 (377)
127 cd08195 DHQS Dehydroquinate sy 53.9 21 0.00045 36.8 5.1 50 167-219 69-121 (345)
128 cd08175 G1PDH Glycerol-1-phosp 53.9 18 0.00039 37.2 4.6 46 167-218 68-113 (348)
129 cd06297 PBP1_LacI_like_12 Liga 53.8 2.1E+02 0.0045 27.4 15.9 83 94-214 2-85 (269)
130 COG3155 ElbB Uncharacterized p 53.2 25 0.00055 32.9 4.9 21 175-195 80-100 (217)
131 TIGR03405 Phn_Fe-ADH phosphona 52.9 29 0.00063 36.0 6.0 52 167-218 65-135 (355)
132 cd08191 HHD 6-hydroxyhexanoate 52.9 28 0.0006 36.5 5.9 53 168-220 67-132 (386)
133 cd06299 PBP1_LacI_like_13 Liga 52.8 2E+02 0.0044 27.0 19.2 84 93-215 1-84 (265)
134 cd08549 G1PDH_related Glycerol 52.0 25 0.00054 36.1 5.2 50 167-222 68-117 (332)
135 PRK10355 xylF D-xylose transpo 51.9 1.5E+02 0.0033 30.0 10.9 92 90-219 24-116 (330)
136 TIGR00732 dprA DNA protecting 51.7 1.2E+02 0.0025 29.6 9.6 89 121-223 96-195 (220)
137 TIGR00237 xseA exodeoxyribonuc 51.4 1E+02 0.0022 33.1 9.9 54 171-224 177-235 (432)
138 PRK13111 trpA tryptophan synth 51.1 96 0.0021 30.9 9.1 73 168-251 105-177 (258)
139 PRK00286 xseA exodeoxyribonucl 50.6 85 0.0018 33.4 9.2 104 89-224 133-240 (438)
140 PRK12361 hypothetical protein; 50.4 32 0.00068 37.8 6.1 53 167-224 284-336 (547)
141 cd08174 G1PDH-like Glycerol-1- 50.4 27 0.0006 35.6 5.3 51 167-222 61-112 (331)
142 cd08199 EEVS 2-epi-5-epi-valio 49.7 26 0.00057 36.5 5.0 50 167-219 71-124 (354)
143 PRK05670 anthranilate synthase 49.6 28 0.0006 32.5 4.8 40 176-215 39-78 (189)
144 cd07995 TPK Thiamine pyrophosp 49.6 72 0.0016 30.4 7.7 91 95-192 1-102 (208)
145 cd01542 PBP1_TreR_like Ligand- 49.4 2.3E+02 0.0049 26.6 13.7 85 94-215 2-86 (259)
146 smart00046 DAGKc Diacylglycero 49.4 18 0.00039 31.6 3.2 42 180-224 49-93 (124)
147 TIGR01162 purE phosphoribosyla 49.0 29 0.00062 32.2 4.6 90 160-260 33-125 (156)
148 cd03822 GT1_ecORF704_like This 48.9 1.8E+02 0.0039 28.3 10.7 86 93-191 1-87 (366)
149 cd08190 HOT Hydroxyacid-oxoaci 48.8 33 0.00072 36.4 5.7 53 167-219 67-138 (414)
150 PF04263 TPK_catalytic: Thiami 47.7 1E+02 0.0022 27.2 7.7 53 139-192 42-96 (123)
151 TIGR00215 lpxB lipid-A-disacch 47.3 70 0.0015 33.4 7.8 90 93-191 7-100 (385)
152 PF07905 PucR: Purine cataboli 46.8 46 0.001 29.0 5.5 71 144-218 31-108 (123)
153 PF05036 SPOR: Sporulation rel 46.6 37 0.00081 25.9 4.4 50 160-209 9-71 (76)
154 PF04405 ScdA_N: Domain of Unk 46.2 21 0.00045 27.4 2.7 26 170-197 13-38 (56)
155 cd08196 DHQS-like1 Dehydroquin 46.1 35 0.00075 35.5 5.2 50 167-219 60-112 (346)
156 PF04392 ABC_sub_bind: ABC tra 46.0 2.4E+02 0.0052 28.0 11.2 73 93-194 1-73 (294)
157 TIGR01481 ccpA catabolite cont 46.0 3E+02 0.0066 27.1 20.3 85 92-215 60-144 (329)
158 cd06349 PBP1_ABC_ligand_bindin 45.9 1E+02 0.0022 30.7 8.6 108 103-218 115-225 (340)
159 PF10087 DUF2325: Uncharacteri 45.6 86 0.0019 26.0 6.7 35 226-264 61-95 (97)
160 PRK10586 putative oxidoreducta 45.4 28 0.00061 36.3 4.5 51 167-223 74-124 (362)
161 cd01575 PBP1_GntR Ligand-bindi 44.6 2.7E+02 0.0059 26.1 21.5 83 94-215 2-84 (268)
162 TIGR02417 fruct_sucro_rep D-fr 44.4 3.2E+02 0.007 26.9 19.3 67 92-191 61-127 (327)
163 TIGR02405 trehalos_R_Ecol treh 43.9 3.3E+02 0.0071 26.8 20.1 66 92-190 60-125 (311)
164 TIGR00566 trpG_papA glutamine 43.5 37 0.0008 31.8 4.6 42 174-215 37-78 (188)
165 PRK05637 anthranilate synthase 43.5 50 0.0011 31.7 5.6 42 174-215 38-79 (208)
166 PF13685 Fe-ADH_2: Iron-contai 43.1 20 0.00043 35.7 2.8 52 167-223 62-113 (250)
167 cd08169 DHQ-like Dehydroquinat 42.9 40 0.00086 34.9 5.1 50 167-219 67-119 (344)
168 PLN02834 3-dehydroquinate synt 42.5 45 0.00097 35.8 5.5 50 167-219 147-199 (433)
169 cd08197 DOIS 2-deoxy-scyllo-in 42.2 42 0.0009 35.0 5.1 50 167-219 68-120 (355)
170 cd06167 LabA_like LabA_like pr 42.0 45 0.00099 29.4 4.7 48 171-221 90-137 (149)
171 CHL00101 trpG anthranilate syn 41.9 36 0.00078 31.9 4.3 21 175-195 38-58 (190)
172 cd06292 PBP1_LacI_like_10 Liga 41.6 3.1E+02 0.0067 25.9 19.7 91 94-219 2-93 (273)
173 cd06274 PBP1_FruR Ligand bindi 40.9 3.2E+02 0.0068 25.8 17.5 43 167-215 42-84 (264)
174 PF01936 NYN: NYN domain; Int 40.5 37 0.00079 29.5 3.8 49 171-222 86-134 (146)
175 PRK03692 putative UDP-N-acetyl 40.3 91 0.002 30.9 6.9 86 91-189 105-191 (243)
176 COG1844 Uncharacterized protei 40.3 1.7E+02 0.0037 25.9 7.7 40 183-224 2-41 (125)
177 cd06282 PBP1_GntR_like_2 Ligan 39.9 2.6E+02 0.0056 26.2 10.0 80 94-209 2-81 (266)
178 PRK15395 methyl-galactoside AB 39.5 4.1E+02 0.0089 26.7 19.4 90 89-215 22-112 (330)
179 PLN02204 diacylglycerol kinase 38.7 42 0.0009 37.6 4.7 71 124-197 160-235 (601)
180 PRK06186 hypothetical protein; 38.0 40 0.00086 33.2 4.0 34 180-215 53-88 (229)
181 PF02401 LYTB: LytB protein; 37.8 81 0.0018 32.0 6.2 40 168-209 198-237 (281)
182 cd03409 Chelatase_Class_II Cla 37.8 2.2E+02 0.0048 23.1 8.5 77 95-203 3-87 (101)
183 PF04273 DUF442: Putative phos 37.3 1.7E+02 0.0038 25.2 7.5 87 170-260 17-106 (110)
184 PRK01045 ispH 4-hydroxy-3-meth 36.5 76 0.0016 32.5 5.8 41 168-210 199-239 (298)
185 cd06302 PBP1_LsrB_Quorum_Sensi 36.3 4.2E+02 0.0091 25.9 17.5 86 93-215 1-87 (298)
186 PF00731 AIRC: AIR carboxylase 36.2 31 0.00068 31.7 2.8 88 161-260 36-127 (150)
187 cd01536 PBP1_ABC_sugar_binding 36.1 3.6E+02 0.0078 25.0 20.2 87 93-216 1-87 (267)
188 PRK09492 treR trehalose repres 36.0 4.2E+02 0.0092 25.8 19.7 65 92-189 63-127 (315)
189 PRK06774 para-aminobenzoate sy 35.6 42 0.00092 31.4 3.7 41 175-215 38-78 (191)
190 cd01539 PBP1_GGBP Periplasmic 35.2 4.4E+02 0.0096 25.8 17.9 44 168-215 45-88 (303)
191 PRK13805 bifunctional acetalde 34.8 71 0.0015 37.3 6.0 33 168-200 527-559 (862)
192 cd06317 PBP1_ABC_sugar_binding 34.6 4E+02 0.0086 25.1 18.5 23 169-191 45-67 (275)
193 PF00289 CPSase_L_chain: Carba 34.0 63 0.0014 27.9 4.2 102 92-215 3-105 (110)
194 PF03808 Glyco_tran_WecB: Glyc 33.9 1.8E+02 0.0038 26.9 7.5 38 91-134 48-85 (172)
195 PLN02821 1-hydroxy-2-methyl-2- 33.7 81 0.0017 34.2 5.7 46 167-213 349-394 (460)
196 cd00537 MTHFR Methylenetetrahy 33.7 84 0.0018 31.1 5.6 88 125-216 30-137 (274)
197 PRK13951 bifunctional shikimat 33.1 64 0.0014 35.2 5.0 49 168-219 222-273 (488)
198 cd06275 PBP1_PurR Ligand-bindi 32.9 4E+02 0.0086 25.0 10.1 66 94-192 2-67 (269)
199 PRK06203 aroB 3-dehydroquinate 32.9 78 0.0017 33.5 5.5 48 168-218 96-146 (389)
200 TIGR03822 AblA_like_2 lysine-2 32.9 5.5E+02 0.012 26.2 13.7 153 96-252 140-310 (321)
201 cd06285 PBP1_LacI_like_7 Ligan 32.7 4.3E+02 0.0092 24.9 19.3 83 94-216 2-85 (265)
202 PLN02335 anthranilate synthase 32.2 66 0.0014 31.2 4.5 40 176-215 58-97 (222)
203 cd06296 PBP1_CatR_like Ligand- 31.6 4.4E+02 0.0096 24.7 20.3 45 168-218 43-87 (270)
204 PRK13371 4-hydroxy-3-methylbut 31.4 1E+02 0.0023 32.7 6.0 41 167-208 275-315 (387)
205 cd08198 DHQS-like2 Dehydroquin 31.0 94 0.002 32.7 5.6 48 168-218 84-134 (369)
206 PLN02948 phosphoribosylaminoim 30.9 85 0.0018 35.0 5.6 46 209-260 488-537 (577)
207 cd06313 PBP1_ABC_sugar_binding 30.4 4.9E+02 0.011 24.9 16.9 119 168-296 43-181 (272)
208 cd06312 PBP1_ABC_sugar_binding 30.2 4.8E+02 0.01 24.7 10.7 86 93-215 1-88 (271)
209 cd06342 PBP1_ABC_LIVBP_like Ty 30.0 3.5E+02 0.0077 26.5 9.5 103 105-216 117-223 (334)
210 PRK10727 DNA-binding transcrip 29.9 5.7E+02 0.012 25.4 18.9 68 91-191 59-126 (343)
211 cd08175 G1PDH Glycerol-1-phosp 29.7 4.7E+02 0.01 26.8 10.6 102 169-275 11-113 (348)
212 cd01829 SGNH_hydrolase_peri2 S 29.7 4.3E+02 0.0093 24.0 9.9 26 168-193 47-73 (200)
213 PF04208 MtrA: Tetrahydrometha 29.3 97 0.0021 29.3 4.7 89 154-250 39-133 (176)
214 TIGR00262 trpA tryptophan synt 29.2 3.5E+02 0.0075 26.8 9.1 49 168-218 103-151 (256)
215 TIGR00696 wecB_tagA_cpsF bacte 28.9 2E+02 0.0043 27.0 6.9 85 92-189 49-134 (177)
216 cd06335 PBP1_ABC_ligand_bindin 28.8 4.2E+02 0.0091 26.6 9.9 60 152-214 162-224 (347)
217 smart00481 POLIIIAc DNA polyme 28.8 2.1E+02 0.0046 21.7 6.0 50 168-219 16-65 (67)
218 KOG4180 Predicted kinase [Gene 28.6 30 0.00065 35.8 1.4 68 142-215 45-135 (395)
219 TIGR00676 fadh2 5,10-methylene 28.5 1.1E+02 0.0024 30.5 5.5 51 167-217 73-135 (272)
220 PRK12360 4-hydroxy-3-methylbut 28.2 1.1E+02 0.0024 31.1 5.3 40 168-209 198-237 (281)
221 cd04234 AAK_AK AAK_AK: Amino A 28.1 4.5E+02 0.0098 25.2 9.5 37 154-193 5-43 (227)
222 PRK10247 putative ABC transpor 27.9 1.1E+02 0.0024 29.0 5.2 60 246-306 136-197 (225)
223 PRK15404 leucine ABC transport 27.8 3.7E+02 0.008 27.6 9.4 63 150-215 183-248 (369)
224 cd06310 PBP1_ABC_sugar_binding 27.6 5.3E+02 0.011 24.3 18.7 44 168-215 45-88 (273)
225 TIGR00216 ispH_lytB (E)-4-hydr 27.6 1.6E+02 0.0034 29.9 6.4 41 167-209 196-236 (280)
226 PF07015 VirC1: VirC1 protein; 27.6 5.5E+02 0.012 25.4 9.9 102 188-293 11-134 (231)
227 PRK13609 diacylglycerol glucos 27.4 2.1E+02 0.0045 29.2 7.4 115 90-214 3-132 (380)
228 cd06294 PBP1_ycjW_transcriptio 27.4 5.2E+02 0.011 24.2 15.4 41 169-215 49-89 (270)
229 PLN02591 tryptophan synthase 27.0 3.8E+02 0.0082 26.6 8.9 48 168-218 94-142 (250)
230 PRK12767 carbamoyl phosphate s 26.9 4.9E+02 0.011 25.9 9.9 40 168-208 57-96 (326)
231 PRK11629 lolD lipoprotein tran 26.7 1.2E+02 0.0027 28.8 5.3 53 252-305 150-204 (233)
232 PF07755 DUF1611: Protein of u 26.6 4.7E+02 0.01 26.9 9.6 147 89-251 33-196 (301)
233 cd08197 DOIS 2-deoxy-scyllo-in 26.3 7.5E+02 0.016 25.7 11.8 105 169-275 11-119 (355)
234 PRK04155 chaperone protein Hch 26.3 7E+02 0.015 25.3 11.2 27 169-195 134-162 (287)
235 cd03238 ABC_UvrA The excision 26.2 1.2E+02 0.0026 28.2 5.0 57 246-304 86-146 (176)
236 cd06290 PBP1_LacI_like_9 Ligan 26.1 5.5E+02 0.012 24.1 18.7 65 94-192 2-67 (265)
237 TIGR03652 FeS_repair_RIC iron- 26.0 48 0.001 31.9 2.3 26 170-197 9-34 (216)
238 PRK10771 thiQ thiamine transpo 25.7 1.3E+02 0.0029 28.6 5.3 58 247-305 129-188 (232)
239 cd06287 PBP1_LacI_like_8 Ligan 25.4 6.1E+02 0.013 24.4 15.6 21 99-119 13-35 (269)
240 PF13528 Glyco_trans_1_3: Glyc 25.3 4.4E+02 0.0094 25.9 9.1 110 180-308 192-306 (318)
241 PRK08007 para-aminobenzoate sy 25.2 89 0.0019 29.3 3.9 42 174-215 37-78 (187)
242 PF00571 CBS: CBS domain CBS d 25.1 73 0.0016 22.9 2.7 29 167-195 16-44 (57)
243 PRK14987 gluconate operon tran 24.9 6.7E+02 0.015 24.7 19.9 66 92-190 64-129 (331)
244 cd06273 PBP1_GntR_like_1 This 24.8 5.8E+02 0.013 23.9 19.1 42 168-215 43-84 (268)
245 cd06268 PBP1_ABC_transporter_L 24.7 5.8E+02 0.012 23.8 9.6 63 153-218 160-225 (298)
246 cd01744 GATase1_CPSase Small c 24.4 1.4E+02 0.0031 27.5 5.1 38 176-215 35-75 (178)
247 cd06326 PBP1_STKc_like Type I 24.3 5.3E+02 0.011 25.3 9.6 105 104-218 118-226 (336)
248 PRK12815 carB carbamoyl phosph 24.2 3.4E+02 0.0074 32.7 9.3 105 91-215 7-118 (1068)
249 cd02201 FtsZ_type1 FtsZ is a G 24.1 7.5E+02 0.016 25.0 11.4 127 93-236 2-147 (304)
250 PF07287 DUF1446: Protein of u 24.1 1.7E+02 0.0036 30.9 5.9 110 160-275 50-169 (362)
251 cd06295 PBP1_CelR Ligand bindi 24.0 6.2E+02 0.013 23.9 11.5 42 170-217 54-95 (275)
252 PF04122 CW_binding_2: Putativ 23.9 1.2E+02 0.0025 24.8 4.0 38 156-195 50-87 (92)
253 cd06309 PBP1_YtfQ_like Peripla 23.9 5.3E+02 0.012 24.4 9.2 44 168-215 43-86 (273)
254 cd06288 PBP1_sucrose_transcrip 23.9 6E+02 0.013 23.7 18.2 23 169-191 45-67 (269)
255 TIGR00640 acid_CoA_mut_C methy 23.8 5E+02 0.011 23.0 8.2 87 90-190 1-92 (132)
256 cd01574 PBP1_LacI Ligand-bindi 23.7 6E+02 0.013 23.7 19.6 92 94-224 2-94 (264)
257 KOG1838 Alpha/beta hydrolase [ 23.7 4.4E+02 0.0095 28.3 9.0 101 94-221 126-233 (409)
258 cd06337 PBP1_ABC_ligand_bindin 23.6 2.1E+02 0.0046 29.0 6.6 65 152-219 172-239 (357)
259 PRK07649 para-aminobenzoate/an 23.6 89 0.0019 29.6 3.6 40 176-215 39-78 (195)
260 cd07093 ALDH_F8_HMSADH Human a 23.5 2.9E+02 0.0062 29.4 7.9 73 182-255 146-234 (455)
261 cd06307 PBP1_uncharacterized_s 23.4 6.4E+02 0.014 23.9 16.5 41 169-214 48-88 (275)
262 TIGR00677 fadh2_euk methylenet 23.4 1.7E+02 0.0036 29.5 5.7 50 167-216 74-138 (281)
263 PRK00843 egsA NAD(P)-dependent 23.4 7.4E+02 0.016 25.5 10.7 99 169-276 21-121 (350)
264 TIGR01244 conserved hypothetic 23.3 5.2E+02 0.011 22.8 8.7 87 171-263 18-109 (135)
265 COG0796 MurI Glutamate racemas 23.2 1.3E+02 0.0027 30.5 4.7 43 169-216 56-98 (269)
266 TIGR02810 agaZ_gatZ D-tagatose 23.1 7.2E+02 0.016 26.8 10.4 102 92-220 11-127 (420)
267 cd06318 PBP1_ABC_sugar_binding 22.7 6.6E+02 0.014 23.8 10.1 44 169-214 44-87 (282)
268 cd06347 PBP1_ABC_ligand_bindin 22.7 4.3E+02 0.0093 25.8 8.5 60 153-215 161-223 (334)
269 cd06353 PBP1_BmpA_Med_like Per 22.4 7.3E+02 0.016 24.2 10.0 89 92-218 121-209 (258)
270 PRK13293 F420-0--gamma-glutamy 22.4 2.4E+02 0.0052 28.2 6.3 59 241-308 90-153 (245)
271 PRK14462 ribosomal RNA large s 22.2 9.2E+02 0.02 25.3 11.1 151 95-258 163-349 (356)
272 cd07109 ALDH_AAS00426 Uncharac 21.9 4.2E+02 0.0091 28.2 8.7 28 182-209 146-173 (454)
273 cd02067 B12-binding B12 bindin 21.8 4.8E+02 0.01 21.9 7.6 26 168-193 66-92 (119)
274 cd06346 PBP1_ABC_ligand_bindin 21.7 6.1E+02 0.013 24.9 9.4 61 151-214 160-223 (312)
275 TIGR02673 FtsE cell division A 21.6 1.7E+02 0.0037 27.3 5.2 56 247-304 137-194 (214)
276 TIGR01769 GGGP geranylgeranylg 21.5 2.6E+02 0.0057 27.0 6.4 53 167-221 11-65 (205)
277 KOG1184 Thiamine pyrophosphate 21.5 6E+02 0.013 28.2 9.5 99 112-224 9-110 (561)
278 PRK10401 DNA-binding transcrip 21.4 8.1E+02 0.018 24.3 20.1 65 92-190 60-125 (346)
279 cd06277 PBP1_LacI_like_1 Ligan 21.3 5.3E+02 0.011 24.3 8.6 23 169-191 47-69 (268)
280 PRK01372 ddl D-alanine--D-alan 21.3 3.5E+02 0.0076 26.7 7.5 36 91-129 4-42 (304)
281 TIGR01752 flav_long flavodoxin 21.2 2.6E+02 0.0056 25.5 6.1 62 90-153 77-159 (167)
282 cd06311 PBP1_ABC_sugar_binding 20.9 7.1E+02 0.015 23.5 11.2 45 168-216 48-92 (274)
283 cd01743 GATase1_Anthranilate_S 20.9 1.1E+02 0.0025 28.1 3.7 18 178-195 40-57 (184)
284 TIGR02769 nickel_nikE nickel i 20.9 1.7E+02 0.0038 28.6 5.2 60 246-306 149-210 (265)
285 TIGR01916 F420_cofE F420-0:gam 20.9 3E+02 0.0064 27.5 6.6 59 240-307 88-151 (243)
286 TIGR02826 RNR_activ_nrdG3 anae 20.7 2.5E+02 0.0054 25.5 5.7 42 168-210 47-91 (147)
287 PRK14021 bifunctional shikimat 20.7 1.5E+02 0.0034 32.6 5.2 49 168-219 254-305 (542)
288 TIGR00253 RNA_bind_YhbY putati 20.5 5.3E+02 0.012 21.8 7.7 67 177-252 12-79 (95)
289 PRK09526 lacI lac repressor; R 20.4 8.3E+02 0.018 24.0 14.6 22 169-190 109-130 (342)
290 cd06329 PBP1_SBP_like_3 Peripl 20.2 3E+02 0.0065 27.6 6.9 63 151-216 166-234 (342)
291 PRK13789 phosphoribosylamine-- 20.2 5.3E+02 0.012 27.5 9.0 69 90-186 3-74 (426)
292 cd03250 ABCC_MRP_domain1 Domai 20.2 1.7E+02 0.0037 27.2 4.8 57 247-304 127-185 (204)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=5.8e-112 Score=886.57 Aligned_cols=445 Identities=87% Similarity=1.372 Sum_probs=417.0
Q ss_pred CCCceeecCCCCcccccccchhhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHhccCCCCcchhhhcCCCccc
Q 012698 6 NLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKV 85 (458)
Q Consensus 6 ~~~~~~~~~~~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~~~~~~f~~~~~~~~~ 85 (458)
..+.|+++++.++.+|.|+||.++.|+.|++++|+..|..++.....||++++.|+..+..++...++..|+++|||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~agpr~~i 81 (484)
T PLN02564 2 SSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTHFRRAGPRQKV 81 (484)
T ss_pred CCcCccccCCCceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCccceecCCcceE
Confidence 45789999999999999999999999999999999999999988899999999999887766555678899999999999
Q ss_pred ccCCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC
Q 012698 86 YFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG 165 (458)
Q Consensus 86 ~~~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~ 165 (458)
||+|+++|||||||||||||||+|||++|+.+...|++.+||||++||+||+++++++|+|++|++|+++|||+|||||+
T Consensus 82 ~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTsR~ 161 (484)
T PLN02564 82 YFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRG 161 (484)
T ss_pred EEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCceeccCCC
Confidence 99999999999999999999999999999988777787899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHH
Q 012698 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINA 231 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~ 231 (458)
++++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||+ ++++|++
T Consensus 162 ~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI~~ 241 (484)
T PLN02564 162 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 241 (484)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 5689999
Q ss_pred HHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCCcch
Q 012698 232 AHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDL 311 (458)
Q Consensus 232 i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vVvVaEGa~~~~ 311 (458)
+++||.|+++||||||+|||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++.+
T Consensus 242 i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVVAEGagq~~ 321 (484)
T PLN02564 242 AHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDL 321 (484)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEEeCCCccch
Confidence 99999999889999999999999999999999966999999999999998888999999999999999999999998877
Q ss_pred hHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012698 312 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 391 (458)
Q Consensus 312 ~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G 391 (458)
+.+.......+|++||++|++++.+|+++|+++++.+..+.+++|+++|||+|||++|+++|++||++||+.|||++++|
T Consensus 322 ~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG 401 (484)
T PLN02564 322 IAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAG 401 (484)
T ss_pred hhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 76544333568999999999999999999999985444556889999999999999999999999999999999999999
Q ss_pred CCceEEEEECCeEeeechhhhhhcCCccCccHHHHHHHHHhcCCCCCCChHHHHHhhhc
Q 012698 392 YTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKRE 450 (458)
Q Consensus 392 ~tg~mvgi~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~l~~tgqp~~~~~~~~~~~~~~ 450 (458)
+||+||+++|++++++||++++..+|+|++++.+|.+++++||||+|.++++....+++
T Consensus 402 ~tg~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~~~~~~~~~~ 460 (484)
T PLN02564 402 YTGFTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKRE 460 (484)
T ss_pred CCCEEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999998777654443
No 2
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=4.8e-103 Score=816.53 Aligned_cols=403 Identities=51% Similarity=0.851 Sum_probs=373.3
Q ss_pred CCCCcCCCCCCcccccccccccccchhHHHHHHhccC------CCCcchhhhcCCCcccccCCCceEEEEEccCCCCcch
Q 012698 33 LPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKD------SPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGL 106 (458)
Q Consensus 33 ~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~------~~~~~~f~~~~~~~~~~~~~~~~~iaIltsGG~apGm 106 (458)
-+.+++||..+...+... +||++++.|+..+..+.. ..+...|+++|||+++||+|+++||||+|||||||||
T Consensus 17 ~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~riaIvtsGG~~PGm 95 (443)
T PRK06830 17 ECKIPSPLIYSLAAGDTT-HFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGGLCPGL 95 (443)
T ss_pred CCCCCCcccccccccccc-eecCCCceEEEecccccccccccCccccchhhhcCCcceeEEcCcccEEEEECCCCCchHH
Confidence 466788898877776666 899999999887654322 1255789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEccccccccc---CCcccCChhHHhchhhcCccccccCCCcchHHHHHHHHHHcCCcE
Q 012698 107 NTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---KNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQ 183 (458)
Q Consensus 107 NavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~---~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i~~~l~~~~I~~ 183 (458)
|++||++++.+...|++.+||||++||+||++ +++++|+|++|++|+++|||+|||||+++++++++++|++++||+
T Consensus 96 N~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~~ 175 (443)
T PRK06830 96 NDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINI 175 (443)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCCCchhHHHHHHHHHHcCCCE
Confidence 99999999999877787899999999999998 899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHHHHHhhhcCCcEEEEEec
Q 012698 184 VYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLM 249 (458)
Q Consensus 184 LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i~~~A~s~~~rv~iVEvM 249 (458)
||+|||||||++|++|++++++++++|+||||||||||||+ ++++|+++++||.|+++||||||+|
T Consensus 176 L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvM 255 (443)
T PRK06830 176 LFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLM 255 (443)
T ss_pred EEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999 5688999999999998899999999
Q ss_pred CCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCCcchhHHHHhhhccccccCCcc
Q 012698 250 GRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKL 329 (458)
Q Consensus 250 GR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~ 329 (458)
||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++.+... ...+|++||++
T Consensus 256 GR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~l~~~----~~~~Da~gn~~ 331 (443)
T PRK06830 256 GRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDD----TGETDASGNPK 331 (443)
T ss_pred CCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCCceEEEEecCcccccccc----cccccccCCcc
Confidence 99999999999999867999999999999999989999999999999999999999998766532 24589999999
Q ss_pred ccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCeEeeech
Q 012698 330 LQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPF 409 (458)
Q Consensus 330 l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mvgi~~~~~~~vPl 409 (458)
+++++.+|+++|+++|+. ..+.+++||++|||+|||++||++||+||++||+.|||++++|+||+||++++++++++||
T Consensus 332 l~~ig~~L~~~i~~~~~~-~~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl 410 (443)
T PRK06830 332 LGDIGLFLKDRIKEYFKA-RGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNRFVHLPI 410 (443)
T ss_pred cccHHHHHHHHHHHHhcc-cCCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeH
Confidence 999999999999999863 2335789999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCccCccHHHHHHHHHhcCCCCCCCh
Q 012698 410 NRINERQNQVVITDRMWARVLSSTNQPSFLSA 441 (458)
Q Consensus 410 ~~v~~~~k~v~~~~~~~~~~l~~tgqp~~~~~ 441 (458)
++++..+|++++++.+|.++|++||||.|+.+
T Consensus 411 ~~v~~~~k~vd~~~~~w~~~l~~tgq~~~~~~ 442 (443)
T PRK06830 411 DLAVSKRKKVNPEGDLWRSVLESTGQPRSMGN 442 (443)
T ss_pred HHHhccCCCCCCccHHHHHHHHHhCCCccccc
Confidence 99999889999999999999999999999764
No 3
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=1.3e-102 Score=817.10 Aligned_cols=424 Identities=49% Similarity=0.815 Sum_probs=376.8
Q ss_pred cccccchhhhCC--CCCCCcCCCCCCccccccc--------ccccccchhHHHHHHhccC--CCCcchhhhcCCCccccc
Q 012698 20 LEDVPHLTDYIP--DLPTYPNPLQFNAAYSVVK--------QYFVNVDDTVSQKIVVHKD--SPRGTHFRRAGPRQKVYF 87 (458)
Q Consensus 20 ~eav~~l~~~~p--~~p~~~~~l~~n~~~~~~~--------~~~v~~t~~v~~~~~~~~~--~~~~~~f~~~~~~~~~~~ 87 (458)
+|.|.+|.--.| .+|...++.-+...++.|+ ..||++++.|+..+..++. ..+...|+++|||+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~agpr~~~~f 83 (459)
T PTZ00286 4 IERVNNLIIDLPDAPLPSVVNPDLGECNLRGVFGGNGFLPREAFVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYF 83 (459)
T ss_pred eecccccccCCccccCCCcccccCCcCCCCCCccccccCCccceecCCCeEEeecccCccccccccchheecCCceeEEE
Confidence 344555543333 2444444444433333333 4799999999988765542 235678999999999999
Q ss_pred CCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcc
Q 012698 88 VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH 167 (458)
Q Consensus 88 ~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~ 167 (458)
+|+++|||||||||||||||++||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++|||+|||||+++
T Consensus 84 ~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~ 163 (459)
T PTZ00286 84 NPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGF 163 (459)
T ss_pred cccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChh
Confidence 99999999999999999999999999999987788889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHHH
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAAH 233 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i~ 233 (458)
++++++++|++++||+||+|||||||++|.+|++++++++++|+||||||||||||+ ++++|++++
T Consensus 164 ~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~ 243 (459)
T PTZ00286 164 DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAY 243 (459)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 578999999
Q ss_pred HHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCCcchhH
Q 012698 234 VEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLA 313 (458)
Q Consensus 234 ~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vVvVaEGa~~~~~~ 313 (458)
+||.|+++||||||+|||+|||||++++||+++||+|||||.||+++ +++++|++|+++++|+|||||||+.+.+.+
T Consensus 244 ~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f~l~---~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~ 320 (459)
T PTZ00286 244 VEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKD 320 (459)
T ss_pred HHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEecCCcccccc
Confidence 99999988999999999999999999999995599999999999997 799999999999999999999999887665
Q ss_pred HHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCC
Q 012698 314 ESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYT 393 (458)
Q Consensus 314 ~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~t 393 (458)
... ...+|++||+++++++.+|+++|+++|+.+ +..+++||++|||+|||++||++|+.||++||+.|||++++|+|
T Consensus 321 ~~~--~~~~D~~Gn~~l~dig~~L~~~I~~~~~~~-~~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~t 397 (459)
T PTZ00286 321 ADL--DLGTDASGNKKLWDIGVYLKDEITKYLKKK-KPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFT 397 (459)
T ss_pred ccc--cccccccCCcccccHHHHHHHHHHHHHhhc-cCceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 433 235899999999999999999999998643 45688999999999999999999999999999999999999999
Q ss_pred ceEEEEECCeEeeechhhh-hhcCCccCccHHHHHHHHHhcCCCCCCChHHHHHhhh
Q 012698 394 GFTVGPVNGRHAYIPFNRI-NERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKR 449 (458)
Q Consensus 394 g~mvgi~~~~~~~vPl~~v-~~~~k~v~~~~~~~~~~l~~tgqp~~~~~~~~~~~~~ 449 (458)
|+||++++++++++||+++ ...+|++++++.+|.+++++||||+|+++++....++
T Consensus 398 g~~Vg~~~~~~~~vPl~~v~~~~~~~v~~~~~~w~~~~~~tgqp~~~~~~~~~~~~~ 454 (459)
T PTZ00286 398 GFIIGHVHNNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAITGQPSFLNNEEIERHQR 454 (459)
T ss_pred CEEEEEECCEEEEEeHHHHhCCCccccCcchHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 9999999999999999994 5667899999999999999999999999877665443
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=1.1e-96 Score=763.89 Aligned_cols=360 Identities=54% Similarity=0.912 Sum_probs=334.7
Q ss_pred cchhhhcCCCcccccCCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC--cccCChhHHh
Q 012698 73 GTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN--TINLTPKVVN 150 (458)
Q Consensus 73 ~~~f~~~~~~~~~~~~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~--~~~L~~~~v~ 150 (458)
...|.|+|||+++||+|+++|||||||||||||||++||++++.+. .++..+||||++||+||++++ .++|+|++|+
T Consensus 35 ~~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~-~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~ 113 (411)
T PLN02884 35 EQWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE-IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQ 113 (411)
T ss_pred hhhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHH-HcCCcEEEEEccCHHHHhCCCceeeecCHHHHH
Confidence 3578999999999999999999999999999999999999999985 366668999999999999998 5678999999
Q ss_pred chhhcCccccccCCCcchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh------
Q 012698 151 DIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP------ 224 (458)
Q Consensus 151 ~~~~~GGs~LGtsR~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~------ 224 (458)
+|+++|||+|||||+++++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||+
T Consensus 114 ~i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~Ti 193 (411)
T PLN02884 114 NIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTF 193 (411)
T ss_pred HHHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999998
Q ss_pred --------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCC-CceEecCCCCCCccchhhHHHHHHHHHHh
Q 012698 225 --------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRD-VDCCLIPESPFYLEGEGGLYEFIEKRLKE 295 (458)
Q Consensus 225 --------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~-ad~ilIPE~~~~l~~~~~~~~~i~~r~~~ 295 (458)
++++|++++.||.|+++||||||+|||+|||||+++|||+ + ||+|||||.||+++++++++++|+++++.
T Consensus 194 GFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~-g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~ 272 (411)
T PLN02884 194 GFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLAS-GQVDICLIPEVPFTLDGPNGVLRHLEHLIET 272 (411)
T ss_pred CHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhc-CCCCEEEeCCCCCCcccHHHHHHHHHHHHhc
Confidence 5678999999998866789999999999999999999999 6 99999999999998777999999999998
Q ss_pred CCcEEEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHH
Q 012698 296 NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNV 375 (458)
Q Consensus 296 ~~~~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~ 375 (458)
++|+|||||||+++.+... ...+|++||+++++++.+|+++|+++++ +....+++|+++|||+|||++|+++||.
T Consensus 273 k~~~iIVVAEG~g~~~~~~----~~~~Da~G~~~l~~~~~~La~~i~~~~~-~~g~~~~~r~~~lGy~qRgg~p~a~Dr~ 347 (411)
T PLN02884 273 KGSAVVCVAEGAGQDLLQK----TNATDASGNPVLGDIGVHLQQEIKKHFK-DIGVPADVKYIDPTYMIRACRANASDAI 347 (411)
T ss_pred CCcEEEEEecccccccccc----cccccccCCcccCcHHHHHHHHHHHHhh-ccCCCceEEEccCCccccCCCCCHHHHH
Confidence 8999999999997554432 1348999999999999999999999875 2233457899999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCeEeeechhhhhhcCCccCccHHHHHHHHHhcCCCCCC
Q 012698 376 YCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFL 439 (458)
Q Consensus 376 ~a~~lG~~Av~~~~~G~tg~mvgi~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~l~~tgqp~~~ 439 (458)
+|++||+.||+++++|+||+||+++++++.++||+++++.+|+|++++++|++++.+||||+|.
T Consensus 348 la~~lG~~AV~~~~~G~sg~mV~l~~~~~~~vpl~~v~~~~k~vd~~~~~~~~~~~~~gqp~~~ 411 (411)
T PLN02884 348 LCTVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDPNSRMWHRCLTSTGQPDFH 411 (411)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHhcCCCCCCCCcHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999998899999999999999999999984
No 5
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=9.3e-84 Score=662.80 Aligned_cols=336 Identities=25% Similarity=0.441 Sum_probs=299.7
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChh--HH-hchhhcCccccccCCCcc-
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPK--VV-NDIHKRGGTILGTSRGGH- 167 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~--~v-~~~~~~GGs~LGtsR~~~- 167 (458)
+||||+||||||||||++||++++++...+.+.+|||+++||+||+++++++|+.. ++ +.|+++|||+|||||+++
T Consensus 4 k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~~ 83 (403)
T PRK06555 4 KKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLT 83 (403)
T ss_pred CEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCceeccCCCCcc
Confidence 59999999999999999999999987654466799999999999999999999986 44 459999999999999743
Q ss_pred ----------------hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh-------
Q 012698 168 ----------------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP------- 224 (458)
Q Consensus 168 ----------------~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~------- 224 (458)
++++++++|++++||+||+||||||+++|++|++++.++++.|+||||||||||||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~G 163 (403)
T PRK06555 84 NVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLG 163 (403)
T ss_pred ccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcC
Confidence 378999999999999999999999999999999999988889999999999999998
Q ss_pred -------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhccc-------------------CCCceEecCCCCCC
Q 012698 225 -------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGS-------------------RDVDCCLIPESPFY 278 (458)
Q Consensus 225 -------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~-------------------~~ad~ilIPE~~~~ 278 (458)
++++|+++++||.|+++.++|||||||+|||||+++|||+ .+||+|||||.||+
T Consensus 164 f~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE~~~~ 243 (403)
T PRK06555 164 AWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMAFD 243 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccCCCCC
Confidence 5678999999999987655566999999999999999992 38999999999999
Q ss_pred ccchhhHHHHHHHHHHhCCcEEEEEeCCCCcchhHHHHhh---hccccccCCccccc--hHHHHHHHHHHhhcccceeee
Q 012698 279 LEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQS---MNQQDASGNKLLQD--VGLWISHKIKDHFARLHKMAI 353 (458)
Q Consensus 279 l~~~~~~~~~i~~r~~~~~~~vVvVaEGa~~~~~~~~~~~---~~~~D~~G~~~l~~--i~~~L~~~I~e~~~~~~~~~~ 353 (458)
++ ++++.|++++++++|+|||||||+.+....+.... ...+|++||.++.+ ++.+|+++|+++++.+
T Consensus 244 ~e---~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~g~e----- 315 (403)
T PRK06555 244 LE---AEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLGAE----- 315 (403)
T ss_pred HH---HHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHhCCC-----
Confidence 98 79999999998899999999999976544332211 12489999999986 6899999999988642
Q ss_pred eeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEE---ECCeEeeechhhhhhcCCccCccHHHHHHHH
Q 012698 354 NLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGP---VNGRHAYIPFNRINERQNQVVITDRMWARVL 430 (458)
Q Consensus 354 ~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mvgi---~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~l 430 (458)
.+|+++|||+|||++|+++||.+|++||..||+++++|+|| ||++ +|+++.++||+++.. +|.++++..||++++
T Consensus 316 ~~r~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~~~~vp~~~~~~-~k~~~~~~~~~~~~~ 393 (403)
T PRK06555 316 KVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGKLRAIEFPRIKG-GKAFDTSTPWFTELL 393 (403)
T ss_pred ceEEecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCEEEEEEHHHHhc-CCCCCCCHHHHHHHH
Confidence 25678999999999999999999999999999999999999 6788 799999999999887 488999999999999
Q ss_pred HhcCCCC
Q 012698 431 SSTNQPS 437 (458)
Q Consensus 431 ~~tgqp~ 437 (458)
+.||||.
