Query 012698
Match_columns 458
No_of_seqs 247 out of 1562
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:30:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 1.2E-95 4E-100 767.0 29.9 406 19-437 20-455 (487)
2 1zxx_A 6-phosphofructokinase; 100.0 3.7E-82 1.3E-86 636.9 32.1 295 92-429 2-316 (319)
3 1pfk_A Phosphofructokinase; tr 100.0 4.1E-82 1.4E-86 636.9 30.8 295 92-429 3-318 (320)
4 3hno_A Pyrophosphate-dependent 100.0 8.7E-82 3E-86 654.7 30.1 327 91-431 3-387 (419)
5 3o8o_A 6-phosphofructokinase s 100.0 5.1E-82 1.7E-86 693.6 26.3 386 18-432 306-765 (787)
6 3o8l_A 6-phosphofructokinase, 100.0 2.7E-82 9.4E-87 695.5 22.7 385 18-432 316-748 (762)
7 4a3s_A 6-phosphofructokinase; 100.0 7.1E-81 2.4E-85 628.9 31.1 296 92-430 2-317 (319)
8 3o8o_B 6-phosphofructokinase s 100.0 3.9E-82 1.3E-86 694.6 23.0 385 18-431 306-754 (766)
9 3opy_B 6-phosphofructo-1-kinas 100.0 3.8E-82 1.3E-86 701.7 22.8 385 18-431 484-930 (941)
10 3opy_A 6-phosphofructo-1-kinas 100.0 2E-80 6.7E-85 686.3 24.5 386 18-432 511-976 (989)
11 2f48_A Diphosphate--fructose-6 100.0 1.4E-79 4.6E-84 656.5 29.8 393 27-429 11-514 (555)
12 3o8l_A 6-phosphofructokinase, 100.0 5.6E-77 1.9E-81 653.5 24.3 329 90-446 14-386 (762)
13 3o8o_B 6-phosphofructokinase s 100.0 2.1E-74 7.1E-79 633.4 29.6 328 91-446 3-376 (766)
14 3o8o_A 6-phosphofructokinase s 100.0 2E-74 7E-79 633.4 26.5 329 89-446 3-376 (787)
15 3opy_B 6-phosphofructo-1-kinas 100.0 6.5E-74 2.2E-78 636.0 25.6 328 91-446 181-554 (941)
16 3opy_A 6-phosphofructo-1-kinas 100.0 1.3E-73 4.3E-78 632.1 27.0 328 90-446 209-581 (989)
17 2an1_A Putative kinase; struct 94.8 0.046 1.6E-06 53.3 7.0 106 92-234 6-118 (292)
18 3g1w_A Sugar ABC transporter; 93.1 4.9 0.00017 37.7 17.5 165 90-296 3-185 (305)
19 2i2c_A Probable inorganic poly 90.2 0.12 4.1E-06 50.1 2.4 61 169-233 17-91 (272)
20 3egc_A Putative ribose operon 87.8 10 0.00035 35.2 14.1 92 90-220 7-98 (291)
21 3l49_A ABC sugar (ribose) tran 85.6 13 0.00045 34.3 13.5 119 90-246 4-131 (291)
22 3h5o_A Transcriptional regulat 84.7 28 0.00097 33.2 19.1 160 91-296 62-237 (339)
23 3qk7_A Transcriptional regulat 84.4 26 0.0009 32.6 15.8 127 91-260 6-153 (294)
24 3dbi_A Sugar-binding transcrip 84.3 29 0.00099 33.0 19.5 90 91-219 61-153 (338)
25 3k4h_A Putative transcriptiona 83.8 25 0.00087 32.3 14.6 91 90-220 7-103 (292)
26 1z0s_A Probable inorganic poly 82.6 0.44 1.5E-05 46.6 1.7 43 169-217 42-99 (278)
27 3brq_A HTH-type transcriptiona 82.1 31 0.001 31.7 17.9 90 91-220 19-112 (296)
28 3kjx_A Transcriptional regulat 81.6 38 0.0013 32.4 19.6 85 91-215 68-153 (344)
29 2o20_A Catabolite control prot 80.3 41 0.0014 31.9 17.8 89 91-219 63-152 (332)
30 3gv0_A Transcriptional regulat 79.1 40 0.0014 31.1 16.5 88 91-217 8-97 (288)
31 1u0t_A Inorganic polyphosphate 77.6 0.97 3.3E-05 44.4 2.3 51 178-234 73-130 (307)
32 2fep_A Catabolite control prot 77.4 45 0.0015 30.8 14.5 127 91-260 16-161 (289)
33 2qv7_A Diacylglycerol kinase D 76.7 3.8 0.00013 40.4 6.4 51 171-224 71-121 (337)
34 3pfn_A NAD kinase; structural 76.6 1.2 4.1E-05 45.2 2.8 108 83-216 30-139 (365)
35 3bbl_A Regulatory protein of L 75.9 49 0.0017 30.5 17.3 90 91-219 4-97 (287)
36 3kke_A LACI family transcripti 75.2 44 0.0015 31.2 13.4 127 91-260 15-158 (303)
37 3m9w_A D-xylose-binding peripl 75.1 44 0.0015 31.2 13.4 93 91-220 2-94 (313)
38 3gbv_A Putative LACI-family tr 74.0 54 0.0018 30.1 15.9 177 90-306 7-210 (304)
39 2bon_A Lipid kinase; DAG kinas 73.3 9.2 0.00032 37.5 8.2 75 171-251 73-157 (332)
40 3e3m_A Transcriptional regulat 71.9 71 0.0024 30.6 17.4 158 91-295 70-247 (355)
41 1yt5_A Inorganic polyphosphate 71.5 0.94 3.2E-05 43.3 0.4 48 179-233 40-94 (258)
42 3l6u_A ABC-type sugar transpor 71.1 63 0.0021 29.6 16.0 95 90-221 7-101 (293)
43 2rgy_A Transcriptional regulat 70.7 66 0.0022 29.6 16.9 127 91-260 8-155 (290)
44 3afo_A NADH kinase POS5; alpha 69.5 1.2 4E-05 45.7 0.6 33 179-216 113-146 (388)
45 3ksm_A ABC-type sugar transpor 68.8 67 0.0023 29.0 15.0 94 92-220 1-95 (276)
46 2vk2_A YTFQ, ABC transporter p 68.1 71 0.0024 29.6 13.0 91 91-220 2-94 (306)
47 3bil_A Probable LACI-family tr 67.9 87 0.003 29.9 17.7 127 91-260 66-211 (348)
48 3d8u_A PURR transcriptional re 67.3 72 0.0025 28.8 17.3 86 92-217 4-90 (275)
49 3s40_A Diacylglycerol kinase; 66.9 6.9 0.00024 38.0 5.6 78 168-252 52-137 (304)
50 1dbq_A Purine repressor; trans 66.8 76 0.0026 28.9 14.8 92 91-220 7-98 (289)
51 3iv7_A Alcohol dehydrogenase I 65.8 5.6 0.00019 40.0 4.8 48 167-219 75-122 (364)
52 3s4y_A Thiamin pyrophosphokina 65.0 38 0.0013 32.1 10.3 94 90-192 19-134 (247)
53 3hl0_A Maleylacetate reductase 64.6 6.5 0.00022 39.3 5.0 48 167-219 74-121 (353)
54 3l8m_A Probable thiamine pyrop 64.3 20 0.00067 33.2 7.9 69 123-192 22-101 (212)
55 3jzd_A Iron-containing alcohol 63.7 6.3 0.00021 39.5 4.7 48 167-219 76-123 (358)
56 3rot_A ABC sugar transporter, 63.3 94 0.0032 28.7 14.1 94 91-221 3-98 (297)
57 3tb6_A Arabinose metabolism tr 62.2 93 0.0032 28.3 13.6 92 92-218 16-108 (298)
58 3uhj_A Probable glycerol dehyd 62.1 7.4 0.00025 39.5 4.9 51 167-222 93-143 (387)
59 3o74_A Fructose transport syst 60.9 94 0.0032 27.9 19.0 88 92-217 3-90 (272)
60 1oj7_A Hypothetical oxidoreduc 59.6 7 0.00024 39.7 4.2 56 167-222 93-164 (408)
61 8abp_A L-arabinose-binding pro 58.9 1.1E+02 0.0038 28.1 15.7 88 91-216 2-89 (306)
62 3k9c_A Transcriptional regulat 58.9 1.1E+02 0.0038 28.1 17.2 87 91-219 12-98 (289)
63 2hsg_A Glucose-resistance amyl 58.6 51 0.0017 31.2 10.1 90 91-220 60-150 (332)
64 1jq5_A Glycerol dehydrogenase; 58.6 11 0.00037 37.5 5.4 51 167-222 73-123 (370)
65 3oow_A Phosphoribosylaminoimid 57.6 14 0.00047 33.4 5.2 86 163-260 43-134 (166)
66 3jy6_A Transcriptional regulat 57.1 73 0.0025 29.0 10.6 92 89-220 5-96 (276)
67 3ox4_A Alcohol dehydrogenase 2 57.0 11 0.00037 38.0 5.1 56 167-222 75-143 (383)
68 3h75_A Periplasmic sugar-bindi 56.5 1.4E+02 0.0046 28.4 16.8 94 91-222 3-99 (350)
69 2dri_A D-ribose-binding protei 55.3 1.2E+02 0.0041 27.4 12.9 86 92-215 2-88 (271)
70 1rrm_A Lactaldehyde reductase; 54.7 12 0.00041 37.5 4.9 56 167-222 75-145 (386)
71 3hcw_A Maltose operon transcri 54.4 87 0.003 28.9 10.8 128 90-260 6-158 (295)
72 2rjo_A Twin-arginine transloca 53.9 1.2E+02 0.0041 28.5 11.9 93 91-221 5-100 (332)
73 3huu_A Transcription regulator 52.8 1.2E+02 0.0042 27.9 11.6 90 91-220 22-117 (305)
74 3lkb_A Probable branched-chain 52.6 42 0.0014 32.4 8.5 106 105-219 125-234 (392)
75 3uug_A Multiple sugar-binding 52.3 1.1E+02 0.0038 28.5 11.3 93 91-220 3-95 (330)
76 3bfj_A 1,3-propanediol oxidore 51.1 16 0.00056 36.5 5.3 56 167-222 79-147 (387)
77 3lup_A DEGV family protein; PS 49.7 1.8E+02 0.0062 27.8 14.3 100 91-201 3-108 (285)
78 3clk_A Transcription regulator 49.1 87 0.003 28.7 9.8 93 91-221 8-100 (290)
79 3nyi_A FAT acid-binding protei 48.0 38 0.0013 32.9 7.2 110 92-213 3-122 (297)
80 3gyb_A Transcriptional regulat 47.8 1.6E+02 0.0054 26.6 13.7 124 91-261 5-144 (280)
81 3clh_A 3-dehydroquinate syntha 47.0 20 0.0007 35.4 5.2 49 167-218 69-120 (343)
82 1xah_A Sadhqs, 3-dehydroquinat 46.6 19 0.00065 35.7 4.9 50 167-219 74-126 (354)
83 3o1i_D Periplasmic protein TOR 46.6 1.6E+02 0.0056 26.8 11.3 69 91-192 5-75 (304)
84 3e61_A Putative transcriptiona 46.4 1.7E+02 0.0057 26.4 11.9 65 91-188 8-72 (277)
85 3c3k_A Alanine racemase; struc 45.9 1.8E+02 0.006 26.5 12.3 88 91-219 8-96 (285)
86 3lkv_A Uncharacterized conserv 45.6 2E+02 0.0067 27.0 12.6 72 89-188 6-77 (302)
87 3miz_A Putative transcriptiona 45.1 73 0.0025 29.4 8.6 127 91-260 13-158 (301)
88 3rf7_A Iron-containing alcohol 45.0 16 0.00054 36.9 4.1 56 167-222 93-164 (375)
89 2nrr_A Uvrabc system protein C 44.7 47 0.0016 29.6 6.6 68 166-236 60-144 (159)
90 4b4k_A N5-carboxyaminoimidazol 44.2 31 0.0011 31.5 5.4 47 209-260 100-151 (181)
91 1vlj_A NADH-dependent butanol 44.1 18 0.0006 36.7 4.3 56 167-222 88-156 (407)
92 1o2d_A Alcohol dehydrogenase, 44.0 14 0.00049 36.9 3.5 56 167-222 85-153 (371)
93 1qpz_A PURA, protein (purine n 43.9 2.1E+02 0.0072 26.9 15.2 68 91-192 58-126 (340)
94 3trh_A Phosphoribosylaminoimid 43.4 33 0.0011 31.0 5.4 86 163-260 44-135 (169)
95 3ce9_A Glycerol dehydrogenase; 42.7 12 0.00041 37.0 2.7 50 167-222 76-125 (354)
96 2fvy_A D-galactose-binding per 41.9 2E+02 0.0069 26.2 16.1 92 92-220 3-95 (309)
97 3jvd_A Transcriptional regulat 41.9 2.3E+02 0.0078 26.7 13.2 222 89-390 62-299 (333)
98 3kuu_A Phosphoribosylaminoimid 40.7 39 0.0013 30.6 5.4 48 208-260 89-141 (174)
99 1uta_A FTSN, MSGA, cell divisi 40.7 46 0.0016 25.4 5.3 51 160-210 14-73 (81)
100 2fn9_A Ribose ABC transporter, 39.9 2.1E+02 0.0072 25.9 10.9 90 92-219 3-93 (290)
101 2qip_A Protein of unknown func 39.0 62 0.0021 28.2 6.6 52 167-221 94-147 (165)
102 3s81_A Putative aspartate race 39.0 63 0.0022 30.8 7.1 44 166-215 85-128 (268)
103 1sg6_A Pentafunctional AROM po 38.9 22 0.00075 35.9 4.0 49 167-218 87-140 (393)
104 1x60_A Sporulation-specific N- 38.5 51 0.0017 24.9 5.2 50 160-209 14-72 (79)
105 4grd_A N5-CAIR mutase, phospho 37.1 30 0.001 31.3 4.1 55 159-220 46-101 (173)
106 3g85_A Transcriptional regulat 36.9 86 0.003 28.6 7.6 30 90-119 10-40 (289)
107 3lm8_A Thiamine pyrophosphokin 36.9 36 0.0012 31.7 4.9 69 124-192 26-105 (222)
108 3okf_A 3-dehydroquinate syntha 36.3 38 0.0013 34.4 5.3 50 167-219 107-159 (390)
109 1ujn_A Dehydroquinate synthase 36.1 37 0.0013 33.6 5.1 49 167-218 68-119 (348)
110 2pbq_A Molybdenum cofactor bio 35.8 21 0.00072 31.9 3.0 27 166-192 50-80 (178)
111 3ors_A N5-carboxyaminoimidazol 35.6 42 0.0014 30.1 4.8 85 164-260 42-132 (163)
112 3lp6_A Phosphoribosylaminoimid 35.3 37 0.0013 30.7 4.4 89 160-260 42-134 (174)
113 2nrt_A Uvrabc system protein C 34.9 85 0.0029 29.4 7.0 68 166-236 65-149 (220)
114 1xmp_A PURE, phosphoribosylami 34.6 40 0.0014 30.4 4.5 13 208-220 88-100 (170)
115 3apt_A Methylenetetrahydrofola 34.5 49 0.0017 32.3 5.6 52 165-216 84-150 (310)
116 3brs_A Periplasmic binding pro 34.4 1.3E+02 0.0046 27.2 8.5 95 90-221 4-102 (289)
117 3ipc_A ABC transporter, substr 33.9 84 0.0029 29.6 7.1 107 104-219 119-229 (356)
118 3qbe_A 3-dehydroquinate syntha 32.7 35 0.0012 34.3 4.3 50 167-219 87-139 (368)
119 3td9_A Branched chain amino ac 32.4 2.5E+02 0.0087 26.3 10.4 67 151-220 173-241 (366)
120 2qu7_A Putative transcriptiona 32.3 1.3E+02 0.0043 27.5 7.9 87 91-220 8-95 (288)
121 3fst_A 5,10-methylenetetrahydr 31.8 59 0.002 31.8 5.7 52 165-216 95-153 (304)
122 1iv0_A Hypothetical protein; r 31.5 69 0.0023 25.9 5.1 18 167-184 38-55 (98)
123 2lnd_A De novo designed protei 31.0 1E+02 0.0035 24.5 5.7 58 151-209 22-79 (112)
124 3eaf_A ABC transporter, substr 29.9 3.5E+02 0.012 25.7 11.1 111 104-222 122-238 (391)
125 3ihk_A Thiamin pyrophosphokina 29.6 1.4E+02 0.0047 27.6 7.5 85 95-192 4-100 (218)
126 2ywx_A Phosphoribosylaminoimid 28.8 57 0.002 29.0 4.5 49 167-217 13-82 (157)
127 3qbe_A 3-dehydroquinate syntha 28.0 2.1E+02 0.007 28.6 9.1 102 169-275 33-138 (368)
128 1kq3_A Glycerol dehydrogenase; 28.0 21 0.00073 35.6 1.7 50 167-222 82-131 (376)
129 2gru_A 2-deoxy-scyllo-inosose 27.4 62 0.0021 32.2 5.0 49 167-218 78-129 (368)
130 1u11_A PURE (N5-carboxyaminoim 27.2 49 0.0017 30.2 3.8 50 164-220 60-110 (182)
131 3h5t_A Transcriptional regulat 27.1 2.9E+02 0.0098 26.2 9.8 43 169-217 117-159 (366)
132 2ekc_A AQ_1548, tryptophan syn 27.0 3.9E+02 0.013 24.9 13.2 50 169-218 4-55 (262)
133 1o4v_A Phosphoribosylaminoimid 26.6 41 0.0014 30.7 3.2 88 160-260 48-140 (183)
134 1usg_A Leucine-specific bindin 26.4 2.6E+02 0.0088 25.9 9.1 63 153-218 163-228 (346)
135 2fqx_A Membrane lipoprotein TM 26.4 4.1E+02 0.014 24.9 18.3 24 167-190 49-72 (318)
136 2x7x_A Sensor protein; transfe 26.3 3.9E+02 0.013 24.7 13.7 92 91-220 6-98 (325)
137 1tjy_A Sugar transport protein 26.1 4E+02 0.014 24.7 10.5 91 92-219 4-95 (316)
138 3pl5_A SMU_165, putative uncha 25.8 1.6E+02 0.0056 28.8 7.7 101 92-205 35-143 (320)
139 3mel_A Thiamin pyrophosphokina 24.9 1.6E+02 0.0056 27.1 7.2 89 95-192 4-104 (222)
140 3rg8_A Phosphoribosylaminoimid 24.6 81 0.0028 28.1 4.7 88 160-259 37-126 (159)
141 3vnd_A TSA, tryptophan synthas 24.4 1.3E+02 0.0045 28.7 6.6 71 169-250 112-182 (267)
142 3jr7_A Uncharacterized EGV fam 24.0 2.4E+02 0.0081 27.2 8.4 100 92-205 20-124 (298)
143 1ta9_A Glycerol dehydrogenase; 23.9 28 0.00097 35.9 1.8 50 167-222 133-182 (450)
144 2h3h_A Sugar ABC transporter, 23.5 4.3E+02 0.015 24.2 12.1 48 169-220 46-93 (313)
145 1vdr_A DHFR, dihydrofolate red 22.5 31 0.0011 30.1 1.5 49 168-223 81-129 (162)
146 3szu_A ISPH, 4-hydroxy-3-methy 22.3 1.6E+02 0.0055 29.2 6.8 40 168-209 214-253 (328)
147 3nav_A Tryptophan synthase alp 22.2 5.1E+02 0.017 24.6 12.3 49 169-217 7-57 (271)
148 3dnf_A ISPH, LYTB, 4-hydroxy-3 21.9 1.6E+02 0.0053 28.8 6.5 40 168-209 198-237 (297)
149 3lp8_A Phosphoribosylamine-gly 21.8 3.2E+02 0.011 27.4 9.3 94 88-214 18-112 (442)
150 1nu0_A Hypothetical protein YQ 21.7 1.2E+02 0.0042 26.0 5.2 26 199-224 45-70 (138)
151 3gh1_A Predicted nucleotide-bi 21.5 2E+02 0.0068 29.8 7.4 18 182-199 249-267 (462)
152 2h0a_A TTHA0807, transcription 21.3 4.3E+02 0.015 23.4 9.9 87 93-219 1-88 (276)
153 2ioy_A Periplasmic sugar-bindi 21.2 4.5E+02 0.015 23.6 10.1 88 92-217 2-90 (283)
154 1qdl_B Protein (anthranilate s 20.7 81 0.0028 28.0 4.0 20 176-195 41-60 (195)
155 1cz3_A Dihydrofolate reductase 20.4 42 0.0014 29.2 2.0 46 168-220 81-128 (168)
156 2iks_A DNA-binding transcripti 20.0 4.8E+02 0.017 23.5 15.2 90 91-219 20-110 (293)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=1.2e-95 Score=766.97 Aligned_cols=406 Identities=38% Similarity=0.623 Sum_probs=360.9
Q ss_pred ccccccchhhhCCCC--CCCcCCCCCCcccccccccccccchhHHHHHHhccCC-------CCcchhhhcCCCcccccCC
Q 012698 19 VLEDVPHLTDYIPDL--PTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-------PRGTHFRRAGPRQKVYFVS 89 (458)
Q Consensus 19 ~~eav~~l~~~~p~~--p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-------~~~~~f~~~~~~~~~~~~~ 89 (458)
-++.|..+--..|.+ |++++||..|.. ...||++++.|+..+....+. .....|+++|||+++||+|
T Consensus 20 ~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~~ 95 (487)
T 2hig_A 20 MLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNP 95 (487)
T ss_dssp SCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSEESSCG
T ss_pred cccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCcceeeecC
Confidence 356666654334433 778889966544 578999999987765432211 1234699999999999999
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---CCcccCChhHHhchhhcCccccccCCCc
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---KNTINLTPKVVNDIHKRGGTILGTSRGG 166 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~---~~~~~L~~~~v~~~~~~GGs~LGtsR~~ 166 (458)
+.+||||+||||||||||++||++++++...++..+||||++||+||++ +++++|+|++|++|+++|||+|||||++
T Consensus 96 ~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~ 175 (487)
T 2hig_A 96 TETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGP 175 (487)
T ss_dssp GGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCCCCSC
T ss_pred CCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeeccCCCC
Confidence 9999999999999999999999999999765676799999999999964 6899999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHH
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAA 232 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i 232 (458)
++.++++++|++++||+||+|||||||++|++|++++.+++++|+|||||||||||++ ++++|+++
T Consensus 176 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~eaId~i 255 (487)
T 2hig_A 176 QDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAA 255 (487)
T ss_dssp CCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999998 66899999
Q ss_pred HHHhhhcCCcEEEEEecCCcchhHHHHhhcccCC-CceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCCcch
Q 012698 233 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRD-VDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDL 311 (458)
Q Consensus 233 ~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~-ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vVvVaEGa~~~~ 311 (458)
++||.||++||||||||||+|||||+++|||+ + ||+|||||.||+++ +++++|++|+++++|+|||||||+++.+
T Consensus 256 ~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~-g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGag~~~ 331 (487)
T 2hig_A 256 YAEAVSANYGVGVVKLMGRDSGFIAAQAAVAS-AQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDW 331 (487)
T ss_dssp HHHHHTSTTEEEEEEECCSSCCHHHHHHHHHH-TCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTTTGGG
T ss_pred HHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhh-CCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCcccc
Confidence 99999987799999999999999999999999 6 99999999999998 7999999999888999999999997654
Q ss_pred hHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceee---eeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHH
Q 012698 312 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMA---INLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGA 388 (458)
Q Consensus 312 ~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~---~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~ 388 (458)
... ...+|++||+++++++.+|+++|+++++.. ... +++|+++|||+|||++||++||+||++||.+||+++
T Consensus 332 ~~~----~~~~Da~G~~~l~~i~~~l~~~i~~~~~~~-g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l 406 (487)
T 2hig_A 332 GRG----SGGYDASGNKKLIDIGVILTEKVKAFLKAN-KSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEA 406 (487)
T ss_dssp CCC------CBCTTSCBCCCCHHHHHHHHHHHHHHTT-TTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccc----ccccccccCcchhHHHHHHHHHHHHHHhhc-CccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 422 235799999999999999999999988421 112 378999999999999999999999999999999999
Q ss_pred HcCCCceEEEEECCeEeeechhhhhhcCCccCccHHHHHHHHHhcCCCC
Q 012698 389 VAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPS 437 (458)
Q Consensus 389 ~~G~tg~mvgi~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~l~~tgqp~ 437 (458)
++|+||+||++++++++++||+++++..|.+++++.||.+++..++|+.
T Consensus 407 ~~G~tg~mVgi~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~ 455 (487)
T 2hig_A 407 MAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG 455 (487)
T ss_dssp HTTEESEEEEEETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC
T ss_pred HcCCCCEEEEEECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999986
No 2
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=3.7e-82 Score=636.88 Aligned_cols=295 Identities=26% Similarity=0.370 Sum_probs=271.5
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcc----
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~---- 167 (458)
+||||+||||||||||++||++++++.. + +.+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIA-N-GLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHT-T-TCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 5899999999999999999999999863 4 569999999999999999999999999999999999999999864
Q ss_pred -hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHH
Q 012698 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAA 232 (458)
Q Consensus 168 -~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i 232 (458)
++++++++|++++||+||+||||||+++|++|+++ .|+|||||||||||++ ++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 153 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999874 5789999999999999 56889999
Q ss_pred HHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012698 233 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 311 (458)
Q Consensus 233 ~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~ 311 (458)
+++|+|| +||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|+|||||||+..
T Consensus 154 ~~ta~s~-~rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-- 226 (319)
T 1zxx_A 154 RDTASSH-HRVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVMT-- 226 (319)
T ss_dssp HHHHHHT-TCEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCCCEEEEEETTTCC--
T ss_pred HHHHhcC-CCEEEEEeCCCCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcCh--
Confidence 9999996 589999999999999999999999 899999999999987 799999999865 78999999999842
Q ss_pred hHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012698 312 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 391 (458)
Q Consensus 312 ~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G 391 (458)
+++|+++|+++++ +++|+++|||+|||++||++||.||++||.+||+++++|
T Consensus 227 ----------------------~~~l~~~i~~~~~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 278 (319)
T 1zxx_A 227 ----------------------ADQFMAELKKYGD------FDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEG 278 (319)
T ss_dssp ----------------------HHHHHHHHHHSSC------CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHhhC------ceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4578899988754 457888999999999999999999999999999999999
Q ss_pred CCceEEEEECCeEeeechhhhhhcCCccCccHHHHHHH
Q 012698 392 YTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARV 429 (458)
Q Consensus 392 ~tg~mvgi~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~ 429 (458)
++|+||++++++++++||+++++++|+++++.....+.
T Consensus 279 ~~g~mv~~~~~~~~~~pl~~~~~~~k~~~~~~~~~~~~ 316 (319)
T 1zxx_A 279 KGGLAVGIENGKVTSHDILDLFDESHRGDYDLLKLNAD 316 (319)
T ss_dssp CCSEEEEEETTEEEEEEHHHHTTCCCCCCTHHHHHHHH
T ss_pred CCCEEEEEECCEEEEEEHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998766554443
No 3
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=4.1e-82 Score=636.87 Aligned_cols=295 Identities=27% Similarity=0.390 Sum_probs=271.2
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcc----
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~---- 167 (458)
+||||+||||||||||++||++++++.. + +.+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSALT-E-GLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 5899999999999999999999999864 4 479999999999999999999999999999999999999999863
Q ss_pred -hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHH
Q 012698 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAA 232 (458)
Q Consensus 168 -~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i 232 (458)
++++++++|++++||+||+||||||+++|++|+++ .|+|||||||||||++ ++++|+++
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 154 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRL 154 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999873 5789999999999999 56889999
Q ss_pred HHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012698 233 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 311 (458)
Q Consensus 233 ~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~ 311 (458)
+++|+||+ ||||||||||+|||||+++|||+ +||+|||||.||+++ +++++|++++++ ++|+|||||||+..
T Consensus 155 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-- 227 (320)
T 1pfk_A 155 RDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD-- 227 (320)
T ss_dssp HHHHHHHT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEESSSSC--
T ss_pred HHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcch--
Confidence 99999985 89999999999999999999999 899999999999987 799999999865 78999999999842
Q ss_pred hHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012698 312 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 391 (458)
Q Consensus 312 ~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G 391 (458)
+++|+++|+++++ +++|+++|||+|||++||++||.||++||.+||+++++|
T Consensus 228 ----------------------~~~la~~i~~~~~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 279 (320)
T 1pfk_A 228 ----------------------VDELAHFIEKETG------RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAG 279 (320)
T ss_dssp ----------------------HHHHHHHHHHHHS------SCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------HHHHHHHHHHHhC------CeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4578899988764 456788999999999999999999999999999999999
Q ss_pred CCceEEEEECCeEeeechhhhh-hcCCccCccHHHHHHH
Q 012698 392 YTGFTVGPVNGRHAYIPFNRIN-ERQNQVVITDRMWARV 429 (458)
Q Consensus 392 ~tg~mvgi~~~~~~~vPl~~v~-~~~k~v~~~~~~~~~~ 429 (458)
++|+||++++++++++||+++. .++|+++++...+.+.
