RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012698
(458 letters)
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 974 bits (2520), Expect = 0.0
Identities = 390/463 (84%), Positives = 420/463 (90%), Gaps = 14/463 (3%)
Query: 5 GNLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKI 64
G+ + K+V GDAGYVLEDVPHLTDY+PDLPTYPNPLQ N AYSVVKQYFVN DDTV+QKI
Sbjct: 1 GSSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKI 60
Query: 65 VVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVS 124
VVHKDSPRGTHFRRAGPRQKVYF SDEV ACIVTCGGLCPGLNTVIREIVCGL +MYGV+
Sbjct: 61 VVHKDSPRGTHFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVT 120
Query: 125 KILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 184
+ILGIDGGYRGFYS+NTI LTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV
Sbjct: 121 RILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 180
Query: 185 YIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAIN 230
YIIGGDGTQKGA+VIYEEIR+RGLKVAVAGIPKTIDNDIP AQRAIN
Sbjct: 181 YIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 240
Query: 231 AAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE 290
AAHVEAES+ENGIG+VKLMGRY GFIAMYATL SRDVDCCLIPESPFYLEG+GGL+EFIE
Sbjct: 241 AAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIE 300
Query: 291 KRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHK 350
KRLKENGHMVIV+AEGAGQDL+AES++S + QDASGNKLL DVGLW+S KIKDHF ++ K
Sbjct: 301 KRLKENGHMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKK 360
Query: 351 MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFN 410
M INLKYIDPTYMIRAIPSNASDNVYCTLLA SAVHGA+AGYTGFTVGPVNGRHAYIPF
Sbjct: 361 MPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGRHAYIPFY 420
Query: 411 RINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKPS 453
RI E+QN+VVITDRMWAR+LSSTNQPSFLS ++ + KRE
Sbjct: 421 RITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKREDEE 463
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 510 bits (1316), Expect = e-180
Identities = 211/437 (48%), Positives = 277/437 (63%), Gaps = 31/437 (7%)
Query: 30 IPDL--PTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPR---GTH---FRRAGP 81
I L P+PL ++ A + +FV+ D V + + GT F +AGP
Sbjct: 12 IETLGECKIPSPLIYSLA-AGDTTHFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGP 70
Query: 82 RQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGF---YS 138
R+K+YF +V A IVTCGGLCPGLN VIR IV L+H YGV +ILGI GY+G Y
Sbjct: 71 REKIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYG 130
Query: 139 KNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV 198
+ + LTP+VV DIH+ GGTILG+SRG D +IVD+++ IN +++IGGDGT +GA+
Sbjct: 131 HDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASA 190
Query: 199 IYEEIRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIG 244
I EEI +RGLK++V GIPKTIDNDI A AI AHVEA NGIG
Sbjct: 191 IAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIG 250
Query: 245 VVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIA 304
+VKLMGR+ GFIA YA L S+DV+ LIPE PF LEG GL +EKRL E GH VIV+A
Sbjct: 251 LVKLMGRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVA 310
Query: 305 EGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMI 364
EGAGQ+L ++ + DASGN L D+GL++ +IK++F + INLKYIDP+Y+I
Sbjct: 311 EGAGQELFDDT----GETDASGNPKLGDIGLFLKDRIKEYFKA-RGIPINLKYIDPSYII 365
Query: 365 RAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDR 424
R++P+NA+D+VYC L Q+AVH A+AG TG VG N R ++P + ++ +V
Sbjct: 366 RSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNRFVHLPIDLAVSKRKKVNPEGD 425
Query: 425 MWARVLSSTNQPSFLSA 441
+W VL ST QP +
Sbjct: 426 LWRSVLESTGQPRSMGN 442
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 479 bits (1236), Expect = e-168
Identities = 198/419 (47%), Positives = 268/419 (63%), Gaps = 24/419 (5%)
Query: 53 FVNVDDTVSQKIVVHKD--SPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVI 110
FV+ + + D + RAGPR+ +YF EV A IVTCGGLCPGLN VI
Sbjct: 47 FVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVI 106
Query: 111 REIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170
RE+V L + YGV I G GY+G Y ++ I L PK V IH+ GGTILG+SRGG D
Sbjct: 107 RELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPK 166
Query: 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP------ 224
+VD++ GIN ++ +GGDGT +GA IY+E+R+R L ++V GIPKTIDNDIP
Sbjct: 167 VMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESF 226
Query: 225 --------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP 276
AQ AI AA+VEA+S +NG+G+VKLMGR GFIA++A++ S DV+ CLIPE
Sbjct: 227 GFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFD 286
Query: 277 FYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLW 336
LE G+ E+IE+RL++ GH VIV+AEGAGQ L L DASGNK L D+G++
