RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012698
(458 letters)
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 528 bits (1363), Expect = 0.0
Identities = 158/461 (34%), Positives = 235/461 (50%), Gaps = 40/461 (8%)
Query: 1 MGHSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLP--TYPNPLQFNAAYSVVKQYFVNVDD 58
+ + K+V +L V + LP YPNP + ++ F + D
Sbjct: 3 VESRSRVTSKLVKAH-RAMLNSVTQEDLKVDRLPGADYPNPSKKYSSR----TEFRDKTD 57
Query: 59 TVSQKIVV-------HKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIR 111
+ + S A R +++F E IVTCGG+CPGLN VIR
Sbjct: 58 YIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIR 117
Query: 112 EIVCGLYHMYGVSKILGIDGGYRGFY---SKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168
I ++Y V +++G GY G S+ I L V +IH GGTILG+SRG D
Sbjct: 118 SITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQD 177
Query: 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP---- 224
++VD+++ G+N ++ +GGDGTQ+GA VI +E ++RG+ ++V G+PKTIDND+
Sbjct: 178 PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHR 237
Query: 225 ----------AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPE 274
A +AI AA+ EA S G+GVVKLMGR GFIA A + S + CL+PE
Sbjct: 238 TFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPE 297
Query: 275 SPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVG 334
+P + + +E+R + VI++AEG GQD S DASGNK L D+G
Sbjct: 298 NPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGRGS----GGYDASGNKKLIDIG 350
Query: 335 LWISHKIKDHFARLH--KMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY 392
+ ++ K+K +KYIDP+YMIRA P +A+D ++C LA AVH A+AG
Sbjct: 351 VILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGA 410
Query: 393 TGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSST 433
TG + + + +P + + + ++W +V T
Sbjct: 411 TGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREIT 451
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 292 bits (748), Expect = 2e-93
Identities = 91/480 (18%), Positives = 151/480 (31%), Gaps = 114/480 (23%)
Query: 28 DYIPDLPT------------YPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTH 75
YIP LP Y + +K++F N T I+ +
Sbjct: 12 KYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKN---TYGLPIISFTEGESSLS 68
Query: 76 FRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRG 135
F S ++ I+ GG PG + VI + + SK+ G GG G
Sbjct: 69 F------------SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLG 116
Query: 136 FYSKNTINLTPKVVNDIHKRGGTILGTSRGGH-----DTSKIVDSIQDRGINQVYIIGGD 190
+ I LT ++N GG + +S +K + ++ +N + IIGGD
Sbjct: 117 LLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGD 176
Query: 191 GTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP----------------AQRAINAAHV 234
+ AA++ E ++ G + V G+PKTID D+ I
Sbjct: 177 DSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCR 236
Query: 235 EAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGG-----LYEFI 289
+A S + VKLMGR +A+ L + + C++ E + + I
Sbjct: 237 DAMSTKKYWHFVKLMGRSASHVALECALKTHP-NICIVSEEVLAKKKTLSEIIDEMVSVI 295
Query: 290 EKRLKE-NGHMVIVIAEG--------------------------------AGQDLLAESL 316
KR + V+++ EG +++ L
Sbjct: 296 LKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKL 355
Query: 317 QSMNQQ--------------------DASGNKLLQDVGL--WISHKIKDHFARLHKMAIN 354
+ D GN + V I+ + K
Sbjct: 356 SDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEY 415
Query: 355 LKYIDP-----TYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPF 409
P Y R+ + D+ YC L +AV + G TG+ N +
Sbjct: 416 KGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDW 475
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 161 bits (410), Expect = 5e-46
Identities = 93/352 (26%), Positives = 143/352 (40%), Gaps = 79/352 (22%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N +R +V +YH V ++ GI GY G S L V DI
Sbjct: 6 VLTSGGDSPGMNAAVRAVVRKAIYH--DV-EVYGIYNGYAGLISGKIEKLELGSVGDIIH 62
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT L T+R + K + +++ GI + +IGGDG+ GA + E G
Sbjct: 63 RGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH----GFP 118
Query: 210 VAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGRYCGF 255