T Consensus 280 ~~g~mv~~~~~~~~~~pl~~~~~~~~k~~~~~~~~~~~~ 318 (320)
T 1pfk_A 280 YGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKK 318 (320)
T ss_dssp CCSEEEEEETTEEEEEEHHHHHHHCCCCCCHHHHHHHHH
T ss_pred CCCEEEEEECCEEEEEEHHHHHhhCCCCCCHHHHHHHHH
Confidence 9999999999999999999999 8889998766555544
No 4
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=8.7e-82 Score=654.74 Aligned_cols=327 Identities=18% Similarity=0.266 Sum_probs=277.8
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcC--CcEEEEEcccccccccCCcccC---ChhHHhchhhcCccccccCCC
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYG--VSKILGIDGGYRGFYSKNTINL---TPKVVNDIHKRGGTILGTSRG 165 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~--~~~v~Gi~~G~~GL~~~~~~~L---~~~~v~~~~~~GGs~LGtsR~ 165 (458)
++||+|+|||||||||||+||++++++.+ ++ ..+||||++||+||+++++++| +|+++++|+++|||+|||||+
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~-~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARK-QSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHH-HCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHH-cCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCC
Confidence 46999999999999999999999999874 34 2399999999999999998877 666999999999999999997
Q ss_pred cc--------hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh-------------
Q 012698 166 GH--------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP------------- 224 (458)
Q Consensus 166 ~~--------~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~------------- 224 (458)
++ ++++++++|++++||+||+|||||||++|++|++++++++++|+|||||||||||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~ 161 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAK 161 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHH
Confidence 53 578999999999999999999999999999999999998999999999999999999
Q ss_pred -HHHHHHHHHHHhhhcCC---cEEEEEecCCcchhHHHHhhccc----CCCceEecCCCCCCccchhhHHHHHHHHHHhC
Q 012698 225 -AQRAINAAHVEAESIEN---GIGVVKLMGRYCGFIAMYATLGS----RDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 296 (458)
Q Consensus 225 -a~~ai~~i~~~A~s~~~---rv~iVEvMGR~~G~lA~~aaLA~----~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~ 296 (458)
++++|+++..++.|+++ ||||||||||+|||||+++|||+ .+||+|||||.||+++ ++++.|+++++++
T Consensus 162 ~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~~~---~~~~~i~~~~~~~ 238 (419)
T 3hno_A 162 YIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKF 238 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCCHH---HHHHHHHHHHHhC
Confidence 34566776555544444 89999999999999999999993 2899999999999987 7999999999888
Q ss_pred CcEEEEEeCCCCc---chhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCC--CCh
Q 012698 297 GHMVIVIAEGAGQ---DLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIP--SNA 371 (458)
Q Consensus 297 ~~~vVvVaEGa~~---~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~--p~a 371 (458)
+|+|||||||+.+ .++.+ ...+|++||++|++++.+|+++|+++++. ++|+++|||+|||++ ||+
T Consensus 239 ~~~iIvVaEG~~~~~g~~i~~----~~~~D~~G~~~l~gi~~~la~~i~~~~g~------~~R~~~lGh~QRgg~p~ps~ 308 (419)
T 3hno_A 239 GYCSVVVSEGVKGDDGKFLSD----QGVRDAFGHAQLGGVAPVVASMVKEGLGL------KYHWGVADYLQRAARHIASK 308 (419)
T ss_dssp SCEEEEEETTCCCSSSCC-------------------CCSHHHHHHHHHHHHCC------CEEEEECTHHHHSCGGGCBH
T ss_pred CCEEEEEeCCCcccCCcchhc----ccccccccCcccCcHHHHHHHHHHHHhCC------ceEEcccchhhccCCCCCCH
Confidence 9999999999875 33322 24589999999999999999999999863 467889999999999 899
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------eEeeechhhhhhcCCccCc------------cHHHHHHHHH
Q 012698 372 SDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINERQNQVVI------------TDRMWARVLS 431 (458)
Q Consensus 372 ~Dr~~a~~lG~~Av~~~~~G~tg~mvgi~~~-------~~~~vPl~~v~~~~k~v~~------------~~~~~~~~l~ 431 (458)
+||++|++||.+||+++++|++|+||+++++ ++..+||+++++.+|+|++ +...|.+.|-
T Consensus 309 ~Dr~la~~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~~k~v~~~~i~~~g~~vt~~~~~y~~pli 387 (419)
T 3hno_A 309 TDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEKMMPENFITEDGFGITDLCREYLAPLI 387 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSCCCCCCGGGBCTTSSSBCHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcccCCCCHHHHhhccCCccHHHHHHHHHHh
Confidence 9999999999999999999999999999986 6999999999998887764 3557777665
No 5
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-82 Score=693.57 Aligned_cols=386 Identities=17% Similarity=0.197 Sum_probs=332.8
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHhccCC-----CCcchhhhcCC--------C-c
Q 012698 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGP--------R-Q 83 (458)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~--------~-~ 83 (458)
++++||.+|++.++++|.+++.+++|++++.|+++++..++.|.+++. +++| +|+++|.+++. + .
T Consensus 306 lG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~ 384 (787)
T 3o8o_A 306 QGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIE-NKDFDKAISLRDTEFIELYENFLSTTVKDDG 384 (787)
T ss_dssp HHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHTSCTTHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhh-cCCHHHHHhccCHHHHHHHHHHHHhccCCCc
Confidence 578999999999999999999999999999999999999999999998 8888 79999999861 1 1
Q ss_pred ccccC-CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccc-cCCcccCChhHHhchhhcCccccc
Q 012698 84 KVYFV-SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIHKRGGTILG 161 (458)
Q Consensus 84 ~~~~~-~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~v~~~~~~GGs~LG 161 (458)
+...+ .+.+||||+|||||||||||+||++|+++.. .+++||||++||+||+ ++++++|+|.+|++|+++|||+||
T Consensus 385 ~~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~LG 462 (787)
T 3o8o_A 385 SELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLS--HGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIG 462 (787)
T ss_dssp CSCCCSSCCCEEEEEEESSCCSSHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTTC
T ss_pred cccCCcccCcEEEEEccCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCceec
Confidence 11122 3458999999999999999999999998864 3579999999999999 899999999999999999999999
Q ss_pred cCCCcc--hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC-CCeeEeeecccccCchh--------------
Q 012698 162 TSRGGH--DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVAVAGIPKTIDNDIP-------------- 224 (458)
Q Consensus 162 tsR~~~--~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~-~~i~vvgIPkTIDNDi~-------------- 224 (458)
|+|+.+ ++++++++|++++||+||+|||||||++|.+|++++.+++ ++|+||||||||||||+
T Consensus 463 TsR~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~~ 542 (787)
T 3o8o_A 463 TNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNA 542 (787)
T ss_dssp CBCCCGGGCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHHH
Confidence 999853 7899999999999999999999999999999998765553 57899999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-----CCcE
Q 012698 225 AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-----NGHM 299 (458)
Q Consensus 225 a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-----~~~~ 299 (458)
++++|++++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.+++++++++. +.+.
T Consensus 543 ~~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~iliPE~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~ 621 (787)
T 3o8o_A 543 LVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNGK 621 (787)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTT-TCSEEECSSSCCCHHHHHHHHHHHHHHHHHCCSCSSCCE
T ss_pred HHHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCce
Confidence 5678999999998877899999999999999999999999 899999999999999554445555555541 2358
Q ss_pred EEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHH
Q 012698 300 VIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTL 379 (458)
Q Consensus 300 vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~ 379 (458)
+|+++||+...+. +++|+++|+++++. .+++|..+|||+||||.||++||++|++
T Consensus 622 iivvaEg~~~~~~---------------------~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR~lAtr 676 (787)
T 3o8o_A 622 LLVRNEQASSVYS---------------------TQLLADIISEASKG----KFGVRTAIPGHVQQGGVPSSKDRVTASR 676 (787)
T ss_dssp EEEEETTSCSSSC---------------------HHHHHHHHHHHHTT----SSEEEEEBCGGGGGCSSCCHHHHHHHHH
T ss_pred EEEEeCCccCCCC---------------------HHHHHHHHHHHhCC----CceeEEecccccccCCCCCHHHHHHHHH
Confidence 9999999865332 46788888887531 2567888999999999999999999999
Q ss_pred HHHHHHHHHHcCC---------------------------------CceEEEEECCeEeeechhhhhhcCCc---cCccH
Q 012698 380 LAQSAVHGAVAGY---------------------------------TGFTVGPVNGRHAYIPFNRINERQNQ---VVITD 423 (458)
Q Consensus 380 lG~~Av~~~~~G~---------------------------------tg~mvgi~~~~~~~vPl~~v~~~~k~---v~~~~ 423 (458)
||.+||+++++|. +++|+|+++++++++||.++.+.... -.|+.
T Consensus 677 ~G~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~~~d~~~r~~~~ 756 (787)
T 3o8o_A 677 FAVKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWENETNVELRKGFE 756 (787)
T ss_dssp HHHHHHHHHHHHHHTCC--------------------------CGGGEEEEEEETTEEEEEEHHHHTTSBCTTTTCSBSC
T ss_pred HHHHHHHHHHhCcccccccccccccccccccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhhccchhhCCCcC
Confidence 9999999999866 68999999999999999998753222 22677
Q ss_pred HHHHHHHHh
Q 012698 424 RMWARVLSS 432 (458)
Q Consensus 424 ~~~~~~l~~ 432 (458)
.||..+...
T Consensus 757 ~~w~~~~~~ 765 (787)
T 3o8o_A 757 VHWAEYNKI 765 (787)
T ss_dssp CCCHHHHHH
T ss_pred hHHHhHHHH
Confidence 788776554
No 6
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=2.7e-82 Score=695.46 Aligned_cols=385 Identities=19% Similarity=0.255 Sum_probs=335.3
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHhccCC-----CCcchhhhcC--------CCcc
Q 012698 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG--------PRQK 84 (458)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~--------~~~~ 84 (458)
++.+||.++++.+|+++.+++.+++|++++.|++++++.++.|..+++ +++| +|+.+|.+++ ++..
T Consensus 316 lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~-~~~~~~a~~~rg~~f~~~~~~~~~~~~~~~~ 394 (762)
T 3o8l_A 316 MGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMD-EKRFDEAMKLRGRSFMNNWEVYKLLAHIRPP 394 (762)
T ss_dssp HHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHH-SSCHHHHHHHHCTHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhc-cchHHHHHHhhCchHHHHHHHHHHhcCCCCc
Confidence 568999999999999999999999999999999999999999999887 6776 5888998765 1111
Q ss_pred cccCCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCC
Q 012698 85 VYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR 164 (458)
Q Consensus 85 ~~~~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR 164 (458)
.. ..+++||||+||||||||||++||++|+++.. .+.+||||++||+||+++++++|+|++|++|+++|||+|||+|
T Consensus 395 ~~-~~~~~~IgIltsGGdapGmNaaIravv~~~~~--~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTsR 471 (762)
T 3o8l_A 395 AP-KSGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI--QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSKR 471 (762)
T ss_dssp CC-CSSCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEEC
T ss_pred cc-cccCCEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecCC
Confidence 11 14568999999999999999999999999863 3579999999999999999999999999999999999999999
Q ss_pred Cc--chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC-CCeeEeeecccccCchh--------------HHH
Q 012698 165 GG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVAVAGIPKTIDNDIP--------------AQR 227 (458)
Q Consensus 165 ~~--~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~-~~i~vvgIPkTIDNDi~--------------a~~ 227 (458)
+. +++++++++|++++||+||+|||||||++|++|+++++++. ++|+|||||||||||++ +++
T Consensus 472 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~~ 551 (762)
T 3o8l_A 472 TLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICT 551 (762)
T ss_dssp CCSGGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHHH
Confidence 85 47999999999999999999999999999999999988774 68999999999999999 568
Q ss_pred HHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhC-CcEEEEEeCC
Q 012698 228 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEG 306 (458)
Q Consensus 228 ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~-~~~vVvVaEG 306 (458)
+|++++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++++.+.++++.+|++++ +++|||||||
T Consensus 552 aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~-gad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaEg 630 (762)
T 3o8l_A 552 TCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEK 630 (762)
T ss_dssp HHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHT-TCSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEETT
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 8999999998777899999999999999999999999 8999999999999997666777777887664 7899999999
Q ss_pred CCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHH
Q 012698 307 AGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVH 386 (458)
Q Consensus 307 a~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~ 386 (458)
+...+. ++++++.++++.. ..+++|..+|||+||||.|+++||++|++||.+||+
T Consensus 631 a~~~~~---------------------~~~~~~~~~~~~~----~~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~ 685 (762)
T 3o8l_A 631 CNENYT---------------------TDFIFNLYSEEGK----GIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMN 685 (762)
T ss_dssp SCSSSC---------------------HHHHHHHHHHHTT----TTCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCccch---------------------HHHHHHHHHhhcc----CCceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHH
Confidence 976543 2356666665411 135678889999999999999999999999999999
Q ss_pred HHHcC---------------CCceEEEEECCeEeeechhhhhhcC--CccCccHHHHHHHHHh
Q 012698 387 GAVAG---------------YTGFTVGPVNGRHAYIPFNRINERQ--NQVVITDRMWARVLSS 432 (458)
Q Consensus 387 ~~~~G---------------~tg~mvgi~~~~~~~vPl~~v~~~~--k~v~~~~~~~~~~l~~ 432 (458)
++++| .+++|||+++++++++||+++.... ..--|+..||.++...
T Consensus 686 ~l~~g~~~~~~~g~~~~~~~~~~~~vg~~~~~i~~~pl~e~~~~~d~~~r~~~~~~w~~~~~~ 748 (762)
T 3o8l_A 686 WMAGKIKESYRNGRIFANTPDSGCVLGMRKRALVFQPVTELQNQTDFEHRIPKEQWWLKLRPI 748 (762)
T ss_dssp HHHHHHHTTBCSSSBCCCSSTTEEEEEEETTEEEEEEHHHHGGGEETTTTEESSCGGGGTHHH
T ss_pred HHHhCccccccccccccccCCceEEEEEECCEEEEEEHHHHhhccchhhcCCCCchHHhHHHH
Confidence 99987 7999999999999999999987642 1122677899766543
No 7
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=7.1e-81 Score=628.86 Aligned_cols=296 Identities=29% Similarity=0.406 Sum_probs=269.8
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-----
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG----- 166 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~----- 166 (458)
+|||||||||||||||++||++++++.+ .+.+||||++||+||+++++++|+|+++++|+++|||+|||||++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~~--~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAIY--HDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 4899999999999999999999998863 457999999999999999999999999999999999999999985
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------------HHHHHHHH
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAA 232 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------------a~~ai~~i 232 (458)
+++++++++|++++||+||+|||||||++|++|+++ .++|||||||||||++ ++++|+++
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~i 153 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999863 4789999999999999 56889999
Q ss_pred HHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012698 233 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 311 (458)
Q Consensus 233 ~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vVvVaEGa~~~~ 311 (458)
+++|+|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+...
T Consensus 154 ~~~a~s~-~rv~ivEvMGR~aG~lA~~a~la~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~iivvaEG~~~~- 227 (319)
T 4a3s_A 154 RDTATSH-ERTYVIEVMGRHAGDIALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVGSG- 227 (319)
T ss_dssp HHHHHHH-TCEEEEEECCTTCCHHHHHHHHHH-TCSEEEBTTBCCCHH---HHHHHHHHHHTTTCCCEEEEEETTTCCH-
T ss_pred Hhhhhcc-CCeEEEEeCCcchhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHcCCCceEEEEECCCCcc-
Confidence 9999886 589999999999999999999999 899999999999988 799999988877 689999999999652
Q ss_pred hHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012698 312 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 391 (458)
Q Consensus 312 ~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G 391 (458)
..+++.++++++ +++|+.+|||+|||++||++||.+|++||.+||+++++|
T Consensus 228 -----------------------~~~~~~~~~~~g------~~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G 278 (319)
T 4a3s_A 228 -----------------------VEFGKRIEEETN------LETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEG 278 (319)
T ss_dssp -----------------------HHHHHHHHHHHC------CCEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred -----------------------hHHHHHHHHhCC------ceEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 356677777765 346788999999999999999999999999999999999
Q ss_pred CCceEEEEECCeEeeechhhhhhcCCccCccHHHHHHHH
Q 012698 392 YTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVL 430 (458)
Q Consensus 392 ~tg~mvgi~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~l 430 (458)
+||+||++++++++++||+++++.+|+|+++.....+.|
T Consensus 279 ~~g~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~a~~l 317 (319)
T 4a3s_A 279 KGGRCVGIQNNKLVDHDIIEILETKHTVEQNMYQLSKEL 317 (319)
T ss_dssp CCSEEEEEETTEEEEEEHHHHSSSCCCCCHHHHHHHHHH
T ss_pred CCCeEEEEECCEEEEEeHHHHHhccCCCCHHHHHHHHhc
Confidence 999999999999999999999999999998765555544
No 8
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-82 Score=694.58 Aligned_cols=385 Identities=19% Similarity=0.206 Sum_probs=331.5
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHhccCC-----CCcchhhhcCC--------C-c
Q 012698 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGP--------R-Q 83 (458)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~--------~-~ 83 (458)
++++||.+|++.++++|.+++.+++|++++.|+++++..++.|.++++ +|+| +|+++|.+++. + .
T Consensus 306 ~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~ 384 (766)
T 3o8o_B 306 QGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQ-AKDFKRAMSLRDTEFIEHLNNFMAINSADHN 384 (766)
T ss_dssp HHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHHSCTTHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHh-cCCHHHHHHccCHHHHHHHHHHHHhccCCcc
Confidence 578999999999999999999999999999999999999999999998 8998 69999999861 1 1
Q ss_pred ccccC-CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc-CCcccCChhHHhchhhcCccccc
Q 012698 84 KVYFV-SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS-KNTINLTPKVVNDIHKRGGTILG 161 (458)
Q Consensus 84 ~~~~~-~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~-~~~~~L~~~~v~~~~~~GGs~LG 161 (458)
+...+ .+.+||||+|||||||||||+||++|+++.. + +.+||||++||+||++ +++.+|+|++|++|+++|||+||
T Consensus 385 ~~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~LG 462 (766)
T 3o8o_B 385 EPKLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMS-Q-GHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIG 462 (766)
T ss_dssp TTCSSSSCCCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTTC
T ss_pred cccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceEc
Confidence 11112 2357999999999999999999999998864 3 4799999999999997 78999999999999999999999
Q ss_pred cCCCc---chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC-CCeeEeeecccccCchh-------------
Q 012698 162 TSRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVAVAGIPKTIDNDIP------------- 224 (458)
Q Consensus 162 tsR~~---~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~-~~i~vvgIPkTIDNDi~------------- 224 (458)
|+|+. .++++++++|++++||+||+|||||||++|++|+++++++. ++|+|||||||||||++
T Consensus 463 TsR~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~~ 542 (766)
T 3o8o_B 463 TNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALN 542 (766)
T ss_dssp CCCCCGGGGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHHH
T ss_pred cCCCCCccchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHHH
Confidence 99984 36899999999999999999999999999999998654442 57899999999999999
Q ss_pred -HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHH--h---CCc
Q 012698 225 -AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLK--E---NGH 298 (458)
Q Consensus 225 -a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~--~---~~~ 298 (458)
++++|++++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.+++++++++ + +.+
T Consensus 543 ~~~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~ilIPE~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 621 (766)
T 3o8o_B 543 ALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFG 621 (766)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhccCCCc
Confidence 5679999999998877899999999999999999999999 89999999999999954444555555554 1 356
Q ss_pred EEEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHH
Q 012698 299 MVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCT 378 (458)
Q Consensus 299 ~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~ 378 (458)
.+|+++||+...+. +++|+++|+++.+. .+++|..+|||+||||.||++||++|+
T Consensus 622 ~iivvaEg~~~~~~---------------------~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR~lAt 676 (766)
T 3o8o_B 622 KLILKSTNASKALS---------------------ATKLAEVITAEADG----RFDAKPAYPGHVQQGGLPSPIDRTRAT 676 (766)
T ss_dssp EEEEEEGGGCSSCC---------------------HHHHHHHHHHHHTT----SCEEEEEBCGGGGGCSSCCHHHHHHHH
T ss_pred eEEEEeCCcCCCCc---------------------HHHHHHHHHHHhCC----CceEEEecccccccCCCCCHHHHHHHH
Confidence 89999999864332 46788888877531 256788999999999999999999999
Q ss_pred HHHHHHHHHHHcCC----------------------CceEEEEECCeEeeechhhhhhcCC---ccCccHHHHHHHHH
Q 012698 379 LLAQSAVHGAVAGY----------------------TGFTVGPVNGRHAYIPFNRINERQN---QVVITDRMWARVLS 431 (458)
Q Consensus 379 ~lG~~Av~~~~~G~----------------------tg~mvgi~~~~~~~vPl~~v~~~~k---~v~~~~~~~~~~l~ 431 (458)
+||.+||+++++|+ +++|||+++++++++||+++.+... .-.|+..||..+..
T Consensus 677 r~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~~~~~~~~d~~~r~~~~~~w~~~~~ 754 (766)
T 3o8o_B 677 RMAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQATRL 754 (766)
T ss_dssp HHHHHHHHHHHHTSHHHHHHSSSSSTTCCCCHHHHTTSEEEECSSSCCEEEEHHHHHHHTBCGGGSSBSSCSCHHHHH
T ss_pred HHHHHHHHHHHhCCcccccccccccccccccccCCCceEEEEEECCEEEEEeHHHHHhhccchhhCCCCChhHHhHHH
Confidence 99999999999999 8999999999999999999875322 22266778877654
No 9
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.8e-82 Score=701.75 Aligned_cols=385 Identities=17% Similarity=0.200 Sum_probs=331.3
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHhccCC-----CCcchhhhcCC--------C-c
Q 012698 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGP--------R-Q 83 (458)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~--------~-~ 83 (458)
++++||.++++.++++|.+++.+.+|++++.|+++++..++.|.++|. +|+| +|+++|.+++. + .
T Consensus 484 lG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~-~~~f~~a~~lr~~~f~~~~~~~~~~~~~~~~ 562 (941)
T 3opy_B 484 QGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIE-SRNFKKAISLRDSEFVEHMKNFISTNSADHV 562 (941)
T ss_dssp HHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHHSCHHHHHHHHHHHHHHC-CCS
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHh-cCCHHHHHHccCHHHHHHHHHHHHhccCCCc
Confidence 679999999999999999999999999999999999999999999998 8998 69999999861 1 1
Q ss_pred cccc-CCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccc-cCCcccCChhHHhchhhcCccccc
Q 012698 84 KVYF-VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIHKRGGTILG 161 (458)
Q Consensus 84 ~~~~-~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~v~~~~~~GGs~LG 161 (458)
+... +.+++||||+|||||||||||+||++|+++.. .+.+||||++||+||+ ++++++|+|.+|++|+++|||+||
T Consensus 563 ~~~~~~~~~~rIgIltsGGdapGmNaaIravv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiLG 640 (941)
T 3opy_B 563 PPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS--RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEIG 640 (941)
T ss_dssp CCSSCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSSC
T ss_pred cccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEec
Confidence 1111 23468999999999999999999999998864 3579999999999999 799999999999999999999999
Q ss_pred cCCCcc---hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCCeeEeeecccccCchh-------------
Q 012698 162 TSRGGH---DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIP------------- 224 (458)
Q Consensus 162 tsR~~~---~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~------------- 224 (458)
|+|+.+ ++++++++|++++||+||+|||||||++|.+|+++++++ .++|+|||||||||||++
T Consensus 641 TsR~~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~ 720 (941)
T 3opy_B 641 TNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLN 720 (941)
T ss_dssp EECCCTTTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHH
T ss_pred cCCCCcccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHHH
Confidence 999743 689999999999999999999999999999999876544 257899999999999999
Q ss_pred -HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-----CCc
Q 012698 225 -AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-----NGH 298 (458)
Q Consensus 225 -a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-----~~~ 298 (458)
++++|++++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.+++++++++. +.+
T Consensus 721 ~i~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~-GAd~ilIPE~~~~l~~l~~~i~~l~~~~~~~~g~~~~~ 799 (941)
T 3opy_B 721 SFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSG 799 (941)
T ss_dssp HHHHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHTCTTSCCCC
T ss_pred HHHHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 5678999999998877899999999999999999999999 899999999999999655555556666642 245
Q ss_pred EEEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHH
Q 012698 299 MVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCT 378 (458)
Q Consensus 299 ~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~ 378 (458)
.+|+||||+...+. +++|++.|+++++. .+++|..+|||+||||.||++||++|+
T Consensus 800 ~iIvvaEga~~~~~---------------------~~~la~~i~~~~~~----g~e~R~tvLGHiQRGG~Psa~DRilAt 854 (941)
T 3opy_B 800 RLILKSENASKVLT---------------------TEVISTIIDDEASG----RFDSKTAIPGHVQQGGIPSPMDRVRAS 854 (941)
T ss_dssp EEEEEEGGGCSSSC---------------------HHHHHHHHHHHHTT----SSEEEEECCCTTTTCSSCCHHHHHHHH
T ss_pred eEEEEeCCccCCCC---------------------HHHHHHHHHHHhCC----CceeEEccccccccCCCCCHHHHHHHH
Confidence 89999999865332 45788888887531 256788999999999999999999999
Q ss_pred HHHHHHHHHHHcCC--------------------CceEEEEECCeEeeechhhhhhcCCc---cCccHHHHHHHHH
Q 012698 379 LLAQSAVHGAVAGY--------------------TGFTVGPVNGRHAYIPFNRINERQNQ---VVITDRMWARVLS 431 (458)
Q Consensus 379 ~lG~~Av~~~~~G~--------------------tg~mvgi~~~~~~~vPl~~v~~~~k~---v~~~~~~~~~~l~ 431 (458)
+||.+||+++++|+ +++|||+++++++++||+++.+.... -.|+..||..+..
T Consensus 855 r~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~e~~~~~~d~~~r~p~~~~w~~~~~ 930 (941)
T 3opy_B 855 RFAIRAVSFIERHSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFTPIRQLYDFESDVPRRMRKNIFWSNVRE 930 (941)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCCCCCHHHHTTEEEEEECC-CEEEEEHHHHHHTSCCTTTTCC-CCSTHHHHH
T ss_pred HHHHHHHHHHHhCCcccccccccccccccccCCCceEEEEEECCEEEEEEHHHHHhhccchhhcCCcchHHHhHHH
Confidence 99999999999998 89999999999999999998764322 2266778887654
No 10
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=2e-80 Score=686.32 Aligned_cols=386 Identities=19% Similarity=0.223 Sum_probs=329.6
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccchhHHHHHHhccCC-----CCcchhhhcCC--------C-c
Q 012698 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGP--------R-Q 83 (458)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~--------~-~ 83 (458)
++++||.++++.+++++.+++.+.+|++++.|+++++..++.|..++. +++| +|+++|.+++. + .
T Consensus 511 lG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~-~k~f~~a~~lr~~~F~~~~~~~~~~~~~~~~ 589 (989)
T 3opy_A 511 QGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIE-AKDFDKALQLRDQEFATSYENFLSVSKYDDG 589 (989)
T ss_dssp HHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHTSCHHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhh-ccCHHHHHhccChHHHHHHHHHHHhccCCCc
Confidence 578999999999999999999999999999999999999999999998 8888 79999999861 1 1
Q ss_pred cccc-CCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccc-cCCcccCChhHHhchhhcCccccc
Q 012698 84 KVYF-VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIHKRGGTILG 161 (458)
Q Consensus 84 ~~~~-~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~v~~~~~~GGs~LG 161 (458)
+... +.+++||||+|||||||||||+||++|+++.. .+.+||||++||+||+ ++++++|+|.+|++|+++|||+||
T Consensus 590 ~~~~p~~~~~rIgIltsGGdaPGmNAaIravV~~a~~--~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiLG 667 (989)
T 3opy_A 590 SYLVPESSRLNIAIIHVGAPTSALNPATRVATLNSLA--KGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIG 667 (989)
T ss_dssp SSCCCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSSC
T ss_pred cccCCccCCceEEEEecCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEec
Confidence 1111 23468999999999999999999999998863 4579999999999999 999999999999999999999999
Q ss_pred cCCCc--chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC-CCeeEeeecccccCchh--------------
Q 012698 162 TSRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVAVAGIPKTIDNDIP-------------- 224 (458)
Q Consensus 162 tsR~~--~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~-~~i~vvgIPkTIDNDi~-------------- 224 (458)
|+|+. +++++++++|++++||+||+|||||||++|.+|++++.++. ++|+||||||||||||+
T Consensus 668 TsR~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn~ 747 (989)
T 3opy_A 668 TNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNT 747 (989)
T ss_dssp CBCCCGGGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHHH
Confidence 99985 47999999999999999999999999999999998765543 57899999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHh-----CCcE
Q 012698 225 AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-----NGHM 299 (458)
Q Consensus 225 a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-----~~~~ 299 (458)
++++|++++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.+++++++++. +.++
T Consensus 748 ~~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~-GAd~ilIPE~~f~l~~l~~~i~~l~~~~~~~~g~~~~~~ 826 (989)
T 3opy_A 748 LSGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGK 826 (989)
T ss_dssp HHHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHH-TCSCEECTTSCCCHHHHHHHHHHHHHHHTTCC---CCCE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCccce
Confidence 5678999999998877899999999999999999999999 899999999999999555555555566642 2468
Q ss_pred EEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHH
Q 012698 300 VIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTL 379 (458)
Q Consensus 300 vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~ 379 (458)
|||||||+...+. +++|+++|+++.+. .+++|..+|||+||||.|+++||++|++
T Consensus 827 IIvvaEga~~~~~---------------------~~~la~~i~e~~~~----~~e~R~tvLGHiQRGG~Psa~DRilAtr 881 (989)
T 3opy_A 827 IFIHNEKASKVYT---------------------TDLIAAIIGEAGKG----RFESRTAVPGHVQQGKSPSSIDRVNACR 881 (989)
T ss_dssp EEEEESSSCSSSC---------------------HHHHHHHHHHTTTT----TSCEEEECCGGGGGCSSCCHHHHHHHHH
T ss_pred EEEEeCCCcCCCC---------------------HHHHHHHHHHhcCC----CceeEecccccccCCCCCCHHHHHHHHH
Confidence 9999999865432 45789999887531 2567889999999999999999999999
Q ss_pred HHHHHHHHHHcCC---------------------------------------CceEEEEECCeEeeechhhhhhcCCc--
Q 012698 380 LAQSAVHGAVAGY---------------------------------------TGFTVGPVNGRHAYIPFNRINERQNQ-- 418 (458)
Q Consensus 380 lG~~Av~~~~~G~---------------------------------------tg~mvgi~~~~~~~vPl~~v~~~~k~-- 418 (458)
||.+||++++++. +.+++|++++++.+.|+.++......