Sbjct: 287 IPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADLDLG--TDASGNKKLWDIGVY 341
Query: 337 ISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFT 396
+ +I + + K +KYIDP+YMIRA+P+NA+D +CT LAQ+AVHGA+AG+TGF
Sbjct: 342 LKDEITK-YLKKKKPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFI 400
Query: 397 VGPVNGRHAYIPFNRINER-QNQVVITDRMWARVLSSTNQPSFL-SANELAKFKREKPS 453
+G V+ + IP ++ + +V R+W R+L+ T QPSFL + +R+ S
Sbjct: 401 IGHVHNNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAITGQPSFLNNEEIERHQRRQLES 459
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 425 bits (1094), Expect = e-147
Identities = 196/377 (51%), Positives = 255/377 (67%), Gaps = 22/377 (5%)
Query: 78 RAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY 137
RAGPR+K+YF +EV A IVTCGGLCPGLN VIR+IV L +YGV I+GI GYRGF+
Sbjct: 40 RAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTL-EIYGVKNIVGIPFGYRGFF 98
Query: 138 SKN--TINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 195
K + L+ KVV +IH GG++LG SRGG TS IVDSI+ RGIN ++++GG+GT G
Sbjct: 99 EKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAG 158
Query: 196 AAVIYEEIRQRGLKVAVAGIPKTIDNDI--------------PAQRAINAAHVEAESIEN 241
A I+ E R+R +KV+V G+PKTIDNDI AQRAIN+A++EA S +
Sbjct: 159 ANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYH 218
Query: 242 GIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVI 301
GIG+VKLMGR GFIAM+A+L S VD CLIPE PF L+G G+ +E ++ G V+
Sbjct: 219 GIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVV 278
Query: 302 VIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPT 361
+AEGAGQDLL ++ N DASGN +L D+G+ + +IK HF + + ++KYIDPT
Sbjct: 279 CVAEGAGQDLLQKT----NATDASGNPVLGDIGVHLQQEIKKHFKDI-GVPADVKYIDPT 333
Query: 362 YMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVI 421
YMIRA +NASD + CT+L Q+AVHGA AG++G TVG N + Y+P + +V
Sbjct: 334 YMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDP 393
Query: 422 TDRMWARVLSSTNQPSF 438
RMW R L+ST QP F
Sbjct: 394 NSRMWHRCLTSTGQPDF 410
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 200 bits (510), Expect = 3e-60
Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 53/335 (15%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
I+T GG PG+N VIR +V + ++ GI GY G + LT + V+D+
Sbjct: 7 ILTSGGDAPGMNAVIRAVVRTAIKE---GLEVFGIYNGYLGLLEGDIKPLTREDVDDLIN 63
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT LG++R + ++++ GI+ + +IGGDG+ GAA++ EE
Sbjct: 64 RGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----G 118
Query: 210 VAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGRYCGF 255
+ V G+PKTIDNDI A AI+ A S I +V++MGR+ G+
Sbjct: 119 IPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASSH-ERIFIVEVMGRHAGW 177
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKR-LKENGHMVIVIAEGAGQDLLAE 314
+A+ A L + D LIPE P L E + E KR + H +IV+AEGA +
Sbjct: 178 LALAAGLAT-GADIILIPEEPADLIIEELIAEIKAKREARGKKHAIIVVAEGAIDQI--- 233
Query: 315 SLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDN 374
+G +LL + ++ + + ++ R +A D
Sbjct: 234 --------GENGAELLAAIEELLALGDFE-----------TRVTVLGHIQRGGTPSAFDR 274
Query: 375 VYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPF 409
V + L +AV + G TG+ VG N + ++P
Sbjct: 275 VLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPI 309
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 145 bits (370), Expect = 4e-40
Identities = 81/236 (34%), Positives = 122/236 (51%), Gaps = 39/236 (16%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V + G ++ GI GY G + + L K V+DI
Sbjct: 6 VLTSGGDAPGMNAAIRAVVRTAISE--G-LEVYGIYDGYAGLLEGDIVKLDLKSVSDIIN 62
Query: 155 RGGTILGTSRGGHDT-----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTILG++R +K +++++ GI+ + +IGGDG+ GA + E
Sbjct: 63 RGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------G 116
Query: 210 VAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGRYCGF 255
+ V G+P TIDNDI A AI+ A S E + +V++MGR+ G
Sbjct: 117 IPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRLRDTASSHER-VFIVEVMGRHAGD 175
Query: 256 IAMYATL-GSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG--HMVIVIAEGAG 308
+A++A + G +V LIPE PF +E L I+K +E G H +IV+AEG
Sbjct: 176 LALHAGIAGGAEV--ILIPEVPFDIE---ELCAKIKKG-RERGKKHAIIVVAEGVM 225
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 136 bits (344), Expect = 2e-36
Identities = 105/340 (30%), Positives = 162/340 (47%), Gaps = 43/340 (12%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINL-TPKVVNDIHK 154
++T GG CPGLN VIR +V YG +++GI G+RG +T+ L + V I
Sbjct: 4 VLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPLLDLEDVRGILP 62
Query: 155 RGGTILGTSRGG------HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGL 208
RGGTILG+SR KIV ++++ G++ + IGGDGT A + +GL
Sbjct: 63 RGGTILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLGIA----RRLADKGL 118