T Consensus 394 ~~~~q~~ 400 (403)
T PRK06555 394 DEIGQPY 400 (403)
T ss_pred HhhCCCC
Confidence 9999996
No 6
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=5.8e-80 Score=678.78 Aligned_cols=387 Identities=20% Similarity=0.247 Sum_probs=338.1
Q ss_pred CcccccccchhhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHhccCC-----CCcchhhhcC--------C--
Q 012698 17 GYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG--------P-- 81 (458)
Q Consensus 17 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~--------~-- 81 (458)
-++.+||.++++.+++++.+++.+++|++.+.|+.++++.|+.|..++. +++| +|+++|.++. +
T Consensus 300 ~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~~r~~~f~~~~~~~~~~~~~~~ 378 (745)
T TIGR02478 300 RQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIK-EKRFAEAMRLRGREFVENLATFLFLSIPDQ 378 (745)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHH-hccHHHHHHhcCHHHHHHHHHHHhhhccCC
Confidence 3678999999999999999999999999999999999999999999987 7887 6999998875 1
Q ss_pred Cccccc-CCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCcccc
Q 012698 82 RQKVYF-VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTIL 160 (458)
Q Consensus 82 ~~~~~~-~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~L 160 (458)
+..... ..+++||||+||||||||||++||++++.+.. .+.+||||++||+||+++++.+|+|.+|++|+++|||+|
T Consensus 379 ~~~~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~L 456 (745)
T TIGR02478 379 DKKLVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAIA--RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSEL 456 (745)
T ss_pred ccccCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHHh--CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCccc
Confidence 211212 24458999999999999999999999998863 457999999999999999999999999999999999999
Q ss_pred ccCCCc--chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCCeeEeeecccccCchh-------------
Q 012698 161 GTSRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIP------------- 224 (458)
Q Consensus 161 GtsR~~--~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~------------- 224 (458)
||+|+. +++++++++|++++||+||+|||||||++|.+|+++..++ ++.|+||||||||||||+
T Consensus 457 gtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~ 536 (745)
T TIGR02478 457 GTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALN 536 (745)
T ss_pred ccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHH
Confidence 999985 4799999999999999999999999999999999986655 477999999999999999
Q ss_pred -HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhC--CcEEE
Q 012698 225 -AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN--GHMVI 301 (458)
Q Consensus 225 -a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~--~~~vV 301 (458)
+.++|++++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++++.++++++++|++.. ++.+|
T Consensus 537 ~~~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~-gad~iliPE~~~~~~~l~~~v~~i~~~~~~~~~~~~ii 615 (745)
T TIGR02478 537 EITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKEKFAHGNRAGKLI 615 (745)
T ss_pred HHHHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 4678899999999987899999999999999999999999 8999999999999997666677888888764 78999
Q ss_pred EEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHH
Q 012698 302 VIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLA 381 (458)
Q Consensus 302 vVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG 381 (458)
+++||+...+. +..|++.|+++.+. .+.+|+.+|||+|||+.||++||++|++||
T Consensus 616 v~~Eg~~~~~~---------------------~~~l~~~i~~e~~~----~~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG 670 (745)
T TIGR02478 616 LRNENASKNYT---------------------TDFIARIISEEAKG----RFDARTAVLGHMQQGGSPSPFDRNRATRLA 670 (745)
T ss_pred EEeCCCccCCC---------------------HHHHHHHHHHHhcC----CCceEeccCCccccCCCCCHHHHHHHHHHH
Confidence 99999854332 34577777755331 356789999999999999999999999999
Q ss_pred HHHHHHHHcC------------CCceEEEEECCeEeeechhhhhhcCCc---cCccHHHHHHHHHh
Q 012698 382 QSAVHGAVAG------------YTGFTVGPVNGRHAYIPFNRINERQNQ---VVITDRMWARVLSS 432 (458)
Q Consensus 382 ~~Av~~~~~G------------~tg~mvgi~~~~~~~vPl~~v~~~~k~---v~~~~~~~~~~l~~ 432 (458)
..||+++++| ++++|||+++++++++||+++...+.. -.|+..||.++...
T Consensus 671 ~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~p~~~~~~~~~d~~~r~p~~~~w~~~~~~ 736 (745)
T TIGR02478 671 IRAVDFIEEKIKKSADKLGADDTSAVVIGIRGSNVLFTPVKGLLAKETDFEHRRPKNQWWLDLRPL 736 (745)
T ss_pred HHHHHHHHhCCcccccccccCCCccEEEEEECCEEEEEEHHHHHhhccCcccCCCCCchhhhHHHH
Confidence 9999999998 799999999999999999986544322 22778899887654
No 7
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.4e-79 Score=629.37 Aligned_cols=318 Identities=27% Similarity=0.410 Sum_probs=286.0
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CcccCChhHHhchhhcCccccccCCC-c-
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRG-G- 166 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGtsR~-~- 166 (458)
.+||||+||||||||||++||++++++.+.++ .+||||++||+||+++ ++.+|+|.++++|.++|||+|||||. .
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~~~g-~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~ 82 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARGTYG-WEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDP 82 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHhcCC-CEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCc
Confidence 36999999999999999999999999875334 5999999999999999 89999999999999999999999973 1
Q ss_pred -----------chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh-----------
Q 012698 167 -----------HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------- 224 (458)
Q Consensus 167 -----------~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----------- 224 (458)
+++++++++|++++||+||+|||||||++|++|++. ..|+||||||||||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~TA 157 (360)
T PRK14071 83 FAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDTA 157 (360)
T ss_pred cccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhHH
Confidence 246899999999999999999999999999999862 26789999999999998
Q ss_pred ---HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-CCcEE
Q 012698 225 ---AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMV 300 (458)
Q Consensus 225 ---a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~v 300 (458)
++++|++++++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ ++|+|
T Consensus 158 ~~~~~~~id~i~~ta~s~-~rv~ivEvMGR~~G~LAl~~~la~-ga~~iliPE~~~~~~---~l~~~i~~~~~~~~~~~i 232 (360)
T PRK14071 158 VNIATEALDRLHFTAASH-NRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEGKNFCL 232 (360)
T ss_pred HHHHHHHHHHHHhhhccc-CCEEEEEECCCCccHHHHHhHhhc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEE
Confidence 567899999999996 689999999999999999999999 899999999999988 799999999987 78999
Q ss_pred EEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHH
Q 012698 301 IVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLL 380 (458)
Q Consensus 301 VvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~l 380 (458)
||||||+....- + ....+|++||+++++++++|+++|+++++.+ +|...|||+|||+.||++||.+|++|
T Consensus 233 ivvsEG~~~~~g-~---~~~~~d~~g~~~~~~~~~~l~~~i~~~~g~~------~r~~~lG~~qRgg~ps~~Dr~~a~~l 302 (360)
T PRK14071 233 VVVSEAVRTEEG-E---QVTKTQALGEDRYGGIGQYLAEQIAERTGAE------TRVTVLGHIQRGGIPSPRDRLLASAF 302 (360)
T ss_pred EEEcCCCccccc-c---cccccccccccccCcHHHHHHHHHHHhcCCC------eeEEecChhhcCCCCChHHHHHHHHH
Confidence 999999864311 1 1123799999999999999999999987643 45678999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEECCeEeeechhhhhhcCCccCccHHHHHHH
Q 012698 381 AQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARV 429 (458)
Q Consensus 381 G~~Av~~~~~G~tg~mvgi~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~ 429 (458)
|..||+++++|+||+||+++++++.++||+++++.+|.+++++.+|...
T Consensus 303 G~~Av~~~~~G~t~~mv~~~~~~~~~vpl~~v~~~~~~v~~~~~~~~~~ 351 (360)
T PRK14071 303 GVAAVDLIAQGKFDRMVAWQNRQVVSVPIAEAIATYRAVDPEGTLVKTA 351 (360)
T ss_pred HHHHHHHHHcCCCCEEEEEECCEEEEEeHHHHhcCCCCCCccHHHHHHH
Confidence 9999999999999999999999999999999998889999977777643
No 8
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2e-79 Score=638.45 Aligned_cols=330 Identities=21% Similarity=0.343 Sum_probs=287.5
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhc---hhhcCccccccCCCcc
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVND---IHKRGGTILGTSRGGH 167 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~---~~~~GGs~LGtsR~~~ 167 (458)
.+||||+||||||||||++||++++++.+..+..+||||++||+||+++++++|+..+++. |.++|||+|||||++.
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~ 82 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKL 82 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCC
Confidence 3699999999999999999999999987543337999999999999999999999887777 8999999999999853
Q ss_pred --------hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------H
Q 012698 168 --------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------A 225 (458)
Q Consensus 168 --------~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a 225 (458)
++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||+ +
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~i 162 (416)
T PRK14072 83 KSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYI 162 (416)
T ss_pred cccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHHH
Confidence 489999999999999999999999999999999999989989999999999999998 4
Q ss_pred HHHHHHHHHHhhhcCC--cEEEEEecCCcchhHHHHhhcc-----cCCCceEecCCCCCCccchhhHHHHHHHHHHhCCc
Q 012698 226 QRAINAAHVEAESIEN--GIGVVKLMGRYCGFIAMYATLG-----SRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGH 298 (458)
Q Consensus 226 ~~ai~~i~~~A~s~~~--rv~iVEvMGR~~G~lA~~aaLA-----~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~ 298 (458)
+++|+++..++.++.+ ||||||||||+|||||+++||| + +||+|||||.||+++ ++++.|++++++++|
T Consensus 163 ~~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~-gad~iliPE~~~~~~---~~~~~i~~~~~~~~~ 238 (416)
T PRK14072 163 ATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDD-APHLIYLPERPFDEE---KFLADVRAIVKRYGY 238 (416)
T ss_pred HHHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCC-CccEEEccCCCCCHH---HHHHHHHHHHHhCCC
Confidence 5677787444432211 8999999999999999999999 7 899999999999987 799999999888999
Q ss_pred EEEEEeCCCCcchhHHHHh-hhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCC--CChhhHH
Q 012698 299 MVIVIAEGAGQDLLAESLQ-SMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIP--SNASDNV 375 (458)
Q Consensus 299 ~vVvVaEGa~~~~~~~~~~-~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~--p~a~Dr~ 375 (458)
+|||||||+.... .+.+. ....+|++||+++++++++|+++|+++++. .+|+.+|||+|||++ ||++||.
T Consensus 239 ~ivvVaEG~~~~~-g~~i~e~~~~~D~~gh~~l~g~~~~La~~i~~~~g~------~~R~~~LG~~QRgg~~~ps~~Dr~ 311 (416)
T PRK14072 239 CVVVVSEGIRDAD-GKFIAEAGLAEDAFGHAQLGGVAPVLANLIKEKLGK------KVHWAVLDYLQRAARHIASKTDVE 311 (416)
T ss_pred eEEEEecCccccc-ccchhccccccCCCCCcccccHHHHHHHHHHHHhCC------eEEEEeCChhhhCCCCCCCHHHHH
Confidence 9999999985321 11111 112369999999999999999999998863 467889999999999 9999999
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEECC-------eEeeechhhhhhcCCccC------------ccHHHHHHHHH
Q 012698 376 YCTLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINERQNQVV------------ITDRMWARVLS 431 (458)
Q Consensus 376 ~a~~lG~~Av~~~~~G~tg~mvgi~~~-------~~~~vPl~~v~~~~k~v~------------~~~~~~~~~l~ 431 (458)
+|++||..||+++++|+||+||+++++ ++..+||+++++++|+++ .++..|.+.|-
T Consensus 312 ~a~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~~~k~v~~~~i~~~~~~v~~~~~~y~~pli 386 (416)
T PRK14072 312 EAYAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVANKEKKMPPEFINEDGNGITEAFRRYLRPLI 386 (416)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHhhcCcCCHHHHhcCCCCcCHHHHHHHHHHh
Confidence 999999999999999999999999998 899999999988766665 33557777766
No 9
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.8e-79 Score=672.19 Aligned_cols=383 Identities=20% Similarity=0.222 Sum_probs=331.6
Q ss_pred CcccccccchhhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHhccCC-----CCcchhhhcCC--------Cc
Q 012698 17 GYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGP--------RQ 83 (458)
Q Consensus 17 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~--------~~ 83 (458)
-++++||.+|++.+|++|.+++.+++|++++.|++++++.|+.|+++|+ +++| +|+++|.+++. +.
T Consensus 303 ~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~ 381 (762)
T cd00764 303 LMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMD-EKRFDEAAALRGKSFDKNWNLYKLLAIELP 381 (762)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhh-hhhHHHHHHhcchhHHHHHHHHHhccccCC
Confidence 3679999999999999999999999999999999999999999999998 7888 69999999861 11
Q ss_pred ccccCCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccC
Q 012698 84 KVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS 163 (458)
Q Consensus 84 ~~~~~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGts 163 (458)
......+++||||+||||||||||++||++++++.. .+++||||++||+||+++++++|+|.+|++|+++|||+|||+
T Consensus 382 ~~~~~~~~~~IaIltsGG~apGmNaairavv~~a~~--~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~ 459 (762)
T cd00764 382 QPLPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA--HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTK 459 (762)
T ss_pred ccCCcccccEEEEEecCCCchhHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCccccccc
Confidence 111123348999999999999999999999998863 468999999999999999999999999999999999999999
Q ss_pred CCc--chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCCeeEeeecccccCchh--------------HH
Q 012698 164 RGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIP--------------AQ 226 (458)
Q Consensus 164 R~~--~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~--------------a~ 226 (458)
|+. +++++++++|++++||+||+|||||||++|++|++++.+| .+.|+||||||||||||+ ++
T Consensus 460 R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~~ 539 (762)
T cd00764 460 RTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALM 539 (762)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHHH
Confidence 985 4799999999999999999999999999999999988766 378999999999999999 56
Q ss_pred HHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-----CCcEEE
Q 012698 227 RAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-----NGHMVI 301 (458)
Q Consensus 227 ~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-----~~~~vV 301 (458)
++|++++++|+|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.++++.+++++ +.+.++
T Consensus 540 ~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~-GAd~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~~~ 618 (762)
T cd00764 540 KYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRNE 618 (762)
T ss_pred HHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEeee
Confidence 78899999999988899999999999999999999999 899999999999999777777777766654 246788
Q ss_pred EEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHH
Q 012698 302 VIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLA 381 (458)
Q Consensus 302 vVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG 381 (458)
++|||+.... ++..+++++++ .+++|...|||+||||.||++||++|++||
T Consensus 619 ~~se~~~~~~---------------------~~~~~~~~~~~--------~~~~R~~vLGh~QrGG~Ps~~DR~latr~g 669 (762)
T cd00764 619 KCNENYTTVF---------------------TYELYSEEGKG--------VFDCRTNVLGHVQQGGAPSPFDRNFGTKFA 669 (762)
T ss_pred eeecCCcccc---------------------HHHHHHHHHhc--------CCceEecccccccCCCCCCHHHHHHHHHHH
Confidence 9999974211 23345555543 256788999999999999999999999999
Q ss_pred HHHHHHHHcC---------------CCceEEEEECCeEeeechhhhhhcC-CccCccHHHHHHHHHh
Q 012698 382 QSAVHGAVAG---------------YTGFTVGPVNGRHAYIPFNRINERQ-NQVVITDRMWARVLSS 432 (458)
Q Consensus 382 ~~Av~~~~~G---------------~tg~mvgi~~~~~~~vPl~~v~~~~-k~v~~~~~~~~~~l~~ 432 (458)
.+||+++.+. .+.+++|++++++.+.|+.++.+.. .+-.|+..||..+...
T Consensus 670 ~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~r~p~~~~w~~~~~~ 736 (762)
T cd00764 670 VKAMKWIEQKLKENYAAGNEFANDPDFNCVNGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRPL 736 (762)
T ss_pred HHHHHHHHHhhhhhhcccccccCCCCceEEEEEeCCEEEEeeHHHHHHhhhhcCCCcchhhHhHHHH
Confidence 9999999974 3889999999999999999887743 1222778899776554
No 10
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=6.6e-79 Score=616.58 Aligned_cols=302 Identities=33% Similarity=0.510 Sum_probs=275.0
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccC-ChhHHhchhhcCccccccCCCcc----
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINL-TPKVVNDIHKRGGTILGTSRGGH---- 167 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L-~~~~v~~~~~~GGs~LGtsR~~~---- 167 (458)
|||||||||||||||++||++++++.+.+ +.+||||++||+||+++++++| +|++++.|.++|||+|||||+++
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~-g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~ 79 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEY-GWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYE 79 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcC-CceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCccccCCCCCccccC
Confidence 69999999999999999999999886433 4699999999999999999999 99999999999999999999842
Q ss_pred --hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHH
Q 012698 168 --DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINA 231 (458)
Q Consensus 168 --~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~ 231 (458)
++++++++|++++||+||+|||||||++|++|++ .+ |+|||||||||||++ +++++++
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~----~g--i~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i~~ 153 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLAD----KG--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDR 153 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHh----cC--CCEEeeccccCCCCcCCccCcCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999986 23 889999999999999 5678899
Q ss_pred HHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcc
Q 012698 232 AHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQD 310 (458)
Q Consensus 232 i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~ 310 (458)
+++||.|+ +||||||+|||+|||||+++|||+ +||+|||||+||+++ +++++|++|+++ ++|++||||||+...
T Consensus 154 i~~ta~S~-~r~~ivEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~v~~~~~~g~~~~vvvvsEG~~~~ 228 (324)
T TIGR02483 154 LHTTAESH-HRVMVVEVMGRHAGWIALHSGIAG-GADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAKPK 228 (324)
T ss_pred HHHHHhhc-CCEEEEEEcCCChhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHhCCCceEEEEecCcccc
Confidence 99999996 689999999999999999999999 899999999999987 799999999988 799999999999765
Q ss_pred hhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 012698 311 LLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVA 390 (458)
Q Consensus 311 ~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~ 390 (458)
+..... ....+|++||+++++++++|+++|+++++. .+|...|||+|||+.|+++||.+|++||.+||+++++
T Consensus 229 ~~~~~~-~~~~~d~~gh~~~~~~~~~l~~~i~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~ 301 (324)
T TIGR02483 229 GGEMVV-QEGVKDAFGHVRLGGIGNWLAEEIERRTGI------ETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHE 301 (324)
T ss_pred ccchhc-cccccccccCcccCcHHHHHHHHHHHhcCC------cceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 433322 234589999999999999999999998763 4567889999999999999999999999999999999
Q ss_pred CCCceEEEEECCeEeeechhhhh
Q 012698 391 GYTGFTVGPVNGRHAYIPFNRIN 413 (458)
Q Consensus 391 G~tg~mvgi~~~~~~~vPl~~v~ 413 (458)
|+||+||++++++++++||++++
T Consensus 302 g~~~~mv~~~~~~~~~~p~~~~~ 324 (324)
T TIGR02483 302 GQFGHMVALRGTDIVYVPIAEAV 324 (324)
T ss_pred CCCCeEEEEECCEEEEeeHHHhC
Confidence 99999999999999999999863
No 11
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=5.3e-78 Score=613.93 Aligned_cols=311 Identities=29% Similarity=0.425 Sum_probs=284.2
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcc----
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~---- 167 (458)
+||||+||||||||||++||++++++.+ ++ .+||||++||+||+++++++|+|+++++|+++|||+|||||+++
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~-~g-~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 78 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA-EG-LEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTE 78 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCH
Confidence 4899999999999999999999999975 44 69999999999999999999999999999999999999999753
Q ss_pred -hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHH
Q 012698 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAA 232 (458)
Q Consensus 168 -~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i 232 (458)
++++++++|++++||+||+||||||+++|.+|++++++++.+|+|||||||||||++ ++++|+++
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~l 158 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999 56789999
Q ss_pred HHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012698 233 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 311 (458)
Q Consensus 233 ~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~ 311 (458)
++||.| ++||||||+|||+|||||+++|||+ +||+|||||.||+.+.++.+++.|++|+++ ++|++||||||+.+..
T Consensus 159 ~~~a~s-~~rv~ivEvMGR~~G~Lal~~ala~-~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~~~ 236 (338)
T cd00363 159 RDTASS-HQRTFVVEVMGRHCGDIALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDFI 236 (338)
T ss_pred HHhccc-CCCEEEEEECCcCHHHHHHHHHHHh-CCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCcccc
Confidence 999999 5799999999999999999999999 899999999999666666899999999887 7899999999996422
Q ss_pred hHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012698 312 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 391 (458)
Q Consensus 312 ~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G 391 (458)
|++ ....+|+++|+++++ +++|+..|||+|||++|+++||.+|++||..|++++++|
T Consensus 237 --------------~~~---~~~~~l~~~i~~~~~------~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g 293 (338)
T cd00363 237 --------------PKP---ITEKLLAKLVEERLG------FDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEG 293 (338)
T ss_pred --------------ccC---chHHHHHHHHHHHcC------CceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Confidence 111 125689999998875 346678899999999999999999999999999999999
Q ss_pred CCceEEEEECC---eEeeechhhhhhcCCc--cCccHHHHHHH
Q 012698 392 YTGFTVGPVNG---RHAYIPFNRINERQNQ--VVITDRMWARV 429 (458)
Q Consensus 392 ~tg~mvgi~~~---~~~~vPl~~v~~~~k~--v~~~~~~~~~~ 429 (458)
+||+|++++++ ++.++||+++++.+|+ |++++.+|..+
T Consensus 294 ~tg~mv~~~~~~~~~~~~vpl~~~~~~~~~~~~~~~~~~~~~~ 336 (338)
T cd00363 294 TGGTPVGIQNLNENQVVRHPLTEAVNMTKRVGVDLEGRPFKKF 336 (338)
T ss_pred CCCcEEEEECCccCEEEEecHHHHHhhhcccccCCChHHHHHh
Confidence 99999999999 9999999999999998 68999888754
No 12
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=1.6e-77 Score=604.47 Aligned_cols=288 Identities=29% Similarity=0.424 Sum_probs=263.2
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-----
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG----- 166 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~----- 166 (458)
+||||+||||||||||++||++++.+.+ + +.+|||+++||+||+++++++|+|.++++|+++|||+|||||++
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~ 78 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIA-E-GLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDE 78 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCCH
Confidence 4899999999999999999999999864 3 46999999999999999999999999999999999999999984
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHH
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAA 232 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i 232 (458)
+++++++++|++++||+||+|||||||++|++|+++ .++|||||||||||++ ++++++++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i 152 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRI 152 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 258999999999999999999999999999999874 4789999999999999 45788999
Q ss_pred HHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012698 233 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 311 (458)
Q Consensus 233 ~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~ 311 (458)
+++|+|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|+|||||||+..
T Consensus 153 ~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~vivvaEG~~~-- 225 (317)
T cd00763 153 RDTSSSH-QRISVVEVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVYD-- 225 (317)
T ss_pred HHHHhcC-CCEEEEEeCCCChHHHHHHHHHHc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCCCC--
Confidence 9999885 689999999999999999999999 899999999999987 799999999887 78999999999852
Q ss_pred hHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012698 312 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 391 (458)
Q Consensus 312 ~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G 391 (458)
...|++.|+++++. .+|+..|||+|||++|+++||.+|++||.+||+++++|
T Consensus 226 ----------------------~~~l~~~l~~~~g~------~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g 277 (317)
T cd00763 226 ----------------------VDELAKEIEEATGF------ETRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAG 277 (317)
T ss_pred ----------------------HHHHHHHHHHHhCC------CcceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcC
Confidence 12477788877653 35667899999999999999999999999999999999
Q ss_pred CCceEEEEECCeEeeechhhhhhcCCccCcc
Q 012698 392 YTGFTVGPVNGRHAYIPFNRINERQNQVVIT 422 (458)
Q Consensus 392 ~tg~mvgi~~~~~~~vPl~~v~~~~k~v~~~ 422 (458)
++|+||+++++++.++||+++.+.+|+++++
T Consensus 278 ~~~~mv~~~~~~~~~~pl~~~~~~~k~~~~~ 308 (317)
T cd00763 278 KGGLAVGIQNEQLVHHDIIDAIENMKPFKKD 308 (317)
T ss_pred CCCeEEEEECCEEEEecHHHHhhCCCCCCHH
Confidence 9999999999999999999999888888773
No 13
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=5.5e-77 Score=596.49 Aligned_cols=280 Identities=31% Similarity=0.467 Sum_probs=255.5
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-----c
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-----H 167 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-----~ 167 (458)
||||+||||||||||++||++++++.+ + +.+|||+++||+||+++++++|+|+++++|+++|||+|||||++ +
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 78 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY-H-GFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEE 78 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHH
Confidence 699999999999999999999999864 4 46999999999999999999999999999999999999999984 2
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHHH
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAAH 233 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i~ 233 (458)
++++++++|++++||+||+|||||||++|++|+++ +.|+|||||||||||++ ++++|++++
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~ 153 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIR 153 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999986 36889999999999999 467889999
Q ss_pred HHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcchh
Q 012698 234 VEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDLL 312 (458)
Q Consensus 234 ~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~~ 312 (458)
++|.|+ +||||||+|||+|||||+++|||+ +||+|||||+||+++ +++++|++|+++ ++|++||||||+...
T Consensus 154 ~ta~s~-~rv~ivEvMGR~~G~lAl~~~la~-gad~iliPE~~~~~~---~l~~~i~~r~~~g~~~~iIvvaEG~~~~-- 226 (301)
T TIGR02482 154 DTATSH-ERAFVIEVMGRHAGDLALYSGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIVG-- 226 (301)
T ss_pred HHhhcC-CCEEEEEeCCCCHHHHHHHHHHHc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEeCCCcCC--
Confidence 999996 589999999999999999999999 899999999999987 799999999987 789999999994310
Q ss_pred HHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCC
Q 012698 313 AESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY 392 (458)
Q Consensus 313 ~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~ 392 (458)
.+..|+++|+++++ +++|+..|||+|||++||++||.+|++||.+||+++++|+
T Consensus 227 --------------------~~~~l~~~l~~~~g------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~ 280 (301)
T TIGR02482 227 --------------------SAKEVAKKIEEATG------IETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGK 280 (301)
T ss_pred --------------------cHHHHHHHHHHhcC------CeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 02357888877654 3467788999999999999999999999999999999999
Q ss_pred CceEEEEECCeEeeechhhh
Q 012698 393 TGFTVGPVNGRHAYIPFNRI 412 (458)
Q Consensus 393 tg~mvgi~~~~~~~vPl~~v 412 (458)
+|+||+++++++.++||+++
T Consensus 281 ~~~mv~~~~~~~~~~p~~~~ 300 (301)
T TIGR02482 281 GGVMIGIQNNKIVTHPIEEA 300 (301)
T ss_pred CCEEEEEECCEEEEeeHHHh
Confidence 99999999999999999986
No 14
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2e-76 Score=597.20 Aligned_cols=289 Identities=30% Similarity=0.448 Sum_probs=264.7
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcc----
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~---- 167 (458)
+||||+||||||||||++|+++++++.. . +.+||||++||+||+++++++|+|+++++|.++|||+|||||+++
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~-~-g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 79 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS-E-GLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDE 79 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH-C-CCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCH
Confidence 5899999999999999999999999864 3 569999999999999999999999999999999999999999742
Q ss_pred -hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHH
Q 012698 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAA 232 (458)
Q Consensus 168 -~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i 232 (458)
++++++++|++++||+||+|||||||++|++|+++ .++|||||||||||++ ++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l 153 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRL 153 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999863 6889999999999999 46788999
Q ss_pred HHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012698 233 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 311 (458)
Q Consensus 233 ~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~ 311 (458)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ ++|++||||||+.+
T Consensus 154 ~~~a~s~-~rv~iVEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~i~~r~~~g~~~~vivvsEg~~~-- 226 (320)
T PRK03202 154 RDTASSH-ERVFIVEVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVMP-- 226 (320)
T ss_pred HHHHhcc-CCEEEEEECCCChHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHhcCCcEEEEEeCCCCC--
Confidence 9999996 689999999999999999999999 899999999999987 799999999987 79999999999954
Q ss_pred hHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012698 312 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 391 (458)
Q Consensus 312 ~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G 391 (458)
...|++.|+++++ +++|+.+|||+|||++|+++||.+|++||.+||+++++|
T Consensus 227 ----------------------~~~l~~~i~~~~~------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 278 (320)
T PRK03202 227 ----------------------AEELAKEIEERTG------LETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEG 278 (320)
T ss_pred ----------------------HHHHHHHHHHHhC------CceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 1248888888775 346889999999999999999999999999999999999
Q ss_pred CCceEEEEECCeEeeechhhhh-hcCCccCccH
Q 012698 392 YTGFTVGPVNGRHAYIPFNRIN-ERQNQVVITD 423 (458)
Q Consensus 392 ~tg~mvgi~~~~~~~vPl~~v~-~~~k~v~~~~ 423 (458)
++|+||+++++++.++||+++. +++|.++++.
T Consensus 279 ~~~~~v~~~~~~~~~vpl~~v~~~~~~~~~~~~ 311 (320)
T PRK03202 279 KGGRMVGIQNNKIVHVPIEEAVENMKHPFDKDL 311 (320)
T ss_pred CCCeEEEEECCEEEEEeHHHHHhcCCCCCCHHH
Confidence 9999999999999999999999 6667776633
No 15
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-74 Score=581.29 Aligned_cols=296 Identities=32% Similarity=0.461 Sum_probs=257.4
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcc---
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH--- 167 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~--- 167 (458)
.+||||+|||||||||||+||++++++.. + +.+||||++||+||+++++++|+|++++.|+++|||+|||+|.++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~-g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK-E-GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH-c-CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 46999999999999999999999999975 3 689999999999999999999999999999999999999999853
Q ss_pred --hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHH
Q 012698 168 --DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINA 231 (458)
Q Consensus 168 --~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~ 231 (458)
..++++++|++++||+|++||||||+++|..|+|+. +++|||||||||||++ ++++|++
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~ 154 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDN 154 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999874 4889999999999998 5689999
Q ss_pred HHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHH-h-CCcEEEEEeCCCCc
Q 012698 232 AHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLK-E-NGHMVIVIAEGAGQ 309 (458)
Q Consensus 232 i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~-~-~~~~vVvVaEGa~~ 309 (458)
++.+|+| |+|+||||||||+|||||++||||+ +||+|+|||.+|++ .+.+++..++++.+ + ++|++|+|+||+.+
T Consensus 155 l~dtass-h~r~~iveVMGR~aG~lAl~aglA~-~a~~ilipE~~~~~-~i~~~~~~i~~~~~~~gk~~~iIvvaEG~~~ 231 (347)
T COG0205 155 LRDTASS-HERIFIVEVMGRHAGWLALAAGLAT-GADIILIPEEPADL-IIEELIAEIKAKREARGKKHAIIVVAEGAID 231 (347)
T ss_pred HHHHHhC-cCCEEEEEecCcChhHHHHHHHHhc-CCCEEEecCccccc-hHHHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 9977777 5799999999999999999999999 89999999999988 23367777776444 3 58999999999975
Q ss_pred chhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHH
Q 012698 310 DLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAV 389 (458)
Q Consensus 310 ~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~ 389 (458)
.+. .+|+. +...+++++... .+++|...|||+|||++|++|||+||++||..||++++
T Consensus 232 ~~~-----------~~~~~--------~~~~i~~~~~~~---~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~ 289 (347)
T COG0205 232 QIG-----------ENGAE--------LLAAIEELLALG---DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLL 289 (347)
T ss_pred ccc-----------cchhh--------HHHHHHHHhhhc---ccceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 432 13333 334444443311 14567789999999999999999999999999999999
Q ss_pred cCCCceEEEEECCeEeeechhhhhhcCCc
Q 012698 390 AGYTGFTVGPVNGRHAYIPFNRINERQNQ 418 (458)
Q Consensus 390 ~G~tg~mvgi~~~~~~~vPl~~v~~~~k~ 418 (458)
+|++++||+++|+++++.|+.+.....+.
T Consensus 290 ~g~~~~~v~i~~~~~v~~~~~~~~~~~~~ 318 (347)
T COG0205 290 EGKTGYMVGIRNNKIVHVPIDEAVAPLKM 318 (347)
T ss_pred cCCCCceEEEeCCeeEeehhHhhhhhhhh
Confidence 99999999999999999999987775544
No 16
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=1.4e-73 Score=608.09 Aligned_cols=327 Identities=25% Similarity=0.354 Sum_probs=281.7
Q ss_pred CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCcc-ccccCCCc-
Q 012698 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG- 166 (458)
Q Consensus 89 ~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGtsR~~- 166 (458)
+..+||||+||||||||||++|+++++++...+++.+||||++||+||+++++++|+++.++.|+++||+ +|||||++
T Consensus 65 ~~~~rIgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~ 144 (539)
T TIGR02477 65 HQPLKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKI 144 (539)
T ss_pred ccceEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCC
Confidence 4558999999999999999999999999877677889999999999999999999999999999999996 99999985
Q ss_pred ---chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh----------------HHH
Q 012698 167 ---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------------AQR 227 (458)
Q Consensus 167 ---~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----------------a~~ 227 (458)
+++++++++|++++||+||+||||||+++|.+|++++.+++++|+|||||||||||++ +++
T Consensus 145 ~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~ 224 (539)
T TIGR02477 145 ETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSE 224 (539)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999996 457
Q ss_pred HHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCC----Cccc-hhhHHHHHHHHHHh-CCcEEE
Q 012698 228 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF----YLEG-EGGLYEFIEKRLKE-NGHMVI 301 (458)
Q Consensus 228 ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~----~l~~-~~~~~~~i~~r~~~-~~~~vV 301 (458)
+|++++.+|.|+++||||||+|||+|||||++||||+ +||+|||||+++ ++++ .+.+++.|++|..+ ++|+||
T Consensus 225 ~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvI 303 (539)
T TIGR02477 225 LIGNICRDALSAKKYWHFIRLMGRSASHIALECALQT-HPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVI 303 (539)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 8899988888888899999999999999999999999 899999999997 5543 34566777777766 689999
Q ss_pred EEeCCCCcc--------------------------hhHHHHhh-----------------hccccccCCccccch--HHH
Q 012698 302 VIAEGAGQD--------------------------LLAESLQS-----------------MNQQDASGNKLLQDV--GLW 336 (458)
Q Consensus 302 vVaEGa~~~--------------------------~~~~~~~~-----------------~~~~D~~G~~~l~~i--~~~ 336 (458)
|||||+.+. ++...++. ...+|++||++++++ +.+
T Consensus 304 vvsEGlie~ipe~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~l 383 (539)
T TIGR02477 304 LIPEGLIEFIPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKL 383 (539)
T ss_pred EEeCCchhhcchHHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHH
Confidence 999999541 11000000 024899999999988 788
Q ss_pred HHHHHHHhhcccce-eeeeeeee----CCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------eE
Q 012698 337 ISHKIKDHFARLHK-MAINLKYI----DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-------RH 404 (458)
Q Consensus 337 L~~~I~e~~~~~~~-~~~~l~~i----~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mvgi~~~-------~~ 404 (458)
|+++++++++.... ..+..++. .+||.|||+.||.+|+.||+.||..|++++++|+||+|++++|. ++
T Consensus 384 L~~lV~~~l~~~~~~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~ 463 (539)
T TIGR02477 384 LIELVQTELNKRKKEGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIA 463 (539)
T ss_pred HHHHHHHHHHhhhccccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeE
Confidence 99888887652211 11344555 68999999999999999999999999999999999999999982 23
Q ss_pred eeechhhhhhcC
Q 012698 405 AYIPFNRINERQ 416 (458)
Q Consensus 405 ~~vPl~~v~~~~ 416 (458)
..+|+..+++.+
T Consensus 464 ~~vPl~~~~n~e 475 (539)
T TIGR02477 464 GGVPLTMMMNME 475 (539)
T ss_pred ecccHHHHhChh
Confidence 779999988744
No 17
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=3.2e-73 Score=625.42 Aligned_cols=328 Identities=24% Similarity=0.337 Sum_probs=287.1
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CcccCChhHHhchhhcCccccccCCCcc--
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH-- 167 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGtsR~~~-- 167 (458)
+||||+||||||||||++||++++.+.+ .+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~~--~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 78 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAIY--VGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFR 78 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCccc
Confidence 4899999999999999999999998864 357999999999999999 9999999999999999999999999853
Q ss_pred ---hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHH-----------------HHHHcCCCeeEeeecccccCchh---
Q 012698 168 ---DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYE-----------------EIRQRGLKVAVAGIPKTIDNDIP--- 224 (458)
Q Consensus 168 ---~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~-----------------~~~~~~~~i~vvgIPkTIDNDi~--- 224 (458)
..++++++|++++||+||+||||||+++|+.|++ +..+++..++|||||||||||++
T Consensus 79 ~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 79 ERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 4689999999999999999999999999997765 33445668899999999999999
Q ss_pred -----------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHH
Q 012698 225 -----------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRL 293 (458)
Q Consensus 225 -----------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~ 293 (458)
++++||+++++|.|| +|+||||||||+|||||+++|||+ +||+|||||.||+.+.++++++.++++.
T Consensus 159 ~TiGfdTA~~~i~~aid~i~~ta~Sh-~R~fvvEvMGR~~G~LAl~aalA~-gad~iliPE~~~~~~~~~~i~~~l~~~~ 236 (745)
T TIGR02478 159 MTIGADSALHRICEAIDAISSTAQSH-QRAFVVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWEDQLCHKLKRNR 236 (745)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcc-CCEEEEEEcCccccHHHHHHHhcc-CCCEEEecCCCCCchHHHHHHHHHHHHH
Confidence 567899999999996 689999999999999999999999 8999999999999765567888787755
Q ss_pred Hh-CCcEEEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChh
Q 012698 294 KE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNAS 372 (458)
Q Consensus 294 ~~-~~~~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~ 372 (458)
+. ++|+|||||||+. |++||+.. ..+|++.|+++++. ++|...|||+|||++|+++
T Consensus 237 ~~gk~~~iIvvaEG~~--------------d~~g~~i~---~~~l~~~l~~~~g~------~~R~~~LGh~QRgg~Psa~ 293 (745)
T TIGR02478 237 KAGKRKNIVIVAEGAI--------------DRDLNPIT---SEDVKDVLVERLGL------DTRITVLGHVQRGGAPSAY 293 (745)
T ss_pred HcCCCcEEEEEeCCcc--------------cccCCccc---HHHHHHHHHHhcCC------ceEEeecChhhcCCCCCHH
Confidence 44 5899999999984 33455432 35788888887754 3566789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEeeechhhhhhcCCccCcc--HHHHHHHHHhcCCCCCCChHHHHHh
Q 012698 373 DNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVVIT--DRMWARVLSSTNQPSFLSANELAKF 447 (458)
Q Consensus 373 Dr~~a~~lG~~Av~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~k~v~~~--~~~~~~~l~~tgqp~~~~~~~~~~~ 447 (458)
||.+|++||..||+++++|++ ++||+++++++.++||.++.+++|.++.+ ...|...+...| ++|....++++.
T Consensus 294 Dr~la~~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~~~~~a~~~r~-~~f~~~~~~~~~ 372 (745)
T TIGR02478 294 DRILATRQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIKEKRFAEAMRLRG-REFVENLATFLF 372 (745)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHHhccHHHHHHhcC-HHHHHHHHHHHh
Confidence 999999999999999999997 99999999999999999999999999865 447888888866 688887766643
No 18
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=4.3e-73 Score=621.95 Aligned_cols=329 Identities=21% Similarity=0.303 Sum_probs=283.4
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CcccCChhHHhchhhcCccccccCCCcc
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGtsR~~~ 167 (458)
+++||||+||||||||||++||++|+.+.. .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~--~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~ 79 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIY--VGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKE 79 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHH--CCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCc
Confidence 357999999999999999999999998863 467999999999999999 7899999999999999999999999853
Q ss_pred -----hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHH-----------------HHHHHcCCCeeEeeecccccCchh-
Q 012698 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY-----------------EEIRQRGLKVAVAGIPKTIDNDIP- 224 (458)
Q Consensus 168 -----~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~-----------------~~~~~~~~~i~vvgIPkTIDNDi~- 224 (458)
++.+++++|++++||+||+||||||+++|++|. ++..+++..++|||||||||||++
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~g 159 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCG 159 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCC
Confidence 578999999999999999999999999999764 233444567899999999999999
Q ss_pred -------------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHH
Q 012698 225 -------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEK 291 (458)
Q Consensus 225 -------------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~ 291 (458)
++++|+++++||.|| +|+||||||||+|||||+++|||+ +||+|||||.||+.+.++++++.+++
T Consensus 160 TD~TiGfdTAl~~i~eaId~i~~tA~Sh-~R~fVVEvMGR~~G~LAl~aglA~-gAd~ilIPE~p~~~~~~~~i~~~l~~ 237 (762)
T cd00764 160 TDMTIGTDSALHRICEVVDAITTTAQSH-QRTFVLEVMGRHCGYLALVSGLAT-GADWIFIPERPPEDGWEDQMCRRLSE 237 (762)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhc-CCEEEEEECCCCchHHHHHHHhcc-CCCEEEecCCCCchhHHHHHHHHHHH
Confidence 567899999999997 589999999999999999999999 89999999999993334456677766
Q ss_pred HHHh-CCcEEEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCC
Q 012698 292 RLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSN 370 (458)
Q Consensus 292 r~~~-~~~~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~ 370 (458)
+.+. ++++|||||||+.+ ..|++.. +..|++.|+++++. ++|..+|||+|||+.|+
T Consensus 238 ~~~~gk~~~iIVVaEGa~d--------------~~g~~i~---~~~l~~~l~~~~g~------d~R~t~LGh~QRGG~Ps 294 (762)
T cd00764 238 HRSRGKRLNIIIVAEGAID--------------DQLKPIT---SEDVKDLVVERLGL------DTRVTTLGHVQRGGTPS 294 (762)
T ss_pred HHhcCCCcEEEEEeCCCcc--------------ccCCCcc---HHHHHHHHHHhcCC------CeeEeecChhhcCCCCC
Confidence 5544 58999999999852 2344322 35788888887754 45667899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEeeechhhhhhcCCccC--ccHHHHHHHHHhcCCCCCCChHHHH
Q 012698 371 ASDNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANELA 445 (458)
Q Consensus 371 a~Dr~~a~~lG~~Av~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~k~v~--~~~~~~~~~l~~tgqp~~~~~~~~~ 445 (458)
++||++|++||..||+++++|++ ++||++++++++++||.++...+|.|. .+...|.+.+...| ++|....+++
T Consensus 295 a~Dr~la~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~~~~~~~a~~lr~-~~f~~~~~~~ 373 (762)
T cd00764 295 AFDRILASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEKRFDEAAALRG-KSFDKNWNLY 373 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhhhhhHHHHHHhcc-hhHHHHHHHH
Confidence 99999999999999999999986 899999999999999999999999885 35667888877765 6887776666
Q ss_pred H
Q 012698 446 K 446 (458)
Q Consensus 446 ~ 446 (458)
+
T Consensus 374 ~ 374 (762)
T cd00764 374 K 374 (762)
T ss_pred H
Confidence 3
No 19
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=8.9e-73 Score=603.11 Aligned_cols=379 Identities=24% Similarity=0.337 Sum_probs=303.0
Q ss_pred hhhhCCCCCCCcCCCCCC-cccccccccccccchhHHHHHHhccCC-----CCcchhhhcCCCcccccCCCceEEEEEcc
Q 012698 26 LTDYIPDLPTYPNPLQFN-AAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGPRQKVYFVSDEVHACIVTC 99 (458)
Q Consensus 26 l~~~~p~~p~~~~~l~~n-~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~~iaIlts 99 (458)
-+.+.|.+|+. |++. +.++ ......|+.+...-.+.+.| .+...|....+.. ...+||||++|
T Consensus 10 r~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~-----~~~~~IgIl~s 78 (555)
T PRK07085 10 RLKYRPKLPKL---LQNDPGLIK---IVDGEFTESVADQDELAELFPNTYGLPYVTFVKGSESS-----SKPLKVGVILS 78 (555)
T ss_pred HHhCCCCCCHH---HhCCCCCce---EeecCCccccCCHHHHHHhChHhhCCccEEEEeCCCCc-----ccceEEEEECC
Confidence 35789999987 4321 1111 11222333333322223344 2445566643221 23579999999
Q ss_pred CCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCcc-ccccCCCc----chHHHHHH
Q 012698 100 GGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG----HDTSKIVD 174 (458)
Q Consensus 100 GG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGtsR~~----~~~~~i~~ 174 (458)
||||||||++|+++++++...+.+.+||||++||+||+++++++|+|+.++.|+++||+ +|||+|++ ++++++++
T Consensus 79 GG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~ 158 (555)
T PRK07085 79 GGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLE 158 (555)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHH
Confidence 99999999999999997766677889999999999999999999999999999999998 99999985 36899999
Q ss_pred HHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh----------------HHHHHHHHHHHhhh
Q 012698 175 SIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------------AQRAINAAHVEAES 238 (458)
Q Consensus 175 ~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----------------a~~ai~~i~~~A~s 238 (458)
+|++++||+||+||||||+++|++|++++++++++|+|||||||||||++ ++++|+++..+|.|
T Consensus 159 ~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s 238 (555)
T PRK07085 159 TVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALS 238 (555)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999996 45788999999999
Q ss_pred cCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCC----CCCccc-hhhHHHHHHHHHHh-CCcEEEEEeCCCCcchh
Q 012698 239 IENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPES----PFYLEG-EGGLYEFIEKRLKE-NGHMVIVIAEGAGQDLL 312 (458)
Q Consensus 239 ~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~----~~~l~~-~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~~ 312 (458)
+++||||||+|||+|||||++||||+ +||+|||||+ ++++++ .+.+++.|.+|..+ ++|+|||||||+.+.+.
