BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012699
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 14 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 68
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 69 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 125
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 126 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 170
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 229
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 230 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 285 VISTACHPT 293
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 85/214 (39%), Gaps = 18/214 (8%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 159
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 217
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 218 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFS 352
++++ + H + S P E I S
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 14 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 68
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 69 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 125
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 126 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 170
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 229
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 230 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 285 VISTACHPT 293
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 85/214 (39%), Gaps = 18/214 (8%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 159
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 217
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 218 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFS 352
++++ + H + S P E I S
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 28 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 82
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 83 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 139
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 140 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 184
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 185 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 243
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 244 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 298
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 299 VISTACHPT 307
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 173
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 174 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 231
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 232 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 279
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 280 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 329
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 16 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 70
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 71 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 127
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 128 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 172
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 173 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 231
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 232 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 286
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 287 VISTACHPT 295
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 161
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 162 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 219
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 220 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 267
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 268 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 17 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 71
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 72 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 128
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 129 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 173
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 232
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 233 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 288 VISTACHPT 296
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 162
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 220
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 221 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 318
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 17 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 71
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 72 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 128
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 129 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 173
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 232
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 233 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 288 VISTACHPT 296
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 162
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 220
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 221 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 318
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 10 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 64
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 65 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 121
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 122 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 166
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 167 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 225
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 226 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 280
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 281 VISTACHPT 289
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 155
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 156 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 213
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 214 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 262 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 17 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 71
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 72 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 128
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 129 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 173
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 232
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 233 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 288 VISTACHPT 296
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 162
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 220
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 221 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 318
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 12 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 66
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 67 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 123
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 124 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 168
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 169 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 227
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 228 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 282
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 283 VISTACHPT 291
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 157
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 158 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 215
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 216 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 263
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 264 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 313
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 11 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 65
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 66 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 122
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 123 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 167
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 226
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 227 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 282 VISTACHPT 290
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 156
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 214
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 215 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 312
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 11 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 65
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 66 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 122
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 123 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 167
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 226
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 227 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 282 VISTACHPT 290
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 156
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 214
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 215 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 312
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 7 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 61
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 62 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 118
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 119 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 163
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 164 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 222
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 223 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 277
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 278 VISTACHPT 286
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 152
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 153 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 210
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 211 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 258
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 259 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 308
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 26/243 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 33 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 87
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 88 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 144
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 145 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 189
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 248
Query: 371 LWT 373
L T
Sbjct: 249 LKT 251