Query: 209 KVAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGRYCG 254
V G+PKTIDND+ A A++ H AES + + VV++MGR+ G
Sbjct: 119 P--VVGVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAES-HHRVMVVEVMGRHAG 175
Query: 255 FIAMYATL-GSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG-HMVIVIAEGAGQDLL 312
+IA+++ + G DV LIPE PF ++ + E + +R ++V+AEGA +
Sbjct: 176 WIALHSGIAGGADV--ILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGA-KPKG 229
Query: 313 AESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNAS 372
E + +DA G+ L +G W++ +I+ I + ++ R +A
Sbjct: 230 GEMVVQEGVKDAFGHVRLGGIGNWLAEEIERR------TGIETRATVLGHLQRGGSPSAF 283
Query: 373 DNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRI 412
D V T +AV G G V Y+P
Sbjct: 284 DRVLATRFGVAAVDLVHEGQFGHMVALRGTDIVYVPIAEA 323
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 135 bits (343), Expect = 3e-36
Identities = 93/328 (28%), Positives = 144/328 (43%), Gaps = 49/328 (14%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V G ++ GI GY G + L + V+DI R
Sbjct: 5 VLTSGGDAPGMNAAIRGVVRSA-IAEG-LEVYGIYEGYAGLVEGDIKELDWESVSDIINR 62
Query: 156 GGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGTI+G++R + K ++++ GI+ + +IGGDG+ GA ++ EE +
Sbjct: 63 GGTIIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGF 122
Query: 211 AVAGIPKTIDNDIPAQRAI----NAAHVEAESIEN---------GIGVVKLMGRYCGFIA 257
V G+P TIDNDI A E+I+ VV++MGR+CG IA
Sbjct: 123 NVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRIRDTASSHQRTFVVEVMGRHCGDIA 182
Query: 258 MYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG--HMVIVIAEGAGQDLLAES 315
+ A L + D IPE P E E + + I+KR +E G H ++++AEGA
Sbjct: 183 LEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKR-RERGKRHGIVIVAEGAIDF----- 235
Query: 316 LQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIR-AIPSNASDN 374
+ + L + V + + L ++ R P+ A D
Sbjct: 236 ----IPKPITEKLLAKLVEERLGFDTRATV---------LGHVQ-----RGGTPT-AFDR 276
Query: 375 VYCTLLAQSAVHGAVAGYTGFTVGPVNG 402
+ + L AV + G G VG N
Sbjct: 277 ILASRLGAEAVELLLEGTGGTPVGIQNL 304
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 110 bits (278), Expect = 2e-27
Identities = 92/332 (27%), Positives = 139/332 (41%), Gaps = 71/332 (21%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V G+ ++ GI GY G + + + L V+DI R
Sbjct: 5 VLTSGGDAPGMNAAIRGVV-RSAIAEGL-EVYGIRDGYAGLIAGDIVPLDRYSVSDIINR 62
Query: 156 GGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGT LG++R +K ++ ++ GI+ + +IGGDG+ GA + E
Sbjct: 63 GGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GF 116
Query: 211 AVAGIPKTIDNDIPA-------QRAINAAHVEA-------ESIENGIGVVKLMGRYCGFI 256
G+P TIDNDIP A+N VEA S I VV++MGR+CG I
Sbjct: 117 PCVGLPGTIDNDIPGTDYTIGFDTALNTV-VEAIDRIRDTSSSHQRISVVEVMGRHCGDI 175
Query: 257 AMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAGQ-DL 311
A+ A + + +IPE+ F E E K E G H ++V+AEG D
Sbjct: 176 ALAAGIAG-GAEFIVIPEAEFDRE------EVANRIKAGIERGKKHAIVVVAEGVYDVDE 228
Query: 312 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNA 371
LA+ ++ + L ++ R A
Sbjct: 229 LAKEIEEATGFETRATVL-------------------------------GHIQRGGSPTA 257
Query: 372 SDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR 403
D + + + AV +AG G VG N +
Sbjct: 258 FDRILASRMGAYAVELLLAGKGGLAVGIQNEQ 289
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 109 bits (274), Expect = 8e-27
Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 34/232 (14%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
I+T GG PG+N IR +V +YH + V GI GY+G + L K V+ I
Sbjct: 4 ILTSGGDAPGMNAAIRAVVRTAIYHGFEV---YGIRRGYKGLINGKIEPLESKNVSGIIH 60
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTILGT+R + K V++++ GI + +IGGDG+ GA +YEE
Sbjct: 61 RGGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GG 115
Query: 210 VAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGRYCGF 255
+ V G+P TIDNDIP A++ A S E V+++MGR+ G
Sbjct: 116 IPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHERAF-VIEVMGRHAGD 174
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG-HMVIVIAEG 306
+A+YA + + + +IPE + ++ L + ++++ + H +I++AEG
Sbjct: 175 LALYAGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEG 222
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 105 bits (264), Expect = 1e-25
Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 40/243 (16%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V + G+ ++ GI GY G + N L + V+DI +
Sbjct: 5 VLTSGGDAPGMNAAIRAVVRSAIAE--GL-EVYGIYEGYAGLVAGNIKQLDWESVSDIIQ 61
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT +G++R K ++++ GI+ + +IGGDG+ GA ++ E G
Sbjct: 62 RGGTFIGSARCPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSE---HGFN 118
Query: 210 VAVAGIPKTIDNDIP-------AQRAINAAHVEA-------ESIENGIGVVKLMGRYCGF 255
G+P TIDNDI A+N VEA S VV++MGR+CG