T Consensus 882 ~G~~Ave~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~~~~d~~ 961 (989)
T 3opy_A 882 LAIKCCNFIEDANFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHHK 961 (989)
T ss_dssp HHHHHHHHHTCGGGSCCSBSCCCHHHHHHTEEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHHHSCTTT
T ss_pred HHHHHHHHHHccccccccccccccccccccccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhhhccchh
Confidence 9999999999865 35689999999999999998643221
Q ss_pred -cCccHHHHHHHHHh
Q 012698 419 -VVITDRMWARVLSS 432 (458)
Q Consensus 419 -v~~~~~~~~~~l~~ 432 (458)
-.|+..||..+...
T Consensus 962 ~r~p~~~~W~~~~~~ 976 (989)
T 3opy_A 962 WRKGKNVHWEQLNIV 976 (989)
T ss_dssp C----CCCCHHHHHH
T ss_pred hCCCcChHHHhHHHH
Confidence 22667788877553
No 11
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=1.4e-79 Score=656.52 Aligned_cols=393 Identities=23% Similarity=0.322 Sum_probs=312.8
Q ss_pred hhhCCCCCCCcCCCCCCc-ccccccccccccchhHHHHHHhccCCC-----CcchhhhcCCCcccccCCCceEEEEEccC
Q 012698 27 TDYIPDLPTYPNPLQFNA-AYSVVKQYFVNVDDTVSQKIVVHKDSP-----RGTHFRRAGPRQKVYFVSDEVHACIVTCG 100 (458)
Q Consensus 27 ~~~~p~~p~~~~~l~~n~-~~~~~~~~~v~~t~~v~~~~~~~~~~~-----~~~~f~~~~~~~~~~~~~~~~~iaIltsG 100 (458)
++|.|.+|+. |++.. .++ ....+.++.+...-++.+.|+ +...|.++.++. -.++.+||||+|||
T Consensus 11 ~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~---~~~~~~~igIltsG 81 (555)
T 2f48_A 11 QKYIPKLPNI---LKKDFNNIS---LVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSL---SFSKALNIGIILSG 81 (555)
T ss_dssp TTCCCCCCGG---GGSCGGGEE---EEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCCCC---SCCSCCEEEEEEBS
T ss_pred hcCCCCCCHH---HhCCcccee---eecCCcccCccCHHHHHHhCccccCCCcEEEecCCccc---ccCCCcEEEEECcC
Confidence 3688999986 55410 111 223333333333222233342 445677654431 13456899999999
Q ss_pred CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCc-cccccCCCcc----hHHHHHHH
Q 012698 101 GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGG-TILGTSRGGH----DTSKIVDS 175 (458)
Q Consensus 101 G~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GG-s~LGtsR~~~----~~~~i~~~ 175 (458)
||||||||+||++++++...+++.+||||++||+||+++++++|+|++|++|+++|| |+|||+|++. ++++++++
T Consensus 82 GdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~ 161 (555)
T 2f48_A 82 GPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFV 161 (555)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHH
T ss_pred CCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHH
Confidence 999999999999999976567888999999999999999999999999999999999 7999999853 58899999
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh----------------HHHHHHHHHHHhhhc
Q 012698 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------------AQRAINAAHVEAESI 239 (458)
Q Consensus 176 l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~----------------a~~ai~~i~~~A~s~ 239 (458)
|++++||+||+||||||+++|++|++++.+++++|+|||||||||||++ ++++|++++.||.|+
T Consensus 162 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~s~ 241 (555)
T 2f48_A 162 AKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMST 241 (555)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999995 568999999999998
Q ss_pred CCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCC----CCccch-hhHHHHHHHHHHh-CCcEEEEEeCCCCcc---
Q 012698 240 ENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP----FYLEGE-GGLYEFIEKRLKE-NGHMVIVIAEGAGQD--- 310 (458)
Q Consensus 240 ~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~----~~l~~~-~~~~~~i~~r~~~-~~~~vVvVaEGa~~~--- 310 (458)
++||||||||||+|||||++||||+ +||+|||||++ ++++++ +.+++.|++|.++ ++|+|||||||+.+.
T Consensus 242 ~~rv~iVEvMGR~aG~lAl~a~LA~-gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~~~~~~ 320 (555)
T 2f48_A 242 KKYWHFVKLMGRSASHVALECALKT-HPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPE 320 (555)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH-CCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTSHH
T ss_pred CCcEEEEEeCCcCHHHHHHHHHhhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCccccch
Confidence 8899999999999999999999999 89999999986 565533 4566777766655 689999999999531
Q ss_pred ---hhH-----------------------------------------HHHhhh-----ccccccCCccccch--HHHHHH
Q 012698 311 ---LLA-----------------------------------------ESLQSM-----NQQDASGNKLLQDV--GLWISH 339 (458)
Q Consensus 311 ---~~~-----------------------------------------~~~~~~-----~~~D~~G~~~l~~i--~~~L~~ 339 (458)
++. +.+... ..+|++||++|+++ +.+|++
T Consensus 321 ~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~~~L~~ 400 (555)
T 2f48_A 321 VKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIE 400 (555)
T ss_dssp HHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccccHHHHHHH
Confidence 000 011110 25799999999988 556666
Q ss_pred HHHHhhcccce-----eeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------Eeee
Q 012698 340 KIKDHFARLHK-----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR-------HAYI 407 (458)
Q Consensus 340 ~I~e~~~~~~~-----~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mvgi~~~~-------~~~v 407 (458)
+|+++++.+.+ ..++.+...|||+|||+.||++||.||++||..||+++++|+||+||++++++ +..+
T Consensus 401 ~v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w~~~~v 480 (555)
T 2f48_A 401 MIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGV 480 (555)
T ss_dssp HHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEEE
T ss_pred HHHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccceEEEee
Confidence 66555442211 12566777899999999999999999999999999999999999999999976 8899
Q ss_pred chhhhhhcC------------CccCccHHHHHHH
Q 012698 408 PFNRINERQ------------NQVVITDRMWARV 429 (458)
Q Consensus 408 Pl~~v~~~~------------k~v~~~~~~~~~~ 429 (458)
||.++++.+ +.||.++..|..+
T Consensus 481 Pl~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~ 514 (555)
T 2f48_A 481 PLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEF 514 (555)
T ss_dssp EGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHH
T ss_pred eHHHHhhhhhhcCccccceeeeeeCCCCHHHHHH
Confidence 999988754 3466666666543
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=5.6e-77 Score=653.46 Aligned_cols=329 Identities=22% Similarity=0.343 Sum_probs=294.3
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CcccCChhHHhchhhcCccccccCCCcc
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGtsR~~~ 167 (458)
+.+||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 14 ~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~ 91 (762)
T 3o8l_A 14 VGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKD 91 (762)
T ss_dssp SSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCG
T ss_pred cCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCc
Confidence 35799999999999999999999999885 4568999999999999999 8999999999999999999999999863
Q ss_pred -----hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHH-----------------HHHcCCCeeEeeecccccCchh-
Q 012698 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-----------------IRQRGLKVAVAGIPKTIDNDIP- 224 (458)
Q Consensus 168 -----~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~-----------------~~~~~~~i~vvgIPkTIDNDi~- 224 (458)
++++++++|++++||+||+||||||+++|+.|+++ +.+++.+++|||||||||||++
T Consensus 92 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 92 FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp GGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 57899999999999999999999999999988653 2344678999999999999998
Q ss_pred -------------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHH
Q 012698 225 -------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEK 291 (458)
Q Consensus 225 -------------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~ 291 (458)
++++|++++++|.|| +|+||||||||+|||||+++|||+ +||+|||||.||+++.++.+++.|++
T Consensus 172 TD~TiGfdTA~~~i~eaid~i~~tA~Sh-~Rv~iVEvMGR~aG~LAl~aglA~-gad~ilIPE~p~~~~~~~~~~~~i~~ 249 (762)
T 3o8l_A 172 TDMTIGTDSALHRITEIVDAITTTAQSH-QRTFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSE 249 (762)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHTTCCSS-CCEEEEEECCSSCCHHHHHHHHHH-TCSBCCCTTSCCCSSCHHHHHHHHHH
T ss_pred CcCCcCchhHHHHHHHHHHHHHHhhhcC-ccEEEEEeCCcchhHHHHHHHHhc-CCCEEEecCCCCCcchHHHHHHHHHH
Confidence 568999999999986 579999999999999999999999 89999999999999777789999998
Q ss_pred HHHh-CCcEEEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCC
Q 012698 292 RLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSN 370 (458)
Q Consensus 292 r~~~-~~~~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~ 370 (458)
+.++ ++|+|||||||+. |++|++.. +++|++.|+++++. ++|..+|||+|||++||
T Consensus 250 ~~~~gk~~~iVvVaEGa~--------------d~~G~~i~---~~~l~~~i~~~~g~------~~R~tvLGh~QRgg~Ps 306 (762)
T 3o8l_A 250 TRTRGSRLNIIIVAEGAI--------------DRNGKPIT---SEGVKDLVVRRLGY------DTRVTVLGHVQRGGTPS 306 (762)
T ss_dssp HHHTTCSCCBBCEETTCC--------------CSSSCCCC---HHHHHHHHHHHTCC------CEEEECCCSSTTCSCCC
T ss_pred HHHcCCCceEEEEeCCcc--------------CCCCCCcH---HHHHHHHHHHHhCC------CcceeecCccccCCCCC
Confidence 7765 5789999999984 56677654 56899999988763 45678999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHcCC---CceEEEEECCeEeeechhhhhhcCCccCc--cHHHHHHHHHhcCCCCCCChHHHH
Q 012698 371 ASDNVYCTLLAQSAVHGAVAGY---TGFTVGPVNGRHAYIPFNRINERQNQVVI--TDRMWARVLSSTNQPSFLSANELA 445 (458)
Q Consensus 371 a~Dr~~a~~lG~~Av~~~~~G~---tg~mvgi~~~~~~~vPl~~v~~~~k~v~~--~~~~~~~~l~~tgqp~~~~~~~~~ 445 (458)
++||++|++||.+||+++++|+ +++||++++++++++||.+++..+|.|++ +...|.+.+..+|+ +|..+.+++
T Consensus 307 a~Dr~lat~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~~~~~~~a~~~rg~-~f~~~~~~~ 385 (762)
T 3o8l_A 307 AFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEKRFDEAMKLRGR-SFMNNWEVY 385 (762)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHSSCHHHHHHHHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhccchHHHHHHhhCc-hHHHHHHHH
Confidence 9999999999999999999999 89999999999999999999999999886 46689999999996 587766555
Q ss_pred H
Q 012698 446 K 446 (458)
Q Consensus 446 ~ 446 (458)
+
T Consensus 386 ~ 386 (762)
T 3o8l_A 386 K 386 (762)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-74 Score=633.40 Aligned_cols=328 Identities=21% Similarity=0.304 Sum_probs=283.0
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC---cccCChhHHhchhhcCccccccCCCcc
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN---TINLTPKVVNDIHKRGGTILGTSRGGH 167 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~v~~~~~~GGs~LGtsR~~~ 167 (458)
++||||+|||||||||||+||++|+++.. + +.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|+++
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF-K-GCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 46999999999999999999999999864 4 469999999999999986 679999999999999999999999863
Q ss_pred -----hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHH-----------------HHHcCCCeeEeeecccccCchh-
Q 012698 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-----------------IRQRGLKVAVAGIPKTIDNDIP- 224 (458)
Q Consensus 168 -----~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~-----------------~~~~~~~i~vvgIPkTIDNDi~- 224 (458)
++.+++++|++++||+||+|||||||++|++|+++ ..+++..++|||||||||||++
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 36789999999999999999999999999988653 3344667899999999999998
Q ss_pred -------------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccch-hhHHHHHH
Q 012698 225 -------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-GGLYEFIE 290 (458)
Q Consensus 225 -------------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~-~~~~~~i~ 290 (458)
++++|++++++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++++ +++.+.++
T Consensus 161 TD~TiGfdTA~~~i~eaid~i~~tA~Sh-~RvfvVEvMGR~aG~LAl~aglA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 238 (766)
T 3o8o_B 161 TDATIGAYSALDRICKAIDYVEATANSH-SRAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVS 238 (766)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTCCCCTTHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhc-CCCEEEccCCCCChHHHHHHHHHHHH
Confidence 567899999999986 589999999999999999999999 89999999999999743 33445555
Q ss_pred HHHHh-CCcEEEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCC
Q 012698 291 KRLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPS 369 (458)
Q Consensus 291 ~r~~~-~~~~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p 369 (458)
++.++ ++|+|||||||+.+.. |+.. .+.+|++.|+++++ +++|..+|||+|||++|
T Consensus 239 ~~~~~gk~~~IVvVaEGa~~~~--------------~~~~---~~~~l~~~i~~~~g------~~~R~tvLGh~QRGG~P 295 (766)
T 3o8o_B 239 KHRSRGKRTTIVVVAEGAIAAD--------------LTPI---SPSDVHKVLVDRLG------LDTRITTLGHVQRGGTA 295 (766)
T ss_dssp HHHHTTCCCEEEEEETTCBCTT--------------SCBC---CHHHHHHHHHHTTC------CCEEEEECGGGGTCSCC
T ss_pred HHHhcCCCceEEEEeCCccccc--------------CCcc---hHHHHHHHHHHHhC------CceeEcccChhhcCCCC
Confidence 54433 5799999999996532 2211 15688888888765 34677889999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEeeechhhhhhcCCccCc--cHHHHHHHHHhcCCCCCCChHHH
Q 012698 370 NASDNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVVI--TDRMWARVLSSTNQPSFLSANEL 444 (458)
Q Consensus 370 ~a~Dr~~a~~lG~~Av~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~k~v~~--~~~~~~~~l~~tgqp~~~~~~~~ 444 (458)
+++||++|++||.+||+++++|++ |+||++++++++.+||++++.+.|.|+. +...|.+.+...| ++|..+.+.
T Consensus 296 sa~DR~lAt~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~-~~f~~~~~~ 374 (766)
T 3o8o_B 296 VAYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQAKDFKRAMSLRD-TEFIEHLNN 374 (766)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHSC-TTHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHhcCCHHHHHHccC-HHHHHHHHH
Confidence 999999999999999999999997 8999999999999999999998888763 4667888888877 899888777
Q ss_pred HH
Q 012698 445 AK 446 (458)
Q Consensus 445 ~~ 446 (458)
++
T Consensus 375 ~~ 376 (766)
T 3o8o_B 375 FM 376 (766)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 14
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-74 Score=633.38 Aligned_cols=329 Identities=22% Similarity=0.327 Sum_probs=281.8
Q ss_pred CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CcccCChhHHhchhhcCccccccCCCc
Q 012698 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGG 166 (458)
Q Consensus 89 ~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGtsR~~ 166 (458)
.+++||||+||||||||||++||++|+++.. .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|++
T Consensus 3 ~~~krIgIltsGGdaPGmNaaIravvr~a~~--~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~ 80 (787)
T 3o8o_A 3 QKKKKIAVMTSGGDSPGMNAAVRAVVRTGIH--FGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSM 80 (787)
T ss_dssp --CCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCS
T ss_pred CCCcEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCC
Confidence 3457999999999999999999999999863 457999999999999998 689999999999999999999999986
Q ss_pred c-----hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHH-------H----------HHcCCCeeEeeecccccCchh
Q 012698 167 H-----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-------I----------RQRGLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 167 ~-----~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~-------~----------~~~~~~i~vvgIPkTIDNDi~ 224 (458)
+ .+.+++++|++++||+||+|||||||++|++|+++ + .+++..++|||||||||||++
T Consensus 81 ~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~ 160 (787)
T 3o8o_A 81 EFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMS 160 (787)
T ss_dssp GGGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCC
Confidence 3 36789999999999999999999999999987642 2 223567999999999999999
Q ss_pred --------------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccch-hhHHHHH
Q 012698 225 --------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-GGLYEFI 289 (458)
Q Consensus 225 --------------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~-~~~~~~i 289 (458)
++++|++++++|.|| +||||||||||+|||||+++|||+ +||+|||||+||+++++ +++.+.+
T Consensus 161 gTD~TiGfdTAl~~i~eaid~i~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-gAd~ilIPE~p~~~~~~~~~v~~~i 238 (787)
T 3o8o_A 161 GTDSTIGAYSALERICEMVDYIDATAKSH-SRAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVC 238 (787)
T ss_dssp TSSCCEEHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHT-TCSEEECGGGCBCTTTHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhh-CCCEEEeCCCCCChHHHHHHHHHHH
Confidence 567899999999995 689999999999999999999999 89999999999999753 3455555
Q ss_pred HHHHHh-CCcEEEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCC
Q 012698 290 EKRLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIP 368 (458)
Q Consensus 290 ~~r~~~-~~~~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~ 368 (458)
+++.++ ++|+|||||||+.+.. ++.. .+..+++.|++ ++ +++|...|||+|||++
T Consensus 239 ~~~~~~gk~~~IVvVaEGa~~~~--------------~~~~---~~~~~~~~i~~-~g------~~~R~tvLGh~QRGG~ 294 (787)
T 3o8o_A 239 QRHRSKGRRNNTIIVAEGALDDQ--------------LNPV---TANDVKDALIE-LG------LDTKVTILGHVQRGGT 294 (787)
T ss_dssp HHHHHTTCCCEEEEEETTCBBTT--------------SCBC---CHHHHHHHHHH-HT------CCEEEEECGGGGTCSC
T ss_pred HHHHhcCCCceEEEEeCCCcccc--------------Ccch---hHHHHHHHHHH-hC------CcceeeccCHhhcCCC
Confidence 554433 5799999999996432 2211 14567787777 54 3456778999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEeeechhhhhhcCCccC--ccHHHHHHHHHhcCCCCCCChHH
Q 012698 369 SNASDNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANE 443 (458)
Q Consensus 369 p~a~Dr~~a~~lG~~Av~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~k~v~--~~~~~~~~~l~~tgqp~~~~~~~ 443 (458)
|+++||++|++||.+||+++++|++ ++|||+++++++++||++++.+.|.|+ .+...|.+.+...| ++|..+.+
T Consensus 295 Psa~DRilAtrlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~-~~f~~~~~ 373 (787)
T 3o8o_A 295 AVAHDRWLATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDKAISLRD-TEFIELYE 373 (787)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC-TTHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhcCCHHHHHhccC-HHHHHHHH
Confidence 9999999999999999999999997 799999999999999999999888887 56778999999877 89988877
Q ss_pred HHH
Q 012698 444 LAK 446 (458)
Q Consensus 444 ~~~ 446 (458)
+++
T Consensus 374 ~~~ 376 (787)
T 3o8o_A 374 NFL 376 (787)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 15
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=6.5e-74 Score=636.00 Aligned_cols=328 Identities=23% Similarity=0.324 Sum_probs=281.8
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC---cccCChhHHhchhhcCccccccCCCcc
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN---TINLTPKVVNDIHKRGGTILGTSRGGH 167 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~v~~~~~~GGs~LGtsR~~~ 167 (458)
.+||||+|||||||||||+||++|+++.. .+.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|+++
T Consensus 181 ~krIgIlTsGGdaPGmNAaIRaVVr~a~~--~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~~ 258 (941)
T 3opy_B 181 RKTIGVMTSGGDSPGMNPFVRAVVRAGIY--KGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKE 258 (941)
T ss_dssp CCCEEEEECSSCCTTHHHHHHHHHHHHHH--TTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCSG
T ss_pred CCEEEEEeeCcCchhHHHHHHHHHHHHHH--CCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCCc
Confidence 57999999999999999999999999863 4579999999999999986 789999999999999999999999863
Q ss_pred -----hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHH-----------------HHHHcCCCeeEeeecccccCchh-
Q 012698 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYE-----------------EIRQRGLKVAVAGIPKTIDNDIP- 224 (458)
Q Consensus 168 -----~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~-----------------~~~~~~~~i~vvgIPkTIDNDi~- 224 (458)
.+.+++++|++++||+||+||||||+++|++|++ +..+++..++|||||||||||++
T Consensus 259 f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~g 338 (941)
T 3opy_B 259 FRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSS 338 (941)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCC
Confidence 3678999999999999999999999999998764 33445678999999999999999
Q ss_pred -------------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccch-hhHHHHHH
Q 012698 225 -------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-GGLYEFIE 290 (458)
Q Consensus 225 -------------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~-~~~~~~i~ 290 (458)
++++|++++++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++++ +.+.+.++
T Consensus 339 TD~TiGfdTAv~~i~eaId~I~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-GAd~IlIPE~p~~~~~~~~~v~~~i~ 416 (941)
T 3opy_B 339 TDATIGAFSSLDRICRAIDYIDATANSH-SRAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIVG 416 (941)
T ss_dssp CSSCEEHHHHHHHHHHHHHHHHSCC-CC-SEEEEEECCCSSCCHHHHHHHHHT-TCSEEECTTSCCCSSCHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCcccHHHHHHHHhc-CCCEEEECCCCCChHHHHHHHHHHHH
Confidence 567899999999986 689999999999999999999999 89999999999999753 34556565
Q ss_pred HHHHh-CCcEEEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCC
Q 012698 291 KRLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPS 369 (458)
Q Consensus 291 ~r~~~-~~~~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p 369 (458)
++.++ ++|+|||||||+.+. .|+.. .+..+++.|+++++ +++|..+|||+|||++|
T Consensus 417 ~~~~~gk~~~IVVVAEGa~~~--------------~~~~i---~~~~l~~~i~~~~g------~d~R~tvLGhiQRGG~P 473 (941)
T 3opy_B 417 KHRARGKRKTIVIVAEGAISN--------------DLSPI---SCDQVKDVLVNRLG------LDTRVTTLGHVQRGGTA 473 (941)
T ss_dssp HHHHHTCCCEEEEECTTCBCT--------------TCCBC---CHHHHHHHHHHTSC------CEEEEEECGGGGTCSCC
T ss_pred HHHhcCCCcEEEEEeCCcccc--------------cCCcc---hHHHHHHHHHHHhC------CceeecccChhhcCCCC
Confidence 55443 579999999999642 22221 15678888887765 35677889999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEeeechhhhhhcCCccCc--cHHHHHHHHHhcCCCCCCChHHH
Q 012698 370 NASDNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVVI--TDRMWARVLSSTNQPSFLSANEL 444 (458)
Q Consensus 370 ~a~Dr~~a~~lG~~Av~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~k~v~~--~~~~~~~~l~~tgqp~~~~~~~~ 444 (458)
+++||++|++||.+||+++++|++ |+|||+++++++++||++++.+.|.|+. +...|.+.+...| ++|..+.+.
T Consensus 474 sa~DRilAtrlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~~~~f~~a~~lr~-~~f~~~~~~ 552 (941)
T 3opy_B 474 VAFDRIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIESRNFKKAISLRD-SEFVEHMKN 552 (941)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHSC-HHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHhcCCHHHHHHccC-HHHHHHHHH
Confidence 999999999999999999999997 7999999999999999999998888763 4557888888877 788877666
Q ss_pred HH
Q 012698 445 AK 446 (458)
Q Consensus 445 ~~ 446 (458)
++
T Consensus 553 ~~ 554 (941)
T 3opy_B 553 FI 554 (941)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.3e-73 Score=632.10 Aligned_cols=328 Identities=21% Similarity=0.305 Sum_probs=280.0
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CcccCChhHHhchhhcCccccccCCCcc
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGtsR~~~ 167 (458)
+.+||||+|||||||||||+||++|+++.. .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 209 ~~krIaIlTSGGdaPGmNAaIRaVVr~a~~--~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 209 GKKKIAIITSGGDAPGMNAAVRAVTRAGIF--YGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CSEEEEEEECSSCCTTHHHHHHHHHHHHHH--TTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred cCCEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 357999999999999999999999999863 457999999999999998 4889999999999999999999999853
Q ss_pred -----hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHH-----------------HHcCCCeeEeeecccccCchh-
Q 012698 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI-----------------RQRGLKVAVAGIPKTIDNDIP- 224 (458)
Q Consensus 168 -----~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~-----------------~~~~~~i~vvgIPkTIDNDi~- 224 (458)
++.+++++|++++||+||+|||||||++|++|+++. .+.+..++|||||||||||++
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 478999999999999999999999999999987531 223567999999999999999
Q ss_pred -------------HHHHHHHHHHHhhhcCCcEEEEEecCCcchhHHHHhhcccCCCceEecCCCCCCccchhh-HHHHHH
Q 012698 225 -------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGG-LYEFIE 290 (458)
Q Consensus 225 -------------a~~ai~~i~~~A~s~~~rv~iVEvMGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~-~~~~i~ 290 (458)
++++|++++++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++++.+ +.+.++
T Consensus 367 TD~TiGFdTAl~~i~eaId~I~~TA~Sh-~RvfVVEVMGR~aG~LAl~agLA~-GAd~IlIPE~pf~l~~~~~~l~~~i~ 444 (989)
T 3opy_A 367 TDSTIGAYSSLERIIELVDYIDATAASH-SRAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVCL 444 (989)
T ss_dssp CSCCEEHHHHHHHHHHHHHHHHSSCCCT-TEEEEEECCCSSCTHHHHHHHHHH-TCSEEECTTSCCCTTTHHHHHHHHHH
T ss_pred CCCCCChhhHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCchhHHHHHHHHhc-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 567899999999885 689999999999999999999999 8999999999999975443 334344
Q ss_pred HHHHh-CCcEEEEEeCCCCcchhHHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCC
Q 012698 291 KRLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPS 369 (458)
Q Consensus 291 ~r~~~-~~~~vVvVaEGa~~~~~~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p 369 (458)
++.++ ++|+|||||||+.+.. ++.. .+..+++.|++ ++ +++|..+|||+|||++|
T Consensus 445 k~~~~Gk~~~IVVVAEGa~~~~--------------~~~i---~~~~l~~~l~~-~G------~dtR~tvLGHiQRGG~P 500 (989)
T 3opy_A 445 RHREKGRRKTTVIVAEGAIDDQ--------------LNPI---TSEEVKDVLVE-IG------LDTRITRLGHVQRGGAP 500 (989)
T ss_dssp HHHHTTCCEEEEEECTTCBCTT--------------SCBC---CHHHHHHHHHT-TT------CEEEEEECGGGGGCSCC
T ss_pred HHHhcCCCceEEEEeCCccccc--------------cccc---hHHHHHHHHHH-hC------cchhhhhhhHHHcCCCC
Confidence 43333 4789999999996432 2211 13467777765 44 45677889999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeEeeechhhhhhcCCccC--ccHHHHHHHHHhcCCCCCCChHHH
Q 012698 370 NASDNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANEL 444 (458)
Q Consensus 370 ~a~Dr~~a~~lG~~Av~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~k~v~--~~~~~~~~~l~~tgqp~~~~~~~~ 444 (458)
+++||++|++||.+||+++++|++ |+|||+++++++++||++++.+.|.|+ .+...|.+.+...| ++|..+.+.
T Consensus 501 sa~DRilAtrlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~~k~f~~a~~lr~-~~F~~~~~~ 579 (989)
T 3opy_A 501 CAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDKALQLRD-QEFATSYEN 579 (989)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC-HHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhccCHHHHHhccC-hHHHHHHHH
Confidence 999999999999999999999985 899999999999999999999888887 45778999988877 788887666
Q ss_pred HH
Q 012698 445 AK 446 (458)
Q Consensus 445 ~~ 446 (458)
++
T Consensus 580 ~~ 581 (989)
T 3opy_A 580 FL 581 (989)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=94.82 E-value=0.046 Score=53.25 Aligned_cols=106 Identities=15% Similarity=0.087 Sum_probs=59.8
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
+|++|+.-.+ .+..+..++.+.+.+.+ .+.+++......+++-. .| . .....+.
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~--~g~~v~~~~~~~~~~~~-----------------~~----~--~~~~~~~ 59 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCD--QGYEVIVEQQIAHELQL-----------------KN----V--PTGTLAE 59 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHH--TTCEEEEEHHHHHHTTC-----------------SS----C--CEECHHH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHH--CCCEEEEecchhhhccc-----------------cc----c--cccchhh
Confidence 4799998765 37778888888888864 34577655443333210 01 0 0011111
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc-cccCchh------HHHHHHHHHH
Q 012698 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK-TIDNDIP------AQRAINAAHV 234 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk-TIDNDi~------a~~ai~~i~~ 234 (458)
...+.|.+|++|||||+..+..... +..+|++|||. | -|++. ..++++.+..
T Consensus 60 -----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~~Gt-~gfla~~~~~~~~~al~~i~~ 118 (292)
T 2an1_A 60 -----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGINRGN-LGFLTDLDPDNALQQLSDVLE 118 (292)
T ss_dssp -----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBCSSS-CCSSCCBCTTSHHHHHHHHHT
T ss_pred -----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEECCC-cccCCcCCHHHHHHHHHHHHc
Confidence 2346899999999999987664431 23578999993 4 34443 5566766644
No 18
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=93.10 E-value=4.9 Score=37.69 Aligned_cols=165 Identities=8% Similarity=0.011 Sum_probs=90.8
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cch
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHD 168 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~ 168 (458)
+..+|+++.....-|=...+++++.+.+.+ ++ .++.-+ ..+.. ...