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 32/237 (13%)
Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS-----STPASRNATIYCGTE 193
F +T GH IS +SS N + SAS D T++IW S + N C
Sbjct: 79 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253
S L++ G+ D ++ W+V + LK P VS
Sbjct: 139 PQS--------NLIVSGSFDESVRIWDVKTGKC---------------LKTLPAHSDPVS 175
Query: 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313
A R GS + S +W+ + + + L + +D P ++ + F+ NGK + A+ +
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATL 234
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS---IFSLGSDGKIIEWSLQNQ 367
D + ++D S G + + H + I T I S D + W+LQ +
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 291
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 178
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 179 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 236
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 237 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 334
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 26/243 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +AS+S D ++IW YD + +
Sbjct: 35 PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 89
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 90 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 146
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 147 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 191
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 250
Query: 371 LWT 373
L T
Sbjct: 251 LKT 253
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 32/237 (13%)
Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS-----STPASRNATIYCGTE 193
F +T GH IS +SS N + SAS D T++IW S + N C
Sbjct: 81 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 140
Query: 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253
S L++ G+ D ++ W+V + LK P VS
Sbjct: 141 PQS--------NLIVSGSFDESVRIWDVKTGKC---------------LKTLPAHSDPVS 177
Query: 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313
A R GS + S +W+ + + + L + +D P ++ + F+ NGK + A+ +
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATL 236
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS---IFSLGSDGKIIEWSLQNQ 367
D + ++D S G + + H + I T I S D + W+LQ +
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 293
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 180
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 181 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 238
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 239 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 286
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 287 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 336
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
P + F T GHT +S +FS +G +A++S D ++IW YD + +
Sbjct: 14 PNYALKF--TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH---K 68
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
I + W S+ LL+ + D +K W+V + + + L + V +P +
Sbjct: 69 LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 125
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
VS + S+ +W++KT K + LP DP ++++ FN +G ++ +S
Sbjct: 126 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 170
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
+ DG+ ++D ++G + D+ +S + F P+ I + D + W ++G+
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 229
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
L T + ++ K C G+ ++ S I+ ++ + H
Sbjct: 230 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 431 ITTVDWHPT 439
+ + HPT
Sbjct: 285 VISTACHPT 293
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVH 159
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 217
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D +++
Sbjct: 218 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 315
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 129/303 (42%), Gaps = 29/303 (9%)
Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCGTEIMSL 197
+ T GHT +S +FS +G +AS+S D ++IW YD + + I +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---KLGISDV 74
Query: 198 EWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS 257
W S+ LL+ + D +K W+V + + + L + V +P + VS +
Sbjct: 75 AWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGSFD 131
Query: 258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317
S+ +W++KT + LP DP ++++ FN +G ++ +S+ DG+
Sbjct: 132 E-------------SVRIWDVKTGMCLKTLPAHSDP--VSAVHFNRDGSLIVSSSYDGLC 176
Query: 318 HMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376
++D ++G + D+ +S + F P+ I + D + W ++G+ L T
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY-SKGKCLKT--- 232
Query: 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDW 436
+ ++ K C G+ ++ S I+ ++ + H + +
Sbjct: 233 --YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 437 HPT 439
HPT
Sbjct: 291 HPT 293
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 93/239 (38%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK---TLPAHSDPVSAVH 159
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 217
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
L +W+ K + ++ F+ GK + + + D M++
Sbjct: 218 ------------DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 315
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 129/303 (42%), Gaps = 29/303 (9%)
Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCGTEIMSL 197
+ T GHT +S +FS +G +AS+S D ++IW YD + + I +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---KLGISDV 74
Query: 198 EWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS 257
W S+ LL+ + D +K W+V + + + L + V +P + VS +
Sbjct: 75 AWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGSFD 131
Query: 258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317
S+ +W++KT + LP DP ++++ FN +G ++ +S+ DG+
Sbjct: 132 E-------------SVRIWDVKTGMCLKTLPAHSDP--VSAVHFNRDGSLIVSSSYDGLC 176
Query: 318 HMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376
++D ++G + D+ +S + F P+ I + D + W ++G+ L T
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKT--- 232
Query: 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDW 436
+ ++ K C G+ ++ S I+ ++ + H + +
Sbjct: 233 --YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 437 HPT 439
HPT
Sbjct: 291 HPT 293
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L+T GH++ + CC F+ N I S S D +VRIW + T+ ++ +S
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK---TLPAHSDPVSAVH 159
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ L++ + DG + W+ + + + L D P V +K SP ++A
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDN- 217
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HNGKILAASAVDGMIH 318
+L +W+ K + ++ F+ GK + + + D M++
Sbjct: 218 ------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNC 376
++++ + H + S P E I S +L+N + LW +C
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA---------ALENDKTIKLWKSDC 315
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 41/255 (16%)
Query: 119 YTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
++ +G+ D VK+ L+T GH+S + FS G IASAS D TV++
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Query: 174 WTYDSSTPASRNATIYCG-TEIMSLEWECK---SDRLLLIGTADGGIKAWNVDAKRVVCD 229
W +RN + T S W D+ + + D +K WN + + +
Sbjct: 412 W--------NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT- 462
Query: 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL 289
T SV + SP SA+ + ++ +WN + L
Sbjct: 463 --LTGHSSSVRGVAFSPDGQTIASASDDK-------------TVKLWNR---NGQLLQTL 504
Query: 290 GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDE 347
++ + F+ +G+ +A+++ D + +++ + L +TG H S++ + F PD
Sbjct: 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVWGVAFSPDG 561
Query: 348 TSIFSLGSDGKIIEW 362
+I S SD + W
Sbjct: 562 QTIASASSDKTVKLW 576
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/348 (21%), Positives = 139/348 (39%), Gaps = 54/348 (15%)
Query: 119 YTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
++ +G+ D VK+ L+T GH+S + FS G IASAS D TV++
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 124
Query: 174 WTYDSSTPASRNATIYCG-TEIMSLEWECK---SDRLLLIGTADGGIKAWNVDAKRVVCD 229
W +RN + T S W + + + D +K WN + + +
Sbjct: 125 W--------NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT- 175
Query: 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL 289
T SV + SP SA+ + ++ +WN + L
Sbjct: 176 --LTGHSSSVWGVAFSPDGQTIASASDDK-------------TVKLWNR---NGQLLQTL 217
Query: 290 GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDE 347
++ + F+ +G+ +A+++ D + +++ + L +TG H S+++ + F PD
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVNGVAFRPDG 274
Query: 348 TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS 407
+I S SD K ++ LW RN S +A +G+ + S
Sbjct: 275 QTIAS-ASDDKTVK---------LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 408 VRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADHSVQV 454
++ G ++TL H +++ V + P + S D +V++
Sbjct: 325 KTVKLWNRNGQH--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 140/353 (39%), Gaps = 64/353 (18%)
Query: 119 YTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
++ +G+ D VK+ L+T GH+S + FS G IASAS D TV++
Sbjct: 24 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 83
Query: 174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDR---------LLLIGTADGGIKAWNVDAK 224
W +RN G + +L S R + + D +K WN + +
Sbjct: 84 W--------NRN-----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 130
Query: 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM 284
+ T SV + SP SA+ + ++ +WN
Sbjct: 131 LLQT---LTGHSSSVWGVAFSPDGQTIASASDDK-------------TVKLWNR---NGQ 171
Query: 285 TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAHDSAISSIL 342
+ L ++ + F+ +G+ +A+++ D + +++ + L +TG H S++ +
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVRGVA 228
Query: 343 FGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL 402
F PD +I S SD K ++ LW RN S + +A +G+ +
Sbjct: 229 FSPDGQTIAS-ASDDKTVK---------LWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIA 278
Query: 403 VTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADHSVQV 454
S ++ G ++TL H +++ V + P + S D +V++
Sbjct: 279 SASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 59/328 (17%)
Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLE 198
L+T GH+S + FS G IASAS D TV++W +RN G + +L
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--------NRN-----GQHLQTLT 341
Query: 199 WECKS---------DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP 249
S + + + D +K WN + + + T SV + SP
Sbjct: 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVRGVAFSPDGQ 398
Query: 250 IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA 309
SA+ + ++ +WN + L ++ + F+ + + +A
Sbjct: 399 TIASASDDK-------------TVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDDQTIA 442
Query: 310 ASAVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ 367
+++ D + +++ + L +TG H S++ + F PD +I S SD K ++
Sbjct: 443 SASDDKTVKLWNRNGQLLQTLTG---HSSSVRGVAFSPDGQTIAS-ASDDKTVK------ 492
Query: 368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP- 426
LW RN S +A +G+ + S ++ G ++TL
Sbjct: 493 ---LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTG 547
Query: 427 HGAAITTVDWHPTLPMFLTGSADHSVQV 454
H +++ V + P + S+D +V++
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVKL 575
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 125/316 (39%), Gaps = 49/316 (15%)