Sbjct: 119 --CVGLPGTIDNDICGTDYTIGFDTALNTI-VEAIDRIRDTASSHQRTFVVEVMGRHCGD 175
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAGQDL 311
+A+ A + D IPE+PF+ E E KR +E G H ++++AEGA +
Sbjct: 176 LALVAGIAG-GADYIFIPEAPFWEE------ELCNRLKRGRERGKRHNIVIVAEGAIDPI 228
Query: 312 LAE 314
+E
Sbjct: 229 TSE 231
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 102 bits (257), Expect = 4e-24
Identities = 86/280 (30%), Positives = 135/280 (48%), Gaps = 47/280 (16%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIH 153
I+T GG C GLN VIR +V YG +++GI +G ++ I L V+D+
Sbjct: 9 ILTSGGDCAGLNAVIRAVVHRARGTYGW-EVIGIRDATQGLMARPPQYIELDLDQVDDLL 67
Query: 154 KRGGTILGTSRGGH-------DTSK------IVDSIQDRGINQVYIIGGDGTQKGAAVIY 200
+ GGTILGT+ G D S I+D G++ + IGGDG+ I
Sbjct: 68 RMGGTILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLA----IL 123
Query: 201 EEIRQRGLKVAVAGIPKTIDNDIPAQR-------AINAA-------HVEAESIENGIGVV 246
+ Q+G + + GIPKTIDND+ A A+N A H A S N + ++
Sbjct: 124 RRLAQQG-GINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAAS-HNRVMIL 181
Query: 247 KLMGRYCGFIAMYATL-GSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIA 304
++MGR G IA+ A + G DV LIPE P+ LE + + I +R +E ++V++
Sbjct: 182 EVMGRDAGHIALAAGIAGGADV--ILIPEIPYTLE---NVCKKIRERQEEGKNFCLVVVS 236
Query: 305 EGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDH 344
E + E + + + A G +G +++ +I +
Sbjct: 237 EA----VRTEEGEQVTKTQALGEDRYGGIGQYLAEQIAER 272
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 92.8 bits (231), Expect = 2e-20
Identities = 107/415 (25%), Positives = 172/415 (41%), Gaps = 95/415 (22%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGV----SKILGIDGGYRGFYSKNTINLTPKVVND 151
++T GGL P L++ V GL Y +I+ GY+G ++I +TP V +
Sbjct: 8 LLTAGGLAPCLSS----AVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRAN 63
Query: 152 ---IHKRGGTILGTSR----------------GGHDTSKI-VDSIQDRGINQVYIIGGDG 191
+H+ GG+ +G SR G + K+ + + G++ ++ IGGD
Sbjct: 64 AGLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDD 123
Query: 192 TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQR----AINAAHVEAESIENGIG--- 244
T AA + + + G + V G+PKTIDND+ R A AA A +N I
Sbjct: 124 TNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQGARFFDNVINEHS 183
Query: 245 -------VVKLMGRYCGFIAMYATLGSR-------------------DVDCCLIPESPFY 278
+ ++MGR CG++ R D+ +PE F
Sbjct: 184 ANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMAFD 243
Query: 279 LEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQ---DASGNKLLQ--DV 333
LE E E ++ + E G++ I ++EGAG D + +++ ++ DA G+ L +
Sbjct: 244 LEAEA---ERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINP 300
Query: 334 GLWISHKIKDHFARL---HKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQS----AVH 386
G W + FA L K+ + Y R+ P+NA D L +S AV
Sbjct: 301 GAWFA----KQFAELLGAEKVMVQ----KSGYFARSAPANAED----LRLIKSMVDLAVE 348
Query: 387 GAVAGYTGFTVG---PVNGRHAYIPFNRINERQNQVVITDRMW-ARVLSSTNQPS 437
A+ G +G +G G+ I F RI + + T W +L QP
Sbjct: 349 CALRGVSG-VIGHDEEQGGKLRAIEFPRI--KGGKAFDTSTPWFTELLDEIGQPY 400
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 84.1 bits (209), Expect = 1e-17
Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 47/258 (18%)
Query: 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP------ 224
++++ + I + GG+ + A + + ++ G + GIPKTIDND+P
Sbjct: 94 RLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCP 153
Query: 225 ----AQRAINAAHVEA----ESIENG--IGVVKLMGRYCGFIAMYATLGSRDVDCC---- 270
A + I + +EA ++ N + ++++MGR+ G++A A L ++ D
Sbjct: 154 GFGSAAKYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHLI 213
Query: 271 LIPESPFYLEGEGGLYEFIEK---RLKENGHMVIVIAEGA-GQD--LLAESLQSMNQQDA 324
+PE PF E +F+ +K G+ V+V++EG D +AE+ +DA
Sbjct: 214 YLPERPFDEE------KFLADVRAIVKRYGYCVVVVSEGIRDADGKFIAEAG---LAEDA 264
Query: 325 SGNKLLQDVGLWISHKIKDHFARLHKMAINLKY--IDPTYMIRAIPSNAS--DNVYCTLL 380
G+ L V +++ IK+ + K Y+ RA AS D +
Sbjct: 265 FGHAQLGGVAPVLANLIKE--------KLGKKVHWAVLDYLQRAARHIASKTDVEEAYAV 316
Query: 381 AQSAVHGAVAGYTGFTVG 398
++AV A+AG G
Sbjct: 317 GKAAVEYALAGKNGVMPA 334
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 75.8 bits (187), Expect = 1e-14
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 22/219 (10%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
I+ G G+N R V Y + ++ I G+ G + LT V
Sbjct: 394 IIHVGAPAGGMNAATRSAV--RYALARGHTVIAIHNGFSGLARHDVRELTWSDVEGWVGE 451
Query: 156 GGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--GLKVA 211
GG+ LGT+R G D I Q I+ + IIGG + A + R++ ++
Sbjct: 452 GGSELGTNRSLPGDDLGTIAYYFQQHKIDGLIIIGGFEAFE-ALYQLDAAREKYPAFRIP 510
Query: 212 VAGIPKTIDNDIP-------AQRAINAAHVEAESI-ENGIG------VVKLMGRYCGFIA 257
+ IP TI N++P + A+N ++I ++ VV+ MG Y G++A
Sbjct: 511 MVVIPATISNNVPGTEYSLGSDTALNEITEYCDNIKQSASASKRRVFVVETMGGYSGYLA 570
Query: 258 MYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 296