T Consensus 239 ~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ip 317 (555)
T PRK07085 239 AKKYWHFIKLMGRSASHIALECALQT-HPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFIP 317 (555)
T ss_pred cCCcEEEEEECCCChHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchhcCc
Confidence 88899999999999999999999999 8999999999 555553 23445555666654 68999999999874111
Q ss_pred ------HH--------------------------HHhh-----------------hccccccCCccccch--HHHHHHHH
Q 012698 313 ------AE--------------------------SLQS-----------------MNQQDASGNKLLQDV--GLWISHKI 341 (458)
Q Consensus 313 ------~~--------------------------~~~~-----------------~~~~D~~G~~~l~~i--~~~L~~~I 341 (458)
.+ .++. ...+|++||++++++ +..|+++|
T Consensus 318 e~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~lV 397 (555)
T PRK07085 318 EMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMV 397 (555)
T ss_pred hHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHHH
Confidence 00 0000 024899999999988 88999999
Q ss_pred HHhhcccce-----eeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC--e-----Eeeech
Q 012698 342 KDHFARLHK-----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG--R-----HAYIPF 409 (458)
Q Consensus 342 ~e~~~~~~~-----~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mvgi~~~--~-----~~~vPl 409 (458)
+++++.... ..+..++..+||.|||+.||.||+.||+.||..|++++++|+||+|++++|- . +..+|+
T Consensus 398 ~~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl 477 (555)
T PRK07085 398 KKELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPL 477 (555)
T ss_pred HHHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccH
Confidence 888764211 2356677789999999999999999999999999999999999999999982 1 377999
Q ss_pred hhhhhcC
Q 012698 410 NRINERQ 416 (458)
Q Consensus 410 ~~v~~~~ 416 (458)
..+++.+
T Consensus 478 ~~~~n~e 484 (555)
T PRK07085 478 TMMMNME 484 (555)
T ss_pred HHHhcHH
Confidence 9988744
No 20
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=3.1e-72 Score=597.05 Aligned_cols=383 Identities=22% Similarity=0.292 Sum_probs=308.8
Q ss_pred hhhCCCCCCCcCCCCCC-cccccccccccccchhHHHHHHhccCC-----CCcchhhhcCCCcccccCCCceEEEEEccC
Q 012698 27 TDYIPDLPTYPNPLQFN-AAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGPRQKVYFVSDEVHACIVTCG 100 (458)
Q Consensus 27 ~~~~p~~p~~~~~l~~n-~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~~iaIltsG 100 (458)
..|.|.+|++ |++. ..++ ....+.|..+...-++.+.| .+...|........ .+..+||||++||
T Consensus 11 ~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~~~~~fp~~~~~p~~~~~~~~~~~~---~~~~~~IgIl~SG 81 (550)
T cd00765 11 INYTPKLPSV---LKGDFNNIK---IVEGPATSAAGDPDALAKLFPGTYGQPSVAFVPDQDAPS---SAPKLKIGIVLSG 81 (550)
T ss_pred HhcCCCCChh---hcCCccceE---EeecCcccccCCHHHHHHhChhhhCCcceEEeecCCccc---CCCCCEEEEECCC
Confidence 4689999998 5431 0111 22333344333322223444 25566766432211 1555899999999
Q ss_pred CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCcc-ccccCCCc----chHHHHHHH
Q 012698 101 GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG----HDTSKIVDS 175 (458)
Q Consensus 101 G~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGtsR~~----~~~~~i~~~ 175 (458)
||||||||+|+++++++...+++.+||||++||+||+++++++|++++++.|+++||+ +|||+|++ +++++++++
T Consensus 82 G~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~~ 161 (550)
T cd00765 82 GQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEET 161 (550)
T ss_pred CCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHHH
Confidence 9999999999999999876667889999999999999999999999999999999999 99999985 468999999
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh----------------HHHHHHHHHHHhhhc
Q 012698 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------------AQRAINAAHVEAESI 239 (458)
Q Consensus 176 l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----------------a~~ai~~i~~~A~s~ 239 (458)
|++++||+||+||||||+++|.+|++++++.+++|+|||||||||||++ ++++|++++.||.|+
T Consensus 162 l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s~ 241 (550)
T cd00765 162 AKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARST 241 (550)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999998 457889999999998
Q ss_pred CCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCC----Cccc-hhhHHHHHHHHHHh-CCcEEEEEeCCCCcchhH
Q 012698 240 ENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF----YLEG-EGGLYEFIEKRLKE-NGHMVIVIAEGAGQDLLA 313 (458)
Q Consensus 240 ~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~----~l~~-~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~~~ 313 (458)
++||+|||+|||+|||||++||||+ +||+|||||+++ ++++ ++.+++.|++|..+ ++|+|||||||+.+.+..
T Consensus 242 ~~~~~~VEvMGR~aG~LAl~~aLat-~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~ipe 320 (550)
T cd00765 242 GKYWHFVKLMGRSASHIALECALKT-HPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFIPE 320 (550)
T ss_pred CCcEEEEEeCCCchHHHHHHHHHhc-CCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCch
Confidence 8999999999999999999999999 899999999999 4332 23455666666654 689999999998761110
Q ss_pred ------------------------------------------------HHHhh--hccccccCCccccch--HHHHHHHH
Q 012698 314 ------------------------------------------------ESLQS--MNQQDASGNKLLQDV--GLWISHKI 341 (458)
Q Consensus 314 ------------------------------------------------~~~~~--~~~~D~~G~~~l~~i--~~~L~~~I 341 (458)
+++.. ...+|++||++++++ +..|++++
T Consensus 321 ~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~lV 400 (550)
T cd00765 321 VKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMV 400 (550)
T ss_pred HHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHHHH
Confidence 11211 225899999999988 99999999
Q ss_pred HHhhccc-ce----eeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------eEeeech
Q 012698 342 KDHFARL-HK----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPF 409 (458)
Q Consensus 342 ~e~~~~~-~~----~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mvgi~~~-------~~~~vPl 409 (458)
+++++.. .+ ..+......+||.|||+.||.||+.||+.||..|++++.+|+||+|++++|- ++..+||
T Consensus 401 ~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~~~vPl 480 (550)
T cd00765 401 ETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVPL 480 (550)
T ss_pred HHHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEecccH
Confidence 9887642 11 1244456679999999999999999999999999999999999999999972 2567999
Q ss_pred hhhhhcCCcc
Q 012698 410 NRINERQNQV 419 (458)
Q Consensus 410 ~~v~~~~k~v 419 (458)
..+++.+|+.
T Consensus 481 ~~~mn~e~~~ 490 (550)
T cd00765 481 TMLMNMERRH 490 (550)
T ss_pred HHHhcccccc
Confidence 9998865543
No 21
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=5.7e-71 Score=592.54 Aligned_cols=344 Identities=22% Similarity=0.319 Sum_probs=294.0
Q ss_pred Ccchhhh---cCCCcccccCCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhH
Q 012698 72 RGTHFRR---AGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKV 148 (458)
Q Consensus 72 ~~~~f~~---~~~~~~~~~~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~ 148 (458)
+...|.. ++|+.+.++.+..+|||||||||||||||+||+++++++...+++.+||||++||+||+++++++|++++
T Consensus 57 p~~~~~~~~~~~~~~~~~~~~~~~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~ 136 (610)
T PLN03028 57 PLAHFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDV 136 (610)
T ss_pred cceEEecccccCccccccCCCcccEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHH
Confidence 5566765 3478788777878999999999999999999999999998766678999999999999999999999999
Q ss_pred HhchhhcCcc-ccccCCCc----chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCch
Q 012698 149 VNDIHKRGGT-ILGTSRGG----HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (458)
Q Consensus 149 v~~~~~~GGs-~LGtsR~~----~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (458)
++.|+++||+ +|||+|.+ +++++++++|++++||+||+||||||+++|.+|++++++.+.+|+|||||||||||+
T Consensus 137 v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL 216 (610)
T PLN03028 137 LSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDL 216 (610)
T ss_pred HHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCC
Confidence 9999999998 89999964 368999999999999999999999999999999999999999999999999999999
Q ss_pred h----------------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCC-CC---ccc-h
Q 012698 224 P----------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP-FY---LEG-E 282 (458)
Q Consensus 224 ~----------------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~-~~---l~~-~ 282 (458)
+ ++++|+++++||.|+++||||||+|||+|||||++||||+ +||+|||||+. ++ +.. +
T Consensus 217 ~~~~td~s~GFdTA~k~~ae~I~ni~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat-~pniilI~EE~~~~~~tL~~iv 295 (610)
T PLN03028 217 KNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQS-HPNMVILGEEVAASKLTLFDIT 295 (610)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcccccccccchHH
Confidence 6 4678999999999988899999999999999999999999 89999999964 32 222 3
Q ss_pred hhHHHHHHHHHHh-CCcEEEEEeCCCCcchhH------H-------------------------------HHh--hhccc
Q 012698 283 GGLYEFIEKRLKE-NGHMVIVIAEGAGQDLLA------E-------------------------------SLQ--SMNQQ 322 (458)
Q Consensus 283 ~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~~~------~-------------------------------~~~--~~~~~ 322 (458)
+.+++.|++|+++ ++|+|||||||+.+.+.. + ++. ....+
T Consensus 296 ~~i~~~I~~r~~~gk~~gvIvVsEGlie~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~ 375 (610)
T PLN03028 296 KQICDAVQARAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHP 375 (610)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCCccccCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhcc
Confidence 5788889999854 689999999998754111 0 000 01347
Q ss_pred cccCCccccc--hHHHHHHHHHHhhccccee------eeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCc
Q 012698 323 DASGNKLLQD--VGLWISHKIKDHFARLHKM------AINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTG 394 (458)
Q Consensus 323 D~~G~~~l~~--i~~~L~~~I~e~~~~~~~~------~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg 394 (458)
|++||+++++ .+.+|+++++++++.+.+. .+......+||.|||+.||.||+.||+.||..|++++.+|+||
T Consensus 376 D~~G~~qls~i~te~lL~~lV~~eL~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG 455 (610)
T PLN03028 376 ESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNG 455 (610)
T ss_pred CCCCCeeecchhHHHHHHHHHHHHHHHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999998 6678888888877644331 3444445799999999999999999999999999999999999
Q ss_pred eEEEEECC-------eEeeechhhhhhcC
Q 012698 395 FTVGPVNG-------RHAYIPFNRINERQ 416 (458)
Q Consensus 395 ~mvgi~~~-------~~~~vPl~~v~~~~ 416 (458)
+|++++|- ++..+||..+++.+
T Consensus 456 ~M~~I~nl~~~~~~w~~~~vPl~~~m~~~ 484 (610)
T PLN03028 456 YMATVTNLKSPVNKWRCGAAPITAMMSVK 484 (610)
T ss_pred eEEEEEeCCCCCeEEEEcccCHHHHhhHH
Confidence 99999972 24679999987643
No 22
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=1e-70 Score=586.54 Aligned_cols=379 Identities=21% Similarity=0.242 Sum_probs=302.0
Q ss_pred hhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHhccCC-----CCcchhhhcC-CCcccccCCCceEEEEEccC
Q 012698 27 TDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG-PRQKVYFVSDEVHACIVTCG 100 (458)
Q Consensus 27 ~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~-~~~~~~~~~~~~~iaIltsG 100 (458)
+.+.|.+|.. |+++ +. ....+.|..+...-.+.+.| .+...|.+.. +..+ .+..+||||||||
T Consensus 37 ~~~~p~lp~~---l~~~--~~---~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~---~~~~~~IGIv~sG 105 (568)
T PLN02251 37 IDHALPLPSV---LKGP--FK---IVDGPPSSAAGNPEEIAKLFPNLFGQPSVMLVPSQADALS---SDQKLKIGVVLSG 105 (568)
T ss_pred HhCCCCCChh---hcCc--eE---EEecCcccccCCHHHHHHhChHhhCCceEEEeeccCcccc---ccccceEEEECcC
Confidence 3688999987 5431 11 11222233332222223334 2455566521 1111 1344799999999
Q ss_pred CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCcc-ccccCCCc----chHHHHHHH
Q 012698 101 GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG----HDTSKIVDS 175 (458)
Q Consensus 101 G~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGtsR~~----~~~~~i~~~ 175 (458)
|||||||+||+++++++...+++.+||||++||+||+++++++|++++++.|+++||+ +|||+|++ +++++++++
T Consensus 106 G~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~~ 185 (568)
T PLN02251 106 GQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEET 185 (568)
T ss_pred CCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHHH
Confidence 9999999999999999976667789999999999999999999999999999999998 99999984 468999999
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh----------------HHHHHHHHHHHhhhc
Q 012698 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------------AQRAINAAHVEAESI 239 (458)
Q Consensus 176 l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----------------a~~ai~~i~~~A~s~ 239 (458)
|++++||+||+||||||+++|.+|++++++.+.+|+|||||||||||++ ++++|++++.||.|+
T Consensus 186 l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da~S~ 265 (568)
T PLN02251 186 ATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARST 265 (568)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999997 457899999999999
Q ss_pred CCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCC----ccch-hhHHHHHHHHHHh-CCcEEEEEeCCCCcch--
Q 012698 240 ENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFY----LEGE-GGLYEFIEKRLKE-NGHMVIVIAEGAGQDL-- 311 (458)
Q Consensus 240 ~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~----l~~~-~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~-- 311 (458)
+++|+|||+|||+|||||++||||+ +||+|||||++++ ++++ +.+++.|++|..+ ++|+||||+||+.+..
T Consensus 266 ~k~~~~VevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie~ipe 344 (568)
T PLN02251 266 GKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLIDFIPE 344 (568)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHhh-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCch
Confidence 8788999999999999999999999 8999999999554 4322 2355666777655 6899999999994211
Q ss_pred ----hHH---------------------------------HHh--hhccccccCCccccc--hHHHHHHHHHHhhcccce
Q 012698 312 ----LAE---------------------------------SLQ--SMNQQDASGNKLLQD--VGLWISHKIKDHFARLHK 350 (458)
Q Consensus 312 ----~~~---------------------------------~~~--~~~~~D~~G~~~l~~--i~~~L~~~I~e~~~~~~~ 350 (458)
+.+ .+. ...++|++||+++++ .+..|+++++++++....
T Consensus 345 ~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~~rk~ 424 (568)
T PLN02251 345 VQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQ 424 (568)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHhhhcc
Confidence 000 000 013489999999998 678999999888764211
Q ss_pred -----eeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------eEeeechhhhhhcCC
Q 012698 351 -----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINERQN 417 (458)
Q Consensus 351 -----~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mvgi~~~-------~~~~vPl~~v~~~~k 417 (458)
..|..+...+||.|||+.||.||+.||+.||..|++++.+|+||+|++++|. ++..+||..+++.++
T Consensus 425 ~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~mn~e~ 503 (568)
T PLN02251 425 EGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLMDVER 503 (568)
T ss_pred ccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHhhhhh
Confidence 1245667789999999999999999999999999999999999999999983 245699999887443
No 23
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=7.3e-68 Score=594.03 Aligned_cols=324 Identities=23% Similarity=0.295 Sum_probs=277.0
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCcc-ccccCCCc---
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG--- 166 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGtsR~~--- 166 (458)
.+|||||||||||||||+||+++++++...+.+.+||||++||+||+++++++|+++.|+.|+++||| +|||+|++
T Consensus 102 ~krIGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ 181 (1328)
T PTZ00468 102 ARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIET 181 (1328)
T ss_pred CCEEEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCC
Confidence 37999999999999999999999998865566789999999999999999999999999999999997 99999985
Q ss_pred -chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh----------------HHHHH
Q 012698 167 -HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------------AQRAI 229 (458)
Q Consensus 167 -~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----------------a~~ai 229 (458)
+++++++++|++++||+||+||||||+++|.+|+++++++|++|+|||||||||||++ ++++|
T Consensus 182 ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I 261 (1328)
T PTZ00468 182 EEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQI 261 (1328)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999997 45788
Q ss_pred HHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccc-----hhhHHHHHHHHHHh-CCcEEEEE
Q 012698 230 NAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG-----EGGLYEFIEKRLKE-NGHMVIVI 303 (458)
Q Consensus 230 ~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~-----~~~~~~~i~~r~~~-~~~~vVvV 303 (458)
++++.+|.|+++||||||+|||+|||||++||||+ +||+|||||++++.+. ++.+++.|.+|++. ++|+||||
T Consensus 262 ~nl~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAt-ganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvV 340 (1328)
T PTZ00468 262 GSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQT-RANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLL 340 (1328)
T ss_pred HHHHHHhhhcCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999978899999999999999999999999 8999999999987432 23455556666554 58999999
Q ss_pred eCCCCcch------h----------------H---------------HHHhh--hccccccCCccccchH--HHHHHHHH
Q 012698 304 AEGAGQDL------L----------------A---------------ESLQS--MNQQDASGNKLLQDVG--LWISHKIK 342 (458)
Q Consensus 304 aEGa~~~~------~----------------~---------------~~~~~--~~~~D~~G~~~l~~i~--~~L~~~I~ 342 (458)
|||+.+.. + . +.+.. ..++|++||+++++++ .+|+++++
T Consensus 341 sEGliefIpe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~ 420 (1328)
T PTZ00468 341 PEGLIEFIPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAK 420 (1328)
T ss_pred cCCccccccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHH
Confidence 99986311 0 0 00010 1358999999999887 89999988
Q ss_pred Hhhccccee--eeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------Eeeechhhhh
Q 012698 343 DHFARLHKM--AINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR-------HAYIPFNRIN 413 (458)
Q Consensus 343 e~~~~~~~~--~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mvgi~~~~-------~~~vPl~~v~ 413 (458)
+++...... .+.+++-.+||.|||+.||.||+.||+.||..|++++.+|+||+|+++++.+ +..+||..++
T Consensus 421 ~~L~~~~~~~~~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mm 500 (1328)
T PTZ00468 421 EKLEEVKKDYILDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMM 500 (1328)
T ss_pred HHHHHhhcccccCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHh
Confidence 877422111 1234445799999999999999999999999999999999999999999842 4669999987
Q ss_pred hc
Q 012698 414 ER 415 (458)
Q Consensus 414 ~~ 415 (458)
+.
T Consensus 501 n~ 502 (1328)
T PTZ00468 501 NI 502 (1328)
T ss_pred hH
Confidence 74
No 24
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=1.3e-68 Score=532.75 Aligned_cols=261 Identities=35% Similarity=0.544 Sum_probs=228.3
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-----
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG----- 166 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~----- 166 (458)
+||||+||||||||||++|+++++++.+ .+.+||||++||+||+++++++|+|+++++|.++|||+|||+|++
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~ 78 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR--RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDP 78 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH--TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh--cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccch
Confidence 5899999999999999999999998863 457999999999999999999999999999999999999999985
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHH
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAA 232 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i 232 (458)
++.++++++|++++||+||+|||||||++|++|++++. ++|||||||||||++ ++++++++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~i 153 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDNI 153 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHHH
Confidence 24678999999999999999999999999999997753 899999999999999 45788999
Q ss_pred HHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012698 233 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 311 (458)
Q Consensus 233 ~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~ 311 (458)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.|++++ .+++.|++++++ +++++||||||+....
T Consensus 154 ~~~a~s~-~rv~ivEvmGr~~G~LAl~~ala~-~a~~ilipE~~~~~~---~~~~~i~~~~~~~k~~~iVvvsEG~~~~~ 228 (282)
T PF00365_consen 154 KTTARSH-NRVFIVEVMGRNAGWLALAAALAT-GADLILIPEEPFDLD---ELLDDIKKRYERGKRYGIVVVSEGAKDGQ 228 (282)
T ss_dssp HHHHHHS-TEEEEEEESSTTSTHHHHHHHHHH-TSSEEEBTTSHHHHH---HHHHHHHHHHHTTSSEEEEEEETTSBSSH
T ss_pred HHhhccc-CCceEEEeCCCCcCHHHHHHHhcc-CCCEEEEeccccchH---HHHHHhhhhhcccCceEEEEecccccccc
Confidence 9999886 689999999999999999999999 899999999998877 799999998877 4789999999996510
Q ss_pred hHHHHhhhccccccCCccccch-HHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 012698 312 LAESLQSMNQQDASGNKLLQDV-GLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVA 390 (458)
Q Consensus 312 ~~~~~~~~~~~D~~G~~~l~~i-~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~ 390 (458)
++ .+.+.+..++.++ +++|+..|||+|||+.|+++||++|++||.+||+++++
T Consensus 229 --------------------~i~~~~~~~~~~~~~~------~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 229 --------------------PISSEFIKELLEEGLG------FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp --------------------BHHHHHHHHHHHHTTT------SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------------cccccccccccccccc------cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 11 1234444444333 46788899999999999999999999999999999874
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.6e-66 Score=583.92 Aligned_cols=324 Identities=28% Similarity=0.357 Sum_probs=273.5
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCcc-ccccCCCc--
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG-- 166 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGtsR~~-- 166 (458)
..+||||++|||||||||++|+++++++.....+++||||++||+||+++++++|+|.++++|+++||+ +|||+|.+
T Consensus 176 ~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~ 255 (1419)
T PTZ00287 176 NVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVR 255 (1419)
T ss_pred CceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCC
Confidence 347999999999999999999999999865556789999999999999999999999999999999997 89999974
Q ss_pred --chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh----------------HHHH
Q 012698 167 --HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------------AQRA 228 (458)
Q Consensus 167 --~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----------------a~~a 228 (458)
+++++++++|++++||+||+||||||+++|.+|++++.+.+++|+||||||||||||+ ++++
T Consensus 256 ~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~ 335 (1419)
T PTZ00287 256 NKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEV 335 (1419)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999999998 3456
Q ss_pred HHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCC----Cccch-hhHHHHHHHHHHh-CCcEEEE
Q 012698 229 INAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF----YLEGE-GGLYEFIEKRLKE-NGHMVIV 302 (458)
Q Consensus 229 i~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~----~l~~~-~~~~~~i~~r~~~-~~~~vVv 302 (458)
|++++.++.+++++|||||||||+|||||++||||+ +||+|||||++| +++++ +.+++.+.+|+.. ++|+|||
T Consensus 336 I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAt-gAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIv 414 (1419)
T PTZ00287 336 IGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQT-RPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVIL 414 (1419)
T ss_pred HHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhc-CCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 778888888877889999999999999999999999 899999999855 44422 1234445555544 5899999
Q ss_pred EeCCCCcchhH------H-------------HH----------------hhhccccccCCccccchHH--HHHHHHHHhh
Q 012698 303 IAEGAGQDLLA------E-------------SL----------------QSMNQQDASGNKLLQDVGL--WISHKIKDHF 345 (458)
Q Consensus 303 VaEGa~~~~~~------~-------------~~----------------~~~~~~D~~G~~~l~~i~~--~L~~~I~e~~ 345 (458)
||||+.+.+.. + .. +....+|++||+++++++. .|++++++++
T Consensus 415 VsEGlie~Ipe~~~Li~eln~~l~~g~~~~~~~~~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L 494 (1419)
T PTZ00287 415 IPEGLIEFVPEMKILIGELNVILKEGPFDASKLKHSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESEL 494 (1419)
T ss_pred EeCCcchhcchHHHHHHHhhhhcccCcchhhhhhhhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHH
Confidence 99998761110 0 00 0012589999999997654 6777777665
Q ss_pred ccc--ceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------eEeeechhhhhh
Q 012698 346 ARL--HKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINE 414 (458)
Q Consensus 346 ~~~--~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mvgi~~~-------~~~~vPl~~v~~ 414 (458)
... ....+..+...+||+|||+.||.+|+.||+.||..|++++.+|+||+|+++++- ++..+||..++.
T Consensus 495 ~~~~~~g~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~ 572 (1419)
T PTZ00287 495 AKLNDNNLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMH 572 (1419)
T ss_pred HHHHhcCCCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhh
Confidence 422 123567788899999999999999999999999999999999999999999972 246699999877
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.2e-59 Score=528.91 Aligned_cols=320 Identities=18% Similarity=0.176 Sum_probs=266.5
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCcccc-ccCCCc--
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTIL-GTSRGG-- 166 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~L-GtsR~~-- 166 (458)
.++|||||||||||||||+|||++++++...+ +. ++| ++||.||+++++++|+.++|++|+++|||+| ||+|..
T Consensus 835 ~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~-g~-~~g-f~G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f 911 (1419)
T PTZ00287 835 FEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLK-GV-CIA-FYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSL 911 (1419)
T ss_pred CCcEEEEECcCCCcHhHHHHHHHHHHHHHHhC-Ce-EEE-EeCchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCC
Confidence 45899999999999999999999999986543 32 455 5599999999999999999999999999999 999963
Q ss_pred ---chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh----------------HHH
Q 012698 167 ---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------------AQR 227 (458)
Q Consensus 167 ---~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----------------a~~ 227 (458)
+.+++++++|++++||+||+||||||+++|..|+|++.+.|++++|||||||||||++ +++
T Consensus 912 ~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~se 991 (1419)
T PTZ00287 912 FDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYAS 991 (1419)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999996 568
Q ss_pred HHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccc-----hhhHHHHHHHHHHh-CCcEEE
Q 012698 228 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG-----EGGLYEFIEKRLKE-NGHMVI 301 (458)
Q Consensus 228 ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~-----~~~~~~~i~~r~~~-~~~~vV 301 (458)
+|++++++|.|+++||||||||||+|||||++||||+ +||+|||||++++-+. ++.+++.|++|.+. ++|+||
T Consensus 992 aI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLat-gAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygIV 1070 (1419)
T PTZ00287 992 LIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQT-HPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTV 1070 (1419)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhc-CCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999999999998889999999999999999999999 8999999999987221 23577777777776 589999
Q ss_pred EEeCCCCcch------hHH-------------------------------------------------H-----------
Q 012698 302 VIAEGAGQDL------LAE-------------------------------------------------S----------- 315 (458)
Q Consensus 302 vVaEGa~~~~------~~~-------------------------------------------------~----------- 315 (458)
||+||..+.+ +.+ .
T Consensus 1071 lV~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~~ 1150 (1419)
T PTZ00287 1071 LIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLA 1150 (1419)
T ss_pred EEcCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHHH
Confidence 9999964321 100 0
Q ss_pred --------Hh-hhccccccCCccccch--HHHHHHHHHHhhcccce-----eeeeeeeeCCCccccCCCCChhhHHHHHH
Q 012698 316 --------LQ-SMNQQDASGNKLLQDV--GLWISHKIKDHFARLHK-----MAINLKYIDPTYMIRAIPSNASDNVYCTL 379 (458)
Q Consensus 316 --------~~-~~~~~D~~G~~~l~~i--~~~L~~~I~e~~~~~~~-----~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~ 379 (458)
+. +.-.+|. ||.+++.| ...|++++++++..+.. ..|...+.-+||..||+.||-||+.||+.
T Consensus 1151 lf~slP~~i~~qLl~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~HffGYegR~~~PS~FD~~y~Y~ 1229 (1419)
T PTZ00287 1151 LLKTFPQFIIKELLHVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLAYS 1229 (1419)
T ss_pred HHHhccHHHHHHHhccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeeccccccccCCCCccchHHHHH
Confidence 00 0123677 88888754 35677777766542211 13444445699999999999999999999
Q ss_pred HHHHHHHHHHcCCCceEEEEECC-------eEeeechhhhhh
Q 012698 380 LAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINE 414 (458)
Q Consensus 380 lG~~Av~~~~~G~tg~mvgi~~~-------~~~~vPl~~v~~ 414 (458)
||..|..++..|.||+|++++|- +...+||..++.
T Consensus 1230 LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ 1271 (1419)
T PTZ00287 1230 YGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMK 1271 (1419)
T ss_pred HHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhc
Confidence 99999999999999999999972 356799988776
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=2e-51 Score=461.74 Aligned_cols=321 Identities=15% Similarity=0.181 Sum_probs=257.1
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCc--ccCC----hhHHhchhhcCccccccC-
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT--INLT----PKVVNDIHKRGGTILGTS- 163 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~--~~L~----~~~v~~~~~~GGs~LGts- 163 (458)
.+++|||..|||+||+|+||.+++.++.+ .+ |+||++||.||++++. +.|+ .++++.|+++||++|+++
T Consensus 675 ~~~vgIv~~g~~aPG~NnVI~g~~~~~~~-~g---vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~~ 750 (1328)
T PTZ00468 675 CESLGLILSCLSTPGTQNVICGLVNGLPS-LK---QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNGV 750 (1328)
T ss_pred ceeEEEEecCCCCccHHHHHHHHHHHHHh-CC---cEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeeccc
Confidence 37999999999999999999999998863 22 9999999999999974 4566 578999999999999999
Q ss_pred ---------CCc---------c---------------hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC---
Q 012698 164 ---------RGG---------H---------------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG--- 207 (458)
Q Consensus 164 ---------R~~---------~---------------~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~--- 207 (458)
|+. + +.+.+.+.|++++||+||+||||||+++|..|+|++.+++
T Consensus 751 ~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~ 830 (1328)
T PTZ00468 751 EIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNG 830 (1328)
T ss_pred cccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhcccc
Confidence 631 1 3478999999999999999999999999999999988765
Q ss_pred --CCeeEeeecccccCchh----------------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCce
Q 012698 208 --LKVAVAGIPKTIDNDIP----------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDC 269 (458)
Q Consensus 208 --~~i~vvgIPkTIDNDi~----------------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ 269 (458)
..|+|||||||||||++ +.++|.++..||.|+++||||||+|||+|||||+++|||+ +||+
T Consensus 831 ~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLat-gani 909 (1328)
T PTZ00468 831 MKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQT-HPNL 909 (1328)
T ss_pred ccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhh-CCCE
Confidence 46999999999999997 4567856666666667899999999999999999999999 8999
Q ss_pred EecCCCC--------------CCccc-hhhHHHHHHHHHHh-CCcEEEEEeCCCCcch---------hHHH---------
Q 012698 270 CLIPESP--------------FYLEG-EGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL---------LAES--------- 315 (458)
Q Consensus 270 ilIPE~~--------------~~l~~-~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~---------~~~~--------- 315 (458)
|+|||++ ++++. ++.+++.|.+|.+. ++|++||||||+.+.+ +.+.
T Consensus 910 vlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e~~a~~~~~~~ 989 (1328)
T PTZ00468 910 VVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSRFSTQNLCNAS 989 (1328)
T ss_pred EEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHHHhhhcccccc
Confidence 9999997 44432 23566777777765 5799999999975433 1110
Q ss_pred ------------------------------HhhhccccccCCccccch--HHHHHHHHHHhhcccce-----eeeeeeee
Q 012698 316 ------------------------------LQSMNQQDASGNKLLQDV--GLWISHKIKDHFARLHK-----MAINLKYI 358 (458)
Q Consensus 316 ------------------------------~~~~~~~D~~G~~~l~~i--~~~L~~~I~e~~~~~~~-----~~~~l~~i 358 (458)
+...-..|..||++++.| ...|++++++++..+.. ..|..-+.
T Consensus 990 ~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~dgn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~f~~~~H 1069 (1328)
T PTZ00468 990 NSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSRKICDVRTEIILSALVQKELKFRRSKNKIKNGMNPVCF 1069 (1328)
T ss_pred chhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccCCCcchhhhhHHHHHHHHHHHHHHHHHhcCccccccceeec
Confidence 000001344488888755 35677777766542211 13444455
Q ss_pred CCCccccCCCCChhhHHHHHHHHHHHHHHHHcCC-CceEEEEECC-------eEeeechhhhhhcC
Q 012698 359 DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY-TGFTVGPVNG-------RHAYIPFNRINERQ 416 (458)
Q Consensus 359 ~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~-tg~mvgi~~~-------~~~~vPl~~v~~~~ 416 (458)
-+||..||+.||-||+.||+.||..|..++..|. ||+|.+++|- +...+||..++.-+
T Consensus 1070 ffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~~~ 1135 (1328)
T PTZ00468 1070 SFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTLN 1135 (1328)
T ss_pred cccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhCcc
Confidence 6999999999999999999999999999999999 6999999983 35679999887743
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-47 Score=406.25 Aligned_cols=454 Identities=38% Similarity=0.474 Sum_probs=397.6
Q ss_pred CCCCCCceeecCCC------CcccccccchhhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHh--ccCCCCcc
Q 012698 3 HSGNLQLKVVNGDA------GYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVV--HKDSPRGT 74 (458)
Q Consensus 3 ~~~~~~~~~~~~~~------~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~--~~~~~~~~ 74 (458)
|-|.....|.||+. .+..|+..+...+.|+.|.+++++..++.++.+...++..++.|...+.. .....+..
T Consensus 24 ~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl 103 (666)
T KOG2440|consen 24 YRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSL 103 (666)
T ss_pred ccCceEEEEecccccccccccchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccch
Confidence 34566778999998 67789999999999999999999999999999999999999999887652 22234567
Q ss_pred hhhhcCCCcccccCCCceEEEEEccCCCCcchhHHHHHHHHHHH-HhcCCcEEEEEccc----------------ccccc
Q 012698 75 HFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLY-HMYGVSKILGIDGG----------------YRGFY 137 (458)
Q Consensus 75 ~f~~~~~~~~~~~~~~~~~iaIltsGG~apGmNavIr~~v~~~~-~~~~~~~v~Gi~~G----------------~~GL~ 137 (458)
.|.+.+|+++.+|.+..+|++|+||||.|||+|.+|+++|-.+. ..|+..+++|+.-+ ++||+
T Consensus 104 ~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv 183 (666)
T KOG2440|consen 104 TGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFV 183 (666)
T ss_pred hHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEE
Confidence 78999999999999999999999999999999999999988774 45777788888777 88999
Q ss_pred cCCc--ccCChhHHhchhhcCccccccCCCcch---HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeE
Q 012698 138 SKNT--INLTPKVVNDIHKRGGTILGTSRGGHD---TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAV 212 (458)
Q Consensus 138 ~~~~--~~L~~~~v~~~~~~GGs~LGtsR~~~~---~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~v 212 (458)
...+ ..+....+.+|+..++++++++|..++ +.++++..++.++|.+|||||+++.++|..++++++++.++.-+
T Consensus 184 ~evmgr~cg~lalv~~ia~~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv 263 (666)
T KOG2440|consen 184 AEVMGRHCGYLALVAAIAGGADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLV 263 (666)
T ss_pred eeehhhccchHHHHHHhhcCCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheee
Confidence 8887 667778899999999999999999776 88999999999999999999999999999999999999999999
Q ss_pred eeecccccCchh----------------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCC-
Q 012698 213 AGIPKTIDNDIP----------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPES- 275 (458)
Q Consensus 213 vgIPkTIDNDi~----------------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~- 275 (458)
+++||||||||+ +++||++++.+|.|+-++..||++|||+|+++|++++||++..|+|++||.
T Consensus 264 ~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr 343 (666)
T KOG2440|consen 264 VGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELR 343 (666)
T ss_pred ecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhc
Confidence 999999999998 568999999999999999999999999999999999999988999999999
Q ss_pred ------------------------CCCcc--chhhHHHHHHHHHHhCCcEEEEEeCCCCcchhHHHHhhh-ccccccCCc
Q 012698 276 ------------------------PFYLE--GEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSM-NQQDASGNK 328 (458)
Q Consensus 276 ------------------------~~~l~--~~~~~~~~i~~r~~~~~~~vVvVaEGa~~~~~~~~~~~~-~~~D~~G~~ 328 (458)
||..+ .--..+.....++....|.+++++|++++.+........ -.+|++++.
T Consensus 344 ~~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~ 423 (666)
T KOG2440|consen 344 GRKFTLNLNTYKILDVVDPRAEQDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGEL 423 (666)
T ss_pred chhhhhhhhHHhhhhccccccccCCCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhh
Confidence 77665 212245667778888889999999999886554332211 225999999
Q ss_pred cccchHHHHHHHHHHhhcccce-eeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCeEeee
Q 012698 329 LLQDVGLWISHKIKDHFARLHK-MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYI 407 (458)
Q Consensus 329 ~l~~i~~~L~~~I~e~~~~~~~-~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mvgi~~~~~~~v 407 (458)
.+.|++.|+.+-.++++..... ....++||+|.|+.|..+.+..|-.+++.+++.++|..+++++++.+++++....+.
T Consensus 424 ~~~dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~s 503 (666)
T KOG2440|consen 424 IWKDVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYS 503 (666)
T ss_pred HHHHhhcccccCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeec
Confidence 9999999999998888653321 356899999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcCCccCccHHHHHHHHHhcCCCCCCChHHHHHhhhcCCCCCC
Q 012698 408 PFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKPSCPV 456 (458)
Q Consensus 408 Pl~~v~~~~k~v~~~~~~~~~~l~~tgqp~~~~~~~~~~~~~~~~~~~~ 456 (458)
|.-..+.....+|.....|.++.+.|.||+|.++.+...-..+.+.|+.
T Consensus 504 nnvpgt~~s~gvdt~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gy 552 (666)
T KOG2440|consen 504 NNVPGTEFSLGVDTALNAWARVCDSTKQSAFGTKRRVFVVETMGGYSGY 552 (666)
T ss_pred CCccccccccccchhHhhhhhhhhhccCCcccccceeEEEEecCCCccc
Confidence 9988888899999999999999999999999999888777777888853
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-43 Score=374.63 Aligned_cols=335 Identities=19% Similarity=0.202 Sum_probs=292.6
Q ss_pred ccccccchhhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHhccCC-----CCcchhhhcC----------CCc
Q 012698 19 VLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG----------PRQ 83 (458)
Q Consensus 19 ~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~----------~~~ 83 (458)
+.|||.|+++.+|+ .+.+|+++|+|+++++..|..+..++. .++| +|+.+|..++ |+.
T Consensus 292 g~eAI~a~l~~a~s------~~~g~~~VRlmgr~~~~it~~~tla~~-~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~~ 364 (666)
T KOG2440|consen 292 GQEAINAALEEAES------AENGNGIVRLMGRESVHITLEATLASR-DKDFCLAPELRGRKFTLNLNTYKILDVVDPRA 364 (666)
T ss_pred HHHHHHHHHhhchh------hcccceeEEehhHHHHHHHHHHHHhcC-ccceeehhhhcchhhhhhhhHHhhhhcccccc
Confidence 37899999997766 589999999999999999999999987 7777 5888888876 222
Q ss_pred ccccCCCc--eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccc
Q 012698 84 KVYFVSDE--VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILG 161 (458)
Q Consensus 84 ~~~~~~~~--~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LG 161 (458)
.. .|.. +++++++.|.++.|||++++++++.+. ..++++|++.+||+||.++...++.|.+|..|..+||+.+|
T Consensus 365 ~~--~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~--~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~~g 440 (666)
T KOG2440|consen 365 EQ--DPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAE--GAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSALG 440 (666)
T ss_pred cc--CCCCceeccceeeechhhhHHHHHHHHHHHHhh--hcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchhhe
Confidence 11 1222 569999999999999999999999885 57789999999999999988999999999999999999999
Q ss_pred cCCCc---chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCCeeEeeecccccCchh-------------
Q 012698 162 TSRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIP------------- 224 (458)
Q Consensus 162 tsR~~---~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~------------- 224 (458)
|.|.. .+++.|..+|++++|++|+++||+.++.+...|...+..| +|++++|-||.|+.|+++
T Consensus 441 tk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt~~N 520 (666)
T KOG2440|consen 441 TKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDTALN 520 (666)
T ss_pred ecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccchhHh
Confidence 99973 3899999999999999999999999999999998877666 899999999999999999
Q ss_pred -HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhC-CcEEEE
Q 012698 225 -AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIV 302 (458)
Q Consensus 225 -a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~-~~~vVv 302 (458)
.++.++.+.+.|..+++++|++|+||.+|||||++++|+. +++.+|+||++|+++++++..+++..+++.. ...+++
T Consensus 521 ~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~-ga~~a~v~e~~~~~~~l~~~~~~~~~k~~~~~~~~l~~ 599 (666)
T KOG2440|consen 521 AWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAP-GADAAYVPEEGFSIKDLRENAEHLAEKMRYGNPRGLQL 599 (666)
T ss_pred hhhhhhhhccCCcccccceeEEEEecCCCccceeccccccc-cccccccccccccHHHHHHHHHHHHHHhhhcCCCceEE
Confidence 3455666777888888999999999999999999999999 8999999999999999999999998888764 455999
Q ss_pred EeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHH
Q 012698 303 IAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQ 382 (458)
Q Consensus 303 VaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~ 382 (458)
.+||+...+.+. +|.+.+.+.-+. .+..|+..|||+|+||.|+++||.++++||.