Query: 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECK-- 202
H+S + FS G IASAS D TV++W +RN + T S W
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLW--------NRNGQLLQTLTGHSSSVWGVAFS 66
Query: 203 -SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYG 261
+ + + D +K WN + + + T SV + SP SA+ +
Sbjct: 67 PDGQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVRGVAFSPDGQTIASASDDK--- 120
Query: 262 SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFD 321
++ +WN + L ++ + F+ +G+ +A+++ D + +++
Sbjct: 121 ----------TVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 322 MSAGL--QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379
+ L +TG H S++ + F PD +I S SD K ++ LW RN
Sbjct: 168 RNGQLLQTLTG---HSSSVWGVAFSPDGQTIAS-ASDDKTVK---------LWNRNGQLL 214
Query: 380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHP 438
S +A +G+ + S ++ G ++TL H +++ V + P
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVNGVAFRP 272
Query: 439 TLPMFLTGSADHSVQV 454
+ S D +V++
Sbjct: 273 DGQTIASASDDKTVKL 288
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 104/262 (39%), Gaps = 27/262 (10%)
Query: 114 FNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
F D Y G D + + + FL GH + +++ G + S S D TVR+
Sbjct: 130 FEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRV 187
Query: 174 WTYD----SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229
W + N+T+ C + E K+ + ++ G+ D + W + + V D
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRCLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
Query: 230 LNTTDAFPSVLDLKCSPVE-PIFVS------AAASRRYGSSNIYSWGFA--SLTVWNMKT 280
+P V +P E P FV A+ G NI G +L VW++
Sbjct: 243 HGEEHDYPLVFH---TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 299
Query: 281 WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISS 340
K + +L D I S ++H K ++++D I ++D+ G + H + +
Sbjct: 300 MKCLYILSGHTD--RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG- 356
Query: 341 ILFGPDETSIFSLGSDGKIIEW 362
L + + S +DG I W
Sbjct: 357 -LLRLSDKFLVSAAADGSIRGW 377
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD 204
GHT I + SAS+D T+RIW ++ T+ T ++ L SD
Sbjct: 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM---YTLQGHTALVGL--LRLSD 362
Query: 205 RLLLIGTADGGIKAWNVD 222
+ L+ ADG I+ W+ +
Sbjct: 363 KFLVSAAADGSIRGWDAN 380
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 27/262 (10%)
Query: 114 FNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
F D Y G D + + + FL GH + +++ G + S S D TVR+
Sbjct: 130 FEDN-YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRV 187
Query: 174 WTYD----SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229
W + N+T+ C +I+ E K+ + ++ G+ D + W + + V D
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRC-LDIV----EYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
Query: 230 LNTTDAFPSVLDLKCSPVE-PIFV------SAAASRRYGSSNIYSWGFA--SLTVWNMKT 280
+P V +P E P FV A+ G NI G +L VW++
Sbjct: 243 HGEEHDYPLVFH---TPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 299
Query: 281 WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISS 340
K + +L D I S ++H K +++ D I ++D+ G H + +
Sbjct: 300 XKCLYILSGHTD--RIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVG- 356
Query: 341 ILFGPDETSIFSLGSDGKIIEW 362
L + + S +DG I W
Sbjct: 357 -LLRLSDKFLVSAAADGSIRGW 377
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD 204
GHT I + SAS D T+RIW ++ T+ T ++ L SD
Sbjct: 308 GHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN---GELXYTLQGHTALVGL--LRLSD 362
Query: 205 RLLLIGTADGGIKAWNVD 222
+ L+ ADG I+ W+ +
Sbjct: 363 KFLVSAAADGSIRGWDAN 380
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
L +GH + + C ++ G + S + D V++W D T + + SL++
Sbjct: 232 LHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVW--DPETETCLHTLQGHTNRVYSLQF 287
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ ++ G+ D I+ W+V+ + L + S ++LK + I VS A
Sbjct: 288 DGIH---VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK----DNILVSGNAD-- 338
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLP-LGEDPPAITSLCFNHNGKILAASAVDGMIH 318
+++ +W++KT + + L + A+T L FN N + S+ DG +
Sbjct: 339 -----------STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVK 385
Query: 319 MFDMSAG 325
++D+ G
Sbjct: 386 LWDLKTG 392
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 91/217 (41%), Gaps = 32/217 (14%)
Query: 150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLL 208
I+C +F GN I S S D T+++W+ + R + G W + D +++
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSA-VTGKCLRTLVGHTGG-----VWSSQMRDNIII 173
Query: 209 IGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSW 268
G+ D +K WN + + L + ++C + V + GS +
Sbjct: 174 SGSTDRTLKVWNAETGECIHTL-----YGHTSTVRCMHLHEKRVVS------GSRD---- 218
Query: 269 GFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI 328
A+L VW+++T + + VL +G C ++G+ + + A D M+ ++D +
Sbjct: 219 --ATLRVWDIETGQCLHVL-MGHVAAV---RCVQYDGRRVVSGAYDFMVKVWDPETETCL 272
Query: 329 TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365
H + + S+ F D + S D I W ++
Sbjct: 273 HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE 307
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS 355
I S+ ++ +GK LA+ A+DG+I++FD++ G + H I S+ F PD + +
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 356 DGKIIEWSLQN-------QGQVLWTRNCSRFC 380
DG I + +Q+ G W N + FC
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVA-FC 257
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 22/214 (10%)
Query: 136 KVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-TEI 194
++D + GH + S + AS+S+D +R+W ++ + +I G +
Sbjct: 69 RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN---GKQIKSIDAGPVDA 125
Query: 195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA 254
+L + S + L GT G + + V++ + L+T F +L + SP S
Sbjct: 126 WTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKF--ILSIAYSPDGKYLASG 182
Query: 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD 314
A G NI+ ++ T K + L G P I SL F+ + ++L ++ D
Sbjct: 183 AID---GIINIF----------DIATGKLLHTLE-GHAMP-IRSLTFSPDSQLLVTASDD 227
Query: 315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDET 348
G I ++D+ H S + ++ F PD+T
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 261
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD-------- 346
+ S+ +H I A+S++D I ++D+ G QI A ++ F PD
Sbjct: 82 GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT 141
Query: 347 ---ETSIFSLGSDGKIIEWSLQNQGQVL 371
+ +IF + S K E+SL +G+ +
Sbjct: 142 HVGKVNIFGVESGKK--EYSLDTRGKFI 167
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 65/267 (24%)
Query: 134 EVKVDFLETFLGHTSPISCCRFSSSGNNIASAS---------VDGTVRIWTYDSS----- 179
E+ V+ L L HTS + C +FS+ G +A+ DG++ D S
Sbjct: 52 EIDVE-LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 110
Query: 180 -----TPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC------ 228
T +S ++ +Y + S + + L G D I+ W+++ +++V
Sbjct: 111 PENLNTSSSPSSDLYIRSVCFSPD-----GKFLATGAEDRLIRIWDIENRKIVMILQGHE 165
Query: 229 -DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL 287
D+ + D FPS L VS + R ++ +W+++T + L
Sbjct: 166 QDIYSLDYFPSGDKL---------VSGSGDR-------------TVRIWDLRTGQCSLTL 203
Query: 288 PLGEDPPAITSLCFN-HNGKILAASAVDGMIHMFDMSAGLQITGWPA-------HDSAIS 339
+ ED +T++ + +GK +AA ++D + ++D G + + H ++
Sbjct: 204 SI-ED--GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260
Query: 340 SILFGPDETSIFSLGSDGKIIEWSLQN 366
S++F D S+ S D + W+LQN
Sbjct: 261 SVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY-------DSSTPASRNATI-YCGT 192
E+ GH + F+ G ++ S S+D +V++W DS TP S + Y G
Sbjct: 250 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309
Query: 193 EIMSLEWE-CKSDRLLLIGTADGGIKAWN 220
+ L ++D +L G+ D G+ W+
Sbjct: 310 KDFVLSVATTQNDEYILSGSKDRGVLFWD 338
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 32/223 (14%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD 204
H + CC FSS + IA+ S D V+IW DS+T + ++ + KS+
Sbjct: 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIW--DSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 205 RLLL-IGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSS 263
LLL G+ D +K W+++ K C SV + SP + + S +A
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKE--CRNTMFGHTNSVNHCRFSPDDELLASCSAD------ 764
Query: 264 NIYSWGFASLTVWNMKT---WKAMTVLPL---GEDPP----AITSLC-FNHNGKILAASA 312
+L +W++++ K++ V EDPP I C ++ +G + +A
Sbjct: 765 -------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817
Query: 313 VDGMIHMFDM-SAGLQITGWPAHDSAISSILFGP-DETSIFSL 353
+ ++ +FD+ ++GL H S I F P D ++ +L
Sbjct: 818 KNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 277 NMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS 336
N KT K ++ L + A+ CF+ +G+ +A+ D + +F G ++ AH+
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED 658
Query: 337 AISSILFGPDETSIFSLGSDGKIIEW 362
+ F D++ I + +D K+ W
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIW 684
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%)
Query: 139 FLETFLGHTSPISCCRFSSSGNN--IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS 196
+ T+ H+ ++CC F++ N+ +A+ S D +++W D + RN T++ T ++
Sbjct: 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW--DLNQKECRN-TMFGHTNSVN 747
Query: 197 LEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
D LL +ADG ++ W+V + +N F S D P + +
Sbjct: 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED---PPEDVEVIVKCC 804
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316
S I + ++++ T + + G I F+ + +
Sbjct: 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYC 863
Query: 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
+ ++++ + L++ H S + ++F PD +S + D I W
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 37/223 (16%)
Query: 144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS 203
+GH + +F++ G + S+S D +++W + + A + L+
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ----- 1054
Query: 204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSS 263
D LL + DG +K WNV R+ D +VL S F S +A + ++
Sbjct: 1055 DSRLLSWSFDGTVKVWNVITGRIERDFTCHQG--TVLSCAISSDATKFSSTSADK---TA 1109
Query: 264 NIYSWGFASLTVWNMKTWKAMTVLPLGE---DPPAITSLCFNHNGKILAASAVDGMIHMF 320
I+S+ S PL E + F+ +G +LA +G I ++
Sbjct: 1110 KIWSFDLLS---------------PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Query: 321 DMSAGLQI---------TGWPAHDSAISSILFGPDETSIFSLG 354
++S G + G H ++ + F PD ++ S G
Sbjct: 1155 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEI 194
GH S + FS G++ +AS D T+R+W + +N+ I EI
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW---ETKKVCKNSAIVLKQEI 926
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174
L GH + C FS G +A+ +G +RIW
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 14/218 (6%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI--YCGTEIMSLEWECK 202
GH P++ +++ G+ + S S D + +W S R T+ + GT I S++ +C
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWY---SLNGERLGTLDGHTGT-IWSIDVDCF 85
Query: 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS--RRY 260
+ + + G+AD IK W+V + V T + V ++ SP F++ + +
Sbjct: 86 T-KYCVTGSADYSIKLWDVSNGQCVA---TWKSPVPVKRVEFSPCGNYFLAILDNVMKNP 141
Query: 261 GSSNIYSWGFASLTVWNMK-TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
GS NIY S T K + + + + E A T ++ GK + A DG I
Sbjct: 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201
Query: 320 FDMSAGLQ-ITGWPAHDSAISSILFGPDETSIFSLGSD 356
+D+S + + H+ +IS + F PD T + D