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 49 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQA-LN-VTVEYR-------------------------------GAAQYDIQE 49 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECSSSCHHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------CCCcCCHHH
Confidence 456899999888889899999999888764 34 233310 11111 233
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc--hh---------HHHHHHHHHHHhh
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND--IP---------AQRAINAAHVEAE 237 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND--i~---------a~~ai~~i~~~A~ 237 (458)
..+.++.|...++|++++.+.+.+.. ....+.+.+.+ ||||.+-..+++. ++ ...+.+.+.....
T Consensus 50 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~ 125 (305)
T 3g1w_A 50 QITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDAG--IPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLD 125 (305)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHCC--CcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHhC
Confidence 45677888889999999998776521 11223333444 5677665555542 33 2233333333222
Q ss_pred hcCCcEEEEEecC------CcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhC
Q 012698 238 SIENGIGVVKLMG------RYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 296 (458)
Q Consensus 238 s~~~rv~iVEvMG------R~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~ 296 (458)
. ++++.++--.+ |..||........- ..+.+.+.+..++.+ .-.+.+.+.+++.
T Consensus 126 g-~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 185 (305)
T 3g1w_A 126 G-EGEVAVITLPNQLNHQERTTGFKETLEAEFP-AIEVIAVEDGRGDSL---HSRRVAHQLLEDY 185 (305)
T ss_dssp T-CEEEEEEECTTCHHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCHH---HHHHHHHHHHHHC
T ss_pred C-CcEEEEEeCCCcccHHHHHHHHHHHHHhhCC-CCEEEEEecCCCCHH---HHHHHHHHHHHhC
Confidence 4 45788876433 34456654433211 233444444445544 3444455555554
No 19
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=90.17 E-value=0.12 Score=50.10 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcC-------CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh-------HHHHHHHHH
Q 012698 169 TSKIVDSIQDRG-------INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP-------AQRAINAAH 233 (458)
Q Consensus 169 ~~~i~~~l~~~~-------I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~-------a~~ai~~i~ 233 (458)
.+++.+.|++++ .|.+|++|||||+..|..... ....++|++|||. =.++.. ..++++.+.
T Consensus 17 ~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~-G~lgfl~~~~~~~~~~~l~~l~ 91 (272)
T 2i2c_A 17 RLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT-GHLGFYADWRPAEADKLVKLLA 91 (272)
T ss_dssp HHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES-SSCCSSCCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC-CCCCcCCcCCHHHHHHHHHHHH
Confidence 445556666655 599999999999987665431 1112689999984 234432 445666554
No 20
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=87.82 E-value=10 Score=35.24 Aligned_cols=92 Identities=9% Similarity=0.095 Sum_probs=57.2
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchH
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~ 169 (458)
+..+||++...-.-|=...++.++.+.+.+ ++ .++.-+. +.......
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARH-KG-YSVLLAN-------------------------------TAEDIVRE 53 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHH
Confidence 346899999877777788888888887754 33 3443110 11112234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
.+.++.|...++|++++.+-+..... .+.+.+. .||+|.+=..++
T Consensus 54 ~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~~~~~--~iPvV~~~~~~~ 98 (291)
T 3egc_A 54 REAVGQFFERRVDGLILAPSEGEHDY----LRTELPK--TFPIVAVNRELR 98 (291)
T ss_dssp HHHHHHHHHTTCSEEEECCCSSCCHH----HHHSSCT--TSCEEEESSCCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChHH----HHHhhcc--CCCEEEEecccC
Confidence 56788899999999999988763322 2223223 466776544443
No 21
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=85.62 E-value=13 Score=34.32 Aligned_cols=119 Identities=8% Similarity=0.066 Sum_probs=71.3
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchH
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~ 169 (458)
+..+||++...-.-|-...+++++.+.+.+ ++ .++.- .-+.......
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~ 50 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIER-LG-GTAIA-------------------------------LDAGRNDQTQ 50 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TT-CEEEE-------------------------------EECTTCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EcCCCCHHHH
Confidence 446899999877777778888888887764 33 23321 1111112334
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh---------HHHHHHHHHHHhhhcC
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP---------AQRAINAAHVEAESIE 240 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~---------a~~ai~~i~~~A~s~~ 240 (458)
...++.+...++|++++.+.+.+.. ....+.+.+.+ ||||.+-...+++++ ...+.+.+......+
T Consensus 51 ~~~~~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~- 125 (291)
T 3l49_A 51 VSQIQTLIAQKPDAIIEQLGNLDVL--NPWLQKINDAG--IPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGK- 125 (291)
T ss_dssp HHHHHHHHHHCCSEEEEESSCHHHH--HHHHHHHHHTT--CCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCC-
Confidence 5678888899999999998874322 22234444455 557766555554444 233444444433454
Q ss_pred CcEEEE
Q 012698 241 NGIGVV 246 (458)
Q Consensus 241 ~rv~iV 246 (458)
++|.++
T Consensus 126 ~~i~~i 131 (291)
T 3l49_A 126 GNVLVF 131 (291)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 567777
No 22
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=84.67 E-value=28 Score=33.18 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=84.7
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++...-.-|-...+++++-..+.+ ++ .+++ +..+.. ....
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 107 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDA-AG-YQML--------------------------------IGNSHYDAGQE 107 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHH
Confidence 35899999877778888899998887764 33 2332 111111 1234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc-------ccCchh--HHHHHHHHHHHhhhcC
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT-------IDNDIP--AQRAINAAHVEAESIE 240 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT-------IDNDi~--a~~ai~~i~~~A~s~~ 240 (458)
.+.++.|...++|++++.+-+.+-.. .+.+.+.+ +|+|.+=.. |..|-. +..+.+.+.. .. +
T Consensus 108 ~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~G-~ 178 (339)
T 3h5o_A 108 LQLLRAYLQHRPDGVLITGLSHAEPF----ERILSQHA--LPVVYMMDLADDGRCCVGFSQEDAGAAITRHLLS--RG-K 178 (339)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCTTH----HHHHHHTT--CCEEEEESCCSSSCCEEECCHHHHHHHHHHHHHH--TT-C
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCHHH----HHHHhcCC--CCEEEEeecCCCCCeEEEECHHHHHHHHHHHHHH--CC-C
Confidence 56778888999999999987655432 23333445 456655221 222222 2333333322 25 4
Q ss_pred CcEEEEEec------CCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhC
Q 012698 241 NGIGVVKLM------GRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 296 (458)
Q Consensus 241 ~rv~iVEvM------GR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~ 296 (458)
+++.++--. -|..||........-...+..++.+..++.+ .-.+.+++-++++
T Consensus 179 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~ 237 (339)
T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQ---MGADMLDRALAER 237 (339)
T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHH---HHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHH---HHHHHHHHHHcCC
Confidence 678887432 2455666654332110123333444556554 2334444444443
No 23
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=84.42 E-value=26 Score=32.60 Aligned_cols=127 Identities=11% Similarity=0.087 Sum_probs=69.6
Q ss_pred ceEEEEEcc----CCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc
Q 012698 91 EVHACIVTC----GGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG 166 (458)
Q Consensus 91 ~~~iaIlts----GG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~ 166 (458)
..+||++.. .-.-|=...+++++.+.+.+ ++ .++.-+. + ...
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~-~~~ 51 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGK-RG-LDLLLIP-------------------------------D-EPG 51 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------E-CTT
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------C-CCh
Confidence 458999986 33455666788888777754 33 3443111 0 001
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC-chh---------HHHHHHHHHHHh
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN-DIP---------AQRAINAAHVEA 236 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN-Di~---------a~~ai~~i~~~A 236 (458)
.....+.+.|...++|++++.+.+.+-.. .+.+.+.+ +|||.+=...++ +++ ...+.+.+..
T Consensus 52 ~~~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~-- 123 (294)
T 3qk7_A 52 EKYQSLIHLVETRRVDALIVAHTQPEDFR----LQYLQKQN--FPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLE-- 123 (294)
T ss_dssp CCCHHHHHHHHHTCCSEEEECSCCSSCHH----HHHHHHTT--CCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhCC--CCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHH--
Confidence 22346778888999999999998765432 23344445 456654333222 121 2333333322
Q ss_pred hhcCCcEEEEEecC-------CcchhHHHHh
Q 012698 237 ESIENGIGVVKLMG-------RYCGFIAMYA 260 (458)
Q Consensus 237 ~s~~~rv~iVEvMG-------R~~G~lA~~a 260 (458)
.. ++++.++---- |..||.....
T Consensus 124 ~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al~ 153 (294)
T 3qk7_A 124 LG-HQRIAFVSTDARISYVDQRLQGYVQTMS 153 (294)
T ss_dssp TT-CCCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CC-CceEEEEeCCcccchHHHHHHHHHHHHH
Confidence 35 45788875432 4556666543
No 24
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=84.31 E-value=29 Score=33.02 Aligned_cols=90 Identities=9% Similarity=0.058 Sum_probs=55.5
Q ss_pred ceEEEEEccC--CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cc
Q 012698 91 EVHACIVTCG--GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GH 167 (458)
Q Consensus 91 ~~~iaIltsG--G~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~ 167 (458)
..+||++... -.-|=...++.++.+.+.+ ++ .+++ +..+.. ..
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~ 106 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLL--------------------------------LADGKHSAE 106 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTSHH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChH
Confidence 4589999977 5667778888888887764 33 2332 111111 12
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
...+.++.|...++|++++.+.+.+... +.+.+.+.+ +|+|.+=..+
T Consensus 107 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~~~~~~ 153 (338)
T 3dbi_A 107 EERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMVLNRRL 153 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEEESSCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEEEcCCC
Confidence 2345778889999999999987766432 333344444 5566554333
No 25
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=83.76 E-value=25 Score=32.31 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=57.7
Q ss_pred CceEEEEEccC-----CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCC
Q 012698 90 DEVHACIVTCG-----GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR 164 (458)
Q Consensus 90 ~~~~iaIltsG-----G~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR 164 (458)
+..+||++... -.-|-...+++++.+.+.+ ++ .++. +..+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~ 52 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EG-YALY--------------------------------MSTGE 52 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TT-CEEE--------------------------------ECCCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCC
Confidence 34689999987 6778888899999888764 33 2332 11111
Q ss_pred Cc-chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 165 GG-HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 165 ~~-~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
.. +...++.+.+...++|++++.+.+.+-. ..+.+.+.+ +|||.+=..++
T Consensus 53 ~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~ 103 (292)
T 3k4h_A 53 TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQN--FPFVLIGKPYD 103 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTT--CCEEEESCCSS
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCC--CCEEEECCCCC
Confidence 11 2345678888999999999998775532 233344455 45665544443
No 26
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=82.57 E-value=0.44 Score=46.65 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=30.4
Q ss_pred HHHHHHHHHHc---------------CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 169 TSKIVDSIQDR---------------GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 169 ~~~i~~~l~~~---------------~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
.+++.+.|+++ +.|.+|++|||||+..|..... .. +||+||..
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~ 99 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT 99 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC
Confidence 55666666665 4588999999999966554321 33 89999974
No 27
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=82.11 E-value=31 Score=31.67 Aligned_cols=90 Identities=9% Similarity=0.079 Sum_probs=52.2
Q ss_pred ceEEEEEccC--CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cc
Q 012698 91 EVHACIVTCG--GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GH 167 (458)
Q Consensus 91 ~~~iaIltsG--G~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~ 167 (458)
..+||++... -..|-...++.++.+.+.+ ++ .++. +-.+.. ..
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~ 64 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLL--------------------------------LADGKHSAE 64 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TT-CEEE--------------------------------EECCTTSHH
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCHH
Confidence 4589999865 5667777888888777753 22 2322 001111 12
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-cCCCeeEeeeccccc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-RGLKVAVAGIPKTID 220 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~-~~~~i~vvgIPkTID 220 (458)
.....++.|...++|++++.+.+.+-. .+ +.+.+ .+ +|+|.+-...+
T Consensus 65 ~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~~--iPvV~~~~~~~ 112 (296)
T 3brq_A 65 EERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAHS--QPIMVLNRRLR 112 (296)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTCS--SCEEEESCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcCC--CCEEEEccccC
Confidence 234567778889999999998765422 22 33444 44 56776644443
No 28
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=81.60 E-value=38 Score=32.36 Aligned_cols=85 Identities=13% Similarity=0.062 Sum_probs=53.5
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCC-CcchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR-GGHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR-~~~~~ 169 (458)
..+||++...-.-|=...+++++.+.+.+ ++ .+++ +..+. ..+..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 113 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLED-TE-LQPV--------------------------------VGVTDYLPEKE 113 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTS-SS-SEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCHHHH
Confidence 35899999776677778888888877753 33 3332 11111 12234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
.+.++.|...++|++++.+-+.+-. +.+.+.+.++ |+|.+
T Consensus 114 ~~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~i--PvV~i 153 (344)
T 3kjx_A 114 EKVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAGI--PVVEI 153 (344)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCSS--CEEEE
T ss_pred HHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCCC--CEEEE
Confidence 5677888899999999998765542 2233444554 56655
No 29
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=80.32 E-value=41 Score=31.94 Aligned_cols=89 Identities=9% Similarity=0.101 Sum_probs=52.4
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++...-.-|-...++.++.+.+.+ ++ .+++ +..+.. ....
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~ 108 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIASM-YK-YNMI--------------------------------LANSDNDVEKE 108 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEECCCChHHH
Confidence 45899998765667777788888777753 23 2332 111111 1223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
...++.|...++|++++.+.+.+-.. + +.+.+.+ +|+|.+-...
T Consensus 109 ~~~~~~l~~~~vdgiI~~~~~~~~~~---~-~~l~~~~--iPvV~~~~~~ 152 (332)
T 2o20_A 109 EKVLETFLSKQVDGIVYMGSSLDEKI---R-TSLKNSR--TPVVLVGTID 152 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSSCCCHHH---H-HHHHHHC--CCEEEESCCC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHH---H-HHHHhCC--CCEEEEcccc
Confidence 45677888899999999987554322 2 2333345 4566654433
No 30
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=79.06 E-value=40 Score=31.12 Aligned_cols=88 Identities=8% Similarity=-0.065 Sum_probs=51.0
Q ss_pred ceEEEEEccCCCC--cchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcch
Q 012698 91 EVHACIVTCGGLC--PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (458)
Q Consensus 91 ~~~iaIltsGG~a--pGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~ 168 (458)
..+|||+...-.- |=...++.++-+.+.+ ++ .++.-+ -+......
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~ 54 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLST-TQ-YHLVVT-------------------------------PHIHAKDS 54 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SS-CEEEEC-------------------------------CBSSGGGT
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------cCCcchhH
Confidence 4589999875443 7778888888777743 23 233200 00001122
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
...+.+.+...++|++++.+.+.+-.. .+.+.+.+ +|+|.+=.
T Consensus 55 ~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV~i~~ 97 (288)
T 3gv0_A 55 MVPIRYILETGSADGVIISKIEPNDPR----VRFMTERN--MPFVTHGR 97 (288)
T ss_dssp THHHHHHHHHTCCSEEEEESCCTTCHH----HHHHHHTT--CCEEEESC
T ss_pred HHHHHHHHHcCCccEEEEecCCCCcHH----HHHHhhCC--CCEEEECC
Confidence 345666788899999999986644332 23334445 55665433
No 31
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=77.56 E-value=0.97 Score=44.37 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=33.6
Q ss_pred HcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc-cccCchh------HHHHHHHHHH
Q 012698 178 DRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK-TIDNDIP------AQRAINAAHV 234 (458)
Q Consensus 178 ~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk-TIDNDi~------a~~ai~~i~~ 234 (458)
..+.|.++++|||||+..|...... . .+|++||+. |. |++. ..++++.+..
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~~G~~-gfl~~~~~~~~~~~~~~i~~ 130 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVNLGRI-GFLAEAEAEAIDAVLEHVVA 130 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEECSSC-CSSCSEEGGGHHHHHHHHHH
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEeCCCC-ccCcccCHHHHHHHHHHHHc
Confidence 3478999999999998877654432 2 468999983 44 5544 4566766654
No 32
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=77.38 E-value=45 Score=30.83 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=70.5
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++...-.-|-...++.++.+.+.+ ++ .++. +-.+.. ....
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 61 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATM-YK-YNII--------------------------------LSNSDQNMEKE 61 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 45899999766667777788888777753 33 2332 001111 1223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC-chh---------HHHHHHHHHHHhhhc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN-DIP---------AQRAINAAHVEAESI 239 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN-Di~---------a~~ai~~i~~~A~s~ 239 (458)
.+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+-...++ +++ ...+.+.+.. ..
T Consensus 62 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~G- 132 (289)
T 2fep_A 62 LHLLNTMLGKQVDGIVFMGGNITDE----HVAEFKRSP--VPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVD--KG- 132 (289)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHH----HHHHHHHSS--SCEEEESCCCTTCCSCEEECCHHHHHHHHHHHHHH--TT-
T ss_pred HHHHHHHHhCCCCEEEEecCCCCHH----HHHHHHhcC--CCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHH--CC-
Confidence 4667888889999999998765422 123333444 556666444332 222 2333343332 24
Q ss_pred CCcEEEEEecC--------CcchhHHHHh
Q 012698 240 ENGIGVVKLMG--------RYCGFIAMYA 260 (458)
Q Consensus 240 ~~rv~iVEvMG--------R~~G~lA~~a 260 (458)
++++.++--.. |..||.....
T Consensus 133 ~~~I~~i~~~~~~~~~~~~R~~Gf~~al~ 161 (289)
T 2fep_A 133 HTDIAFVSGPMAEPINRSKKLQGYKRALE 161 (289)
T ss_dssp CSSEEEEESCTTSHHHHTTHHHHHHHHHH
T ss_pred CCeEEEEeCCccccccHHHHHHHHHHHHH
Confidence 46787775332 4456665443
No 33
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=76.75 E-value=3.8 Score=40.37 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (458)
++++.+...+.|.++++|||||+..+..-. .+.+.++++.+||.==-||+.
T Consensus 71 ~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l---~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 71 LEAERAMHENYDVLIAAGGDGTLNEVVNGI---AEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHTTTTCSEEEEEECHHHHHHHHHHH---TTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHhhcCCCEEEEEcCchHHHHHHHHH---HhCCCCCcEEEecCCcHhHHH
Confidence 444445556789999999999987755432 223557899999997788887
No 34
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=76.62 E-value=1.2 Score=45.19 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=57.7
Q ss_pred cccccCCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccc--cccCCcccCChhHHhchhhcCcccc
Q 012698 83 QKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRG--FYSKNTINLTPKVVNDIHKRGGTIL 160 (458)
Q Consensus 83 ~~~~~~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~G--L~~~~~~~L~~~~v~~~~~~GGs~L 160 (458)
+++.+....++|+|++== ..|.+-..++.+++.+.. .+.+||-=..=.+- +.+. ....... .. +
T Consensus 30 ~~l~w~~~~k~I~iv~K~-~~~~~~~~~~~l~~~L~~--~~~~V~ve~~~~~~~~~~~~----~~~~~~~---~~----~ 95 (365)
T 3pfn_A 30 QRLTWNKSPKSVLVIKKM-RDASLLQPFKELCTHLME--ENMIVYVEKKVLEDPAIASD----ESFGAVK---KK----F 95 (365)
T ss_dssp CBEEESSCCCEEEEEECT-TCGGGHHHHHHHHHHHHH--TSCEEEEEHHHHHSHHHHHC----STTHHHH---HH----C
T ss_pred cccccCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH--CCCEEEEehHHhhhhccccc----ccccccc---cc----c
Confidence 344445455689999852 357788889999988865 34577621110000 0000 0000000 00 0
Q ss_pred ccCCCcchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 161 GTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 161 GtsR~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
-+.+. +.+.+ ..++|.+|++|||||+-.|..+.. +..+||+||=
T Consensus 96 ~~~~~--~~~~~-----~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN 139 (365)
T 3pfn_A 96 CTFRE--DYDDI-----SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFH 139 (365)
T ss_dssp EEECT--TTCCC-----TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEE
T ss_pred ccccc--Chhhc-----ccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEc
Confidence 00000 00011 247899999999999987776542 4467899884
No 35
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=75.94 E-value=49 Score=30.49 Aligned_cols=90 Identities=7% Similarity=-0.057 Sum_probs=52.5
Q ss_pred ceEEEEEccC-C---CCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc
Q 012698 91 EVHACIVTCG-G---LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG 166 (458)
Q Consensus 91 ~~~iaIltsG-G---~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~ 166 (458)
..+||++... - .-|-...+++++.+.+.+ ++ .++.- .+ +....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-~~------------------------------~~~~~ 50 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VN-YFVLP-FP------------------------------FSEDR 50 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TT-CEEEE-CC------------------------------CCSST
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH-cC-CEEEE-Ee------------------------------CCCch
Confidence 3579999865 3 567778888888887753 33 23320 00 00011
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
....+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+-..+
T Consensus 51 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~ 97 (287)
T 3bbl_A 51 SQIDIYRDLIRSGNVDGFVLSSINYNDP----RVQFLLKQK--FPFVAFGRSN 97 (287)
T ss_dssp TCCHHHHHHHHTTCCSEEEECSCCTTCH----HHHHHHHTT--CCEEEESCCS
T ss_pred HHHHHHHHHHHcCCCCEEEEeecCCCcH----HHHHHHhcC--CCEEEECCcC
Confidence 1224567778889999999998765432 223333444 5677664433
No 36
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=75.20 E-value=44 Score=31.15 Aligned_cols=127 Identities=9% Similarity=0.106 Sum_probs=74.1
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++...-.-|=...+++++.+.+.+ ++ .+++ +.++.. ....
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 60 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASG-HS-TDVL--------------------------------LGQIDAPPRGT 60 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHH-TT-CCEE--------------------------------EEECCSTTHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHH
Confidence 35799998877778888888888887754 33 2332 111111 2334
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh---------HHHHHHHHHHHhhhcC
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP---------AQRAINAAHVEAESIE 240 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~---------a~~ai~~i~~~A~s~~ 240 (458)
.+.++.|...++|++++.+.+.+... ..+.+.+ .+|||.+=..++++++ +..+.+.+.. ..+
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~---~iPvV~i~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~G~- 131 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE---GVPAVTINSRVPGRVGSVILDDQKGGGIATEHLIT--LGH- 131 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT---TSCEEEESCCCTTCCCEEEECHHHHHHHHHHHHHH--TTC-
T ss_pred HHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC---CCCEEEECCcCCCCCCEEEECcHHHHHHHHHHHHH--CCC-
Confidence 57788899999999999998776430 2233333 4667776555543332 2333433322 353
Q ss_pred CcEEEEEec-------CCcchhHHHHh
Q 012698 241 NGIGVVKLM-------GRYCGFIAMYA 260 (458)
Q Consensus 241 ~rv~iVEvM-------GR~~G~lA~~a 260 (458)
+++.++--. -|..||.....
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~ 158 (303)
T 3kke_A 132 SRIAFISGTAIHDTAQRRKEGYLETLA 158 (303)
T ss_dssp CSEEEEESCSSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcCccHHHHHHHHHHHHH
Confidence 578777432 24556665543
No 37
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=75.13 E-value=44 Score=31.17 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=57.8
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
+.+||++...-.-|-...+++++.+.+.+ ++ .++.- ..+........
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 48 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVFV-------------------------------QSANGNEETQM 48 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TS-CEEEE-------------------------------EECTTCHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ECCCCCHHHHH
Confidence 45899999877788889999999888764 33 23330 11111122345
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
+.++.|...++|++++.+-+.+.. ..+.+.+.+. .||||.+=..++
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--~iPvV~~~~~~~ 94 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQE--GIKVLAYDRMIN 94 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTT--TCEEEEESSCCT
T ss_pred HHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHC--CCeEEEECCcCC
Confidence 677888899999999999876531 1122333334 466776644443
No 38
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=74.04 E-value=54 Score=30.08 Aligned_cols=177 Identities=8% Similarity=-0.026 Sum_probs=95.2
Q ss_pred CceEEEEEccCC-CCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cc
Q 012698 90 DEVHACIVTCGG-LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GH 167 (458)
Q Consensus 90 ~~~~iaIltsGG-~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~ 167 (458)
+..+||++...- .-|=...+++++.+.+.+ .++..+.-.. ...+.. ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~~g~~~~~~~-----------------------------~~~~~~~~~ 56 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTT-YSDFNISANI-----------------------------THYDPYDYN 56 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHH-TGGGCEEEEE-----------------------------EEECSSCHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHH-HHhCCeEEEE-----------------------------EcCCCCCHH
Confidence 456899999877 788888899998887764 2122222100 000111 12
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc--hh---------HHHHHHHHHHHh
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND--IP---------AQRAINAAHVEA 236 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND--i~---------a~~ai~~i~~~A 236 (458)
...+.++.|...++|++++.+-+.... ..+.+.+.+.+ ||||.+-..++++ ++ ...+.+.+...
T Consensus 57 ~~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~- 131 (304)
T 3gbv_A 57 SFVATSQAVIEEQPDGVMFAPTVPQYT--KGFTDALNELG--IPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLL- 131 (304)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSSGGGT--HHHHHHHHHHT--CCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCEEEECCCChHHH--HHHHHHHHHCC--CeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHHH-
Confidence 345677888899999999998775421 11223333445 5577665555442 22 22233333222
Q ss_pred hhc-CCcEEEEEe-----------cCCcchhHHHHhhcccCCCceEecCCCCCCccchhhHHHHHHHHHHhC--CcEEEE
Q 012698 237 ESI-ENGIGVVKL-----------MGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN--GHMVIV 302 (458)
Q Consensus 237 ~s~-~~rv~iVEv-----------MGR~~G~lA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~--~~~vVv 302 (458)
.+ +++|.++-. .-|..||........- ..+...+.+..++.+ .-.+.+++.+++. --+|+.
T Consensus 132 -g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ai~~ 206 (304)
T 3gbv_A 132 -AVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHP-ACNILELNLHADLNI---EDSRMLDDFFREHPDVKHGIT 206 (304)
T ss_dssp -STTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCT-TSEEEEEEEESSCSS---CHHHHHHHHHHHCTTCCEEEE
T ss_pred -hCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCC-CcEEEEeeecCCCHH---HHHHHHHHHHHhCCCeEEEEE
Confidence 22 157888752 3466788776654322 344454444455555 2344455555553 235554
Q ss_pred EeCC
Q 012698 303 IAEG 306 (458)
Q Consensus 303 VaEG 306 (458)
.+..
T Consensus 207 ~~d~ 210 (304)
T 3gbv_A 207 FNSK 210 (304)
T ss_dssp SSSC
T ss_pred cCcc
Confidence 4443
No 39
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=73.32 E-value=9.2 Score=37.53 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc--CCCeeEeeecccccCchh--------HHHHHHHHHHHhhhcC
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--GLKVAVAGIPKTIDNDIP--------AQRAINAAHVEAESIE 240 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~--~~~i~vvgIPkTIDNDi~--------a~~ai~~i~~~A~s~~ 240 (458)
++++.+...+.|.++++|||||+..+..-. .+. +.++++..||.==-||+. ..++++.+.. ...
T Consensus 73 ~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l---~~~~~~~~~plgiiP~Gt~N~fa~~l~i~~~~~~al~~i~~---g~~ 146 (332)
T 2bon_A 73 RYVEEARKFGVATVIAGGGDGTINEVSTAL---IQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIA---GDA 146 (332)
T ss_dssp HHHHHHHHHTCSEEEEEESHHHHHHHHHHH---HHCCSSCCCEEEEEECSSSCHHHHHTTCCSSHHHHHHHHHH---SEE
T ss_pred HHHHHHHhcCCCEEEEEccchHHHHHHHHH---hhcccCCCCeEEEecCcCHHHHHHhcCCCCCHHHHHHHHHc---CCe
Confidence 344444556799999999999987755432 222 456788889987778877 3345554432 222
Q ss_pred CcEEEEEecCC
Q 012698 241 NGIGVVKLMGR 251 (458)
Q Consensus 241 ~rv~iVEvMGR 251 (458)
+++=+.++-+|
T Consensus 147 ~~iDlg~v~~r 157 (332)
T 2bon_A 147 IAIDMAQVNKQ 157 (332)
T ss_dssp EEEEEEEETTS
T ss_pred EEeeEEEECCc
Confidence 34555566565
No 40
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=71.91 E-value=71 Score=30.55 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=84.6
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++...-.-|-...++.++.+.+.+ ++ .+++ +..+.. ....