A L + D IPE L+ E +++ E
Sbjct: 571 TMAGL-ATGADAAYIPEEGISLKDLQEDIEHLKETFAEG 608
Score = 68.5 bits (168), Expect = 3e-12
Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 59/259 (22%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFY--SKNTINLTPKVVNDI 152
++T GG G+N +R +V +Y G ++ I GY+G N + V I
Sbjct: 5 VLTSGGDAQGMNAAVRAVVRMAIY--VG-CRVYAIREGYQGLVDGGDNIEEAQWEDVRGI 61
Query: 153 HKRGGTILGTSR--------GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV------ 198
GGTI+GT+R G K ++ GI+ + +IGGDG+ GA +
Sbjct: 62 LSLGGTIIGTARCKEFRERPG---RLKAARNLVSNGIDALVVIGGDGSLTGADLFREEWP 118
Query: 199 -----------IYEEIRQRGLKVAVAGIPKTIDNDIPAQ--------------RAINAAH 233
I E + + + G+ +IDND+ AI+A
Sbjct: 119 SLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHRICEAIDAIS 178
Query: 234 VEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRL 293
A+S + VV++MGR+CG++A+ A + + D IPE P E G + + +L
Sbjct: 179 STAQSHQRAF-VVEVMGRHCGYLALMAAI-ATGADYVFIPERP----PEEGWEDQLCHKL 232
Query: 294 KENGHM-----VIVIAEGA 307
K N ++++AEGA
Sbjct: 233 KRNRKAGKRKTIVIVAEGA 251
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 75.8 bits (186), Expect = 2e-14
Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 23/192 (11%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
I+ GG PG + VI I S+++G GG G YSKN + +T ++N
Sbjct: 182 IILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNL 241
Query: 156 GG-TILGTSRGG----HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GG +L + RG D I + + +N + IIGGDG+ AA+I E +R + +
Sbjct: 242 GGFNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPI 301
Query: 211 AVAGIPKTIDNDIPAQRAI-------NAAHVEAESI----------ENGIGVVKLMGRYC 253
++ GIPKTID D+ ++ AI A +E I N VV++MGR
Sbjct: 302 SIIGIPKTIDGDLKSE-AIEISFGFDTATKTYSEVIGNLCTDVKTGHNVYHVVRVMGRSA 360
Query: 254 GFIAMYATLGSR 265
+ + L +R
Sbjct: 361 SHVVLECALQTR 372
Score = 32.3 bits (73), Expect = 0.57
Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 37/245 (15%)
Query: 88 VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY----SKNTIN 143
+S E+ IV PG V+ CGLY + K G+ + G Y +K I
Sbjct: 833 ISFEIKIGIVFLSRQAPGAMNVL----CGLYRRLKLLK--GVCIAFYGLYGLLNNKYIII 886
Query: 144 LTPKVVNDIHKRGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV 198
+ +++ G + G S + +K+ +++ + +N + + G + T AA+
Sbjct: 887 DDDNIAKHVNQGGLELTGNSPEHSLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAAL 946
Query: 199 IYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAM 258
+ E ++ + +V GIP T N N H E IE +G + +
Sbjct: 947 LAEYFLEKKIPTSVVGIPLTGSN--------NLIH---ELIETCVG-------FDSSTKV 988
Query: 259 YATL-GSRDVDCCLIPESPFY--LEGEGGLYEFIEKRLKENGHMVIVIAE-GAGQDLLAE 314
YA+L G+ D +P+ + L G +E +E L+ + +MVI+ E GA L
Sbjct: 989 YASLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWR 1048
Query: 315 SLQSM 319
+Q +
Sbjct: 1049 VVQDI 1053
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 74.7 bits (184), Expect = 2e-14
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 30/204 (14%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYH----MYGVSKILGIDGGYRGFYSKNTINLTPKVVND 151
++ GG PG + VI GL+ + SK+ G GG G N + LT ++++
Sbjct: 72 VILSGGQAPGGHNVI----SGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDT 127
Query: 152 IHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR 206
GG I+G+ R +T +K + + + ++ + IIGGD + AA++ E +
Sbjct: 128 YRNTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKH 187
Query: 207 GLKVAVAGIPKTIDNDIPAQ----------------RAINAAHVEAESIENGIGVVKLMG 250
GLK V G+PKTID D+ Q I +A S + ++LMG
Sbjct: 188 GLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKKYWHFIRLMG 247
Query: 251 RYCGFIAMYATLGSRDVDCCLIPE 274
R IA+ L + + C+I E
Sbjct: 248 RSASHIALECALQTHP-NVCIIGE 270
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 69.9 bits (171), Expect = 1e-12
Identities = 67/256 (26%), Positives = 115/256 (44%), Gaps = 53/256 (20%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYS--KNTINLTPKVVNDI 152
++T GG G+N +R +V G+Y G +K+ + GY G + V++
Sbjct: 8 VLTSGGDAQGMNAAVRAVVRMGIY--VG-AKVFFVYEGYEGLVKGGDYIKQAEWESVSNW 64
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAV--------- 198
+ GGTI+G++R + ++ RGI + +IGGDG+ GA +
Sbjct: 65 LQEGGTIIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLL 124
Query: 199 --------IYEEIRQRGLKVAVAGIPKTIDND-------IPAQRA-------INAAHVEA 236
I EE + + + G+ +IDND I A ++A A
Sbjct: 125 EELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALHRICEVVDAITTTA 184
Query: 237 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 296
+S + V+++MGR+CG++A+ + L + D IPE P E G + + +RL E+
Sbjct: 185 QSHQRTF-VLEVMGRHCGYLALVSGLAT-GADWIFIPERP----PEDGWEDQMCRRLSEH 238
Query: 297 GHM-----VIVIAEGA 307
+I++AEGA
Sbjct: 239 RSRGKRLNIIIVAEGA 254
Score = 64.8 bits (158), Expect = 4e-11
Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 22/203 (10%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
IV G G+N +R V Y + + I G+ G + L V R
Sbjct: 394 IVNVGAPAAGMNAAVRSAV--RYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGR 451
Query: 156 GGTILGTSR--GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--GLKVA 211
GG+ LGT R D I + Q GI+ + I+GG KG + E R++ +
Sbjct: 452 GGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQL-REAREQYEEFCIP 510
Query: 212 VAGIPKTIDNDIP-------AQRAINAA-------HVEAESIENGIGVVKLMGRYCGFIA 257
+ IP T+ N++P + A+NA A + + +V+ MG YCG++A
Sbjct: 511 MVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTKRRVFIVETMGGYCGYLA 570
Query: 258 MYATLGSRDVDCCLIPESPFYLE 280
L D + E PF +
Sbjct: 571 TMTGLAV-GADAAYVFEEPFNIR 592
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 68.4 bits (168), Expect = 2e-12
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGV------SKILGIDGGYRGFYSKNTINLTPKVV 149
++ GG PG + VI GL+ G+ SK+ G GG G + I +T +V+
Sbjct: 75 VILSGGQAPGGHNVI----AGLFD--GLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVI 128
Query: 150 NDIHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR 204
++ GG ++G+ R +T +++++ ++ + IIGGD + AA++ E
Sbjct: 129 DEYRNTGGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFA 188
Query: 205 QRGLKVAVAGIPKTIDND 222
+ G K V G+PKTID D
Sbjct: 189 KHGCKTQVIGVPKTIDGD 206
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 68.4 bits (167), Expect = 3e-12
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 22/200 (11%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
IV GG PG + VI + L S + G GG G + I L + +
Sbjct: 77 IVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNT 136
Query: 156 GG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GG ++ + R +T + ++ + ++ + +IGGD + AA++ E R +GLK
Sbjct: 137 GGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKT 196
Query: 211 AVAGIPKTIDND-----IPAQRAINAA-----------HVEAESIENGIGVVKLMGRYCG 254
V G+PKTID D I + A +A S VKLMGR
Sbjct: 197 RVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSAS 256
Query: 255 FIAMYATLGSRDVDCCLIPE 274
IA+ L + + C+I E
Sbjct: 257 HIALECALKTHP-NICIISE 275
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 58.2 bits (141), Expect = 4e-09
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGV----SKILGIDGGYRGFYSKNTINLTPKVVND 151
+V CG PG + VI GL+ S +LG GG G +++ T+ +T V++
Sbjct: 84 VVFCGRQSPGGHNVI----WGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLST 139
Query: 152 IHKRGG-TILGTSRGGHDTSKIVD----SIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR 206
+GG +LG ++ T++ V+ + + ++ + IIGG + AA + E +
Sbjct: 140 YKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEA 199
Query: 207 GLKVAVAGIPKTIDNDIPAQ----------------RAINAAHVEAESIENGIGVVKLMG 250
K V G+P T++ D+ Q + I+ +A S E ++LMG
Sbjct: 200 KCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 259
Query: 251 RYCGFIAMYATLGS 264
R +A+ L S
Sbjct: 260 RKASHVALECALQS 273
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 58.1 bits (140), Expect = 6e-09
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 27/194 (13%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
+V GG G + VI ++ + S++ G GG G YS+ LT +N I +
Sbjct: 107 VVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQ 166
Query: 156 GG-TILGTSRGGHDTSK-------IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG 207
GG I+ + R +T + I + ++ ++ + +IGGD + AAV+ E ++
Sbjct: 167 GGFNIICSGRHKIETEEQMRASLEICEKLK---LHGLVVIGGDDSNTNAAVLAEYFKRNS 223
Query: 208 LKVAVAGIPKTIDNDIPAQ---------RAINAAHVEAESIENGIGV-------VKLMGR 251
V G PKTID D+ + A+ + SI + I V+LMGR
Sbjct: 224 SSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGR 283
Query: 252 YCGFIAMYATLGSR 265
I + L +R
Sbjct: 284 SASHITLECGLQTR 297
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 50.2 bits (120), Expect = 1e-06
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 31/193 (16%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLY-----HMYGVSKILGIDGGYRGFYSKNTINLTPKVVN 150
+V GG PG + VI G++ H G S + G GG G + LT + +
Sbjct: 101 VVLSGGQAPGGHNVI----SGIFDYLQEHAKG-SVLYGFKGGPAGIMKCKYVELTAEFIY 155
Query: 151 DIHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ 205
+GG ++ + R +T + ++ ++ + +IGGD + A ++ E R
Sbjct: 156 PYRNQGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRA 215
Query: 206 RGLKVAVAGIPKTIDNDIPAQRA----------------INAAHVEAESIENGIGVVKLM 249
+ LK V G PKTID D+ ++ I ++A S V+LM
Sbjct: 216 KNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARSTGKYYHFVRLM 275
Query: 250 GRYCGFIAMYATL 262
GR I + L
Sbjct: 276 GRAASHITLECAL 288
>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC [Protein
fate, Degradation of proteins, peptides, and
glycopeptides, Cellular processes, Sporulation and
germination].