Sbjct: 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 32/223 (14%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD 204
H + CC FSS + IA+ S D V+IW DS+T + ++ + KS+
Sbjct: 662 AHEDEVLCCAFSSDDSYIATCSADKKVKIW--DSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 205 RLLL-IGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSS 263
LLL G+ D +K W+++ K C SV + SP + + S +A
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKE--CRNTMFGHTNSVNHCRFSPDDELLASCSAD------ 771
Query: 264 NIYSWGFASLTVWNMKT---WKAMTVLPL---GEDPP----AITSLC-FNHNGKILAASA 312
+L +W++++ K++ V EDPP I C ++ +G + +A
Sbjct: 772 -------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 824
Query: 313 VDGMIHMFDM-SAGLQITGWPAHDSAISSILFGP-DETSIFSL 353
+ ++ +FD+ ++GL H S I F P D ++ +L
Sbjct: 825 KNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 277 NMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS 336
N KT K ++ L + A+ CF+ +G+ +A+ D + +F G ++ AH+
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED 665
Query: 337 AISSILFGPDETSIFSLGSDGKIIEW 362
+ F D++ I + +D K+ W
Sbjct: 666 EVLCCAFSSDDSYIATCSADKKVKIW 691
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%)
Query: 139 FLETFLGHTSPISCCRFSSSGNN--IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS 196
+ T+ H+ ++CC F++ N+ +A+ S D +++W D + RN T++ T ++
Sbjct: 698 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW--DLNQKECRN-TMFGHTNSVN 754
Query: 197 LEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
D LL +ADG ++ W+V + +N F S D P + +
Sbjct: 755 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED---PPEDVEVIVKCC 811
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316
S I + ++++ T + + G I F+ + +
Sbjct: 812 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYC 870
Query: 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
+ ++++ + L++ H S + ++F PD +S + D I W
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 37/223 (16%)
Query: 144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS 203
+GH + +F++ G + S+S D +++W + + A + L+
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ----- 1061
Query: 204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSS 263
D LL + DG +K WNV R+ D +VL S F S +A + ++
Sbjct: 1062 DSRLLSWSFDGTVKVWNVITGRIERDFTCHQG--TVLSCAISSDATKFSSTSADK---TA 1116
Query: 264 NIYSWGFASLTVWNMKTWKAMTVLPLGE---DPPAITSLCFNHNGKILAASAVDGMIHMF 320
I+S+ S PL E + F+ +G +LA +G I ++
Sbjct: 1117 KIWSFDLLS---------------PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Query: 321 DMSAGLQI---------TGWPAHDSAISSILFGPDETSIFSLG 354
++S G + G H ++ + F PD ++ S G
Sbjct: 1162 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1204
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEI 194
GH S + FS G++ +AS D T+R+W + +N+ I EI
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW---ETKKVCKNSAIVLKQEI 933
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174
L GH + C FS G +A+ +G +RIW
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
+ +F GH+ + C ++ G SAS D T+R+W D +T + + +++MS++
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVMSVDI 109
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ K+ +++ G+ D IK W + + + L D V + P E +
Sbjct: 110 DKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 165
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
G+ + + WN+ ++ +G + I +L + +G ++A++ DG I +
Sbjct: 166 AGNDKM-------VKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIML 216
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
++++A + A D + S+ F P+
Sbjct: 217 WNLAAKKAMYTLSAQDE-VFSLAFSPNR 243
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA--TIYCGTEIMSLEWE 200
F+GH S I+ S G IASA DG + +W A++ A T+ E+ SL +
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-----AAKKAMYTLSAQDEVFSLAFS 240
Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230
+R L GIK +++D + +V DL
Sbjct: 241 --PNRYWLAAATATGIKVFSLDPQYLVDDL 268
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364
D M+ ++++ + H+S I+++ PD T I S G DG+I+ W+L
Sbjct: 169 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
+ +F GH+ + C ++ G SAS D T+R+W D +T + + +++MS++
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVMSVDI 115
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ K+ +++ G+ D IK W + + + L D V + P E +
Sbjct: 116 DKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 171
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
G+ + + WN+ ++ +G + I +L + +G ++A++ DG I +
Sbjct: 172 AGNDKM-------VKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIML 222
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
++++A + A D + S+ F P+
Sbjct: 223 WNLAAKKAMYTLSAQDE-VFSLAFSPNR 249
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA--TIYCGTEIMSLEWE 200
F+GH S I+ S G IASA DG + +W A++ A T+ E+ SL +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-----AAKKAMYTLSAQDEVFSLAFS 246
Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230
+R L GIK +++D + +V DL
Sbjct: 247 --PNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364
D M+ ++++ + H+S I+++ PD T I S G DG+I+ W+L
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
+ +F GH+ + C ++ G SAS D T+R+W D +T + + +++MS++
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVMSVDI 115
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ K+ +++ G+ D IK W + + + L D V + P E +
Sbjct: 116 DKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 171
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
G+ + + WN+ ++ +G + I +L + +G ++A++ DG I +
Sbjct: 172 AGNDKM-------VKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIML 222
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
++++A + A D + S+ F P+
Sbjct: 223 WNLAAKKAMYTLSAQDE-VFSLAFSPNR 249
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA--TIYCGTEIMSLEWE 200
F+GH S I+ S G IASA DG + +W A++ A T+ E+ SL +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-----AAKKAMYTLSAQDEVFSLAFS 246
Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230
+R L GIK +++D + +V DL
Sbjct: 247 --PNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364
D M+ ++++ + H+S I+++ PD T I S G DG+I+ W+L
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
+ +F GH+ + C ++ G SAS D T+R+W D +T + + +++MS++
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVMSVDI 115
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ K+ +++ G+ D IK W + + + L D V + P E +
Sbjct: 116 DKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 171
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
G+ + + WN+ ++ +G + I +L + +G ++A++ DG I +
Sbjct: 172 AGNDKM-------VKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIML 222
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
++++A + A D + S+ F P+
Sbjct: 223 WNLAAKKAMYTLSAQDE-VFSLAFSPNR 249
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA--TIYCGTEIMSLEWE 200
F+GH S I+ S G IASA DG + +W A++ A T+ E+ SL +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-----AAKKAMYTLSAQDEVFSLAFS 246
Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230
+R L GIK +++D + +V DL
Sbjct: 247 --PNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364
D M+ ++++ + H+S I+++ PD T I S G DG+I+ W+L
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
+ +F GH+ + C ++ G SAS D T+R+W D +T + + +++MS++
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVMSVDI 115
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ K+ +++ G+ D IK W + + + L D V + P E +
Sbjct: 116 DKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 171
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
G+ + + WN+ ++ +G + I +L + +G ++A++ DG I +
Sbjct: 172 AGNDKM-------VKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIML 222
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
++++A + A D + S+ F P+
Sbjct: 223 WNLAAKKAMYTLSAQDE-VFSLAFSPNR 249
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA--TIYCGTEIMSLEWE 200
F+GH S I+ S G IASA DG + +W A++ A T+ E+ SL +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-----AAKKAMYTLSAQDEVFSLAFS 246
Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230
+R L GIK +++D + +V DL
Sbjct: 247 --PNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364
D M+ ++++ + H+S I+++ PD T I S G DG+I+ W+L
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG 330
A++ VW+ +T L D ++ + F+H+GK+LA+ + D I ++D I
Sbjct: 130 ATIKVWDYETGDFERTLKGHTD--SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 187
Query: 331 WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365
HD +SS+ P+ I S D I W +Q
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 123/327 (37%), Gaps = 43/327 (13%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD 204
GH SP++ F + + SAS D T+++W Y++ + +S + S
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD---HSG 162
Query: 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSN 264
+LL +AD IK W+ + ++ D +V + P VSA+ +
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDH--NVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA 324
+ + G+ T + W M V P +D I S + ++ + + + +
Sbjct: 221 VQT-GYCVKTFTGHREWVRM-VRP-NQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 325 GLQITGWPAHDSAISSI---------LFGPDETSIFSLGSDGKIIEWSLQN-------QG 368
++ W A +S+ SSI G + S D I W + G
Sbjct: 278 VVECISW-APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 336
Query: 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PH 427
W R + G+ +L + ++ + + M+TL H
Sbjct: 337 HDNWVRG----------------VLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLNAH 379
Query: 428 GAAITTVDWHPTLPMFLTGSADHSVQV 454
+T++D+H T P +TGS D +V+V
Sbjct: 380 EHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176
DF T GHT + F SG +AS S D T+++W +
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 77/215 (35%), Gaps = 53/215 (24%)
Query: 134 EVKVDF-LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGT 192
EV+ + ++TF GH + R + G IAS S D TVR+W AT C
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---------ATKECKA 270
Query: 193 EIMS-------LEWECKSDR-------------------LLLIGTADGGIKAWNVDAKRV 226
E+ + W +S LL G+ D IK W+V
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330
Query: 227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV 286
+ L D + V + +S A + +L VW+ K + M
Sbjct: 331 LMTLVGHDNW--VRGVLFHSGGKFILSCADDK-------------TLRVWDYKNKRCMKT 375
Query: 287 LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFD 321
L E +TSL F+ + +VD + +++
Sbjct: 376 LNAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 141 ETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTE--IMSL 197
+TF GH + C F+ + AS +D TV++W+ STP N T+ G E + +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYV 190
Query: 198 EWECKSDRLLLIGTADG-GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
++ D+ +I +D IK W+ K V L +V P PI +S +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSE 248
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG 290
+L +WN T+K L +G
Sbjct: 249 D-------------GTLKIWNSSTYKVEKTLNVG 269
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 21/248 (8%)
Query: 137 VDFLETFLGHTSPISCCRFSSSGNNI-ASASVDGTVRIWTYDSSTPASRNAT-------I 188
++ + F H+S + +F++ +N+ AS +G + IW + T + N T +
Sbjct: 103 INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM 162
Query: 189 YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE 248
E++SL W + + W++ AK+ V L+ T S + + S VE
Sbjct: 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP-NSGIKQQLSVVE 221
Query: 249 --PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGEDPPAITSLCFNHNG 305
P + A+ GS N S+ +W+++ + L G I SL + H