G+P TIDNDIP AI+ A S E V+++MGR+ G
Sbjct: 119 --CVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMGRHAGD 175
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEGAGQDLLAE 314
IA++A L + LIPE+ + + + +++ + H +I++AEG G
Sbjct: 176 IALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVG------ 225
Query: 315 SLQSMNQQDASGNKLLQDVGLWISHKIKDHF---ARLHKMAINLKYI----DPTYMIRAI 367
G+ +I++ R L +I P+
Sbjct: 226 ------------------SGVEFGKRIEEETNLETR----VSVLGHIQRGGSPS------ 257
Query: 368 PSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQV 419
A+D V + L AV + G G VG N + I E ++ V
Sbjct: 258 ---AADRVLASRLGAYAVELLLEGKGGRCVGIQNNKLVDHDIIEILETKHTV 306
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 159 bits (406), Expect = 1e-45
Identities = 85/343 (24%), Positives = 136/343 (39%), Gaps = 79/343 (23%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V L G+ +++GI GY G Y + L V+D+
Sbjct: 7 VLTSGGDAPGMNAAIRGVVRSALTE--GL-EVMGIYDGYLGLYEDRMVQLDRYSVSDMIN 63
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT LG++R +++++ RGI+ + +IGGDG+ GA + E G
Sbjct: 64 RGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM----GFP 119
Query: 210 VAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGRYCGF 255
G+P TIDNDI AI+ + S + I VV++MGRYCG
Sbjct: 120 --CIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQR-ISVVEVMGRYCGD 176
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEGAGQDLLAE 314
+ + A + + ++PE F E L I+ + + H ++ I E
Sbjct: 177 LTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD----- 227
Query: 315 SLQSMNQQDASGNKLLQDVGLWISHKIKDHF---ARLHKMAINLKYI----DPTYMIRAI 367
++H I+ R A L +I P
Sbjct: 228 -------------------VDELAHFIEKETGRETR----ATVLGHIQRGGSPV------ 258
Query: 368 PSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFN 410
D + + + A+ +AGY G VG N + +
Sbjct: 259 ---PYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDII 298
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 158 bits (402), Expect = 6e-45
Identities = 85/364 (23%), Positives = 138/364 (37%), Gaps = 79/364 (21%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
I+T GG PG+N +R + + + G+ ++ GI G+ G + + L + V +
Sbjct: 6 ILTSGGDAPGMNAAVRAVTRVAIAN--GL-EVFGIRYGFAGLVAGDIFPLESEDVAHLIN 62
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
GT L ++R ++ ++ GI+ V +IGGDG+ GA + G
Sbjct: 63 VSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH----GFN 118
Query: 210 VAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGRYCGF 255
G+P TIDNDIP A AI+ A S + +V +MGR CG
Sbjct: 119 --SIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHR-VFIVNVMGRNCGD 175
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEGAGQDLLAE 314
IAM + D +IPE P+ +E + +++ + H ++V+AEG
Sbjct: 176 IAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVM------ 225
Query: 315 SLQSMNQQDASGNKLLQDVGLWISHKIKDHF---ARLHKMAINLKYI----DPTYMIRAI 367
++K + R A L ++ PT
Sbjct: 226 ------------------TADQFMAELKKYGDFDVR----ANVLGHMQRGGTPT------ 257
Query: 368 PSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWA 427
SD V + L AVH + G G VG NG+ + + ++
Sbjct: 258 ---VSDRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFDESHRGDYDLLKLN 314
Query: 428 RVLS 431
LS
Sbjct: 315 ADLS 318
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 156 bits (396), Expect = 3e-43
Identities = 62/342 (18%), Positives = 119/342 (34%), Gaps = 53/342 (15%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
GG+ +N ++ + +I G G +++ I+ + I
Sbjct: 8 YAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISA 67
Query: 155 ---RGGTILGTSR--------GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203
G+ R + ++++ + I + GG + + +
Sbjct: 68 LRYTPSGAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLS 127
Query: 204 RQRGLKVAVAGIPKTIDNDIP------------------AQRAINAAHVEAESIENGIGV 245
G + +PKT+DND+P A + + + V
Sbjct: 128 GTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSAT-STKVFV 186
Query: 246 VKLMGRYCGFIAMYATLGSRD----VDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVI 301
+++MGR+ G+IA L S L PE F + ++ +K+ G+ +
Sbjct: 187 LEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFGYCSV 243