T Consensus 600 r~e~a~~~~~t~---------------------~~~~~~~~~~~~----~f~~~~~~~gh~qqgg~ps~~dr~~~~~m~~ 654 (666)
T KOG2440|consen 600 RNEGADANYTTL---------------------FLENIYSEEGKG----KFQARTNVLGHIQQGGSPSPFDRNMGTKMAV 654 (666)
T ss_pred eCCCcchhhhHH---------------------HHHHHHhhhccc----ccceeeccccceecCCCCChHHHHHHHHHHH
Confidence 999999877643 566666554321 3677888999999999999999999999999
Q ss_pred HHHHHHHc
Q 012698 383 SAVHGAVA 390 (458)
Q Consensus 383 ~Av~~~~~ 390 (458)
+|++++..
T Consensus 655 ~a~~~~~~ 662 (666)
T KOG2440|consen 655 KAIELITI 662 (666)
T ss_pred HHHHHHHh
Confidence 99999864
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=93.10 E-value=0.16 Score=50.36 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCC------cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 169 TSKIVDSIQDRGI------NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 169 ~~~i~~~l~~~~I------~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
.+..-+..++|++ |.+++||||||+-.|..... ...+||+||-.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~ 57 (246)
T PRK04761 8 QAALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR 57 (246)
T ss_pred HHHHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC
Confidence 3344455667788 99999999999987665432 34688999873
No 31
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=92.18 E-value=10 Score=37.72 Aligned_cols=162 Identities=17% Similarity=0.220 Sum_probs=95.9
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i 172 (458)
+|||+..-=.-|=--.+++++-+.+.+ ++ ..++ |.++....+.++.
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~-~G-y~l~--------------------------------l~~t~~~~~~e~~ 48 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEARE-HG-YQLL--------------------------------LCNTGDDEEKEEY 48 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEEETTTHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EecCCCchHHHHH
Confidence 577777655556666677777777653 22 2332 3444444555589
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc--hh---------HHHHHHHHHHHhhhcCC
Q 012698 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND--IP---------AQRAINAAHVEAESIEN 241 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND--i~---------a~~ai~~i~~~A~s~~~ 241 (458)
++.|.++++|++|+.+-......-..+.+ . ++|||.+=.+.+++ ++ +..+.+.+. ... ++
T Consensus 49 i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~--~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li--~~G-h~ 119 (279)
T PF00532_consen 49 IELLLQRRVDGIILASSENDDEELRRLIK----S--GIPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLI--KKG-HR 119 (279)
T ss_dssp HHHHHHTTSSEEEEESSSCTCHHHHHHHH----T--TSEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHH--HTT-CC
T ss_pred HHHHHhcCCCEEEEecccCChHHHHHHHH----c--CCCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHH--hcc-cC
Confidence 99999999999999976666343333322 2 57899888888876 44 222333222 234 46
Q ss_pred c-EEEEEe-------cCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhCCc--EEE
Q 012698 242 G-IGVVKL-------MGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGH--MVI 301 (458)
Q Consensus 242 r-v~iVEv-------MGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~--~vV 301 (458)
+ |.++-. .-|..||..++...-- ..+-.+|.+..++.+ .=.+.+++.++.+.. +|+
T Consensus 120 ~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl-~~~~~~i~~~~~~~~---~g~~~~~~ll~~~p~idai~ 185 (279)
T PF00532_consen 120 RPIAFIGGPEDSSTSRERLQGYRDALKEAGL-PIDEEWIFEGDFDYE---SGYEAARELLESHPDIDAIF 185 (279)
T ss_dssp STEEEEEESTTTHHHHHHHHHHHHHHHHTTS-CEEEEEEEESSSSHH---HHHHHHHHHHHTSTT-SEEE
T ss_pred CeEEEEecCcchHHHHHHHHHHHHHHHHcCC-CCCcccccccCCCHH---HHHHHHHHHHhhCCCCEEEE
Confidence 7 766654 4466788876655321 235566666667665 233445555555534 555
No 32
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.10 E-value=12 Score=36.00 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=72.1
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i 172 (458)
.|||+...-.-|-++.+++++.+.+.+ ++ ..++- .-|........+.
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~~ 47 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRA-AG-YSLLI-------------------------------ANSLNDPERELEI 47 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCChHHHHHH
Confidence 378888777788899999999888764 33 33330 1111112334577
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh---------HHHHHHHHHHHhhhcCCcE
Q 012698 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP---------AQRAINAAHVEAESIENGI 243 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~---------a~~ai~~i~~~A~s~~~rv 243 (458)
++.|..+++|++++.+++.... .+.+.+++.+ +|||.+=...+++++ ...+...+.. .. ++++
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~--~G-~~~i 119 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDERDP---ELVDALASLD--LPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLIS--LG-HRRI 119 (269)
T ss_pred HHHHHHcCCCEEEEecCCCCcH---HHHHHHHhCC--CCEEEEecccCCCCCEEEECcHHHHHHHHHHHHH--CC-CcEE
Confidence 8889999999999998764322 2334444445 456655433333332 2334443432 24 3457
Q ss_pred EEEEe-------cCCcchhHHHHh
Q 012698 244 GVVKL-------MGRYCGFIAMYA 260 (458)
Q Consensus 244 ~iVEv-------MGR~~G~lA~~a 260 (458)
.++-. +-|..||.....
T Consensus 120 ~~l~~~~~~~~~~~R~~Gf~~~~~ 143 (269)
T cd06281 120 ALVGGGSNTRPGRERLEGYKAAFA 143 (269)
T ss_pred EEecCccccccHHHHHHHHHHHHH
Confidence 66632 124466666554
No 33
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.23 E-value=0.3 Score=48.75 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCC-----cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 170 SKIVDSIQDRGI-----NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 170 ~~i~~~l~~~~I-----~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+++.+.++.+++ |.+++||||||+-.|..... ..++||+||-.
T Consensus 18 ~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~ 65 (259)
T PRK00561 18 PKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT 65 (259)
T ss_pred HHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec
Confidence 445555655566 99999999999887665532 35788999874
No 34
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.57 E-value=0.56 Score=46.96 Aligned_cols=46 Identities=35% Similarity=0.432 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcC-------CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 169 TSKIVDSIQDRG-------INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 169 ~~~i~~~l~~~~-------I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
.+++.+.|++++ .|.++++|||||+-.|.+.... .-.++|++||..
T Consensus 17 ~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN~ 69 (265)
T PRK04885 17 ASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT 69 (265)
T ss_pred HHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEeC
Confidence 344555555544 6899999999998766654321 114788999874
No 35
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=88.94 E-value=0.24 Score=49.84 Aligned_cols=57 Identities=19% Similarity=0.420 Sum_probs=38.4
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh------HHHHHHHHHH
Q 012698 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP------AQRAINAAHV 234 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~------a~~ai~~i~~ 234 (458)
...+...+.|.++++|||||+..+.+... ..++||+||+.-==|=++ ..++++.+..
T Consensus 69 ~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 69 LEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINTGTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp CHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecCCCccccccCCHHHHHHHHHHHhc
Confidence 34457789999999999999988776543 357899999963211111 4556666554
No 36
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.48 E-value=0.86 Score=46.19 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
+.|.+|+||||||+-.|..... ..++||+||-
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN 95 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIH 95 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEe
Confidence 6899999999999765555432 3468899985
No 37
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.66 E-value=1.3 Score=44.42 Aligned_cols=32 Identities=34% Similarity=0.279 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcCC-CeeEeeecc
Q 012698 181 INQVYIIGGDGTQKGAAVIYEEIRQRGL-KVAVAGIPK 217 (458)
Q Consensus 181 I~~LvvIGGdgs~~~a~~L~~~~~~~~~-~i~vvgIPk 217 (458)
.|.++++|||||+-.|..... .. ++|++||..
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~-----~~~~~pilgIn~ 72 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTG-----FREDCLYAGIST 72 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhc-----ccCCCeEEeEec
Confidence 689999999999876655432 22 467888876
No 38
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.57 E-value=1.1 Score=44.51 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+.|.+++||||||+-.|.... ++||+||-.
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin~ 70 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKV--------GTPLVGFKA 70 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHc--------CCCEEEEeC
Confidence 669999999999997665432 578999874
No 39
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=84.45 E-value=1.3 Score=45.92 Aligned_cols=51 Identities=35% Similarity=0.616 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCch
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (458)
+|.-.+++.+.++++|-+++.|||||.+.... .. +-++||.|||.=.-|=.
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~---av---~~~vPvLGipaGvk~~S 137 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVAE---AV---GADVPVLGIPAGVKNYS 137 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHHh---hc---cCCCceEeeccccceec
Confidence 57888999999999999999999999886543 22 45799999998766643
No 40
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.93 E-value=1.3 Score=45.20 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+.|.++++|||||+-.|..... ..++||+||-.
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~ 100 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ 100 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec
Confidence 6899999999999987766542 34678999864
No 41
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.90 E-value=1.3 Score=44.68 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
+.|.+++||||||+-.|..... ..++||+||-
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn 73 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGIN 73 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe
Confidence 6899999999999987665432 3468899985
No 42
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=81.53 E-value=45 Score=30.96 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=57.4
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i 172 (458)
|||++..+-..|-.+.+++++-..+.+ .+ .++.- +.+........+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g-~~l~~-------------------------------~~~~~~~~~~~~~ 47 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AG-YQVLL-------------------------------ANSQNDAEKQLSA 47 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cC-CeEEE-------------------------------EeCCCCHHHHHHH
Confidence 589999877788889999988777753 22 12210 0111112335667
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
++.+.+.++|++|+.+.+.+... ..+.+.+. ++|+|.+-.+.++
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~--~ip~v~~~~~~~~ 91 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT---IVKLARKA--GIPVVLVDRDIPD 91 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh---HHHHhhhc--CCCEEEeccCCCC
Confidence 77778889999999988766543 22333333 4668887776653
No 43
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=81.34 E-value=42 Score=34.36 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=87.8
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTS 170 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~~ 170 (458)
..||++..--.-|=....++++-..+.+ ++ ..+ +|.++.. .+..+
T Consensus 59 ~~Ig~i~p~~~~~~~~~i~~gi~~~~~~-~g-y~~--------------------------------~l~~~~~~~~~e~ 104 (333)
T COG1609 59 KTIGLVVPDITNPFFAEILKGIEEAARE-AG-YSL--------------------------------LLANTDDDPEKER 104 (333)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEE--------------------------------EEECCCCCHHHHH
Confidence 4688887644457777888888887753 33 233 2445554 34567
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc-Cchh---------HHHHHHHHHHHhhhcC
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID-NDIP---------AQRAINAAHVEAESIE 240 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID-NDi~---------a~~ai~~i~~~A~s~~ 240 (458)
++.+.|...++|++|+.| ...... +.+.+.+.+++ +|.|=.+.+ .+++ +..+.+.+ -...|
T Consensus 105 ~~~~~l~~~~vdGiIi~~-~~~~~~---~~~~l~~~~~P--~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L--~~~G~- 175 (333)
T COG1609 105 EYLETLLQKRVDGLILLG-ERPNDS---LLELLAAAGIP--VVVIDRSPPGLGVPSVGIDNFAGAYLATEHL--IELGH- 175 (333)
T ss_pred HHHHHHHHcCCCEEEEec-CCCCHH---HHHHHHhcCCC--EEEEeCCCccCCCCEEEEChHHHHHHHHHHH--HHCCC-
Confidence 889999999999999999 222222 22333444554 555544333 3333 23333322 22333
Q ss_pred CcEEEEEe-------cCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh
Q 012698 241 NGIGVVKL-------MGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE 295 (458)
Q Consensus 241 ~rv~iVEv-------MGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~ 295 (458)
+++.++-. .-|..||+.+...-.- ..+-.++.+..|+.+ .-.+.+.+-+..
T Consensus 176 ~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~-~~~~~~i~~~~~~~~---~g~~~~~~ll~~ 233 (333)
T COG1609 176 RRIAFIGGPLDSSASRERLEGYRAALREAGL-PINPEWIVEGDFSEE---SGYEAAERLLAR 233 (333)
T ss_pred ceEEEEeCCCccccHhHHHHHHHHHHHHCCC-CCCcceEEecCCChH---HHHHHHHHHHhc
Confidence 45666543 3345688876655332 111356666666554 344445555544
No 44
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.26 E-value=1.4 Score=44.82 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+.|.++++|||||+-.|.+... ..++||+||-.
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~ 96 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT 96 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec
Confidence 6899999999999876665432 34688999864
No 45
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.25 E-value=1.4 Score=45.10 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
+.|.+++||||||+-.|..... ..++||+||-
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN 99 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTIN 99 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEe
Confidence 6899999999999877665432 3578899995
No 46
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.17 E-value=1.5 Score=44.52 Aligned_cols=33 Identities=30% Similarity=0.566 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+.|.++++|||||+-.|..... ..++||+||-.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~ 95 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR 95 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC
Confidence 6899999999999877665532 34678998863
No 47
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=80.97 E-value=2.9 Score=44.45 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=68.5
Q ss_pred CceEEEEEccCCCCcchhH-HHHH--HHHHHHHh------cCCcEEEEEccccccccc-C---CcccCChhHHhchh---
Q 012698 90 DEVHACIVTCGGLCPGLNT-VIRE--IVCGLYHM------YGVSKILGIDGGYRGFYS-K---NTINLTPKVVNDIH--- 153 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNa-vIr~--~v~~~~~~------~~~~~v~Gi~~G~~GL~~-~---~~~~L~~~~v~~~~--- 153 (458)
++.|||++|+||..|=-|. -|.+ ..++..+. ..-.+..-+|.||.--.- . .+++|+.. ..+.
T Consensus 222 ~~akIALvTsgGivPkgnPd~i~s~~A~~yg~Y~i~~~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~L--reLe~EG 299 (431)
T TIGR01917 222 SKAKIAIVTSGGIVPKGNPDHIESSSASKYGKYDIDGFDDLSEADHETAHGGHDPTYANEDADRVIPVDVL--RDLEKEG 299 (431)
T ss_pred hhCEEEEEecCCcccCCCCCccccccCCCceEEeCCccCcCCccceEEeccccChHHHhcCCCeeeeHHHH--HHHHHcC
Confidence 3469999999999997776 3331 11110000 001133344556654432 1 13444332 2221
Q ss_pred ----------hcCccccccCCC--cchHHHHHHHHHHcCCcEEEEEcCCCc-hHHHHHHHHHHHHcCCCeeEeee
Q 012698 154 ----------KRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 154 ----------~~GGs~LGtsR~--~~~~~~i~~~l~~~~I~~LvvIGGdgs-~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
.+-|+ ||++. ...-++|++.|++.++|+.|..-.=|| .+....+.+++++.|++ +|.|
T Consensus 300 ~IG~l~~~fy~t~G~--gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIP--vV~i 370 (431)
T TIGR01917 300 KIGELFKYFYSTTGN--GTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIP--VVHI 370 (431)
T ss_pred CcccccCeeEEccCC--CccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCC--EEEE
Confidence 22221 33332 235678999999999999999977666 55566678889888854 5544
No 48
>PRK13055 putative lipid kinase; Reviewed
Probab=80.79 E-value=7.2 Score=40.07 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (458)
.+.+++++.....+.|.|+++|||||+..+.. .+...+..+++--||.==-||+.
T Consensus 46 ~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvn---gl~~~~~~~~LgiiP~GTgNdfA 100 (334)
T PRK13055 46 NSAKNEAKRAAEAGFDLIIAAGGDGTINEVVN---GIAPLEKRPKMAIIPAGTTNDYA 100 (334)
T ss_pred ccHHHHHHHHhhcCCCEEEEECCCCHHHHHHH---HHhhcCCCCcEEEECCCchhHHH
Confidence 35556666666778999999999999876442 22222334567778988889987
No 49
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=80.67 E-value=9.8 Score=38.16 Aligned_cols=84 Identities=21% Similarity=0.306 Sum_probs=54.5
Q ss_pred cCCCcchHHHHHHHHHHcCCcEEEEEcCCCchHHHHH-HHHHHHHcCCCeeEeeecccccCchh--------HHHHHHHH
Q 012698 162 TSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV-IYEEIRQRGLKVAVAGIPKTIDNDIP--------AQRAINAA 232 (458)
Q Consensus 162 tsR~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~-L~~~~~~~~~~i~vvgIPkTIDNDi~--------a~~ai~~i 232 (458)
+.+...+..++++.+.+.+.|.++++|||||+..+.. |.+. ..+.+.++.-||.==-||.. ..++++.+
T Consensus 34 ~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i 111 (293)
T TIGR03702 34 VTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLA 111 (293)
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHH
Confidence 4444455667777777788899999999999876553 3221 11234568889998899987 34555554
Q ss_pred HHHhhhcCCcEEEEEecC
Q 012698 233 HVEAESIENGIGVVKLMG 250 (458)
Q Consensus 233 ~~~A~s~~~rv~iVEvMG 250 (458)
. .+..+.+-+.++-|
T Consensus 112 ~---~g~~~~iDlg~v~~ 126 (293)
T TIGR03702 112 L---NGAAQPIDLARVNG 126 (293)
T ss_pred H---hCCceeeeEEEECC
Confidence 2 23335677777754
No 50
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.87 E-value=1.6 Score=44.64 Aligned_cols=33 Identities=36% Similarity=0.530 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+.|.++++|||||+-.|..... ..++||+||..
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~ 104 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL 104 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec
Confidence 6899999999999877766532 34678999874
No 51
>PRK13054 lipid kinase; Reviewed
Probab=79.50 E-value=12 Score=37.63 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHHcCCcEEEEEcCCCchHHHH-HHHHHHHHcCCCeeEeeecccccCchh--------HHHHHHHHHHHh
Q 012698 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAA-VIYEEIRQRGLKVAVAGIPKTIDNDIP--------AQRAINAAHVEA 236 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~-~L~~~~~~~~~~i~vvgIPkTIDNDi~--------a~~ai~~i~~~A 236 (458)
..+..++++...+.+.|.++++|||||+..+. .|.+. ..+.++++--||.==-||+. ..++++.+ +
T Consensus 42 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i---~ 116 (300)
T PRK13054 42 KGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFATAAGIPLEPDKALKLA---I 116 (300)
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHH---H
Confidence 34556667666677899999999999987754 33211 01334678888988889987 33455443 2
Q ss_pred hhcCCcEEEEEecCC
Q 012698 237 ESIENGIGVVKLMGR 251 (458)
Q Consensus 237 ~s~~~rv~iVEvMGR 251 (458)
....+++-+.++-+|
T Consensus 117 ~g~~~~iDlg~v~~~ 131 (300)
T PRK13054 117 EGRAQPIDLARVNDR 131 (300)
T ss_pred hCCceEEEEEEEcCc
Confidence 233345777777665
No 52
>PRK13337 putative lipid kinase; Reviewed
Probab=78.74 E-value=9.1 Score=38.61 Aligned_cols=82 Identities=22% Similarity=0.273 Sum_probs=53.3
Q ss_pred cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------HHHHHHHHHHHhh
Q 012698 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------AQRAINAAHVEAE 237 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------a~~ai~~i~~~A~ 237 (458)
..+..++++.+...+.|.|+++|||||...+..- +...+..+++--||.==-||.. ..++++.+. .
T Consensus 43 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~g---l~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~---~ 116 (304)
T PRK13337 43 PGDATLAAERAVERKFDLVIAAGGDGTLNEVVNG---IAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVII---E 116 (304)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHH---HhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHH---c
Confidence 3456666666667788999999999998776532 2222334567788988889988 334554432 2
Q ss_pred hcCCcEEEEEecCCcc
Q 012698 238 SIENGIGVVKLMGRYC 253 (458)
Q Consensus 238 s~~~rv~iVEvMGR~~ 253 (458)
+..+.+-+.++-+|..
T Consensus 117 g~~~~vDlg~vn~~~f 132 (304)
T PRK13337 117 GHTVPVDIGKANNRYF 132 (304)
T ss_pred CCeEEEEEEEECCEEE
Confidence 2234566777766643
No 53
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=78.41 E-value=1.8 Score=47.07 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
++|.+|+||||||+-.|..+.. ...+||+||-
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN 293 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS 293 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe
Confidence 6899999999999887776543 3467899985
No 54
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=78.17 E-value=4.4 Score=41.50 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH--cCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ--RGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~--~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.+.|.+|-|||--+++.|..++-.... +.-.+|+|.||-|-
T Consensus 65 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTta 119 (332)
T cd08180 65 EVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTS 119 (332)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCC
Confidence 457799999999999999999999999998876543322 22347899999993
No 55
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.83 E-value=1.8 Score=43.53 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 179 ~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
.+.|.++++|||||+-.|..+. ..++|++|||.
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~ 88 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM 88 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC
Confidence 4789999999999998666532 33688999995
No 56
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=77.48 E-value=14 Score=39.78 Aligned_cols=95 Identities=14% Similarity=0.233 Sum_probs=62.4
Q ss_pred CCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcc
Q 012698 88 VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH 167 (458)
Q Consensus 88 ~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~ 167 (458)
+..+.+|||+|| ++. ||||-+...+..+++..+|+-+.-=. +|=. ...
T Consensus 132 P~~p~~IGVITS--~tg---AairDIl~~~~rR~P~~~viv~pt~V---------------------QG~~------A~~ 179 (440)
T COG1570 132 PFFPKKIGVITS--PTG---AALRDILHTLSRRFPSVEVIVYPTLV---------------------QGEG------AAE 179 (440)
T ss_pred CCCCCeEEEEcC--Cch---HHHHHHHHHHHhhCCCCeEEEEeccc---------------------cCCC------cHH
Confidence 344568999998 555 78999999888888866776222111 1110 013
Q ss_pred hHHHHHHHHHHcC-CcEEEEEcCCCchHHHHHHHHHHHHc---CCCeeEee
Q 012698 168 DTSKIVDSIQDRG-INQVYIIGGDGTQKGAAVIYEEIRQR---GLKVAVAG 214 (458)
Q Consensus 168 ~~~~i~~~l~~~~-I~~LvvIGGdgs~~~a~~L~~~~~~~---~~~i~vvg 214 (458)
.+-++++.+.+.+ +|.|||.=|-||..---.+.+|.-.+ ..+||||.
T Consensus 180 eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 180 EIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 3456666666666 99999999999998766665554333 44666663
No 57
>PLN02929 NADH kinase
Probab=77.12 E-value=1.6 Score=44.54 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 179 ~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
.+.|.+|++|||||+-.|.... ..++||+||-.
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~ 95 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNS 95 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc------CCCCcEEEEEC
Confidence 3568999999999997766543 23688999843
No 58
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=76.88 E-value=5.8 Score=42.29 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCc-hHHHHHHHHHHHHcCCCeeEeee
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs-~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
..-.+|++.|++-++|+.+....=|| .+....+.+++++.|++ +|.|
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiP--vv~~ 370 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIP--VVHM 370 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCC--EEEE
Confidence 34689999999999999999988777 55566778899888854 5554
No 59
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=75.59 E-value=87 Score=30.91 Aligned_cols=70 Identities=7% Similarity=0.187 Sum_probs=45.3
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
...||++...-.-|-.+.+++++-..+.+ ++ .+++-+ -+........
T Consensus 56 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 102 (327)
T PRK10423 56 TRTIGMLITASTNPFYSELVRGVERSCFE-RG-YSLVLC-------------------------------NTEGDEQRMN 102 (327)
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHH
Confidence 35799988665668888889998887754 33 233200 0111112334
Q ss_pred HHHHHHHHcCCcEEEEEcCCCch
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQ 193 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~ 193 (458)
+.++.|...++|++++.+.+.+.
T Consensus 103 ~~~~~l~~~~vdGiI~~~~~~~~ 125 (327)
T PRK10423 103 RNLETLMQKRVDGLLLLCTETHQ 125 (327)
T ss_pred HHHHHHHHcCCCEEEEeCCCcch
Confidence 67778888999999999876543
No 60
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=75.36 E-value=3.5 Score=42.75 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc--------------CCCeeEeeecccccC
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--------------GLKVAVAGIPKTIDN 221 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~--------------~~~i~vvgIPkTIDN 221 (458)
.+.+++++.++++++|.+|-|||--++..|..++-..... +-.+|+|.||-|-.+
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 65 EDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 5688999999999999999999999999998887655421 112799999999443
No 61
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=74.38 E-value=17 Score=39.50 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=59.4
Q ss_pred cEEEEEcccccccccCCcccCChhHHhchhhcCc---cccccCCCcchHHHHHHHHHHcCCcEEEEEcCCCchHHHH-HH
Q 012698 124 SKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGG---TILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAA-VI 199 (458)
Q Consensus 124 ~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GG---s~LGtsR~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~-~L 199 (458)
.+++-|.|=..|= +.-..+-+..+..+....| .+.-|.+. .+..++++.+...+.|.+|++|||||+..+. -|
T Consensus 112 kr~lvIvNP~SGk--g~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL 188 (481)
T PLN02958 112 KRLLVFVNPFGGK--KSASKIFFDVVKPLLEDADIQLTIQETKYQ-LHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGL 188 (481)
T ss_pred cEEEEEEcCCCCC--cchhHHHHHHHHHHHHHcCCeEEEEeccCc-cHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHH
Confidence 3667777776663 2222222334665555555 23444443 4455666676677889999999999987543 23
Q ss_pred HHHHH-HcCCCeeEeeecccccCchh
Q 012698 200 YEEIR-QRGLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 200 ~~~~~-~~~~~i~vvgIPkTIDNDi~ 224 (458)
.+.-. +.+.++++--||.==-||+.
T Consensus 189 ~~~~~~~~~~~~pLGiIPaGTgNdfA 214 (481)
T PLN02958 189 LEREDWKTAIKLPIGMVPAGTGNGMA 214 (481)
T ss_pred hhCccccccccCceEEecCcCcchhh
Confidence 21000 01346788889998888877
No 62
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=73.63 E-value=5.7 Score=40.79 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
+..+++++.+++.+.|.+|.|||--.++.|..++. . + .+|+|.||-|..+|
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~-~--~--~~p~i~iPTT~~t~ 115 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAY-K--L--GIPFISVPTAASHD 115 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHH-h--c--CCCEEEecCcccCC
Confidence 56788999999999999999999999998888762 2 2 46899999997665
No 63
>PLN02727 NAD kinase
Probab=73.35 E-value=2.8 Score=48.57 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
++|.+|+||||||+-.|..+.. +..+||+||-.
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl 775 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL 775 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC
Confidence 6899999999999987776643 34678999864
No 64
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=72.58 E-value=3.3 Score=42.00 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+.|.++++|||||+..|..... +.++|++||-.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn~ 95 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGINH 95 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC
Confidence 5899999999999987665432 34678999874
No 65
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=71.65 E-value=6.9 Score=40.30 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
++.+++++.+++++.|.+|-|||--++..|..++-. ..+|+|.||-|-..+
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTagTg 114 (351)
T cd08170 64 AEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIASTD 114 (351)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCccccC
Confidence 457788999999999999999999999998888743 257899999995443
No 66
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=71.12 E-value=7.9 Score=39.79 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.+.|.+|-|||--.++.|..++-.. ++|+|.||-|-
T Consensus 64 ~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTta 111 (337)
T cd08177 64 EVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTL 111 (337)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCc
Confidence 4678999999999999999999999999988876432 57899999994
No 67
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=71.11 E-value=1.1e+02 Score=30.31 Aligned_cols=87 Identities=15% Similarity=0.225 Sum_probs=54.0
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
...||++...-.-|-.+.++.++...+.+ ++ ..++- .-+....+...
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 110 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEA-QG-RMVFL-------------------------------LQGGKDGEQLA 110 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCCHHHHH
Confidence 35899999777778888899998887753 33 23320 01112223345
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
..++.|...++|++++.+.+.... .+.+.+.+.++ |+|.+
T Consensus 111 ~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~i--PvV~~ 150 (342)
T PRK10014 111 QRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKGI--PVVFA 150 (342)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcCC--CEEEE
Confidence 777888899999999998765322 22334444554 45543
No 68
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.84 E-value=7.8 Score=39.93 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
+..+++++.+++.++|.+|-|||--.++.|..++... .+|+|.||-|-..+
T Consensus 63 ~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtg 113 (347)
T cd08172 63 ENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATC 113 (347)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccC
Confidence 4678999999999999999999999999988887542 57899999995443
No 69
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=70.34 E-value=8.9 Score=39.99 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC--------------CCeeEeeecccccC
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG--------------LKVAVAGIPKTIDN 221 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~--------------~~i~vvgIPkTIDN 221 (458)
...+++++.+++.++|.+|-|||--+++.|..++-....-+ -.+|+|.||-|-..
T Consensus 70 ~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagT 138 (374)
T cd08189 70 ENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGT 138 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCcc
Confidence 45789999999999999999999999999887765432111 13689999999433
No 70
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=70.00 E-value=7.3 Score=40.34 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
+..+++++.+++.+.|.++.|||--.++.|..++ +. + .+|+|.||-|...|
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~~--r--gip~I~IPTT~~td 124 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-YR--L--GIPFISVPTAASHD 124 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-Hh--c--CCCEEEeCCCccCC
Confidence 4678899999999999999999998888887776 21 3 46799999996554
No 71
>PRK13059 putative lipid kinase; Reviewed
Probab=69.97 E-value=20 Score=36.01 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=45.5
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------HHHHHHHHHHHhhhcCCcEEEEE
Q 012698 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------AQRAINAAHVEAESIENGIGVVK 247 (458)
Q Consensus 176 l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------a~~ai~~i~~~A~s~~~rv~iVE 247 (458)
..+.+.|.++++|||||...+. +.+.+.+.++++--||.==-||.. ..++++.+. .+..+++=+.+
T Consensus 52 ~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~---~g~~~~vDlg~ 125 (295)
T PRK13059 52 DIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQIL---KSKPKKVDLGK 125 (295)
T ss_pred HhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHH---hCCcEEeeEEE
Confidence 3356889999999999987654 233334556778889988889987 334555442 23334566666
Q ss_pred ecCC
Q 012698 248 LMGR 251 (458)
Q Consensus 248 vMGR 251 (458)
+-+|
T Consensus 126 v~~~ 129 (295)
T PRK13059 126 INDK 129 (295)
T ss_pred ECCE
Confidence 6544
No 72
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=69.82 E-value=9.3 Score=39.62 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-------------CCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTIDND 222 (458)
+..+++++.+++.+.|.+|-|||--.+..|..++-..... .-.+|+|.||-|-..+
T Consensus 67 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 67 SNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 4578899999999999999999999999988876433110 1157899999995543
No 73
>PRK13057 putative lipid kinase; Reviewed
Probab=69.18 E-value=13 Score=37.15 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------HHHHHHHHHHHhh
Q 012698 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------AQRAINAAHVEAE 237 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------a~~ai~~i~~~A~ 237 (458)
..+..++++. ...+.|.++++|||||+..+.. .+.. .++++-.||.==-||+. ..++++.+. .
T Consensus 37 ~~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~---~l~~--~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~---~ 107 (287)
T PRK13057 37 PDDLSEVIEA-YADGVDLVIVGGGDGTLNAAAP---ALVE--TGLPLGILPLGTANDLARTLGIPLDLEAAARVIA---T 107 (287)
T ss_pred HHHHHHHHHH-HHcCCCEEEEECchHHHHHHHH---HHhc--CCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHH---c
Confidence 3345555555 3567899999999999887543 2222 25678889988889988 344554442 2
Q ss_pred hcCCcEEEEEecCCc
Q 012698 238 SIENGIGVVKLMGRY 252 (458)
Q Consensus 238 s~~~rv~iVEvMGR~ 252 (458)
++.+++-+.++-+|+
T Consensus 108 ~~~~~vD~g~~~~~~ 122 (287)
T PRK13057 108 GQVRRIDLGWVNGHY 122 (287)
T ss_pred CCeEEeeEEEECCEE
Confidence 223456666665553
No 74
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=68.90 E-value=9.5 Score=39.78 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkT 218 (458)
+..+++++.++++++|.+|-|||--.++.|..++-.... ....+|+|.||-|
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 67 ESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 457889999999999999999999999998877521110 1235789999998
No 75
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.85 E-value=4.1 Score=45.13 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
++|.+|+||||||+-.|..... ..++||+||-.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~ 380 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM 380 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC
Confidence 5799999999999877665432 34688999864
No 76
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=68.34 E-value=1.3e+02 Score=29.77 Aligned_cols=67 Identities=4% Similarity=0.009 Sum_probs=42.9
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
..||++...-.-|-.+.+++++.+.+.+ ++ .++.- ..+........+
T Consensus 62 ~~Igvv~~~~~~~~~~~l~~gi~~~~~~-~g-~~~~~-------------------------------~~~~~~~~~~~~ 108 (328)
T PRK11303 62 RSIGLIIPDLENTSYARIAKYLERQARQ-RG-YQLLI-------------------------------ACSDDQPDNEMR 108 (328)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCCHHHHHH
Confidence 5799998765667788888888777753 33 23320 001111122346
Q ss_pred HHHHHHHcCCcEEEEEcCCC
Q 012698 172 IVDSIQDRGINQVYIIGGDG 191 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdg 191 (458)
+++.|...++|++++.+.+.
T Consensus 109 ~~~~l~~~~vdgiIi~~~~~ 128 (328)
T PRK11303 109 CAEHLLQRQVDALIVSTSLP 128 (328)
T ss_pred HHHHHHHcCCCEEEEcCCCC
Confidence 77778889999999988754
No 77
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=68.20 E-value=10 Score=39.65 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc--------------CCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--------------GLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~--------------~~~i~vvgIPkT 218 (458)
...+++++.+++++.|.+|-|||--.++.|..++-.+..- ...+|+|.||-|
T Consensus 71 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 71 DQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 4578899999999999999999999999988776533210 124789999988
No 78
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=67.82 E-value=9 Score=38.98 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
+..+++++.+++.+.|.+|-|||--.++.|..++-... + .+|+|.||-|...
T Consensus 65 ~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~t 116 (332)
T cd07766 65 EEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAAT 116 (332)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCch
Confidence 45778999999999999999999999998887765432 2 4679999999554
No 79
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=67.55 E-value=11 Score=39.28 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH----------------cCCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ----------------RGLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~----------------~~~~i~vvgIPkT 218 (458)
+..+++++.+++.++|.+|-|||--+++.|..++-.... ..-.+|+|.||-|
T Consensus 68 ~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTt 135 (375)
T cd08179 68 ETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPST 135 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCC
Confidence 457889999999999999999999999998887632110 0124689999988
No 80
>PRK00861 putative lipid kinase; Reviewed
Probab=66.97 E-value=24 Score=35.37 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=51.0
Q ss_pred cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------HHHHHHHHHHHhh
Q 012698 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------AQRAINAAHVEAE 237 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------a~~ai~~i~~~A~ 237 (458)
..+..++++.....+.|.++++|||||+..+.. .+.. ..+++--||.==-||.. ..++++.+. .
T Consensus 43 ~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~~--~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~---~ 114 (300)
T PRK00861 43 EIGADQLAQEAIERGAELIIASGGDGTLSAVAG---ALIG--TDIPLGIIPRGTANAFAAALGIPDTIEEACRTIL---Q 114 (300)
T ss_pred CCCHHHHHHHHHhcCCCEEEEECChHHHHHHHH---HHhc--CCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHH---c
Confidence 345667777777788999999999999877543 2222 24567778988889987 344555442 2
Q ss_pred hcCCcEEEEEecCCc
Q 012698 238 SIENGIGVVKLMGRY 252 (458)
Q Consensus 238 s~~~rv~iVEvMGR~ 252 (458)
+..+.+-+.++-+|.
T Consensus 115 g~~~~iDlg~vn~~~ 129 (300)
T PRK00861 115 GKTRRVDVAYCNGQP 129 (300)
T ss_pred CCcEEeeEEEECCEE
Confidence 223445555555543
No 81
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=66.82 E-value=11 Score=39.45 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc---------------CCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR---------------GLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~---------------~~~i~vvgIPkTI 219 (458)
+..+++++.+++.+.|.+|-|||--.++.|..++-....- .-.+|+|.||-|-
T Consensus 73 ~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTa 140 (379)
T TIGR02638 73 TVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTA 140 (379)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCC
Confidence 4577899999999999999999999999987765322110 1247899999993
No 82
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=65.82 E-value=1.3e+02 Score=28.82 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=40.4
Q ss_pred EEEEEccCC--CCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 93 HACIVTCGG--LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 93 ~iaIltsGG--~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
||||+...+ .-|-...++.++-+.+.+ ++ .+++ +..+. ..+...
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~-~g-y~~~-------------------------------~~~~~-~~~~~~ 46 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKE-LG-VEVK-------------------------------YVESV-EDADYE 46 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHh-cC-ceEE-------------------------------EEecC-CHHHHH
Confidence 578888652 367777788887776643 22 2222 11122 223345
Q ss_pred HHHHHHHHcCCcEEEEEcCC
Q 012698 171 KIVDSIQDRGINQVYIIGGD 190 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGd 190 (458)
+..+.|...++|++++.+.+
T Consensus 47 ~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 47 PNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHcCCCEEEECCcc
Confidence 67788899999999998755
No 83
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=65.80 E-value=12 Score=39.17 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.+.|.+|-|||--+++.|..++-.... ....+|+|.||-|=
T Consensus 75 ~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 75 ENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 457899999999999999999999999998887642111 02357899999983
No 84
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=65.66 E-value=13 Score=38.66 Aligned_cols=53 Identities=23% Similarity=0.210 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH------------cCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ------------RGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~------------~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.+.|.+|-|||--+++.|..++-.... ..-.+|+|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 70 ETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 457889999999999999999999999998876532110 12257899999994
No 85
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=65.54 E-value=12 Score=39.51 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-------------CCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkT 218 (458)
...++.++.+++.+.|.+|-|||--+++.|..++-....- .-.+|+|.||-|
T Consensus 93 ~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt 157 (395)
T PRK15454 93 TDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT 157 (395)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC
Confidence 3578899999999999999999999999988775432110 124689999988
No 86
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=65.06 E-value=32 Score=31.88 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=55.1
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
+.||.++ |+ .|+ ++..++..+.+.|++.++.|.++||-+..+.. +.++.|...+-.++=.+=+.+..|
T Consensus 46 ~~~v~ll--G~-~~~---~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~------~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 46 GLRVFLL--GA-KPE---VLEKAAERLRARYPGLKIVGYHHGYFGPEEEE------EIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CCeEEEE--CC-CHH---HHHHHHHHHHHHCCCcEEEEecCCCCChhhHH------HHHHHHHHcCCCEEEEECCCCHHH
Confidence 4678877 44 343 55555566666799999999999998753321 145566555555443333334444
Q ss_pred HHHHHHH-HcCCcEEEEEcC-CCchH
Q 012698 171 KIVDSIQ-DRGINQVYIIGG-DGTQK 194 (458)
Q Consensus 171 ~i~~~l~-~~~I~~LvvIGG-dgs~~ 194 (458)
..+..++ +.+-..++.+|| ++-+.
T Consensus 114 ~~~~~~~~~l~~~v~~~vG~~~d~~a 139 (171)
T cd06533 114 LWIARHKDRLPVPVAIGVGGSFDFLA 139 (171)
T ss_pred HHHHHHHHHCCCCEEEEeceeeEecc
Confidence 4444444 346777888888 44333
No 87
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=65.01 E-value=14 Score=39.00 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHH
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~ 200 (458)
...+++++.++++++|.+|-|||--++..|..++
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 65 ETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 4578899999999999999999999999988776
No 88
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.97 E-value=5.6 Score=40.44 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+.|.++++|||||+-.+..... ..++||+||..
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~ 94 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR 94 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC
Confidence 6899999999999877665432 34678999985
No 89
>PRK11914 diacylglycerol kinase; Reviewed
Probab=64.86 E-value=11 Score=37.94 Aligned_cols=54 Identities=26% Similarity=0.497 Sum_probs=40.6
Q ss_pred cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh
Q 012698 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (458)
..+..++++...+.+.|.++++|||||...+.. .+. +.++++--||.==-||+.
T Consensus 50 ~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA 103 (306)
T PRK11914 50 AHDARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA 103 (306)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH
Confidence 345667777777788999999999999886542 222 335678888988889988
No 90
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.33 E-value=5.6 Score=40.02 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
+.|.++++|||||+-.|.+.. ..||+||-
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN 80 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGIN 80 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEE
Confidence 789999999999986654421 34888884
No 91
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=64.26 E-value=13 Score=38.68 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCCeeEeeeccccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTID 220 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTID 220 (458)
+.++++++.+++.++|.+|-|||--.++.|..++-.... ..-.+|+|.||-|--
T Consensus 70 ~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTag 136 (376)
T cd08193 70 AVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAG 136 (376)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCc
Confidence 457899999999999999999999999998877643211 012578999999943
No 92
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=63.91 E-value=13 Score=38.89 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH------------------cCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ------------------RGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~------------------~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.++|.+|-|||--+++.|..++-.... ..-.+|+|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 70 TTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence 457788899999999999999999999998877543210 01247899999993
No 93
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=63.90 E-value=13 Score=38.70 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.+.|.+|-|||--.++.|..++-.... ....+|+|.||-|-
T Consensus 72 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 72 TNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 457889999999999999999999999998877632111 12357899999983
No 94
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=63.54 E-value=28 Score=34.60 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHH-HHHHHHHcCCCeeEee-ecccccCchh--------HHHHHHHHHHHhhhcC
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAV-IYEEIRQRGLKVAVAG-IPKTIDNDIP--------AQRAINAAHVEAESIE 240 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~-L~~~~~~~~~~i~vvg-IPkTIDNDi~--------a~~ai~~i~~~A~s~~ 240 (458)
..++...+.+.|.++++|||||+..+.. |.+ .. +.+.+| ||.==-||+. ..++++.+. ....
T Consensus 48 ~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~---~~~~ 119 (293)
T TIGR00147 48 RYVEEARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFARSLGIPEDLDKAAKLVI---AGDA 119 (293)
T ss_pred HHHHHHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHH---cCCc
Confidence 3344445568999999999999987553 322 11 233455 8987778877 233444432 2223
Q ss_pred CcEEEEEecCCc
Q 012698 241 NGIGVVKLMGRY 252 (458)
Q Consensus 241 ~rv~iVEvMGR~ 252 (458)
+++-+.++-+|.