Sbjct: 222 WHPKNSTRVATAT-GSDND-----PSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQD 274
Query: 306 K-ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWS 363
+ +L +S D + +++ + Q++ +PA + F P+ +F+ S D KI +
Sbjct: 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334
Query: 364 LQNQGQVL 371
LQN L
Sbjct: 335 LQNLTNTL 342
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 141 ETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTE--IMSL 197
+TF GH + C F+ + AS +D TV++W+ STP N T+ G E + +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYV 190
Query: 198 EWECKSDRLLLIGTADG-GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
++ D+ +I +D IK W+ K V L +V P PI +S +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSE 248
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG 290
+L +WN T+K L +G
Sbjct: 249 D-------------GTLKIWNSSTYKVEKTLNVG 269
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 141 ETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTE--IMSL 197
+TF GH + C F+ + AS +D TV++W+ STP N T+ G E + +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYV 190
Query: 198 EWECKSDRLLLIGTADG-GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
++ D+ +I +D IK W+ K V L +V P PI +S +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSE 248
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG 290
+L +WN T+K L +G
Sbjct: 249 D-------------GTLKIWNSSTYKVEKTLNVG 269
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 141 ETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTE--IMSL 197
+TF GH + C F+ + AS +D TV++W+ STP N T+ G E + +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYV 190
Query: 198 EWECKSDRLLLIGTADG-GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
++ D+ +I +D IK W+ K V L +V P PI +S +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSE 248
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG 290
+L +WN T+K L +G
Sbjct: 249 D-------------GTLKIWNSSTYKVEKTLNVG 269
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 103/243 (42%), Gaps = 32/243 (13%)
Query: 153 CRFSSSGNNIASASVDGTVRIW--TYDSS-TPASRNATIYCGTEIMSLEWECKSDRLLLI 209
C ++ SG IA +D ++ T+D + A++ ++ T +S SD +L
Sbjct: 112 CAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT 171
Query: 210 GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR---------- 259
+ DG W+V++ +++ + A LDL S FVS ++
Sbjct: 172 ASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231
Query: 260 -----------------YGSSNIYSWGF--ASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300
Y S + ++ G A+ +++++ + + + +S+
Sbjct: 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291
Query: 301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKII 360
F+ +G++L A D I+++D+ G +++ H++ +S++ PD T+ S D +
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 361 EWS 363
W+
Sbjct: 352 VWA 354
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIM---- 195
++ F H S ++ R+ SG+ AS S D T R+ YD A R IY I+
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRL--YD--LRADREVAIYSKESIIFGAS 288
Query: 196 SLEWECKSDRLLLIGTADGGIKAWNV 221
S+++ S RLL G D I W+V
Sbjct: 289 SVDFSL-SGRLLFAGYNDYTINVWDV 313
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/314 (17%), Positives = 110/314 (35%), Gaps = 19/314 (6%)
Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE 200
T GH + + C + I S+S DG V +W DS T +A T +M+ +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVW--DSFTTNKEHAVTMPCTWVMACAY- 114
Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY 260
+ I +D K V L K + ++SA +
Sbjct: 115 ---------APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165
Query: 261 GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320
+ + G + +W++++ + + L + G + D ++
Sbjct: 166 DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 321 DMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380
DM +G + + H+S ++S+ + P + S D + L+ +V
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-------IY 278
Query: 381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTL 440
ES + ++GR L ++ V + H ++T+ P
Sbjct: 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG 338
Query: 441 PMFLTGSADHSVQV 454
F +GS DH+++V
Sbjct: 339 TAFCSGSWDHTLRV 352
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC 201
T GHT+ ++ CRFS +AS S DGT+++W +T A+ +I ++LE +
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW---DATSANERKSINVKQFFLNLE-DP 799
Query: 202 KSDRLLLIGTADGGIKAWNVDAKRVV 227
+ D +++ +W+ D R++
Sbjct: 800 QEDMEVIVKCC-----SWSADGARIM 820
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 236 FPSVLDL-KCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293
FP+++ L C P ++ A + N G L N K ++ L +
Sbjct: 566 FPNIVQLGLCEPETSEVYQQAKLQAKQEVDN----GMLYLEWINKKNITNLSRLVVRPHT 621
Query: 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL 353
A+ CF+ +G+ +A+ D + +F G ++ AH+ + F D+ I +
Sbjct: 622 DAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATC 681
Query: 354 GSDGKIIEWS 363
D K+ W+
Sbjct: 682 SVDKKVKIWN 691
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/232 (18%), Positives = 98/232 (42%), Gaps = 17/232 (7%)
Query: 138 DFLETFLGHTSPISCCRFSSSGNNI--ASASVDGTVRIWTYDSSTPASRNATIYCGTEIM 195
+ + T+ H+ ++CC F++S +++ A+ S D +++W D + RN T++ T +
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW--DLNQKECRN-TMFGHTNSV 752
Query: 196 SLEWECK---SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI-F 251
+ C+ D+LL +ADG +K W+ + +N F ++ D P E +
Sbjct: 753 N---HCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLED----PQEDMEV 805
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
+ S + I + ++++ T + + G I F+ + +
Sbjct: 806 IVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHS-TIQYCDFSPQNHLAVVA 864
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
+ +++ + ++ H S + ++F PD +S + D I W
Sbjct: 865 LSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 23/152 (15%)
Query: 106 GAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASA 165
GA +Q+F A+ E E+K H + CC FS+ IA+
Sbjct: 640 GADKTLQVFK----------AETGEKLLEIK--------AHEDEVLCCAFSTDDRFIATC 681
Query: 166 SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLL-IGTADGGIKAWNVDAK 224
SVD V+IW +S T + ++ + S LLL G++D +K W+++ K
Sbjct: 682 SVDKKVKIW--NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Query: 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
C SV + SP + + S +A
Sbjct: 740 E--CRNTMFGHTNSVNHCRFSPDDKLLASCSA 769
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS------STPASRNATIYCGTE 193
L GH + C FS +A+ +G +RIW + P S G
Sbjct: 1126 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGW 1185
Query: 194 IMSLEWECKSDRLLLIGTADGGIKAWNV 221
+ L C S ++ +A G IK WNV
Sbjct: 1186 VTDL---CFSPDGKMLISAGGYIKWWNV 1210
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 102/232 (43%), Gaps = 29/232 (12%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD 204
GH+ + SS G S S DG +R+W D + S + +++S+ + +
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLW--DLAAGVSTRRFVGHTKDVLSVAFSL-DN 484
Query: 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD----LKCSP--VEPIFVSAAASR 258
R ++ + D IK WN + C ++ D ++ SP ++P VSA
Sbjct: 485 RQIVSASRDRTIKLWNTLGE---CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA---- 537
Query: 259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH 318
SW ++ VWN+ K + L ++++ + +G + A+ DG++
Sbjct: 538 --------SWD-KTVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
++D++ G ++ A +S I ++ F P+ + + G I W L+++ V
Sbjct: 587 LWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKI-WDLESKSIV 636
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC 201
T GHT +S S G+ AS DG V +W + ++ + I +L C
Sbjct: 556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL---AEGKKLYSLEANSVIHAL---C 609
Query: 202 KS-DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
S +R L + GIK W++++K +V DL +DLK + AA++R
Sbjct: 610 FSPNRYWLCAATEHGIKIWDLESKSIVEDLK--------VDLKAEAEKADNSGPAATKR 660
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK 202
+GH PIS F+ + + SAS DGT+RIW S+N I+S W
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIW--HGGNGNSQNCFYGHSQSIVSASW--V 298
Query: 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP 237
D ++ + DG ++ W++ ++ L+ D P
Sbjct: 299 GDDKVISCSMDGSVRLWSLKQNTLLA-LSIVDGVP 332
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 14/222 (6%)
Query: 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRL 206
T+ ++C +S GN+I + +G +R+W + T A N + I+S++W +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLW---NKTGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 207 LLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE---PIFVSAAASRRYGSS 263
+ + + I WNV + V+ + S ++ + + + V ++
Sbjct: 165 ISMDVENVTI-LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF--- 220
Query: 264 NIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMS 323
+ ++ V+ + T K T +G P I+ L FN K+L +++ DG + ++
Sbjct: 221 -VIPGPKGAIFVYQI-TEKTPTGKLIGHHGP-ISVLEFNDTNKLLLSASDDGTLRIWHGG 277
Query: 324 AGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365
G + H +I S + D+ + S DG + WSL+
Sbjct: 278 NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK 318
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 91/208 (43%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
+ +F GH+ + C ++ G SAS D T+R+W D +T + + +++ S++
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVXSVDI 115
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
+ K+ ++ G+ D IK W + + + L D V + P E +
Sbjct: 116 DKKASX-IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 171
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
G+ + WN+ ++ +G + I +L + +G ++A++ DG I +
Sbjct: 172 AGNDK-------XVKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIXL 222
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
++++A A D + S+ F P+
Sbjct: 223 WNLAAKKAXYTLSAQDE-VFSLAFSPNR 249
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA--TIYCGTEIMSLEWE 200
F+GH S I+ S G IASA DG + +W A++ A T+ E+ SL +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL-----AAKKAXYTLSAQDEVFSLAFS 246
Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230
+R L GIK +++D + +V DL
Sbjct: 247 --PNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 334 HDSAISSILFGPDETSIFSLGSDGKIIEWSL 364
H+S I+++ PD T I S G DG+I W+L
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY--DSSTPASRNATIYCGTEIMSLE 198
+TF GH S I+ F +GN A+ S D T R++ D + I CG +S
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 290
Query: 199 WECKSDRLLLIGTADGGIKAWN 220
KS RLLL G D W+
Sbjct: 291 ---KSGRLLLAGYDDFNCNVWD 309
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 19/208 (9%)
Query: 134 EVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTE 193
E V GHT +SCCRF N I ++S D T +W ++ + T + G +
Sbjct: 141 EGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTT-TFTGHTG-D 197
Query: 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253
+MSL RL + G D K W+V + +C T + + P F +
Sbjct: 198 VMSLSLA-PDTRLFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313
GS + A+ +++++ + + ITS+ F+ +G++L A
Sbjct: 255 -------GSDD------ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 301
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSI 341
D +++D + HD+ +S +
Sbjct: 302 DFNCNVWDALKADRAGVLAGHDNRVSCL 329
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 24/199 (12%)
Query: 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECK-- 202
+S + C ++ SGN +A +D I+ + R + G T +S C+