Query: 302 VIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKY--ID 359
V++EG + + L +DA G+ L V ++ +K+ + LKY
Sbjct: 244 VVSEGV-KGDDGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEG--------LGLKYHWGV 294
Query: 360 PTYMIRA---IPSNASDNVYCTLLAQSAVHGAVAGYTGFTVG 398
Y+ RA I S +D + Q+AV AV G+
Sbjct: 295 ADYLQRAARHIAS-KTDVEQAYAMGQAAVEFAVQGHNSVMPT 335
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 155 bits (393), Expect = 5e-41
Identities = 60/365 (16%), Positives = 111/365 (30%), Gaps = 71/365 (19%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTIN-LTPKVVNDIH 153
IV G G+N+ + + + G + I G+ G ++ L K +
Sbjct: 398 IVNVGAPAGGINSAVYSMATYCMSQ--GH-RPYAIYNGWSGLARHESVRSLNWKDMLGWQ 454
Query: 154 KRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLK 209
RGG+ +GT+R D I Q + + I+GG + + +
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFR 514
Query: 210 VAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGRYCGF 255
+ + IP T+ N++P + A S VV G G+
Sbjct: 515 IPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGY 574
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-----GHMVIVIAEGAGQD 310
+A YA+L +PE LE E++ + ++ +I+ + A +
Sbjct: 575 LATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFGKLILKSTNASKA 633
Query: 311 LLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHF-ARLHKMAINLKYI----DPTYMIR 365
L A L + I+ + F A+ ++ P+
Sbjct: 634 LSATKLAEV-----------------ITAEADGRFDAK----PAYPGHVQQGGLPS---- 668
Query: 366 AIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINE-------RQNQ 418
D T +A AV + I++ + +
Sbjct: 669 -----PIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSH 723
Query: 419 VVITD 423
VV
Sbjct: 724 VVYNS 728
Score = 132 bits (335), Expect = 2e-33
Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 53/258 (20%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTIN---LTPKVVND 151
++T GG PG+N+ +R IV ++ G + + GY G + V
Sbjct: 8 VMTSGGDAPGMNSNVRAIVRSAIFK--GC-RAFVVMEGYEGLVRGGPEYIKEFHWEDVRG 64
Query: 152 IHKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE---- 202
GGT +GT+R + + G++ + + GGDG+ GA + E
Sbjct: 65 WSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSL 124
Query: 203 -------------IRQRGLKVAVAGIPKTIDNDIP--------------AQRAINAAHVE 235
+R + + G +IDND+ +AI+
Sbjct: 125 IEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAIDYVEAT 184
Query: 236 AESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE 295
A S VV++MGR CG++A+ A + + D IPE P + + + +
Sbjct: 185 ANSHSR-AFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPA---TSSEWQDQMCDIVSK 239
Query: 296 N-----GHMVIVIAEGAG 308
+ ++V+AEGA
Sbjct: 240 HRSRGKRTTIVVVAEGAI 257
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 153 bits (388), Expect = 2e-40
Identities = 53/252 (21%), Positives = 98/252 (38%), Gaps = 27/252 (10%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++ G G+N +R V GL G ++L + G+ G V
Sbjct: 405 VMNVGAPAAGMNAAVRSTVRIGLIQ--GN-RVLVVHDGFEGPAKGQIEEAGWSYVGGWTG 461
Query: 155 RGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVA 211
+GG+ LG+ R +I +I I + IIGG G + E +Q L +
Sbjct: 462 QGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIP 521
Query: 212 VAGIPKTIDNDIP-------AQRAINAAHVEA---------ESIENGIGVVKLMGRYCGF 255
IP T+ N++P A A+N + + +++ MG YCG+
Sbjct: 522 FVVIPATVSNNVPGSDFSVGADTALNTI-CTTCDRIKQSAAGTKRR-VFIIETMGGYCGY 579
Query: 256 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEGAGQDLLAE 314
+A A L + D I E PF + E + +++K +++ E ++ +
Sbjct: 580 LATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEKCNENYTTD 638
Query: 315 SLQSMNQQDASG 326
+ ++ ++ G
Sbjct: 639 FIFNLYSEEGKG 650
Score = 140 bits (355), Expect = 4e-36
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 47/254 (18%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFY--SKNTINLTPKVVNDI 152
++T GG G+N +R +V G++ G ++ + GY+G + T + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVVRVGIFT--GA-RVFFVHEGYQGLVDGGDHIREATWESVSMM 76
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI---- 203
+ GGT++G++R + ++ RGI + +IGGDG+ GA E
Sbjct: 77 LQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLL 136