T Consensus 120 ~~~Dlg~v~~~~ 131 (293)
T TIGR00147 120 RAIDMGQVNKQY 131 (293)
T ss_pred eEEEEEEECCeE
Confidence 456666666655
No 95
>PRK15138 aldehyde reductase; Provisional
Probab=63.47 E-value=13 Score=39.07 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc----------------CCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR----------------GLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~----------------~~~i~vvgIPkT 218 (458)
+..+++++.+++.+.|.+|-|||--+++.|..++-....- .-.+|+|.||-|
T Consensus 72 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTT 139 (387)
T PRK15138 72 ETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTL 139 (387)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecC
Confidence 4678999999999999999999999999988776332110 113689999988
No 96
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=63.09 E-value=14 Score=38.38 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-----------------cCCCeeEeeecccccC
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-----------------RGLKVAVAGIPKTIDN 221 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~-----------------~~~~i~vvgIPkTIDN 221 (458)
+..+++++.++++++|.+|-|||--+++.|..++-.... ..-.+|+|.||-|-..
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagt 135 (367)
T cd08182 64 EDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGT 135 (367)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCc
Confidence 457789999999999999999999999998877643210 1135789999999443
No 97
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.89 E-value=6.6 Score=40.06 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+.|.++++|||||+..+..... +.++|++||..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV 89 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec
Confidence 6899999999999876665432 34678888885
No 98
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=62.29 E-value=1.5e+02 Score=28.31 Aligned_cols=92 Identities=8% Similarity=0.037 Sum_probs=51.1
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i 172 (458)
||||+...=.-|-...++.++-+.+.+ ++ .++.-. . ..+.+.......+
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------~----------------~~~~~~~~~~~~~ 49 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKK-LG-VSVDIQ-------------A----------------APSEGDQQGQLSI 49 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHH-hC-CeEEEE-------------c----------------cCCCCCHHHHHHH
Confidence 577777655667777777777776653 23 222200 0 0011222334567
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
++.|..+++|++++.+.+.+.. ....+++.+++ +|||.+-..+
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~ 92 (275)
T cd06320 50 AENMINKGYKGLLFSPISDVNL--VPAVERAKKKG--IPVVNVNDKL 92 (275)
T ss_pred HHHHHHhCCCEEEECCCChHHh--HHHHHHHHHCC--CeEEEECCCC
Confidence 8888899999999876553321 11234444444 5677664443
No 99
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=61.93 E-value=26 Score=35.59 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=54.1
Q ss_pred EEEEEcccccccccCCcccCChhHHhc-hhhcCccc--cccCCCcchHHHHHHHHHHcCCcEEEEEcCCCchHH-HHHHH
Q 012698 125 KILGIDGGYRGFYSKNTINLTPKVVND-IHKRGGTI--LGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG-AAVIY 200 (458)
Q Consensus 125 ~v~Gi~~G~~GL~~~~~~~L~~~~v~~-~~~~GGs~--LGtsR~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~-a~~L~ 200 (458)
++..|+|-..| ++.. .-.|..+.. +...|.+. .=|... .+..++++.+...+.|.+++.|||||... ++.|.
T Consensus 4 ~~~~i~Np~sG--~~~~-~~~~~~~~~~l~~~g~~~~~~~t~~~-g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~ 79 (301)
T COG1597 4 KALLIYNPTSG--KGKA-KKLLREVEELLEEAGHELSVRVTEEA-GDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLA 79 (301)
T ss_pred eEEEEEccccc--ccch-hhHHHHHHHHHHhcCCeEEEEEeecC-ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHh
Confidence 45556666666 2222 223333333 33334321 112222 36778888888889999999999999874 34443
Q ss_pred HHHHHcCCCeeEeeecccccCchh
Q 012698 201 EEIRQRGLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 201 ~~~~~~~~~i~vvgIPkTIDNDi~ 224 (458)
+ ..... +--||.==-||..
T Consensus 80 ~----~~~~~-LgilP~GT~NdfA 98 (301)
T COG1597 80 G----TDDPP-LGILPGGTANDFA 98 (301)
T ss_pred c----CCCCc-eEEecCCchHHHH
Confidence 2 33331 6667988889988
No 100
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=61.78 E-value=65 Score=32.67 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=56.8
Q ss_pred CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcch
Q 012698 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (458)
Q Consensus 89 ~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~ 168 (458)
.-..||||+|| -...|+.++++.+-+ .++..+++-+.-=+ +|=. ...+
T Consensus 12 ~~p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p~~v---------------------QG~~------A~~~ 59 (319)
T PF02601_consen 12 KFPKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYPASV---------------------QGEG------AAAS 59 (319)
T ss_pred CCCCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEeccc---------------------cccc------hHHH
Confidence 34569999998 456666666666544 34544554222111 1100 0123
Q ss_pred HHHHHHHHHHcC----CcEEEEEcCCCchHHHHHHHHHHHHc---CCCeeEe-eecccccCch
Q 012698 169 TSKIVDSIQDRG----INQVYIIGGDGTQKGAAVIYEEIRQR---GLKVAVA-GIPKTIDNDI 223 (458)
Q Consensus 169 ~~~i~~~l~~~~----I~~LvvIGGdgs~~~a~~L~~~~~~~---~~~i~vv-gIPkTIDNDi 223 (458)
+-+.++.+.+.+ +|.++++=|-||...-..+.++.-.+ .+++||| ||=-.+|.=+
T Consensus 60 I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ti 122 (319)
T PF02601_consen 60 IVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDFTI 122 (319)
T ss_pred HHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCchH
Confidence 344455555443 99999999999987744443332211 3455554 5666666543
No 101
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=61.42 E-value=14 Score=38.35 Aligned_cols=50 Identities=24% Similarity=0.364 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
...+++++.+++++.|.+|-|||--.++.|..++-. ..+|+|.||-|-..
T Consensus 71 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTtagt 120 (366)
T PRK09423 71 NEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTIAST 120 (366)
T ss_pred HHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCcccc
Confidence 356789999999999999999999999988887632 25789999998433
No 102
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=60.85 E-value=15 Score=37.93 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
+..+++++.+++.+.|.+|-|||--.++.|..++.. ..+|+|.||-|-..+
T Consensus 64 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTtagtg 114 (349)
T cd08550 64 EEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIASTC 114 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCccccC
Confidence 457889999999999999999999999998888743 246899999995554
No 103
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=60.34 E-value=17 Score=37.72 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHc---CCcEEEEEcCCCchHHHHHHHHHHHHc-------------CCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDR---GINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~---~I~~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTI 219 (458)
+..+++++.++++ ++|.++-|||--+++.|..++-....- .-.+|+|.||-|=
T Consensus 65 ~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 65 DQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 4578888889988 999999999999999988876433210 1136799999983
No 104
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.95 E-value=1.6e+02 Score=27.98 Aligned_cols=88 Identities=8% Similarity=0.058 Sum_probs=51.1
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-chHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTSK 171 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-~~~~~ 171 (458)
+|||+...=.-|-...+++++.+.+.+...+..++ +.++... .....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 48 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT--------------------------------VVSADYDLNKQVS 48 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE--------------------------------EccCCCCHHHHHH
Confidence 47888877677888888888888775421111221 1112222 23446
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
.++.+...++|++++.+.+... .....+.+.+++ +|||.+-
T Consensus 49 ~i~~~~~~~~dgiIi~~~~~~~--~~~~i~~~~~~~--ipvv~~~ 89 (271)
T cd06321 49 QIDNFIAAKVDLILLNAVDSKG--IAPAVKRAQAAG--IVVVAVD 89 (271)
T ss_pred HHHHHHHhCCCEEEEeCCChhH--hHHHHHHHHHCC--CeEEEec
Confidence 7778888999999998765431 122224444455 4566553
No 105
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=59.91 E-value=18 Score=37.92 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH---------------cCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ---------------RGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~---------------~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.+.|.+|-|||--+++.|..++-.... ..-.+|+|.||-|-
T Consensus 74 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTa 141 (382)
T PRK10624 74 EVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTA 141 (382)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCC
Confidence 457788899999999999999999999998766422110 01247899999994
No 106
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=59.87 E-value=14 Score=37.98 Aligned_cols=50 Identities=16% Similarity=0.372 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
...+++++.+++++. |.++.|||--.+..|..++-.. .+ .+|+|.||-|.
T Consensus 65 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--~~p~i~VPTT~ 117 (344)
T TIGR01357 65 ETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MR--GIRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-cc--CCCEEEecCch
Confidence 457888999999988 8999999999999887776322 23 46899999995
No 107
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=59.60 E-value=27 Score=32.42 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=16.1
Q ss_pred ccccCCCcchHHHHHHHHHHcCCcEEE
Q 012698 159 ILGTSRGGHDTSKIVDSIQDRGINQVY 185 (458)
Q Consensus 159 ~LGtsR~~~~~~~i~~~l~~~~I~~Lv 185 (458)
+.||.-..+.++++++.|++++|++=+
T Consensus 8 IMGS~SD~~~mk~Aa~~L~~fgi~ye~ 34 (162)
T COG0041 8 IMGSKSDWDTMKKAAEILEEFGVPYEV 34 (162)
T ss_pred EecCcchHHHHHHHHHHHHHcCCCeEE
Confidence 455555445566666666666666644
No 108
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=59.39 E-value=1.6e+02 Score=27.70 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+..+.++.+.+.++|++++...+.+-. ..+.+.+.+ +|+|.+-.
T Consensus 42 ~~~~~i~~~~~~~vdgiii~~~~~~~~----~~~~~~~~~--ipvV~~~~ 85 (266)
T cd06278 42 DLDAALRQLLQYRVDGVIVTSGTLSSE----LAEECRRNG--IPVVLINR 85 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHH----HHHHHhhcC--CCEEEECC
Confidence 344667788889999999988764422 123344445 45666633
No 109
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=58.86 E-value=40 Score=35.11 Aligned_cols=205 Identities=14% Similarity=0.204 Sum_probs=110.0
Q ss_pred CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCc---ccCChhHHhchhhcCccccccCCC
Q 012698 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT---INLTPKVVNDIHKRGGTILGTSRG 165 (458)
Q Consensus 89 ~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~---~~L~~~~v~~~~~~GGs~LGtsR~ 165 (458)
....||.|+=+|| |.|+++..+.+... .+-+.+.+.-..++|-.... +.+......+...-+--.+|-.-.
T Consensus 9 ~~~~~I~VIGvGg---~G~n~v~~m~~~~~---~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aA 82 (338)
T COG0206 9 SLKARIKVIGVGG---AGGNAVNRMIEEGV---EGVEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAA 82 (338)
T ss_pred ccCceEEEEEeCC---cchHHHHHHHHhhh---CceEEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHH
Confidence 3457999999998 56777777766542 34588989888888865431 111111111110000011111111
Q ss_pred cchHHHHHHHHHHcCCcEEEEEcCCCchHH---HHHHHHHHHHcCC-CeeEeeecccccCchh---HHHHHHHHHHHhhh
Q 012698 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKG---AAVIYEEIRQRGL-KVAVAGIPKTIDNDIP---AQRAINAAHVEAES 238 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~---a~~L~~~~~~~~~-~i~vvgIPkTIDNDi~---a~~ai~~i~~~A~s 238 (458)
.++.+++.+.|+. .|++|++=|.|--++ |-.+++.++++|. -++|+..|-+----.. |.+.|..++..+.+
T Consensus 83 ee~~~~I~~~l~g--~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~Dt 160 (338)
T COG0206 83 EESIEEIEEALKG--ADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDT 160 (338)
T ss_pred HHHHHHHHHHhcc--CCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhCCc
Confidence 2456777777765 567787755544332 5577888877653 4678888888665554 66777777665544
Q ss_pred cC--CcEEEEEecCCcchhHHHHhh-------cccCCCceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCC
Q 012698 239 IE--NGIGVVKLMGRYCGFIAMYAT-------LGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAG 308 (458)
Q Consensus 239 ~~--~rv~iVEvMGR~~G~lA~~aa-------LA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vVvVaEGa~ 308 (458)
.- ...-+.|......-|-|...+ +.. -.|++..|- -..+ .++.++.-++..|.+.+=+.+...
T Consensus 161 lIvi~Ndkll~~~~~~~~~~Af~~ad~vl~~~v~~-i~e~I~~~g-linv-----DfaDv~~vm~~~G~A~mG~g~~~~ 232 (338)
T COG0206 161 LIVIPNDKLLKGKDKTPIAEAFNEADDVLGNAVKG-ITELITKPG-LVNV-----DFADVRTVMKGGGFALMGIGRASG 232 (338)
T ss_pred EEEEecHHHHhccCcccHHHHHHHHHHHHHHHHHH-HHHHhccCc-eEee-----cHHHHHHHHhcCCceeEEEeeccc
Confidence 10 012234555533344444322 111 123444441 1122 234466666667777776666654
No 110
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=57.91 E-value=1.7e+02 Score=27.61 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
....+.+.+..+++|++++...+.... .+.+.+.+.+ +|||.+=..
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~~--ipvv~i~~~ 89 (270)
T cd01545 44 LAERVRALLQRSRVDGVILTPPLSDNP---ELLDLLDEAG--VPYVRIAPG 89 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcc---HHHHHHHhcC--CCEEEEecC
Confidence 345677788899999999998874322 2223333445 456655433
No 111
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=57.80 E-value=16 Score=37.63 Aligned_cols=48 Identities=13% Similarity=0.284 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
...+++++..++.+.|.+|-|||--.++.|..++-. +.+|+|.||-|-
T Consensus 65 ~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~-----~~~p~i~VPTt~ 112 (345)
T cd08171 65 ENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADK-----LGKPVFTFPTIA 112 (345)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHH-----cCCCEEEecCcc
Confidence 456788888999999999999999999998887653 256899999984
No 112
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=57.68 E-value=8.8 Score=33.50 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcC-CcEEEEEcCCCchHHHHHHHHHHHHcCC--CeeEeeecccccCchh
Q 012698 169 TSKIVDSIQDRG-INQVYIIGGDGTQKGAAVIYEEIRQRGL--KVAVAGIPKTIDNDIP 224 (458)
Q Consensus 169 ~~~i~~~l~~~~-I~~LvvIGGdgs~~~a~~L~~~~~~~~~--~i~vvgIPkTIDNDi~ 224 (458)
.+.+....+..+ .+.++++|||||+..+.. .+.+... .+++.-||.==-||+.
T Consensus 42 ~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~---~l~~~~~~~~~~l~iiP~GT~N~~a 97 (130)
T PF00781_consen 42 AEALARILALDDYPDVIVVVGGDGTLNEVVN---GLMGSDREDKPPLGIIPAGTGNDFA 97 (130)
T ss_dssp HHHHHHHHHHTTS-SEEEEEESHHHHHHHHH---HHCTSTSSS--EEEEEE-SSS-HHH
T ss_pred HHHHHHHHhhccCccEEEEEcCccHHHHHHH---HHhhcCCCccceEEEecCCChhHHH
Confidence 344444333333 489999999999876543 3322332 4588999998899988
No 113
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=57.13 E-value=2.1e+02 Score=28.45 Aligned_cols=70 Identities=6% Similarity=0.156 Sum_probs=45.5
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
...||++...-..|=...+++++-+.+.+ ++ .+++-+. +........
T Consensus 59 ~~~i~vi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~ 105 (341)
T PRK10703 59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQ-KG-YTLILCN-------------------------------AWNNLEKQR 105 (341)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHHH
Confidence 35899998777777788888888877753 33 2333110 111122334
Q ss_pred HHHHHHHHcCCcEEEEEcCCCch
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQ 193 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~ 193 (458)
+.++.|...++|++++.+.+.+.
T Consensus 106 ~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 106 AYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHHcCCCEEEEecCCCCH
Confidence 66677888999999999876443
No 114
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=57.10 E-value=59 Score=36.03 Aligned_cols=94 Identities=24% Similarity=0.265 Sum_probs=68.2
Q ss_pred HHHHHHHH--cCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcCCcEEEEEe
Q 012698 171 KIVDSIQD--RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVVKL 248 (458)
Q Consensus 171 ~i~~~l~~--~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~rv~iVEv 248 (458)
+++..++. +-||+++|-.|--++.-|..|-+++-.-|++ -++-=|.||| +|++...=|..++.-=-|+..
T Consensus 112 rLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe-------qI~svi~IAka~P~~pIilq~ 183 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE-------QIRSVIRIAKANPTFPIILQW 183 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH-------HHHHHHHHHhcCCCCceEEEE
Confidence 45555544 5699999999999999999999988777775 3566688875 455544445555554446777
Q ss_pred cCCcch-----------hHHHHhhcccCCCceEecC
Q 012698 249 MGRYCG-----------FIAMYATLGSRDVDCCLIP 273 (458)
Q Consensus 249 MGR~~G-----------~lA~~aaLA~~~ad~ilIP 273 (458)
-|+++| -||+++.|-+ .+|++++-
T Consensus 184 egGraGGHHSweDld~llL~tYs~lR~-~~NIvl~v 218 (717)
T COG4981 184 EGGRAGGHHSWEDLDDLLLATYSELRS-RDNIVLCV 218 (717)
T ss_pred ecCccCCccchhhcccHHHHHHHHHhc-CCCEEEEe
Confidence 666665 3899999988 78888764
No 115
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=57.05 E-value=19 Score=37.48 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHH----------Hc-------CCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR----------QR-------GLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~----------~~-------~~~i~vvgIPkT 218 (458)
+..+++++.+++.+.|.+|-|||--.++.|..++-... .. .-.+|+|.||-|
T Consensus 62 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 62 ELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 45778899999999999999999999999887754321 00 124789999998
No 116
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=56.94 E-value=9.7 Score=38.35 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=26.8
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 179 ~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
...+.++++|||||+-.+..... ...+||+||=-
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~ 87 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGINL 87 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEeC
Confidence 67999999999999988777653 33578998854
No 117
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.38 E-value=85 Score=30.42 Aligned_cols=66 Identities=12% Similarity=0.037 Sum_probs=45.2
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i 172 (458)
+||++...-.-|.....+.++...+.+ ++ .+++ +.-++.......++
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-y~~~-------------------------------~~~~~~~~~~~~~~ 48 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA-IG-WNLR-------------------------------ILDGRGSEAGQAAA 48 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH-cC-cEEE-------------------------------EECCCCCHHHHHHH
Confidence 688888777788888899999888753 33 2332 00111122334578
Q ss_pred HHHHHHcCCcEEEEEcCCC
Q 012698 173 VDSIQDRGINQVYIIGGDG 191 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdg 191 (458)
++.+..+++|++|+.+.+.
T Consensus 49 i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 49 LNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHcCCCEEEEcCCCH
Confidence 8889999999999998653
No 118
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=56.37 E-value=56 Score=32.61 Aligned_cols=107 Identities=19% Similarity=0.322 Sum_probs=64.7
Q ss_pred EEEEEc-cCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchHH
Q 012698 93 HACIVT-CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTS 170 (458)
Q Consensus 93 ~iaIlt-sGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~~ 170 (458)
||+|+| |+.+-| ... .+.++ ..++-+.==+.|-.-.+-++++++++-......+.+..||-- ..++.
T Consensus 1 Ki~IitDS~~dl~------~~~----~~~~~-i~vvPl~i~~~~~~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~ 69 (280)
T PF02645_consen 1 KIAIITDSTSDLP------PEL----AEEYG-IYVVPLNIIIDGKEYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFE 69 (280)
T ss_dssp -EEEEEEGGG---------HHH----HHHTT-EEEE--EEEETTEEEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHH
T ss_pred CEEEEECCCCCCC------HHH----HHhCC-eEEEeEEEecCCeEEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHH
Confidence 678888 544444 122 22344 345444333444222233489999998888777877778765 45788
Q ss_pred HHHHHHHHcCCcEEEEE----cCCCchHHHHHHHHHHHHcCCCeeE
Q 012698 171 KIVDSIQDRGINQVYII----GGDGTQKGAAVIYEEIRQRGLKVAV 212 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvI----GGdgs~~~a~~L~~~~~~~~~~i~v 212 (458)
++.+.+.+.+-|.+++| |=.||+.+|...++.+ .+.+|.|
T Consensus 70 ~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~V 113 (280)
T PF02645_consen 70 EAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHV 113 (280)
T ss_dssp HHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEE
T ss_pred HHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEE
Confidence 99999888999988887 5677888888877765 2444444
No 119
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=55.31 E-value=22 Score=37.24 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTI 219 (458)
...+++++.++..+.|++|-|||--.+..|..++-.... ....+|+|.||-|-
T Consensus 73 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 138 (382)
T cd08187 73 ETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLA 138 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCC
Confidence 457888999999999999999999999988776542111 01257899999983
No 120
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=55.23 E-value=26 Score=36.64 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------cCC------CeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------RGL------KVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~-------~~~------~i~vvgIPkTI 219 (458)
...+++++.+++.+.|.+|-|||--.++.|..++-.... .+. .+|+|.||-|-
T Consensus 72 ~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 72 EEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 346778888999999999999999999998766532211 111 36899999994
No 121
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=54.98 E-value=25 Score=32.70 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=41.7
Q ss_pred cchHHHHHHHHHH---cCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 166 GHDTSKIVDSIQD---RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 166 ~~~~~~i~~~l~~---~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
.-|++.+++.++- .++|.++++-||+-|+- |.+.++++|..+-++|.|+....
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~ 143 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPGFST 143 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCCChH
Confidence 4577777777766 69999999999999975 55566678999999998865443
No 122
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=54.93 E-value=37 Score=32.70 Aligned_cols=94 Identities=14% Similarity=0.288 Sum_probs=60.9
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccc------ccc--ccCCcccCCh--hHHhch----hhcCc
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGY------RGF--YSKNTINLTP--KVVNDI----HKRGG 157 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~------~GL--~~~~~~~L~~--~~v~~~----~~~GG 157 (458)
+||||+-.-|-+. .-+...+. -++|+|.+|-.-- +|+ ++.++.+++. +++.+. ...|+
T Consensus 1 mKIaiIgAsG~~G------s~i~~EA~--~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKEAL--KRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhH------HHHHHHHH--hCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 5899998766654 34455554 3678999986543 444 3556778877 666553 12222
Q ss_pred cccccCCC---cchHHHHHHHHHHcCCcEEEEEcCCCchHH
Q 012698 158 TILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKG 195 (458)
Q Consensus 158 s~LGtsR~---~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~ 195 (458)
.. ++-. ....+.+.+.|+.-+..-|+|+||-||+.-
T Consensus 73 ~~--~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~i 111 (211)
T COG2910 73 GA--SDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEI 111 (211)
T ss_pred CC--CChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEE
Confidence 11 1100 123567888899999999999999999863
No 123
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=54.59 E-value=19 Score=37.38 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.++ |.++.|||--.+..|..++-.. .+ .+|+|.||-|.
T Consensus 76 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--gip~i~IPTT~ 128 (358)
T PRK00002 76 ETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MR--GIRFIQVPTTL 128 (358)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cC--CCCEEEcCchh
Confidence 457888999999887 9999999999999887776321 23 46899999995
No 124
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=54.58 E-value=25 Score=36.46 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-----------------CCCeeEeeecccccC
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-----------------GLKVAVAGIPKTIDN 221 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~-----------------~~~i~vvgIPkTIDN 221 (458)
+..+++++.+++.+.|.+|-|||--.++.|..++-..... .-.+|+|.||-|-..
T Consensus 68 ~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagt 139 (370)
T cd08192 68 AAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGT 139 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCch
Confidence 4578899999999999999999999999888776433110 113789999999544
No 125
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=54.35 E-value=20 Score=37.66 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCch
Q 012698 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (458)
..+.+++...+.+.+.|.++=|||--+.+.|..++.. +++|+|.||-+=++|=
T Consensus 70 ~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~-----~~~pfIsvPT~AS~Da 122 (360)
T COG0371 70 EEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR-----LGLPFISVPTIASTDA 122 (360)
T ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEecCcccccc
Confidence 3568888888888899999999999999999988754 3678999999977773
No 126
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=54.13 E-value=26 Score=37.07 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCCeeEeeeccc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKT 218 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkT 218 (458)
..++.++.+++.+.|.+|-+||--++..|..++-.... ...+.++|.||-|
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTT 137 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTT 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCC
Confidence 47788999999999999999999999988876533321 1123789999998
No 127
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=53.90 E-value=21 Score=36.81 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+..+++++.++++++ |.++.|||--.+..|..++... .+| +|+|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTT~ 121 (345)
T cd08195 69 ETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MRG--IDFIQIPTTL 121 (345)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hcC--CCeEEcchhH
Confidence 467899999999999 9999999999998887766422 234 6799999994
No 128
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=53.87 E-value=18 Score=37.24 Aligned_cols=46 Identities=4% Similarity=0.226 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
+..+++++.+++ +.|.+|-|||--.++.|..++.. + .+|+|.||-|
T Consensus 68 ~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~--~~p~i~IPTT 113 (348)
T cd08175 68 KAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---T--GIPYISVPTA 113 (348)
T ss_pred HHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---c--CCCEEEecCc
Confidence 346677777777 99999999999999988887632 2 4689999999
No 129
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=53.76 E-value=2.1e+02 Score=27.38 Aligned_cols=83 Identities=8% Similarity=-0.039 Sum_probs=45.8
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHHH
Q 012698 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (458)
Q Consensus 94 iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i~ 173 (458)
||++...=.-|-....+.++.+.+.+ ++ .+++ +-++....+..+.+
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~-~g-y~~~--------------------------------~~~~~~~~~~~~~~ 47 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLE-QR-YDLA--------------------------------LFPLLSLARLKRYL 47 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCcHHHHHHH
Confidence 56666444456677777777777653 23 2332 11222222334455
Q ss_pred H-HHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEee
Q 012698 174 D-SIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (458)
Q Consensus 174 ~-~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (458)
. .+..+++|++++.+.+-... ..+.+.+.++++-+++
T Consensus 48 ~~~l~~~~vdgvi~~~~~~~~~----~~~~l~~~~iPvv~~~ 85 (269)
T cd06297 48 ESTTLAYLTDGLLLASYDLTER----LAERRLPTERPVVLVD 85 (269)
T ss_pred HHHHHhcCCCEEEEecCccChH----HHHHHhhcCCCEEEEc
Confidence 4 58889999999998764422 2334444565544443
No 130
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.19 E-value=25 Score=32.93 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=16.5
Q ss_pred HHHHcCCcEEEEEcCCCchHH
Q 012698 175 SIQDRGINQVYIIGGDGTQKG 195 (458)
Q Consensus 175 ~l~~~~I~~LvvIGGdgs~~~ 195 (458)
..+...+|+|++-||||+-+.
T Consensus 80 ~a~~e~~DALivPGGFGAAKN 100 (217)
T COG3155 80 QADAEELDALIVPGGFGAAKN 100 (217)
T ss_pred hcCHHhcceeeccCccchhhh
Confidence 345667999999999997554
No 131
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=52.89 E-value=29 Score=35.97 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHcC--CcEEEEEcCCCchHHHHHHHHHHHHc-----------C------CCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRG--INQVYIIGGDGTQKGAAVIYEEIRQR-----------G------LKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~--I~~LvvIGGdgs~~~a~~L~~~~~~~-----------~------~~i~vvgIPkT 218 (458)
+..+++++.+++.+ .|.++-|||--.++.|..++-..... + -.+|+|.||-|
T Consensus 65 ~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTT 135 (355)
T TIGR03405 65 AQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTT 135 (355)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCC
Confidence 45778888888888 99999999999999887665431110 1 24789999998
No 132
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=52.86 E-value=28 Score=36.52 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-------------CCCeeEeeeccccc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTID 220 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTID 220 (458)
+..+.++.+++.+.|.+|-|||--.++.|..++-....- +-.+|+|.||-|-.
T Consensus 67 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtag 132 (386)
T cd08191 67 ELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAG 132 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCc
Confidence 456677888999999999999999999988876433110 11578999999943
No 133
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=52.79 E-value=2e+02 Score=27.01 Aligned_cols=84 Identities=10% Similarity=0.169 Sum_probs=52.1
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i 172 (458)
.||++...-..|-.+..+.++.+.+.+ ++ .+++-+ -+..........
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~ 47 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASA-AG-YSTIIG-------------------------------NSDENPETENRY 47 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHHHH
Confidence 378887766678888888898887753 33 244311 111112234567
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
.+.+...++|++++.+.+.... . .+.+.+.++ |+|.+
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~---~-~~~l~~~~i--pvV~~ 84 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAE---Q-LEDLLKRGI--PVVFV 84 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChH---H-HHHHHhCCC--CEEEE
Confidence 8889999999999998765532 2 344445554 45544
No 134
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=52.04 E-value=25 Score=36.13 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
...+++++.+++ +.|.+|.|||--.++.|..++ +. + .+|+|.||-|..+|
T Consensus 68 ~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~--gip~I~VPTT~~~~ 117 (332)
T cd08549 68 YELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--V--GKPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--c--CCCEEEeCCCcccC
Confidence 346778888888 999999999999999888776 32 2 46899999996554
No 135
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=51.86 E-value=1.5e+02 Score=30.00 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=58.7
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccC-CCcch
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS-RGGHD 168 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGts-R~~~~ 168 (458)
+..+||++..+-..|--+.+++++.+.+.+ ++ .+++ +.++ .....
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~-~g-~~l~--------------------------------i~~~~~~~~~ 69 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVF--------------------------------VQSANGNEET 69 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EECCCCCHHH
Confidence 467999999888899999999999888864 33 2333 1111 11233
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
..+.++.|..+++|++++.+.+.+.. ....+.+.+.+ +|||.+-..+
T Consensus 70 ~~~~i~~l~~~~vDGiIi~~~~~~~~--~~~l~~~~~~~--iPvV~id~~~ 116 (330)
T PRK10355 70 QMSQIENMINRGVDVLVIIPYNGQVL--SNVIKEAKQEG--IKVLAYDRMI 116 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhH--HHHHHHHHHCC--CeEEEECCCC
Confidence 45678888999999999997653311 12223344445 5677665444
No 136
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=51.72 E-value=1.2e+02 Score=29.57 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=49.7
Q ss_pred cCCcEEEEEcccccccccCCcccCChhHHhchhhcCcccc-----ccCCCc---chHHHHHHHHHHcCCcEEEEEcC---
Q 012698 121 YGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTIL-----GTSRGG---HDTSKIVDSIQDRGINQVYIIGG--- 189 (458)
Q Consensus 121 ~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~L-----GtsR~~---~~~~~i~~~l~~~~I~~LvvIGG--- 189 (458)
.++.+|.-+-.|..-.+. .-++...+.+...||.+| ++...+ ..+.+++..|- +++|+++.
T Consensus 96 ~~g~tIaVl~~gld~~yp----~~n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls----~~vivve~~~~ 167 (220)
T TIGR00732 96 VNGRTIAVLGTGLDQIYP----RQNSKLAAKIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLS----RAVLVVEAPLK 167 (220)
T ss_pred cCCCEEEEECCCCccCCc----hhhHHHHHHHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhc----CEEEEEECCCC
Confidence 355455444444432221 224445566777787555 111111 23566666554 67888887
Q ss_pred CCchHHHHHHHHHHHHcCCCeeEeeecccccCch
Q 012698 190 DGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (458)
Q Consensus 190 dgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (458)
.||+.+|..- .++| -+|..+|..|++..
T Consensus 168 sGtl~ta~~A----~~~g--r~v~~~pg~~~~~~ 195 (220)
T TIGR00732 168 SGALITARYA----LEQG--REVFAYPGDLNSPE 195 (220)
T ss_pred CchHHHHHHH----HHhC--CcEEEEcCCCCCcc
Confidence 4677665543 3344 46999999998743
No 137
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=51.40 E-value=1e+02 Score=33.07 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=33.2
Q ss_pred HHHHHHHHc-CCcEEEEEcCCCchHHHHHHHHHHHH---cCCCeeEe-eecccccCchh
Q 012698 171 KIVDSIQDR-GINQVYIIGGDGTQKGAAVIYEEIRQ---RGLKVAVA-GIPKTIDNDIP 224 (458)
Q Consensus 171 ~i~~~l~~~-~I~~LvvIGGdgs~~~a~~L~~~~~~---~~~~i~vv-gIPkTIDNDi~ 224 (458)
+.++.+... .+|.++++=|-||...-..+.++.-. +.+++||| ||=--+|.=|.
T Consensus 177 ~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ti~ 235 (432)
T TIGR00237 177 ESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDFTIS 235 (432)
T ss_pred HHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCccHH
Confidence 334444443 38999999999998875554443322 25566665 56666666443
No 138
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.12 E-value=96 Score=30.95 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcCCcEEEEE
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVVK 247 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~rv~iVE 247 (458)
..++.++.+++.++|++++. |=.+..+..+.+.++++|+..-...-|.|=+.- +..-+..++.-+++|.
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~er---------i~~i~~~s~gfIY~vs 173 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDER---------LKKIASHASGFVYYVS 173 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHH---------HHHHHHhCCCcEEEEe
Confidence 47899999999999999995 667888888999999999876555566662221 2222222345688888
Q ss_pred ecCC
Q 012698 248 LMGR 251 (458)
Q Consensus 248 vMGR 251 (458)
.||-
T Consensus 174 ~~Gv 177 (258)
T PRK13111 174 RAGV 177 (258)
T ss_pred CCCC
Confidence 8884
No 139
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=50.60 E-value=85 Score=33.44 Aligned_cols=104 Identities=10% Similarity=0.152 Sum_probs=54.9
Q ss_pred CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcch
Q 012698 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (458)
Q Consensus 89 ~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~ 168 (458)
.-+.|||||||- ...|+.++++.+ ..+++..+++-+.-=. +|=. ...+
T Consensus 133 ~~p~~I~viTs~-~gAa~~D~~~~~----~~r~p~~~~~~~~~~v---------------------QG~~------A~~~ 180 (438)
T PRK00286 133 FFPKRIGVITSP-TGAAIRDILTVL----RRRFPLVEVIIYPTLV---------------------QGEG------AAAS 180 (438)
T ss_pred CCCCEEEEEeCC-ccHHHHHHHHHH----HhcCCCCeEEEecCcC---------------------cCcc------HHHH
Confidence 335699999973 344555555554 3445544554221111 1110 0122
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH---cCCCeeEe-eecccccCchh
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ---RGLKVAVA-GIPKTIDNDIP 224 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~---~~~~i~vv-gIPkTIDNDi~ 224 (458)
+-+.++.+.+.++|.++++=|-||...-..+.++.-. +.+++||| ||=--+|.=+.
T Consensus 181 i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~tl~ 240 (438)
T PRK00286 181 IVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDFTIA 240 (438)
T ss_pred HHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCccHH
Confidence 3333344444447999999999998775433332211 24556655 56666666444
No 140
>PRK12361 hypothetical protein; Provisional
Probab=50.41 E-value=32 Score=37.84 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (458)
.+..++++...+.+.|.++++|||||...+.. .+.. .++++--||.==-||+.
T Consensus 284 ~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~~--~~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 284 ISAEALAKQARKAGADIVIACGGDGTVTEVAS---ELVN--TDITLGIIPLGTANALS 336 (547)
T ss_pred ccHHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHhc--CCCCEEEecCCchhHHH
Confidence 44566676666778999999999999877553 2222 24567778976677766
No 141
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=50.40 E-value=27 Score=35.62 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHc-CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDR-GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~-~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
...+++.+.+++. +.|.+|-|||--.++.|..++.. + .+|+|.||-|..+|
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~--~~p~i~vPTt~~tg 112 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---R--GIPLSVPTTNLNDD 112 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---c--CCCEEEecCccccC
Confidence 4567777777776 59999999999999988877652 3 46899999997775
No 142
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=49.72 E-value=26 Score=36.46 Aligned_cols=50 Identities=30% Similarity=0.385 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHcCC----cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGI----NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I----~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+..+++++.+.+.++ |.++.|||--.+..|..++-.. .+ .+|+|.||-|.
T Consensus 71 ~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~r--g~p~i~VPTT~ 124 (354)
T cd08199 71 DTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RR--GTPYVRIPTTL 124 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cC--CCCEEEEcCcc
Confidence 457888999999999 9999999998888877776422 23 46899999995
No 143
>PRK05670 anthranilate synthase component II; Provisional
Probab=49.61 E-value=28 Score=32.55 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=24.2
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 176 l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
++.++.|+||+-||.|+...+....+.+++..-++||.||
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI 78 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV 78 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE
Confidence 3556789999999999875543333332222223566665
No 144
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=49.56 E-value=72 Score=30.38 Aligned_cols=91 Identities=21% Similarity=0.380 Sum_probs=61.3
Q ss_pred EEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---------CCcccCChhHHhchhhcCccccccCCC
Q 012698 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---------KNTINLTPKVVNDIHKRGGTILGTSRG 165 (458)
Q Consensus 95 aIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~---------~~~~~L~~~~v~~~~~~GGs~LGtsR~ 165 (458)
+++.+||+.+-.... +.+. .....++++-.|..=|++ |++=.++.+..+.+...|-.+.-....
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~~--~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~ 73 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKLW--KKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDE 73 (208)
T ss_pred CEEEECCcCCcchhH-----HHhh--ccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCC
Confidence 356778887744433 2222 233478999999877665 455556666666665554334443332
Q ss_pred c--chHHHHHHHHHHcCCcEEEEEcCCCc
Q 012698 166 G--HDTSKIVDSIQDRGINQVYIIGGDGT 192 (458)
Q Consensus 166 ~--~~~~~i~~~l~~~~I~~LvvIGGdgs 192 (458)
+ -|.+++++.+.+++.+-++++|+.|.
T Consensus 74 KD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 74 KDFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 2 37999999999999999999999998
No 145
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=49.41 E-value=2.3e+02 Score=26.57 Aligned_cols=85 Identities=14% Similarity=0.235 Sum_probs=50.2
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHHH
Q 012698 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (458)
Q Consensus 94 iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i~ 173 (458)
|||+...-..|-.+..+.++-+.+.. ++ .++. ++-+.+......+.+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~i 48 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE-NG-YQML-------------------------------LMNTNFSIEKEIEAL 48 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH-CC-CEEE-------------------------------EEeCCCCHHHHHHHH
Confidence 67887777778888888888777653 33 2332 111222223344667
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 174 ~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
+.|...++|++++.+.+.+.. +.+.+.+.++++-.++.
T Consensus 49 ~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~ipvv~~~~ 86 (259)
T cd01542 49 ELLARQKVDGIILLATTITDE----HREAIKKLNVPVVVVGQ 86 (259)
T ss_pred HHHHhcCCCEEEEeCCCCCHH----HHHHHhcCCCCEEEEec
Confidence 778889999999998764422 22334445655444443
No 146
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=49.41 E-value=18 Score=31.59 Aligned_cols=42 Identities=31% Similarity=0.451 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCC---eeEeeecccccCchh
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLK---VAVAGIPKTIDNDIP 224 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~---i~vvgIPkTIDNDi~ 224 (458)
..|.++++|||||...+.. .+.+...+ +++.-||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4679999999999887543 22222322 678888987788887
No 147
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=48.97 E-value=29 Score=32.22 Aligned_cols=90 Identities=12% Similarity=0.208 Sum_probs=52.0
Q ss_pred cccCCCcchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhc
Q 012698 160 LGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESI 239 (458)
Q Consensus 160 LGtsR~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~ 239 (458)
.+--|+++.+.+++++.++.+++.+|.+.|-...-. --++- ....||||+|-...+ +. -+|++......
T Consensus 33 ~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp-gvva~-----~t~~PVIgvP~~~~~-l~---G~daLlS~vqm- 101 (156)
T TIGR01162 33 VSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP-GMVAA-----LTPLPVIGVPVPSKA-LS---GLDSLLSIVQM- 101 (156)
T ss_pred ECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH-HHHHh-----ccCCCEEEecCCccC-CC---CHHHHHHHhcC-
Confidence 334477778889999999999988877766543221 11221 246789999975432 22 23333333332
Q ss_pred CCc--EEEEEec-CCcchhHHHHh
Q 012698 240 ENG--IGVVKLM-GRYCGFIAMYA 260 (458)
Q Consensus 240 ~~r--v~iVEvM-GR~~G~lA~~a 260 (458)
+.+ |..|=+= |.+++++|+..
T Consensus 102 P~gvpvatv~I~~~~nAa~~AaqI 125 (156)
T TIGR01162 102 PSGVPVATVAIGNAGNAALLAAQI 125 (156)
T ss_pred CCCCeeEEEEcCChhHHHHHHHHH
Confidence 444 4444333 55677777655
No 148
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=48.86 E-value=1.8e+02 Score=28.29 Aligned_cols=86 Identities=14% Similarity=0.039 Sum_probs=48.8
Q ss_pred EEEEEccCCC-CcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 93 HACIVTCGGL-CPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 93 ~iaIltsGG~-apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
||++++...+ ..|+...++.+++.+.+......++.............. . .+..............
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~ 67 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGE--Q-----------EVVRVIVLDNPLDYRR 67 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCc--c-----------cceeeeecCCchhHHH
Confidence 6888887776 789999999999988653222233333332222111100 0 1111111112234567
Q ss_pred HHHHHHHcCCcEEEEEcCCC
Q 012698 172 IVDSIQDRGINQVYIIGGDG 191 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdg 191 (458)
+.+.+++.+.|.+++.-..+
T Consensus 68 ~~~~~~~~~~dii~~~~~~~ 87 (366)
T cd03822 68 AARAIRLSGPDVVVIQHEYG 87 (366)
T ss_pred HHHHHhhcCCCEEEEeeccc
Confidence 77888999999888765433
No 149
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=48.81 E-value=33 Score=36.39 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHH-------H-------cC-----CCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR-------Q-------RG-----LKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~-------~-------~~-----~~i~vvgIPkTI 219 (458)
+..+++++.+++.++|.+|-|||--.++.|..++-... + ++ -.+|+|.||-|-
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 138 (414)
T cd08190 67 ESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTTA 138 (414)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCCC
Confidence 45788999999999999999999999998877652211 0 11 126899999994
No 150
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=47.69 E-value=1e+02 Score=27.22 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=37.8
Q ss_pred CCcccCChhHHhchhhcCccccccCCCc--chHHHHHHHHHHcCCcEEEEEcCCCc
Q 012698 139 KNTINLTPKVVNDIHKRGGTILGTSRGG--HDTSKIVDSIQDRGINQVYIIGGDGT 192 (458)
Q Consensus 139 ~~~~~L~~~~v~~~~~~GGs~LGtsR~~--~~~~~i~~~l~~~~I~~LvvIGGdgs 192 (458)
|++=.++.+..+.+...|-.++-.. .+ -|.+++++.+.+++.+-++++|+.|.