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 115 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQ-GG-LQLL--------------------------------LGYTAYSPERE 115 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHH
Confidence 35899998776667777888888777754 33 3332 111111 1234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc--------cccCchh--HHHHHHHHHHHhhhc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK--------TIDNDIP--AQRAINAAHVEAESI 239 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk--------TIDNDi~--a~~ai~~i~~~A~s~ 239 (458)
.+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+=. +|..|-. +..+.+.+.. ..+
T Consensus 116 ~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~G~ 187 (355)
T 3e3m_A 116 EQLVETMLRRRPEAMVLSYDGHTEQ----TIRLLQRAS--IPIVEIWEKPAHPIGHTVGFSNERAAYDMTNALLA--RGF 187 (355)
T ss_dssp HHHHHHHHHTCCSEEEEECSCCCHH----HHHHHHHCC--SCEEEESSCCSSCSSEEEECCHHHHHHHHHHHHHH--TTC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHH--CCC
Confidence 5677888899999999998776542 223344455 45666511 2222222 3334433322 354
Q ss_pred CCcEEEEEec--------CCcchhHHHHhhcccCCCc-eEecCCCCCCccchhhHHHHHHHHHHh
Q 012698 240 ENGIGVVKLM--------GRYCGFIAMYATLGSRDVD-CCLIPESPFYLEGEGGLYEFIEKRLKE 295 (458)
Q Consensus 240 ~~rv~iVEvM--------GR~~G~lA~~aaLA~~~ad-~ilIPE~~~~l~~~~~~~~~i~~r~~~ 295 (458)
+++.++--. -|..||..+.....- ..+ .+.+.+.+++.+ .-.+.+++-+++
T Consensus 188 -r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~~~~~---~~~~~~~~ll~~ 247 (355)
T 3e3m_A 188 -RKIVFLGEKDDDWTRGAARRAGFKRAMREAGL-NPDQEIRLGAPPLSIE---DGVAAAELILQE 247 (355)
T ss_dssp -CSEEEEEESSCTTSHHHHHHHHHHHHHHHTTS-CSCCEEEESCSSCCHH---HHHHHHHHHHHH
T ss_pred -CeEEEEccCcccChhHHHHHHHHHHHHHHCCc-CCCccEEEecCCCCHH---HHHHHHHHHHcC
Confidence 578777532 245567665543221 122 234444456554 233444444544
No 41
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=71.48 E-value=0.94 Score=43.34 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=32.8
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc-cccCchh------HHHHHHHHH
Q 012698 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK-TIDNDIP------AQRAINAAH 233 (458)
Q Consensus 179 ~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk-TIDNDi~------a~~ai~~i~ 233 (458)
.+.|.+|++|||||+..+.... .+ .+|++||+. |. |.+. ..++++.+.
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~-----~~-~~PilGIn~G~~-Gfl~~~~~~~~~~al~~i~ 94 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKA-----AD-GTPMVGFKAGRL-GFLTSYTLDEIDRFLEDLR 94 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTB-----CT-TCEEEEEESSSC-CSSCCBCGGGHHHHHHHHH
T ss_pred CCCCEEEEEeCcHHHHHHHHHh-----CC-CCCEEEEECCCC-CccCcCCHHHHHHHHHHHH
Confidence 4789999999999987765432 13 688999982 43 4443 455666554
No 42
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=71.13 E-value=63 Score=29.57 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=58.7
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchH
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~ 169 (458)
+..+||++...-.-|=...+++++.+.+.+ ++ .++.-+ -+.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 53 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NK-YEALVA-------------------------------TSQNSRISE 53 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECSSCHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------CCCCCHHHH
Confidence 346899999887778888888988887764 33 233311 011112234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
.+.++.|...++|++++.+.+..... .+.+.+.+.+ ||||.+=..+++
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~~--iPvV~~~~~~~~ 101 (293)
T 3l6u_A 54 REQILEFVHLKVDAIFITTLDDVYIG--SAIEEAKKAG--IPVFAIDRMIRS 101 (293)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTTTH--HHHHHHHHTT--CCEEEESSCCCC
T ss_pred HHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHcC--CCEEEecCCCCC
Confidence 56778888899999999987765421 2223344445 567776555554
No 43
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=70.71 E-value=66 Score=29.64 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=70.1
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++...-.-|=...++.++.+.+.+ ++ .++. +.++.. ....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 53 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRA-VH-RHVV--------------------------------VATGCGESTPR 53 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EECCCSSSCHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCchhhh
Confidence 45899999766667777788888777753 33 2332 001111 1223
Q ss_pred HH---HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC-chh---------HHHHHHHHHHHh
Q 012698 170 SK---IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN-DIP---------AQRAINAAHVEA 236 (458)
Q Consensus 170 ~~---i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN-Di~---------a~~ai~~i~~~A 236 (458)
.. .++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+-..+++ +++ +..+.+.+..
T Consensus 54 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~-- 125 (290)
T 2rgy_A 54 EQALEAVRFLIGRDCDGVVVISHDLHDE----DLDELHRMH--PKMVFLNRAFDALPDASFCPDHRRGGELAAATLIE-- 125 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCHH----HHHHHHHHC--SSEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHhcCccEEEEecCCCCHH----HHHHHhhcC--CCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHH--
Confidence 34 77888899999999998776522 223333445 456666444433 222 2233333332
Q ss_pred hhcCCcEEEEEec-------CCcchhHHHHh
Q 012698 237 ESIENGIGVVKLM-------GRYCGFIAMYA 260 (458)
Q Consensus 237 ~s~~~rv~iVEvM-------GR~~G~lA~~a 260 (458)
.. +++|.++--. -|..||.....
T Consensus 126 ~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al~ 155 (290)
T 2rgy_A 126 HG-HRKLAVISGPFTASDNVERLDGFFDELA 155 (290)
T ss_dssp TT-CCSEEEEESCTTCHHHHHHHHHHHHHHH
T ss_pred CC-CceEEEEeCCCCCccHHHHHHHHHHHHH
Confidence 24 4678877532 13446665443
No 44
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=69.48 E-value=1.2 Score=45.66 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCCe-eEeeec
Q 012698 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV-AVAGIP 216 (458)
Q Consensus 179 ~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i-~vvgIP 216 (458)
.+.|.+|++|||||+..|..... ...+ ||+||+
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN 146 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFA 146 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEE
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEE
Confidence 45899999999999987765432 2356 799997
No 45
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=68.79 E-value=67 Score=28.95 Aligned_cols=94 Identities=10% Similarity=0.020 Sum_probs=56.1
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
.|||++...-.-|-...+++++.+.+.+ ++ .++. +... .+........+
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~-------------~~~~----------------~~~~~~~~~~~ 49 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADE-AG-VTLL-------------HRST----------------KDDGDIAGQIQ 49 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHH-HT-CEEE-------------ECCC----------------SSTTCHHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEE-------------EECC----------------CCCCCHHHHHH
Confidence 3799999888888889999999888764 33 2332 0000 01111123446
Q ss_pred HHHHHHHcC-CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 172 IVDSIQDRG-INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 172 i~~~l~~~~-I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
.++.|...+ +|++++.+-+..... ...+.+.+.+ +|+|.+-..++
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~~~~~--~~~~~~~~~~--ipvV~~~~~~~ 95 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSAEDLT--PSVAQYRARN--IPVLVVDSDLA 95 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSSTTTTH--HHHHHHHHTT--CCEEEESSCCS
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHHH--HHHHHHHHCC--CcEEEEecCCC
Confidence 778888888 999999986543221 1223344445 56776654444
No 46
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=68.13 E-value=71 Score=29.64 Aligned_cols=91 Identities=13% Similarity=0.159 Sum_probs=54.1
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
+.+||++...-..|-...++.++-+.+.+ ++ .+++ +..+.. ....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~l~--------------------------------~~~~~~~~~~~ 47 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEK-RG-ITLK--------------------------------IADGQQKQENQ 47 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EeCCCCCHHHH
Confidence 36899999877777777788888777753 33 2322 111111 1223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCch-HHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQ-KGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~-~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
.+.++.|...++|++++.+.+.+. .. ..+.+.+.+ +|||.+-..++
T Consensus 48 ~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~--iPvV~~~~~~~ 94 (306)
T 2vk2_A 48 IKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDAE--IPVFLLDRSID 94 (306)
T ss_dssp HHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHTT--CCEEEESSCCC
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHCC--CCEEEecCCCC
Confidence 456778888999999999876542 22 223333445 55666644443
No 47
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=67.86 E-value=87 Score=29.94 Aligned_cols=127 Identities=14% Similarity=0.195 Sum_probs=68.7
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++...-.-|-...++.++-+.+.+ ++ .+++ +..+.. ....
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 111 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASK-AG-LATI--------------------------------ITNSNEDATTM 111 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHH-TT-CCEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 35799998665566667778887777653 22 2222 101111 1223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC--chh---------HHHHHHHHHHHhhh
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN--DIP---------AQRAINAAHVEAES 238 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN--Di~---------a~~ai~~i~~~A~s 238 (458)
...++.|...++|++++.+.+.+- ...+.+.+.+ +|+|.+-..+++ +++ +..+.+.+.. ..
T Consensus 112 ~~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~G 183 (348)
T 3bil_A 112 SGSLEFLTSHGVDGIICVPNEECA----NQLEDLQKQG--MPVVLVDRELPGDSTIPTATSNPQPGIAAAVELLAH--NN 183 (348)
T ss_dssp HHHHHHHHHTTCSCEEECCCGGGH----HHHHHHHHC---CCEEEESSCCSCC-CCCEEEEECHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCh----HHHHHHHhCC--CCEEEEcccCCCCCCCCEEEeChHHHHHHHHHHHHH--CC
Confidence 456788888999999999876542 1223344444 557766544443 222 2334443332 35
Q ss_pred cCCcEEEEEec-------CCcchhHHHHh
Q 012698 239 IENGIGVVKLM-------GRYCGFIAMYA 260 (458)
Q Consensus 239 ~~~rv~iVEvM-------GR~~G~lA~~a 260 (458)
+ ++|.++--. -|..||.....
T Consensus 184 ~-~~I~~i~~~~~~~~~~~R~~Gf~~al~ 211 (348)
T 3bil_A 184 A-LPIGYLSGPMDTSTGRERLEDFKAACA 211 (348)
T ss_dssp C-CSEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred C-CeEEEEeCCCCCccHHHHHHHHHHHHH
Confidence 4 678877432 14456766544
No 48
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=67.33 E-value=72 Score=28.82 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=51.8
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-chHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-~~~~ 170 (458)
.+||++...-.-|-...+++++-+.+.+ ++ .+++ +.++... ....
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 49 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNK-AG-YQLL--------------------------------LGYSDYSIEQEE 49 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHH-TS-CEEC--------------------------------CEECTTCHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCCHHHHH
Confidence 4799998766667777788888777753 22 2221 1111111 2234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+.++.|...++|++++.+.+.+-. +.+.+.+.+ +|+|.+=.
T Consensus 50 ~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~--iPvV~~~~ 90 (275)
T 3d8u_A 50 KLLSTFLESRPAGVVLFGSEHSQR----THQLLEASN--TPVLEIAE 90 (275)
T ss_dssp HHHHHHHTSCCCCEEEESSCCCHH----HHHHHHHHT--CCEEEESS
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEEee
Confidence 667888889999999998765432 223333445 55666543
No 49
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=66.88 E-value=6.9 Score=37.95 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh--------HHHHHHHHHHHhhhc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------AQRAINAAHVEAESI 239 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--------a~~ai~~i~~~A~s~ 239 (458)
+..++++.+.+ +.|.++++|||||+..+.. .+.....++++-.||.==-||+. ..++++.+. ...
T Consensus 52 ~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~~---~l~~~~~~~~l~iiP~Gt~N~~ar~lg~~~~~~~a~~~i~---~g~ 124 (304)
T 3s40_A 52 DATKYCQEFAS-KVDLIIVFGGDGTVFECTN---GLAPLEIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLIT---KEH 124 (304)
T ss_dssp HHHHHHHHHTT-TCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHT---TCC
T ss_pred hHHHHHHHhhc-CCCEEEEEccchHHHHHHH---HHhhCCCCCcEEEecCCcHHHHHHHcCCCccHHHHHHHHH---hCC
Confidence 34455555544 8899999999999876432 22222356889999988889987 344555442 233
Q ss_pred CCcEEEEEecCCc
Q 012698 240 ENGIGVVKLMGRY 252 (458)
Q Consensus 240 ~~rv~iVEvMGR~ 252 (458)
.+.+=+.++-+|+
T Consensus 125 ~~~iDlg~v~~~~ 137 (304)
T 3s40_A 125 VKPVDVAKANGQH 137 (304)
T ss_dssp EEEEEEEEETTEE
T ss_pred eEEEEEEEECCEE
Confidence 3456677776654
No 50
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=66.82 E-value=76 Score=28.90 Aligned_cols=92 Identities=2% Similarity=0.029 Sum_probs=53.5
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
..+||++...-..|-...+++++-+.+.+ ++ .++.- .-+........
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 53 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLIL-------------------------------GNAWNNLEKQR 53 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------EECTTCHHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEE-------------------------------EcCCCChHHHH
Confidence 35899999776677777888888777753 23 23220 00111112344
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
+.++.|...++|++++.+.+.+-.. .+.+.+. ..+|+|.+-...+
T Consensus 54 ~~~~~l~~~~vdgii~~~~~~~~~~----~~~l~~~-~~iPvV~~~~~~~ 98 (289)
T 1dbq_A 54 AYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEY-RHIPMVVMDWGEA 98 (289)
T ss_dssp HHHHHHHHTTCSEEEEECSCCCHHH----HHHHHHT-TTSCEEEEECSSC
T ss_pred HHHHHHHhCCCCEEEEEeccCCHHH----HHHHHhc-cCCCEEEEccCCC
Confidence 6678888899999999987764222 2223221 2456776644443
No 51
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=65.80 E-value=5.6 Score=40.04 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.+.|.+|-|||--+++.|..++-. + .+|+|.||-|-
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~P~i~IPTTa 122 (364)
T 3iv7_A 75 EVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---T--ALPIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEcCCc
Confidence 457899999999999999999998889888877653 2 46799999995
No 52
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=64.96 E-value=38 Score=32.08 Aligned_cols=94 Identities=18% Similarity=0.305 Sum_probs=60.7
Q ss_pred CceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---------------CCcccCChhHHhchhh
Q 012698 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---------------KNTINLTPKVVNDIHK 154 (458)
Q Consensus 90 ~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~---------------~~~~~L~~~~v~~~~~ 154 (458)
...+-+++.++|+-+- .++ .+++.. .-++++-.|..=|++ |++-.++.+..+.+..
T Consensus 19 ~~~~~~lIv~ng~~~~---~~~----~~~~~~--~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~~~~~~~ 89 (247)
T 3s4y_A 19 GNLKYCLVILNQPLDN---YFR----HLWNKA--LLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYAT 89 (247)
T ss_dssp -CCCEEEEECSSCCCT---THH----HHHHHC--SCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHHHHHHHH
T ss_pred CCCCEEEEEECCcchH---HHH----HHHhhC--CEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHHHHHHHh
Confidence 3456677777888872 333 333332 347888888766554 3455566666666766
Q ss_pred cCccccccCCC-cchHHHHHHHHHHc------CCcEEEEEcCCCc
Q 012698 155 RGGTILGTSRG-GHDTSKIVDSIQDR------GINQVYIIGGDGT 192 (458)
Q Consensus 155 ~GGs~LGtsR~-~~~~~~i~~~l~~~------~I~~LvvIGGdgs 192 (458)
.|-.++-..-. .-|++++++.+.+. +.+-++++|+.|.
T Consensus 90 ~~~~i~~~peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 90 KGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp TTCEEEECCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred cCCEEEECCCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 66556543211 13788888877654 7899999999997
No 53
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=64.63 E-value=6.5 Score=39.31 Aligned_cols=48 Identities=25% Similarity=0.255 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.+.|.+|-|||--+++.|..++-. + .+|+|.||-|-
T Consensus 74 ~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~p~i~IPTTa 121 (353)
T 3hl0_A 74 EVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---T--DAAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--CCEEEEEECSS
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 357889999999999999999998888888877652 2 47899999996
No 54
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=64.31 E-value=20 Score=33.22 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=52.5
Q ss_pred CcEEEEEccccccccc---------CCcccCChhHHhchhhcCccccccCCC--cchHHHHHHHHHHcCCcEEEEEcCCC
Q 012698 123 VSKILGIDGGYRGFYS---------KNTINLTPKVVNDIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDG 191 (458)
Q Consensus 123 ~~~v~Gi~~G~~GL~~---------~~~~~L~~~~v~~~~~~GGs~LGtsR~--~~~~~~i~~~l~~~~I~~LvvIGGdg 191 (458)
..-++|+-.|..=|++ |++-.++.+..+.+...| .++-.... .-|.+++++...+++.+-++++|+.|
T Consensus 22 ~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~G 100 (212)
T 3l8m_A 22 HEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATG 100 (212)
T ss_dssp TSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred CCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 3578889888887764 456667777777777776 66654433 24799999999999999999999999
Q ss_pred c
Q 012698 192 T 192 (458)
Q Consensus 192 s 192 (458)
.
T Consensus 101 g 101 (212)
T 3l8m_A 101 G 101 (212)
T ss_dssp S
T ss_pred C
Confidence 7
No 55
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=63.66 E-value=6.3 Score=39.53 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+..+++++.+++.+.|.+|-|||--+++.|..++-. + .+|+|.||-|-
T Consensus 76 ~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~--~~p~i~IPTT~ 123 (358)
T 3jzd_A 76 ESARDATARAREAGADCAVAVGGGSTTGLGKAIALE---T--GMPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred HHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 357789999999999999999998888888877653 3 46799999994
No 56
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=63.26 E-value=94 Score=28.67 Aligned_cols=94 Identities=9% Similarity=0.041 Sum_probs=58.8
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccC--CCcch
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS--RGGHD 168 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGts--R~~~~ 168 (458)
+.+||++...-.-|-...+++++.+.+.+ ++ .++. +..+. .....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------------------------~~~~~~~~~~~~ 49 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEE-LK-VDLQ-------------------------------ILAPPGANDVPK 49 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHH-HT-CEEE-------------------------------EECCSSSCCHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHH-hC-cEEE-------------------------------EECCCCcCCHHH
Confidence 46899999887788888899998888764 33 2332 01111 12233
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
..+.++.|...++|++++.+-+.... ....+.+.+.+ ||||.+=..+++
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~g--iPvV~~~~~~~~ 98 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDTAF--SKSLQRANKLN--IPVIAVDTRPKD 98 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSSTT--HHHHHHHHHHT--CCEEEESCCCSC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHCC--CCEEEEcCCCcc
Confidence 45677888889999999988765522 11223333445 567766555544
No 57
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=62.24 E-value=93 Score=28.31 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=57.6
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
.+||++...-.-|-...+++++-+.+.+ ++ .++.-+ -+........+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~~ 62 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE-QG-YSMLLT-------------------------------STNNNPDNERR 62 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCChHHHHH
Confidence 6899999888888888999999888764 33 344311 01111223456
Q ss_pred HHHHHHHcCCcEEEEEcCCCchH-HHHHHHHHHHHcCCCeeEeeeccc
Q 012698 172 IVDSIQDRGINQVYIIGGDGTQK-GAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdgs~~-~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
.++.|...++|++++.+.+.+.. ....+.+.+.+.+ ||||.+=..
T Consensus 63 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~~~~ 108 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMINAS 108 (298)
T ss_dssp HHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEESSC
T ss_pred HHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEEecC
Confidence 78888899999999999875421 1122334444455 556655333
No 58
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=62.12 E-value=7.4 Score=39.46 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
+..+++++.+++.+.|.+|-|||--+++.|..++-. ..+|+|.||-|-..|
T Consensus 93 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~-----~~~p~i~IPTTagtg 143 (387)
T 3uhj_A 93 SEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID-----TGARIVIAPTIASTD 143 (387)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH-----TTCEEEECCSSCCCS
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecCcccCC
Confidence 457889999999999999999998889888877732 257899999995554
No 59
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=60.85 E-value=94 Score=27.90 Aligned_cols=88 Identities=11% Similarity=0.211 Sum_probs=54.5
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~~ 171 (458)
.+||++...-.-|=...+++++.+.+.+ ++ .++.-+ -+........+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~~ 49 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA-RG-YQLLIA-------------------------------SSDDQPDSERQ 49 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 4799999887788888888888887764 33 344311 01111223456
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
.++.+...++|++++.+.+..... ..+.+.+.+ +|+|.+=.
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~~~~ 90 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPPEDD---SYRELQDKG--LPVIAIDR 90 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSCC---HHHHHHHTT--CCEEEESS
T ss_pred HHHHHHHcCCCEEEEecCccccHH---HHHHHHHcC--CCEEEEcc
Confidence 778888999999999988743221 223334445 45665433
No 60
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=59.56 E-value=7 Score=39.66 Aligned_cols=56 Identities=9% Similarity=0.169 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC----------------CCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG----------------LKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~----------------~~i~vvgIPkTIDND 222 (458)
...+++++.+++.+.|.+|-|||--.++.|..++-.....+ -.+|+|.||-|--.|
T Consensus 93 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtg 164 (408)
T 1oj7_A 93 ETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATG 164 (408)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchh
Confidence 45788999999999999999999888988887765322101 347899999996544
No 61
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=58.95 E-value=1.1e+02 Score=28.07 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=55.4
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
+.+||++...-.-|=...+++++.+.+.+ ++ .+++ ++.+ .......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------------------------~~~~-~~~~~~~ 47 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKD-LG-FEVI-------------------------------KIAV-PDGEKTL 47 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-EEEE-------------------------------EEEC-CSHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EeCC-CCHHHHH
Confidence 46899999877778888888888887764 33 2332 0111 1122345
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeec
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (458)
+.++.|...++|++++.+-+.... ..+.+.+.+.+ +|||.+=
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~~ 89 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGYD--MKVIAVD 89 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHTT--CEEEEES
T ss_pred HHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHCC--CcEEEeC
Confidence 677888889999999998776532 22233444455 5566554
No 62
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=58.90 E-value=1.1e+02 Score=28.08 Aligned_cols=87 Identities=8% Similarity=0.057 Sum_probs=53.1
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
..+||++. .-.-|=...+++++.+.+.+ ++ .+++-+. + ....+..
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~-~~~~~~~ 56 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATR-RG-YDVMLSA-------------------------------V-APSRAEK 56 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------E-BTTBCHH
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------C-CCCHHHH
Confidence 45899998 66677778888888887754 33 3333110 1 1111145
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+.++.|...++|++++.+.+.+-. ..+.+.+ .+|+|.+=..+
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~---~iPvV~i~~~~ 98 (289)
T 3k9c_A 57 VAVQALMRERCEAAILLGTRFDTD----ELGALAD---RVPALVVARAS 98 (289)
T ss_dssp HHHHHHTTTTEEEEEEETCCCCHH----HHHHHHT---TSCEEEESSCC
T ss_pred HHHHHHHhCCCCEEEEECCCCCHH----HHHHHHc---CCCEEEEcCCC
Confidence 667778889999999999877542 2233333 45677654443
No 63
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=58.64 E-value=51 Score=31.17 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=51.8
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-chH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-~~~ 169 (458)
..+||++...-.-|-...++.++-+.+.+ ++ .++. +..+... ...
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 105 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATM-YK-YNII--------------------------------LSNSDQNQDKE 105 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECCSHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCChHHH
Confidence 45899998766677788888888877753 33 2332 1011111 123
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
...++.|...++|++++.+.+.+-. ..+.+.+. .+|+|.+-..++
T Consensus 106 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~--~iPvV~~~~~~~ 150 (332)
T 2hsg_A 106 LHLLNNMLGKQVDGIIFMSGNVTEE----HVEELKKS--PVPVVLAASIES 150 (332)
T ss_dssp HHHHHHTSCCSSCCEEECCSSCCHH----HHHHHTTS--SSCEEEESCCCS
T ss_pred HHHHHHHHhCCCcEEEEecCCCCHH----HHHHHHhC--CCCEEEEccccC
Confidence 3566777778999999998765432 22333333 456776644443
No 64
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=58.60 E-value=11 Score=37.55 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
+..+++++.+++++.|.+|-|||--.++.|..++-. + .+|+|.||-|-..|
T Consensus 73 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~--~~p~i~IPTTa~tg 123 (370)
T 1jq5_A 73 NEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADE---L--DAYIVIVPTAASTD 123 (370)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--TCEEEEEESSCCSS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHh---c--CCCEEEeccccCCC
Confidence 356788899999999999999998888888877732 2 47899999994444
No 65
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=57.61 E-value=14 Score=33.38 Aligned_cols=86 Identities=10% Similarity=0.180 Sum_probs=44.4
Q ss_pred CCCcchHHHHHHHHHHcCCcEEEEEcCCCc-hHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcCC
Q 012698 163 SRGGHDTSKIVDSIQDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIEN 241 (458)
Q Consensus 163 sR~~~~~~~i~~~l~~~~I~~LvvIGGdgs-~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~ 241 (458)
-|+++.+.+.++++++.+++.+|.+-|-.. +-+.. +- ....||||+|-... ++. -+|++.....+ +.
T Consensus 43 HRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~-~l~---G~dsLlS~vqm-p~ 110 (166)
T 3oow_A 43 HRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMV--AA-----KTTLPVLGVPVKSS-TLN---GQDSLLSIVQM-PA 110 (166)
T ss_dssp TTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHH--HH-----TCSSCEEEEECCCT-TTT---THHHHHHHHTC-CT
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHH--Hh-----ccCCCEEEeecCcC-CCC---CHHHHHHHhcC-CC
Confidence 344455555555555556666555544332 32221 11 23678999996433 333 23333333333 33
Q ss_pred --cEEEEEec---CCcchhHHHHh
Q 012698 242 --GIGVVKLM---GRYCGFIAMYA 260 (458)
Q Consensus 242 --rv~iVEvM---GR~~G~lA~~a 260 (458)
.|..|=.- |.+++++|...
T Consensus 111 gvpVatV~I~~ag~~nAa~lAa~I 134 (166)
T 3oow_A 111 GIPVATFAIGMAGAKNAALFAASI 134 (166)
T ss_dssp TSCCEECCSTHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCccchHHHHHHHHH
Confidence 35555443 66778877654
No 66
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=57.12 E-value=73 Score=29.00 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=57.7
Q ss_pred CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcch
Q 012698 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (458)
Q Consensus 89 ~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~ 168 (458)
.+..+||++...-.-|-...+++++.+.+.+ ++ .++.-+ -+......
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~ 51 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES-RG-YIGVLF-------------------------------DANADIER 51 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT-TT-CEEEEE-------------------------------ECTTCHHH
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHH
Confidence 3456899999877777788888888877753 33 333311 01111223
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
..+.++.|...++|++++.+-+. . ...+.+.+.+ +|+|.+=..++
T Consensus 52 ~~~~~~~l~~~~vdgiIi~~~~~--~---~~~~~l~~~~--iPvV~i~~~~~ 96 (276)
T 3jy6_A 52 EKTLLRAIGSRGFDGLILQSFSN--P---QTVQEILHQQ--MPVVSVDREMD 96 (276)
T ss_dssp HHHHHHHHHTTTCSEEEEESSCC--H---HHHHHHHTTS--SCEEEESCCCT
T ss_pred HHHHHHHHHhCCCCEEEEecCCc--H---HHHHHHHHCC--CCEEEEecccC
Confidence 45678888999999999999887 2 2333444444 56776644443
No 67
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=57.00 E-value=11 Score=37.97 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-------------CCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTIDND 222 (458)
+..+++++.+++.+.|.+|-|||--+++.|..++-....- .-.+|+|.||-|-..|
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 143 (383)
T 3ox4_A 75 TAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTA 143 (383)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCC
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCch
Confidence 4678999999999999999999988888888776544210 1157899999996554
No 68
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=56.54 E-value=1.4e+02 Score=28.36 Aligned_cols=94 Identities=7% Similarity=0.035 Sum_probs=54.7
Q ss_pred ceEEEEEccCCCC-cchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchH
Q 012698 91 EVHACIVTCGGLC-PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~a-pGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~ 169 (458)
..+||+++.+-.- |=...+++++.+.+.+ ++. ++.-+ -+.......
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~-~g~-~~~~~-------------------------------~~~~~~~~~ 49 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD-LGL-DLRIL-------------------------------YAERDPQNT 49 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH-HTC-EEEEE-------------------------------ECTTCHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH-cCC-eEEEE-------------------------------ECCCCHHHH
Confidence 3589999988766 8888899998888764 342 33311 011111222
Q ss_pred HHHHHHHHH--cCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 170 SKIVDSIQD--RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 170 ~~i~~~l~~--~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
.+.++.+.. .++|++++++ +... ...+.+.+.+. .||||.+=..++++
T Consensus 50 ~~~i~~~i~~~~~vDgiIi~~-~~~~--~~~~~~~~~~~--giPvV~~~~~~~~~ 99 (350)
T 3h75_A 50 LQQARELFQGRDKPDYLMLVN-EQYV--APQILRLSQGS--GIKLFIVNSPLTLD 99 (350)
T ss_dssp HHHHHHHHHSSSCCSEEEEEC-CSSH--HHHHHHHHTTS--CCEEEEEESCCCTT
T ss_pred HHHHHHHHhcCCCCCEEEEeC-chhh--HHHHHHHHHhC--CCcEEEEcCCCChH
Confidence 345555555 6999999997 3332 22233444334 46677765555443
No 69
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=55.30 E-value=1.2e+02 Score=27.43 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=49.4
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-chHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-~~~~ 170 (458)
.+||++...-.-|-...+++++-+.+.+ ++ .+++ +.++... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 47 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADK-LG-YNLV--------------------------------VLDSQNNPAKEL 47 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHH-cC-cEEE--------------------------------EeCCCCCHHHHH
Confidence 4789998766677777888888777754 33 2332 1111111 1223
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
+.++.|...++|++++.+.+.... ..+.+.+.+.+ +|||.+
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~i 88 (271)
T 2dri_A 48 ANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQAN--IPVITL 88 (271)
T ss_dssp HHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CcEEEe
Confidence 556777888999999987654321 11223344445 456655
No 70
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=54.70 E-value=12 Score=37.51 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc---------------CCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR---------------GLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~---------------~~~i~vvgIPkTIDND 222 (458)
...+++++.++++++|.+|-|||--.++.|..++-..... .-.+|+|.||-|--.|
T Consensus 75 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtg 145 (386)
T 1rrm_A 75 TVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTA 145 (386)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCC
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCch
Confidence 4578999999999999999999988898888776544211 1157899999996544
No 71
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=54.45 E-value=87 Score=28.91 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=69.9
Q ss_pred CceEEEEEccCC-----CCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCC
Q 012698 90 DEVHACIVTCGG-----LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR 164 (458)
Q Consensus 90 ~~~~iaIltsGG-----~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR 164 (458)
+..+|||+.... .-|-...+++++.+.+.+ ++ .+++ +.++.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~ 51 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ-HG-YGTQ--------------------------------TTVSN 51 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT-TT-CEEE--------------------------------ECCCC
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCC
Confidence 345899998543 345556677777777653 23 2332 11111
Q ss_pred C-cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc---hh---------HHHHHHH
Q 012698 165 G-GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND---IP---------AQRAINA 231 (458)
Q Consensus 165 ~-~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND---i~---------a~~ai~~ 231 (458)
. .....++++.|...++|++++.+.+.+-. +.+.+.+.+ +|+|.+=..+++. ++ +..+.+.