Query: 204 -------------RQRGLKVAVAGIPKTIDNDIP--------------AQRAINAAHVEA 236
R + + G+ +IDND ++A A
Sbjct: 137 SDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTA 196
Query: 237 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 296
+S + V+++MGR+CG++A+ +L D IPE P E L + + +
Sbjct: 197 QSHQR-TFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSET-RTR 253
Query: 297 G--HMVIVIAEGAG 308
G +I++AEGA
Sbjct: 254 GSRLNIIIVAEGAI 267
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 151 bits (384), Expect = 9e-40
Identities = 49/256 (19%), Positives = 89/256 (34%), Gaps = 28/256 (10%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTI-NLTPKVVNDIH 153
I+ G LN R L G ++ I G+ G + L V D H
Sbjct: 603 IIHVGAPTSALNPATRVATLNSLAK--GH-RVFAIRNGFAGLIRHGAVRELNWIDVEDWH 659
Query: 154 KRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLKV 210
GG+ +GT+R D + Q + + IIGG + + +
Sbjct: 660 NTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNI 719
Query: 211 AVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFI 256
+ +P T+ N++P +A A + VV++ G Y G++
Sbjct: 720 PMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVVEVQGGYSGYL 779
Query: 257 AMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG-----HMVIVIAEGAGQDL 311
A YA L + PE+P L+ E + + +E+ + + E A +
Sbjct: 780 ASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHNEKASKVY 838
Query: 312 LAESLQSMNQQDASGN 327
+ + ++ + G
Sbjct: 839 TTDLIAAIIGEAGKGR 854
Score = 135 bits (341), Expect = 4e-34
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 52/257 (20%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNT--INLTPKVVNDI 152
I+T GG PG+N +R + G+++ G K+ GY G L + V +
Sbjct: 215 IITSGGDAPGMNAAVRAVTRAGIFY--GC-KVYACYEGYTGLVKGGDMLKELQWQDVRGL 271
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI---- 203
GGTI+GT+R + ++ GI+ + + GGDG+ GA + +E
Sbjct: 272 LSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELI 331
Query: 204 -------------RQRGLKVAVAGIPKTIDNDIP--------------AQRAINAAHVEA 236
+ + + G+ +IDND+ ++ A
Sbjct: 332 KELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDATA 391
Query: 237 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 296
S VV++MGR+CG++ + + + + D IPE P E + ++K +
Sbjct: 392 ASHSR-AFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPP---SESNWKDDLKKVCLRH 446
Query: 297 -----GHMVIVIAEGAG 308
+++AEGA
Sbjct: 447 REKGRRKTTVIVAEGAI 463
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 149 bits (379), Expect = 3e-39
Identities = 46/255 (18%), Positives = 87/255 (34%), Gaps = 28/255 (10%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIH 153
IV G LN R L H + K I G+ G + L+ V + H
Sbjct: 398 IVHVGAPSAALNAATRAATLYCLSHGH---KPYAIMNGFSGLIQTGEVKELSWIDVENWH 454
Query: 154 KRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLKV 210
GG+ +GT+R D I Q ++ + I+GG + + + + +
Sbjct: 455 NLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNI 514
Query: 211 AVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVVKLMGRYCGFI 256
+ IP T+ N++P + A + + V ++ G + G+I
Sbjct: 515 PMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQGGHSGYI 574
Query: 257 AMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG-----HMVIVIAEGAGQDL 311
A + L + PE L +++ + + ++V E A
Sbjct: 575 ASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNGKLLVRNEQASSVY 633
Query: 312 LAESLQSMNQQDASG 326
+ L + + + G
Sbjct: 634 STQLLADIISEASKG 648
Score = 134 bits (339), Expect = 6e-34
Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 52/257 (20%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNT--INLTPKVVNDI 152
++T GG PG+N +R +V G++ G + + GY G + + V
Sbjct: 10 VMTSGGDSPGMNAAVRAVVRTGIHF--GC-DVFAVYEGYEGLLRGGKYLKKMAWEDVRGW 66
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI---- 203
GGT++GT+R + ++ +GI+ + + GGDG+ GA + E
Sbjct: 67 LSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLV 126
Query: 204 -------------RQRGLKVAVAGIPKTIDNDIP--------------AQRAINAAHVEA 236
+++ G+ +IDND+ ++ A
Sbjct: 127 DELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATA 186
Query: 237 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 296
+S VV++MGR+CG++A+ A + + D IPE G + +++ + +