T Consensus 42 GDfDSi~~~~~~~~~~~~~~~~~~p-~kD~TD~e~Al~~~~~~~~~~i~v~Ga~Gg 96 (123)
T PF04263_consen 42 GDFDSISPEVLEFYKSKGVEIIHFP-EKDYTDLEKALEYAIEQGPDEIIVLGALGG 96 (123)
T ss_dssp C-SSSS-HHHHHHHHHCTTEEEEE--STTS-HHHHHHHHHHHTTTSEEEEES-SSS
T ss_pred ecCCCCChHHHHHHHhhccceeccc-ccccCHHHHHHHHHHHCCCCEEEEEecCCC
Confidence 4555677766666667766666555 32 37999999999999999999999997
No 151
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=47.30 E-value=70 Score=33.39 Aligned_cols=90 Identities=11% Similarity=0.133 Sum_probs=48.7
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC---cccCChhHHhchhhcCccccccCC-Ccch
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN---TINLTPKVVNDIHKRGGTILGTSR-GGHD 168 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~v~~~~~~GGs~LGtsR-~~~~ 168 (458)
||. +.+||...=+..+ ++.+.+.+.....+.+|+-.+ .+-+.. ..+++...+.++.. .|..-+ -..-
T Consensus 7 ki~-i~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~v~G~~~----~l~~~~~~~~~ 77 (385)
T TIGR00215 7 TIA-LVAGEASGDILGA--GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELSVMGLRE----VLGRLGRLLKI 77 (385)
T ss_pred eEE-EEeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhhhccHHH----HHHHHHHHHHH
Confidence 443 3345544447766 666666654444577776532 121111 23444444444321 121111 1123
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCC
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDG 191 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdg 191 (458)
+.++.+.+++.+.|.++.+||-+
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~ 100 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPD 100 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC
Confidence 56888999999999999999833
No 152
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=46.82 E-value=46 Score=29.00 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=46.4
Q ss_pred CChhHHhchhhcCccccccC----CC-cc-hHHHHHHHHHHcCCcEEEEEcC-CCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 144 LTPKVVNDIHKRGGTILGTS----RG-GH-DTSKIVDSIQDRGINQVYIIGG-DGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 144 L~~~~v~~~~~~GGs~LGts----R~-~~-~~~~i~~~l~~~~I~~LvvIGG-dgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
++..+...|. +||-++=|+ +. .+ ...+.++.|.+.++.+|.+--| +-. .--..+.+++.++++ |++.+|
T Consensus 31 ~e~~d~~~~l-~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP~~~i~~A~~~~l--Pli~ip 106 (123)
T PF07905_consen 31 MEAPDPSDWL-RGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIPEEIIELADELGL--PLIEIP 106 (123)
T ss_pred eecCCHHHhC-CCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCCHHHHHHHHHcCC--CEEEeC
Confidence 3444677774 455444343 22 23 3789999999999999999555 333 334556667766665 699999
Q ss_pred cc
Q 012698 217 KT 218 (458)
Q Consensus 217 kT 218 (458)
..
T Consensus 107 ~~ 108 (123)
T PF07905_consen 107 WE 108 (123)
T ss_pred CC
Confidence 84
No 153
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=46.60 E-value=37 Score=25.93 Aligned_cols=50 Identities=10% Similarity=0.303 Sum_probs=35.4
Q ss_pred cccCCCcchHHHHHHHHHHcCCcE------------EEEEcCCCchHHHHHHHHHHH-HcCCC
Q 012698 160 LGTSRGGHDTSKIVDSIQDRGINQ------------VYIIGGDGTQKGAAVIYEEIR-QRGLK 209 (458)
Q Consensus 160 LGtsR~~~~~~~i~~~l~~~~I~~------------LvvIGGdgs~~~a~~L~~~~~-~~~~~ 209 (458)
+|+-+...+.++.++.|++.+++. -|.+|.+.+...|..+.+.+. ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 556666677888889999998884 678899899888888888777 45544
No 154
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=46.16 E-value=21 Score=27.36 Aligned_cols=26 Identities=19% Similarity=0.458 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHH
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAA 197 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~ 197 (458)
.+.++.|++|+|| |+.||+-|+..|.
T Consensus 13 p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 13 PRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred hHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 4678899999999 6899999887554
No 155
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=46.08 E-value=35 Score=35.51 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+..+++++.+.+.+. |.++.|||--++..|..++-. -.+| ++.+.||.|.
T Consensus 60 ~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~-~~rg--i~~i~iPTTl 112 (346)
T cd08196 60 EAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASI-YMRG--VSWSFVPTTL 112 (346)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHH-HHcC--CCeEEecccH
Confidence 457899999999999 899999999888887776542 2345 4789999984
No 156
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=46.00 E-value=2.4e+02 Score=27.97 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=44.0
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i 172 (458)
||||+.. +.-|.++++++|+...|.. .+.. . +.+++. ..-+.+......++
T Consensus 1 ~v~i~~~-~~~~~~~~~~~gf~~~L~~-~g~~-------------~-~~~~~~-------------~~~a~~d~~~~~~~ 51 (294)
T PF04392_consen 1 KVGILQF-ISHPALDDIVRGFKDGLKE-LGYD-------------E-KNVEIE-------------YKNAEGDPEKLRQI 51 (294)
T ss_dssp EEEEEES-S--HHHHHHHHHHHHHHHH-TT---------------C-CCEEEE-------------EEE-TT-HHHHHHH
T ss_pred CeEEEEE-eccHHHHHHHHHHHHHHHH-cCCc-------------c-ccEEEE-------------EecCCCCHHHHHHH
Confidence 6888886 4788999999999988864 2321 1 111110 11112223457788
Q ss_pred HHHHHHcCCcEEEEEcCCCchH
Q 012698 173 VDSIQDRGINQVYIIGGDGTQK 194 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs~~ 194 (458)
++.|...+.|.++.+|.+-+..
T Consensus 52 ~~~l~~~~~DlIi~~gt~aa~~ 73 (294)
T PF04392_consen 52 ARKLKAQKPDLIIAIGTPAAQA 73 (294)
T ss_dssp HHHHCCTS-SEEEEESHHHHHH
T ss_pred HHHHhcCCCCEEEEeCcHHHHH
Confidence 8889999999888887665444
No 157
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=45.99 E-value=3e+02 Score=27.06 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=48.0
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
..|||+...-..|=.+.++.++-+.+.+ ++ .+++- .-+........+
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~~-~g-~~~~i-------------------------------~~~~~~~~~~~~ 106 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIATM-YK-YNIIL-------------------------------SNSDEDPEKEVQ 106 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCCHHHHHH
Confidence 4799998655557677777787776643 22 23320 001111122345
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
.++.|..+++|++++.+-..+.. +.+.+.+.+ +|+|.+
T Consensus 107 ~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~~ 144 (329)
T TIGR01481 107 VLNTLLSKQVDGIIFMGGTITEK----LREEFSRSP--VPVVLA 144 (329)
T ss_pred HHHHHHhCCCCEEEEeCCCCChH----HHHHHHhcC--CCEEEE
Confidence 66778889999999987543322 223344445 455544
No 158
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=45.90 E-value=1e+02 Score=30.75 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=63.3
Q ss_pred CcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC---cchHHHHHHHHHHc
Q 012698 103 CPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG---GHDTSKIVDSIQDR 179 (458)
Q Consensus 103 apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~---~~~~~~i~~~l~~~ 179 (458)
+|....-.+.+++.+.+..+..++.-+...+. +. ..+...-.+.+...|+.+.++.+. ..|+...+..++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~ 189 (340)
T cd06349 115 STSQAIEAPLLADYAVKDLGFKKVAILSVNTD--WG---RTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA 189 (340)
T ss_pred cCCcHHHHHHHHHHHHHHcCCcEEEEEecCCh--Hh---HHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhc
Confidence 34444445566666543344446554443332 11 111111222334567777766554 35788899999999
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
+-|++++.|..+ .+..+.+.+.+.|++.++++.-.+
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~ 225 (340)
T cd06349 190 NPDAIILISYYN---DGAPIARQARAVGLDIPVVASSSV 225 (340)
T ss_pred CCCEEEEccccc---hHHHHHHHHHHcCCCCcEEccCCc
Confidence 999998877543 344566777778988888765433
No 159
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.58 E-value=86 Score=26.04 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhccc
Q 012698 226 QRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGS 264 (458)
Q Consensus 226 ~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~ 264 (458)
..+...+...|......+.+. +.+|+-++..+|+.
T Consensus 61 H~~~~~vk~~akk~~ip~~~~----~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 61 HNAMWKVKKAAKKYGIPIIYS----RSRGVSSLERALER 95 (97)
T ss_pred hHHHHHHHHHHHHcCCcEEEE----CCCCHHHHHHHHHh
Confidence 345556666666644445444 56777777777653
No 160
>PRK10586 putative oxidoreductase; Provisional
Probab=45.36 E-value=28 Score=36.32 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCch
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (458)
++.+++.+..+ .+.|.+|-|||--++..|..++.. .++|+|.||-|-.+|-
T Consensus 74 ~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s 124 (362)
T PRK10586 74 SDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCA 124 (362)
T ss_pred HHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccc
Confidence 34555655554 589999999999999999988753 3578999999977763
No 161
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=44.57 E-value=2.7e+02 Score=26.07 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=50.9
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHHH
Q 012698 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (458)
Q Consensus 94 iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i~ 173 (458)
||++..+-.-|.....++++-+.+.. ++ .+++-+. +........+++
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~~ 48 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEA-AG-YQLLLGN-------------------------------TGYSPEREEELL 48 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHH-cC-CEEEEec-------------------------------CCCCchhHHHHH
Confidence 67888777778888888888777753 33 2333111 111122345778
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 174 ~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
+.|...++|++++.+-+.+- .. .+.+.+.+ +|+|.+
T Consensus 49 ~~l~~~~vdgiii~~~~~~~-~~---~~~~~~~~--ipvv~~ 84 (268)
T cd01575 49 RTLLSRRPAGLILTGLEHTE-RT---RQLLRAAG--IPVVEI 84 (268)
T ss_pred HHHHHcCCCEEEEeCCCCCH-HH---HHHHHhcC--CCEEEE
Confidence 88889999999999877552 22 22233334 567765
No 162
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=44.39 E-value=3.2e+02 Score=26.90 Aligned_cols=67 Identities=7% Similarity=0.044 Sum_probs=42.4
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
..||++...-.-|-.+.++.++.+.+.+ ++ ..++- .-+........+
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~~i~~~~~~-~g-y~~~i-------------------------------~~~~~~~~~~~~ 107 (327)
T TIGR02417 61 RTIGLVIPDLENYSYARIAKELEQQCRE-AG-YQLLI-------------------------------ACSDDNPDQEKV 107 (327)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHH-CC-CEEEE-------------------------------EeCCCCHHHHHH
Confidence 5899998655567777788888777753 33 23330 001111122346
Q ss_pred HHHHHHHcCCcEEEEEcCCC
Q 012698 172 IVDSIQDRGINQVYIIGGDG 191 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdg 191 (458)
.++.|..+++|++++.+.+.
T Consensus 108 ~~~~l~~~~vdgiIi~~~~~ 127 (327)
T TIGR02417 108 VIENLLARQVDALIVASCMP 127 (327)
T ss_pred HHHHHHHcCCCEEEEeCCCC
Confidence 67788899999999988654
No 163
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=43.94 E-value=3.3e+02 Score=26.81 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=41.4
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
..||++...-.-|-.+.+++++...+.+ ++ .+++ +.-|........+
T Consensus 60 ~~Ig~i~~~~~~~~~~~~~~~i~~~~~~-~g-y~~~-------------------------------i~~~~~~~~~~~~ 106 (311)
T TIGR02405 60 KVVAVIVSRLDSPSENLAVSGMLPVFYT-AG-YDPI-------------------------------IMESQFSPQLTNE 106 (311)
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHH-CC-CeEE-------------------------------EecCCCChHHHHH
Confidence 4799998654556677788888777653 23 2332 0111222223345
Q ss_pred HHHHHHHcCCcEEEEEcCC
Q 012698 172 IVDSIQDRGINQVYIIGGD 190 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGd 190 (458)
..+.|..+++|++|+.+..
T Consensus 107 ~~~~l~~~~vdGvIi~~~~ 125 (311)
T TIGR02405 107 HLSVLQKRNVDGVILFGFT 125 (311)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 6777899999999999754
No 164
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=43.50 E-value=37 Score=31.83 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=25.5
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 174 ~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
+.+.+++.|+||+-||.|+......-.+.+++..-++||.||
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI 78 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV 78 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE
Confidence 345677899999999999875422111222222225677776
No 165
>PRK05637 anthranilate synthase component II; Provisional
Probab=43.50 E-value=50 Score=31.70 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=28.0
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 174 ~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
+.+++.+.+++|+-||-|+...+....+.++...-++||.||
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI 79 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI 79 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE
Confidence 444577899999999999997765443333322224677776
No 166
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=43.07 E-value=20 Score=35.71 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCch
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (458)
...+++.+.++..+.|.++-+||--..+.+...+.. .++|.+.||-+.+||=
T Consensus 62 ~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~-----~~~p~isVPTa~S~DG 113 (250)
T PF13685_consen 62 DEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFE-----LGIPFISVPTAASHDG 113 (250)
T ss_dssp HHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHH-----HT--EEEEES--SSGG
T ss_pred HHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecccccccc
Confidence 346778888888899999999997777766665543 2578999999999983
No 167
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=42.91 E-value=40 Score=34.91 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHcC---CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRG---INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~---I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+..+++++.+.+++ .|.++.|||--.+..|..++... .+ .+|+|.||-|.
T Consensus 67 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~r--gip~i~VPTTl 119 (344)
T cd08169 67 ETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FR--GIAFIRVPTTL 119 (344)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-cc--CCcEEEecCCc
Confidence 35778888899887 89999999998888887776432 23 46899999994
No 168
>PLN02834 3-dehydroquinate synthase
Probab=42.51 E-value=45 Score=35.85 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHcCCc---EEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~---~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+..+++++.+.++++| .+|.|||--.+..|..++-.. .+ .+|+|.||-|.
T Consensus 147 ~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~r--giplI~VPTTl 199 (433)
T PLN02834 147 ETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QR--GVNFVQIPTTV 199 (433)
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cC--CCCEEEECCcC
Confidence 4577888999999998 999999999888887665322 23 46899999993
No 169
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=42.17 E-value=42 Score=35.00 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHcCCc---EEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~---~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
...+++++.++++++| .++.|||--.+..|..++-.. .+ .+|+|.||-|.
T Consensus 68 ~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~r--gip~I~IPTTl 120 (355)
T cd08197 68 STLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FR--GIRLVHIPTTL 120 (355)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-cc--CCCEEEecCcc
Confidence 4578899999999999 999999988888877665322 13 46899999984
No 170
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=41.98 E-value=45 Score=29.38 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
.+++...++++|.++++.||+-|..+.. .++++|.++-+++.+...+.
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i~---~lr~~G~~V~v~~~~~~~s~ 137 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLVE---RLRELGKRVIVVGFEAKTSR 137 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHHH---HHHHcCCEEEEEccCccChH
Confidence 3455566669999999999999987654 44557988888888734333
No 171
>CHL00101 trpG anthranilate synthase component 2
Probab=41.89 E-value=36 Score=31.93 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.1
Q ss_pred HHHHcCCcEEEEEcCCCchHH
Q 012698 175 SIQDRGINQVYIIGGDGTQKG 195 (458)
Q Consensus 175 ~l~~~~I~~LvvIGGdgs~~~ 195 (458)
.+.+.++|++|+.||.|+...
T Consensus 38 ~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 38 KIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred HHhhCCCCEEEECCCCCChHH
Confidence 345678999999999998754
No 172
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.65 E-value=3.1e+02 Score=25.92 Aligned_cols=91 Identities=22% Similarity=0.306 Sum_probs=52.7
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHHH
Q 012698 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (458)
Q Consensus 94 iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i~ 173 (458)
|||+...-..|-.+.+++++-..+.+ ++ .+++- .-+....+...+.+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~-------------------------------~~~~~~~~~~~~~i 48 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQ-YG-YTVLL-------------------------------CNTYRGGVSEADYV 48 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHH-CC-CEEEE-------------------------------EeCCCChHHHHHHH
Confidence 67777766778888888888877753 33 23320 00111223345778
Q ss_pred HHHHHcCCcEEEEEcCCCchH-HHHHHHHHHHHcCCCeeEeeecccc
Q 012698 174 DSIQDRGINQVYIIGGDGTQK-GAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 174 ~~l~~~~I~~LvvIGGdgs~~-~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+.|...++|++++.+.+-... ......+.+.+++ +|||.+=...
T Consensus 49 ~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~--ipvV~i~~~~ 93 (273)
T cd06292 49 EDLLARGVRGVVFISSLHADTHADHSHYERLAERG--LPVVLVNGRA 93 (273)
T ss_pred HHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCC--CCEEEEcCCC
Confidence 999999999999998543221 1111223344445 4566554333
No 173
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=40.94 E-value=3.2e+02 Score=25.79 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
....++.+.|..+++|++++.+.+..-.. + +.+.+.+ +|||.+
T Consensus 42 ~~~~~~i~~l~~~~vdgiii~~~~~~~~~---~-~~~~~~~--ipvV~~ 84 (264)
T cd06274 42 ETERETVETLIARQVDALIVAGSLPPDDP---Y-YLCQKAG--LPVVAL 84 (264)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCchHH---H-HHHHhcC--CCEEEe
Confidence 34557888899999999999987643221 2 2334445 456655
No 174
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=40.46 E-value=37 Score=29.53 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
.+.+.+.+..++.++++-||+-|..+.. .++++|.++-+++.|...+.+
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v~---~l~~~g~~V~v~~~~~~~s~~ 134 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLVR---KLRERGKRVIVVGAEDSASEA 134 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHHH---HHHHH--EEEEEE-GGGS-HH
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHHH---HHHHcCCEEEEEEeCCCCCHH
Confidence 3344444456799999999999877553 445678888888865554443
No 175
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=40.33 E-value=91 Score=30.87 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=48.0
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
+.|+.++ ||... ++..+++.+.+.| +.++.|.++||-.- + -....++.|...+-.+|=.+=+.+..|
T Consensus 105 ~~~v~ll--G~~~~----v~~~a~~~l~~~y-~l~i~g~~~Gyf~~---~---e~~~i~~~I~~s~~dil~VglG~PkQE 171 (243)
T PRK03692 105 GTPVFLV--GGKPE----VLAQTEAKLRTQW-NVNIVGSQDGYFTP---E---QRQALFERIHASGAKIVTVAMGSPKQE 171 (243)
T ss_pred CCeEEEE--CCCHH----HHHHHHHHHHHHh-CCEEEEEeCCCCCH---H---HHHHHHHHHHhcCCCEEEEECCCcHHH
Confidence 4577666 55444 5555556665568 67999999998531 0 012245666666665543322223333
Q ss_pred HHHH-HHHHcCCcEEEEEcC
Q 012698 171 KIVD-SIQDRGINQVYIIGG 189 (458)
Q Consensus 171 ~i~~-~l~~~~I~~LvvIGG 189 (458)
..+. +....+...++.+||
T Consensus 172 ~~~~~~~~~~~~~v~~gvGg 191 (243)
T PRK03692 172 IFMRDCRLVYPDALYMGVGG 191 (243)
T ss_pred HHHHHHHHhCCCCEEEEeCe
Confidence 3333 344446666777777
No 176
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.28 E-value=1.7e+02 Score=25.92 Aligned_cols=40 Identities=15% Similarity=0.366 Sum_probs=29.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh
Q 012698 183 QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 183 ~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (458)
.+++|=+|..=+.-..|++ +++|+ .+.+.|=|+-|++++.
T Consensus 2 t~vliR~Ds~~Kil~ALaD-leRya-giki~gkPrii~p~~a 41 (125)
T COG1844 2 TIVLIRADSYDKILTALAD-LERYA-GIKIRGKPRIIPPELA 41 (125)
T ss_pred eEEEEecCcHHHHHHHHHH-HHHhc-CceeecCCcccChhhH
Confidence 4677888877666666765 34555 4779999999999986
No 177
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=39.87 E-value=2.6e+02 Score=26.18 Aligned_cols=80 Identities=10% Similarity=0.104 Sum_probs=48.6
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHHH
Q 012698 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (458)
Q Consensus 94 iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i~ 173 (458)
|||+...-..|-.+.+++++.+.+.+ ++ .++.-+. +........+++
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~~ 48 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARA-AG-YSLLLAT-------------------------------TDYDAEREADAV 48 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHH-CC-CEEEEee-------------------------------CCCCHHHHHHHH
Confidence 67777666678889999999888754 33 3443110 111112344677
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCC
Q 012698 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (458)
Q Consensus 174 ~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (458)
+.|...++|++++..++.... ...+.+.+.+++
T Consensus 49 ~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~~ip 81 (266)
T cd06282 49 ETLLRQRVDGLILTVADAATS---PALDLLDAERVP 81 (266)
T ss_pred HHHHhcCCCEEEEecCCCCch---HHHHHHhhCCCC
Confidence 778889999999987765322 123444455544
No 178
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=39.52 E-value=4.1e+02 Score=26.68 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=54.6
Q ss_pred CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcc-
Q 012698 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH- 167 (458)
Q Consensus 89 ~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~- 167 (458)
.+..+||++...-.-|-.+.++.++.+.+.+ +++..++ +.++....
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~ 68 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKA-APDVQLL--------------------------------MNDSQNDQS 68 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHH
Confidence 4557899888666678888888888887754 3322222 11222222
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
...+.++.|...++|++++.+.+..... ..+ +.+.+.+++ +|.+
T Consensus 69 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~giP--vV~v 112 (330)
T PRK15395 69 KQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQDVP--VVFF 112 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCCCc--EEEE
Confidence 2335677899999999999987754332 223 344445654 5544
No 179
>PLN02204 diacylglycerol kinase
Probab=38.67 E-value=42 Score=37.62 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=43.2
Q ss_pred cEEEEEcccccccccCCcccCChhHHhchhhcCc---cccccCCCcchHHHHH--HHHHHcCCcEEEEEcCCCchHHHH
Q 012698 124 SKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGG---TILGTSRGGHDTSKIV--DSIQDRGINQVYIIGGDGTQKGAA 197 (458)
Q Consensus 124 ~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GG---s~LGtsR~~~~~~~i~--~~l~~~~I~~LvvIGGdgs~~~a~ 197 (458)
.+++-|.|=+.|= +.- .-.|+.|..+....| .++-|.|.+...+.+. ..+...+.|++|++||||++..+.
T Consensus 160 k~llVivNP~sGk--g~~-~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 160 KNLLVFVHPLSGK--GSG-SRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred ceEEEEECCCCCC--cch-HHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHH
Confidence 3666677766552 221 123666777776666 3566777654333222 222356789999999999987543
No 180
>PRK06186 hypothetical protein; Validated
Probab=38.02 E-value=40 Score=33.21 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCc--hHHHHHHHHHHHHcCCCeeEeee
Q 012698 180 GINQVYIIGGDGT--QKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 180 ~I~~LvvIGGdgs--~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
++|+++|.||+|. ..+.....+++++++ ||+.||
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LGI 88 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLGT 88 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEee
Confidence 5799999999997 445556667776654 557766
No 181
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=37.81 E-value=81 Score=31.99 Aligned_cols=40 Identities=13% Similarity=0.356 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCC
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (458)
++++.+..|.+ .+|.++||||..|-. ..+|++-+++.+.+
T Consensus 198 ~RQ~a~~~La~-~vD~miVIGg~~SsN-T~kL~eia~~~~~~ 237 (281)
T PF02401_consen 198 NRQEAARELAK-EVDAMIVIGGKNSSN-TRKLAEIAKEHGKP 237 (281)
T ss_dssp HHHHHHHHHHC-CSSEEEEES-TT-HH-HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHh-hCCEEEEecCCCCcc-HHHHHHHHHHhCCC
Confidence 46777777765 699999999999955 57788888877654
No 182
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=37.76 E-value=2.2e+02 Score=23.06 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=47.4
Q ss_pred EEEccCCCCc-chhHHHHHHHHHHHHhcCCcEE-EEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHH
Q 012698 95 CIVTCGGLCP-GLNTVIREIVCGLYHMYGVSKI-LGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (458)
Q Consensus 95 aIltsGG~ap-GmNavIr~~v~~~~~~~~~~~v-~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i 172 (458)
.++.=|.+-| ..|..++.+.+.+.+..+...+ +|+.+. ..++++.+
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~--------------------------------~~P~i~~~ 50 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG--------------------------------LGPDTEEA 50 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC--------------------------------CCCCHHHH
Confidence 3444577777 8999999999888654432222 122221 34668888
Q ss_pred HHHHHHcCCcEEEEE-----cCCCch-HHHHHHHHHH
Q 012698 173 VDSIQDRGINQVYII-----GGDGTQ-KGAAVIYEEI 203 (458)
Q Consensus 173 ~~~l~~~~I~~LvvI-----GGdgs~-~~a~~L~~~~ 203 (458)
++.|++.+++-++++ -|..+. +....+.+..
T Consensus 51 l~~l~~~g~~~vvvvPl~~~~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 51 IRELAEEGYQRVVIVPLAPVSGDEVFYDIDSEIGLVR 87 (101)
T ss_pred HHHHHHcCCCeEEEEeCccccChhhHHHHHHHHHHHH
Confidence 999999898887664 355554 3334444433
No 183
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=37.31 E-value=1.7e+02 Score=25.25 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCc---hHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcCCcEEEE
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGT---QKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVV 246 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs---~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~rv~iV 246 (458)
..=++.|++.|+..+|.+-.|+- .-....+.+.+++.|+ ..+.||-+-++ +. .+.+......-.+.++.|++-
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl--~y~~iPv~~~~-~~-~~~v~~f~~~l~~~~~Pvl~h 92 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGL--QYVHIPVDGGA-IT-EEDVEAFADALESLPKPVLAH 92 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT---EEEE----TTT----HHHHHHHHHHHHTTTTSEEEE
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCC--eEEEeecCCCC-CC-HHHHHHHHHHHHhCCCCEEEE
Confidence 34456789999999999987743 2233345566666675 58999999765 43 222222222222234579999
Q ss_pred EecCCcchhHHHHh
Q 012698 247 KLMGRYCGFIAMYA 260 (458)
Q Consensus 247 EvMGR~~G~lA~~a 260 (458)
--.|+.++-|-+.+
T Consensus 93 C~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 93 CRSGTRASALWALA 106 (110)
T ss_dssp -SCSHHHHHHHHHH
T ss_pred CCCChhHHHHHHHH
Confidence 99999888776543
No 184
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=36.45 E-value=76 Score=32.49 Aligned_cols=41 Identities=12% Similarity=0.271 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCe
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i 210 (458)
++++.+..|-+ ..|.+|||||..|-.+ .+|++.+++.+.+.
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t 239 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPA 239 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCE
Confidence 46777777765 6999999999999875 56778887766443
No 185
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=36.27 E-value=4.2e+02 Score=25.87 Aligned_cols=86 Identities=13% Similarity=0.232 Sum_probs=49.9
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTSK 171 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~~~ 171 (458)
+||++...=.-|-...+++++-+.+.+ ++ .++. +++.+.. .+...+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g-~~v~-------------------------------~~~~~~~d~~~~~~ 47 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LG-VDAI-------------------------------YVGPTTADAAGQVQ 47 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hC-CeEE-------------------------------EECCCCCCHHHHHH
Confidence 477777655567888888888887754 33 2332 1122221 233456
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
.++.+...++|++++.+.+.+ ....+.+.+.+.++ |||.+
T Consensus 48 ~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~~i--PvV~v 87 (298)
T cd06302 48 IIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREAGI--KVVTH 87 (298)
T ss_pred HHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHCCC--eEEEE
Confidence 677778889999999875532 12233344444554 45544
No 186
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=36.18 E-value=31 Score=31.73 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=45.3
Q ss_pred ccCCCcchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcC
Q 012698 161 GTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIE 240 (458)
Q Consensus 161 GtsR~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~ 240 (458)
+--|+++.+.+.++++++.+++.+|.+-|-...-. -.++-. ...||||+|-. ...+...+++..+ ..++
T Consensus 36 saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp-gvva~~-----t~~PVIgvP~~-~~~~~g~d~l~S~----vqMp 104 (150)
T PF00731_consen 36 SAHRTPERLLEFVKEYEARGADVIIAVAGMSAALP-GVVASL-----TTLPVIGVPVS-SGYLGGLDSLLSI----VQMP 104 (150)
T ss_dssp -TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HH-HHHHHH-----SSS-EEEEEE--STTTTTHHHHHHH----HT--
T ss_pred eccCCHHHHHHHHHHhccCCCEEEEEECCCcccch-hhheec-----cCCCEEEeecC-cccccCcccHHHH----Hhcc
Confidence 33466677788888888888888887766644332 223221 36789999944 3334333333322 2445
Q ss_pred CcEEEEEecC----CcchhHHHHh
Q 012698 241 NGIGVVKLMG----RYCGFIAMYA 260 (458)
Q Consensus 241 ~rv~iVEvMG----R~~G~lA~~a 260 (458)
.++. |=+|+ .+++.+|...
T Consensus 105 ~g~p-vatv~i~~~~nAA~~A~~I 127 (150)
T PF00731_consen 105 SGVP-VATVGINNGFNAALLAARI 127 (150)
T ss_dssp TTS---EE-SSTHHHHHHHHHHHH
T ss_pred CCCC-ceEEEccCchHHHHHHHHH
Confidence 5554 35566 4555555443
No 187
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=36.07 E-value=3.6e+02 Score=25.02 Aligned_cols=87 Identities=10% Similarity=0.167 Sum_probs=49.5
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i 172 (458)
|||++...-..|..+.+++++-..+.+ .+ .++. +.-+........+.
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~ 47 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKE-LG-VELI-------------------------------VLDAQNDVSKQIQQ 47 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHh-cC-ceEE-------------------------------EECCCCCHHHHHHH
Confidence 578888766788888888888777643 11 1211 01111112234466
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
++.|...++|++++.+.+.... ....+++.+.+ +|+|.+=
T Consensus 48 ~~~l~~~~vdgvi~~~~~~~~~--~~~~~~l~~~~--ip~V~~~ 87 (267)
T cd01536 48 IEDLIAQGVDGIIISPVDSAAL--TPALKKANAAG--IPVVTVD 87 (267)
T ss_pred HHHHHHcCCCEEEEeCCCchhH--HHHHHHHHHCC--CcEEEec
Confidence 7777788999999987653321 11223344444 4555543
No 188
>PRK09492 treR trehalose repressor; Provisional
Probab=36.04 E-value=4.2e+02 Score=25.84 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=41.5
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
.+||++...-.-|-.+.+++++...+.+ ++ .+++- +-+........+
T Consensus 63 ~~Ig~i~~~~~~~~~~~~~~~i~~~~~~-~g-y~~~~-------------------------------~~~~~~~~~~~~ 109 (315)
T PRK09492 63 KVVGIIVSRLDSLSENQAVRTMLPAFYE-QG-YDPII-------------------------------MESQFSPEKVNE 109 (315)
T ss_pred CeEEEEecCCcCcccHHHHHHHHHHHHH-cC-CeEEE-------------------------------EecCCChHHHHH
Confidence 4799998765667788888888877753 23 23220 001111122345
Q ss_pred HHHHHHHcCCcEEEEEcC
Q 012698 172 IVDSIQDRGINQVYIIGG 189 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGG 189 (458)
.++.|...++|++++.+-
T Consensus 110 ~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 110 HLGVLKRRNVDGVILFGF 127 (315)
T ss_pred HHHHHHhcCCCEEEEeCC
Confidence 677888999999999874
No 189
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=35.61 E-value=42 Score=31.37 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 175 SIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 175 ~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
.+++++.|++|+-||-++-.-.......++....++||.||
T Consensus 38 ~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI 78 (191)
T PRK06774 38 DIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV 78 (191)
T ss_pred HHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE
Confidence 35677899999999998864332211222222235667776
No 190
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=35.25 E-value=4.4e+02 Score=25.83 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
.....++.|..+++|++++...+... .....+++.+.++ |||.+
T Consensus 45 ~q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~gi--PvV~~ 88 (303)
T cd01539 45 TQNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKNI--PVIFF 88 (303)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCCC--CEEEe
Confidence 34577888999999999998866431 1223344444454 56654
No 191
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=34.75 E-value=71 Score=37.30 Aligned_cols=33 Identities=12% Similarity=0.293 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHH
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~ 200 (458)
..+++++.+++.++|.+|-|||--+++.|..++
T Consensus 527 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 527 TVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 478889999999999999999999999988775
No 192
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.62 E-value=4e+02 Score=25.10 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCC
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDG 191 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdg 191 (458)
..+.++.+...++|++++.+.+.
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~ 67 (275)
T cd06317 45 QAAQVEDLIAQKVDGIILWPTDG 67 (275)
T ss_pred HHHHHHHHHHcCCCEEEEecCCc
Confidence 34567777888999999988764
No 193
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=33.97 E-value=63 Score=27.91 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=61.0
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcC-ccccccCCCcchHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRG-GTILGTSRGGHDTS 170 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~G-Gs~LGtsR~~~~~~ 170 (458)
+||.|+.+|-. ++|. ++++++ .+ .+.+.++.=- +-.-..+...+.....+ ++ ..+.-.+.+
T Consensus 3 kkvLIanrGei------a~r~-~ra~r~-~G-i~tv~v~s~~------d~~s~~~~~ad~~~~~~~~~---~~~~yl~~e 64 (110)
T PF00289_consen 3 KKVLIANRGEI------AVRI-IRALRE-LG-IETVAVNSNP------DTVSTHVDMADEAYFEPPGP---SPESYLNIE 64 (110)
T ss_dssp SEEEESS-HHH------HHHH-HHHHHH-TT-SEEEEEEEGG------GTTGHHHHHSSEEEEEESSS---GGGTTTSHH
T ss_pred CEEEEECCCHH------HHHH-HHHHHH-hC-CcceeccCch------hcccccccccccceecCcch---hhhhhccHH
Confidence 47888887655 3443 456654 34 4666555411 11122222223333333 22 112235789
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
++++..++.++++ +.||-|.+.-...|++.+.+.|+ .++|-
T Consensus 65 ~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 65 AIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp HHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred HHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 9999999997766 55999999999999999988775 46664
No 194
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.86 E-value=1.8e+02 Score=26.89 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=26.0
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccc
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYR 134 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~ 134 (458)
+.+|.++ ||. |+ ++..+...+.+.|++.++.|.++||-
T Consensus 48 ~~~ifll--G~~-~~---~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 48 GKRIFLL--GGS-EE---VLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred CCeEEEE--eCC-HH---HHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3466655 444 43 45555556666799999999999976
No 195
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=33.75 E-value=81 Score=34.21 Aligned_cols=46 Identities=9% Similarity=0.245 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEe
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVA 213 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vv 213 (458)
.+++.++..|-...+|.+|||||.-|-.+ .+|.+.+++++.+.-.|
T Consensus 349 qeRQdA~~~L~~~~vDlmiVVGG~NSSNT-~~L~eIa~~~g~~sy~I 394 (460)
T PLN02821 349 QERQDAMYKLVEEKLDLMLVVGGWNSSNT-SHLQEIAEHKGIPSYWI 394 (460)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHHhCCCEEEE
Confidence 35677778886678999999999999876 45778777766543333
No 196
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=33.72 E-value=84 Score=31.14 Aligned_cols=88 Identities=26% Similarity=0.396 Sum_probs=52.1
Q ss_pred EEEEEcccccccccCCcccCChhHHhchhhcCc--cccc-cCCC--cchHHHHHHHHHHcCCcEEEEEcCCCchH-----
Q 012698 125 KILGIDGGYRGFYSKNTINLTPKVVNDIHKRGG--TILG-TSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQK----- 194 (458)
Q Consensus 125 ~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GG--s~LG-tsR~--~~~~~~i~~~l~~~~I~~LvvIGGdgs~~----- 194 (458)
..+-+.++-.| .....++.....+...+| .+.. |+|. ...++..+..+...||+.+++++||-.-.
T Consensus 30 d~v~Vt~~~~g----~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~ 105 (274)
T cd00537 30 DFVSVTDGAGG----STRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPG 105 (274)
T ss_pred CEEEeCCCCCC----chhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCC
Confidence 34445554443 122334444555555555 1111 3343 35688889999999999999999986543
Q ss_pred -------HHHHHHHHHHHc---CCCeeEeeec
Q 012698 195 -------GAAVIYEEIRQR---GLKVAVAGIP 216 (458)
Q Consensus 195 -------~a~~L~~~~~~~---~~~i~vvgIP 216 (458)
.|..|.+..++. ++.+.+.+.|
T Consensus 106 ~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 106 AKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 366666666553 4555555555
No 197
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=33.10 E-value=64 Score=35.18 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 168 ~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
..+++++.|.++++ |.++.+||--....|.-++... .+| |+.|.||-|+
T Consensus 222 ~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y-~RG--i~~i~vPTTl 273 (488)
T PRK13951 222 HVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTF-KRG--VGLSFYPTTL 273 (488)
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-hcC--CCeEecCccH
Confidence 57899999999999 9999999988888776665433 356 5699999994
No 198
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=32.94 E-value=4e+02 Score=25.04 Aligned_cols=66 Identities=9% Similarity=0.194 Sum_probs=42.1
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHHHH
Q 012698 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (458)
Q Consensus 94 iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~i~ 173 (458)
|||+...-.-|=.+.++.++-..+.+ ++ .+++ ++-+........+.+
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~i 48 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYR-QG-YNLI-------------------------------LCNTEGDPERQRSYL 48 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHH-cC-CEEE-------------------------------EEeCCCChHHHHHHH
Confidence 67777665667777777777766643 22 2332 111222223455778
Q ss_pred HHHHHcCCcEEEEEcCCCc
Q 012698 174 DSIQDRGINQVYIIGGDGT 192 (458)
Q Consensus 174 ~~l~~~~I~~LvvIGGdgs 192 (458)
+.|..+++|++++.+.+..
T Consensus 49 ~~l~~~~vdgiii~~~~~~ 67 (269)
T cd06275 49 RMLAQKRVDGLLVMCSEYD 67 (269)
T ss_pred HHHHHcCCCEEEEecCCCC
Confidence 8899999999999997754
No 199
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=32.92 E-value=78 Score=33.45 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHcCCc---EEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 168 DTSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~---~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
..+++.+.+++++.+ .++.|||--+...|..++-. ..+| +|+|.||-|
T Consensus 96 ~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT 146 (389)
T PRK06203 96 LVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC
Confidence 378899999999998 99999999888887766532 2234 689999999
No 200
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=32.91 E-value=5.5e+02 Score=26.22 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=87.2
Q ss_pred EEccCCCCcchh-HHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCc-cccccCCC-----cch
Q 012698 96 IVTCGGLCPGLN-TVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGG-TILGTSRG-----GHD 168 (458)
Q Consensus 96 IltsGG~apGmN-avIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GG-s~LGtsR~-----~~~ 168 (458)
|+.|||+.==++ .-+..+++.+.. .+..+. ++-+-+..+..- ..++.+.++.+...|= ..+++.-. .+.
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~-i~~v~~--iri~Tr~~v~~p-~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAA-IDHVKI--VRFHTRVPVADP-ARVTPALIAALKTSGKTVYVALHANHARELTAE 215 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHh-CCCccE--EEEeCCCcccCh-hhcCHHHHHHHHHcCCcEEEEecCCChhhcCHH
Confidence 677888866553 568888887754 332222 333444432211 2356666665555541 12333221 245
Q ss_pred HHHHHHHHHHcCCcEEE---EE-cCCCchHHHHHHHHHHHHcCCC----eeEeeecccccCchh---HHHHHHHHHHHhh
Q 012698 169 TSKIVDSIQDRGINQVY---II-GGDGTQKGAAVIYEEIRQRGLK----VAVAGIPKTIDNDIP---AQRAINAAHVEAE 237 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~Lv---vI-GGdgs~~~a~~L~~~~~~~~~~----i~vvgIPkTIDNDi~---a~~ai~~i~~~A~ 237 (458)
..+.++.|++.||..+. ++ |=|++......|.+.+.+.|.. -.+.-+|.|-.-+++ +.+.+..++...+
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~ 295 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRIS 295 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCC
Confidence 67888999999997643 44 5567777777787777776653 123344556666666 3445555544444
Q ss_pred hcCCcEEEEEecCCc
Q 012698 238 SIENGIGVVKLMGRY 252 (458)
Q Consensus 238 s~~~rv~iVEvMGR~ 252 (458)
+.-..-+++|+.|..
T Consensus 296 g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 296 GLAQPTYVLDIPGGH 310 (321)
T ss_pred CCcceeEEEeCCCCC
Confidence 433346788888753
No 201
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.73 E-value=4.3e+02 Score=24.89 Aligned_cols=83 Identities=10% Similarity=0.167 Sum_probs=47.8
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccC-CCcchHHHH
Q 012698 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS-RGGHDTSKI 172 (458)
Q Consensus 94 iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGts-R~~~~~~~i 172 (458)
|||+...=+-|-++.++.++.+.+.+ ++. +++ +.++ .........