Sbjct: 107 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC---CRFL 163
Query: 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS 262
D ++ + D W+++ + T V+ L +P +FVS A
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACD----- 216
Query: 263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDM 322
AS +W+++ + M I ++CF NG A + D +FD+
Sbjct: 217 --------ASAKLWDVR--EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266
Query: 323 SAGLQITGWPAHDSAISSI 341
A ++ + +HD+ I I
Sbjct: 267 RADQELMTY-SHDNIICGI 284
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY--DSSTPASRNATIYCGTEIMSLE 198
+TF GH S I+ F +GN A+ S D T R++ D + I CG +S
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 199 WECKSDRLLLIGTADGGIKAWN 220
KS RLLL G D W+
Sbjct: 280 ---KSGRLLLAGYDDFNCNVWD 298
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 19/208 (9%)
Query: 134 EVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTE 193
E V GHT +SCCRF N I ++S D T +W ++ + T + G +
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTT-TFTGHTG-D 186
Query: 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253
+MSL RL + G D K W+V + +C T + + P F +
Sbjct: 187 VMSLSLA-PDTRLFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313
GS + A+ +++++ + + ITS+ F+ +G++L A
Sbjct: 244 -------GSDD------ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSI 341
D +++D + HD+ +S +
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCL 318
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 24/199 (12%)
Query: 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECK-- 202
+S + C ++ SGN +A +D I+ + R + G T +S C+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC---CRFL 152
Query: 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS 262
D ++ + D W+++ + T V+ L +P +FVS A
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACD----- 205
Query: 263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDM 322
AS +W+++ + M I ++CF NG A + D +FD+
Sbjct: 206 --------ASAKLWDVR--EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 323 SAGLQITGWPAHDSAISSI 341
A ++ + +HD+ I I
Sbjct: 256 RADQELMTY-SHDNIICGI 273
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY--DSSTPASRNATIYCGTEIMSLE 198
+TF GH S I+ F +GN A+ S D T R++ D + I CG +S
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 199 WECKSDRLLLIGTADGGIKAWN 220
KS RLLL G D W+
Sbjct: 280 ---KSGRLLLAGYDDFNCNVWD 298
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 19/208 (9%)
Query: 134 EVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTE 193
E V GHT +SCCRF N I ++S D T +W ++ + T + G +
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTT-TFTGHTG-D 186
Query: 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253
+MSL RL + G D K W+V + +C T + + P F +
Sbjct: 187 VMSLSLA-PDTRLFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313
GS + A+ +++++ + + ITS+ F+ +G++L A
Sbjct: 244 -------GSDD------ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSI 341
D +++D + HD+ +S +
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCL 318
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 24/199 (12%)
Query: 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECK-- 202
+S + C ++ SGN +A +D I+ + R + G T +S C+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC---CRFL 152
Query: 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS 262
D ++ + D W+++ + T V+ L +P +FVS A
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACD----- 205
Query: 263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDM 322
AS +W+++ + M I ++CF NG A + D +FD+
Sbjct: 206 --------ASAKLWDVR--EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 323 SAGLQITGWPAHDSAISSI 341
A ++ + +HD+ I I
Sbjct: 256 RADQELMTY-SHDNIICGI 273
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY--DSSTPASRNATIYCGTEIMSLE 198
+TF GH S I+ F +GN A+ S D T R++ D + I CG +S
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 199 WECKSDRLLLIGTADGGIKAWN 220
KS RLLL G D W+
Sbjct: 280 ---KSGRLLLAGYDDFNCNVWD 298
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 19/208 (9%)
Query: 134 EVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTE 193
E V GHT +SCCRF N I ++S D T +W ++ + T + G +
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTT-TFTGHTG-D 186
Query: 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253
+MSL RL + G D K W+V + +C T + + P F +
Sbjct: 187 VMSLSLA-PDTRLFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313
GS + A+ +++++ + + ITS+ F+ +G++L A
Sbjct: 244 -------GSDD------ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSI 341
D +++D + HD+ +S +
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCL 318
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 24/192 (12%)
Query: 153 CRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECK--SDRLLLI 209
C ++ SGN +A +D I+ + R + G T +S C+ D ++
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC---CRFLDDNQIVT 159
Query: 210 GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG 269
+ D W+++ + T V+ L +P +FVS A
Sbjct: 160 SSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACD------------ 205
Query: 270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT 329
AS +W+++ + M I ++CF NG A + D +FD+ A ++
Sbjct: 206 -ASAKLWDVR--EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 330 GWPAHDSAISSI 341
+ +HD+ I I
Sbjct: 263 TY-SHDNIICGI 273
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 30/209 (14%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG--TEIMSLEWECK 202
GH+ +S SS G S S DGT+R+W + T R + G +++S+ +
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR----FVGHTKDVLSVAFS-S 138
Query: 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS--VLDLKCSP--VEPIFVSAAASR 258
+R ++ G+ D IK WN VC D S V ++ SP PI VS +
Sbjct: 139 DNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 195
Query: 259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH 318
+ VWN+ K T +G + ++ + +G + A+ DG
Sbjct: 196 L-------------VKVWNLANCKLKTN-HIGH-TGYLNTVTVSPDGSLCASGGKDGQAM 240
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDE 347
++D++ G + D I+++ F P+
Sbjct: 241 LWDLNEGKHLYTLDGGD-IINALCFSPNR 268
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 19/184 (10%)
Query: 146 HTSPISCCRFSSSGNN--IASASVDGTVRIWTYDSSTPASRNA--TIYCGTEIMSLEWEC 201
H+ +SC RFS + +N I S D V++W + + + T Y T +S +
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD--- 226
Query: 202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYG 261
L G DG W+++ + + L+ D +++ C ++ AA
Sbjct: 227 --GSLCASGGKDGQAMLWDLNEGKHLYTLDGGD----IINALCFSPNRYWLCAATG---- 276
Query: 262 SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFD 321
+I W + + + ++ E PP TSL ++ +G+ L A D ++ ++
Sbjct: 277 -PSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Query: 322 MSAG 325
++ G
Sbjct: 335 VTIG 338
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY--DSSTPASRNATIYCGTEIMSLE 198
+TF GH S I+ F +GN A+ S D T R++ D + I CG +S
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 199 WECKSDRLLLIGTADGGIKAWN 220
KS RLLL G D W+
Sbjct: 280 ---KSGRLLLAGYDDFNCNVWD 298
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 19/208 (9%)
Query: 134 EVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTE 193
E V GHT +SCCRF N I ++S D T +W ++ + T + G +
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTT-TFTGHTG-D 186
Query: 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253
+MSL RL + G D K W+V + +C T + + P F +
Sbjct: 187 VMSLSLA-PDTRLFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313
GS + A+ +++++ + + ITS+ F+ +G++L A
Sbjct: 244 -------GSDD------ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSI 341
D +++D + HD+ +S +
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCL 318
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 24/192 (12%)
Query: 153 CRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECK--SDRLLLI 209
C ++ SGN +A +D I+ + R + G T +S C+ D ++
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC---CRFLDDNQIVT 159
Query: 210 GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG 269
+ D W+++ + T V+ L +P +FVS A
Sbjct: 160 SSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACD------------ 205
Query: 270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT 329
AS +W+++ + M I ++CF NG A + D +FD+ A ++
Sbjct: 206 -ASAKLWDVR--EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 330 GWPAHDSAISSI 341
+ +HD+ I I
Sbjct: 263 TY-SHDNIICGI 273
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/241 (19%), Positives = 91/241 (37%), Gaps = 42/241 (17%)
Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE 200
E + H+ + + S SG AS V G VRIW +T + + + W+
Sbjct: 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 112
Query: 201 CKSDRLLLIGTA----------DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI 250
+S R+ +G D G N+ + +N+ D PS P
Sbjct: 113 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA--MNSVDFKPS---------RPF 161
Query: 251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310
+ + + ++ ++ +K + GE + S+ +N +G + A+
Sbjct: 162 RIISGSDDN------------TVAIFEGPPFKFKST--FGEHTKFVHSVRYNPDGSLFAS 207
Query: 311 SAVDGMIHMFDMSAGLQITGWP-------AHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
+ DG I +++ G + + AH ++ + + PD T I S +D I W+
Sbjct: 208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Query: 364 L 364
+
Sbjct: 268 V 268
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI---TGWPAHDSAISSILFGPDETS 349
P ITS+ F++NG L A+ + + ++ ++ W H + ++ + + PD
Sbjct: 491 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 550
Query: 350 IFSLGSDGKIIEWSLQ 365
+ + D +I W++
Sbjct: 551 LATGSLDNSVIVWNMN 566
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 25/210 (11%)
Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA------SRNATIYCGT 192
F TF HT + R++ G+ AS DGT+ ++ T S + G+
Sbjct: 182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241
Query: 193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV 252
+ L W ++ +AD IK WN V L P ++ + I+
Sbjct: 242 -VFGLTWSPDGTKIAS-ASADKTIKIWN------VATLKVEKTIPVGTRIEDQQLGIIWT 293
Query: 253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA 312
A +I + GF + + ++ + G + AIT+L + +GK L ++
Sbjct: 294 KQAL------VSISANGFINFVNPEL---GSIDQVRYGHN-KAITALSSSADGKTLFSAD 343
Query: 313 VDGMIHMFDMSAGLQITGWP-AHDSAISSI 341
+G I+ +D+S G+ +P H + I+ I
Sbjct: 344 AEGHINSWDISTGISNRVFPDVHATMITGI 373
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 272 SLTVWNMKTWKAMTVLPLG---EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI 328
++ +WN+ T K +P+G ED L + L + + +G I+ + G
Sbjct: 262 TIKIWNVATLKVEKTIPVGTRIED----QQLGIIWTKQALVSISANGFINFVNPELGSID 317
Query: 329 TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364
H+ AI+++ D ++FS ++G I W +
Sbjct: 318 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIM----SLEWEC 201
HT+ ++C +S +A+ S+D +V +W + S + I G M S+ W
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK---PSDHPIIIKGAHAMSSVNSVIW-- 589
Query: 202 KSDRLLLIGTADGGIKAWNV 221
++ ++ D IK WNV
Sbjct: 590 LNETTIVSAGQDSNIKFWNV 609
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 30/209 (14%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG--TEIMSLEWECK 202
GH+ +S SS G S S DGT+R+W + T R + G +++S+ +
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR----FVGHTKDVLSVAFS-S 115
Query: 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS--VLDLKCSP--VEPIFVSAAASR 258
+R ++ G+ D IK WN VC D S V ++ SP PI VS +