Sbjct: 187 KSHSR-AFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAV---PHGKWQDELKEVCQRH 241
Query: 297 -----GHMVIVIAEGAG 308
+ I++AEGA
Sbjct: 242 RSKGRRNNTIIVAEGAL 258
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 148 bits (376), Expect = 1e-38
Identities = 46/258 (17%), Positives = 95/258 (36%), Gaps = 33/258 (12%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTIN-LTPKVVNDIH 153
I+ G G+N+ + + + + I G+ G ++ + +
Sbjct: 576 IINVGAPAGGMNSAVYSMATYCMSRGH---VPYAIHNGFSGLARHESVRSINWLDIEGWG 632
Query: 154 KRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLK 209
GG+ +GT+R D I + G + + ++GG + I L+
Sbjct: 633 SLGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLR 692
Query: 210 VAVAGIPKTIDNDIP-------AQRAINAAHVEA---------ESIENGIGVVKLMGRYC 253
+ + IP TI N++P + +N+ +E + + VV++ G
Sbjct: 693 IPLVLIPATISNNVPGTEYSLGSDTCLNSF-MEYCDVIKQSAAATRNR-VFVVEVQGGNS 750
Query: 254 GFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-----GHMVIVIAEGAG 308
G+IA +A L +PE L +++ + +I+ +E A
Sbjct: 751 GYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILKSENAS 809
Query: 309 QDLLAESLQSMNQQDASG 326
+ L E + ++ +ASG
Sbjct: 810 KVLTTEVISTIIDDEASG 827
Score = 136 bits (344), Expect = 2e-34
Identities = 65/306 (21%), Positives = 108/306 (35%), Gaps = 62/306 (20%)
Query: 56 VDDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHAC---------IVTCGGLCPGL 106
+ + + + +K Y D+ ++T GG PG+
Sbjct: 137 LGSLIGFSGFKNPFAVNERSLLPKVSEEKAYRAEDDSEKLLNPVRKTIGVMTSGGDSPGM 196
Query: 107 NTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNT---INLTPKVVNDIHKRGGTILGT 162
N +R +V G+Y G K+ I GY G V GGT +GT
Sbjct: 197 NPFVRAVVRAGIYK--GC-KVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGT 253
Query: 163 SRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI-------------- 203
+R K ++ D GI+ + + GGDG+ GA E
Sbjct: 254 ARCKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQIS 313
Query: 204 ---RQRGLKVAVAGIPKTIDNDIP--------------AQRAINAAHVEAESIENGIGVV 246
+ + G +IDND+ RAI+ A S +V
Sbjct: 314 QQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATANSHSR-AFIV 372
Query: 247 KLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-----GHMVI 301
++MGR+CG++ + A L + D LIPE P + + + ++ ++
Sbjct: 373 EVMGRHCGWLGLLAGLAT-SADYILIPEKPA---SSREWQDQMCDIVGKHRARGKRKTIV 428
Query: 302 VIAEGA 307
++AEGA
Sbjct: 429 IVAEGA 434
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 5e-09
Identities = 50/289 (17%), Positives = 86/289 (29%), Gaps = 88/289 (30%)
Query: 109 VIREIV----CGLYHMYGVSKILGID-----------GGYRGFY-SKNTINLTPKVVNDI 152
+++ YG S IL I GG +G +N + + + D
Sbjct: 1641 AAQDVWNRADNHFKDTYGFS-ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD- 1698
Query: 153 HKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG--------TQKGAAV------ 198
G T KI I + + Y + TQ A+
Sbjct: 1699 ------------GKLKTEKIFKEINEHSTS--YTFRSEKGLLSATQFTQ--PALTLMEKA 1742
Query: 199 IYEEIRQRGLKV---AVAG-------IPKTIDNDIPAQRAINAAHVEAESIENGIGVVKL 248
+E+++ +GL AG A+ A+ + SIE+ + VV
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYA-------------AL-ASLADVMSIESLVEVVFY 1788
Query: 249 MGRYCGFIAMYATLGSRDVDCCLI-PESPFYLEGEGGLYEFIEKRLKENGHMV------- 300
G LG + I P + L +E+ K G +V
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 301 ----IVIA-EGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDH 344
V A + D + L + Q +L + + L +++ H
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL---EEVEGH 1894
Score = 42.3 bits (99), Expect = 4e-04
Identities = 72/417 (17%), Positives = 119/417 (28%), Gaps = 156/417 (37%)
Query: 28 DYIPDL----PTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS----PRGTHFRR- 78
DY +L TY +V +T+S+ I D+ +G +
Sbjct: 168 DYFEELRDLYQTYH---------VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 79 -AGPRQK---VYFVSDEVHAC-----------IVTC--GGLCPGLNTVIREIVCGL-YHM 120
P Y +S + +C +VT G PG +R + G H
Sbjct: 219 LENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPG---ELRSYLKGATGHS 274
Query: 121 YGV-------------------SKILG----IDGGYRGFYSKNTINLTPKVVNDIHKRG- 156
G+ K + I G R + + +L P ++ D +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 157 GT------ILGTSRGGHDTSKIVDSIQDRG----------IN--QVYIIGGDGTQKGAAV 198