T Consensus 52 ~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~ 125 (295)
T 3hcw_A 52 NMNDLMDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDES--MPFIVIGKPTSDIDHQFTHIDNDNILASENLTRH 125 (295)
T ss_dssp SHHHHHHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHTT--CCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhCC--CCEEEECCCCccccCCceEEecCcHHHHHHHHHH
Confidence 1 12345678889999999999998765432 223344445 4566654444432 22 2334443
Q ss_pred HHHHhhhcCCcEEEEEecC-------CcchhHHHHh
Q 012698 232 AHVEAESIENGIGVVKLMG-------RYCGFIAMYA 260 (458)
Q Consensus 232 i~~~A~s~~~rv~iVEvMG-------R~~G~lA~~a 260 (458)
+.. ..+ +++.++--.. |..||..+..
T Consensus 126 L~~--~G~-~~I~~i~~~~~~~~~~~R~~Gf~~al~ 158 (295)
T 3hcw_A 126 VIE--QGV-DELIFITEKGNFEVSKDRIQGFETVAS 158 (295)
T ss_dssp HHH--HCC-SEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHH--cCC-ccEEEEcCCccchhHHHHHHHHHHHHH
Confidence 332 354 5788775332 4456665443
No 72
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=53.93 E-value=1.2e+02 Score=28.49 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=54.6
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-chH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-~~~ 169 (458)
..+||++...-.-|-...++.++.+.+.+ ++. ++. +-++... ...
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~l~--------------------------------~~~~~~~~~~~ 50 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKS-VGL-PYV--------------------------------PLTTEGSSEKG 50 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-HTC-CEE--------------------------------EEECTTCHHHH
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EecCCCCHHHH
Confidence 45899999766677777888888777753 232 221 1111111 223
Q ss_pred HHHHHHHHHcC--CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 170 SKIVDSIQDRG--INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 170 ~~i~~~l~~~~--I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
...++.|...+ +|++++.+.+... ...+.+.+.+.+ +|+|.+-...++
T Consensus 51 ~~~i~~l~~~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~~~~~ 100 (332)
T 2rjo_A 51 IADIRALLQKTGGNLVLNVDPNDSAD--ARVIVEACSKAG--AYVTTIWNKPKD 100 (332)
T ss_dssp HHHHHHHHHHTTTCEEEEECCSSHHH--HHHHHHHHHHHT--CEEEEESCCCTT
T ss_pred HHHHHHHHHCCCCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEECCCCCc
Confidence 45677777888 9999998876432 112233343444 567776555543
No 73
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=52.82 E-value=1.2e+02 Score=27.93 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=54.6
Q ss_pred ceEEEEEccC-----CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC
Q 012698 91 EVHACIVTCG-----GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG 165 (458)
Q Consensus 91 ~~~iaIltsG-----G~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~ 165 (458)
..+||++... -.-|=...+++++.+.+.+ ++ .+++ +..+..
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~ 67 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RG-YSTR--------------------------------MTVSEN 67 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------ECCCSS
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCC
Confidence 4589999876 4556667778888777754 33 2332 111111
Q ss_pred -cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 166 -GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 166 -~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
.....++.+.|...++|++++.+.+.+-. ..+.+.+.+ +|||.+=..++
T Consensus 68 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~i~~~~~ 117 (305)
T 3huu_A 68 SGDLYHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEFK--VPYLIVGKSLN 117 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHTT--CCEEEESCCCS
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHcC--CCEEEECCCCc
Confidence 12345678889999999999998775532 223344445 55666544443
No 74
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=52.58 E-value=42 Score=32.41 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCc-ccCChhHHhchhhcCccccccCC---CcchHHHHHHHHHHcC
Q 012698 105 GLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSR---GGHDTSKIVDSIQDRG 180 (458)
Q Consensus 105 GmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGtsR---~~~~~~~i~~~l~~~~ 180 (458)
--+...+.+++.+.+..+..+|.-+.. +..+ ......-.+.+...|+++..... ...++...+..+++.+
T Consensus 125 ~~~~~~~~~~~~l~~~~g~~~iaii~~------~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~ 198 (392)
T 3lkb_A 125 SYSEQVVALLEYIAREKKGAKVALVVH------PSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAG 198 (392)
T ss_dssp CHHHHHHHHHHHHHHHCTTCEEEEEEC------SSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEEe------CCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcC
Confidence 334556666777654335445544432 1111 11111222334556776655433 2346777888899999
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 181 INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 181 I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
.|++|+.+-+ ..+..+.+.+++.|+++++++...+.
T Consensus 199 ~dav~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~~~ 234 (392)
T 3lkb_A 199 VEYVVHQNVA---GPVANILKDAKRLGLKMRHLGAHYTG 234 (392)
T ss_dssp CCEEEEESCH---HHHHHHHHHHHHTTCCCEEEECGGGC
T ss_pred CCEEEEecCc---chHHHHHHHHHHcCCCceEEEecCcc
Confidence 9999987633 33455667777889999998875443
No 75
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=52.31 E-value=1.1e+02 Score=28.46 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=57.9
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
+.+|||+...-.-|=...+++++.+.+.+ ++ .++.- ..+........
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 49 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQE-AG-YKTDL-------------------------------QYADDDIPNQL 49 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHH-TT-CEEEE-------------------------------EECTTCHHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------eeCCCCHHHHH
Confidence 46899999887788888899998888764 33 23321 11111122344
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
+.++.|...++|++++.+-+.... ....+.+.+.+ ||||.+-..++
T Consensus 50 ~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~g--iPvV~~~~~~~ 95 (330)
T 3uug_A 50 SQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQG--IKVIAYDRLIR 95 (330)
T ss_dssp HHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHTT--CEEEEESSCCC
T ss_pred HHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHCC--CCEEEECCCCC
Confidence 677888889999999998775322 12223344444 56777655543
No 76
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=51.13 E-value=16 Score=36.54 Aligned_cols=56 Identities=7% Similarity=0.074 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH------c-------CCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ------R-------GLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~------~-------~~~i~vvgIPkTIDND 222 (458)
...+++++.++++++|.+|-|||--+++.|..++-.... + .-.+|+|.||-|-..|
T Consensus 79 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtg 147 (387)
T 3bfj_A 79 TNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTA 147 (387)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcc
Confidence 457899999999999999999999889888877653211 1 0257899999996444
No 77
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=49.70 E-value=1.8e+02 Score=27.79 Aligned_cols=100 Identities=15% Similarity=0.083 Sum_probs=64.1
Q ss_pred ceEEEEEc-cCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cch
Q 012698 91 EVHACIVT-CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHD 168 (458)
Q Consensus 91 ~~~iaIlt-sGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~ 168 (458)
.+||+|+| |..+-| ....+.++ ..++-++-=+.|=.-.+-++++.+++-.....++.+-.||.- ..+
T Consensus 3 ~Mki~IvtDSt~dl~----------~e~~~~~~-I~vvPl~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSqps~~~ 71 (285)
T 3lup_A 3 AMKLALITDTSAYLP----------EAIENHED-VYVLDIPIIIDGKTYIEGQNLTLDQYYDKLAASKELPKTSQPSLAE 71 (285)
T ss_dssp CCCEEEEEETTBCCC----------TTTTTCTT-EEEECCCEESSSSCCCBTTTBCHHHHHHHHHHCSSCCEECCCCHHH
T ss_pred CCCEEEEEECCCCCC----------HHHHHHCC-eEEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCCCCHHH
Confidence 46899999 666666 11112233 244432222222211223578999888888777777778775 457
Q ss_pred HHHHHHHHHHcCCcEEEEEc----CCCchHHHHHHHH
Q 012698 169 TSKIVDSIQDRGINQVYIIG----GDGTQKGAAVIYE 201 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIG----Gdgs~~~a~~L~~ 201 (458)
+.++.+.+.+.+-|.+++|. =.||+.+|...++
T Consensus 72 ~~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA~~a~~ 108 (285)
T 3lup_A 72 LDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIE 108 (285)
T ss_dssp HHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHH
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCchhHHHHHHHHHHH
Confidence 88888989888999888875 4677777776554
No 78
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=49.05 E-value=87 Score=28.70 Aligned_cols=93 Identities=9% Similarity=0.032 Sum_probs=49.4
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
..+||++...-.-|=...++.++.+.+.+ ++ .++.-..+ +........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~~------------------------------~~~~~~~~~ 55 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHK-NG-YNLIIVYS------------------------------GSADPEEQK 55 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TT-CEEEEEC----------------------------------------
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEEEeC------------------------------CCCCHHHHH
Confidence 45899999877778888888888877753 33 23321100 000011123
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
+.++.|...++|++++.+.+.+-. ..+.+.+. .+|+|.+-...++
T Consensus 56 ~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~--~iPvV~~~~~~~~ 100 (290)
T 3clk_A 56 HALLTAIERPVMGILLLSIALTDD----NLQLLQSS--DVPYCFLSMGFDD 100 (290)
T ss_dssp CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEESCC--C
T ss_pred HHHHHHHhcCCCEEEEecccCCHH----HHHHHHhC--CCCEEEEcCCCCC
Confidence 456677788999999998765421 22333333 4667776544443
No 79
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=48.00 E-value=38 Score=32.85 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=65.9
Q ss_pred eEEEEEc-cCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc-CCcccCChhHHhchhhcC-ccccccCCC-cc
Q 012698 92 VHACIVT-CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS-KNTINLTPKVVNDIHKRG-GTILGTSRG-GH 167 (458)
Q Consensus 92 ~~iaIlt-sGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~-~~~~~L~~~~v~~~~~~G-Gs~LGtsR~-~~ 167 (458)
.||+|+| |+.+-| .... +.++. .++-++-=+.|=.- .+-++++.+++-.+...+ +....||.- ..
T Consensus 3 ~ki~IvtDSt~dl~------~e~~----~~~~I-~vvPl~v~~~~~~y~~D~~di~~~efy~~~~~~~~~~p~TSqps~~ 71 (297)
T 3nyi_A 3 AMYKIVSDSACDLS------KEYL----EKHDV-TIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVE 71 (297)
T ss_dssp -CCEEEEEGGGCCC------HHHH----HHHTE-EEECCEEESSSSCEEEBTTTBCHHHHHHHHHHCTTCCCEEECCCHH
T ss_pred CCEEEEEecCCCCC------HHHH----HhCCe-EEEEEEEEECCEEEecCCCCCCHHHHHHHHHhCCCCCceecCCCHH
Confidence 4688998 666666 2222 22342 34322221222111 122578999888887766 567778775 35
Q ss_pred hHHHHHHHHHHcCCcEEEEEc----CCCchHHHHHHHHHHH-Hc-CCCeeEe
Q 012698 168 DTSKIVDSIQDRGINQVYIIG----GDGTQKGAAVIYEEIR-QR-GLKVAVA 213 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIG----Gdgs~~~a~~L~~~~~-~~-~~~i~vv 213 (458)
++.++.+.+.+.+ +.+++|. =.||+.+|...++.+. ++ +.+|.||
T Consensus 72 ~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~Vi 122 (297)
T 3nyi_A 72 SYADVFRSFVEQG-FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI 122 (297)
T ss_dssp HHHHHHHHHHTTT-CCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHHCC-CeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 7888888888888 7777763 5788888888876653 33 3444443
No 80
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=47.80 E-value=1.6e+02 Score=26.59 Aligned_cols=124 Identities=12% Similarity=0.026 Sum_probs=68.7
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
..+||++...-.-|=...++.++.+.+.+ ++ .++.-+ .+. ......
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~-~~~~~~ 50 (280)
T 3gyb_A 5 TQLIAVLIDDYSNPWFIDLIQSLSDVLTP-KG-YRLSVI-------------------------------DSL-TSQAGT 50 (280)
T ss_dssp CCEEEEEESCTTSGGGHHHHHHHHHHHGG-GT-CEEEEE-------------------------------CSS-SSCSSS
T ss_pred cCEEEEEeCCCCChHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCC-CchHHH
Confidence 46899999887788888899999888754 33 344311 111 112223
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc-cC-chh---------HHHHHHHHHHHhhhc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI-DN-DIP---------AQRAINAAHVEAESI 239 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI-DN-Di~---------a~~ai~~i~~~A~s~ 239 (458)
+.++.|...++|+++ ++.+.... .+.+ ..||||.+=..+ ++ +++ ...+.+.+.. ..
T Consensus 51 ~~~~~l~~~~vdgiI-~~~~~~~~---~~~~------~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~G- 117 (280)
T 3gyb_A 51 DPITSALSMRPDGII-IAQDIPDF---TVPD------SLPPFVIAGTRITQASTHDSVANDDFRGAEIATKHLID--LG- 117 (280)
T ss_dssp CHHHHHHTTCCSEEE-EESCC-----------------CCCEEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHH--TT-
T ss_pred HHHHHHHhCCCCEEE-ecCCCChh---hHhh------cCCCEEEECCCCCCCCCCCEEEechHHHHHHHHHHHHH--CC-
Confidence 466778889999999 88766532 2211 246677665444 21 222 2233333322 24
Q ss_pred CCcEEEEEecC-----CcchhHHHHhh
Q 012698 240 ENGIGVVKLMG-----RYCGFIAMYAT 261 (458)
Q Consensus 240 ~~rv~iVEvMG-----R~~G~lA~~aa 261 (458)
++++.++--.. |..||......
T Consensus 118 ~~~i~~i~~~~~~~~~R~~gf~~~l~~ 144 (280)
T 3gyb_A 118 HTHIAHLRVGSGAGLRRFESFEATMRA 144 (280)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCchHHHHHHHHHHHHHH
Confidence 35677775433 55677665443
No 81
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=46.99 E-value=20 Score=35.37 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
+..+++++.++++++ |.++-+||--.+..|..++-. +...+|+|.||-|
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~---~~rgip~i~IPTT 120 (343)
T 3clh_A 69 HSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSI---YFRGIDFINIPTT 120 (343)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHH---hccCCCEEEeCCc
Confidence 457899999999999 999999998888877766532 2235789999999
No 82
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=46.64 E-value=19 Score=35.67 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
...+++++.++++++ |.+|-|||--.++.|..++-. +.-.+|+|.||-|.
T Consensus 74 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~---~~rgip~i~IPTT~ 126 (354)
T 1xah_A 74 EQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAAT---LLRGVHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECST
T ss_pred HHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHH---hccCCCEEEECCcc
Confidence 457899999999999 999999998888877766532 23357899999995
No 83
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=46.59 E-value=1.6e+02 Score=26.76 Aligned_cols=69 Identities=13% Similarity=0.035 Sum_probs=46.7
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCC--Ccch
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR--GGHD 168 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR--~~~~ 168 (458)
..+||++...-.-|-...++.++.+.+.+ ++. ++.- +.+.. ....
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 51 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEK-QGV-NLRV-------------------------------LEAGGYPNKSR 51 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHH-HTC-EEEE-------------------------------EECSSTTCHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCC-eEEE-------------------------------EcCCCCCCHHH
Confidence 46899999877778888888888887764 332 3321 11111 1123
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCc
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGT 192 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs 192 (458)
..+.++.+...++|++++.+.+..
T Consensus 52 ~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 52 QEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCChh
Confidence 456778888899999999987655
No 84
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=46.37 E-value=1.7e+02 Score=26.40 Aligned_cols=65 Identities=6% Similarity=-0.042 Sum_probs=42.6
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
..+||++...-.-|=...++.++...+.+ ++ .++.- .-+........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 54 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALA-HG-YQVLI-------------------------------GNSDNDIKKAQ 54 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CCEEE-------------------------------EECTTCHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHH-CC-CEEEE-------------------------------EeCCCCHHHHH
Confidence 35799999876777788888888777754 33 23320 01111123345
Q ss_pred HHHHHHHHcCCcEEEEEc
Q 012698 171 KIVDSIQDRGINQVYIIG 188 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIG 188 (458)
+.++.+...++|++++.+
T Consensus 55 ~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTA 72 (277)
T ss_dssp HHHHHHHHTTCSEEEECG
T ss_pred HHHHHHHhCCCCEEEEec
Confidence 778888999999999988
No 85
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=45.88 E-value=1.8e+02 Score=26.54 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=51.7
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++...-.-|-...+++++.+.+.+ ++ .++. +-.+.. ....
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~ 53 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEK-NG-YRIL--------------------------------LCNTESDLARS 53 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 45899999766667777788888777753 23 2332 001111 1223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
...++.|...++|++++.+.+.+-. ..+.+. .+ +|+|.+=..+
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~-~~--iPvV~~~~~~ 96 (285)
T 3c3k_A 54 RSCLTLLSGKMVDGVITMDALSELP----ELQNII-GA--FPWVQCAEYD 96 (285)
T ss_dssp HHHTHHHHTTCCSEEEECCCGGGHH----HHHHHH-TT--SSEEEESSCC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHh-cC--CCEEEEcccc
Confidence 4567778889999999988654321 223333 34 5677664433
No 86
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=45.55 E-value=2e+02 Score=27.02 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=46.7
Q ss_pred CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcch
Q 012698 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (458)
Q Consensus 89 ~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~ 168 (458)
.+..||||++.- .=|.++++-+|+...+.+ .+ +.++.-++++ +.+.-| ....
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~-~G-------------~~~g~nv~~~------~~~a~g-------d~~~ 57 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLKA-KG-------------YEEGKNLEFD------YKTAQG-------NPAI 57 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHHH-TT-------------CCBTTTEEEE------EEECTT-------CHHH
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHHh-hC-------------cccCCcEEEE------EEeCCC-------CHHH
Confidence 456899999873 679999999999988864 22 1222212221 111112 1124
Q ss_pred HHHHHHHHHHcCCcEEEEEc
Q 012698 169 TSKIVDSIQDRGINQVYIIG 188 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIG 188 (458)
...+++.|...+.|.+|.||
T Consensus 58 ~~~~~~~l~~~~~DlIiai~ 77 (302)
T 3lkv_A 58 AVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp HHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHhcCCcEEEEcC
Confidence 66888999999999988876
No 87
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=45.14 E-value=73 Score=29.44 Aligned_cols=127 Identities=17% Similarity=0.071 Sum_probs=71.9
Q ss_pred ceEEEEEccCCCCcchh-HHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchH
Q 012698 91 EVHACIVTCGGLCPGLN-TVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmN-avIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~ 169 (458)
..+||++...-.-|-.. .+++++.+.+.+ ++ .+++-+ -+.......
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 59 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANA-NG-KTILIA-------------------------------NTGGSSERE 59 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHH
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCChHHH
Confidence 35899998776667777 888888887764 33 344311 011111234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc--hh---------HHHHHHHHHHHhhh
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND--IP---------AQRAINAAHVEAES 238 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND--i~---------a~~ai~~i~~~A~s 238 (458)
.+.++.|...++|++++.+-+..- ..+.+.+. .+|+|.+=..+++. ++ ...+.+.+.. ..
T Consensus 60 ~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~~~~--~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~G 130 (301)
T 3miz_A 60 VEIWKMFQSHRIDGVLYVTMYRRI-----VDPESGDV--SIPTVMINCRPQTRELLPSIEPDDYQGARDLTRYLLE--RG 130 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEEEE-----CCCCCTTC--CCCEEEEEEECSSTTSSCEEEECHHHHHHHHHHHHHT--TT
T ss_pred HHHHHHHHhCCCCEEEEecCCccH-----HHHHHHhC--CCCEEEECCCCCCCCCCCEEeeChHHHHHHHHHHHHH--cC
Confidence 567888999999999999876443 11222223 45677665444432 22 2233333322 34
Q ss_pred cCCcEEEEEec-------CCcchhHHHHh
Q 012698 239 IENGIGVVKLM-------GRYCGFIAMYA 260 (458)
Q Consensus 239 ~~~rv~iVEvM-------GR~~G~lA~~a 260 (458)
+ ++|.++--. -|..||.....
T Consensus 131 ~-~~I~~i~~~~~~~~~~~R~~Gf~~al~ 158 (301)
T 3miz_A 131 H-RRIGYIRLNPILLGAELRLDAFRRTTS 158 (301)
T ss_dssp C-CSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred C-CeEEEEecCccchhHHHHHHHHHHHHH
Confidence 3 578777532 24556665443
No 88
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=45.04 E-value=16 Score=36.87 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHcC---CcEEEEEcCCCchHHHHHHHHHHHHc-------------CCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRG---INQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~---I~~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTIDND 222 (458)
...+++++.+++.+ .|.+|-|||--++..|..++-..... .-.+|+|.||-|-..|
T Consensus 93 ~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagtg 164 (375)
T 3rf7_A 93 VQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGTG 164 (375)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSSC
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCccc
Confidence 45788999999998 99999999988899888776543100 1147899999885444
No 89
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=44.74 E-value=47 Score=29.61 Aligned_cols=68 Identities=25% Similarity=0.364 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHHc-C----CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc------------ccCchhHHHH
Q 012698 166 GHDTSKIVDSIQDR-G----INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT------------IDNDIPAQRA 228 (458)
Q Consensus 166 ~~~~~~i~~~l~~~-~----I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT------------IDNDi~a~~a 228 (458)
+.|+..+.+.|.+. . =|-++|=||-|=+..|....++ .|+.++|+|+-|- ++.|-++-..
T Consensus 60 ~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~e---lg~~i~v~glAK~~e~l~~~~~~i~L~~~s~~l~l 136 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKKEETVVFENREIHLPHDHPVLRL 136 (159)
T ss_dssp -CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHHH---TTCCCCEEEEC----CEEETTEEECCCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCccEEEEEcCCcEEEeCCCeeecCCCCHHHHH
Confidence 36787777777765 2 4777777999999888877654 5888999999992 1122225566
Q ss_pred HHHHHHHh
Q 012698 229 INAAHVEA 236 (458)
Q Consensus 229 i~~i~~~A 236 (458)
+..++++|
T Consensus 137 lqriRDEa 144 (159)
T 2nrr_A 137 LVQIRDET 144 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76676665
No 90
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=44.24 E-value=31 Score=31.48 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=22.6
Q ss_pred CeeEeeecccccCchhHHHHHHHHHHHhhhcCCcEEEEEe-----cCCcchhHHHHh
Q 012698 209 KVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVVKL-----MGRYCGFIAMYA 260 (458)
Q Consensus 209 ~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~rv~iVEv-----MGR~~G~lA~~a 260 (458)
..||||||---. .+ .-+|++...... +.+|-+.=+ =+.+++.+|+..
T Consensus 100 ~~PVIGVPv~s~-~l---~G~DsLlSivQM-P~GvpVaTvaig~~ga~NAallA~qI 151 (181)
T 4b4k_A 100 NLPVIGVPVQSK-AL---NGLDSLLSIVQM-PGGVPVATVAIGKAGSTNAGLLAAQI 151 (181)
T ss_dssp CSCEEEEECCCT-TT---TTHHHHHHHHTC-CTTCCCEECCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCC-Cc---cchhhHHHHHhC-CCCCceEEEecCCccHHHHHHHHHHH
Confidence 578999986311 12 233444333333 455544433 124456666543
No 91
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=44.06 E-value=18 Score=36.68 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH--------c-----CCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ--------R-----GLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~--------~-----~~~i~vvgIPkTIDND 222 (458)
...+++++.+++.++|.+|-|||--+++.|..++-.... . .-.+|+|.||-|-..|
T Consensus 88 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 156 (407)
T 1vlj_A 88 SKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATG 156 (407)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcc
Confidence 457889999999999999999999889988877653210 0 1357899999996544
No 92
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=43.99 E-value=14 Score=36.88 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTIDND 222 (458)
...+++++.+++.+.|.+|-|||--.++.|..++-.... ..-.+|+|.||-|-..+
T Consensus 85 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtg 153 (371)
T 1o2d_A 85 DNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTG 153 (371)
T ss_dssp HHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchh
Confidence 457888999999999999999999889888877654321 00357899999996665
No 93
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=43.91 E-value=2.1e+02 Score=26.88 Aligned_cols=68 Identities=6% Similarity=0.181 Sum_probs=44.2
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++...-.-|-...+++++-+.+.+ ++ .+++ +..+.. ....
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 103 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLI--------------------------------LGNAWNNLEKQ 103 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 35899998766667777788888777753 23 2332 111111 1233
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGT 192 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs 192 (458)
...++.|...++|++++.+.+.+
T Consensus 104 ~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 104 RAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCC
T ss_pred HHHHHHHHcCCCCEEEEeCCCCC
Confidence 45678888899999999987654
No 94
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=43.44 E-value=33 Score=30.97 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=41.3
Q ss_pred CCCcchHHHHHHHHHHcCCcEEEEEcCCCc-hHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcCC
Q 012698 163 SRGGHDTSKIVDSIQDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIEN 241 (458)
Q Consensus 163 sR~~~~~~~i~~~l~~~~I~~LvvIGGdgs-~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~ 241 (458)
-|+++.+.+++++.++.+++.+|.+-|-.. +-+.. +- ....||||+|-. ..++.- +|++..... ++.
T Consensus 44 HR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~-~~~l~G---~dsLlS~vq-mp~ 111 (169)
T 3trh_A 44 HRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTI--AA-----HTLKPVIGVPMA-GGSLGG---LDALLSTVQ-MPG 111 (169)
T ss_dssp TTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHH--HH-----TCSSCEEEEECC-CSTTTT---HHHHHHHHC-CCT
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----cCCCCEEEeecC-CCCCCC---HHHHHHhhc-CCC
Confidence 355555566666666666665555543332 22221 11 236789999954 233332 333333333 244
Q ss_pred cE--EEEEe---cCCcchhHHHHh
Q 012698 242 GI--GVVKL---MGRYCGFIAMYA 260 (458)
Q Consensus 242 rv--~iVEv---MGR~~G~lA~~a 260 (458)
++ ..|=. =|.+++++|...
T Consensus 112 GvPVatV~I~~a~~~nAa~lAa~I 135 (169)
T 3trh_A 112 GVPVACTAIGKAGAKNAAILAAQI 135 (169)
T ss_dssp TSCCEECCSTHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCccchHHHHHHHHH
Confidence 43 33322 234666666543
No 95
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=42.71 E-value=12 Score=37.01 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
+..+++ +.+++.+.|.+|-|||--.++.|..++ +. + .+|+|.||-|...|
T Consensus 76 ~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~--~~p~i~IPTT~~tg 125 (354)
T 3ce9_A 76 DEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--R--KLPFISVPTSTSND 125 (354)
T ss_dssp HHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--H--TCCEEEEESCCSSG
T ss_pred HHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--c--CCCEEEecCcccCC
Confidence 346677 778888999999999988888888777 33 2 46799999997654
No 96
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=41.94 E-value=2e+02 Score=26.15 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=53.7
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTS 170 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~~ 170 (458)
.+||++...-.-|-...+++++.+.+.+ ++..++. +-++.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~~~~ 49 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLL--------------------------------MNDSQNDQSKQN 49 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHHHHH
Confidence 5799998766667777888888777753 2210221 111111 12234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
..++.+...++|++++.+.+.+.. ....+.+.+.+ +|||.+-...+
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~~ 95 (309)
T 2fvy_A 50 DQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQN--VPVVFFNKEPS 95 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTTT--CCEEEESSCCC
T ss_pred HHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHCC--CcEEEecCCCC
Confidence 567788889999999988766421 12223344444 56776644433
No 97
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=41.92 E-value=2.3e+02 Score=26.71 Aligned_cols=222 Identities=9% Similarity=-0.011 Sum_probs=0.0
Q ss_pred CCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcch
Q 012698 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (458)
Q Consensus 89 ~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~ 168 (458)
.+..+||++...-.-|-...++.++.+.+.+ .+.++. +.-+.. ...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--~g~~~~-------------------------------~~~~~~-~~~ 107 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKA--AGYQML-------------------------------VAEANS-VQA 107 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHH--HTCEEE-------------------------------EEECCS-HHH
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHH--CCCEEE-------------------------------EECCCC-hHH
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchh-------HHHHHHHHHHHhhhcCC
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP-------AQRAINAAHVEAESIEN 241 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~-------a~~ai~~i~~~A~s~~~ 241 (458)
..+.++.|...++|++++.+- .+.+.+.+++ +|.+=...+++-. ..-+-.....=...-++
T Consensus 108 ~~~~~~~l~~~~vdGiIi~~~----------~~~~~~~~iP--vV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~ 175 (333)
T 3jvd_A 108 QDVVMESLISIQAAGIIHVPV----------VGSIAPEGIP--MVQLTRGELGPGFPRVLCDDEAGFFQLTESVLGGSGM 175 (333)
T ss_dssp HHHHHHHHHHHTCSEEEECCC----------TTCCC-CCSC--EEEECC----CCSCEEEECHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHhCCCCEEEEcch----------HHHHhhCCCC--EEEECccCCCCCCCEEEEChHHHHHHHHHHHHHCCCC
Q ss_pred cEEEEEecC-------CcchhHHHHhhcccCCCceEecCC-CCCCccchhhHHHHHHHHHHhCC-cEEEEEeCCCCcchh
Q 012698 242 GIGVVKLMG-------RYCGFIAMYATLGSRDVDCCLIPE-SPFYLEGEGGLYEFIEKRLKENG-HMVIVIAEGAGQDLL 312 (458)
Q Consensus 242 rv~iVEvMG-------R~~G~lA~~aaLA~~~ad~ilIPE-~~~~l~~~~~~~~~i~~r~~~~~-~~vVvVaEGa~~~~~ 312 (458)
++.++--.- |..||....... +.+ ++-+ ..++.+ .-.+.+++.++... -+|+..+...