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~-~~~-~~~--------------------------------~~~~~~~~~~~~~~ 47 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAE-RGY-STF--------------------------------VANTGDNPDAQRRA 47 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCCHHHHHHH
Confidence 56666544567788888888887754 332 222 1111 111234467
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
++.+..+++|++++.+-+.... .+ +++.+.++ |||.+=
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~---~~-~~~~~~~i--Pvv~~~ 85 (265)
T cd06285 48 IEMLLDRRVDGLILGDARSDDH---FL-DELTRRGV--PFVLVL 85 (265)
T ss_pred HHHHHHcCCCEEEEecCCCChH---HH-HHHHHcCC--CEEEEc
Confidence 7888999999999987554432 23 33444454 455443
No 202
>PLN02335 anthranilate synthase
Probab=32.19 E-value=66 Score=31.16 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=26.5
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 176 l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
++.++.|++|+-||-++-.......+..++.+-.+||.||
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI 97 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV 97 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe
Confidence 4557899999999999876533333444444445677776
No 203
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.56 E-value=4.4e+02 Score=24.73 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
...+.++.|...++|++++...+..-. . .+.+.+++ +|||.+=.+
T Consensus 43 ~~~~~i~~l~~~~~dgiii~~~~~~~~---~-~~~~~~~~--ipvV~i~~~ 87 (270)
T cd06296 43 PERQWVERLSARRTDGVILVTPELTSA---Q-RAALRRTG--IPFVVVDPA 87 (270)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCChH---H-HHHHhcCC--CCEEEEecc
Confidence 345677888999999999988764322 2 23344444 566665433
No 204
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=31.37 E-value=1e+02 Score=32.68 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCC
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGL 208 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~ 208 (458)
.+++..+..|-..++|.++||||--|-.+ .+|++.+++.+.
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSSNT-~rL~eia~~~g~ 315 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSSNT-THLQEIAIERGI 315 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHhcCC
Confidence 45778888887778999999999988765 567777665543
No 205
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=31.00 E-value=94 Score=32.72 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHcCCc---EEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 168 DTSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~---~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
..+++.+.+.+++.+ .++.|||-=....|..++-. ..+| +++|.||-|
T Consensus 84 ~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT 134 (369)
T cd08198 84 LVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC
Confidence 367899999999998 99999998888877766543 2344 679999999
No 206
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=30.87 E-value=85 Score=34.99 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=25.9
Q ss_pred CeeEeeecccccCchhHHHHHHHHHHHhhhcCCcEEEEEec----CCcchhHHHHh
Q 012698 209 KVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVVKLM----GRYCGFIAMYA 260 (458)
Q Consensus 209 ~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~rv~iVEvM----GR~~G~lA~~a 260 (458)
.+||||||-...+ ..-+|++..... ++.++- |=|| |.+++++|+..
T Consensus 488 ~~pvi~vp~~~~~----~~g~~~l~s~~~-~p~g~p-v~~v~i~~~~~aa~~a~~i 537 (577)
T PLN02948 488 PLPVIGVPVKTSH----LDGLDSLLSIVQ-MPRGVP-VATVAIGNATNAGLLAVRM 537 (577)
T ss_pred CCCEEEcCCCCCC----CCcHHHHHHHhc-CCCCCe-EEEEecCChHHHHHHHHHH
Confidence 5789999985431 112344444443 455654 5555 66777777554
No 207
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.36 E-value=4.9e+02 Score=24.88 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC-----------chh--HHHHHHHHHH
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN-----------DIP--AQRAINAAHV 234 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN-----------Di~--a~~ai~~i~~ 234 (458)
...+.++.+..+++|++++...+... ...+.+.+.+.++ |||.+=..+++ |-. ...+.+.+..
T Consensus 43 ~~~~~i~~~~~~~vdgiii~~~~~~~--~~~~i~~~~~~~i--PvV~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~ 118 (272)
T cd06313 43 KQVAAIENMASQGWDFIAVDPLGIGT--LTEAVQKAIARGI--PVIDMGTLIAPLQINVHSFLAPDNYFMGASVAQALCN 118 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCChHH--hHHHHHHHHHCCC--cEEEeCCCCCCCCCceEEEECCCcHHHHHHHHHHHHH
Confidence 34567788889999999998654221 1222344444554 55554222211 111 2233333332
Q ss_pred HhhhcCCcEEEEEe-------cCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhC
Q 012698 235 EAESIENGIGVVKL-------MGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 296 (458)
Q Consensus 235 ~A~s~~~rv~iVEv-------MGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~ 296 (458)
.... ++++.++.- .-|..||........ +..++-+.+..++.+ .-.+.+++.++++
T Consensus 119 ~~~g-~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 181 (272)
T cd06313 119 AMGG-KGKIAMLQGALGHTGAQGRAQGFNDVIKKYP--DIEVVDEQPANWDVS---KAARIWETWLTKY 181 (272)
T ss_pred HcCC-CceEEEEECCCCCcchhHHHHHHHHHHHhCC--CCEEEeccCCCCCHH---HHHHHHHHHHHhC
Confidence 2223 356777741 236777777665321 233332333344443 3445555555543
No 208
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.22 E-value=4.8e+02 Score=24.72 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=50.4
Q ss_pred EEEEEccCC-CCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCC-CcchHH
Q 012698 93 HACIVTCGG-LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR-GGHDTS 170 (458)
Q Consensus 93 ~iaIltsGG-~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR-~~~~~~ 170 (458)
|||++.-.- .-|-.+..+.++-+.+.. ++ .++. +..+.. ......
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g-~~v~-------------------------------~~~~~~~~~~~~~ 47 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LG-VDVE-------------------------------YRGPETFDVADMA 47 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hC-CEEE-------------------------------EECCCCCCHHHHH
Confidence 577777654 567888888888877753 33 2332 111222 122345
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
..++.|...++|++++.+.+..... ..+ +.+.+++ +|+|.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~~-~~l-~~~~~~~--ipvV~~ 88 (271)
T cd06312 48 RLIEAAIAAKPDGIVVTIPDPDALD-PAI-KRAVAAG--IPVISF 88 (271)
T ss_pred HHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHCC--CeEEEe
Confidence 6777888899999999987643211 122 3344445 456655
No 209
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=30.04 E-value=3.5e+02 Score=26.49 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhc-hhhcCccccccCCCc---chHHHHHHHHHHcC
Q 012698 105 GLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVND-IHKRGGTILGTSRGG---HDTSKIVDSIQDRG 180 (458)
Q Consensus 105 GmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~-~~~~GGs~LGtsR~~---~~~~~i~~~l~~~~ 180 (458)
.-....+.++..+.+.++..+|.-+.... .+-.-..+.+.. +...|.++.++...+ .++...+..+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~~------~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~ 190 (334)
T cd06342 117 RDDQQGPAAAKYAVETLKAKKVAIIDDKT------AYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAAN 190 (334)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEeCCc------chhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcC
Confidence 33455666666554444555555443221 111111122323 334577777765543 47888899999999
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 181 INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 181 I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
.+.+++.|. +. .+..+.+.+++.|++.++++..
T Consensus 191 ~~~vi~~~~-~~--~~~~~~~~~~~~g~~~~~~~~~ 223 (334)
T cd06342 191 PDAVFFGGY-YP--EAGPLVRQMRQLGLKAPFMGGD 223 (334)
T ss_pred CCEEEEcCc-ch--hHHHHHHHHHHcCCCCcEEecC
Confidence 998877653 32 2344667777788887777654
No 210
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=29.92 E-value=5.7e+02 Score=25.44 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=40.5
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
...||++...-.-|=...++.++-..+.+ ++ ..++ +.++ ........
T Consensus 59 ~~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g-~~~~-~~~~------------------------------~~~~~~~~ 105 (343)
T PRK10727 59 TETVGLVVGDVSDPFFGAMVKAVEQVAYH-TG-NFLL-IGNG------------------------------YHNEQKER 105 (343)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHHHH-cC-CEEE-EEeC------------------------------CCCHHHHH
Confidence 35799988654556677777887777653 23 2222 0000 00112234
Q ss_pred HHHHHHHHcCCcEEEEEcCCC
Q 012698 171 KIVDSIQDRGINQVYIIGGDG 191 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdg 191 (458)
+.++.|...++|++++.+.+-
T Consensus 106 ~~i~~l~~~~vdgiIi~~~~~ 126 (343)
T PRK10727 106 QAIEQLIRHRCAALVVHAKMI 126 (343)
T ss_pred HHHHHHHhcCCCEEEEecCCC
Confidence 567778889999999997643
No 211
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=29.71 E-value=4.7e+02 Score=26.76 Aligned_cols=102 Identities=13% Similarity=0.238 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchH-HHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcCCcEEEEE
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQK-GAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVVK 247 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~-~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~rv~iVE 247 (458)
.+++.+.+++++.+-+++|.|..+.. ...++.+.+++.++...+...+.- +.-+..+.++.+...+.. +.=+||=
T Consensus 11 l~~l~~~~~~~~~~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~--~~~pt~~~v~~~~~~~~~--~~d~IIa 86 (348)
T cd08175 11 LERLPEILKEFGYKKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAG--DLIADEKAVGRVLKELER--DTDLIIA 86 (348)
T ss_pred HHHHHHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCC--cccCCHHHHHHHHHHhhc--cCCEEEE
Confidence 45666677777766666666655544 245566677666665433322211 112322333333333322 2346888
Q ss_pred ecCCcchhHHHHhhcccCCCceEecCCC
Q 012698 248 LMGRYCGFIAMYATLGSRDVDCCLIPES 275 (458)
Q Consensus 248 vMGR~~G~lA~~aaLA~~~ad~ilIPE~ 275 (458)
+=|+++...|-..+... +..++.||-.
T Consensus 87 IGGGs~~D~aK~vA~~~-~~p~i~IPTT 113 (348)
T cd08175 87 VGSGTINDITKYVSYKT-GIPYISVPTA 113 (348)
T ss_pred ECCcHHHHHHHHHHHhc-CCCEEEecCc
Confidence 88888888887666555 5778888865
No 212
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.69 E-value=4.3e+02 Score=23.96 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHcCCcEEEEE-cCCCch
Q 012698 168 DTSKIVDSIQDRGINQVYII-GGDGTQ 193 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvI-GGdgs~ 193 (458)
...++-+.+.+.+-|.+++. |+|+..
T Consensus 47 ~~~~~~~~l~~~~pd~vii~~G~ND~~ 73 (200)
T cd01829 47 WPEKLKELIAEEKPDVVVVFLGANDRQ 73 (200)
T ss_pred HHHHHHHHHhcCCCCEEEEEecCCCCc
Confidence 34556666777888887765 888754
No 213
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=29.26 E-value=97 Score=29.29 Aligned_cols=89 Identities=15% Similarity=0.318 Sum_probs=54.3
Q ss_pred hcCccccccCCCc-chHHHHHHHHHHc-CCcEEEEEcCCCc-hHHHHHHHHHHHHcCC--CeeEeeecccccCchhHHHH
Q 012698 154 KRGGTILGTSRGG-HDTSKIVDSIQDR-GINQVYIIGGDGT-QKGAAVIYEEIRQRGL--KVAVAGIPKTIDNDIPAQRA 228 (458)
Q Consensus 154 ~~GGs~LGtsR~~-~~~~~i~~~l~~~-~I~~LvvIGGdgs-~~~a~~L~~~~~~~~~--~i~vvgIPkTIDNDi~a~~a 228 (458)
..|-.+.||+.+. ..+++++.++-.+ ||..|++.|-+-. +.+.+.|. .+.+.|+ .-.+||-+.-| -+
T Consensus 39 ~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~-aLh~NGid~~grIiGa~Gai-------Pf 110 (176)
T PF04208_consen 39 DAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLL-ALHENGIDEDGRIIGAKGAI-------PF 110 (176)
T ss_pred hcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHH-HHHHcCCCCCCCCccCCCCc-------ch
Confidence 3456899999984 5799998888554 9999999998763 44445443 3445665 22345544432 23
Q ss_pred HHHHHHHhhh-cCCcEEEEEecC
Q 012698 229 INAAHVEAES-IENGIGVVKLMG 250 (458)
Q Consensus 229 i~~i~~~A~s-~~~rv~iVEvMG 250 (458)
|+++-.+|.. .+++|-+|..+|
T Consensus 111 leNi~~~aV~rFq~qVelVd~ig 133 (176)
T PF04208_consen 111 LENIPREAVERFQQQVELVDMIG 133 (176)
T ss_pred hhcCCHHHHHHHHHheEEEeeec
Confidence 3333333322 235677777665
No 214
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.18 E-value=3.5e+02 Score=26.83 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
..++.++.+++.+++++++- |..+.....+.+.++++|+..-.+.-|.|
T Consensus 103 G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 35788999999999999998 77888888899999999998766777888
No 215
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=28.88 E-value=2e+02 Score=26.99 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=46.4
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
.++..+ || .|+ ++..+.+.+.+.|++.++.|. +||-. . +-....++.|...+-.+|-..-+.+..|.
T Consensus 49 ~~vfll--G~-~~~---v~~~~~~~l~~~yP~l~i~g~-~g~f~---~---~~~~~i~~~I~~s~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 49 LPIFLY--GG-KPD---VLQQLKVKLIKEYPKLKIVGA-FGPLE---P---EERKAALAKIARSGAGIVFVGLGCPKQEI 115 (177)
T ss_pred CeEEEE--CC-CHH---HHHHHHHHHHHHCCCCEEEEE-CCCCC---h---HHHHHHHHHHHHcCCCEEEEEcCCcHhHH
Confidence 466666 44 444 444445555566899999987 66642 1 11123456666666666544444344445
Q ss_pred HHHHH-HHcCCcEEEEEcC
Q 012698 172 IVDSI-QDRGINQVYIIGG 189 (458)
Q Consensus 172 i~~~l-~~~~I~~LvvIGG 189 (458)
.+... ..++...++-+||
T Consensus 116 ~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 116 WMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred HHHHhHHhCCCcEEEEece
Confidence 44444 3444555555666
No 216
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.83 E-value=4.2e+02 Score=26.56 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=42.7
Q ss_pred hhhcCccccccCCC---cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEee
Q 012698 152 IHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (458)
Q Consensus 152 ~~~~GGs~LGtsR~---~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (458)
+...|+++..+.+. ..|+...+..+++.+-|.+++.+... .+..+.+.+++.|+++++++
T Consensus 162 ~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 162 LAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGP---EGAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecCh---HHHHHHHHHHHcCCCCcEec
Confidence 44567777766554 35788899999999999999987433 23345667777888877665
No 217
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=28.76 E-value=2.1e+02 Score=21.66 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
..+++++..++.|++++.+-== +++.+...+.+.+++++++ .++|+-.++
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh-~~~~~~~~~~~~~~~~gi~-~i~G~E~~~ 65 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDH-GNLFGAVEFYKAAKKAGIK-PIIGLEANI 65 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeC-CcccCHHHHHHHHHHcCCe-EEEEEEEEe
Confidence 4788999999999999876544 4788888888888888875 477776554
No 218
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=28.59 E-value=30 Score=35.84 Aligned_cols=68 Identities=25% Similarity=0.326 Sum_probs=38.7
Q ss_pred ccCChhHHhchhhcCccccccCCCc-----chHHHHHHHHHHcCC-----------------cEEEEEcCCCchHHHHH-
Q 012698 142 INLTPKVVNDIHKRGGTILGTSRGG-----HDTSKIVDSIQDRGI-----------------NQVYIIGGDGTQKGAAV- 198 (458)
Q Consensus 142 ~~L~~~~v~~~~~~GGs~LGtsR~~-----~~~~~i~~~l~~~~I-----------------~~LvvIGGdgs~~~a~~- 198 (458)
-.|+++.+..+...-||-.|-==.. .....+++.|.+-+| |++|-.||||||--|.-
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aasr 124 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDVGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAASR 124 (395)
T ss_pred cCCCHHHHHHHHHhcCchHHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhhh
Confidence 3466666666555554432211000 123455555555554 78999999999876543
Q ss_pred HHHHHHHcCCCeeEeee
Q 012698 199 IYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 199 L~~~~~~~~~~i~vvgI 215 (458)
+.+ -..|||||
T Consensus 125 v~~------~~~PViGv 135 (395)
T KOG4180|consen 125 VID------DSKPVIGV 135 (395)
T ss_pred hhc------cCCceeee
Confidence 443 24678887
No 219
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.49 E-value=1.1e+02 Score=30.50 Aligned_cols=51 Identities=24% Similarity=0.447 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCch----------HHHHHHHHHHHHc--CCCeeEeeecc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQ----------KGAAVIYEEIRQR--GLKVAVAGIPK 217 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~----------~~a~~L~~~~~~~--~~~i~vvgIPk 217 (458)
..++..+..+...||+.+++++||-.- ..|..|.+.+++. .+.|-+.+.|-
T Consensus 73 ~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 73 EEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 457778888999999999999999762 2355555555443 34555555554
No 220
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.19 E-value=1.1e+02 Score=31.10 Aligned_cols=40 Identities=8% Similarity=0.227 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCC
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (458)
+++..+..|. ...|.+|||||..|-.+ .+|++-+++.+.+
T Consensus 198 ~RQ~a~~~La-~~vD~miVVGg~~SsNT-~rL~eia~~~~~~ 237 (281)
T PRK12360 198 KRQESAKELS-KEVDVMIVIGGKHSSNT-QKLVKICEKNCPN 237 (281)
T ss_pred hHHHHHHHHH-HhCCEEEEecCCCCccH-HHHHHHHHHHCCC
Confidence 5677778884 46999999999999875 5577877776644
No 221
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=28.08 E-value=4.5e+02 Score=25.20 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=25.3
Q ss_pred hcCccccccCCCcchHHHHHHHHHH--cCCcEEEEEcCCCch
Q 012698 154 KRGGTILGTSRGGHDTSKIVDSIQD--RGINQVYIIGGDGTQ 193 (458)
Q Consensus 154 ~~GGs~LGtsR~~~~~~~i~~~l~~--~~I~~LvvIGGdgs~ 193 (458)
..|||.|.+. +.++++++.+.+ .+.+-++|.+|-+..
T Consensus 5 K~GGs~l~~~---~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~ 43 (227)
T cd04234 5 KFGGTSVASA---ERIKRVADIIKAYEKGNRVVVVVSAMGGV 43 (227)
T ss_pred EECccccCCH---HHHHHHHHHHHHhhcCCCEEEEEcCCCcc
Confidence 4688888654 345555555555 689999999776553
No 222
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=27.86 E-value=1.1e+02 Score=29.05 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=37.9
Q ss_pred EEecCCcchhHHHHhhcccCCCceEecCCCCCCccc--hhhHHHHHHHHHHhCCcEEEEEeCC
Q 012698 246 VKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG--EGGLYEFIEKRLKENGHMVIVIAEG 306 (458)
Q Consensus 246 VEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~--~~~~~~~i~~r~~~~~~~vVvVaEG 306 (458)
-++-|+..=-+++..+|+. .|+++++=|---.+|. .+.+.+.|++..++.+..||+++--
T Consensus 136 ~~LS~G~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 136 AELSGGEKQRISLIRNLQF-MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3555555566788999999 8999998665444543 3345555554434446677776633
No 223
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=27.80 E-value=3.7e+02 Score=27.57 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=44.6
Q ss_pred hchhhcCccccccCCC---cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 150 NDIHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 150 ~~~~~~GGs~LGtsR~---~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
+.+...|+.+.+..+. ..|+...+..++..+-|++++ +|++. . +..+.+.+++.|++.++++.
T Consensus 183 ~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~-~~~~~-~-~~~~~k~~~~~G~~~~~i~~ 248 (369)
T PRK15404 183 DGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYY-GGYHP-E-MGQILRQAREAGLKTQFMGP 248 (369)
T ss_pred HHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEE-CCCch-H-HHHHHHHHHHCCCCCeEEec
Confidence 4456778888777655 358889999999999998775 44443 2 23355667778988877755
No 224
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.60 E-value=5.3e+02 Score=24.32 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
...++++.+..+++|++|+.+.+..- .....+.+.+.+ +|+|.+
T Consensus 45 ~~~~~i~~l~~~~vdgvii~~~~~~~--~~~~l~~~~~~~--ipvV~~ 88 (273)
T cd06310 45 GQVNLLENAIARGPDAILLAPTDAKA--LVPPLKEAKDAG--IPVVLI 88 (273)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCChhh--hHHHHHHHHHCC--CCEEEe
Confidence 45567788888999999998765421 122223334445 456655
No 225
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=27.60 E-value=1.6e+02 Score=29.93 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCC
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (458)
.+++..+..|-+ .+|.+|||||--|-.+ .+|++-+++.+.+
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSsNT-~rL~ei~~~~~~~ 236 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSSNT-TRLYEIAEEHGPP 236 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCchH-HHHHHHHHHhCCC
Confidence 357777777765 5999999999999875 5677877766543
No 226
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=27.55 E-value=5.5e+02 Score=25.36 Aligned_cols=102 Identities=23% Similarity=0.315 Sum_probs=56.0
Q ss_pred cCCCchHHHHHHHHHHHHcCCCeeEee---------------ecccccCchh-----HHHHHHHHHHHhhhcCCcEEEEE
Q 012698 188 GGDGTQKGAAVIYEEIRQRGLKVAVAG---------------IPKTIDNDIP-----AQRAINAAHVEAESIENGIGVVK 247 (458)
Q Consensus 188 GGdgs~~~a~~L~~~~~~~~~~i~vvg---------------IPkTIDNDi~-----a~~ai~~i~~~A~s~~~rv~iVE 247 (458)
||-|-=+.+..|+.++.++|-++.+|= =|.+.++++. -.+-|+.+...|.....-+.||-
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvD 90 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVD 90 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEe
Confidence 677777777777777766654322210 0222222222 11234445444443222477999
Q ss_pred ecCCcchhHHHHhhcccCCCceEecCCCCCCccc--hhhHHHHHHHHH
Q 012698 248 LMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG--EGGLYEFIEKRL 293 (458)
Q Consensus 248 vMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~--~~~~~~~i~~r~ 293 (458)
+-|..+=+-+...+ .+|+||||=.+=.+|- --+-++++++..
T Consensus 91 leG~as~~~~~aia----~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~ 134 (231)
T PF07015_consen 91 LEGGASELNDYAIA----RSDLVLIPMQPSQLDADEAAKTFKWVRRLE 134 (231)
T ss_pred CCCCCchhHHHHHH----HCCEEEECCCCChHHHHHHHHHHHHHHHHH
Confidence 99988776554443 4899999998765542 222344454433
No 227
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=27.44 E-value=2.1e+02 Score=29.22 Aligned_cols=115 Identities=10% Similarity=-0.058 Sum_probs=61.6
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCCh----------hHHhchhhcCccc
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTP----------KVVNDIHKRGGTI 159 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~----------~~v~~~~~~GGs~ 159 (458)
+.+||.|++++- =-|=+.+.+++.+.+.+ .+++++-+.+.+..... .+..+.. ..+-++...++..
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~--~g~~~~~~~d~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 78 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQ--KGIKDVIVCDLFGESHP-VITEITKYLYLKSYTIGKELYRLFYYGVEK 78 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHh--cCCCcEEEEEhHHhcch-HHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 456999999765 33788899999888864 33455556666653311 0101000 1111222222222
Q ss_pred cccCCCc-----chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEee
Q 012698 160 LGTSRGG-----HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (458)
Q Consensus 160 LGtsR~~-----~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (458)
+...+.. ....++.+.+++++.|.++.-++.-++ .. ..+..+.++|++.
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~---~~---~~~~~~~~ip~~~ 132 (380)
T PRK13609 79 IYDKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAV---PE---LKKQTGISIPTYN 132 (380)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHH---HH---HHHhcCCCCCeEE
Confidence 2111110 124678899999999988875544322 21 2233566777763
No 228
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.36 E-value=5.2e+02 Score=24.19 Aligned_cols=41 Identities=10% Similarity=0.218 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
.+.+.+.+.+.++|++++...+..- .+.+.+.++++ |+|.+
T Consensus 49 ~~~~~~~~~~~~~dgiii~~~~~~~----~~~~~~~~~~i--pvV~~ 89 (270)
T cd06294 49 LEEVKKMIQQKRVDGFILLYSREDD----PIIDYLKEEKF--PFVVI 89 (270)
T ss_pred HHHHHHHHHHcCcCEEEEecCcCCc----HHHHHHHhcCC--CEEEE
Confidence 3445555677789999998754431 12334444554 55555
No 229
>PLN02591 tryptophan synthase
Probab=27.04 E-value=3.8e+02 Score=26.64 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee-ccc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI-PKT 218 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI-PkT 218 (458)
..++.++.+++.++|+|++. |=.+.-+..+.+.++++|+.. |..| |.|
T Consensus 94 G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~-I~lv~Ptt 142 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIEL-VLLTTPTT 142 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeE-EEEeCCCC
Confidence 47889999999999999999 677888889999999999974 5556 665
No 230
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=26.90 E-value=4.9e+02 Score=25.88 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCC
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGL 208 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~ 208 (458)
..+.+.+.++++++|+++. +-++.......+.+.+.+.|.
T Consensus 57 ~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g~ 96 (326)
T PRK12767 57 YIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIGV 96 (326)
T ss_pred HHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcCc
Confidence 4678888999999997665 444444444455555555553
No 231
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=26.69 E-value=1.2e+02 Score=28.82 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=33.1
Q ss_pred cchhHHHHhhcccCCCceEecCCCCCCccc--hhhHHHHHHHHHHhCCcEEEEEeC
Q 012698 252 YCGFIAMYATLGSRDVDCCLIPESPFYLEG--EGGLYEFIEKRLKENGHMVIVIAE 305 (458)
Q Consensus 252 ~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~--~~~~~~~i~~r~~~~~~~vVvVaE 305 (458)
.-=-+++..+|+. .++++++=|---.+|. .+.+.+.|++..++++..||+++-
T Consensus 150 ~~qrl~la~al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH 204 (233)
T PRK11629 150 ERQRVAIARALVN-NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTH 204 (233)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3334678888988 8999998775444543 344556555433334667776654
No 232
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=26.63 E-value=4.7e+02 Score=26.89 Aligned_cols=147 Identities=22% Similarity=0.303 Sum_probs=67.7
Q ss_pred CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-c
Q 012698 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-H 167 (458)
Q Consensus 89 ~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-~ 167 (458)
++-+=+||-..||.-| ...+..+..+.+ .+ ..|+ +|+.=++.++ .++......-|.-|-=-|.+ .
T Consensus 33 ~~~liiGiA~~GG~lp---~~w~~~i~~Ai~-~G-l~Iv---sGLH~~L~dd------pel~~~A~~~g~~i~DvR~p~~ 98 (301)
T PF07755_consen 33 ADTLIIGIAPAGGRLP---PSWRPVILEAIE-AG-LDIV---SGLHDFLSDD------PELAAAAKKNGVRIIDVRKPPK 98 (301)
T ss_dssp -SEEEE---STTHCCH---CCHHHHHHHHHH-TT--EEE---E-SSS-HCCH------HHHHCCHHCCT--EEETTS--S
T ss_pred CCEEEEecCcCCCcCC---HHHHHHHHHHHH-cC-CCEE---ecChhhhccC------HHHHHHHHHcCCeEeeccCCCc
Confidence 4557799999999887 345555554443 34 3443 2222223221 12222333333222222222 1
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCc---hHHHHHHHHHHHHcCCCeeEeee-------------cccccCchhHHHHHHH
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGT---QKGAAVIYEEIRQRGLKVAVAGI-------------PKTIDNDIPAQRAINA 231 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs---~~~a~~L~~~~~~~~~~i~vvgI-------------PkTIDNDi~a~~ai~~ 231 (458)
+..-.--..++.+-.-+.++|=|-+ |+++..|.++++++|++..+++= +-.+-+|. +.-+++.
T Consensus 99 ~~~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~iDav~~DF-vaGavE~ 177 (301)
T PF07755_consen 99 DLPVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVPIDAVPSDF-VAGAVEA 177 (301)
T ss_dssp S-----SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC--GGGSBGGG-HHHHHHH
T ss_pred ccccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCeeccchhhhh-HHHHHHH
Confidence 2211111122346666777777644 78888888888888877666542 12222222 4456666
Q ss_pred HHHHhhhcCCcEEEEEecCC
Q 012698 232 AHVEAESIENGIGVVKLMGR 251 (458)
Q Consensus 232 i~~~A~s~~~rv~iVEvMGR 251 (458)
+..++.. .+.|-|||-+|.
T Consensus 178 ~v~~~~~-~~d~ivVEGQgs 196 (301)
T PF07755_consen 178 LVPEAAE-EHDWIVVEGQGS 196 (301)
T ss_dssp HHHHHCC-C-SEEEEE--S-
T ss_pred HHHhhCc-CCCEEEEecccc
Confidence 6666664 347999999995
No 233
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=26.31 E-value=7.5e+02 Score=25.69 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHH-HHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhh--cCCcEEE
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKG-AAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAES--IENGIGV 245 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~-a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s--~~~rv~i 245 (458)
++++.+.+++++.+-++++.+...... ...+.+.+++.++.+.++.+|.--.|- ..+.++.+...+.. ..+.-+|
T Consensus 11 l~~l~~~l~~~g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k--~~~~v~~~~~~~~~~~~dr~~~I 88 (355)
T cd08197 11 LDSVLGYLPELNADKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHK--TLSTLSDLVERALALGATRRSVI 88 (355)
T ss_pred HHHHHHHHHhcCCCeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCC--CHHHHHHHHHHHHHcCCCCCcEE
Confidence 455666677777666666666554443 234666666667766555555332221 11222222222221 1234578
Q ss_pred EEecCCcchhHHHHhh-cccCCCceEecCCC
Q 012698 246 VKLMGRYCGFIAMYAT-LGSRDVDCCLIPES 275 (458)
Q Consensus 246 VEvMGR~~G~lA~~aa-LA~~~ad~ilIPE~ 275 (458)
|=+=|+..+.+|-.+| +...+..++.||--
T Consensus 89 IAvGGGsv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 89 VALGGGVVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred EEECCcHHHHHHHHHHHHhccCCCEEEecCc
Confidence 8888999888885544 32236788888874
No 234
>PRK04155 chaperone protein HchA; Provisional
Probab=26.25 E-value=7e+02 Score=25.29 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=19.7
Q ss_pred HHHHHHHHH--HcCCcEEEEEcCCCchHH
Q 012698 169 TSKIVDSIQ--DRGINQVYIIGGDGTQKG 195 (458)
Q Consensus 169 ~~~i~~~l~--~~~I~~LvvIGGdgs~~~ 195 (458)
.+.+.+... ....|++|+-||-|++..
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~d 162 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIG 162 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHH
Confidence 455555444 468899999999988654
No 235
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.24 E-value=1.2e+02 Score=28.24 Aligned_cols=57 Identities=21% Similarity=0.206 Sum_probs=35.7
Q ss_pred EEecCCcchhHHHHhhcccCC--CceEecCCCC--CCccchhhHHHHHHHHHHhCCcEEEEEe
Q 012698 246 VKLMGRYCGFIAMYATLGSRD--VDCCLIPESP--FYLEGEGGLYEFIEKRLKENGHMVIVIA 304 (458)
Q Consensus 246 VEvMGR~~G~lA~~aaLA~~~--ad~ilIPE~~--~~l~~~~~~~~~i~~r~~~~~~~vVvVa 304 (458)
-++.|...=-+++..+|+. . ++++++=|-- +|.+..+.+.+.|++. .+.+.+||+++
T Consensus 86 ~~LSgGq~qrl~laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tvIivS 146 (176)
T cd03238 86 STLSGGELQRVKLASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIE 146 (176)
T ss_pred CcCCHHHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEe
Confidence 4555555666788888988 8 9999985554 3443334556656543 33466666554
No 236
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.14 E-value=5.5e+02 Score=24.06 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=40.8
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchHHHH
Q 012698 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTSKI 172 (458)
Q Consensus 94 iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~~~i 172 (458)
|||+...=.-|=.+.++.++.+.+.+ ++ .+++ ++++.. .....++
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~-~g-y~~~--------------------------------~~~~~~~~~~~~~~ 47 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNG-SG-YSPI--------------------------------IATGHWNQSRELEA 47 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCHHHHHHH
Confidence 66666554556677777777776653 33 2332 111111 1234577
Q ss_pred HHHHHHcCCcEEEEEcCCCc
Q 012698 173 VDSIQDRGINQVYIIGGDGT 192 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs 192 (458)
++.+..+++|++++.+.+-+
T Consensus 48 i~~l~~~~~dgiii~~~~~~ 67 (265)
T cd06290 48 LELLKSRRVDALILLGGDLP 67 (265)
T ss_pred HHHHHHCCCCEEEEeCCCCC
Confidence 88899999999999987643
No 237
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=26.00 E-value=48 Score=31.93 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHH
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAA 197 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~ 197 (458)
...++.|+++||| |++||+.|+.-|.
T Consensus 9 p~~~~vf~~~gid--~cc~g~~~l~~a~ 34 (216)
T TIGR03652 9 PRAARIFRKYGID--FCCGGNVSLAEAC 34 (216)
T ss_pred ccHHHHHHHcCCC--ccCCCcchHHHHH
Confidence 3567889999999 9999977766443
No 238
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=25.74 E-value=1.3e+02 Score=28.63 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=38.5
Q ss_pred EecCCcchhHHHHhhcccCCCceEecCCCCCCccc--hhhHHHHHHHHHHhCCcEEEEEeC
Q 012698 247 KLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG--EGGLYEFIEKRLKENGHMVIVIAE 305 (458)
Q Consensus 247 EvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~--~~~~~~~i~~r~~~~~~~vVvVaE 305 (458)
++-|+..=-+++..+|+. .++++++=|-.-.+|. .+.+.+.|++..++.+.++|+++-
T Consensus 129 ~LS~G~~qrv~laral~~-~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH 188 (232)
T PRK10771 129 QLSGGQRQRVALARCLVR-EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188 (232)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 566666667889999999 8999998665444543 344666666544444667776653
No 239
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.37 E-value=6.1e+02 Score=24.35 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=16.3
Q ss_pred cCCC--CcchhHHHHHHHHHHHH
Q 012698 99 CGGL--CPGLNTVIREIVCGLYH 119 (458)
Q Consensus 99 sGG~--apGmNavIr~~v~~~~~ 119 (458)
.||| -|-.+.+++++.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~ 35 (269)
T cd06287 13 AGGPSRLGFMMEVAAAAAESALE 35 (269)
T ss_pred cCCcccCccHHHHHHHHHHHHHH
Confidence 4666 47888899999888864
No 240
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=25.29 E-value=4.4e+02 Score=25.89 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=59.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcC-CCeeEeeecccccCchh---HHHHH-HHHHHHhhhcCCcEEEEEecCCcch
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVAVAGIPKTIDNDIP---AQRAI-NAAHVEAESIENGIGVVKLMGRYCG 254 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~-~~i~vvgIPkTIDNDi~---a~~ai-~~i~~~A~s~~~rv~iVEvMGR~~G 254 (458)
+-..|+++||-+.- .+.+.+++.. ..+-++|.+. .+.+-. ..... ........++ .+.| -++|
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~~~~~~~v~g~~~-~~~~~~ni~~~~~~~~~~~~~m~~a--d~vI-----s~~G 259 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKALPDYQFIVFGPNA-ADPRPGNIHVRPFSTPDFAELMAAA--DLVI-----SKGG 259 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhCCCCeEEEEcCCc-ccccCCCEEEeecChHHHHHHHHhC--CEEE-----ECCC
Confidence 44578888888766 3444444443 4555555553 222221 11100 1111111221 1323 2578
Q ss_pred hHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCC
Q 012698 255 FIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAG 308 (458)
Q Consensus 255 ~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vVvVaEGa~ 308 (458)
|-+++=+++. +.-.++||...++.+ ...-+++++.|.++++-.|...
T Consensus 260 ~~t~~Ea~~~-g~P~l~ip~~~~~EQ------~~~a~~l~~~G~~~~~~~~~~~ 306 (318)
T PF13528_consen 260 YTTISEALAL-GKPALVIPRPGQDEQ------EYNARKLEELGLGIVLSQEDLT 306 (318)
T ss_pred HHHHHHHHHc-CCCEEEEeCCCCchH------HHHHHHHHHCCCeEEcccccCC
Confidence 8888888887 677899998764432 2234566777888877556654
No 241
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=25.22 E-value=89 Score=29.25 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 174 ~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
+.+++.+.|++|+-||-|+-.......+.++...-++|+.||
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI 78 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV 78 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE
Confidence 345667899999999999876543322222222234566665
No 242
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=25.09 E-value=73 Score=22.87 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHH
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKG 195 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~ 195 (458)
....++++.|++++++.+.|+..+|.+.|
T Consensus 16 ~~l~~~~~~~~~~~~~~~~V~d~~~~~~G 44 (57)
T PF00571_consen 16 DSLEEALEIMRKNGISRLPVVDEDGKLVG 44 (57)
T ss_dssp SBHHHHHHHHHHHTSSEEEEESTTSBEEE
T ss_pred CcHHHHHHHHHHcCCcEEEEEecCCEEEE
Confidence 35889999999999999999998888765
No 243
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=24.94 E-value=6.7e+02 Score=24.68 Aligned_cols=66 Identities=9% Similarity=-0.021 Sum_probs=40.6
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
..||++...-.-|-...++.++-+.+.+ ++ .+++-.. +.........
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 110 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDA-HG-YQTMLAH-------------------------------YGYKPEMEQE 110 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHH-CC-CEEEEec-------------------------------CCCCHHHHHH
Confidence 4799988655567778888888877753 33 3333100 0011111235
Q ss_pred HHHHHHHcCCcEEEEEcCC
Q 012698 172 IVDSIQDRGINQVYIIGGD 190 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGd 190 (458)
.++.+...++|++++.+-+
T Consensus 111 ~~~~~~~~~vdgiI~~~~~ 129 (331)
T PRK14987 111 RLESMLSWNIDGLILTERT 129 (331)
T ss_pred HHHHHHhcCCCEEEEcCCC
Confidence 5677888999999998644
No 244
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=24.80 E-value=5.8e+02 Score=23.88 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
.....++.|...++|++++++.+.+-.. .+.+.+.+ +|+|.+
T Consensus 43 ~~~~~~~~l~~~~vdgiii~~~~~~~~~----~~~l~~~~--iPvv~~ 84 (268)
T cd06273 43 REYAQARKLLERGVDGLALIGLDHSPAL----LDLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE
Confidence 3456777788889999999987644322 22334444 556654
No 245
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=24.75 E-value=5.8e+02 Score=23.82 Aligned_cols=63 Identities=27% Similarity=0.490 Sum_probs=40.4
Q ss_pred hhcCccccccCCC---cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 153 HKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 153 ~~~GGs~LGtsR~---~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
...|..+.+.... ..+....+..+++.+.+.+++.+..+ .+..+.+.+.+.++++++++...+
T Consensus 160 ~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~ 225 (298)
T cd06268 160 KKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGG---DAALFLKQAREAGLKVPIVGGDGA 225 (298)
T ss_pred HHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEecCcc
Confidence 3455555444332 24677788888888889888876543 234455666677888888876655
No 246
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=24.41 E-value=1.4e+02 Score=27.45 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=22.9
Q ss_pred HHHcCCcEEEEEcCCCchHH---HHHHHHHHHHcCCCeeEeee
Q 012698 176 IQDRGINQVYIIGGDGTQKG---AAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 176 l~~~~I~~LvvIGGdgs~~~---a~~L~~~~~~~~~~i~vvgI 215 (458)
+...++|++++-||.++... ..++.+++.++ ++||.||
T Consensus 35 ~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~--~~PvlGI 75 (178)
T cd01744 35 ILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGK--KIPIFGI 75 (178)
T ss_pred HhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhC--CCCEEEE
Confidence 34568999999999876433 23333443333 3566665
No 247
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=24.33 E-value=5.3e+02 Score=25.31 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=59.3
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCc-ccCChhHHhchhhcCccccccCCCc---chHHHHHHHHHHc
Q 012698 104 PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSRGG---HDTSKIVDSIQDR 179 (458)
Q Consensus 104 pGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGtsR~~---~~~~~i~~~l~~~ 179 (458)
|.-....+.+++.+.+ .+..++.-+.. +..+ ...-..-.+.+...|+++......+ .++...+..+++.
T Consensus 118 ~~~~~~~~~~~~~l~~-~g~~~v~~l~~------~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~ 190 (336)
T cd06326 118 ASYADEIAAIVRHLVT-LGLKRIAVFYQ------DDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAA 190 (336)
T ss_pred CChHHHHHHHHHHHHH-hCCceEEEEEe------cCcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhc
Confidence 4445566777777654 34445543321 1111 1111112234456677665554432 4677788888888
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
+.|++|+.+-.. .+..+.+.+++.|++++++++..+
T Consensus 191 ~~dav~~~~~~~---~a~~~i~~~~~~G~~~~~~~~~~~ 226 (336)
T cd06326 191 RPQAVIMVGAYK---AAAAFIRALRKAGGGAQFYNLSFV 226 (336)
T ss_pred CCCEEEEEcCcH---HHHHHHHHHHhcCCCCcEEEEecc
Confidence 899888876332 234455677778998888876544
No 248
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.24 E-value=3.4e+02 Score=32.68 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=58.0
Q ss_pred ceEEEEEccCCCCcc----hhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc
Q 012698 91 EVHACIVTCGGLCPG----LNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG 166 (458)
Q Consensus 91 ~~~iaIltsGG~apG----mNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~ 166 (458)
-+||.|+-+|+..-| ....-..+.+++.+ .|.+|+.+..--..... +....+... + .+
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e--~G~~vi~v~~np~~~~~------d~~~ad~~y------~----ep 68 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKE--EGYQVVLVNPNPATIMT------DPAPADTVY------F----EP 68 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHH--cCCEEEEEeCCcchhhc------CcccCCeeE------E----CC
Confidence 468999998865332 33334455556653 34688877532211110 000000000 0 02
Q ss_pred chHHHHHHHHHHcCCcEEEE-EcCCCchHHHHHHHH--HHHHcCCCeeEeee
Q 012698 167 HDTSKIVDSIQDRGINQVYI-IGGDGTQKGAAVIYE--EIRQRGLKVAVAGI 215 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~Lvv-IGGdgs~~~a~~L~~--~~~~~~~~i~vvgI 215 (458)
...+.+.+.++++++|+++. +||...+..+..|++ .++++| ++++|.