Sbjct: 116 DNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 172
Query: 259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH 318
+ VWN+ K T +G + ++ + +G + A+ DG
Sbjct: 173 L-------------VKVWNLANCKLKTN-HIGH-TGYLNTVTVSPDGSLCASGGKDGQAM 217
Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDE 347
++D++ G + D I+++ F P+
Sbjct: 218 LWDLNEGKHLYTLDGGD-IINALCFSPNR 245
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 19/184 (10%)
Query: 146 HTSPISCCRFSSSGNN--IASASVDGTVRIWTYDSSTPASRNA--TIYCGTEIMSLEWEC 201
H+ +SC RFS + +N I S D V++W + + + T Y T +S +
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD--- 203
Query: 202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYG 261
L G DG W+++ + + L+ D +++ C ++ AA
Sbjct: 204 --GSLCASGGKDGQAMLWDLNEGKHLYTLDGGD----IINALCFSPNRYWLCAATG---- 253
Query: 262 SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFD 321
+I W + + + ++ E PP TSL ++ +G+ L A D ++ ++
Sbjct: 254 -PSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Query: 322 MSAG 325
++ G
Sbjct: 312 VTIG 315
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 38/235 (16%)
Query: 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSST--PASRNAT---IYCGTEIMSL 197
FLGHT + FS I S D +R+W SR A + C SL
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSL 164
Query: 198 EWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN-TTDAFPSVLDLKCSPVEPIFVSAAA 256
+ +++ G D +K W++ R+V DL T+ SV V P A+
Sbjct: 165 D-----APVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVT------VSPDGSLCAS 213
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316
S + G + + W++ +A++ + G I +CF+ N + A+ G
Sbjct: 214 SDKDGVARL----------WDLTKGEALSEMAAGA---PINQICFSPNRYWMCAATEKG- 259
Query: 317 IHMFDM-SAGLQITGWPAHDSAIS------SILFGPDETSIFSLGSDGKIIEWSL 364
I +FD+ + + + P H + SI + D ++++S +D I W +
Sbjct: 260 IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH--NGKILAASAVDGMIHMFDMSAGLQIT 329
+L VWN+K + M L G ++ + F+ + ++ + D ++ ++D++ G +T
Sbjct: 132 ALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVT 190
Query: 330 GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371
H + ++S+ PD + S DG W L +G+ L
Sbjct: 191 DLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL-TKGEAL 231
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/72 (19%), Positives = 35/72 (48%)
Query: 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS 355
++ + ++NG +++ D + ++++ G + H + S+ F PD I S G
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 356 DGKIIEWSLQNQ 367
D + W+++ +
Sbjct: 130 DNALRVWNVKGE 141
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS 355
++ L + +S+ D + ++D+ G + H S + S+ F PD I S G+
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
Query: 356 DGKIIEWSL 364
+ +I W++
Sbjct: 139 EREIKLWNI 147
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 95/237 (40%), Gaps = 34/237 (14%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG--TEIMSLEWECK 202
GH +S S S+S D T+R+W + T R + G +E+ S+ +
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR----FVGHQSEVYSVAF-SP 128
Query: 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS 262
+R +L A+ IK WN+ + C ++ + + C PI SA + +
Sbjct: 129 DNRQILSAGAEREIKLWNILGE---CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAP 185
Query: 263 SNIYSWGFAS------LTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316
FAS L VWN T + L + NGK +A D
Sbjct: 186 Y------FASVGWDGRLKVWNTNFQIRYT---FKAHESNVNHLSISPNGKYIATGGKDKK 236
Query: 317 IHMFDMSAGLQITGWPAHD----SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ 369
+ ++D+ L +T +P + S I+ I F P + ++G+D + ++L Q +
Sbjct: 237 LLIWDI---LNLT-YPQREFDAGSTINQIAFNP-KLQWVAVGTDQGVKIFNLMTQSK 288
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSL 197
D L T+ GH S + C + +G+ I S D TVRIW+ ++ + + I S+
Sbjct: 216 DVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSL--KQVITLPAISIWSV 272
Query: 198 EWECKSDRLLLIGTADGGIKAWNVDAKR 225
+C S+ +++G++D ++ ++ + R
Sbjct: 273 --DCXSNGDIIVGSSDNLVRIFSQEKSR 298
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 81/231 (35%), Gaps = 31/231 (13%)
Query: 161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220
+AS S DGTVR+W+ D + +Y G ++ LLL G D I
Sbjct: 31 KVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVP 87
Query: 221 VDA-------------KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS 267
+ A + VC L+ D V+ ++ + + N
Sbjct: 88 LFATSGEDPLYTLIGHQGNVCSLSFQDGV--VISGSWDKTAKVWKEGSLVYNLQAHNASV 145
Query: 268 W--GFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV----------DG 315
W S + T A + L ++ I + HN + + V DG
Sbjct: 146 WDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDG 205
Query: 316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366
+I + D G + + H+S + I P+ I S G D + WS +N
Sbjct: 206 LIKLVDXHTGDVLRTYEGHESFVYCIKLLPN-GDIVSCGEDRTVRIWSKEN 255
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 355 SDGK-IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN 397
DG+ +I W N+ Q LWTRN S D E + +H +A D N
Sbjct: 216 KDGETVISWEKINKAQALWTRNKSEITDEEYKEFYKH-IAHDFN 258
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 355 SDGK-IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN 397
DG+ +I W N+ Q LWTRN S D E + +H +A D N
Sbjct: 216 KDGETVISWEKINKAQALWTRNKSEITDEEYKEFYKH-IAHDFN 258
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 10/133 (7%)
Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC 201
T GH+S + + S G +AS D V+IW SS P + + ++ W
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP--KFTKTNHNAAVKAVAWCP 269
Query: 202 KSDRLLLI--GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
LL GT D I WN +NT DA V L SP +S +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATG---ARVNTVDAGSQVTSLIWSPHSKEIMS---THG 323
Query: 260 YGSSNIYSWGFAS 272
+ +N+ W ++S
Sbjct: 324 FPDNNLSIWSYSS 336
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174
T +GH + ++ G N+ SAS+DGT+R+W
Sbjct: 173 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTY-DSSTPASRNATIYCGTEIMSLEWECKSD 204
H S I+ +F SG + S+S D ++IW+ D S P + T+I ++
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID----RG 190
Query: 205 RLLLIGTADGGIKAW 219
R +L + DG I+ W
Sbjct: 191 RNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174
T +GH + ++ G N+ SAS+DGT+R+W
Sbjct: 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTY-DSSTPASRNATIYCGTEIMSLEWECKSD 204
H S I+ +F SG + S+S D ++IW+ D S P + T+I ++
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID----RG 193
Query: 205 RLLLIGTADGGIKAW 219
R +L + DG I+ W
Sbjct: 194 RNVLSASLDGTIRLW 208
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 81/217 (37%), Gaps = 32/217 (14%)
Query: 114 FNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
+N + + R V + T GH+ + R++ G ++AS D V +
Sbjct: 117 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176
Query: 174 WTYDSSTPAS------RNATIYCGTEIMSLEWECKSDRLLLI--GTADGGIKAWNVDAKR 225
W S P + T + G + ++ W +L GT+D I+ WNV +
Sbjct: 177 WP---SAPGEGGWVPLQTFTQHQGA-VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG- 231
Query: 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA--SLTVWNMKTWKA 283
C L+ DA V + SP +S GFA L +W T
Sbjct: 232 -AC-LSAVDAHSQVCSILWSPHYKELISGH-------------GFAQNQLVIWKYPT--M 274
Query: 284 MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320
V L + SL + +G +A++A D + ++
Sbjct: 275 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 61/329 (18%), Positives = 135/329 (41%), Gaps = 51/329 (15%)
Query: 131 DFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYC 190
D PE++ D+ + +S N+ + ++D +V +W+ S
Sbjct: 18 DAPEIRNDYYLNLVDWSS-----------GNVLAVALDNSVYLWSASSGDILQLLQMEQP 66
Query: 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI 250
G I S+ W K L +GT+ ++ W+V ++ + ++ + A L
Sbjct: 67 GEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS------ 119
Query: 251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310
++ ++ SR S +I+ + V V L + L + +G+ LA+
Sbjct: 120 YILSSGSR---SGHIH---HHDVRV------AEHHVATLSGHSQEVCGLRWAPDGRHLAS 167
Query: 311 SAVDGMIHMFDMSAG----LQITGWPAHDSAISSILFGPDETSIFSLG---SDGKIIEWS 363
D +++++ + G + + + H A+ ++ + P ++++ + G SD I W+
Sbjct: 168 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227
Query: 364 LQNQGQVL-----WTRNCSRFCDPESSKSCR-HEMALDVNGRRLLVTSGSVRAPIYQVRG 417
+ + G L ++ CS P + H A + +L++ A + +++G
Sbjct: 228 VCS-GACLSAVDAHSQVCSILWSPHYKELISGHGFAQN----QLVIWKYPTMAKVAELKG 282
Query: 418 HASGMRTL---PHGAAITTVDWHPTLPMF 443
H S + +L P GA + + TL ++
Sbjct: 283 HTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 81/217 (37%), Gaps = 32/217 (14%)
Query: 114 FNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
+N + + R V + T GH+ + R++ G ++AS D V +
Sbjct: 197 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256
Query: 174 WTYDSSTPAS------RNATIYCGTEIMSLEWECKSDRLLLI--GTADGGIKAWNVDAKR 225
W S P + T + G + ++ W +L GT+D I+ WNV +
Sbjct: 257 WP---SAPGEGGWVPLQTFTQHQGA-VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG- 311
Query: 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA--SLTVWNMKTWKA 283
C L+ DA V + SP +S GFA L +W T
Sbjct: 312 -AC-LSAVDAHSQVCSILWSPHYKELISGH-------------GFAQNQLVIWKYPT--M 354
Query: 284 MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320
V L + SL + +G +A++A D + ++
Sbjct: 355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR 184
GHTS + S G +ASA+ D T+R+W PA R
Sbjct: 362 GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 131 DFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYC 190
D PE++ D+ + +S N+ + ++D +V +W+ S
Sbjct: 98 DAPEIRNDYYLNLVDWSS-----------GNVLAVALDNSVYLWSASSGDILQLLQMEQP 146
Query: 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA 235
G I S+ W K L +GT+ ++ W+V ++ + ++ + A
Sbjct: 147 GEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA 190
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 81/217 (37%), Gaps = 32/217 (14%)
Query: 114 FNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
+N + + R V + T GH+ + R++ G ++AS D V +
Sbjct: 208 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 267
Query: 174 WTYDSSTPAS------RNATIYCGTEIMSLEWECKSDRLLLI--GTADGGIKAWNVDAKR 225
W S P + T + G + ++ W +L GT+D I+ WNV +
Sbjct: 268 WP---SAPGEGGWVPLQTFTQHQGA-VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG- 322
Query: 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA--SLTVWNMKTWKA 283
C L+ DA V + SP +S GFA L +W T
Sbjct: 323 -AC-LSAVDAHSQVCSILWSPHYKELISGH-------------GFAQNQLVIWKYPT--M 365
Query: 284 MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320
V L + SL + +G +A++A D + ++
Sbjct: 366 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR 184
GHTS + S G +ASA+ D T+R+W PA R
Sbjct: 373 GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 412
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 131 DFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYC 190
D PE++ D+ + +S N+ + ++D +V +W+ S
Sbjct: 109 DAPEIRNDYYLNLVDWSS-----------GNVLAVALDNSVYLWSASSGDILQLLQMEQP 157
Query: 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA 235
G I S+ W K L +GT+ ++ W+V ++ + ++ + A
Sbjct: 158 GEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA 201
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 140 LETFLGHTSPISCCRFSSSGNNI-ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLE 198
L ++ H + ++C S +++ S S D + +W PAS+ G SL
Sbjct: 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221
Query: 199 WECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP 246
W + + + G +G + VD K C L++ V L SP
Sbjct: 222 WHPQQSEVFVFGDENGTVSL--VDTKSTSCVLSSAVHSQCVTGLVFSP 267