G I ++ V+ +N + ++ G
Sbjct: 333 GVPSPMLSISNLTQE--QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP-----PQS 385
Query: 199 IYEEIRQRGLKVAVAGI--PKTID-NDIP-AQRA---------INAA-H----VEA-ESI 239
+Y GL + + P +D + IP ++R + + H V A + I
Sbjct: 386 LY------GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 240 ENGIGV--VKLMGRYCGFIAMYATLGSRD------------VDCCLIPESPFYLE----- 280
+ V + I +Y T D VDC I P E
Sbjct: 440 NKDLVKNNVSFNAKDIQ-IPVYDTFDGSDLRVLSGSISERIVDC--IIRLPVKWETTTQF 496
Query: 281 --------GEGGLYEFIEKRLKENGHMVIVIAEGAGQDL-LAESLQSMNQQDASGNK 328
G GG L G + +G G + +A +L N D G K
Sbjct: 497 KATHILDFGPGGA-----SGL---GVLTHRNKDGTGVRVIVAGTLDI-NPDDDYGFK 544
Score = 40.8 bits (95), Expect = 0.001
Identities = 73/471 (15%), Positives = 124/471 (26%), Gaps = 201/471 (42%)
Query: 37 PNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRG-----THFRRAGPRQKVYFVSDE 91
P F A S +++ F + ++ D P F + +VS
Sbjct: 23 PTASFFIA--SQLQEQFNKILPEPTEGFAAD-DEPTTPAELVGKF--------LGYVSSL 71
Query: 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVND 151
V G LN + E + L G ND
Sbjct: 72 VEP--SKVGQFDQVLNLCLTEFE---------NCYL------EG--------------ND 100
Query: 152 IHKRGGTILGTSRGG------------------------HDTSKIVDSIQDRGINQVYII 187
IH +L + S + ++ + G Q+ I
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAI 159
Query: 188 -GGDGTQKGAAVIY-EEIRQ---------RGLKVAVAGI---------------PKTID- 220
GG Q G Y EE+R L A + ++
Sbjct: 160 FGG---Q-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 221 -------NDIPAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIP 273
++ P + + + + S IGV++L Y V L+
Sbjct: 216 LEWLENPSNTPDKDYLLSIPI---SC-PLIGVIQL-AHYV-------------VTAKLLG 257
Query: 274 ESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLL-------AESLQSMNQQDASG 326
+P GE + LK G A G Q L+ +S +S
Sbjct: 258 FTP----GE------LRSYLK--G------ATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 327 NKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVH 386
+L +I R ++ Y ++P ++L S +
Sbjct: 300 ITVL----FFIG-------VRCYE----------AYPNTSLPP--------SILEDSLEN 330
Query: 387 G--------AVAGYTGFTVGP----VN-----GRHAYIPFNRINERQNQVV 420
+++ T V N G+ I + +N +N VV
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI--SLVNGAKNLVV 379
Score = 33.1 bits (75), Expect = 0.24
Identities = 48/297 (16%), Positives = 91/297 (30%), Gaps = 110/297 (37%)
Query: 222 DIPAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMY---ATLGSRDVDCCLIPESPFY 278
+P AA E + +L+G++ G+++ + +G D L
Sbjct: 40 ILPEPTEGFAADDEPTT------PAELVGKFLGYVSSLVEPSKVGQFDQ--VL------- 84
Query: 279 LEGEGGLYEFIEKRLKENG-HMVIV-------IAEGAGQDLL-----------------A 313
L EF L+ N H + ++L+ +
Sbjct: 85 ---NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 314 ES--LQSMNQQDAS--------GNKL-----LQDVGLWISHK------IKDHFARLHKMA 352
S +++ + +A GN L+D L+ ++ IK L ++
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD--LYQTYHVLVGDLIKFSAETLSELI 199
Query: 353 INLKYIDPTY-----MIRAI--PSNASDNVY-------CTL--LAQSAVHGAVAGYT-GF 395
+ + ++ + PSN D Y C L + Q H V GF
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGF 258
Query: 396 TVGPVNGR------HAYIPFNRINERQNQVVITDRMWARVLS-STNQPSFLSANELA 445
T G + H+ Q ++T A ++ + + SF + A
Sbjct: 259 TPGELRSYLKGATGHS------------QGLVT----AVAIAETDSWESFFVSVRKA 299
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 3e-05
Identities = 63/524 (12%), Positives = 144/524 (27%), Gaps = 162/524 (30%)
Query: 11 VVNGDAGYVLEDVPHLTDYIPDLPT-----YPNPLQFNAAYSVVKQYFVNVDDTV----- 60
V+ + +++ + P + T + L +N V +Y V+
Sbjct: 86 VLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRL-YNDN-QVFAKYNVSRLQPYLKLRQ 142
Query: 61 -------SQKIVVH---------------KDSPRGTHFRRAGPRQKVYFVSDEVHACIVT 98
++ +++ K+++++
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-----KIFWLN--------- 188
Query: 99 CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINL-------------- 144
C TV+ E++ L + + D ++I
Sbjct: 189 -LKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 145 --------TPKVVN--DIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGT-- 192
K N ++ + IL T+R + D + + + T