T Consensus 69 ~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~g--v~l~g~ 118 (1068)
T PRK12815 69 LTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYG--VELLGT 118 (1068)
T ss_pred CCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCC--CEEECC
Confidence 24567778889999999985 588877777776654 244445 345553
No 249
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=24.12 E-value=7.5e+02 Score=24.96 Aligned_cols=127 Identities=18% Similarity=0.293 Sum_probs=66.0
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCcc---ccccCCCc---
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT---ILGTSRGG--- 166 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs---~LGtsR~~--- 166 (458)
||.|+=.|| +.|+++..+.+.- ..+.+.+++.- +...|.....+.-...|-+ =+|+.+.+
T Consensus 2 ~i~viGvGg---~G~n~v~~l~~~~---~~~~~~~a~nt--------D~~~L~~~~~~~k~~ig~~~t~g~Gag~~~~~g 67 (304)
T cd02201 2 KIKVIGVGG---GGGNAVNRMIESG---LEGVEFIAANT--------DAQALAKSKAPNKIQLGKELTRGLGAGGDPEVG 67 (304)
T ss_pred eEEEEEeCC---cHHHHHHHHHHcC---CCCceEEEEEC--------CHHHHhcCCCCcEEEcCCCCCCCCCCCCCHHHH
Confidence 577777776 4456666654432 12235555444 2222332222222222221 14554432
Q ss_pred -----chHHHHHHHHHHcCCcEEEEE----cCCCchHHHHHHHHHHHHcCC-CeeEeeecccccCchh---HHHHHHHHH
Q 012698 167 -----HDTSKIVDSIQDRGINQVYII----GGDGTQKGAAVIYEEIRQRGL-KVAVAGIPKTIDNDIP---AQRAINAAH 233 (458)
Q Consensus 167 -----~~~~~i~~~l~~~~I~~LvvI----GGdgs~~~a~~L~~~~~~~~~-~i~vvgIPkTIDNDi~---a~~ai~~i~ 233 (458)
+..+++-+.++. -|.+|++ ||-||=. +..+++.+++++. .+.++..|..-+.-.. |...++.++
T Consensus 68 ~~~a~~~~~~I~~~l~~--~d~v~i~aglGGGTGSG~-ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~ 144 (304)
T cd02201 68 RKAAEESREEIKEALEG--ADMVFITAGMGGGTGTGA-APVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELR 144 (304)
T ss_pred HHHHHHHHHHHHHHHhC--CCEEEEeeccCCCcchhH-HHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHH
Confidence 235566666655 7788887 4566544 4446777766653 4556666776555443 666777766
Q ss_pred HHh
Q 012698 234 VEA 236 (458)
Q Consensus 234 ~~A 236 (458)
..+
T Consensus 145 ~~~ 147 (304)
T cd02201 145 KHV 147 (304)
T ss_pred HhC
Confidence 544
No 250
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=24.11 E-value=1.7e+02 Score=30.92 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=70.6
Q ss_pred cccCCC-cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHH------H
Q 012698 160 LGTSRG-GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINA------A 232 (458)
Q Consensus 160 LGtsR~-~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~------i 232 (458)
.|..+. ..+++.++..+++++|.-++=-||-.....+.++.+.+++.|+.++|..|-.-.+.+.- .+.+.. +
T Consensus 50 ~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~gDd~~~~v-~~~~~~g~~~~~l 128 (362)
T PF07287_consen 50 KGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYGDDLKDEV-KELLAEGETIRPL 128 (362)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEECccchHhH-HHHHhCCCCCccC
Confidence 444443 35789999999999999999888888888888888888889998888776543332221 111110 0
Q ss_pred HH---HhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCC
Q 012698 233 HV---EAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPES 275 (458)
Q Consensus 233 ~~---~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~ 275 (458)
.. ......+-+.++=-|| --...-||+. +||+|+..-.
T Consensus 129 ~~~~~l~~~~~~~~~a~aylG----a~pI~~AL~~-GADIVI~GR~ 169 (362)
T PF07287_consen 129 DTGPPLSEWDDRIVSANAYLG----AEPIVEALEA-GADIVITGRV 169 (362)
T ss_pred CCCCCcchhccccceEEEecC----hHHHHHHHHc-CCCEEEeCcc
Confidence 00 0000112345555555 3466778888 8999987764
No 251
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=24.05 E-value=6.2e+02 Score=23.92 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+++.+.+.+.++|++++.+.+..-. ..+++.+.+ ||||.+-.
T Consensus 54 ~~~~~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~--ipvV~~~~ 95 (275)
T cd06295 54 DWLARYLASGRADGVILIGQHDQDP----LPERLAETG--LPFVVWGR 95 (275)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEECC
Confidence 4566777789999999998765421 123444445 55666543
No 252
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.93 E-value=1.2e+02 Score=24.77 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=27.1
Q ss_pred CccccccCCCcchHHHHHHHHHHcCCcEEEEEcCCCchHH
Q 012698 156 GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 195 (458)
Q Consensus 156 GGs~LGtsR~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~ 195 (458)
++.+|=+. ... .+.+.+.|+++++..+++|||.++...
T Consensus 50 ~~PIll~~-~~l-~~~~~~~l~~~~~~~v~iiGg~~~is~ 87 (92)
T PF04122_consen 50 NAPILLVN-NSL-PSSVKAFLKSLNIKKVYIIGGEGAISD 87 (92)
T ss_pred CCeEEEEC-CCC-CHHHHHHHHHcCCCEEEEECCCCccCH
Confidence 33444455 222 267788889999999999999998653
No 253
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=23.93 E-value=5.3e+02 Score=24.39 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
...+.++.|...++|++++.+.+... .....+.+.++++ |||.+
T Consensus 43 ~~~~~i~~l~~~~vdgiIi~~~~~~~--~~~~i~~~~~~~i--PvV~~ 86 (273)
T cd06309 43 NQISAIRSFIAQGVDVIILAPVVETG--WDPVLKEAKAAGI--PVILV 86 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccc--chHHHHHHHHCCC--CEEEE
Confidence 34577788888999999998765431 1112233444554 45554
No 254
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.85 E-value=6e+02 Score=23.73 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCC
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDG 191 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdg 191 (458)
....++.+...++|++++.+-+.
T Consensus 45 ~~~~~~~l~~~~~dgiii~~~~~ 67 (269)
T cd06288 45 EAEAVEALLDHRVDGIIYATMYH 67 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecCCC
Confidence 44677889999999999998654
No 255
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.77 E-value=5e+02 Score=23.04 Aligned_cols=87 Identities=7% Similarity=0.007 Sum_probs=0.0
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC----
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG---- 165 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~---- 165 (458)
.+.||-+-+.|||.=-.=+-+-+..... .|.+|+ +.....-..+.++.....+..+++=|-.
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~----~GfeVi----------~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~ 66 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYAD----LGFDVD----------VGPLFQTPEEIARQAVEADVHVVGVSSLAGGH 66 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHh----CCcEEE----------ECCCCCCHHHHHHHHHHcCCCEEEEcCchhhh
Q ss_pred cchHHHHHHHHHHcCC-cEEEEEcCC
Q 012698 166 GHDTSKIVDSIQDRGI-NQVYIIGGD 190 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I-~~LvvIGGd 190 (458)
.+.+.++++.|++.+. +..+++||.
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~ 92 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGV 92 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCC
No 256
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=23.73 E-value=6e+02 Score=23.70 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=54.1
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-chHHHH
Q 012698 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTSKI 172 (458)
Q Consensus 94 iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-~~~~~i 172 (458)
|||+...-+-|-.+.++.++.+.+.+ .+ ..+. ++.+.... ....+.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~-~~-~~~~-------------------------------~~~~~~~~~~~~~~~ 48 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAARE-AG-YAVT-------------------------------LSMLAEADEEALRAA 48 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHH-CC-CeEE-------------------------------EEeCCCCchHHHHHH
Confidence 67888777777778888888777754 22 2332 11111111 345577
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh
Q 012698 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 173 ~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (458)
++.+.+.++|++++.+-+.... . +.+ +.+.+ +|+|.+=...+..++
T Consensus 49 ~~~l~~~~vdgiii~~~~~~~~-~--~~~-~~~~~--ipvv~~~~~~~~~~~ 94 (264)
T cd01574 49 VRRLLAQRVDGVIVNAPLDDAD-A--ALA-AAPAD--VPVVFVDGSPSPRVS 94 (264)
T ss_pred HHHHHhcCCCEEEEeCCCCChH-H--HHH-HHhcC--CCEEEEeccCCCCCC
Confidence 8888999999999988765543 2 222 22345 456655444444333
No 257
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=23.69 E-value=4.4e+02 Score=28.32 Aligned_cols=101 Identities=19% Similarity=0.302 Sum_probs=67.1
Q ss_pred EEEEccCCCCcchhH-HHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-----cc
Q 012698 94 ACIVTCGGLCPGLNT-VIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-----GH 167 (458)
Q Consensus 94 iaIltsGG~apGmNa-vIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-----~~ 167 (458)
..||.+=|.+.|-+. =||+++..+.+ .|.+++-+.+ +..||+-|-|.|. .+
T Consensus 126 P~vvilpGltg~S~~~YVr~lv~~a~~--~G~r~VVfN~---------------------RG~~g~~LtTpr~f~ag~t~ 182 (409)
T KOG1838|consen 126 PIVVILPGLTGGSHESYVRHLVHEAQR--KGYRVVVFNH---------------------RGLGGSKLTTPRLFTAGWTE 182 (409)
T ss_pred cEEEEecCCCCCChhHHHHHHHHHHHh--CCcEEEEECC---------------------CCCCCCccCCCceeecCCHH
Confidence 444444455555554 68999888764 3346653322 2346788888884 46
Q ss_pred hHHHHHHHHHHcCCcE-EEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 168 DTSKIVDSIQDRGINQ-VYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~-LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
|++++++.+++.-=++ |+.+| .--||+.|.+|+.+.|-+.++++ -.+|+|
T Consensus 183 Dl~~~v~~i~~~~P~a~l~avG---~S~Gg~iL~nYLGE~g~~~~l~~-a~~v~~ 233 (409)
T KOG1838|consen 183 DLREVVNHIKKRYPQAPLFAVG---FSMGGNILTNYLGEEGDNTPLIA-AVAVCN 233 (409)
T ss_pred HHHHHHHHHHHhCCCCceEEEE---ecchHHHHHHHhhhccCCCCcee-EEEEec
Confidence 9999999999887777 88776 23356778888887777765553 345555
No 258
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.62 E-value=2.1e+02 Score=28.99 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=46.7
Q ss_pred hhhcCccccccCCCc---chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 152 IHKRGGTILGTSRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 152 ~~~~GGs~LGtsR~~---~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
|...|+.+.+..+++ .|+...+..++.-+-|.++++ +.++. +..+.+.+++.|++.+++++...+
T Consensus 172 ~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~~--~~~~~~~~~~~G~~~~~~~~~~~~ 239 (357)
T cd06337 172 LADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPPD--FATFWRQAAQAGFKPKIVTIAKAL 239 (357)
T ss_pred HHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCccH--HHHHHHHHHHCCCCCCeEEEeccc
Confidence 445788888877763 578999999999999997654 44442 344556777789988888754443
No 259
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=23.56 E-value=89 Score=29.59 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=24.3
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 176 l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
++..+.|++|+-||-++-.......+..++..-++||.||
T Consensus 39 ~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGI 78 (195)
T PRK07649 39 IENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGV 78 (195)
T ss_pred HhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEE
Confidence 4567899999999999865432222222222234566665
No 260
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=23.52 E-value=2.9e+02 Score=29.38 Aligned_cols=73 Identities=15% Similarity=0.066 Sum_probs=37.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh----------------HHHHHHHHHHHhhhcCCcEEE
Q 012698 182 NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------------AQRAINAAHVEAESIENGIGV 245 (458)
Q Consensus 182 ~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----------------a~~ai~~i~~~A~s~~~rv~i 245 (458)
+.+|+-....+..++..|.+.+.+.|++-.++.+-..-+.++. ....-..+...|..+..+ .+
T Consensus 146 N~VIlkps~~~p~~~~~l~~~l~~aglP~g~v~~v~g~~~~~~~~L~~~~~i~~V~ftGs~~~g~~v~~~aa~~~~~-~~ 224 (455)
T cd07093 146 NTVVLKPSEWTPLTAWLLAELANEAGLPPGVVNVVHGFGPEAGAALVAHPDVDLISFTGETATGRTIMRAAAPNLKP-VS 224 (455)
T ss_pred CEEEeECCCcCcHHHHHHHHHHHhcCCCccceEEEecCchHHHHHHhcCCCccEEEEECCHHHHHHHHHHHhhcccc-eE
Confidence 4556666666666666666666666665333333221112211 233444455555543333 47
Q ss_pred EEecCCcchh
Q 012698 246 VKLMGRYCGF 255 (458)
Q Consensus 246 VEvMGR~~G~ 255 (458)
.|+-|.+.-+
T Consensus 225 lelgG~~~~i 234 (455)
T cd07093 225 LELGGKNPNI 234 (455)
T ss_pred eecCCCCceE
Confidence 7877766443
No 261
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=23.42 E-value=6.4e+02 Score=23.87 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEee
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (458)
..+.++.+.+ ++|+++++..+.+. .....+.+.+.+++ +|.
T Consensus 48 ~~~~i~~~~~-~vdgiii~~~~~~~--~~~~i~~~~~~~ip--vV~ 88 (275)
T cd06307 48 LAAALLRLGA-RSDGVALVAPDHPQ--VRAAVARLAAAGVP--VVT 88 (275)
T ss_pred HHHHHHHHHh-cCCEEEEeCCCcHH--HHHHHHHHHHCCCc--EEE
Confidence 3456677778 99999999866432 12223444455554 553
No 262
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=23.39 E-value=1.7e+02 Score=29.53 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCc------------hHHHHHHHHHHHHc---CCCeeEeeec
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGT------------QKGAAVIYEEIRQR---GLKVAVAGIP 216 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs------------~~~a~~L~~~~~~~---~~~i~vvgIP 216 (458)
..++..+..+...||+.+++++||-. +..|..|.+.+++. .+.|-+.+-|
T Consensus 74 ~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~P 138 (281)
T TIGR00677 74 EMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYP 138 (281)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECC
Confidence 46778888889999999999999984 23355555555442 2555566666
No 263
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=23.38 E-value=7.4e+02 Score=25.46 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCC-cEEEEEcCCCchHH-HHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcCCcEEEE
Q 012698 169 TSKIVDSIQDRGI-NQVYIIGGDGTQKG-AAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVV 246 (458)
Q Consensus 169 ~~~i~~~l~~~~I-~~LvvIGGdgs~~~-a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~rv~iV 246 (458)
++++-+.+++++. +-.++|.+..+... ..++.+.+.+.+ ...++.+| | +..+.++.+...+... +.=.||
T Consensus 21 l~~l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~~~~----~--~t~~~v~~~~~~~~~~-~~d~II 92 (350)
T PRK00843 21 LDDIGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLEDAG-DVEVVIVD----E--ATMEEVEKVEEKAKDV-NAGFLI 92 (350)
T ss_pred HHHHHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEEeCC----C--CCHHHHHHHHHHhhcc-CCCEEE
Confidence 5566667777765 55666666666553 334555565555 44444333 1 3333444444444443 234588
Q ss_pred EecCCcchhHHHHhhcccCCCceEecCCCC
Q 012698 247 KLMGRYCGFIAMYATLGSRDVDCCLIPESP 276 (458)
Q Consensus 247 EvMGR~~G~lA~~aaLA~~~ad~ilIPE~~ 276 (458)
=+=|+.++.+|-..|... +..+|.||-..
T Consensus 93 aiGGGsv~D~ak~vA~~r-gip~I~IPTT~ 121 (350)
T PRK00843 93 GVGGGKVIDVAKLAAYRL-GIPFISVPTAA 121 (350)
T ss_pred EeCCchHHHHHHHHHHhc-CCCEEEeCCCc
Confidence 888889999987777665 78899999874
No 264
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=23.27 E-value=5.2e+02 Score=22.75 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHH---HHHHHHHHHHcCCCeeEeeecccccCchh--HHHHHHHHHHHhhhcCCcEEE
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKG---AAVIYEEIRQRGLKVAVAGIPKTIDNDIP--AQRAINAAHVEAESIENGIGV 245 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~---a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--a~~ai~~i~~~A~s~~~rv~i 245 (458)
.-++.|+++||..+|-.=.++--.. ...+.+.....| +..+.||-.-+. +. ...+...+.. +.+..|++
T Consensus 18 ~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~g--l~y~~iPv~~~~-~~~~~v~~f~~~~~---~~~~pvL~ 91 (135)
T TIGR01244 18 ADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAG--VTYHHQPVTAGD-ITPDDVETFRAAIG---AAEGPVLA 91 (135)
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCC--CeEEEeecCCCC-CCHHHHHHHHHHHH---hCCCCEEE
Confidence 3445688999999999987742111 112222222334 568888855332 22 2223322222 23467999
Q ss_pred EEecCCcchhHHHHhhcc
Q 012698 246 VKLMGRYCGFIAMYATLG 263 (458)
Q Consensus 246 VEvMGR~~G~lA~~aaLA 263 (458)
--..|..+|++++..-.+
T Consensus 92 HC~sG~Rt~~l~al~~~~ 109 (135)
T TIGR01244 92 YCRSGTRSSLLWGFRQAA 109 (135)
T ss_pred EcCCChHHHHHHHHHHHH
Confidence 999999999998664433
No 265
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.25 E-value=1.3e+02 Score=30.52 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
.-++++.|.++++++||+-.=--| |..|.+- +..+++|||||=
T Consensus 56 ~~~i~~~l~~~~ik~lVIACNTAS---a~al~~L--R~~~~iPVvGvi 98 (269)
T COG0796 56 TLEIVDFLLERGIKALVIACNTAS---AVALEDL--REKFDIPVVGVI 98 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecchHH---HHHHHHH--HHhCCCCEEEec
Confidence 458889999999999999763221 2333332 234678899873
No 266
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=23.09 E-value=7.2e+02 Score=26.83 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=65.7
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH-
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS- 170 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~- 170 (458)
.++||.-+ ||-==.||+++.+.+.+ .+.-++ ++-|.+.|+.. ||- |.=++.|+.
T Consensus 11 ~~~gI~sV---Csahp~VieAAl~~a~~--~~~pvL--------------iEAT~NQVnq~---GGY---TGmtP~dF~~ 65 (420)
T TIGR02810 11 EPRGIYSV---CSAHPLVLEAAIRRARA--SGTPVL--------------IEATSNQVNQF---GGY---TGMTPADFRD 65 (420)
T ss_pred CCCeEEEE---CCCCHHHHHHHHHHHhh--cCCcEE--------------EEecccccccc---CCc---CCCCHHHHHH
Confidence 35677765 44444799998887754 222333 67888888776 774 666666654
Q ss_pred HHHHHHHHcCCcE-EEEEcCCC-------------chHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 171 KIVDSIQDRGINQ-VYIIGGDG-------------TQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 171 ~i~~~l~~~~I~~-LvvIGGdg-------------s~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
-+.+.-++.+++. .+++|||- +|..|..+.+..-+.||. -|+|=.|+|
T Consensus 66 ~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~ 127 (420)
T TIGR02810 66 FVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG 127 (420)
T ss_pred HHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC
Confidence 4455567789998 99999983 355566666655566775 455555544
No 267
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.70 E-value=6.6e+02 Score=23.76 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEee
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (458)
..+.++.+...++|++++.+.+.. ....+.+.+.++++++-+++
T Consensus 44 ~~~~i~~~~~~~~Dgiii~~~~~~--~~~~~i~~~~~~~iPvV~~~ 87 (282)
T cd06318 44 QIADVEDLLTRGVNVLIINPVDPE--GLVPAVAAAKAAGVPVVVVD 87 (282)
T ss_pred HHHHHHHHHHcCCCEEEEecCCcc--chHHHHHHHHHCCCCEEEec
Confidence 456788889999999998765422 12223344455565543333
No 268
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.65 E-value=4.3e+02 Score=25.84 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=41.7
Q ss_pred hhcCccccccCCC---cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 153 HKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 153 ~~~GGs~LGtsR~---~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
...|++++.+... ..++...+..+++.+.|++++.+..+. +..+.+.+.+.|+++++++.
T Consensus 161 ~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~---~~~~~~~~~~~g~~~~i~~~ 223 (334)
T cd06347 161 KKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTE---VGLIAKQARELGIKVPILGG 223 (334)
T ss_pred HHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhh---HHHHHHHHHHcCCCCcEEec
Confidence 3457777766443 357888888999999999888765553 34455666777887777664
No 269
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=22.43 E-value=7.3e+02 Score=24.16 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=52.6
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
-+||++. |.+.|.++.-+.+....++..++..+++..+- |+--....-.+
T Consensus 121 ~kVG~I~-g~~~~~~~~~~~gF~~G~~~~~p~~~v~~~~~-----------------------------g~~~D~~~a~~ 170 (258)
T cd06353 121 NKVGYVA-AFPIPEVVRGINAFALGARSVNPDATVKVIWT-----------------------------GSWFDPAKEKE 170 (258)
T ss_pred CcEEEEc-CcccHHHHHHHHHHHHHHHHHCCCcEEEEEEe-----------------------------cCCCCcHHHHH
Confidence 4788884 56778888888887776654455445443211 11011223467
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
+++.|...+.|.++..+ + + .++.+ .+++.| +.+||+-.-
T Consensus 171 ~a~~l~~~G~DvI~~~~-~-~-~g~~~---aa~~~g--~~~IG~d~d 209 (258)
T cd06353 171 AALALIDQGADVIYQHT-D-S-PGVIQ---AAEEKG--VYAIGYVSD 209 (258)
T ss_pred HHHHHHHCCCcEEEecC-C-C-hHHHH---HHHHhC--CEEEeeccc
Confidence 77888889999988887 2 2 23332 333455 468887533
No 270
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=22.36 E-value=2.4e+02 Score=28.17 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=38.3
Q ss_pred CcEEEEEecCCcchhHHHHhhcccCCC---ceEecCCCCCCccchhhHHHHHHHHHHhC--CcEEEEEeCCCC
Q 012698 241 NGIGVVKLMGRYCGFIAMYATLGSRDV---DCCLIPESPFYLEGEGGLYEFIEKRLKEN--GHMVIVIAEGAG 308 (458)
Q Consensus 241 ~rv~iVEvMGR~~G~lA~~aaLA~~~a---d~ilIPE~~~~l~~~~~~~~~i~~r~~~~--~~~vVvVaEGa~ 308 (458)
+++.++|+ +.||+.+.+|+=...+ .++|+||.|- .-.+.|++++++. ...-|+++.-.+
T Consensus 90 ~~~~i~~~---~~G~v~anAGID~SNv~~g~~~LLP~DPd------~SA~~ir~~l~~~~g~~v~VIItDt~g 153 (245)
T PRK13293 90 APFILTET---KHGHVCANAGIDESNVPDGDLLLLPENPD------ESAERIREGLEELTGKKVGVIITDTNG 153 (245)
T ss_pred CCeEEEEe---ccceEEeccccccccCCCCeEEecCCCHH------HHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 45667776 6799988888764333 2789999874 4556677766552 344466666543
No 271
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.24 E-value=9.2e+02 Score=25.28 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=84.7
Q ss_pred EEEccCCCCcchh-HHHHHHHHHHHHhcCCc------EE--EEEcccccccccCCc-ccC----C---hhHHhchhhcCc
Q 012698 95 CIVTCGGLCPGLN-TVIREIVCGLYHMYGVS------KI--LGIDGGYRGFYSKNT-INL----T---PKVVNDIHKRGG 157 (458)
Q Consensus 95 aIltsGG~apGmN-avIr~~v~~~~~~~~~~------~v--~Gi~~G~~GL~~~~~-~~L----~---~~~v~~~~~~GG 157 (458)
+|+++||==|=+| ..+..+++.+...++.+ .| .|+..+++-|.+.+. +.| . .+.-..
T Consensus 163 ~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~------ 236 (356)
T PRK14462 163 NIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSE------ 236 (356)
T ss_pred CeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHH------
Confidence 8888877778888 45666666664322221 11 454555555444332 111 1 111111
Q ss_pred cccccCCCcchHHHHHHHHHHcC--------CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh-----
Q 012698 158 TILGTSRGGHDTSKIVDSIQDRG--------INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----- 224 (458)
Q Consensus 158 s~LGtsR~~~~~~~i~~~l~~~~--------I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----- 224 (458)
+.+.++. ..++.+.++++.|- |.+.++=|=|++...|.+|++.++.. +..|--||= |+++
T Consensus 237 -l~pv~~~-~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l--~~~VnLIPy---n~~~~~~~~ 309 (356)
T PRK14462 237 -LMPINKA-YNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGI--KAKVNLILF---NPHEGSKFE 309 (356)
T ss_pred -hCCCCcc-CCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhc--CcEEEEEeC---CCCCCCCCC
Confidence 2233332 13455666555442 67888888899999999999988654 445555664 2332
Q ss_pred --HHHHHHHHHHHhhhcCCcEEEEEecCCc----chhHHH
Q 012698 225 --AQRAINAAHVEAESIENGIGVVKLMGRY----CGFIAM 258 (458)
Q Consensus 225 --a~~ai~~i~~~A~s~~~rv~iVEvMGR~----~G~lA~ 258 (458)
..+.+.....-..++.-.+.|-..+|++ ||-|+.
T Consensus 310 ~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI~aACGQL~~ 349 (356)
T PRK14462 310 RPSLEDMIKFQDYLNSKGLLCTIRESKGLDISAACGQLRE 349 (356)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccchh
Confidence 4455555554444433468888889886 455443
No 272
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=21.94 E-value=4.2e+02 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=14.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcCCC
Q 012698 182 NQVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (458)
Q Consensus 182 ~~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (458)
+.+|+-....+-.++..|.+.+.+.|++
T Consensus 146 N~VvlKps~~~p~~~~~l~~~~~~aGlP 173 (454)
T cd07109 146 NAVVVKPAEDAPLTALRLAELAEEAGLP 173 (454)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCcC
Confidence 4455555555555555555555554544
No 273
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.75 E-value=4.8e+02 Score=21.95 Aligned_cols=26 Identities=12% Similarity=0.428 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHcCC-cEEEEEcCCCch
Q 012698 168 DTSKIVDSIQDRGI-NQVYIIGGDGTQ 193 (458)
Q Consensus 168 ~~~~i~~~l~~~~I-~~LvvIGGdgs~ 193 (458)
...++++.+++.+- +..+++||...-
T Consensus 66 ~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 66 LMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 45666666777666 666777776543
No 274
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.68 E-value=6.1e+02 Score=24.90 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=42.4
Q ss_pred chhhcCccccccCCCc---chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEee
Q 012698 151 DIHKRGGTILGTSRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (458)
Q Consensus 151 ~~~~~GGs~LGtsR~~---~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (458)
.+...|+.+.++.+.+ .|+...+..+++.+-|.+|+.+... .+..+.+.+++.|++.++++
T Consensus 160 ~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 160 AFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred HHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 3445677777765543 4788999999999999998875433 33444555666788777665
No 275
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=21.65 E-value=1.7e+02 Score=27.28 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=36.4
Q ss_pred EecCCcchhHHHHhhcccCCCceEecCCCCCCccc--hhhHHHHHHHHHHhCCcEEEEEe
Q 012698 247 KLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG--EGGLYEFIEKRLKENGHMVIVIA 304 (458)
Q Consensus 247 EvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~--~~~~~~~i~~r~~~~~~~vVvVa 304 (458)
++=|+..=.+++..+|+. .++++++=|---.+|. ...+.+.|++ +++++..+|+++
T Consensus 137 ~LS~G~~qrl~la~al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~~tii~~t 194 (214)
T TIGR02673 137 QLSGGEQQRVAIARAIVN-SPPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTTVIVAT 194 (214)
T ss_pred hCCHHHHHHHHHHHHHhC-CCCEEEEeCCcccCCHHHHHHHHHHHHH-HHHcCCEEEEEe
Confidence 455556667899999999 7999988665444443 3445666664 333456666655
No 276
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=21.49 E-value=2.6e+02 Score=26.96 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCC--chHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDG--TQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdg--s~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
++.+++++.+.+.+-|++++ ||.. +......+.+.+++ ..++||+--|.+.+.
T Consensus 11 e~~~~ia~~v~~~gtDaI~V-GGS~gvt~~~~~~~v~~ik~-~~~lPvilfp~~~~~ 65 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMV-GGSLGIVESNLDQTVKKIKK-ITNLPVILFPGNVNG 65 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEE-cCcCCCCHHHHHHHHHHHHh-hcCCCEEEECCCccc
Confidence 34677888999999999855 5553 33445555566654 357889988988664
No 277
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=21.46 E-value=6e+02 Score=28.23 Aligned_cols=99 Identities=17% Similarity=0.308 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCc-cccccCCCcchHHHHHHHHH-HcCCcEEEEEcC
Q 012698 112 EIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGG-TILGTSRGGHDTSKIVDSIQ-DRGINQVYIIGG 189 (458)
Q Consensus 112 ~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GG-s~LGtsR~~~~~~~i~~~l~-~~~I~~LvvIGG 189 (458)
=+.++|.+ .+...|||+..-| +-.-++.+..-++ ...|++..- .-.-+++-.. -.||.++|+-=|
T Consensus 9 YLf~RL~q-~gvksvfgVPGDF-----------NL~LLD~l~~~~~lrwvGn~NEL-NaAYAADGYAR~~Gi~a~VtTfg 75 (561)
T KOG1184|consen 9 YLFRRLVQ-AGVKTVFGVPGDF-----------NLSLLDKLYAVPGLRWVGNCNEL-NAAYAADGYARSKGIGACVTTFG 75 (561)
T ss_pred HHHHHHHH-cCCceeEECCCcc-----------cHHHHHHhhhcCCceeecccchh-hhhhhhcchhhhcCceEEEEEec
Confidence 35667764 5888999887643 2333444445555 235554431 1222333332 368999999988
Q ss_pred CCchHHHHHHHHHHHHc-CCCeeEeeecccccCchh
Q 012698 190 DGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 190 dgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~ 224 (458)
-|.+.+-+-++=...++ ++ +-|||+|-|=|++-.
T Consensus 76 VGeLSAlNGIAGsYAE~vpV-ihIVG~Pnt~~q~t~ 110 (561)
T KOG1184|consen 76 VGELSALNGIAGAYAENVPV-IHIVGVPNTNDQGTQ 110 (561)
T ss_pred cchhhhhcccchhhhhcCCE-EEEECCCCccccccc
Confidence 88888766665433332 32 678899999887755
No 278
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=21.36 E-value=8.1e+02 Score=24.32 Aligned_cols=65 Identities=8% Similarity=0.062 Sum_probs=42.5
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTS 170 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~~ 170 (458)
..||++...-.-|-...++.++-..+.+ ++ ..++ +.++.. .....
T Consensus 60 ~~Igvi~~~~~~~f~~~l~~gi~~~~~~-~g-y~~~--------------------------------~~~~~~~~~~~~ 105 (346)
T PRK10401 60 DTIGVVVMDVSDAFFGALVKAVDLVAQQ-HQ-KYVL--------------------------------IGNSYHEAEKER 105 (346)
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCChHHHH
Confidence 4799998766678888888888877753 33 2332 001111 12234
Q ss_pred HHHHHHHHcCCcEEEEEcCC
Q 012698 171 KIVDSIQDRGINQVYIIGGD 190 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGd 190 (458)
+.++.|...++|++++.+..
T Consensus 106 ~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 106 HAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred HHHHHHHhcCCCEEEEeCCC
Confidence 56777888999999999754
No 279
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.28 E-value=5.3e+02 Score=24.29 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCC
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDG 191 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdg 191 (458)
...+.+.+...++|++++.+.+.
T Consensus 47 ~~~~~~~l~~~~vdgiii~~~~~ 69 (268)
T cd06277 47 EFELPSFLEDGKVDGIILLGGIS 69 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC
Confidence 34566778889999999998654
No 280
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=21.26 E-value=3.5e+02 Score=26.74 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=25.5
Q ss_pred ceEEEEEccCCCCcchhH---HHHHHHHHHHHhcCCcEEEEE
Q 012698 91 EVHACIVTCGGLCPGLNT---VIREIVCGLYHMYGVSKILGI 129 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNa---vIr~~v~~~~~~~~~~~v~Gi 129 (458)
++||+|++ ||+.|=-.+ ..+.+...+.+ .++++.-+
T Consensus 4 ~~~v~~~~-g~~~~~~~~~~~s~~~i~~al~~--~g~~v~~i 42 (304)
T PRK01372 4 FGKVAVLM-GGTSAEREVSLNSGAAVLAALRE--AGYDAHPI 42 (304)
T ss_pred CcEEEEEe-CCCCCCceEeHHhHHHHHHHHHH--CCCEEEEE
Confidence 45899877 778887777 66667777754 45677655
No 281
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=21.17 E-value=2.6e+02 Score=25.48 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=37.9
Q ss_pred CceEEEEEccCCCCc---chhHHHHHHHHHHHHhcCCcEEEEEc--------------cc--ccccccCC--cccCChhH
Q 012698 90 DEVHACIVTCGGLCP---GLNTVIREIVCGLYHMYGVSKILGID--------------GG--YRGFYSKN--TINLTPKV 148 (458)
Q Consensus 90 ~~~~iaIltsGG~ap---GmNavIr~~v~~~~~~~~~~~v~Gi~--------------~G--~~GL~~~~--~~~L~~~~ 148 (458)
+.++++++.+|+..+ --+.+++-+...+.+ .+.+++|.. +| |-||..++ -.+++.+.
T Consensus 77 ~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~--~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~~~~~~~~~r 154 (167)
T TIGR01752 77 TGKTVALFGLGDQEGYSETFCDGMGILYDKIKA--RGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEER 154 (167)
T ss_pred CCCEEEEEecCCCCcccHHHHHHHHHHHHHHHH--cCCeEEceecCCCcccccchheeCCCEEEEEEecCCCchhhhHHH
Confidence 457899999987542 235667777666643 345777743 33 55665332 35666666
Q ss_pred Hhchh
Q 012698 149 VNDIH 153 (458)
Q Consensus 149 v~~~~ 153 (458)
++.|.
T Consensus 155 ~~~w~ 159 (167)
T TIGR01752 155 IEKWV 159 (167)
T ss_pred HHHHH
Confidence 66664
No 282
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.93 E-value=7.1e+02 Score=23.50 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
....+.+.|..+++|++++.+.+.+-. ...+ +.+.+.+ ||||.+-
T Consensus 48 ~~~~~~~~l~~~~vDgiii~~~~~~~~-~~~i-~~~~~~g--IpvV~~d 92 (274)
T cd06311 48 QQNAQQDLLINRKIDALVILPFESAPL-TQPV-AKAKKAG--IFVVVVD 92 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCchhh-HHHH-HHHHHCC--CeEEEEc
Confidence 456788889999999999987654321 1222 3334445 5566653
No 283
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=20.93 E-value=1.1e+02 Score=28.13 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=14.3
Q ss_pred HcCCcEEEEEcCCCchHH
Q 012698 178 DRGINQVYIIGGDGTQKG 195 (458)
Q Consensus 178 ~~~I~~LvvIGGdgs~~~ 195 (458)
..++|++|+.||.++...
T Consensus 40 ~~~~dgvil~gG~~~~~~ 57 (184)
T cd01743 40 LLNPDAIVISPGPGHPED 57 (184)
T ss_pred hcCCCEEEECCCCCCccc
Confidence 357999999999998543
No 284
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=20.87 E-value=1.7e+02 Score=28.55 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=39.0
Q ss_pred EEecCCcchhHHHHhhcccCCCceEecCCCCCCccc--hhhHHHHHHHHHHhCCcEEEEEeCC
Q 012698 246 VKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG--EGGLYEFIEKRLKENGHMVIVIAEG 306 (458)
Q Consensus 246 VEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~--~~~~~~~i~~r~~~~~~~vVvVaEG 306 (458)
-++-|+..=-+++..+|+. .++++++=|---.+|. .+.+.+.|++..++.+..||+++--
T Consensus 149 ~~LSgGe~qrv~laral~~-~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 210 (265)
T TIGR02769 149 RQLSGGQLQRINIARALAV-KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 (265)
T ss_pred hhCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 3555666666888999998 8999998665544543 3345666664444346677777643
No 285
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=20.86 E-value=3e+02 Score=27.48 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=39.7
Q ss_pred CCcEEEEEecCCcchhHHHHhhcccCCC---ceEecCCCCCCccchhhHHHHHHHHHHhC--CcEEEEEeCCC
Q 012698 240 ENGIGVVKLMGRYCGFIAMYATLGSRDV---DCCLIPESPFYLEGEGGLYEFIEKRLKEN--GHMVIVIAEGA 307 (458)
Q Consensus 240 ~~rv~iVEvMGR~~G~lA~~aaLA~~~a---d~ilIPE~~~~l~~~~~~~~~i~~r~~~~--~~~vVvVaEGa 307 (458)
+..+.++|+ ..||+...+|+=...+ .++|+|+.|. ...+.|++.+++. ...-|+++.-.
T Consensus 88 ~~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd------~sA~~ir~~l~~~~g~~v~VIItDt~ 151 (243)
T TIGR01916 88 GTPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPD------ASAEKIRRGLRELTGVDVGVIITDTN 151 (243)
T ss_pred cCCeEEEEe---cCceEEeccccccccCCCCeEEecCCChH------HHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 456888887 6789988888764333 3788999874 5667777777652 34446666543
No 286
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=20.72 E-value=2.5e+02 Score=25.50 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHc--CCcEEEEEcCCCchHH-HHHHHHHHHHcCCCe
Q 012698 168 DTSKIVDSIQDR--GINQVYIIGGDGTQKG-AAVIYEEIRQRGLKV 210 (458)
Q Consensus 168 ~~~~i~~~l~~~--~I~~LvvIGGdgs~~~-a~~L~~~~~~~~~~i 210 (458)
+.+++.+.+++. .+.++.+-||+ .+.. ...|.+.+++.|+++
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCE
Confidence 345555555555 57899999999 4433 446666666666554
No 287
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=20.69 E-value=1.5e+02 Score=32.63 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHcC---CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 168 DTSKIVDSIQDRG---INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 168 ~~~~i~~~l~~~~---I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
..+++.+.|.+.+ -|.++.|||--++..|..++... .+| +++|.||-|.
T Consensus 254 ~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTl 305 (542)
T PRK14021 254 VANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSL 305 (542)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChH
Confidence 3567778888884 89999999988888877776422 234 6799999994
No 288
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=20.47 E-value=5.3e+02 Score=21.84 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=41.8
Q ss_pred HHcCCcEEEEEcCCC-chHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcCCcEEEEEecCCc
Q 012698 177 QDRGINQVYIIGGDG-TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVVKLMGRY 252 (458)
Q Consensus 177 ~~~~I~~LvvIGGdg-s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~rv~iVEvMGR~ 252 (458)
..|+++..+.||-+| |-.-...+.+.+.++.+ |.|- |.++-.-| ..++.+.+..... .-+|.+.||.
T Consensus 12 ~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hEL-IKVk-vl~~~~~~--~~e~a~~i~~~~~-----a~~Vq~iG~~ 79 (95)
T TIGR00253 12 KAHHLKPVVLVGKNGLTEGVIKEIEQALEHREL-IKVK-VATEDRED--KTLIAEALVKETG-----ACNVQVIGKT 79 (95)
T ss_pred HhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCc-EEEE-ecCCChhH--HHHHHHHHHHHHC-----CEEEEEEccE
Confidence 357999999999999 45556677788877776 4433 33332222 3344454433332 3488888864
No 289
>PRK09526 lacI lac repressor; Reviewed
Probab=20.38 E-value=8.3e+02 Score=24.05 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCcEEEEEcCC
Q 012698 169 TSKIVDSIQDRGINQVYIIGGD 190 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGd 190 (458)
..+.++.|...++|++++.+..
T Consensus 109 ~~~~l~~l~~~~vdGiii~~~~ 130 (342)
T PRK09526 109 CQAAVNELLAQRVSGVIINVPL 130 (342)
T ss_pred HHHHHHHHHhcCCCEEEEecCC
Confidence 3467788899999999997543
No 290
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=20.25 E-value=3e+02 Score=27.56 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=45.4
Q ss_pred chhh--cCccccccCCC---c-chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 151 DIHK--RGGTILGTSRG---G-HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 151 ~~~~--~GGs~LGtsR~---~-~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
.+.. .|+++++..+. . .|+...+..+++.+.|++++++..+ .+..+.+.+++.|++.++++..
T Consensus 166 ~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~ 234 (342)
T cd06329 166 MLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYTPY 234 (342)
T ss_pred HHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEecc
Confidence 3445 77888877554 3 5778888999999999999877443 2345667777889887777653
No 291
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=20.24 E-value=5.3e+02 Score=27.45 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=38.5
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC-c--ccCChhHHhchhhcCccccccCCCc
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN-T--INLTPKVVNDIHKRGGTILGTSRGG 166 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~-~--~~L~~~~v~~~~~~GGs~LGtsR~~ 166 (458)
+.+||.||-+||- =++.++.+.+ .-...++|.... -.|..... . .++ ..
T Consensus 3 ~~~kvLviG~g~r---ehal~~~~~~----~~~~~~~~~~pg-n~g~~~~~~~~~~~~--------------------~~ 54 (426)
T PRK13789 3 VKLKVLLIGSGGR---ESAIAFALRK----SNLLSELKVFPG-NGGFPDDELLPADSF--------------------SI 54 (426)
T ss_pred CCcEEEEECCCHH---HHHHHHHHHh----CCCCCEEEEECC-chHHhccccccccCc--------------------Cc
Confidence 3579999999884 3455555433 222347776442 22332110 0 001 12
Q ss_pred chHHHHHHHHHHcCCcEEEE
Q 012698 167 HDTSKIVDSIQDRGINQVYI 186 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~Lvv 186 (458)
.|.+.+++.+++++||.+++
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~ 74 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVV 74 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEE
Confidence 46777788888888888775
No 292
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=20.16 E-value=1.7e+02 Score=27.16 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=34.2
Q ss_pred EecCCcchhHHHHhhcccCCCceEecCCCCCCccc--hhhHHHHHHHHHHhCCcEEEEEe
Q 012698 247 KLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG--EGGLYEFIEKRLKENGHMVIVIA 304 (458)
Q Consensus 247 EvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~--~~~~~~~i~~r~~~~~~~vVvVa 304 (458)
++-|+.-=-+++..+|+. .++++++=|-.-.+|. .+.+.+.+.+.+.+++..||+++
T Consensus 127 ~lS~G~~qrv~laral~~-~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~s 185 (204)
T cd03250 127 NLSGGQKQRISLARAVYS-DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVT 185 (204)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 344444556788889998 8999999886555553 22344433333333456666654
Done!