Length = 615
Score = 34.0 bits (78), Expect = 0.15
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 151 DIHKR---GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGD----GTQKGAAVIYEEI 203
DIH GG I G S G T ++ +I + I Q I G+ G K I+E+I
Sbjct: 512 DIHVNVIGGGRIDGPSAGAAITLCMISAILGKPIRQDVAITGEISLRGKIKPVGGIFEKI 571
Query: 204 ---RQRGLKVAVAGIPKTIDNDIPAQ 226
+Q G+K V IP+ D+P
Sbjct: 572 YGAKQAGIKTVV--IPEENLKDVPQG 595
>gnl|CDD|215977 pfam00532, Peripla_BP_1, Periplasmic binding proteins and sugar
binding domain of LacI family. This family includes the
periplasmic binding proteins, and the LacI family
transcriptional regulators. The periplasmic binding
proteins are the primary receptors for chemotaxis and
transport of many sugar based solutes. The LacI family
of proteins consist of transcriptional regulators
related to the lac repressor. In this case, generally
the sugar binding domain binds a sugar which changes the
DNA binding activity of the repressor domain
(pfam00356).
Length = 281
Score = 31.7 bits (72), Expect = 0.66
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 273 PESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASG 326
+ PF + L + I K K++G V ++A G G+D L ++ + A G
Sbjct: 11 LDEPFSQD----LVKGITKAAKDHGFDVFLLAVGDGEDTLTNAIDLLLASGADG 60
>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport
systems, periplasmic component [Amino acid transport and
metabolism].
Length = 366
Score = 31.6 bits (72), Expect = 0.84
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 148 VVNDIHKRGGTIL---GTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR 204
+ GG ++ + G D S +V I+ G + V + G AA+ + R
Sbjct: 168 FKAALKALGGEVVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGGYGPD---AALFLRQAR 224
Query: 205 QRGLKVAVAGI 215
++GLK + G
Sbjct: 225 EQGLKAKLIGG 235
>gnl|CDD|182193 PRK10014, PRK10014, DNA-binding transcriptional repressor MalI;
Provisional.
Length = 342
Score = 31.2 bits (71), Expect = 1.0
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 275 SPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASG 326
+PFY E GL E +E G MV ++ G + LA+ ++ Q G
Sbjct: 76 APFYAELTAGLTEALE----AQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDG 123
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 30.5 bits (69), Expect = 2.1
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 156 GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215
+ T+ DT V + +RG++ + GGDGT A + E + G V V GI
Sbjct: 78 QESTPRTTA--EDTINAVRRMVERGVDLIVFAGGDGT---ARDVAEAV---GADVPVLGI 129
Query: 216 P 216
P
Sbjct: 130 P 130
>gnl|CDD|199895 cd06167, LabA_like, LabA_like proteins. A well conserved group of
domains found in all three kingdoms of life, with no
defined function. LabA, a member from Synechococcus
elongatus PCC 7942, has been shown to play a role in
cyanobacterial circadian timing. It is required for
negative feedback regulation of the
autokinase/autophosphatase KaiC, a central component of
the circadian clock system. In particular, LabA seems
necessary for KaiC-dependent repression of gene
expression. Another member is the N-terminal domain of
limkain b1, a human autoantigen associated with
cytoplasmic vesicles. Curiously, a gene labeled NicB
from Pseudomonas putida S16, which is described as a
putative NADH-dependent hydroxylase involved in the
microbial degradation of nicotine also falls in the
LabA_like family. LabA_like domains exhibit some
similarity to the NYN domain, a distant relative of the
PIN-domain nucleases.
Length = 151
Score = 29.0 bits (65), Expect = 3.2
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223
++ +R I+ + ++ GD E +R+RG +V V G ++ + +
Sbjct: 93 DALELAYERRIDTIVLVSGDSDFVPLL---ERLRERGKRVIVVGFRRSASSAL 142
>gnl|CDD|107306 cd06311, PBP1_ABC_sugar_binding_like_3, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 274
Score = 29.6 bits (67), Expect = 3.3
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 178 DRGINQVYI----IGGDGTQKG---AAVIYEEIRQRGLKVAVAGIPKTIDND 222
DRG++ + GD G I ++ G V + GIP IDN+
Sbjct: 92 DRGLSSPGAQDLYVAGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDNE 143
>gnl|CDD|236413 PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.