T Consensus 176 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~---g~~--~~~~~~~~~~~---~~~~~~~~ll~~~~~~ai~~~nd~~----- 242 (333)
T 3jvd_A 176 NIAALVGEESLSTTQERMRGISHAASIY---GAE--VTFHFGHYSVE---SGEEMAQVVFNNGLPDALIVASPRL----- 242 (333)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHT---TCE--EEEEECCSSHH---HHHHHHHHHHHTCCCSEEEECCHHH-----
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHC---CCC--EEEecCCCCHH---HHHHHHHHHhcCCCCcEEEECCHHH-----
Q ss_pred HHHHhhhccccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 012698 313 AESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVA 390 (458)
Q Consensus 313 ~~~~~~~~~~D~~G~~~l~~i~~~L~~~I~e~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~Av~~~~~ 390 (458)
+.-+.+.+++.-..--.-...+++-+.....-..+|-+.=..-...+|..|++.+.+
T Consensus 243 ---------------------A~g~~~al~~~G~~vP~disvig~D~~~~~~~~~p~lttv~~~~~~~g~~Av~~L~~ 299 (333)
T 3jvd_A 243 ---------------------MAGVMRAFTRLNVRVPHDVVIGGYDDPEWYSFVGAGITTFVPPHEEMGKEAVRLLVD 299 (333)
T ss_dssp ---------------------HHHHHHHHHHTTCCTTTTCEEEEESCCGGGGGSTTSCEEEECCHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHcCCCCCCceEEEEECChHHHHhcCCCceEEecCHHHHHHHHHHHHHH
No 98
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=40.72 E-value=39 Score=30.63 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCeeEeeecccccCchhHHHHHHHHHHHhhhcCCcE--EEEEe---cCCcchhHHHHh
Q 012698 208 LKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGI--GVVKL---MGRYCGFIAMYA 260 (458)
Q Consensus 208 ~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~rv--~iVEv---MGR~~G~lA~~a 260 (458)
...||||+|-. ..++.- +|++..... ++.+| ..|=. =|.++|++|...
T Consensus 89 t~~PVIgVP~~-~~~l~G---~dsLlS~vq-mP~GvPVatV~I~~a~~~nAa~lAa~I 141 (174)
T 3kuu_A 89 TLVPVLGVPVQ-SAALSG---VDSLYSIVQ-MPRGIPVGTLAIGKAGAANAALLAAQI 141 (174)
T ss_dssp CSSCEEEEEEC-CTTTTT---HHHHHHHHT-CCTTSCCEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEeeCC-CCCCCC---HHHHHHhhh-CCCCCeeEEEEeCCccchHHHHHHHHH
Confidence 35789999854 223332 233333333 24443 44433 245567776543
No 99
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=40.65 E-value=46 Score=25.44 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=39.6
Q ss_pred cccCCCcchHHHHHHHHHHcCCc---------EEEEEcCCCchHHHHHHHHHHHHcCCCe
Q 012698 160 LGTSRGGHDTSKIVDSIQDRGIN---------QVYIIGGDGTQKGAAVIYEEIRQRGLKV 210 (458)
Q Consensus 160 LGtsR~~~~~~~i~~~l~~~~I~---------~LvvIGGdgs~~~a~~L~~~~~~~~~~i 210 (458)
+|+-+...+-+++.+.|+..++. +-|.+|.+.+-..|..+.+.+++.|++-
T Consensus 14 vGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~ 73 (81)
T 1uta_A 14 CGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTN 73 (81)
T ss_dssp CCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCc
Confidence 34545566788889999988887 4577888888888998888888777753
No 100
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=39.91 E-value=2.1e+02 Score=25.86 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=51.9
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-chHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-~~~~ 170 (458)
.+||++...-.-|-...++.++.+.+.+ ++ .++. +-.+... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 48 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQ-LG-YEAT--------------------------------IFDSQNDTAKES 48 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EeCCCCCHHHHH
Confidence 4799998766667777888888777753 22 2322 1111111 2234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+.++.|...++|++++.+.+.+.. ....+.+.+.+ +|+|.+-..+
T Consensus 49 ~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~ 93 (290)
T 2fn9_A 49 AHFDAIIAAGYDAIIFNPTDADGS--IANVKRAKEAG--IPVFCVDRGI 93 (290)
T ss_dssp HHHHHHHHTTCSEEEECCSCTTTT--HHHHHHHHHTT--CCEEEESSCC
T ss_pred HHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHCC--CeEEEEecCC
Confidence 567777888999999998764421 11223344445 4566654433
No 101
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=39.04 E-value=62 Score=28.19 Aligned_cols=52 Identities=31% Similarity=0.529 Sum_probs=37.2
Q ss_pred chHHHHHHHHH-HcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCCeeEeeecccccC
Q 012698 167 HDTSKIVDSIQ-DRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDN 221 (458)
Q Consensus 167 ~~~~~i~~~l~-~~~I~~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDN 221 (458)
-|..-+++.++ ..++|.++++-||+-|.-+. +.++++ |..+-++|.|++...
T Consensus 94 ~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~~s~ 147 (165)
T 2qip_A 94 WDVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRLTSQ 147 (165)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGGSCH
T ss_pred ccHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCcChH
Confidence 35555555443 25799999999999987644 445564 999989998876544
No 102
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=39.02 E-value=63 Score=30.83 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeee
Q 012698 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (458)
.+.+.++++.|++.+.|++++-.-.-+. ....|.+ .+++||+||
T Consensus 85 ~~~l~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~-----~~~iPvigi 128 (268)
T 3s81_A 85 YRYLERYLHMLEDAGAECIVIPCNTAHY-WFDDLQN-----VAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHHHHTTCSEEECSCSGGGG-GHHHHHH-----HCSSEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHH-----HCCCCEEcc
Confidence 3567788999999999988776654333 3333332 357899986
No 103
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=38.88 E-value=22 Score=35.87 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHcC--C---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRG--I---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~--I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
+..+++.+.+.+++ + |.+|-+||--.++.|..++-.. .++ +++|.||-|
T Consensus 87 ~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTT 140 (393)
T 1sg6_A 87 QTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTT 140 (393)
T ss_dssp HHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCc
Confidence 45789999999999 9 9999999988888777665322 344 689999999
No 104
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=38.46 E-value=51 Score=24.88 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=37.6
Q ss_pred cccCCCcchHHHHHHHHHHcCCc---------EEEEEcCCCchHHHHHHHHHHHHcCCC
Q 012698 160 LGTSRGGHDTSKIVDSIQDRGIN---------QVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (458)
Q Consensus 160 LGtsR~~~~~~~i~~~l~~~~I~---------~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (458)
+|+-+...+.++..+.|++.+++ +-|.+|.+.+...|..+.+.+++.|++
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 34545556778888888888877 456778888888888888888777775
No 105
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=37.11 E-value=30 Score=31.31 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=39.3
Q ss_pred ccccCCCcchHHHHHHHHHHcCCcEEEEE-cCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 159 ILGTSRGGHDTSKIVDSIQDRGINQVYII-GGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 159 ~LGtsR~~~~~~~i~~~l~~~~I~~LvvI-GGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
+.+--|.++.+.+.++..+..+++.+|.+ ||.+.+-+...= ....||||+|-...
T Consensus 46 V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~-------~t~~PVIgVPv~~~ 101 (173)
T 4grd_A 46 VVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA-------KTTVPVLGVPVASK 101 (173)
T ss_dssp ECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH-------HCCSCEEEEEECCT
T ss_pred EEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee-------cCCCCEEEEEcCCC
Confidence 34555777788888899999999988766 666666654431 13678999997644
No 106
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=36.94 E-value=86 Score=28.59 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=22.6
Q ss_pred CceEEEEEcc-CCCCcchhHHHHHHHHHHHH
Q 012698 90 DEVHACIVTC-GGLCPGLNTVIREIVCGLYH 119 (458)
Q Consensus 90 ~~~~iaIlts-GG~apGmNavIr~~v~~~~~ 119 (458)
+..+|||+.. .-.-|-...++.++-+.+.+
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~ 40 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAK 40 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHH
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 3468999986 55677888899998887754
No 107
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=36.87 E-value=36 Score=31.69 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=51.1
Q ss_pred cEEEEEccccccccc---------CCcccCChhHHhchhhcCccccccCCC--cchHHHHHHHHHHcCCcEEEEEcCCCc
Q 012698 124 SKILGIDGGYRGFYS---------KNTINLTPKVVNDIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT 192 (458)
Q Consensus 124 ~~v~Gi~~G~~GL~~---------~~~~~L~~~~v~~~~~~GGs~LGtsR~--~~~~~~i~~~l~~~~I~~LvvIGGdgs 192 (458)
.-++|+-.|..=|++ |++-.++.+..+.+...|-.++-.... .-|.+++++.+.+++.+-++++|+.|.
T Consensus 26 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 105 (222)
T 3lm8_A 26 TLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGG 105 (222)
T ss_dssp EEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHHHCCSEEEEESCCCS
T ss_pred CEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 467778887776653 566667777777776665455544433 247999999999999999999999997
No 108
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=36.30 E-value=38 Score=34.37 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
...+++++.++++++ |.++.+||--.++.|..++-. +...+|+|.||-|.
T Consensus 107 ~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~---~~rgip~I~IPTTl 159 (390)
T 3okf_A 107 ETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAAC---YQRGVDFIQIPTTL 159 (390)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHH---hcCCCCEEEeCCCC
Confidence 457899999999999 699999998888877766532 23357899999994
No 109
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=36.12 E-value=37 Score=33.60 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
+..+++++.++++++ |.++-+||--.++.|..++-. +.-.+|+|.||-|
T Consensus 68 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~---~~rgip~i~IPTT 119 (348)
T 1ujn_A 68 EVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAAT---YLRGVAYLAFPTT 119 (348)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHH---hccCCCEEEecCc
Confidence 457889999999998 899999998888877766532 2235789999998
No 110
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=35.81 E-value=21 Score=31.93 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=18.6
Q ss_pred cchHHHHHHHHHHc----CCcEEEEEcCCCc
Q 012698 166 GHDTSKIVDSIQDR----GINQVYIIGGDGT 192 (458)
Q Consensus 166 ~~~~~~i~~~l~~~----~I~~LvvIGGdgs 192 (458)
+.+.+.+.+.|++. +.|.+|+.||-|.
T Consensus 50 ~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 50 PDERDLIEKTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp CSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 44555555555543 7999999999764
No 111
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=35.57 E-value=42 Score=30.07 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=43.3
Q ss_pred CCcchHHHHHHHHHHcCCcEEEEEcCC-CchHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcCCc
Q 012698 164 RGGHDTSKIVDSIQDRGINQVYIIGGD-GTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENG 242 (458)
Q Consensus 164 R~~~~~~~i~~~l~~~~I~~LvvIGGd-gs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~r 242 (458)
|.++.+.+++++.++.+++.+|.+-|- +.+-+.. +- ....||||+|-... ++.- +|++..... ++.+
T Consensus 42 R~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~-~l~G---~dsLlS~vq-mp~G 109 (163)
T 3ors_A 42 RTPKMMVQFASEARERGINIIIAGAGGAAHLPGMV--AS-----LTTLPVIGVPIETK-SLKG---IDSLLSIVQ-MPGG 109 (163)
T ss_dssp TSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCT-TTTT---HHHHHHHHT-CCTT
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH--Hh-----ccCCCEEEeeCCCC-CCCC---HHHHHHHhh-CCCC
Confidence 444455555555555556655544332 2232221 11 13578999996543 3332 333333333 4554
Q ss_pred E--EEEEec---CCcchhHHHHh
Q 012698 243 I--GVVKLM---GRYCGFIAMYA 260 (458)
Q Consensus 243 v--~iVEvM---GR~~G~lA~~a 260 (458)
| ..|=.- |.++|++|...
T Consensus 110 vPVatV~I~~a~~~nAa~lAa~I 132 (163)
T 3ors_A 110 IPVATTAIGAAGAKNAGILAARM 132 (163)
T ss_dssp SCCEECCSTHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCcccHHHHHHHHHH
Confidence 4 666553 67788887654
No 112
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=35.32 E-value=37 Score=30.74 Aligned_cols=89 Identities=13% Similarity=0.254 Sum_probs=51.6
Q ss_pred cccCCCcchHHHHHHHHHHcCCcEEEEEcCCC-chHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhh
Q 012698 160 LGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG-TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAES 238 (458)
Q Consensus 160 LGtsR~~~~~~~i~~~l~~~~I~~LvvIGGdg-s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s 238 (458)
.+--|.++.+.+++++.++.+++.+|.+-|-. .+-+.. +- ....||||+|-...+ +. -++++.....+
T Consensus 42 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~~-l~---G~daLlS~vqm 110 (174)
T 3lp6_A 42 VSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMV--AA-----ATPLPVIGVPVPLGR-LD---GLDSLLSIVQM 110 (174)
T ss_dssp CCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCSS-GG---GHHHHHHHHCC
T ss_pred ECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHH--Hh-----ccCCCEEEeeCCCCC-CC---CHHHHHHHhhC
Confidence 44457778888999999999999887775544 444432 21 136789999965443 33 23333333333
Q ss_pred cCCcE--EEEEe-cCCcchhHHHHh
Q 012698 239 IENGI--GVVKL-MGRYCGFIAMYA 260 (458)
Q Consensus 239 ~~~rv--~iVEv-MGR~~G~lA~~a 260 (458)
+.++ ..|=+ =|.++|++|...
T Consensus 111 -p~GvpVatV~I~~~~nAa~lAa~I 134 (174)
T 3lp6_A 111 -PAGVPVATVSIGGAGNAGLLAVRM 134 (174)
T ss_dssp -CTTCCCEECCTTCHHHHHHHHHHH
T ss_pred -CCCCeeEEEEcCcchHHHHHHHHH
Confidence 4443 33322 235666666443
No 113
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=34.94 E-value=85 Score=29.38 Aligned_cols=68 Identities=25% Similarity=0.364 Sum_probs=47.9
Q ss_pred cchHHHHHHHHHHc-C----CcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc------------ccCchhHHHH
Q 012698 166 GHDTSKIVDSIQDR-G----INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT------------IDNDIPAQRA 228 (458)
Q Consensus 166 ~~~~~~i~~~l~~~-~----I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT------------IDNDi~a~~a 228 (458)
+.|+..+.+.|.+. . =|-+++=||-|=+..|....++ .|++++|+|+-|- ++.|-++-..
T Consensus 65 ~DDya~m~Evl~RR~~r~~~PDLiliDGGkgQl~~a~~vl~~---lg~~i~v~glaK~~e~l~~~~~~~~l~~~s~~l~l 141 (220)
T 2nrt_A 65 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKKEETVVFENREIHLPHDHPVLRL 141 (220)
T ss_dssp CCHHHHHHHHHHHHHTTSCCCSEEEESSSHHHHHHHHHHHHH---TTCCCCEEEECTTTCCEEETTEEECCCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCCeEEEEECCCcEEEeCCCeeecCCCCHHHHh
Confidence 46888888877765 2 4777777999999888877654 5889999999992 1112125566
Q ss_pred HHHHHHHh
Q 012698 229 INAAHVEA 236 (458)
Q Consensus 229 i~~i~~~A 236 (458)
+..++++|
T Consensus 142 lq~iRDEa 149 (220)
T 2nrt_A 142 LVQIRDET 149 (220)
T ss_dssp HHHHHHHH
T ss_pred hhhhcchh
Confidence 77777665
No 114
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=34.65 E-value=40 Score=30.41 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=9.4
Q ss_pred CCeeEeeeccccc
Q 012698 208 LKVAVAGIPKTID 220 (458)
Q Consensus 208 ~~i~vvgIPkTID 220 (458)
...||||+|-.-.
T Consensus 88 t~~PVIgVP~~~~ 100 (170)
T 1xmp_A 88 TNLPVIGVPVQSK 100 (170)
T ss_dssp CCSCEEEEEECCT
T ss_pred cCCCEEEeeCCCC
Confidence 3678999997543
No 115
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=34.50 E-value=49 Score=32.33 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHHcCCcEEEEEcCCCc------------hHHHHHHHHHHHHc-C--CCeeEeeec
Q 012698 165 GGHDTSKIVDSIQDRGINQVYIIGGDGT------------QKGAAVIYEEIRQR-G--LKVAVAGIP 216 (458)
Q Consensus 165 ~~~~~~~i~~~l~~~~I~~LvvIGGdgs------------~~~a~~L~~~~~~~-~--~~i~vvgIP 216 (458)
+...++..+..++..||+.++++.||-. +..|..|.+.+++. | +.|-+.+-|
T Consensus 84 ~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 84 SRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 3457888899999999999999999932 55577777776665 4 667777766
No 116
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=34.37 E-value=1.3e+02 Score=27.17 Aligned_cols=95 Identities=7% Similarity=0.036 Sum_probs=54.4
Q ss_pred CceEEEEEccCCC--CcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccC-CC-
Q 012698 90 DEVHACIVTCGGL--CPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS-RG- 165 (458)
Q Consensus 90 ~~~~iaIltsGG~--apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGts-R~- 165 (458)
+..+||++...-. .|-...+++++.+.+.+ ++ .++. +..+. ..
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------------------------~~~~~~~~~ 50 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKE-YE-IKLE-------------------------------FMAPEKEED 50 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHH-HT-CEEE-------------------------------ECCCSSTTC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EecCCCCCC
Confidence 3458999987655 67777888888777754 33 2222 00010 11
Q ss_pred cchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccC
Q 012698 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (458)
Q Consensus 166 ~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (458)
.....+.++.|...++|++++.+.+.... ....+.+.+. .+|+|.+-...++
T Consensus 51 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~--~~~~~~~~~~--~iPvV~~~~~~~~ 102 (289)
T 3brs_A 51 YLVQNELIEEAIKRKPDVILLAAADYEKT--YDAAKEIKDA--GIKLIVIDSGMKQ 102 (289)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCSCTTTT--HHHHTTTGGG--TCEEEEESSCCSS
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCChHHh--HHHHHHHHHC--CCcEEEECCCCCC
Confidence 12334667888889999999998765431 1112223233 4667766544443
No 117
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=33.92 E-value=84 Score=29.64 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=59.5
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCc-ccCChhHHhchhhcCccccccCC---CcchHHHHHHHHHHc
Q 012698 104 PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSR---GGHDTSKIVDSIQDR 179 (458)
Q Consensus 104 pGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGtsR---~~~~~~~i~~~l~~~ 179 (458)
|.-+...+.+++.+.+.++..+|.-+. + +..+ ..+...-.+.+...|+++..... ...++...++.+++.
T Consensus 119 ~~~~~~~~~~~~~l~~~~g~~~iaii~-~-----~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~ 192 (356)
T 3ipc_A 119 GRDDQQGGIAGKYLADHFKDAKVAIIH-D-----KTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEA 192 (356)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEE-C-----SSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEEe-C-----CChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc
Confidence 333445566676665444544444332 2 1111 11111122234456666544332 234677888889999
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 180 ~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
+.|++|+.+-+.. +..+.+.+++.|+++++++....-
T Consensus 193 ~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~~~~ 229 (356)
T 3ipc_A 193 GVSIIYWGGLHTE---AGLIIRQAADQGLKAKLVSGDGIV 229 (356)
T ss_dssp TCCEEEEESCHHH---HHHHHHHHHHHTCCCEEEECGGGC
T ss_pred CCCEEEEccCchH---HHHHHHHHHHCCCCCcEEEecccc
Confidence 9999887664432 334556677789999888765443
No 118
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=32.68 E-value=35 Score=34.28 Aligned_cols=50 Identities=22% Similarity=0.342 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
...+++++.++++++ |.++.+||--.+..|..++... .+| +++|.||-|.
T Consensus 87 ~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 139 (368)
T 3qbe_A 87 PVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW-LRG--VSIVHLPTTL 139 (368)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh-ccC--CcEEEECCCC
Confidence 357888999998875 9999999988888777665422 234 6899999993
No 119
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=32.39 E-value=2.5e+02 Score=26.33 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=44.7
Q ss_pred chhhcCccccccC--CCcchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 151 DIHKRGGTILGTS--RGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 151 ~~~~~GGs~LGts--R~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
.+...|+++.... ....++...++.+++.+.|++|+.+-+ ..+..+.+.+++.|+++++++...+-+
T Consensus 173 ~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~~~~ 241 (366)
T 3td9_A 173 KFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYY---PEIALISRQARQLGFTGYILAGDGADA 241 (366)
T ss_dssp HHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCH---HHHHHHHHHHHHTTCCSEEEECGGGCS
T ss_pred HHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccch---hHHHHHHHHHHHcCCCceEEeeCCcCC
Confidence 3445666655443 223467778888999999999886543 234456677778899999887655433
No 120
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=32.28 E-value=1.3e+02 Score=27.47 Aligned_cols=87 Identities=7% Similarity=0.140 Sum_probs=52.1
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++... ..|-...++.++...+.+ ++ .++. +.++.. ....
T Consensus 8 ~~~Igvi~~~-~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~ 52 (288)
T 2qu7_A 8 SNIIAFIVPD-QNPFFTEVLTEISHECQK-HH-LHVA--------------------------------VASSEENEDKQ 52 (288)
T ss_dssp EEEEEEEESS-CCHHHHHHHHHHHHHHGG-GT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEECC-CCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCHHHH
Confidence 4589999987 777777888888777643 22 2222 111111 1223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
.+.++.|...++|++++.+.+.+-.....+ . .+|+|.+-...+
T Consensus 53 ~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l------~--~iPvV~~~~~~~ 95 (288)
T 2qu7_A 53 QDLIETFVSQNVSAIILVPVKSKFQMKREW------L--KIPIMTLDRELE 95 (288)
T ss_dssp HHHHHHHHHTTEEEEEECCSSSCCCCCGGG------G--GSCEEEESCCCS
T ss_pred HHHHHHHHHcCccEEEEecCCCChHHHHHh------c--CCCEEEEecccC
Confidence 456778888999999999877542111111 2 467777655443
No 121
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=31.84 E-value=59 Score=31.78 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=39.0
Q ss_pred CcchHHHHHHHHHHcCCcEEEEEcCCC------chHHHHHHHHHHHHc-CCCeeEeeec
Q 012698 165 GGHDTSKIVDSIQDRGINQVYIIGGDG------TQKGAAVIYEEIRQR-GLKVAVAGIP 216 (458)
Q Consensus 165 ~~~~~~~i~~~l~~~~I~~LvvIGGdg------s~~~a~~L~~~~~~~-~~~i~vvgIP 216 (458)
+...++..+..+...||+.++++.||- .+..|..|.+.+++. ++.|.+.+-|
T Consensus 95 ~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 95 TPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 346788889999999999999999984 355577777766553 5777777766
No 122
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=31.52 E-value=69 Score=25.91 Aligned_cols=18 Identities=17% Similarity=0.541 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHcCCcEE
Q 012698 167 HDTSKIVDSIQDRGINQV 184 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~L 184 (458)
.+++++.+.+++++++.|
T Consensus 38 ~~~~~l~~li~e~~v~~i 55 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKL 55 (98)
T ss_dssp HHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 345566666666666553
No 123
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.96 E-value=1e+02 Score=24.52 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=47.9
Q ss_pred chhhcCccccccCCCcchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCC
Q 012698 151 DIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (458)
Q Consensus 151 ~~~~~GGs~LGtsR~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (458)
.-++.+|..|.|.-+.+|+..|++.++.++---++.+-|- |....+.+..++++.|..
T Consensus 22 akhnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvs 79 (112)
T 2lnd_A 22 AKHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVS 79 (112)
T ss_dssp HHHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCE
T ss_pred hhcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcc
Confidence 3478888899898888999999999999998888888775 555678888888888864
No 124
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=29.88 E-value=3.5e+02 Score=25.72 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=62.2
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCc-ccCChhHHhchhhcCccccccCCC---cchHHHHHHH--HH
Q 012698 104 PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSRG---GHDTSKIVDS--IQ 177 (458)
Q Consensus 104 pGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGtsR~---~~~~~~i~~~--l~ 177 (458)
|--+...+.+++.+.+.++..+| ++..+- +..+ ..+...-.+.+...|+++..+... ..++...+.. ++
T Consensus 122 ~~~~~~~~~~~~~l~~~~g~~~i-aii~~~----~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~ 196 (391)
T 3eaf_A 122 PDYSTQACSGLAFLASEFGQGKL-ALAYDS----KVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREML 196 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEE-EEEECT----TCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEE-EEEEec----CChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHH
Confidence 33455566666666543354344 444321 1111 111112223344566666554332 3478888888 99
Q ss_pred HcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 178 DRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 178 ~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
+.+.|++|+.+- + ..+..+.+.+++.|+++++++...+.+.+
T Consensus 197 ~~~~dav~~~~~-~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 238 (391)
T 3eaf_A 197 AADPDYVWCGNT-I--SSCSLLGRAMAKVGLDAFLLTNVWGFDER 238 (391)
T ss_dssp TTCCSEEEECSC-H--HHHHHHHHHHHHHTCCCEEEECGGGCSTT
T ss_pred HcCCCEEEEecC-c--HHHHHHHHHHHHCCCCceEEEeccCCCHH
Confidence 999999987553 2 23445666777889999988765444433
No 125
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=29.65 E-value=1.4e+02 Score=27.56 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=56.1
Q ss_pred EEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---------CCcccCChhHHhchhhcCccccccCCC
Q 012698 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---------KNTINLTPKVVNDIHKRGGTILGTSRG 165 (458)
Q Consensus 95 aIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~---------~~~~~L~~~~v~~~~~~GGs~LGtsR~ 165 (458)
+++.+||+.|-.- . ...-++|+-.|..=|++ |++-.++.+..+.+...|=.++--...
T Consensus 4 ~~I~~gG~~~~~~-----------~--~~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~~~e 70 (218)
T 3ihk_A 4 VALFSGGDLTYFT-----------R--DFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPAE 70 (218)
T ss_dssp EEEECSSCCSCCC-----------C--CCSEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCSSEEECCSS
T ss_pred EEEEECCCCccCc-----------c--cCCEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCC
Confidence 5666788876321 0 12468888888877764 345556666666665554334432222
Q ss_pred --cchHHHHHHHHHHc-CCcEEEEEcCCCc
Q 012698 166 --GHDTSKIVDSIQDR-GINQVYIIGGDGT 192 (458)
Q Consensus 166 --~~~~~~i~~~l~~~-~I~~LvvIGGdgs 192 (458)
.-|.+++++.+.++ +.+-++++|+.|.
T Consensus 71 KD~TD~e~Al~~a~~~~~~~~I~i~Ga~GG 100 (218)
T 3ihk_A 71 KNDTDTELALKTIFDCFGRVEIIVFGAFGG 100 (218)
T ss_dssp CSSCHHHHHHHHHHHHTSSCEEEEESCSSS
T ss_pred CCCCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 24799999888876 8999999999998
No 126
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=28.84 E-value=57 Score=29.02 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc---------------------CCCeeEeeecc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR---------------------GLKVAVAGIPK 217 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~---------------------~~~i~vvgIPk 217 (458)
+-.+++.+.|++++|.+=+-+ -+.+++-.++.++.+++ ....||||+|-
T Consensus 13 ~v~~~a~~~l~~~gi~~dv~V--~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 13 KIAEKAVNILKEFGVEFEVRV--ASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE--CCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEE--EcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHHHHhccCCCEEEecC
Confidence 345666666666666643333 23555555555554422 23678999997
No 127
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=28.04 E-value=2.1e+02 Score=28.60 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhh--cCCcEEEE
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAES--IENGIGVV 246 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s--~~~rv~iV 246 (458)
++++-+.++++ +-+++|-+.+......++.+.+.+.|+.+.++.+|..-.|- ..+.++.+...+.. ..+.=+||
T Consensus 33 l~~l~~~l~~~--~rvlIVtd~~v~~~~~~v~~~L~~~g~~~~~~~~~~gE~~k--t~~~v~~~~~~l~~~~~~r~d~II 108 (368)
T 3qbe_A 33 LDELEDLLADR--HKVAVVHQPGLAETAEEIRKRLAGKGVDAHRIEIPDAEAGK--DLPVVGFIWEVLGRIGIGRKDALV 108 (368)
T ss_dssp HHHHHHHHTTC--SEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEECCSGGGGG--BHHHHHHHHHHHHHHTCCTTCEEE
T ss_pred HHHHHHHHHcC--CEEEEEECccHHHHHHHHHHHHHhcCCcceEEEeCCCCCCC--CHHHHHHHHHHHHHcCCCCCcEEE
Confidence 45666666654 77777777777776777778887778776666666554331 12223333332222 12345789
Q ss_pred EecCCcchhHHHHhh--cccCCCceEecCCC
Q 012698 247 KLMGRYCGFIAMYAT--LGSRDVDCCLIPES 275 (458)
Q Consensus 247 EvMGR~~G~lA~~aa--LA~~~ad~ilIPE~ 275 (458)
=+=|+..+.+|-.+| ... +..++.||-.