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCK---ILLTTR---FKQ-VTDFLSAATTTHISLDHHSMTLT 299
Query: 193 --------QKGAAVIYEEIRQRGLKV---AVAGIPKTIDNDIPAQRAINAAHVEAESIEN 241
K +++ + L ++ I ++I + + N HV + +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--ATWDNWKHVNCDKLTT 357
Query: 242 GIGVVKLMGRYCGFI---------AMYATLG--SRDVDCCLIPESPFYLEGEGGLYEFIE 290
I + M+ L IP L I
Sbjct: 358 IIES---------SLNVLEPAEYRKMFDRLSVFPPSAH---IPTI---------LLSLIW 396
Query: 291 KRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHK 350
+ ++ MV+V L SL + +Q + + L + K+++ +A LH+
Sbjct: 397 FDVIKSDVMVVV------NKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYA-LHR 447
Query: 351 MAINLKYIDP-TYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTG----FTVGPVNGRHA 405
++ Y P T+ + D + + + H + F R
Sbjct: 448 SIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGH---HLKNIEHPERMTLF-------RMV 496
Query: 406 YIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKR 449
++ F + + ++ W S N + +L +K
Sbjct: 497 FLDFRFL---EQKIRHDSTAWNASGSILN-----TLQQLKFYKP 532
Score = 40.6 bits (94), Expect = 0.001
Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 60/237 (25%)
Query: 144 LTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203
L+ + ++ I + GT R + ++ + V + + + I
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLR-------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 204 RQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLG 263
+ Q ++ E + ++ +Y
Sbjct: 99 KTE-----------------QRQPSMMTRMYI-EQRDRLYNDNQVFAKY----------- 129
Query: 264 SRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAG-QDLLAESLQSMNQQ 322
+ YL+ L E L+ +++I G+G + + S Q
Sbjct: 130 -------NVSRLQPYLKLRQALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 323 DASGNKLLQDVGLWISHKIKDHFARLHKMAINLKY-IDPTYMIRA-----IPSNASD 373
K+ W++ K + + +M L Y IDP + R+ I
Sbjct: 178 CKMDFKI-----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Score = 35.2 bits (80), Expect = 0.058
Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 92/246 (37%)
Query: 265 RDVDCCLIPESP-------------------------FYL---EGEGGLYEFIEKRLKEN 296
+ DC + + P F+ + E + +F+E+ L+ N
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 297 GHMVIVIAEGAGQDLLAESLQSMNQQDASG--------NKLLQDVGLWISHKI--KDHFA 346
L +++ +Q + ++L D ++ + + +
Sbjct: 91 ------------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 347 RLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHG---------AVAGYTGFTV 397
+L + + L+ P + NV + G A+ + V
Sbjct: 139 KLRQALLELR---P-----------AKNV--------LIDGVLGSGKTWVALDVCLSYKV 176
Query: 398 GPVNGRHAY-IPFNRINERQNQVVITDRMWARVLSSTNQPSFLSAN----------ELAK 446
+ + N + + + ++ ++ + S S+N EL +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 447 FKREKP 452
+ KP
Sbjct: 237 LLKSKP 242
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.79
Identities = 30/224 (13%), Positives = 55/224 (24%), Gaps = 48/224 (21%)
Query: 154 KRGGTILGTSRGGH---DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
K G I G D +GI + + + + R+R L
Sbjct: 1196 KMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVT 1255
Query: 211 AVAGI----PKTID-----------NDIPAQRAINAAHVEAESIENGIGVVKLMGRYCG- 254
A I ++ D + E+ + G
Sbjct: 1256 REAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYK 1315
Query: 255 ----FIAMYATLGSRDVDCCLIPESPFYLEGEG---GLYEFIE----KRL-----KENGH 298
+ L L + G + E + + G+
Sbjct: 1316 RDPRIAPLRGALA----TYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGN 1371
Query: 299 MVIVIAE---------GAGQDLLAESLQSMNQQDASGNKLLQDV 333
VI + + AG ++ +LQ +N GN+ +V
Sbjct: 1372 PVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNV 1415
Score = 27.9 bits (62), Expect = 8.2
Identities = 30/186 (16%), Positives = 50/186 (26%), Gaps = 59/186 (31%)
Query: 165 GGHDTSKIVDSI-QDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG---IPKTID 220
G D ++ + G G G + + + R V I
Sbjct: 1028 GITDPYEMYKYVHVSEVG--NCSGSGMG---GVSALRGMFKDRFKDEPVQNDILQESFI- 1081
Query: 221 NDIPAQ--------RAINAAHVEA-----ESIENGI-----GVVKLM--GRY-------- 252
N + A V A ES++ G+ G ++ G Y
Sbjct: 1082 NTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGS 1141