Length = 367
Score = 29.6 bits (67), Expect = 4.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 21 EDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDT 59
ED HL D+I D +P AAY ++K+ +V DT
Sbjct: 269 EDDSHLGDFIED-QDATSPADH-AAYELLKEQLEDVLDT 305
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 29.5 bits (67), Expect = 4.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 384 AVHGAVAGYTGFTVGPVNGRHAYIP 408
A HG GY G +V PV HA P
Sbjct: 617 AAHGESEGYEGLSVNPVPLDHANCP 641
>gnl|CDD|107257 cd01544, PBP1_GalR, Ligand-binding domain of DNA transcription
repressor GalR which is one of two regulatory proteins
involved in galactose transport and metabolism.
Ligand-binding domain of DNA transcription repressor
GalR which is one of two regulatory proteins involved in
galactose transport and metabolism. Transcription of the
galactose regulon genes is regulated by Gal
iso-repressor (GalS) and Gal repressor (GalR) in
different ways, but both repressors recognize the same
DNA binding site in the absence of D-galactose. GalR is
a dimeric protein like GalS and is exclusively involved
in the regulation of galactose permease, the
low-affinity galactose transporter. GalS is involved in
regulating expression of the high-affinity galactose
transporter encoded by the mgl operon. GalS and GalR are
members of the LacI-GalR family of transcription
regulators and both contain the type I periplasmic
binding protein-like fold. Hence, they are structurally
homologous to the periplasmic sugar binding of ABC-type
transport systems.
Length = 270
Score = 28.6 bits (65), Expect = 6.4
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR 206
K +D + + G ++ IGG+ E+ R+
Sbjct: 100 VEKALDYLLELGHTRIGFIGGEEKTTDGHEYIEDPRET 137
>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase.
Length = 496
Score = 28.5 bits (63), Expect = 8.1
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 74 THFRRAGPRQKVYFVSDEVHACIVTCGG----LCPGLNTV-IREIVCGLYHM-YGVSKIL 127
T+ R R+ ++ V DE++A V GG + +N V I E+ L H+ Y +SK +
Sbjct: 222 TNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM 281
Query: 128 GIDGGYRGF-YSKN 140
G+ G G YS N
Sbjct: 282 GLPGFRVGIVYSFN 295
>gnl|CDD|222604 pfam14222, MOR2-PAG1_N, Cell morphogenesis N-terminal. This family
is the conserved N-terminal region of proteins that are
involved in cell morphogenesis.
Length = 538
Score = 28.8 bits (65), Expect = 8.1
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 208 LKVAVAGIPKTIDNDIPAQRAIN-----AAHVEAE 237
+VAV IP+ + + IP I HV++
Sbjct: 448 FRVAVQAIPRCLSDSIPFNSLIELLCRGTVHVDSN 482
>gnl|CDD|193541 cd05665, M20_Acy1_IAAspH_bact, M20 Peptidases Aminoacyclase-1
indole-3-acetic-L-aspartic acid hydrolase from bacteria
and archaea. Peptidase M20 family, Bacterial and
archaeal Aminoacyclase-1 indole-3-acetic-L-aspartic acid
hydrolase (IAA-Asp hydrolase; IAAspH; IAAH; IAA
amidohydrolase; EC 3.5.1.-) subfamily. IAAspH hydrolyzes
indole-3-acetyl-N-aspartic acid (IAA or auxin) to
indole-3-acetic acid. Genes encoding IAA-amidohydrolases
were first cloned from Arabidopsis; ILR1, IAR3, ILL1 and
ILL2 encode active IAA- amino acid hydrolases, and three
additional amidohydrolase-like genes (ILL3, ILL5, ILL6)
have been isolated. In higher plants, the growth
regulator indole-3-acetic acid (IAA or auxin) is found
both free and conjugated via amide bonding to a variety
of amino acids and peptides, and via an ester linkage to
carbohydrates. IAA-Asp conjugates are involved in
homeostatic control, protection, storing and subsequent
use of free IAA. IAA-Asp is also found in some plants as
a unique intermediate for entering into IAA
non-decarboxylative oxidative pathway. IAA
amidohydrolase cleaves the amide bond between the auxin
and the conjugated amino acid. Enterobacter agglomerans
IAAspH has very strong enzyme activity and substrate
specificity towards IAA-Asp, although its substrate
affinity is weaker compared to Arabidopsis enzymes of
the ILR1 gene family. Enhanced IAA-hydrolase activity
has been observed during clubroot disease in Chinese
cabbage.
Length = 415
Score = 28.3 bits (64), Expect = 9.3
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 24/97 (24%)
Query: 196 AAVIYEEIRQRGLKV----------AVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGV 245
A I EE+ + G ++ A G+P +RA+ + E +E
Sbjct: 24 TARIAEELEELGYELALGREALDSDARMGVPDDEVLKAARERAL-EQGADEELLE----- 77
Query: 246 VKLMGRYCGFIAMY------ATLGSR-DVDCCLIPES 275
K+ G + G +A T+ R D+D + ES
Sbjct: 78 -KMAGGFTGVVATLDTGRPGPTIALRFDIDALPVTES 113
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.415
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,636,202
Number of extensions: 2353742
Number of successful extensions: 2351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2269
Number of HSP's successfully gapped: 53
Length of query: 458
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 358
Effective length of database: 6,502,202
Effective search space: 2327788316
Effective search space used: 2327788316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)