T Consensus 109 avGGGsv~D~ak~~Aa~~~r-gip~i~IPTT 138 (368)
T 3qbe_A 109 SLGGGAATDVAGFAAATWLR-GVSIVHLPTT 138 (368)
T ss_dssp EEESHHHHHHHHHHHHHGGG-CCEEEEEECS
T ss_pred EECChHHHHHHHHHHHHhcc-CCcEEEECCC
Confidence 999999888886665 334 7888888875
No 128
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=27.99 E-value=21 Score=35.57 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
+.++++++.+++ +.|.+|-|||--.+..|..++-. + .+|+|.||-|-..|
T Consensus 82 ~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~---~--~~p~i~IPTTa~tg 131 (376)
T 1kq3_A 82 EEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK---L--KKPVVIVPTIASTD 131 (376)
T ss_dssp HHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH---T--TCCEEEEESSCCCS
T ss_pred HHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh---c--CCCEEEecCccccC
Confidence 457778888888 99999999998888888877732 2 47899999994444
No 129
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=27.45 E-value=62 Score=32.18 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I---~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
+..+++++.+.++++ |.++-+||--.++.|..++-. +.-.+|+|.||-|
T Consensus 78 ~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~---~~rgip~i~IPTT 129 (368)
T 2gru_A 78 STVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGM---MFRGIALIHVPTT 129 (368)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHH---hcCCCCEEEECCc
Confidence 356788899999995 999999998777777665532 2224789999999
No 130
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=27.15 E-value=49 Score=30.17 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=23.9
Q ss_pred CCcchHHHHHHHHHHcCCcEEEEEcC-CCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 164 RGGHDTSKIVDSIQDRGINQVYIIGG-DGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 164 R~~~~~~~i~~~l~~~~I~~LvvIGG-dgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
|.++.+.+++++.++.+++.+|.+-| .+.+-+... - ....||||+|-...
T Consensus 60 R~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~~~ 110 (182)
T 1u11_A 60 RTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCA--A-----WTRLPVLGVPVESR 110 (182)
T ss_dssp TCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHH--H-----HCSSCEEEEEECCT
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHH--h-----ccCCCEEEeeCCCC
Confidence 44444445554444555554444432 222322211 1 12578999997543
No 131
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=27.14 E-value=2.9e+02 Score=26.22 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
..+.++.|...++|++|+.+-...-... +.+.+.++ |+|.+=.
T Consensus 117 ~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~i--PvV~i~~ 159 (366)
T 3h5t_A 117 HVSAQQLVNNAAVDGVVIYSVAKGDPHI----DAIRARGL--PAVIADQ 159 (366)
T ss_dssp HHHHHHHHHTCCCSCEEEESCCTTCHHH----HHHHHHTC--CEEEESS
T ss_pred HHHHHHHHHhCCCCEEEEecCCCChHHH----HHHHHCCC--CEEEECC
Confidence 5577888999999999999764443322 33334454 5665533
No 132
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=26.99 E-value=3.9e+02 Score=24.88 Aligned_cols=50 Identities=14% Similarity=0.291 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCc--EEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 169 TSKIVDSIQDRGIN--QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 169 ~~~i~~~l~~~~I~--~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
+++..+.|++.+=. .-|+.-|+-+......+++.+.+.|.++=-+|+|-+
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~s 55 (262)
T 2ekc_A 4 ISDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFS 55 (262)
T ss_dssp HHHHHHHHHHHTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHHHHhcCCceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 34555666554333 335569999999999999999999999889999984
No 133
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=26.58 E-value=41 Score=30.68 Aligned_cols=88 Identities=15% Similarity=0.276 Sum_probs=51.6
Q ss_pred cccCCCcchHHHHHHHHHHcCCcEEEEEcC-CCchHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhh
Q 012698 160 LGTSRGGHDTSKIVDSIQDRGINQVYIIGG-DGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAES 238 (458)
Q Consensus 160 LGtsR~~~~~~~i~~~l~~~~I~~LvvIGG-dgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s 238 (458)
.+--|.++.+.+++++.++.+++.+|.+-| .+.+-+... - ....||||+|-...+ +. -+|++.....+
T Consensus 48 ~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~~~~-l~---G~dsLlSivqm 116 (183)
T 1o4v_A 48 VSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVA--S-----ITHLPVIGVPVKTST-LN---GLDSLFSIVQM 116 (183)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHH--H-----HCSSCEEEEEECCTT-TT---THHHHHHHHTC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHH--h-----ccCCCEEEeeCCCCC-CC---cHHHHHHHhcC
Confidence 444577777888888888889997776644 444544332 1 136789999976642 22 22333333333
Q ss_pred cCCcEEEEEec----CCcchhHHHHh
Q 012698 239 IENGIGVVKLM----GRYCGFIAMYA 260 (458)
Q Consensus 239 ~~~rv~iVEvM----GR~~G~lA~~a 260 (458)
+.++- |=|+ |.++|++|...
T Consensus 117 -P~Gvp-VatV~Id~~~nAa~lAaqI 140 (183)
T 1o4v_A 117 -PGGVP-VATVAINNAKNAGILAASI 140 (183)
T ss_dssp -CTTCC-CEECCTTCHHHHHHHHHHH
T ss_pred -CCCCe-eEEEecCCchHHHHHHHHH
Confidence 44443 4455 44666666444
No 134
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=26.40 E-value=2.6e+02 Score=25.88 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=39.9
Q ss_pred hhcCccccccC---CCcchHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccc
Q 012698 153 HKRGGTILGTS---RGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (458)
Q Consensus 153 ~~~GGs~LGts---R~~~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (458)
...|+++.... ....++...++.+++.+.|++|+.+.+. .+..+.+.+++.|+++++++....
T Consensus 163 ~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~~ 228 (346)
T 1usg_A 163 KAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYP---EMGQMLRQARSVGLKTQFMGPEGV 228 (346)
T ss_dssp HHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHH---HHHHHHHHHHHTTCCCEEEECGGG
T ss_pred HHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcch---HHHHHHHHHHHcCCCCeEEecCCC
Confidence 34555554322 1224556777888888999999876322 234455667778999888875544
No 135
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=26.36 E-value=4.1e+02 Score=24.94 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCC
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGD 190 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGd 190 (458)
.+.++.++.|.+.++|++|++|..
T Consensus 49 ~~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 49 AEYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp GGHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHHHHHHHHHcCCCEEEECChh
Confidence 345577888889999999999743
No 136
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=26.28 E-value=3.9e+02 Score=24.71 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=50.9
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||+++.. .-|=...++.++.+.+.+ +.+.++. +-.+.. ....
T Consensus 6 ~~~Igvi~~~-~~~~~~~~~~gi~~~a~~-~~g~~l~--------------------------------i~~~~~~~~~~ 51 (325)
T 2x7x_A 6 HFRIGVAQCS-DDSWRHKMNDEILREAMF-YNGVSVE--------------------------------IRSAGDDNSKQ 51 (325)
T ss_dssp CCEEEEEESC-CSHHHHHHHHHHHHHHTT-SSSCEEE--------------------------------EEECTTCHHHH
T ss_pred CeEEEEEecC-CCHHHHHHHHHHHHHHHH-cCCcEEE--------------------------------EeCCCCCHHHH
Confidence 4589999876 555556677777666632 2122222 111111 1223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
...++.|...++|++++.+.+... .....+.+.+.+ +|||.+-..++
T Consensus 52 ~~~i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~~~~ 98 (325)
T 2x7x_A 52 AEDVHYFMDEGVDLLIISANEAAP--MTPIVEEAYQKG--IPVILVDRKIL 98 (325)
T ss_dssp HHHHHHHHHTTCSEEEECCSSHHH--HHHHHHHHHHTT--CCEEEESSCCS
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEeCCCCC
Confidence 456777888999999998765432 112234444445 56776654443
No 137
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=26.10 E-value=4e+02 Score=24.68 Aligned_cols=91 Identities=9% Similarity=0.014 Sum_probs=52.5
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-chHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-~~~~ 170 (458)
.+||++...-.-|=...++.++.+.+.+ .+ .++. +...+... ....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~-~g-~~~~-------------------------------~~~~~~~d~~~q~ 50 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKA-LG-IDVT-------------------------------YDGPTEPSVSGQV 50 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHH-HT-CEEE-------------------------------ECCCSSCCHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHH-hC-CEEE-------------------------------EECCCCCCHHHHH
Confidence 4799998665567777777887776653 23 1222 01111111 2334
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
..++.|...++|+|++.+-+.+... . ..+.+.+.+ ||||.+-..+
T Consensus 51 ~~i~~li~~~vdgiii~~~~~~~~~-~-~~~~a~~~g--ipvV~~d~~~ 95 (316)
T 1tjy_A 51 QLVNNFVNQGYDAIIVSAVSPDGLC-P-ALKRAMQRG--VKILTWDSDT 95 (316)
T ss_dssp HHHHHHHHTTCSEEEECCSSSSTTH-H-HHHHHHHTT--CEEEEESSCC
T ss_pred HHHHHHHHcCCCEEEEeCCCHHHHH-H-HHHHHHHCc--CEEEEecCCC
Confidence 6678888899999999887654211 1 223333444 6777764433
No 138
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=25.76 E-value=1.6e+02 Score=28.76 Aligned_cols=101 Identities=19% Similarity=0.182 Sum_probs=59.9
Q ss_pred eEEEEEc-cCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCccc--CChhHHhchhhcCccccccCCC-cc
Q 012698 92 VHACIVT-CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTIN--LTPKVVNDIHKRGGTILGTSRG-GH 167 (458)
Q Consensus 92 ~~iaIlt-sGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~--L~~~~v~~~~~~GGs~LGtsR~-~~ 167 (458)
++|+|+| |..+-| .... +.++. .++-+.-=+.|=.-.+-++ ++.+++-.+... |....||.- ..
T Consensus 35 M~i~IvtDSt~dL~------~e~~----~~~~I-~vvPL~v~~~~~~Y~D~vd~~i~~~efy~~m~~-~~~p~TSqPs~~ 102 (320)
T 3pl5_A 35 MTFKILTDSTADLP------ESWT----QENDV-QVLGLTVQLDGITYETVGPDRLTSRVLLEKIAA-GSKPTTSQVNVG 102 (320)
T ss_dssp -CCEEEEEGGGCCC------HHHH----HHHTE-EEECCEEEETTEEEESSSTTCCCHHHHHHHHHT-TCCCEEECCCHH
T ss_pred ccEEEEEECCCCCC------HHHH----HhCCe-EEEeEEEEECCEEEEcCCCCCcCHHHHHHHHhc-CCCCccCCCCHH
Confidence 6799999 666666 2222 22342 3432222122211112233 899888887766 455677764 35
Q ss_pred hHHHHHHHHHHcCCcEEEEEc----CCCchHHHHHHHHHHHH
Q 012698 168 DTSKIVDSIQDRGINQVYIIG----GDGTQKGAAVIYEEIRQ 205 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIG----Gdgs~~~a~~L~~~~~~ 205 (458)
++.++.+.+.+.+ +.+++|. =.||+.+|...++.+.+
T Consensus 103 ~~~~~f~~l~~~g-~~Ii~I~iSS~LSGTy~sA~~Aa~~~~e 143 (320)
T 3pl5_A 103 QFESYFRQSAENG-QEVLYIAFSSVLSGTYQSAVMARDIVLE 143 (320)
T ss_dssp HHHHHHHHHHHTT-CCEEEEECCTTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CeEEEEecCchHhHHHHHHHHHHHHHHh
Confidence 7888888887777 6666663 57888888877776544
No 139
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=24.94 E-value=1.6e+02 Score=27.10 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=57.9
Q ss_pred EEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---------CCcccCChhHHhchhhcCccccccCCC
Q 012698 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---------KNTINLTPKVVNDIHKRGGTILGTSRG 165 (458)
Q Consensus 95 aIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~---------~~~~~L~~~~v~~~~~~GGs~LGtsR~ 165 (458)
+++.+||+.|-... ...+ ...-++|+-.|..=|++ |++-.++.+..+.+...|=.++--...
T Consensus 4 ~~I~~gG~~~~~~~-------~~~~--~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~~~~~~~e 74 (222)
T 3mel_A 4 VLLVAGGNPSDWPT-------IEPA--TYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTETLIQAPAE 74 (222)
T ss_dssp EEEECSSCGGGCCC-------CCGG--GCSCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCSSEEECCSS
T ss_pred EEEEECCCCccchh-------HHhh--cCCEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCCcEEECCcc
Confidence 56667888773221 0111 12368899999887765 345556666666666655333321222
Q ss_pred --cchHHHHHHHHHHcCCc-EEEEEcCCCc
Q 012698 166 --GHDTSKIVDSIQDRGIN-QVYIIGGDGT 192 (458)
Q Consensus 166 --~~~~~~i~~~l~~~~I~-~LvvIGGdgs 192 (458)
.-|.+++++.+.+++-+ -++++|+.|.
T Consensus 75 KD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg 104 (222)
T 3mel_A 75 KDDTDTQLALQEALQRFPQAEMTIIGATGG 104 (222)
T ss_dssp CSSCHHHHHHHHHHHHCTTSEEEEECCCSS
T ss_pred CCCCHHHHHHHHHHHhCCCceEEEEccCCC
Confidence 24789999999999887 9999999997
No 140
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=24.63 E-value=81 Score=28.08 Aligned_cols=88 Identities=9% Similarity=0.094 Sum_probs=48.2
Q ss_pred cccCCCcchHHHHHHHHHHc-CCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhh
Q 012698 160 LGTSRGGHDTSKIVDSIQDR-GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAES 238 (458)
Q Consensus 160 LGtsR~~~~~~~i~~~l~~~-~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s 238 (458)
.+--|.++.+.+++++.++. +++.+|.+-|-...-..- ++- ....||||+|-. ..++. -+| +.....
T Consensus 37 ~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv-vA~-----~t~~PVIgVP~~-~~~l~---G~d-LlS~vq- 104 (159)
T 3rg8_A 37 GSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF-VDG-----FVKGATIACPPP-SDSFA---GAD-IYSSLR- 104 (159)
T ss_dssp CCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH-HHH-----HSSSCEEECCCC-CCGGG---GTH-HHHHHC-
T ss_pred EcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH-HHh-----ccCCCEEEeeCC-CCCCC---Ccc-HHHHHh-
Confidence 44456777788888888875 689888886655433222 221 136789999943 22333 233 322222
Q ss_pred cCCcEEEEEe-cCCcchhHHHH
Q 012698 239 IENGIGVVKL-MGRYCGFIAMY 259 (458)
Q Consensus 239 ~~~rv~iVEv-MGR~~G~lA~~ 259 (458)
++.++-++=+ =|.++|++|+.
T Consensus 105 mp~GvpVatv~~~~nAa~lA~~ 126 (159)
T 3rg8_A 105 MPSGISPALVLEPKNAALLAAR 126 (159)
T ss_dssp CCTTCCCEECCSHHHHHHHHHH
T ss_pred CCCCCceEEecCchHHHHHHHH
Confidence 4555544433 23344555543
No 141
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=24.38 E-value=1.3e+02 Score=28.65 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCchhHHHHHHHHHHHhhhcCCcEEEEEe
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVVKL 248 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~a~~ai~~i~~~A~s~~~rv~iVEv 248 (458)
.++.++.+++-|+|++++ -|-.+..+..+.+.++++|++.-.+.-|.| ..+.+..-+.....-++.|-+
T Consensus 112 ~e~f~~~~~~aGvdgvii--~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t---------~~eri~~i~~~~~gfvY~vS~ 180 (267)
T 3vnd_A 112 IDEFYTKAQAAGVDSVLI--ADVPVEESAPFSKAAKAHGIAPIFIAPPNA---------DADTLKMVSEQGEGYTYLLSR 180 (267)
T ss_dssp HHHHHHHHHHHTCCEEEE--TTSCGGGCHHHHHHHHHTTCEEECEECTTC---------CHHHHHHHHHHCCSCEEESCC
T ss_pred HHHHHHHHHHcCCCEEEe--CCCCHhhHHHHHHHHHHcCCeEEEEECCCC---------CHHHHHHHHHhCCCcEEEEec
Q ss_pred cC
Q 012698 249 MG 250 (458)
Q Consensus 249 MG 250 (458)
+|
T Consensus 181 ~G 182 (267)
T 3vnd_A 181 AG 182 (267)
T ss_dssp CC
T ss_pred CC
No 142
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=24.04 E-value=2.4e+02 Score=27.18 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=59.4
Q ss_pred eEEEEEc-cCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCcchHH
Q 012698 92 VHACIVT-CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (458)
Q Consensus 92 ~~iaIlt-sGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~~~~~ 170 (458)
++|+|+| |..+-| ... + +.++. .++-++-=+.|=.-.+-++++.+++-.....++.+..||.-. .+
T Consensus 20 Mki~IvtDSt~dL~------~e~---~-~~~~I-~vvPL~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSqps--~~ 86 (298)
T 3jr7_A 20 MSYKVIVDSCGEFT------PEM---K-ADGGF-EHVALGIQIEDTQWTDDDSLKQEELLLKIAESTSCAKTSCPS--PE 86 (298)
T ss_dssp CCEEEEEETTSCCC------HHH---H-HHSSE-EEECCEEEETTEEEECSTTSCHHHHHHHHHHCSSCCEEECCC--HH
T ss_pred CCEEEEEECCCCCC------HHH---H-HhCCe-EEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCCCC--HH
Confidence 5799999 666766 122 2 23443 443322222222111226799998888887777777777643 34
Q ss_pred HHHHHHHHcCCcEEEEEc----CCCchHHHHHHHHHHHH
Q 012698 171 KIVDSIQDRGINQVYIIG----GDGTQKGAAVIYEEIRQ 205 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIG----Gdgs~~~a~~L~~~~~~ 205 (458)
...+.+++ +-+.+++|. =.||+.+|...++.+.+
T Consensus 87 ~~~~~f~~-~~~~Ii~i~iSs~LSGTy~sA~~Aa~~~~e 124 (298)
T 3jr7_A 87 RYMESYHC-DAERIYVVTLSAELSGSYNSAVLGKNLYEE 124 (298)
T ss_dssp HHHHHHCS-SCSEEEEEESCTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcchhHHHHHHHHHHHHHHh
Confidence 44455554 567777773 57888888877766543
No 143
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=23.90 E-value=28 Score=35.86 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCc
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (458)
+.++++++.+++ +.|.+|-|||--.++.|..++-. + .+|+|.||-|-..|
T Consensus 133 ~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~---~--giP~I~IPTTAgtg 182 (450)
T 1ta9_A 133 VELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS---M--NLPSIICPTTASSD 182 (450)
T ss_dssp HHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH---T--TCCEEEEESSCSCS
T ss_pred HHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh---c--CCCEEEEeCCCccC
Confidence 456777777788 99999999998889988887732 2 47899999995444
No 144
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=23.50 E-value=4.3e+02 Score=24.18 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 012698 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (458)
....++.|...++|++++.+.+.... ....+.+.+.+ ||||.+=...+
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~~ 93 (313)
T 2h3h_A 46 QLQMLESFIAEGVNGIAIAPSDPTAV--IPTIKKALEMG--IPVVTLDTDSP 93 (313)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEESSCCT
T ss_pred HHHHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CeEEEeCCCCC
Confidence 34567777888999999988765421 11223333444 56776644443
No 145
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=22.48 E-value=31 Score=30.09 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccccCch
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (458)
+.+++++.|++.+.+-++||||-.-++.+..+.+ .+-+--+|..++.|.
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~ 129 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDT 129 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSE
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCE
Confidence 6788888999888889999999877776665433 355666788887664
No 146
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=22.30 E-value=1.6e+02 Score=29.15 Aligned_cols=40 Identities=13% Similarity=0.330 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCC
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (458)
+++..++.|.+. .|.++||||--|-.+ .+|.+.+++.+.+
T Consensus 214 ~RQ~av~~lA~~-vD~miVVGg~nSSNT-~rL~eia~~~g~~ 253 (328)
T 3szu_A 214 NRQEAVRALAEQ-AEVVLVVGSKNSSNS-NRLAELAQRMGKR 253 (328)
T ss_dssp HHHHHHHHHHHH-CSEEEEECCTTCHHH-HHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHh-CCEEEEeCCCCCchH-HHHHHHHHHhCCC
Confidence 567777777774 999999999988775 6788888877643
No 147
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=22.20 E-value=5.1e+02 Score=24.55 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCcEE--EEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 169 TSKIVDSIQDRGINQV--YIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 169 ~~~i~~~l~~~~I~~L--vvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+++..+.|++.+=.+| |+.-||-++.....+.+.+.+.|.++-=+|+|-
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPf 57 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPF 57 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4566777777665555 778999999999999999988899988899997
No 148
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=21.95 E-value=1.6e+02 Score=28.85 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCC
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (458)
+++..++.|-+ ..|.++||||--|-.+ .+|.+.+++.+.+
T Consensus 198 ~RQ~av~~la~-~~D~miVVGg~nSSNT-~rL~eia~~~~~~ 237 (297)
T 3dnf_A 198 LRQESVKKLAP-EVDVMIIIGGKNSGNT-RRLYYISKELNPN 237 (297)
T ss_dssp HHHHHHHHHGG-GSSEEEEESCTTCHHH-HHHHHHHHHHCSS
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCchh-HHHHHHHHhcCCC
Confidence 46777777776 4999999999888765 6788888777654
No 149
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=21.78 E-value=3.2e+02 Score=27.41 Aligned_cols=94 Identities=15% Similarity=0.275 Sum_probs=49.3
Q ss_pred CCCceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC-cccCChhHHhchhhcCccccccCCCc
Q 012698 88 VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN-TINLTPKVVNDIHKRGGTILGTSRGG 166 (458)
Q Consensus 88 ~~~~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~-~~~L~~~~v~~~~~~GGs~LGtsR~~ 166 (458)
.|..+||.|+-+|| -.++..+. +.+..+..++|.. .|-.|..... .+.+ ..
T Consensus 18 ~p~~m~ilvlG~gg---re~ala~~----l~~s~~v~~v~~~-pgn~g~~~~~~~~~i--------------------~~ 69 (442)
T 3lp8_A 18 GPGSMNVLVIGSGG---REHSMLHH----IRKSTLLNKLFIA-PGREGMSGLADIIDI--------------------DI 69 (442)
T ss_dssp --CCEEEEEEECSH---HHHHHHHH----HTTCTTEEEEEEE-ECCGGGTTTSEECCC--------------------CT
T ss_pred CCCCCEEEEECCCh---HHHHHHHH----HHhCCCCCEEEEE-CCChHHhhccceeec--------------------Cc
Confidence 46779999998873 23344443 4333333456654 4444443211 1111 23
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEee
Q 012698 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (458)
Q Consensus 167 ~~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (458)
.|.+.+++.++++++|.+++ |.+..+ +..+++.+++.|+ +++|
T Consensus 70 ~d~~~l~~~a~~~~id~vv~-g~E~~l--~~~~~~~l~~~Gi--~~~G 112 (442)
T 3lp8_A 70 NSTIEVIQVCKKEKIELVVI-GPETPL--MNGLSDALTEEGI--LVFG 112 (442)
T ss_dssp TCHHHHHHHHHHTTCCEEEE-CSHHHH--HTTHHHHHHHTTC--EEES
T ss_pred CCHHHHHHHHHHhCCCEEEE-CCcHHH--HHHHHHHHHhcCC--cEec
Confidence 46788888888889997775 433222 1234555555553 4543
No 150
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=21.68 E-value=1.2e+02 Score=25.95 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCeeEeeecccccCchh
Q 012698 199 IYEEIRQRGLKVAVAGIPKTIDNDIP 224 (458)
Q Consensus 199 L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (458)
|.+.+++++...-|||+|+++|+...
T Consensus 45 l~~li~e~~v~~iVvGlP~~mdGt~~ 70 (138)
T 1nu0_A 45 IERLLKEWQPDEIIVGLPLNMDGTEQ 70 (138)
T ss_dssp HHHHHHHHCCSEEEEEEEECTTSCBC
T ss_pred HHHHHHHcCCCEEEEecccCCCcCcC
Confidence 33333344445557777777777655
No 151
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=21.47 E-value=2e+02 Score=29.84 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=11.2
Q ss_pred cEEEE-EcCCCchHHHHHH
Q 012698 182 NQVYI-IGGDGTQKGAAVI 199 (458)
Q Consensus 182 ~~Lvv-IGGdgs~~~a~~L 199 (458)
|++|+ =||.||+.-...+
T Consensus 249 DAfIaLPGG~GTLEELfE~ 267 (462)
T 3gh1_A 249 HGIIIFPGGPGTAEELLYI 267 (462)
T ss_dssp SEEEECSCSHHHHHHHHHH
T ss_pred CEEEEcCCCcchHHHHHHH
Confidence 55555 4788887764443
No 152
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=21.31 E-value=4.3e+02 Score=23.41 Aligned_cols=87 Identities=7% Similarity=-0.129 Sum_probs=42.1
Q ss_pred EEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchHHH
Q 012698 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTSK 171 (458)
Q Consensus 93 ~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~~~ 171 (458)
+||++...-.-|-...++.++.+.+.+ ++ .++.- .++.. .....+
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~--------------------------------~~~~~~~~~~~~ 46 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLE-QR-YDLAL--------------------------------FPILSLARLKRY 46 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGG-GT-CEEEE--------------------------------CCCCSCCCCC--
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCchhhHHH
Confidence 378887665667777788888777753 33 23320 00000 111234
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 172 i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
.++.|...++|++++.+.+.+-. ..+.+.+ ..+|+|.+-...
T Consensus 47 ~~~~l~~~~vdgiI~~~~~~~~~----~~~~~~~--~~iPvV~~~~~~ 88 (276)
T 2h0a_A 47 LENTTLAYLTDGLILASYDLTER----FEEGRLP--TERPVVLVDAQN 88 (276)
T ss_dssp -------CCCSEEEEESCCCC----------CCS--CSSCEEEESSCC
T ss_pred HHHHHHhCCCCEEEEecCCCCHH----HHHHHhh--cCCCEEEEeccC
Confidence 56667788999999998776521 2223322 346677664443
No 153
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=21.22 E-value=4.5e+02 Score=23.60 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=49.4
Q ss_pred eEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCCc-chHH
Q 012698 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (458)
Q Consensus 92 ~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~~-~~~~ 170 (458)
.+||++...-.-|-...++.++.+.+.+ .+ .+++ +.++... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 47 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKE-LG-YKII--------------------------------VEDSQNDSSKEL 47 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHh-cC-cEEE--------------------------------EecCCCCHHHHH
Confidence 3788888766666677788887776653 23 2222 1111111 2234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecc
Q 012698 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (458)
Q Consensus 171 ~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (458)
+.++.|...++|++++.+.+.... ....+.+.+.+ +|||.+=.
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~ 90 (283)
T 2ioy_A 48 SNVEDLIQQKVDVLLINPVDSDAV--VTAIKEANSKN--IPVITIDR 90 (283)
T ss_dssp HHHHHHHHTTCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEESS
T ss_pred HHHHHHHHcCCCEEEEeCCchhhh--HHHHHHHHHCC--CeEEEecC
Confidence 567778889999999987553321 11223344445 45665533
No 154
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=20.68 E-value=81 Score=27.97 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=15.1
Q ss_pred HHHcCCcEEEEEcCCCchHH
Q 012698 176 IQDRGINQVYIIGGDGTQKG 195 (458)
Q Consensus 176 l~~~~I~~LvvIGGdgs~~~ 195 (458)
++..+.|+|++-||-++...
T Consensus 41 ~~~~~~dglil~gG~~~~~~ 60 (195)
T 1qdl_B 41 IERIDPDRLIISPGPGTPEK 60 (195)
T ss_dssp HHHHCCSEEEECCCSSCTTS
T ss_pred HhhCCCCEEEECCCCCChhh
Confidence 45557899999999887654
No 155
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=20.40 E-value=42 Score=29.24 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCchHHHHH--HHHHHHHcCCCeeEeeeccccc
Q 012698 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAV--IYEEIRQRGLKVAVAGIPKTID 220 (458)
Q Consensus 168 ~~~~i~~~l~~~~I~~LvvIGGdgs~~~a~~--L~~~~~~~~~~i~vvgIPkTID 220 (458)
+++++++.|++.+++-++|+||-.-+..+.. |.+ .+-+--+|+.+-
T Consensus 81 ~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvD-------el~l~~~p~~lG 128 (168)
T 1cz3_A 81 SPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVD-------ELFVTVEPYVFG 128 (168)
T ss_dssp CHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCS-------EEEEEECSEEES
T ss_pred CHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCC-------EEEEEEeceecC
Confidence 6788999999999999999999776665444 322 355666777764
No 156
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=20.04 E-value=4.8e+02 Score=23.48 Aligned_cols=90 Identities=7% Similarity=0.143 Sum_probs=53.1
Q ss_pred ceEEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCcccCChhHHhchhhcCccccccCCC-cchH
Q 012698 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (458)
Q Consensus 91 ~~~iaIltsGG~apGmNavIr~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGtsR~-~~~~ 169 (458)
..+||++...-.-|=...++.++-+.+.+ ++ .+++ +..+.. ....
T Consensus 20 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~ 65 (293)
T 2iks_A 20 TRSIGLVIPDLENTSYTRIANYLERQARQ-RG-YQLL--------------------------------IACSEDQPDNE 65 (293)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CcEEEEEeCCCcCcHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCCHHHH
Confidence 45899999766677777888888777753 33 2332 111111 1223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCCeeEeeecccc
Q 012698 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (458)
Q Consensus 170 ~~i~~~l~~~~I~~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (458)
...++.|...++|++++.+.+.+-. .+.+.+.+. .+|+|.+-...
T Consensus 66 ~~~~~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~--~iPvV~~~~~~ 110 (293)
T 2iks_A 66 MRCIEHLLQRQVDAIIVSTSLPPEH---PFYQRWAND--PFPIVALDRAL 110 (293)
T ss_dssp HHHHHHHHHTTCSEEEECCSSCTTC---HHHHTTTTS--SSCEEEEESCC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcH---HHHHHHHhC--CCCEEEECCcc
Confidence 4567788889999999998765432 122223233 45677654333
Done!