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174
T GH S + F SG +AS S D TVRIW
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD 204
GH + +S GN +ASAS D T IW + E+ S+ W S
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSG 117
Query: 205 RLLLIGTADGGIKAWNVDAK 224
LL + D + W VD +
Sbjct: 118 NLLATCSRDKSVWVWEVDEE 137
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 95/264 (35%), Gaps = 44/264 (16%)
Query: 127 QGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA 186
+ ++DF + + T GH + + ++ SGN +A+ S D +V +W D +
Sbjct: 90 KNQDDF-----ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS 144
Query: 187 TIYCGTE-IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS 245
+ T+ + + W S LL + D +K + + VC +V L
Sbjct: 145 VLNSHTQDVKHVVWH-PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 203
Query: 246 PVEPIFVSAAASRRYGSSNIY---------------SW-------GFASLTVWNMKTWKA 283
P S + R Y SW GF S T++++ W
Sbjct: 204 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI-AWCQ 262
Query: 284 MTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQITGWPAHDSAISSIL 342
+T A+ + C + ++ D F ++A L AH ++ +
Sbjct: 263 LT--------GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH----QAHSQDVNCVA 310
Query: 343 FGPDETSIF-SLGSDGKIIEWSLQ 365
+ P E + S DG++ W Q
Sbjct: 311 WNPKEPGLLASCSDDGEVAFWKYQ 334
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF-SLG 354
+ +L +G + D + ++D+S + + AH S ++ + P + +IF S G
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 355 SDGKIIEWSLQN 366
DG+I+ W +
Sbjct: 202 EDGRILLWDTRK 213
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 101 EFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKV------DFLETFLGHTSPISCCR 154
+F DI++ + ++++ + G +DF VKV L+++ H+S ++C
Sbjct: 132 KFAKYEHDDIVKTLS--VFSDGTQAVSGGKDF-SVKVWDLSQKAVLKSYNAHSSEVNCVA 188
Query: 155 FSSSGNNI-ASASVDGTVRIWTYDSSTPASRNATIYCGTEIM--SLEWECKSDRLLLIGT 211
+ I S DG + +W PA+R +C ++ + S+ W + D G
Sbjct: 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATR--IDFCASDTIPTSVTWHPEKDDTFACGD 246
Query: 212 ADGGIKAWNV 221
G + N+
Sbjct: 247 ETGNVSLVNI 256
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 271 ASLTVWNMKTWKAMTVLPLGEDPPA--ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI 328
A++ VW++ T K + L + + NG+I++ S +DG ++ +++ +
Sbjct: 274 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS-LDGTLNFYELGHDEVL 332
Query: 329 TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
H+ I+++ P + S DG+I+EWS
Sbjct: 333 KTISGHNKGITALTVNP----LISGSYDGRIMEWS 363
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLE 198
+ F GHT SC S+ G + + +D TVR W ++ ++I SL
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFSLG 231
Query: 199 WECKSDRLLLIGTADGGIKAWNVD 222
+ C + L +G ++ +V+
Sbjct: 232 Y-CPTGEWLAVGMESSNVEVLHVN 254
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 29/188 (15%)
Query: 153 CRFSSSGNNIASASVDGTVRIWTY------DSSTPASRNATIYCGTEIMSLEWECKSDRL 206
C F+ +G ++A +D I+ D + P SR T + G S ++ +
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA-SSCQYVPDQETR 172
Query: 207 LLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS-----VLDLKCSPVEP-IFVSAAASRRY 260
L+ G+ D W+V + + + FPS VL L + + +F+S +
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGS--EFPSGHTADVLSLSINSLNANMFISGSCD--- 227
Query: 261 GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320
++ +W+++ G + I S+ F +G+ + DG +F
Sbjct: 228 ----------TTVRLWDLRITSRAVRTYHGHEGD-INSVKFFPDGQRFGTGSDDGTCRLF 276
Query: 321 DMSAGLQI 328
DM G Q+
Sbjct: 277 DMRTGHQL 284
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW---------TYDSSTPASRNATIYC 190
+ T+ GH I+ +F G + S DGT R++ Y+ + N
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301
Query: 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT 232
+ S+ S RLL G ++G W+ +V +L T
Sbjct: 302 TSVAFSI-----SGRLLFAGYSNGDCYVWDTLLAEMVLNLGT 338
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLG-------HTSPISCCRF 155
ED+ G + + F +GL + G+ ++ D E +G H +P+ R
Sbjct: 130 EDIKFGGVCE-FANGLLVYSNEFNLGQIHVTRLQTD-AEQVVGKGVLVKAHANPVKMVRL 187
Query: 156 SSSGNNIASASVDGT-VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLI 209
+ G+ +A+ S DGT +R++ D+ T I+ + W +L ++
Sbjct: 188 NRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVV 242
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 296 ITSLCFN-HNGKILAASAVDGMIHMFDM-SAGLQITGWPAHDSAISSILFGP-DETSIFS 352
+ L FN ++ ILA + D + ++D+ + L++ + +H I + + P +ET + S
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 353 LGSDGKIIEWSLQNQGQ 369
G+D ++ W L G+
Sbjct: 340 SGTDRRLHVWDLSKIGE 356
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 296 ITSLCFN-HNGKILAASAVDGMIHMFDM-SAGLQITGWPAHDSAISSILFGP-DETSIFS 352
+ L FN ++ ILA + D + ++D+ + L++ + +H I + + P +ET + S
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 353 LGSDGKIIEWSLQNQGQ 369
G+D ++ W L G+
Sbjct: 342 SGTDRRLHVWDLSKIGE 358
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 139 FLETFLGHTSPISCCRFSSS--GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS 196
++T GH P+ ++ G +AS S DG V IW ++ + + S
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNS 104
Query: 197 LEWE-CKSDRLLLIGTADGGI 216
++W + LLL+ ++DG +
Sbjct: 105 VQWAPHEYGPLLLVASSDGKV 125
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 296 ITSLCFN-HNGKILAASAVDGMIHMFDM-SAGLQITGWPAHDSAISSILFGP-DETSIFS 352
+ L FN ++ ILA + D + ++D+ + L++ + +H I + + P +ET + S
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 353 LGSDGKIIEWSLQNQGQ 369
G+D ++ W L G+
Sbjct: 344 SGTDRRLHVWDLSKIGE 360
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA-- 295
S+ +K SP + A S +G +Y F + ++ + LGE +
Sbjct: 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSW 293
Query: 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH--DSAISSILFGPDE 347
+ SL FN +G+ L ++ DG + +D+ +IT H D I + DE
Sbjct: 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 338 ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379
++SI F P +++ GSDG I W+LQ + ++ +N ++F
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI---KNFAKF 292
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 338 ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379
++SI F P +++ GSDG I W+LQ + ++ +N ++F
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI---KNFAKF 292
>pdb|4AAL|A Chain A, Maca Wild-Type Oxidized
pdb|4AAL|B Chain B, Maca Wild-Type Oxidized
pdb|4AAM|A Chain A, Maca Wild-Type Mixed-Valence
pdb|4AAN|A Chain A, Maca Wild-Type Fully Reduced
Length = 341
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT-TD 234
Y +P+ RN I W+ K D + ++G+A GI + DA ++V LNT T
Sbjct: 260 YVFRSPSLRNVAITMPYFHSGKVWKLK-DAVKIMGSAQLGISITDADADKIVTFLNTLTG 318
Query: 235 AFPSVLDLKCSP 246
A P V+ P
Sbjct: 319 AQPKVMHPVLPP 330
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 338 ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379
++SI F P +++ GSDG I W+LQ + ++ +N ++F
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI---KNFAKF 292
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA-- 295
S+ +K SP + A S +G +Y F + ++ + LGE +
Sbjct: 245 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSW 303
Query: 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH--DSAISSILFGPDE 347
+ SL FN +G+ L ++ DG + +D+ +IT H D I + DE
Sbjct: 304 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 357
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 338 ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379
++SI F P +++ GSDG I W+LQ + ++ +N ++F
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI---KNFAKF 292
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 296 ITSLCFN-HNGKILAASAVDGMIHMFDM-SAGLQITGWPAHDSAISSILFGP-DETSIFS 352
+ L FN ++ ILA + D + ++D+ + L++ + +H I + + P +ET + S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 353 LGSDGKIIEWSLQNQGQ 369
G+D ++ W L G+
Sbjct: 336 SGTDRRLNVWDLSKIGE 352
>pdb|4AAO|A Chain A, Maca-H93g
pdb|4AAO|B Chain B, Maca-H93g
Length = 341
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT-TD 234
Y +P+ RN I W+ K D + ++G+A GI + DA ++V LNT T
Sbjct: 260 YVFRSPSLRNVAITMPYFHSGKVWKLK-DAVKIMGSAQLGISITDADADKIVTFLNTLTG 318
Query: 235 AFPSVLDLKCSP 246
A P V+ P
Sbjct: 319 AQPKVMHPVLPP 330
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 139 FLETFLGHTSPISCCRFSSS--GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS 196
++T GH P+ ++ G +AS S DG V IW ++ + + S
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNS 104
Query: 197 LEWE-CKSDRLLLIGTADGGI 216
++W + +LL+ ++DG +
Sbjct: 105 VQWAPHEYGPMLLVASSDGKV 125
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 137 VDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS 196
+ +GH + ++ F I SAS D T+++W ++ST I
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW--NTSTCEFVRTLNGHKRGIAC 301
Query: 197 LEWECKSDRLLLIGTADGGIKAWNVD 222
L++ DRL++ G++D I+ W+++
Sbjct: 302 LQYR---DRLVVSGSSDNTIRLWDIE 324
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 139 FLETFLGHTSPISCCRFSSS--GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS 196
++T GH P+ ++ G +AS S DG V IW ++ + + S
Sbjct: 47 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNS 106
Query: 197 LEWE-CKSDRLLLIGTADGGI 216
++W + LLL+ ++DG +
Sbjct: 107 VQWAPHEYGPLLLVASSDGKV 127
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 12/194 (6%)
Query: 136 KVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYC--GTE 193
++D L GH + + +S+ G +A+ S D +V IW D S ++ +
Sbjct: 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 194 IMSLEWECKSDRLLLIGTADGGIKAWN--VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
+ + W S+ LL + D ++ W D V LN + +V E +F
Sbjct: 156 VKHVIWH-PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG--TVWSSDFDKTEGVF 212
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
+ S S + W + + + W +LP + ++ + NG ++A+
Sbjct: 213 RLCSGS---DDSTVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASV 267
Query: 312 AVDGMIHMFDMSAG 325
DG++ +++ G
Sbjct: 268 GADGVLAVYEEVDG 281
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 296 ITSLCFN-HNGKILAASAVDGMIHMFDM-SAGLQITGWPAHDSAISSILFGP-DETSIFS 352
+ L FN ++ ILA + D + ++D+ + L++ + +H I + + P +ET + S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 353 LGSDGKIIEWSLQNQGQ 369
G+D ++ W L G+
Sbjct: 338 SGTDRRLNVWDLSKIGE 354
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 296 ITSLCFN-HNGKILAASAVDGMIHMFDM-SAGLQITGWPAHDSAISSILFGP-DETSIFS 352
+ L FN ++ ILA + D + ++D+ + L++ + +H I + + P +ET + S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 353 LGSDGKIIEWSLQNQGQ 369
G+D ++ W L G+
Sbjct: 338 SGTDRRLNVWDLSKIGE 354
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 37/180 (20%)
Query: 162 IASASVDGTVRIWTYDSSTPASRNATIYCG--TEIMSLEWECKSDRLLLIGTADGGIKAW 219
I AS G + + +N + G ++ + W +D ++ G+ D + W
Sbjct: 50 IXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVW 109
Query: 220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS------- 272
+ +V L EP+ ++R G I +W +
Sbjct: 110 EIPDGGLVLPLR----------------EPVITLEGHTKRVG---IVAWHPTAQNVLLSA 150
Query: 273 -----LTVWNMKTWKAMTVLPLGED--PPAITSLCFNHNGKILAASAVDGMIHMFDMSAG 325
+ VW++ T A VL LG D P I S+ ++ +G ++ S D + + + G
Sbjct: 151 GXDNVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,883,546
Number of Sequences: 62578
Number of extensions: 521532
Number of successful extensions: 1701
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1182
Number of HSP's gapped (non-prelim): 354
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)