Query: 253 CGFIAMYATLGSRD-VDCCLIPES---PFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAG 308
F M AT + + + P P G F + A+GAG
Sbjct: 1142 FEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNG----F-------------MEAQGAG 1184
Query: 309 QDLLAE 314
++ +
Sbjct: 1185 IQIIMQ 1190
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 30.7 bits (70), Expect = 1.2
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 184 VYIIG-GDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQ--RA--INAAHV---- 234
VY++ GD ++ A ++ E +R GL V + +Q RA AA
Sbjct: 357 VYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416
Query: 235 EAESIENGIGVVKLM 249
E E + NG VK +
Sbjct: 417 EDE-VTNGTASVKPL 430
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 29.2 bits (65), Expect = 2.1
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 299 MVIVIA--EGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLK 356
+V++ + +G+D + E+LQS D L +S +K+ +A+ H +
Sbjct: 12 LVLLFSGKRKSGKDFVTEALQSRLGADVC-------AVLRLSGPLKEQYAQEHGLNFQRL 64
Query: 357 YIDPTY 362
TY
Sbjct: 65 LDTSTY 70
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen
III synthase, HMB, lyase; 2.50A {Pseudomonas syringae
PV}
Length = 269
Score = 28.5 bits (64), Expect = 4.0
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 289 IEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQ 322
+ + G ++ GA L +L+ Q
Sbjct: 231 VASLAQAAGARNVIDCRGASAAALLAALRDQPQP 264
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 28.1 bits (63), Expect = 7.0
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 146 PKVVNDIHKRGG--TILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGT 192
P + + K G + T + G T + + + GGDGT
Sbjct: 45 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGT 92
>1rwh_A Chondroitin AC lyase; chondroitinase, chondroitin lyase; HET: ASG
GCT GAD; 1.25A {Arthrobacter aurescens} SCOP: a.102.3.2
b.24.1.1 b.30.5.2 PDB: 1rwc_A* 1rwf_A* 1rwg_A* 1rwa_A*
1rw9_A
Length = 757
Score = 28.2 bits (62), Expect = 7.6
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 313 AESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAI 353
A+SL ++ A + D+ L ++ + RL ++A
Sbjct: 45 ADSLAKLDA-AAGRTSVFTDLSLAKDAEMVTTYTRLSQLAT 84
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 27.8 bits (62), Expect = 8.6
Identities = 29/207 (14%), Positives = 50/207 (24%), Gaps = 40/207 (19%)
Query: 74 THFRRAGPRQKV--YFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGV-----SKI 126
++ G R KV F++ E + G G + +V L+ + +
Sbjct: 169 YELKKRGIRYKVPMTFITSEPYL-----GHFGVGGIGASKRLVEDLFAERNIDWIANVAV 223
Query: 127 LGIDGGYRGFYSKN---------TINLTPKVV-NDIHKRGGTILGTSRGGHDTSKIVDSI 176
I+ + N P ++ G +
Sbjct: 224 KAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVN--RCF 281
Query: 177 QDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQRAINAAHVEA 236
Q+ ++ + G T I G+PKT A A
Sbjct: 282 QNPTYKNIFGV-GVVTA---------IPPIEKTPIPTGVPKT------GMMIEQMAMAVA 325
Query: 237 ESIENGIGVVKLMGRYCGFIAMYATLG 263
+I N I A G
Sbjct: 326 HNIVNDIRNNPDKYAPRLSAICIADFG 352
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 27.5 bits (62), Expect = 9.1
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 40/137 (29%)
Query: 148 VVNDIHKRG--GTILGTSR--------GGHDTSKI---------VDSIQDRGIN------ 182
++++ + G T+ G R G + I + ++++ GI
Sbjct: 270 MMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEEN 329
Query: 183 -QVYIIG-GDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPAQ--RA--INAAHV-- 234
++I+ GD + A + +R G+K + + I Q +A + A
Sbjct: 330 LDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIK----GQMKQADRLGAKFTIV 385
Query: 235 --EAESIENGIGVVKLM 249
+ E +EN VK M
Sbjct: 386 IGDQE-LENNKIDVKNM 401
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.415
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,197,507
Number of extensions: 458968
Number of successful extensions: 1286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 44
Length of query: 458
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 361
Effective length of database: 3,993,456
Effective search space: 1441637616
Effective search space used: 1441637616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)